Citrus Sinensis ID: 004815
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | 2.2.26 [Sep-21-2011] | |||||||
| F4KBF3 | 721 | Probable acyl-activating | yes | no | 0.984 | 0.995 | 0.72 | 0.0 | |
| Q84P17 | 727 | Probable acyl-activating | no | no | 0.968 | 0.971 | 0.491 | 0.0 | |
| P27550 | 652 | Acetyl-coenzyme A synthet | N/A | no | 0.728 | 0.814 | 0.286 | 6e-45 | |
| A7MPJ7 | 652 | Acetyl-coenzyme A synthet | yes | no | 0.722 | 0.808 | 0.287 | 7e-45 | |
| Q8FAY8 | 652 | Acetyl-coenzyme A synthet | yes | no | 0.728 | 0.814 | 0.286 | 7e-45 | |
| Q8Z1R0 | 652 | Acetyl-coenzyme A synthet | N/A | no | 0.795 | 0.889 | 0.281 | 9e-45 | |
| A8AN29 | 652 | Acetyl-coenzyme A synthet | yes | no | 0.795 | 0.889 | 0.277 | 1e-44 | |
| Q8ZKF6 | 652 | Acetyl-coenzyme A synthet | yes | no | 0.795 | 0.889 | 0.279 | 2e-44 | |
| Q88EH6 | 653 | Acetyl-coenzyme A synthet | yes | no | 0.790 | 0.882 | 0.271 | 5e-44 | |
| Q8X5T5 | 652 | Acetyl-coenzyme A synthet | N/A | no | 0.728 | 0.814 | 0.284 | 9e-44 |
| >sp|F4KBF3|AAE17_ARATH Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1068 bits (2762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/725 (72%), Positives = 612/725 (84%), Gaps = 7/725 (0%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATP-ATWQNITTHILSPDLPFS 64
YK+L+ IT DIEALGI ++E+L L +I+ HG++TP TW I+ IL P+LPFS
Sbjct: 3 YKSLNSITKSDIEALGISGDVSEKLLRDLEDII--HGSSTPPETWIQISRRILHPNLPFS 60
Query: 65 FHQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQE 124
FHQ++YYGCYKDFGPD PAWIPDP+ A +TNVGKLL+ RG+EFLG YK+P+SSFS+FQE
Sbjct: 61 FHQMMYYGCYKDFGPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSFSSFQE 120
Query: 125 FSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLS 184
FSVSNPEVYWKTVL+E++ FSVPP+CIL ++ +G+N PGG+WLPGA++NPA+NCL+
Sbjct: 121 FSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDN----PGGKWLPGAYLNPARNCLT 176
Query: 185 VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM 244
KR LDDIVIRW DEG LPV +MTL ELR++VWL A+AL+ALGL++ SAIA+DMPM
Sbjct: 177 NGFKRRLDDIVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVDMPM 236
Query: 245 NVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSR 304
NV SV+IYLAIVLAG++VVSIADSF+ EIS RL+ISKAKAIFTQD+IIRGDKSIPLY R
Sbjct: 237 NVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPLYRR 296
Query: 305 VIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF 364
V+DA+APLAIV+PA+GSS MKLR+ D+SW +FL R L+ E+ A E+P A+TNILF
Sbjct: 297 VVDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGNARNLRGVEYVAAEKPAGAYTNILF 356
Query: 365 SSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGA 424
SSGTTGEPKAIPWTN +P K+AADAWCH+D+++ D+VAWPTNLGWMMGPWLVYASL+NGA
Sbjct: 357 SSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYASLINGA 416
Query: 425 SIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEAS 484
+ LYNGSPLG FAKFVQDA+V++LGV+PSIVRTW+++N GYDWS IRCFGSTGEAS
Sbjct: 417 CMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGSTGEAS 476
Query: 485 NVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG 544
N+DEYLWLMGRA YKPVIEYCGGTEIGG FI+GSLLQ QSLAAFST AMGCKLFIL D
Sbjct: 477 NIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFILDEDS 536
Query: 545 CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGG 604
PIP G+GELAL P +FGASSTLLN NH+ VYF GMP+ GQILRRHGD+FERTS G
Sbjct: 537 NPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFERTSKG 596
Query: 605 YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFK 664
YYRAHGRADDTMNLGGIKV S+EIER+CN+VD +VLETAAIGVPPP GGPEQL I VVFK
Sbjct: 597 YYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVIAVVFK 656
Query: 665 DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724
++ PDLN L+ SFNS +QKKLNPLFKVS VV LPSLPRTATNKVMRRVLR+QL Q
Sbjct: 657 SPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVLRQQLTQTG 716
Query: 725 QNSKL 729
NSKL
Sbjct: 717 LNSKL 721
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q84P17|AEE18_ARATH Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/728 (49%), Positives = 481/728 (66%), Gaps = 22/728 (3%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPA-TWQNITTH-ILSPDLPF 63
+K++ ++ D G+ + A++ + +++++ P W+ + +L P P
Sbjct: 2 WKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHPH 61
Query: 64 SFHQLLYYGCYKDF-----GPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISS 118
HQLLYY Y ++ GP P W P +K TN+GKL++ G LG YK+P+ S
Sbjct: 62 PLHQLLYYSVYSNWDSSVHGP-PLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 119 FSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNP 178
F F+ FSV +PEVYW V++E+S F PP+CIL + S P G WLP A +N
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILNK--------SKPEGTWLPDAVLNI 172
Query: 179 AKNCL--SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGS 236
A+ CL S + K+ D + + W +EG PV MT+KELR +V LVA A++ +KG
Sbjct: 173 AECCLMPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISG-SFEKGD 231
Query: 237 AIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGD 296
IAIDMPM V++V+IYLAI+LAG IVVSIADSFA+ EI+ RL+ISKAK IFTQD I+RG
Sbjct: 232 TIAIDMPMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGG 291
Query: 297 KSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLK--ENEFAAVEQ 354
+ PLYSRV++A IV+PA G+ ++LR+ D+SW+DFL + EN + +
Sbjct: 292 RRFPLYSRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYL 351
Query: 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW 414
PVE+ NILFSSGTTGEPKAIPWT +P ++A D W H+D++ WPTNLGW+MGP
Sbjct: 352 PVESVINILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPT 411
Query: 415 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 474
L+++ L GA++ALY+GSPLG GF KFVQDA VT+LG VPS+V+TWK TNC++G +W+ I
Sbjct: 412 LMFSCFLTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKI 471
Query: 475 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMG 534
+ F +TGEASNVD+ LWL +A YKPVIE CGGTE+ +I GS LQ Q+ AFSTP+M
Sbjct: 472 KFFATTGEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMT 531
Query: 535 CKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRH 594
++ I +G P P + P GE+ L P GA+ LLNANH +VYF GMP LRRH
Sbjct: 532 TRIIIFDENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRH 591
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD+ +RT GGYY GRADDTMNLGGIK SS+EIER+C+ D + ETAA+ + PP+GGP
Sbjct: 592 GDIVKRTVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTPPNGGP 651
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714
E L I V K+ + +L+M F+ +QK LNPLFKVS V +P PRTA++K++RR
Sbjct: 652 ELLVIFAVLKE-GFKQQSGEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASSKLLRR 710
Query: 715 VLRKQLAQ 722
VLR Q+ Q
Sbjct: 711 VLRDQIKQ 718
|
May be involved in the peroxisomal activation of 2,4-dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|P27550|ACSA_ECOLI Acetyl-coenzyme A synthetase OS=Escherichia coli (strain K12) GN=acs PE=1 SV=2 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 163/569 (28%), Positives = 257/569 (45%), Gaps = 38/569 (6%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + + + D I W EGD K ++ KEL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIW--EGDDASQSKHISYKELHRDVCRFANTLL 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
LG+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T
Sbjct: 126 ELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVIT 185
Query: 289 QDLIIRGDKSIPLYSRVIDA-----QAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 342
D +R +SIPL V DA + V+ K + + ++G D+ W D +E+
Sbjct: 186 SDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDLVEQAS 245
Query: 343 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIV 401
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 246 DQHQAEEMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIY 301
Query: 402 AWPTNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIV 457
++GW+ G +L+Y L GA+ ++ G P + A+ V +V +L P+ +
Sbjct: 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTAI 361
Query: 458 RTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGG 513
R + I+G D SS+R GS GE N + + W + + PV++ TE GG
Sbjct: 362 RALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGF 421
Query: 514 FITGSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 571
IT L A L A S P G + ++ N+G P+ G L ++ G + TL
Sbjct: 422 MIT-PLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATE--GSLVITDSWPGQARTLF 478
Query: 572 NANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 629
+ YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 479 GDHERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 630 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN 689
A + E A +G+P G V + +P +L + V+K++
Sbjct: 534 SALVA-HPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIG 588
Query: 690 PLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
PL + SLP+T + K+MRR+LRK
Sbjct: 589 PLATPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Escherichia coli (strain K12) (taxid: 83333) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A7MPJ7|ACSA_CROS8 Acetyl-coenzyme A synthetase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 165/573 (28%), Positives = 257/573 (44%), Gaps = 46/573 (8%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + D I W EGD K ++ +EL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLSERGDQTAIIW--EGDDATQSKHISYRELHRDVCRFANTLT 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
+LG+ KG +AI MPM + V LA G + I F+ ++ R+ S A+ + T
Sbjct: 126 SLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSARLVIT 185
Query: 289 QDLIIRGDKSIPLYSRVIDAQAPLAI-----VIPAKGSSFSMKLRDG-DISWLDFLERVR 342
D +R ++IPL V DA + V+ K + +++ +G D+ W + +++
Sbjct: 186 ADEGVRAGRAIPLKKNVDDALKNPGVTSVEHVVVFKRTGGNIEWHEGRDLWWSELVKKA- 244
Query: 343 KLKENEFAAVEQPVEAFTN----ILFSSGTTGEPKAIPWTNATPFKAAADAWCH-MDIRK 397
+A QPVE IL++SG+TG+PK + T AA + + D
Sbjct: 245 -------SAHHQPVEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFLYAFDYHP 297
Query: 398 ADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVV 453
DI ++GW+ G +L+Y L GA+ ++ G P + A+ V KV +L
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPSANRMAQVVDKHKVNILYTA 357
Query: 454 PSIVRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTE 509
P+ +R + IDG D SS+R GS GE N + + W + + PVI+ TE
Sbjct: 358 PTAIRALMAEGDKAIDGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVIDTWWQTE 417
Query: 510 IGGGFITGSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGAS 567
GG IT L A L A S P G + ++ N+G PQ G L ++ G +
Sbjct: 418 TGGFMIT-PLPGATELKAGSATRPFFGVQPALVDNEGN--PQQGATEGNLVITDSWPGQA 474
Query: 568 STLLNANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSS 625
TL + YFS + + GD R GYY GR DD +N+ G ++ +
Sbjct: 475 RTLFGDHERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529
Query: 626 VEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQ 685
EIE + + E A +G+P G V + N+ +L + V+
Sbjct: 530 AEIESALVS-HPKIAEAAVVGIPHSIKGQAIYAYVTL----NHGEEPSAELYSEVRNWVR 584
Query: 686 KKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
K++ PL + SLP+T + K+MRR+LRK
Sbjct: 585 KEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Cronobacter sakazakii (strain ATCC BAA-894) (taxid: 290339) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8FAY8|ACSA_ECOL6 Acetyl-coenzyme A synthetase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 163/569 (28%), Positives = 257/569 (45%), Gaps = 38/569 (6%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + + + D I W EGD K ++ KEL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIW--EGDDASQSKHISYKELHRDVCRFANTLL 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
LG+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T
Sbjct: 126 ELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT 185
Query: 289 QDLIIRGDKSIPLYSRVIDA-----QAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 342
D +R +SIPL V DA + V+ K + + ++G D+ W D +E+
Sbjct: 186 SDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDLVEQAS 245
Query: 343 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIV 401
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 246 AQHQAEEMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIY 301
Query: 402 AWPTNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIV 457
++GW+ G +L+Y L GA+ ++ G P + A+ V +V +L P+ +
Sbjct: 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTAI 361
Query: 458 RTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGG 513
R + I+G D SS+R GS GE N + + W + + PV++ TE GG
Sbjct: 362 RALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGF 421
Query: 514 FITGSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 571
IT L A L A S P G + ++ N+G P+ G L ++ G + TL
Sbjct: 422 MIT-PLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATE--GSLVITDSWPGQARTLF 478
Query: 572 NANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 629
+ YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 479 GDHERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 630 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN 689
A + E A +G+P G V + +P +L + V+K++
Sbjct: 534 SALVA-HPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIG 588
Query: 690 PLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
PL + SLP+T + K+MRR+LRK
Sbjct: 589 PLATPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8Z1R0|ACSA_SALTI Acetyl-coenzyme A synthetase OS=Salmonella typhi GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (462), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 176/626 (28%), Positives = 278/626 (44%), Gaps = 46/626 (7%)
Query: 120 SNFQEFSVSNPEVY---WKTVLNEMSTSFSVPPQCILRENP--NGENHLSNPGG---QWL 171
+N + + NPE Y +K +N+ T + + + P +N PG +W
Sbjct: 11 ANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 172 PGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
+N A NCL + + + D I W EGD K ++ +EL +V A L LG
Sbjct: 71 EDGTLNLAANCLDRHLQENGDRTAIIW--EGDDASQSKHISYRELHRDVCRFANTLLDLG 128
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG +AI MPM + V LA G + I F+ I+ R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAIAGRIIDSSSRLVITADE 188
Query: 292 IIRGDKSIPLYSRVIDA-----QAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLK 345
+R +SIPL V DA + VI K + + ++G D+ W D +E+
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGNDIDWQEGRDLWWRDLIEKASPEH 248
Query: 346 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWP 404
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 249 QPEAMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304
Query: 405 TNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTW 460
++GW+ G +L+Y L GA+ ++ G P + + V +V +L P+ +R
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 461 --KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGGFIT 516
+ I+G D SS+R GS GE N + + W + + PV++ TE GG IT
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424
Query: 517 GSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574
L A L A S P G + ++ N+G PQ G L ++ G + TL +
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLFGDH 481
Query: 575 HY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632
YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 482 ERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 692
A + E A +G+P G V + +P +L + V+K++ PL
Sbjct: 537 VA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIGPLA 591
Query: 693 KVSHVVPLPSLPRTATNKVMRRVLRK 718
+ SLP+T + K+MRR+LRK
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Salmonella typhi (taxid: 90370) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A8AN29|ACSA_CITK8 Acetyl-coenzyme A synthetase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 174/626 (27%), Positives = 279/626 (44%), Gaps = 46/626 (7%)
Query: 120 SNFQEFSVSNPEVY---WKTVLNEMSTSFSVPPQCILRENP--NGENHLSNPGG---QWL 171
+N + + NPE Y ++ +NE T + + + P +N PG +W
Sbjct: 11 ANIADRCLINPEQYEAKYQQSINEPDTFWGEQGKILDWITPYKKVKNTSFAPGNVSIKWY 70
Query: 172 PGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
+N A NCL + + + D I W EGD K ++ +EL +V A L LG
Sbjct: 71 EDGTLNLAANCLDRHLQENGDRTAIIW--EGDDATQSKHISYRELHRDVCRFANTLLELG 128
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 292 IIRGDKSIPLYSRVIDAQA-----PLAIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLK 345
+R + IPL V DA + V+ K + + +G D+ W D +E+
Sbjct: 189 GVRAGRGIPLKKNVDDALKNPNVNSVEHVVVLKRTGGKVDWHEGRDLWWSDVIEKSSADH 248
Query: 346 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPT 405
+ E E P+ IL++SG+TG+PK + T AA + ++ D + W T
Sbjct: 249 QPEEMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPDDIYWCT 304
Query: 406 -NLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTW 460
++GW+ G +L+Y L GA+ ++ G P + A+ V +VT+L P+ +R
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVTILYTAPTAIRAL 364
Query: 461 --KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGGFIT 516
+ I+G D SS+R GS GE N + + W + + PV++ TE GG IT
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGFMIT 424
Query: 517 GSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574
L A L A S P G + ++ N+G PQ G L ++ G + TL +
Sbjct: 425 -PLPGATELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLFGDH 481
Query: 575 HY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632
YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 482 ERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 692
+ E A +G+P G V + + +P +L + V+K++ PL
Sbjct: 537 -VSHPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEDPSP----ELYTEVRNWVRKEIGPLA 591
Query: 693 KVSHVVPLPSLPRTATNKVMRRVLRK 718
+ SLP+T + K+MRR+LRK
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8ZKF6|ACSA_SALTY Acetyl-coenzyme A synthetase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=acs PE=1 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 175/626 (27%), Positives = 278/626 (44%), Gaps = 46/626 (7%)
Query: 120 SNFQEFSVSNPEVY---WKTVLNEMSTSFSVPPQCILRENP--NGENHLSNPGG---QWL 171
+N + + NPE Y +K +N+ T + + + P +N PG +W
Sbjct: 11 ANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 172 PGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
+N A NCL + + + D I W EGD K ++ +EL +V A L LG
Sbjct: 71 EDGTLNLAANCLDRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLLDLG 128
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 292 IIRGDKSIPLYSRVIDA-----QAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLK 345
+R +SIPL V DA + VI K + + ++G D+ W D +E+
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 346 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWP 404
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 249 QPEAMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304
Query: 405 TNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTW 460
++GW+ G +L+Y L GA+ ++ G P + + V +V +L P+ +R
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 461 --KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGGFIT 516
+ I+G D SS+R GS GE N + + W + + PV++ TE GG IT
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424
Query: 517 GSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574
L A L A S P G + ++ N+G PQ G L ++ G + TL +
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLFGDH 481
Query: 575 HY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632
YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 482 ERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 692
A + E A +G+P G V + +P +L + V+K++ PL
Sbjct: 537 VA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIGPLA 591
Query: 693 KVSHVVPLPSLPRTATNKVMRRVLRK 718
+ SLP+T + K+MRR+LRK
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q88EH6|ACSA1_PSEPK Acetyl-coenzyme A synthetase 1 OS=Pseudomonas putida (strain KT2440) GN=acsA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 169/622 (27%), Positives = 276/622 (44%), Gaps = 46/622 (7%)
Query: 117 SSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFV 176
+++ + SV NP+ +W+ + + P +++ ++H+ +W +
Sbjct: 22 ATYKAMYQQSVINPDGFWREQAQRIDW---IKPFTKVKQTSFDDHHVDI---KWFADGTL 75
Query: 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGS 236
N + NCL + + D + I W EGD +++T +EL +V A AL + +G
Sbjct: 76 NVSSNCLDRHLEERGDQLAIIW--EGDDPSEHRNITYRELHEQVCKFANALRGQDVHRGD 133
Query: 237 AIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGD 296
+ I MPM +VV LA G I + F+ ++ R+ K+K + T D +RG
Sbjct: 134 VVTIYMPMIPEAVVAMLACARIGAIHSVVFGGFSPEALAGRIIDCKSKVVITADEGVRGG 193
Query: 297 KSIPLYSRVIDAQAPLAIVIPAKGSSFSM---KLRDGDISWLD----FLERVRKLKENEF 349
+ PL A LA+ P S + K GDI+W + E + K+ +
Sbjct: 194 RRTPL-----KANVDLALTNPETSSVQKIIVCKRTGGDIAWHQHRDIWYEDLMKVASSHC 248
Query: 350 AAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWPTNLG 408
A E E IL++SG+TG+PK + T AA + D R ++ ++G
Sbjct: 249 APKEMGAEEALFILYTSGSTGKPKGVLHTTGGYLVYAALTHERVFDYRPGEVYWCTADVG 308
Query: 409 WMMG-PWLVYASLLNGASIALYNGSPLG---SGFAKFVQDAKVTMLGVVPSIVRTWKSTN 464
W+ G ++VY L NGA+ L+ G P + +K V KV +L P+ +R +
Sbjct: 309 WVTGHSYIVYGPLANGATTLLFEGVPNYPDITRVSKIVDKHKVNILYTAPTAIRAMMAEG 368
Query: 465 --CIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGGFITGSLL 520
++G D SS+R GS GE N + + W + P+++ TE GG I+ L
Sbjct: 369 QAAVEGADGSSLRLLGSVGEPINPEAWNWYYKTVGKERCPIVDTWWQTETGGILIS-PLP 427
Query: 521 QAQSL--AAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL--NANHY 576
A L + + P G ++ N G I + G L + G S +L +
Sbjct: 428 GATGLKPGSATRPFFGVVPALVDNLGNLI--DGAAEGNLVILDSWPGQSRSLYGDHDRFV 485
Query: 577 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 636
D YF + + + GD R GYY GR DD +N+ G ++ + EIE A
Sbjct: 486 DTYF-----KTFRGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRMGTAEIESAMVA-H 539
Query: 637 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSH 696
S V E A +GVP G + V+ N QLR+ + V+K++ P+
Sbjct: 540 SKVAEAAVVGVPHDIKGQG----IYVYVTLNAGIEASEQLRLELKNWVRKEIGPIASPDV 595
Query: 697 VVPLPSLPRTATNKVMRRVLRK 718
+ P LP+T + K+MRR+LRK
Sbjct: 596 IQWAPGLPKTRSGKIMRRILRK 617
|
Pseudomonas putida (strain KT2440) (taxid: 160488) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8X5T5|ACSA_ECO57 Acetyl-coenzyme A synthetase OS=Escherichia coli O157:H7 GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 162/569 (28%), Positives = 256/569 (44%), Gaps = 38/569 (6%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + + + D I W EGD K ++ KEL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIW--EGDDASQSKHISYKELHRDVCRFANTLL 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
LG+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T
Sbjct: 126 KLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVIT 185
Query: 289 QDLIIRGDKSIPLYSRVIDAQ-----APLAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 342
D +R +SIPL V DA + V+ K + + ++G D+ W D +E+
Sbjct: 186 SDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDQVEQAS 245
Query: 343 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIV 401
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 246 DQHQAEEMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIY 301
Query: 402 AWPTNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIV 457
++GW+ G +L+Y L GA+ ++ G P + A+ V +V +L P+ +
Sbjct: 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTAI 361
Query: 458 RTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGG 513
R + I+G D SS+R GS GE N + + W + + PV++ TE GG
Sbjct: 362 RALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGF 421
Query: 514 FITGSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 571
IT L A L A S P G + ++ N+G P+ G L ++ G + TL
Sbjct: 422 MIT-PLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATE--GSLVITDSWPGQARTLF 478
Query: 572 NANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 629
+ YFS + + GD R YY GR DD +N+ G ++ + EIE
Sbjct: 479 GDHERFEQTYFSTFKN-----MYFSGDGARRDEDSYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 630 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN 689
A + E A +G+P G V + +P +L + V+K++
Sbjct: 534 SALVA-HPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIG 588
Query: 690 PLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
PL + SLP+T + K+MRR+LRK
Sbjct: 589 PLATPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Escherichia coli O157:H7 (taxid: 83334) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| 225455790 | 726 | PREDICTED: acetyl-coenzyme A synthetase- | 0.991 | 0.995 | 0.791 | 0.0 | |
| 380042384 | 757 | acyl-activating enzyme 12 [Cannabis sati | 0.991 | 0.955 | 0.780 | 0.0 | |
| 255541886 | 722 | acetyl-CoA synthetase, putative [Ricinus | 0.987 | 0.997 | 0.787 | 0.0 | |
| 356567690 | 727 | PREDICTED: acetyl-coenzyme A synthetase- | 0.993 | 0.995 | 0.770 | 0.0 | |
| 356556613 | 744 | PREDICTED: acetyl-coenzyme A synthetase- | 0.993 | 0.973 | 0.769 | 0.0 | |
| 224130076 | 663 | predicted protein [Populus trichocarpa] | 0.908 | 0.998 | 0.826 | 0.0 | |
| 297734139 | 662 | unnamed protein product [Vitis vinifera] | 0.908 | 1.0 | 0.809 | 0.0 | |
| 449440895 | 725 | PREDICTED: probable acyl-activating enzy | 0.993 | 0.998 | 0.747 | 0.0 | |
| 380042362 | 720 | acyl-activating enzyme 1 [Cannabis sativ | 0.980 | 0.993 | 0.713 | 0.0 | |
| 297812451 | 721 | acyl-activating enzyme 17 [Arabidopsis l | 0.984 | 0.995 | 0.725 | 0.0 |
| >gi|225455790|ref|XP_002270918.1| PREDICTED: acetyl-coenzyme A synthetase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1214 bits (3140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/723 (79%), Positives = 644/723 (89%)
Query: 7 KALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSFH 66
K LD ITS DI ALGIPS+ AE+LH+ L +I+ + GAATP TW I+ +L+PDLP+S H
Sbjct: 4 KTLDSITSQDIAALGIPSEEAEKLHQTLLQIITSCGAATPQTWSRISKELLNPDLPYSLH 63
Query: 67 QLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFS 126
Q++YYGCY FGPDPPAW+PDPE +TNVG+LL+ RG+EFLGS YKDPISSFS+FQ+FS
Sbjct: 64 QMMYYGCYSHFGPDPPAWLPDPENVMLTNVGQLLERRGKEFLGSRYKDPISSFSDFQKFS 123
Query: 127 VSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVN 186
VSNPEVYWKTVL+E+S SFSVPPQC+L +NP+ EN LS PGGQWLPGAF+NPA+NCLSVN
Sbjct: 124 VSNPEVYWKTVLDELSISFSVPPQCVLYDNPSRENGLSYPGGQWLPGAFINPARNCLSVN 183
Query: 187 SKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV 246
KR+LDD V+ W DEGD G+P+ MTL+ELR EVW VAYAL+ LGL+KGSAIAIDMPMN
Sbjct: 184 DKRTLDDTVVIWHDEGDDGMPINRMTLEELRREVWSVAYALDTLGLEKGSAIAIDMPMNA 243
Query: 247 NSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVI 306
+SVVIYLAIVLAGYIVVSIADSFAS EIS RL+IS AKAIFTQD IIRGDKS+PLYSRV+
Sbjct: 244 SSVVIYLAIVLAGYIVVSIADSFASREISTRLKISNAKAIFTQDFIIRGDKSLPLYSRVV 303
Query: 307 DAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSS 366
DAQ+P AIVIPA GSSFSMKLRDGD+SW DFL+R +++EFAA+EQP+EAF NILFSS
Sbjct: 304 DAQSPTAIVIPAGGSSFSMKLRDGDMSWHDFLQRAINSRDDEFAAIEQPIEAFMNILFSS 363
Query: 367 GTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASI 426
GTTGEPKAIPWTNATP KAAADAWCHMDIRK DIVAWPTNLGWMMGPWLVYASLLNGA+I
Sbjct: 364 GTTGEPKAIPWTNATPLKAAADAWCHMDIRKGDIVAWPTNLGWMMGPWLVYASLLNGATI 423
Query: 427 ALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV 486
ALYNG+PLGSGFAKFVQDAKVTMLGV+PSIVRTWKSTNC G DWSSIRCF STGEAS+V
Sbjct: 424 ALYNGAPLGSGFAKFVQDAKVTMLGVIPSIVRTWKSTNCTAGLDWSSIRCFASTGEASSV 483
Query: 487 DEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCP 546
DEYLWLMGRA YKP+IEYCGGTEIGGGF+TGSLLQAQSLA+FSTPAMGC LFI+G+DG
Sbjct: 484 DEYLWLMGRAQYKPIIEYCGGTEIGGGFVTGSLLQAQSLASFSTPAMGCSLFIIGDDGNL 543
Query: 547 IPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYY 606
+PQ+ GMGELAL PL+FGAS+TLLNA+HYDVYF GMP NG++LRRHGDVFERTS GYY
Sbjct: 544 LPQDASGMGELALGPLMFGASTTLLNADHYDVYFKGMPIWNGKVLRRHGDVFERTSRGYY 603
Query: 607 RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS 666
RAHGRADDTMN+GGIKVSSVEIERICN V S+VLETAAIG+PPP GGPE+L IVVVFKDS
Sbjct: 604 RAHGRADDTMNIGGIKVSSVEIERICNTVHSSVLETAAIGMPPPAGGPERLMIVVVFKDS 663
Query: 667 NYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 726
N + PDLN+LR++FNS VQKKLNPLF+VSH VP+PSLPRTATNKVMRRVLR+QLAQL
Sbjct: 664 NNSIPDLNELRIAFNSEVQKKLNPLFRVSHTVPVPSLPRTATNKVMRRVLRQQLAQLSST 723
Query: 727 SKL 729
SK
Sbjct: 724 SKF 726
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042384|gb|AFD33356.1| acyl-activating enzyme 12 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1191 bits (3081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/724 (78%), Positives = 638/724 (88%), Gaps = 1/724 (0%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSF 65
+K+LD +TS DI ALGI +LA LH +LAEIV+ HG+ATP TW+ I++H+LSPDLPFS
Sbjct: 35 FKSLDSVTSSDIAALGIEPQLAHSLHGRLAEIVSNHGSATPHTWRCISSHLLSPDLPFSL 94
Query: 66 HQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEF 125
HQ+LYYGCYKDFGPDPPAWIPD E A TNVGKLL+ RG+EFLG YKDPIS+FS+FQEF
Sbjct: 95 HQMLYYGCYKDFGPDPPAWIPDAENAISTNVGKLLEKRGKEFLGVKYKDPISNFSDFQEF 154
Query: 126 SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSV 185
SV+NPEVYW+T+L+EM+ SFS PP+CILREN + + + NPGG+WLPGAF+NPAKNCL +
Sbjct: 155 SVTNPEVYWRTILDEMNISFSKPPECILRENFSRDGQILNPGGEWLPGAFINPAKNCLDL 214
Query: 186 NSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
N K SLDD +I W DEG LPV MTLKELR+EVWLVAYAL L L+ GSAIAIDMPMN
Sbjct: 215 NCK-SLDDTMILWRDEGKDDLPVNKMTLKELRSEVWLVAYALKELELEGGSAIAIDMPMN 273
Query: 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRV 305
V+SVVIYLAIVLAGY+VVSIADSFA+ EIS RL+ISKAKAIFTQDLI+RG+K+IPLYSR+
Sbjct: 274 VHSVVIYLAIVLAGYVVVSIADSFAAPEISTRLKISKAKAIFTQDLIVRGEKTIPLYSRI 333
Query: 306 IDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFS 365
++AQ+PLAIVIP+KG S S +LR GD+SW DFL R K K EFAAVEQP++A+TNILFS
Sbjct: 334 VEAQSPLAIVIPSKGFSVSAQLRHGDVSWHDFLNRANKFKNYEFAAVEQPIDAYTNILFS 393
Query: 366 SGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS 425
SGTTGEPKAIPWT ATPFKAAADAWCHMDI+K D+VAWPTNLGWMMGPWLVYASLLNGAS
Sbjct: 394 SGTTGEPKAIPWTQATPFKAAADAWCHMDIQKGDVVAWPTNLGWMMGPWLVYASLLNGAS 453
Query: 426 IALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 485
IALYNGSPLGSGFAKFVQDAKVTMLGV+PSIVRTWKSTNC+ GYDWS+IRCF STGEASN
Sbjct: 454 IALYNGSPLGSGFAKFVQDAKVTMLGVIPSIVRTWKSTNCVAGYDWSTIRCFSSTGEASN 513
Query: 486 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC 545
+DEYLWLMGRA YKPVIEYCGGTEIGGGF+TGSLLQAQSLAAFSTPAMGC LFILG+DG
Sbjct: 514 IDEYLWLMGRAYYKPVIEYCGGTEIGGGFVTGSLLQAQSLAAFSTPAMGCSLFILGSDGY 573
Query: 546 PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGY 605
PIP++ PG+GELAL PL+FGAS TLLNA+HYDVYF MPS NG++LRRHGD+FE TS GY
Sbjct: 574 PIPKHKPGIGELALGPLMFGASKTLLNADHYDVYFKRMPSLNGKVLRRHGDMFELTSKGY 633
Query: 606 YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 665
Y AHGRADDTMNLGGIKVSSVEIERICN D VLETAAIGVPP GGPEQL I VV K+
Sbjct: 634 YHAHGRADDTMNLGGIKVSSVEIERICNEADEKVLETAAIGVPPLAGGPEQLVIAVVLKN 693
Query: 666 SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 725
S+ T DLNQLR+SFNSAVQKKLNPLF+VS VVPL SLPRTATNKVMRR+LR+Q QLD+
Sbjct: 694 SDRTTVDLNQLRLSFNSAVQKKLNPLFRVSRVVPLSSLPRTATNKVMRRILRQQFTQLDK 753
Query: 726 NSKL 729
+SK+
Sbjct: 754 SSKI 757
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541886|ref|XP_002512007.1| acetyl-CoA synthetase, putative [Ricinus communis] gi|223549187|gb|EEF50676.1| acetyl-CoA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1182 bits (3058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/724 (78%), Positives = 637/724 (87%), Gaps = 4/724 (0%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSF 65
YK+LD I+ DI+ALGI S AE+L +++++I+ +GAATP TW I+ +L+PDLPFSF
Sbjct: 3 YKSLDAISVSDIQALGIASPAAEKLFKEISDIITHYGAATPQTWSRISKRLLNPDLPFSF 62
Query: 66 HQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEF 125
HQ++YYGCYKDFGPDPPAW+PDP+ A TNV KLL+ RG EFLGS Y DPISSFS FQEF
Sbjct: 63 HQIMYYGCYKDFGPDPPAWLPDPKTAGFTNVWKLLEKRGYEFLGSNYLDPISSFSAFQEF 122
Query: 126 SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSV 185
SVSNPEVYWKTVL+EMS SFSVPPQCILRE ++ LSNPGGQWLPGA +NPAKNCLS+
Sbjct: 123 SVSNPEVYWKTVLDEMSVSFSVPPQCILRE----DSPLSNPGGQWLPGAHLNPAKNCLSL 178
Query: 186 NSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
NS+ S +D+ I W DEG LPV MTL+ELR EVW VAYALNALGLD+G+AIAI+MPMN
Sbjct: 179 NSESSSNDVAITWRDEGSDHLPVSCMTLEELRTEVWSVAYALNALGLDRGAAIAINMPMN 238
Query: 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRV 305
V SV+IYLAIVLAGY+VVSIADSFA +EIS RL+IS+AKAIFTQDLIIRG+KSIPLYSRV
Sbjct: 239 VKSVIIYLAIVLAGYVVVSIADSFAPVEISTRLKISQAKAIFTQDLIIRGEKSIPLYSRV 298
Query: 306 IDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFS 365
+DAQ+P+AIVIP KGS+FSMKLRDGDISW DFLERV L+ NEFAAVEQPVEA+TNILFS
Sbjct: 299 VDAQSPMAIVIPTKGSNFSMKLRDGDISWRDFLERVNNLRGNEFAAVEQPVEAYTNILFS 358
Query: 366 SGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS 425
SGTTGEPKAIPW NATP KAAADAWCHMDIRK DIVAWPTNLGWMMGPWLVYASLLNGA
Sbjct: 359 SGTTGEPKAIPWINATPLKAAADAWCHMDIRKGDIVAWPTNLGWMMGPWLVYASLLNGAC 418
Query: 426 IALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 485
IALYNGSP+GSGFAKFVQDAKVT+LGV+PSIVRTWKSTNC GYDWS+IRCFGSTGEASN
Sbjct: 419 IALYNGSPIGSGFAKFVQDAKVTILGVIPSIVRTWKSTNCTAGYDWSAIRCFGSTGEASN 478
Query: 486 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC 545
VDEYLWLMGRA YKP+IEYCGGTEIGG FITGSLLQ QSLAAFSTP MGC LFILGNDG
Sbjct: 479 VDEYLWLMGRAHYKPIIEYCGGTEIGGAFITGSLLQPQSLAAFSTPTMGCSLFILGNDGY 538
Query: 546 PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGY 605
PIP NVPGMGELAL L+FGASS+LLN +HY VY+ GMP NG+ILRRHGDVFERTS GY
Sbjct: 539 PIPHNVPGMGELALGSLMFGASSSLLNGDHYKVYYKGMPVWNGKILRRHGDVFERTSRGY 598
Query: 606 YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 665
Y AHGRADDTMNLGGIKVSSVE+ER+CNA DS++LETAAIGVPPP GGPE+L I VVFK
Sbjct: 599 YHAHGRADDTMNLGGIKVSSVELERLCNAADSSILETAAIGVPPPQGGPERLVIAVVFKH 658
Query: 666 SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 725
+ + PDL +L+ SFNS VQKKLNPLF+VS VVPLPSLPRTATNKVMRR+LR++ Q +Q
Sbjct: 659 PDNSTPDLEELKKSFNSVVQKKLNPLFRVSRVVPLPSLPRTATNKVMRRILRQRFVQREQ 718
Query: 726 NSKL 729
NSKL
Sbjct: 719 NSKL 722
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567690|ref|XP_003552050.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1180 bits (3053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/724 (77%), Positives = 635/724 (87%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSF 65
YK+L IT DIE+ GI + A LH LAEI+ THG TPATWQ+++ IL+P+LPFSF
Sbjct: 4 YKSLSSITVSDIESHGIAREDAATLHHGLAEIIETHGNGTPATWQHVSNSILNPELPFSF 63
Query: 66 HQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEF 125
HQ+LYYGCYKD+G DPPAWIPDPE+A +TNV KLL+ +GEEFL S YKDPI+SF +FQ+F
Sbjct: 64 HQMLYYGCYKDYGSDPPAWIPDPESAALTNVWKLLERKGEEFLCSAYKDPITSFDDFQKF 123
Query: 126 SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSV 185
SVSNPE+YWK VL+EMS SFS PP+CILR++P+GE+ LS+P GQWLPGA +NPA+NCL+V
Sbjct: 124 SVSNPEIYWKCVLDEMSISFSKPPECILRDSPSGESPLSHPSGQWLPGASINPAQNCLNV 183
Query: 186 NSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
N KRSL+D VI W DE LP++ MTL+ELR EVWLVAYAL +LGL+KGSAIAIDMPMN
Sbjct: 184 NGKRSLNDTVIIWRDEQLDDLPLQRMTLEELRDEVWLVAYALKSLGLEKGSAIAIDMPMN 243
Query: 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRV 305
V SVVIYLAIVLA Y+VVSIADSFA+ EIS RL+ISKAK IFTQDLI+RGDKSIPLYSRV
Sbjct: 244 VKSVVIYLAIVLASYVVVSIADSFAASEISTRLKISKAKVIFTQDLIMRGDKSIPLYSRV 303
Query: 306 IDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFS 365
+DAQ+P+A+VIP KGS FSMKLR+GD+SW DFLE+V LK EF A EQP+E FTNILFS
Sbjct: 304 VDAQSPMAVVIPTKGSEFSMKLRNGDVSWHDFLEKVNNLKGKEFIATEQPIETFTNILFS 363
Query: 366 SGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS 425
SGTTG+PKAIPWTN TP KAAADAWCHMD+RK D+V WPTNLGWMMGPWLVYASLLNGAS
Sbjct: 364 SGTTGDPKAIPWTNITPLKAAADAWCHMDVRKGDVVCWPTNLGWMMGPWLVYASLLNGAS 423
Query: 426 IALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 485
+ALY GSPLGS FAKFVQDAKVTMLGV+PSIVR+W+STN GYDWSSIRCFGSTGEASN
Sbjct: 424 VALYIGSPLGSAFAKFVQDAKVTMLGVIPSIVRSWRSTNSTSGYDWSSIRCFGSTGEASN 483
Query: 486 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC 545
VDEYLWLMGRALYKP+IEYCGGTEIGGGF+ GSLLQAQSLAAFSTPAM C LFIL ++G
Sbjct: 484 VDEYLWLMGRALYKPIIEYCGGTEIGGGFVCGSLLQAQSLAAFSTPAMCCSLFILDDEGL 543
Query: 546 PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGY 605
PIPQNVPG+GELAL PL+ GAS+TLLNA+HY VYF GMP NG++LRRHGDVFERT+ GY
Sbjct: 544 PIPQNVPGIGELALGPLMLGASNTLLNADHYGVYFKGMPLLNGKVLRRHGDVFERTARGY 603
Query: 606 YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 665
Y AHGR+DDTMNLGGIKVSSVEIERICN VDS++LETAAIGVPP GGPE LTI VVFKD
Sbjct: 604 YHAHGRSDDTMNLGGIKVSSVEIERICNGVDSSILETAAIGVPPSGGGPELLTIAVVFKD 663
Query: 666 SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 725
SN T DL+QLRMSFNSA+QKKLNPLF+VS VV LPSLPRTA+NKVMRRVLR+QL++ +Q
Sbjct: 664 SNSTKQDLHQLRMSFNSALQKKLNPLFRVSQVVTLPSLPRTASNKVMRRVLRQQLSETNQ 723
Query: 726 NSKL 729
NSK+
Sbjct: 724 NSKI 727
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556613|ref|XP_003546618.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/724 (76%), Positives = 636/724 (87%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSF 65
YK+L IT DIE+ GI + A LH+ LAEI+ TH TPATWQ+++ IL+P+LPFSF
Sbjct: 21 YKSLSSITVSDIESHGIAREDAATLHQGLAEIIETHSNGTPATWQHVSNSILNPELPFSF 80
Query: 66 HQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEF 125
HQ+LYYGCYKD+GPDPPAWIP+ E+A +TNV +LL+ +GEEFLGS YKDPI+SF +FQ+F
Sbjct: 81 HQMLYYGCYKDYGPDPPAWIPNRESAALTNVWQLLERKGEEFLGSAYKDPITSFDDFQKF 140
Query: 126 SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSV 185
SVSNPE+YWK V +EMS SFS PP+CILR++P+GE+ LS+P GQWLPGA +NPA+NCL+V
Sbjct: 141 SVSNPEIYWKCVWDEMSISFSKPPECILRDSPSGESPLSHPSGQWLPGASINPAQNCLNV 200
Query: 186 NSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
N KRSL+D VI W DE LP + MTL+ELR EVWLVAYAL +LGL+KGSAIAIDMPMN
Sbjct: 201 NGKRSLNDTVIIWRDEQHDDLPRQRMTLEELREEVWLVAYALQSLGLEKGSAIAIDMPMN 260
Query: 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRV 305
V SVVIYLAIVLA Y+VVSIADSFA+ EIS RL+ISKAK IFTQDLI+RGDKSIPLYSRV
Sbjct: 261 VKSVVIYLAIVLASYVVVSIADSFAASEISTRLKISKAKVIFTQDLIMRGDKSIPLYSRV 320
Query: 306 IDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFS 365
+DAQ+P+A+VIPAKGS FSMKLR+GD+SW DFLE+V LK EF A EQP+E FTNILFS
Sbjct: 321 VDAQSPMAVVIPAKGSEFSMKLRNGDLSWHDFLEKVNNLKGKEFIATEQPIETFTNILFS 380
Query: 366 SGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS 425
SGTTG+PKAIPWTN TP KAAADAWCHMD+RK D+V WPTNLGWMMGPWLVYASLLNGAS
Sbjct: 381 SGTTGDPKAIPWTNITPLKAAADAWCHMDVRKGDVVCWPTNLGWMMGPWLVYASLLNGAS 440
Query: 426 IALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 485
+ALY GSPLGSGFAKFVQDAKVTMLGV+PSIVR+W+STN GYDWSSIRCFGSTGEASN
Sbjct: 441 MALYIGSPLGSGFAKFVQDAKVTMLGVIPSIVRSWRSTNSTSGYDWSSIRCFGSTGEASN 500
Query: 486 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC 545
VDEYLWLMGRALYKP+IEYCGGTEIGGGF+ GSLLQAQSLAAFSTPAM C LFIL ++G
Sbjct: 501 VDEYLWLMGRALYKPIIEYCGGTEIGGGFVCGSLLQAQSLAAFSTPAMCCSLFILDDEGL 560
Query: 546 PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGY 605
PIPQNVPG+GELAL PL+ GAS+TLLNA+HY VYF GMP NG++LRRHGDVFERT+ GY
Sbjct: 561 PIPQNVPGIGELALGPLMLGASNTLLNADHYGVYFKGMPLLNGKVLRRHGDVFERTAKGY 620
Query: 606 YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 665
Y AHGR+DDTMNLGGIKVSSVEIERICN VDS++LETAAIGVPP GGPE LTI VVFKD
Sbjct: 621 YHAHGRSDDTMNLGGIKVSSVEIERICNGVDSSILETAAIGVPPSGGGPELLTIAVVFKD 680
Query: 666 SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 725
SN T DL+QLRMSFNSA+QKKLNPLF+VS VV LPSLPRTA+NKVMRRVLR+QL++ +Q
Sbjct: 681 SNSTNQDLHQLRMSFNSALQKKLNPLFRVSQVVTLPSLPRTASNKVMRRVLRQQLSETNQ 740
Query: 726 NSKL 729
NSK+
Sbjct: 741 NSKI 744
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130076|ref|XP_002328648.1| predicted protein [Populus trichocarpa] gi|222838824|gb|EEE77175.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1154 bits (2985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/663 (82%), Positives = 606/663 (91%), Gaps = 1/663 (0%)
Query: 68 LLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSV 127
++YYGC+KDFGPDPPAW PDPEAA +TNVG+LL+ RG+EFLGS YKDPISSFSNFQEFSV
Sbjct: 1 MMYYGCFKDFGPDPPAWSPDPEAAMLTNVGQLLERRGKEFLGSAYKDPISSFSNFQEFSV 60
Query: 128 SNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNS 187
SNPEVYWKT+L+EMS SFSVPPQCIL EN + E+ L+NPGGQWLPGA+VNPAK CL++N
Sbjct: 61 SNPEVYWKTILDEMSISFSVPPQCILSENTSRESSLANPGGQWLPGAYVNPAKTCLTLNC 120
Query: 188 KRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWL-VAYALNALGLDKGSAIAIDMPMNV 246
KR+LDD+VIRW DEG+ +PV S+TL+ELR+EVW VAYALNALGLD+GSAIAIDMPMNV
Sbjct: 121 KRNLDDVVIRWRDEGNDDMPVSSLTLEELRSEVWYAVAYALNALGLDRGSAIAIDMPMNV 180
Query: 247 NSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVI 306
SV+IYLAIVLAG++VVSIADSFA LEIS RL+IS+AKAIFTQDLIIRGDKSIPLYSRV+
Sbjct: 181 ESVIIYLAIVLAGHVVVSIADSFAPLEISTRLKISEAKAIFTQDLIIRGDKSIPLYSRVV 240
Query: 307 DAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSS 366
AQAP+AIV+P KG SFSM LRDGDISW DFLE+ L+ +EFAAVEQPVEAFTNILFSS
Sbjct: 241 HAQAPMAIVLPTKGCSFSMNLRDGDISWHDFLEKATDLRGDEFAAVEQPVEAFTNILFSS 300
Query: 367 GTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASI 426
GTTGEPKAIPWT+ TPFKAAADAWCHMDIRK DIVAWPTNLGWMMGPWLVYASLLNGASI
Sbjct: 301 GTTGEPKAIPWTHLTPFKAAADAWCHMDIRKGDIVAWPTNLGWMMGPWLVYASLLNGASI 360
Query: 427 ALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV 486
ALYNGSPLGSGFAKFVQDA VTMLGV+PSIVR WKS N GYDWS+IRCF STGEAS+V
Sbjct: 361 ALYNGSPLGSGFAKFVQDASVTMLGVIPSIVRIWKSANSTSGYDWSAIRCFASTGEASSV 420
Query: 487 DEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCP 546
DEYLWLMGRA YKP+IEYCGGTEIGGGF++GSLLQ QSLAAFSTPAMGC LFILG+DG P
Sbjct: 421 DEYLWLMGRAQYKPIIEYCGGTEIGGGFVSGSLLQPQSLAAFSTPAMGCSLFILGDDGHP 480
Query: 547 IPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYY 606
IPQNVPGMGELAL PL+FGASSTLLNA+HY+VYF GMP NG+ILRRHGDVFERTS GYY
Sbjct: 481 IPQNVPGMGELALGPLMFGASSTLLNADHYNVYFKGMPLWNGKILRRHGDVFERTSRGYY 540
Query: 607 RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS 666
AHGRADDTMNLGGIKVSSVEIER+CNAVDSNVLETAA+GVPPP GGPEQL I VVFKDS
Sbjct: 541 HAHGRADDTMNLGGIKVSSVEIERVCNAVDSNVLETAAVGVPPPQGGPEQLVIAVVFKDS 600
Query: 667 NYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 726
+ + DL++LR+S+NSAVQKKLNPLF++SHVVP SLPRTATNKVMRRVLR+QL+Q DQN
Sbjct: 601 DESTVDLDKLRISYNSAVQKKLNPLFRISHVVPFSSLPRTATNKVMRRVLRQQLSQQDQN 660
Query: 727 SKL 729
SKL
Sbjct: 661 SKL 663
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734139|emb|CBI15386.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1136 bits (2939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/662 (80%), Positives = 598/662 (90%)
Query: 68 LLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSV 127
++YYGCY FGPDPPAW+PDPE +TNVG+LL+ RG+EFLGS YKDPISSFS+FQ+FSV
Sbjct: 1 MMYYGCYSHFGPDPPAWLPDPENVMLTNVGQLLERRGKEFLGSRYKDPISSFSDFQKFSV 60
Query: 128 SNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNS 187
SNPEVYWKTVL+E+S SFSVPPQC+L +NP+ EN LS PGGQWLPGAF+NPA+NCLSVN
Sbjct: 61 SNPEVYWKTVLDELSISFSVPPQCVLYDNPSRENGLSYPGGQWLPGAFINPARNCLSVND 120
Query: 188 KRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247
KR+LDD V+ W DEGD G+P+ MTL+ELR EVW VAYAL+ LGL+KGSAIAIDMPMN +
Sbjct: 121 KRTLDDTVVIWHDEGDDGMPINRMTLEELRREVWSVAYALDTLGLEKGSAIAIDMPMNAS 180
Query: 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVID 307
SVVIYLAIVLAGYIVVSIADSFAS EIS RL+IS AKAIFTQD IIRGDKS+PLYSRV+D
Sbjct: 181 SVVIYLAIVLAGYIVVSIADSFASREISTRLKISNAKAIFTQDFIIRGDKSLPLYSRVVD 240
Query: 308 AQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSG 367
AQ+P AIVIPA GSSFSMKLRDGD+SW DFL+R +++EFAA+EQP+EAF NILFSSG
Sbjct: 241 AQSPTAIVIPAGGSSFSMKLRDGDMSWHDFLQRAINSRDDEFAAIEQPIEAFMNILFSSG 300
Query: 368 TTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIA 427
TTGEPKAIPWTNATP KAAADAWCHMDIRK DIVAWPTNLGWMMGPWLVYASLLNGA+IA
Sbjct: 301 TTGEPKAIPWTNATPLKAAADAWCHMDIRKGDIVAWPTNLGWMMGPWLVYASLLNGATIA 360
Query: 428 LYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVD 487
LYNG+PLGSGFAKFVQDAKVTMLGV+PSIVRTWKSTNC G DWSSIRCF STGEAS+VD
Sbjct: 361 LYNGAPLGSGFAKFVQDAKVTMLGVIPSIVRTWKSTNCTAGLDWSSIRCFASTGEASSVD 420
Query: 488 EYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPI 547
EYLWLMGRA YKP+IEYCGGTEIGGGF+TGSLLQAQSLA+FSTPAMGC LFI+G+DG +
Sbjct: 421 EYLWLMGRAQYKPIIEYCGGTEIGGGFVTGSLLQAQSLASFSTPAMGCSLFIIGDDGNLL 480
Query: 548 PQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYR 607
PQ+ GMGELAL PL+FGAS+TLLNA+HYDVYF GMP NG++LRRHGDVFERTS GYYR
Sbjct: 481 PQDASGMGELALGPLMFGASTTLLNADHYDVYFKGMPIWNGKVLRRHGDVFERTSRGYYR 540
Query: 608 AHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSN 667
AHGRADDTMN+GGIKVSSVEIERICN V S+VLETAAIG+PPP GGPE+L IVVVFKDSN
Sbjct: 541 AHGRADDTMNIGGIKVSSVEIERICNTVHSSVLETAAIGMPPPAGGPERLMIVVVFKDSN 600
Query: 668 YTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQNS 727
+ PDLN+LR++FNS VQKKLNPLF+VSH VP+PSLPRTATNKVMRRVLR+QLAQL S
Sbjct: 601 NSIPDLNELRIAFNSEVQKKLNPLFRVSHTVPVPSLPRTATNKVMRRVLRQQLAQLSSTS 660
Query: 728 KL 729
K
Sbjct: 661 KF 662
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440895|ref|XP_004138219.1| PREDICTED: probable acyl-activating enzyme 17, peroxisomal-like [Cucumis sativus] gi|449477120|ref|XP_004154935.1| PREDICTED: probable acyl-activating enzyme 17, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/725 (74%), Positives = 629/725 (86%), Gaps = 1/725 (0%)
Query: 5 NYKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFS 64
+YK LD IT DIEALG+ S+LA+QLH L EI+ T+G TPATW +I+ +L+PDLPFS
Sbjct: 2 DYKPLDSITVIDIEALGVGSQLAKQLHGSLGEIIRTYGNGTPATWLHISKKLLTPDLPFS 61
Query: 65 FHQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQE 124
FHQ++YYGCYK+FGPDPPAWIP+PE A TNVGKLL+ RG+EF+GS Y DP+SSFS+FQE
Sbjct: 62 FHQMMYYGCYKNFGPDPPAWIPEPENAVFTNVGKLLEKRGKEFMGSSYSDPLSSFSSFQE 121
Query: 125 FSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLS 184
FSVSNPEVYW+TVL+EM+ +FS PP CIL+ N + E+ S+PGGQWLPGA NPAK+CLS
Sbjct: 122 FSVSNPEVYWRTVLDEMNITFSKPPNCILQINDSPESKFSSPGGQWLPGAVFNPAKDCLS 181
Query: 185 VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM 244
+N RSLDD+ I W DEG LP+K +TL+ELRAEVWLVA+ALN++G +KG+AIAIDMPM
Sbjct: 182 LNENRSLDDVAIIWRDEGYDDLPLKRLTLRELRAEVWLVAHALNSIGFEKGTAIAIDMPM 241
Query: 245 NVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSR 304
NVN+VVIYLAIVLAG++VVSIADSFA+ EIS RL ISKAKAIFTQDLIIRGDKSIPLYSR
Sbjct: 242 NVNAVVIYLAIVLAGHVVVSIADSFAAREISTRLDISKAKAIFTQDLIIRGDKSIPLYSR 301
Query: 305 VIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF 364
V+DAQAPLAIVIP + FSMKLRDGDISW FL++V+ LK EF AVEQ E+FTNILF
Sbjct: 302 VVDAQAPLAIVIPTNSTGFSMKLRDGDISWHAFLDKVKDLKGVEFDAVEQSAESFTNILF 361
Query: 365 SSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGA 424
SSGTTGEPKAIPWT TP KAAADAWCHMDI K D+VAWPTNLGWMMGPWLVYASLLN A
Sbjct: 362 SSGTTGEPKAIPWTLVTPLKAAADAWCHMDIHKGDVVAWPTNLGWMMGPWLVYASLLNKA 421
Query: 425 SIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEAS 484
S+ALYNGSPL SGF KF+QDAK TMLGV+PSIVR+WKSTNC GYDWSSIRCF STGEAS
Sbjct: 422 SMALYNGSPLSSGFVKFIQDAKTTMLGVIPSIVRSWKSTNCTSGYDWSSIRCFASTGEAS 481
Query: 485 NVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG 544
+VDEYLWLMGRA YKP+IEYCGGTEIGGGF+TGS+LQAQ+LAAFSTPAMGC LFILG+DG
Sbjct: 482 SVDEYLWLMGRACYKPIIEYCGGTEIGGGFVTGSMLQAQALAAFSTPAMGCSLFILGDDG 541
Query: 545 CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGG 604
PIPQN+PG+GELAL P +FGASS+LLNA+HYD+YF GMP NG ++RRHGD+FER+ G
Sbjct: 542 SPIPQNMPGIGELALGPFMFGASSSLLNADHYDIYFKGMPIWNGMLMRRHGDLFERSPRG 601
Query: 605 YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFK 664
+YRAHGRADDTMNLGGIKVSSVEIERICN V++++LETAAIGVPP GGPE+L I +VFK
Sbjct: 602 FYRAHGRADDTMNLGGIKVSSVEIERICNTVNNSILETAAIGVPPQGGGPERLVIAIVFK 661
Query: 665 DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724
+ + T DL++L+ SFNSA+QK LNPLF+V VVP PSLPRTATNKVMRR+LR+QL L+
Sbjct: 662 NPSETSIDLDKLKQSFNSAIQKNLNPLFRVHRVVPYPSLPRTATNKVMRRILRQQLT-LE 720
Query: 725 QNSKL 729
+KL
Sbjct: 721 HKTKL 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042362|gb|AFD33345.1| acyl-activating enzyme 1 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1085 bits (2805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/722 (71%), Positives = 598/722 (82%), Gaps = 7/722 (0%)
Query: 5 NYKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFS 64
NYK+LD + + D ALGI S++AE LH +LAEIV +GAATP TW NI HILSPDLPFS
Sbjct: 4 NYKSLDSVVASDFIALGITSEVAETLHGRLAEIVCNYGAATPQTWINIANHILSPDLPFS 63
Query: 65 FHQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQE 124
HQ+L+YGCYKDFGP PPAWIPDPE K TN+G LL+ RG+EFLG YKDPISSFS+FQE
Sbjct: 64 LHQMLFYGCYKDFGPAPPAWIPDPEKVKSTNLGALLEKRGKEFLGVKYKDPISSFSHFQE 123
Query: 125 FSVSNPEVYWKTVL-NEMSTSFSVPPQCILRENPNGENHLSNPGG-QWLPGAFVNPAKNC 182
FSV NPEVYW+TVL +EM SFS P+CILR + ++NPGG +WLPG ++N AKNC
Sbjct: 124 FSVRNPEVYWRTVLMDEMKISFSKDPECILRRD-----DINNPGGSEWLPGGYLNSAKNC 178
Query: 183 LSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDM 242
L+VNS + L+D +I W DEG+ LP+ +TL +LR VWLV YAL +GL+KG AIAIDM
Sbjct: 179 LNVNSNKKLNDTMIVWRDEGNDDLPLNKLTLDQLRKRVWLVGYALEEMGLEKGCAIAIDM 238
Query: 243 PMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY 302
PM+V++VVIYLAIVLAGY+VVSIADSF++ EIS RLR+SKAKAIFTQD IIRG K IPLY
Sbjct: 239 PMHVDAVVIYLAIVLAGYVVVSIADSFSAPEISTRLRLSKAKAIFTQDHIIRGKKRIPLY 298
Query: 303 SRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNI 362
SRV++A++P+AIVIP GS+ +LRDGDISW FLER ++ K EF A EQPV+A+TNI
Sbjct: 299 SRVVEAKSPMAIVIPCSGSNIGAELRDGDISWDYFLERAKEFKNCEFTAREQPVDAYTNI 358
Query: 363 LFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLN 422
LFSSGTTGEPKAIPWT ATP KAAAD W H+DIRK D++ WPTNLGWMMGPWLVYASLLN
Sbjct: 359 LFSSGTTGEPKAIPWTQATPLKAAADGWSHLDIRKGDVIVWPTNLGWMMGPWLVYASLLN 418
Query: 423 GASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGE 482
GASIALYNGSPL SGFAKFVQDAKVTMLGVVPSIVR+WKSTNC+ GYDWS+IRCF S+GE
Sbjct: 419 GASIALYNGSPLVSGFAKFVQDAKVTMLGVVPSIVRSWKSTNCVSGYDWSTIRCFSSSGE 478
Query: 483 ASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGN 542
ASNVDEYLWLMGRA YKPVIE CGGTEIGG F GS LQAQSL++FS+ MGC L+IL
Sbjct: 479 ASNVDEYLWLMGRANYKPVIEMCGGTEIGGAFSAGSFLQAQSLSSFSSQCMGCTLYILDK 538
Query: 543 DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTS 602
+G P+P+N PG+GELAL P++FGAS TLLN NH+DVYF GMP+ NG++LRRHGD+FE TS
Sbjct: 539 NGYPMPKNKPGIGELALGPVMFGASKTLLNGNHHDVYFKGMPTLNGEVLRRHGDIFELTS 598
Query: 603 GGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVV 662
GYY AHGRADDTMN+GGIK+SS+EIER+CN VD V ET AIGVPP GGPEQL I V
Sbjct: 599 NGYYHAHGRADDTMNIGGIKISSIEIERVCNEVDDRVFETTAIGVPPLGGGPEQLVIFFV 658
Query: 663 FKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722
KDSN T DLNQLR+SFN +QKKLNPLFKV+ VVPL SLPRTATNK+MRRVLR+Q +
Sbjct: 659 LKDSNDTTIDLNQLRLSFNLGLQKKLNPLFKVTRVVPLSSLPRTATNKIMRRVLRQQFSH 718
Query: 723 LD 724
+
Sbjct: 719 FE 720
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297812451|ref|XP_002874109.1| acyl-activating enzyme 17 [Arabidopsis lyrata subsp. lyrata] gi|297319946|gb|EFH50368.1| acyl-activating enzyme 17 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/725 (72%), Positives = 612/725 (84%), Gaps = 7/725 (0%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPA-TWQNITTHILSPDLPFS 64
YK+L+ IT DIEALGI ++E+L + L EI+ HG++ P TW I+ IL P+LPFS
Sbjct: 3 YKSLNSITRSDIEALGISGDVSEKLLKDLDEII--HGSSMPPDTWIQISRRILHPNLPFS 60
Query: 65 FHQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQE 124
FHQ++YYGCYKDFGPDPPAW+PDP+ A +TNVGKLL+ RG+EFLG YK+PISSFS+FQE
Sbjct: 61 FHQMMYYGCYKDFGPDPPAWLPDPKVASLTNVGKLLERRGKEFLGENYKNPISSFSSFQE 120
Query: 125 FSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLS 184
FSVSNPEVYWKTVL+E++ FSVPP+CIL ++ +G+N PGG WLPGA++NPA+NCL+
Sbjct: 121 FSVSNPEVYWKTVLDELNIVFSVPPKCILEKDTSGDN----PGGNWLPGAYLNPARNCLT 176
Query: 185 VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM 244
KR LDDIVIRW DEG LPV +MTL ELR++VWL A+AL+AL L++ SAIA+DMPM
Sbjct: 177 NGFKRRLDDIVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALDLEEESAIAVDMPM 236
Query: 245 NVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSR 304
NV SV+IYLAIVLAG++VVSIADSF+ EIS RL+ISKAKAIFTQD+IIRGDKSIPLY R
Sbjct: 237 NVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPLYRR 296
Query: 305 VIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF 364
VIDA+APLAIV+PA+GSS MKLR+ D+SW +FL + R L+ E+ AVE+P A+TNILF
Sbjct: 297 VIDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGKARNLRGVEYVAVEKPAGAYTNILF 356
Query: 365 SSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGA 424
SSGTTGEPKAIPWTN +P K+AADAWCH+D+ + D+VAWPTNLGWMMGPWLVYASL+NGA
Sbjct: 357 SSGTTGEPKAIPWTNISPLKSAADAWCHLDVHRGDVVAWPTNLGWMMGPWLVYASLINGA 416
Query: 425 SIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEAS 484
+ALYNGSPLG FAKFVQDA+VT+LGV+PSIVRTW+++N GYDWS IRCFGSTGEAS
Sbjct: 417 CMALYNGSPLGPTFAKFVQDAEVTVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGSTGEAS 476
Query: 485 NVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG 544
N+DEYLWLMGRA YKPVIEYCGGTEIGG FI+GSLLQ QSLAAFST MGCKLFILG DG
Sbjct: 477 NIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAVMGCKLFILGEDG 536
Query: 545 CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGG 604
PIP G+GELAL P +FGASSTLLN NH+ VYF GMP+ GQILRRHGD+FERTS G
Sbjct: 537 NPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFERTSKG 596
Query: 605 YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFK 664
YYRAHGRADDTMNLGGIKV S+EIER+CN+VD +VLETAAIGVPPP GGPEQL I VVFK
Sbjct: 597 YYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVIAVVFK 656
Query: 665 DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724
+ DLN L+ SFNS +QKKLNPLFKVS VV LPSLPRTATNKVMRRVLR+QL Q
Sbjct: 657 SPEISKHDLNVLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVLRQQLTQTS 716
Query: 725 QNSKL 729
NSKL
Sbjct: 717 LNSKL 721
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| TAIR|locus:2178277 | 721 | AAE17 "acyl-activating enzyme | 0.984 | 0.995 | 0.706 | 4.3e-283 | |
| TAIR|locus:2035721 | 727 | AAE18 "acyl-activating enzyme | 0.969 | 0.972 | 0.482 | 6e-183 | |
| TIGR_CMR|BA_2553 | 646 | BA_2553 "acetoacetyl-CoA synth | 0.783 | 0.883 | 0.297 | 1.5e-53 | |
| UNIPROTKB|P27550 | 652 | acs [Escherichia coli K-12 (ta | 0.727 | 0.812 | 0.284 | 1.5e-40 | |
| ZFIN|ZDB-GENE-050320-139 | 693 | acss1 "acyl-CoA synthetase sho | 0.796 | 0.838 | 0.263 | 2.1e-36 | |
| UNIPROTKB|Q9KV59 | 649 | acsA "Acetyl-coenzyme A synthe | 0.737 | 0.828 | 0.268 | 9e-36 | |
| TIGR_CMR|VC_0298 | 649 | VC_0298 "acetyl-CoA synthase" | 0.737 | 0.828 | 0.268 | 9e-36 | |
| TIGR_CMR|SO_2743 | 650 | SO_2743 "acetyl-coenzyme A syn | 0.779 | 0.873 | 0.260 | 2e-35 | |
| TIGR_CMR|CPS_3955 | 648 | CPS_3955 "acetyl-CoA synthetas | 0.740 | 0.833 | 0.275 | 5.8e-35 | |
| FB|FBgn0012034 | 670 | AcCoAS "Acetyl Coenzyme A synt | 0.803 | 0.874 | 0.270 | 7e-35 |
| TAIR|locus:2178277 AAE17 "acyl-activating enzyme 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2720 (962.5 bits), Expect = 4.3e-283, P = 4.3e-283
Identities = 512/725 (70%), Positives = 601/725 (82%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPA-TWQNITTHILSPDLPFS 64
YK+L+ IT DIEALGI ++E+L L +I+ HG++TP TW I+ IL P+LPFS
Sbjct: 3 YKSLNSITKSDIEALGISGDVSEKLLRDLEDII--HGSSTPPETWIQISRRILHPNLPFS 60
Query: 65 FHQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQE 124
FHQ++YYGCYKDFGPD PAWIPDP+ A +TNVGKLL+ RG+EFLG YK+P+SSFS+FQE
Sbjct: 61 FHQMMYYGCYKDFGPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSFSSFQE 120
Query: 125 FSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLS 184
FSVSNPEVYWKTVL+E++ FSVPP+CIL ++ +G+N PGG+WLPGA++NPA+NCL+
Sbjct: 121 FSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDN----PGGKWLPGAYLNPARNCLT 176
Query: 185 VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM 244
KR LDDIVIRW DEG LPV +MTL ELR++VWL A+AL+ALGL++ SAIA+DMPM
Sbjct: 177 NGFKRRLDDIVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVDMPM 236
Query: 245 NVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSR 304
NV SV+IYLAIVLAG++VVSIADSF+ EIS RL+ISKAKAIFTQD+IIRGDKSIPLY R
Sbjct: 237 NVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPLYRR 296
Query: 305 VIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF 364
V+DA+APLAIV+PA+GSS MKLR+ D+SW +FL R L+ E+ A E+P A+TNILF
Sbjct: 297 VVDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGNARNLRGVEYVAAEKPAGAYTNILF 356
Query: 365 SSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGA 424
SSGTTGEPKAIPWTN +P K+AADAWCH+D+++ D+VAWPTNLGWMMGPWLVYASL+NGA
Sbjct: 357 SSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYASLINGA 416
Query: 425 SIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEAS 484
+ LYNGSPLG FAKFVQDA+V++LGV+PSIVRTW+++N GYDWS IRCFGSTGEAS
Sbjct: 417 CMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGSTGEAS 476
Query: 485 NVDEYLWLMGRALYKPVIEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDG 544
N+DEYLWLMGRA YKPVIEYC SLLQ QSLAAFST AMGCKLFIL D
Sbjct: 477 NIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFILDEDS 536
Query: 545 CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGG 604
PIP G+GELAL P +FGASSTLLN NH+ VYF GMP+ GQILRRHGD+FERTS G
Sbjct: 537 NPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFERTSKG 596
Query: 605 YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFK 664
YYRAHGRADDTMNLGGIKV S+EIER+CN+VD +VLETAAIGVPPP GGPEQL I VVFK
Sbjct: 597 YYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVIAVVFK 656
Query: 665 DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724
++ PDLN L+ SFNS +QKKLNPLFKVS VV LPSLPRTATNKVMRRVLR+QL Q
Sbjct: 657 SPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVLRQQLTQTG 716
Query: 725 QNSKL 729
NSKL
Sbjct: 717 LNSKL 721
|
|
| TAIR|locus:2035721 AAE18 "acyl-activating enzyme 18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1775 (629.9 bits), Expect = 6.0e-183, P = 6.0e-183
Identities = 351/727 (48%), Positives = 472/727 (64%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPAT-WQNITTH-ILSPDLPF 63
+K++ ++ D G+ + A++ + +++++ P W+ + +L P P
Sbjct: 2 WKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHPH 61
Query: 64 SFHQLLYYGCYKDFGPD---PPA-WIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSF 119
HQLLYY Y ++ PP W P +K TN+GKL++ G LG YK+P+ SF
Sbjct: 62 PLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLESF 121
Query: 120 SNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPA 179
F+ FSV +PEVYW V++E+S F PP+CIL + S P G WLP A +N A
Sbjct: 122 ELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILNK--------SKPEGTWLPDAVLNIA 173
Query: 180 KNCLSVNS--KRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSA 237
+ CL +S K+ D + + W +EG PV MT+KELR +V LVA A++ +KG
Sbjct: 174 ECCLMPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISG-SFEKGDT 232
Query: 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDK 297
IAIDMPM V++V+IYLAI+LAG IVVSIADSFA+ EI+ RL+ISKAK IFTQD I+RG +
Sbjct: 233 IAIDMPMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGR 292
Query: 298 SIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLK--ENEFAAVEQP 355
PLYSRV++A IV+PA G+ ++LR+ D+SW+DFL + EN + + P
Sbjct: 293 RFPLYSRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLP 352
Query: 356 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL 415
VE+ NILFSSGTTGEPKAIPWT +P ++A D W H+D++ WPTNLGW+MGP L
Sbjct: 353 VESVINILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTL 412
Query: 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 475
+++ L GA++ALY+GSPLG GF KFVQDA VT+LG VPS+V+TWK TNC++G +W+ I+
Sbjct: 413 MFSCFLTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIK 472
Query: 476 CFGSTGEASNVDEYLWLMGRALYKPVIEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGC 535
F +TGEASNVD+ LWL +A YKPVIE C S LQ Q+ AFSTP+M
Sbjct: 473 FFATTGEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTT 532
Query: 536 KLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG 595
++ I +G P P + P GE+ L P GA+ LLNANH +VYF GMP LRRHG
Sbjct: 533 RIIIFDENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHG 592
Query: 596 DVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 655
D+ +RT GGYY GRADDTMNLGGIK SS+EIER+C+ D + ETAA+ + PP+GGPE
Sbjct: 593 DIVKRTVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTPPNGGPE 652
Query: 656 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRV 715
L I V K+ + +L+M F+ +QK LNPLFKVS V +P PRTA++K++RRV
Sbjct: 653 LLVIFAVLKEG-FKQQSGEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASSKLLRRV 711
Query: 716 LRKQLAQ 722
LR Q+ Q
Sbjct: 712 LRDQIKQ 718
|
|
| TIGR_CMR|BA_2553 BA_2553 "acetoacetyl-CoA synthase, putative" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 186/626 (29%), Positives = 294/626 (46%)
Query: 111 GYKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQW 170
GY+D + F S+ +W + + P +L + NG P QW
Sbjct: 26 GYED----YETFYNKSIEETAWFWGEAEKVVGYQWMKPYTEVL-DLQNG-----TPFAQW 75
Query: 171 LPGAFVNPAKNCLS--VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
G N ++ LS + + +++ EG+ G KS T +EL + V A L
Sbjct: 76 YNGGTCNVVESVLSRWLADDETRTQPALQY--EGENGTS-KSFTYEELDSWVSRAANGLK 132
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
G++KG + I MPM +VV LA++ G I+ I FAS + R++ + +K I T
Sbjct: 133 HAGIEKGDRVTIYMPMIPETVVAMLAVMKIGAIISPIFSGFASDAVMTRVQAAGSKMIIT 192
Query: 289 QDLIIRGDKSIPLYSRVIDA--QAPLA---IVIPAKGSSFSMKLRDGDISWLDFLERVRK 343
D R K + L V A P +++ G+ F+ + D SW LE+ +
Sbjct: 193 ADGFSRRGKIVSLKDEVDKACEHCPTVEKVVIVRHAGNDFTP--HNYDFSW-STLEKEKP 249
Query: 344 LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT-PFKAAADAWCHMDIRKADIVA 402
E + P+ ++++SGTTG+PK T+A P KAA DA M+I++ D V
Sbjct: 250 FVHAEEMHSDDPLM----LIYTSGTTGKPKGTVHTHAGFPLKAAFDAGFGMNIKQGDRVL 305
Query: 403 WPTNLGWMMGPWLVYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRT 459
W T++GWMMGP+L++ SL+NGA++ +Y G P + V ++T LG+ P+++R
Sbjct: 306 WVTDMGWMMGPFLLFGSLINGATMVMYEGVPDFPKADRLWETVDKYEITHLGISPTLIRA 365
Query: 460 W--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWL---MGRALYKPVIEYCXXXXXXXXX 514
K ++ + S+ F STGE N D ++WL +G++ P+ Y
Sbjct: 366 LMAKGDEYVNKHSLKSLEVFASTGEPWNPDPWMWLFETVGKSNV-PICNYSGGTEISGGI 424
Query: 515 XXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL--N 572
L++ + +F+ G +L + G PI V GEL L G + + +
Sbjct: 425 FGNVLIKPIAPISFNASLPGMAAVVLDDQGNPIRDEV---GELCLEKPWVGMTKSFWEDD 481
Query: 573 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632
+ + Y+S N + HGD + G Y GR+DDT+N+ G ++ E E I
Sbjct: 482 ERYVNTYWSRF--ENKWV---HGD-WVVYDGEQYIITGRSDDTLNIAGKRIGPAEYESIL 535
Query: 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSF-NSAVQKKLNPL 691
++V+E AAIGVP G E VV +D+ +L + MS NS + K L P
Sbjct: 536 -VKHNDVIEAAAIGVPDDVKG-EVCHCFVVLRDNVTFTGELKKELMSLVNSHIGKALCP- 592
Query: 692 FKVSHVVPLPSLPRTATNKVMRRVLR 717
K HVV LP+T +KVMRRV++
Sbjct: 593 -KDIHVVE--DLPKTRNSKVMRRVIK 615
|
|
| UNIPROTKB|P27550 acs [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.5e-40, P = 1.5e-40
Identities = 162/570 (28%), Positives = 257/570 (45%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + + + D I W EGD K ++ KEL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIW--EGDDASQSKHISYKELHRDVCRFANTLL 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
LG+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T
Sbjct: 126 ELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVIT 185
Query: 289 QDLIIRGDKSIPLYSRVIDA-QAP----LAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 342
D +R +SIPL V DA + P + V+ K + + ++G D+ W D +E+
Sbjct: 186 SDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDLVEQAS 245
Query: 343 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIV 401
+ E E P+ F IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 246 DQHQAEEMNAEDPL--F--ILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIY 301
Query: 402 AWPT-NLGWMMG-PWLVYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSI 456
W T ++GW+ G +L+Y L GA+ ++ G P + A+ V +V +L P+
Sbjct: 302 -WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTA 360
Query: 457 VRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCXXXXXXX 512
+R + I+G D SS+R GS GE N + + W + + PV++
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVD-TWWQTETG 419
Query: 513 XXXXXSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 570
L A L A S P G + ++ N+G P+ G L ++ G + TL
Sbjct: 420 GFMITPLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATEG--SLVITDSWPGQARTL 477
Query: 571 LNANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEI 628
+ YFS +N + GD R GYY GR DD +N+ G ++ + EI
Sbjct: 478 FGDHERFEQTYFSTF--KN---MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532
Query: 629 ERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKL 688
E A + E A +G+P G V + +P +L + V+K++
Sbjct: 533 ESALVA-HPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEI 587
Query: 689 NPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
PL + SLP+T + K+MRR+LRK
Sbjct: 588 GPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
|
|
| ZFIN|ZDB-GENE-050320-139 acss1 "acyl-CoA synthetase short-chain family member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 166/631 (26%), Positives = 285/631 (45%)
Query: 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVN 177
++++ E SV +PE +W ++ E +++ P + + +S+ W G +N
Sbjct: 61 NYADLYELSVKDPENFWGSIAKER-LAWTKPFDQV------SDCDISSGKINWFLGGQLN 113
Query: 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSA 237
+ NCL V+ + + W ++ + G + +T +EL +A L + G+ +G
Sbjct: 114 VSVNCLDVHVANDPSRVALIW-EKDEPGTEER-ITYRELLEMTCRLANTLKSHGVQRGER 171
Query: 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDK 297
+AI MP++ +V LA G + + F+S ++ R++ ++ K + T + +RG +
Sbjct: 172 VAIYMPVSPMAVAAMLACARIGAVHTVVFAGFSSEALAGRIQDAQCKFVITCNQGVRGGR 231
Query: 298 SIPLYSRVIDA--QAP-LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQ 354
L S V A P + V AK ++ S+ + DI LE V + +E A
Sbjct: 232 VFDLKSTVDKAVKSCPSVRHVFVAKRTNNSVPMGKLDIP----LEEVMAGQSSECAPEPM 287
Query: 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWPTNLGWMMG- 412
E +L++SG+TG+PK I T A A+ ++ D D+ ++GW+ G
Sbjct: 288 ESEEMLFMLYTSGSTGKPKGIVHTQAGYLLYASLTHQYVFDYTPGDVFGCVADIGWITGH 347
Query: 413 PWLVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVTMLGVVPSIVRTWKS--TNCID 467
++VY L NGA+ L+ +P+ ++ VQ ++ P+ +R + +
Sbjct: 348 SYVVYGPLCNGATSVLFESTPVYPNPGRYWETVQRLRINQFYGAPTAIRLLLKYEESWVK 407
Query: 468 GYDWSSIRCFGSTGEASNVDEYLW---LMGRALYKPVIEYCXXXXXXXXXXXXSLLQ--A 522
YD SS++ S GE N + + W ++G P+++ + A
Sbjct: 408 KYDRSSLKTLASVGEPINHEAWDWFHNVVGDGRC-PLVDTWWQTETGGVCIAPLPAEPGA 466
Query: 523 QSLAAFST-PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH--YDVY 579
+ A + P G K +LG G I N G L +S G + T+ + D Y
Sbjct: 467 EIRPAMAMRPFFGIKPELLGEKGQIITGNDVN-GALCISQPWPGMARTIFGDHQRFVDAY 525
Query: 580 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN- 638
F P + GQ GD RT GYY+ GR DD +N+ G ++ + EIE +A+D +
Sbjct: 526 FK--PYQ-GQYFT--GDGAYRTEDGYYQITGRMDDVINISGHRLGTAEIE---DALDEHP 577
Query: 639 -VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPD--LNQLRMSFNSAVQKKLNPLFKVS 695
V ETA IG+P G VV+ K+S +N+LR S + K P
Sbjct: 578 DVPETAVIGIPHEIKGEVPFAFVVL-KESAAENQQAVVNELRHLVASKIAKYAVP----D 632
Query: 696 HVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 726
H + + LP+T + K+MRR+LRK Q N
Sbjct: 633 HFLVVKRLPKTRSGKIMRRILRKVAVQDTSN 663
|
|
| UNIPROTKB|Q9KV59 acsA "Acetyl-coenzyme A synthetase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 9.0e-36, P = 9.0e-36
Identities = 156/580 (26%), Positives = 252/580 (43%)
Query: 162 HLS-NPGG---QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELR 217
H S +PG +W +N + NC+ + D + I W EGD K++T K+L
Sbjct: 57 HTSFDPGHIDIRWFEDGTLNVSANCIDRHLATRGDQVAIIW--EGDDPTQDKTLTYKQLH 114
Query: 218 AEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277
EV A AL G+ KG + I MPM + V LA G + + F+ ++ R
Sbjct: 115 QEVCRFANALKEQGVRKGDVVCIYMPMVPEAAVAMLACTRIGAVHTIVFGGFSPEALAGR 174
Query: 278 LRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD- 336
+ S AK + T D +RG +++PL V +A + +K +K G+++W +
Sbjct: 175 IIDSNAKLVITADEGVRGGRAVPLKKNVDEALCNPEVKNISK--VMVLKRTGGNVAWHEH 232
Query: 337 ----FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH 392
+ E K +N E E IL++SG+TG+PK + T A + +
Sbjct: 233 RDIWWHEATAKASDN-CPPEEMKAEDPLFILYTSGSTGKPKGVLHTTGGYLVYATMTFKY 291
Query: 393 MDIRKADIVAWPT-NLGWMMG-PWLVYASLLNGASIALYNGSP---LGSGFAKFVQDAKV 447
+ + + V W T ++GW+ G +LVY L NGA L+ G P + ++ V KV
Sbjct: 292 VFDYQPNEVFWCTADVGWITGHSYLVYGPLANGAKTILFEGVPNYPTTARMSEVVDKHKV 351
Query: 448 TMLGVVPSIVRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL---YKPVI 502
+L P+ +R K I G S+R GS GE N + + W R + P++
Sbjct: 352 NILYTAPTAIRALMAKGDEAIKGTSRDSLRIMGSVGEPINPEAWEWYY-RTIGNEKSPIV 410
Query: 503 EYCXXXXXXXXXXXXSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALS 560
+ L A +L S P G + ++ N G I + G L L
Sbjct: 411 D-TWWQTETGGILITPLPGATALKPGSATRPFFGVQPALVDNMG-EIVEGATE-GNLVLL 467
Query: 561 PLIFGASSTLL-NANHYD-VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNL 618
G T+ + + ++ YFS G GD R GYY GR DD +N+
Sbjct: 468 DSWPGQMRTVYGDHDRFEQTYFSTF---KGMYFT--GDGARRDEDGYYWITGRVDDVLNV 522
Query: 619 GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRM 678
G ++ + EIE A + + E A +GVP G + + + D Y +L++
Sbjct: 523 SGHRMGTAEIESALVAFNK-IAEAAVVGVPHDIKG-QAIYAYITLNDGVYPSAELHK--- 577
Query: 679 SFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
V+K++ + + +LP+T + K+MRR+LRK
Sbjct: 578 EVKDWVRKEIGAIATPDVLHWTDALPKTRSGKIMRRILRK 617
|
|
| TIGR_CMR|VC_0298 VC_0298 "acetyl-CoA synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 9.0e-36, P = 9.0e-36
Identities = 156/580 (26%), Positives = 252/580 (43%)
Query: 162 HLS-NPGG---QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELR 217
H S +PG +W +N + NC+ + D + I W EGD K++T K+L
Sbjct: 57 HTSFDPGHIDIRWFEDGTLNVSANCIDRHLATRGDQVAIIW--EGDDPTQDKTLTYKQLH 114
Query: 218 AEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277
EV A AL G+ KG + I MPM + V LA G + + F+ ++ R
Sbjct: 115 QEVCRFANALKEQGVRKGDVVCIYMPMVPEAAVAMLACTRIGAVHTIVFGGFSPEALAGR 174
Query: 278 LRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD- 336
+ S AK + T D +RG +++PL V +A + +K +K G+++W +
Sbjct: 175 IIDSNAKLVITADEGVRGGRAVPLKKNVDEALCNPEVKNISK--VMVLKRTGGNVAWHEH 232
Query: 337 ----FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH 392
+ E K +N E E IL++SG+TG+PK + T A + +
Sbjct: 233 RDIWWHEATAKASDN-CPPEEMKAEDPLFILYTSGSTGKPKGVLHTTGGYLVYATMTFKY 291
Query: 393 MDIRKADIVAWPT-NLGWMMG-PWLVYASLLNGASIALYNGSP---LGSGFAKFVQDAKV 447
+ + + V W T ++GW+ G +LVY L NGA L+ G P + ++ V KV
Sbjct: 292 VFDYQPNEVFWCTADVGWITGHSYLVYGPLANGAKTILFEGVPNYPTTARMSEVVDKHKV 351
Query: 448 TMLGVVPSIVRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL---YKPVI 502
+L P+ +R K I G S+R GS GE N + + W R + P++
Sbjct: 352 NILYTAPTAIRALMAKGDEAIKGTSRDSLRIMGSVGEPINPEAWEWYY-RTIGNEKSPIV 410
Query: 503 EYCXXXXXXXXXXXXSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALS 560
+ L A +L S P G + ++ N G I + G L L
Sbjct: 411 D-TWWQTETGGILITPLPGATALKPGSATRPFFGVQPALVDNMG-EIVEGATE-GNLVLL 467
Query: 561 PLIFGASSTLL-NANHYD-VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNL 618
G T+ + + ++ YFS G GD R GYY GR DD +N+
Sbjct: 468 DSWPGQMRTVYGDHDRFEQTYFSTF---KGMYFT--GDGARRDEDGYYWITGRVDDVLNV 522
Query: 619 GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRM 678
G ++ + EIE A + + E A +GVP G + + + D Y +L++
Sbjct: 523 SGHRMGTAEIESALVAFNK-IAEAAVVGVPHDIKG-QAIYAYITLNDGVYPSAELHK--- 577
Query: 679 SFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
V+K++ + + +LP+T + K+MRR+LRK
Sbjct: 578 EVKDWVRKEIGAIATPDVLHWTDALPKTRSGKIMRRILRK 617
|
|
| TIGR_CMR|SO_2743 SO_2743 "acetyl-coenzyme A synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 2.0e-35, P = 2.0e-35
Identities = 161/619 (26%), Positives = 266/619 (42%)
Query: 122 FQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKN 181
+QE S+ NPE +W+ + + P +++ +++LS W +N + N
Sbjct: 28 YQE-SIVNPEGFWREHGKRIDW---IKPYTKIKKTTFDDHNLSI---NWFYDGTLNASAN 80
Query: 182 CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAID 241
CL + D + I W EGD + +T EL +V A AL + G+ +G + I
Sbjct: 81 CLDRHLAAHSDRVAIIW--EGDNANEQRKITYGELHTQVCKFANALRSQGVRRGDIVTIY 138
Query: 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPL 301
MPM + V LA G + + F+ I++R+ K+K + T D +RG ++IPL
Sbjct: 139 MPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKIVITSDEGMRGGRAIPL 198
Query: 302 YSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERV-RKLKE--NEFAAVEQP-VE 357
+ DA + K +K G I W++ + L E +E AVE+ E
Sbjct: 199 KRNIDDALKHPDVTSVEK--VIVLKRTGGKIDWVEGRDVWWHSLVETASEHCAVEEMGAE 256
Query: 358 AFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPT-NLGWMMG-PWL 415
+L++SG+TG PK + T A+ ++ K + W T ++GW+ G ++
Sbjct: 257 DPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKPGEIYWCTADVGWITGHSYM 316
Query: 416 VYASLLNGASIALYNG---SPLGSGFAKFVQDAKVTMLGVVPSIVRTW--KSTNCIDGYD 470
VY L NGA++ ++ G P + + + KV +L P+++R + D Y+
Sbjct: 317 VYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGKQHFDKYN 376
Query: 471 WSSIRCFGSTGEASNVDEYLWLMGRALYKPVI--EYCXXXXXXXXXXXXSLLQAQSLAAF 528
SS+R GS GE N + + W Y VI E+C +L A
Sbjct: 377 GSSLRIMGSVGEPINPEAWRW------YHEVIGHEHCPIVDTWWQTETGGILITPLPGAT 430
Query: 529 ST-------PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFS 581
T P G + ++ N G I + G L L G T+ +H +
Sbjct: 431 DTKPGSATRPFFGVQPALVDNMG-NILEGATE-GNLVLLDSWPGQMRTVYG-DHERFVLT 487
Query: 582 GMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--V 639
+ G GD R GYY GR DD +N+ G ++ + E+E +A+ S+ V
Sbjct: 488 YFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVE---SALVSHELV 542
Query: 640 LETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVP 699
E A +G P G V + + + + +LR V+K++ L +
Sbjct: 543 AEAAVVGYPHDIKGQGIYAYVTLTRGTE----ESEELRQELRQWVRKEIGALATPDLIQW 598
Query: 700 LPSLPRTATNKVMRRVLRK 718
LP+T + K+MRR LRK
Sbjct: 599 ATGLPKTRSGKIMRRFLRK 617
|
|
| TIGR_CMR|CPS_3955 CPS_3955 "acetyl-CoA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 5.8e-35, P = 5.8e-35
Identities = 162/587 (27%), Positives = 248/587 (42%)
Query: 163 LSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWL 222
L N W G +N + NC+ + +D I + EGD +T +EL V
Sbjct: 62 LKNSEINWFSGGKLNVSYNCIDRHLATKANDTAIIF--EGDDPNDDSKVTYQELHDHVCR 119
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISK 282
A L G+ KG + I MPM LA G I + F++ I AR+ +
Sbjct: 120 FANLLKERGVKKGDRVCIYMPMIPEVGYAMLACARIGAIHSVVFGGFSTESIKARVLDAD 179
Query: 283 AKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD-----F 337
K + T D +RG K IPL S V DA I P S + GD++W D +
Sbjct: 180 CKVVITADQSLRGGKRIPLKSNV-DAAV---IDCPNVHSVIVVARTGGDVAWNDKVDINY 235
Query: 338 LERVRK---LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD 394
E V K + E E E P+ F +L++SG+TG PK + T AA ++
Sbjct: 236 EEAVAKQSAICEPEVMDAEDPL--F--VLYTSGSTGTPKGVVHTCGGYILYAAMTHKYVF 291
Query: 395 IRKADIVAWPT-NLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKFVQDA---KVTM 449
K V W T + GW+ G ++ Y L NGA+ ++ G P +F Q KV +
Sbjct: 292 DYKEGEVYWCTADAGWITGHSYIFYGPLANGATTLVFEGVPTYPDAGRFWQVCEKHKVNV 351
Query: 450 LGVVPSIVRTWKST--NCIDGYDWSSIRCFGSTGEASNVDEYLW---LMGRALYKPVIEY 504
P+ +R S + ++ D SS+R G+ GE N + + W ++G++ P+++
Sbjct: 352 FYTAPTAIRALMSIGDDLVNQADLSSLRLLGTVGEPINPEAWHWYYEVVGKSNC-PIVD- 409
Query: 505 CXXXXXXXXXXXXSLLQAQSL--AAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPL 562
SL A + P G + + DG + G+ L ++
Sbjct: 410 TWWQTETGGILITSLPGAVDMKPGCAGKPFFGVQPALFDKDGNTLEGENAGL--LVMTAS 467
Query: 563 IFGASSTLLNANH--YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGG 620
G T+ ++ Y Y P G GD +R GYY GR DD +N+ G
Sbjct: 468 WPGQLRTVYGDHNRFYQTYLGQYP---GNYFT--GDGAKRDEDGYYWITGRVDDVLNVSG 522
Query: 621 IKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSF 680
++ + EIE + V E A +G P G V + N T D +L +
Sbjct: 523 HRLGTAEIESAL-VLHPAVAEAAVVGYPHEIKGQGVYCYVTLM--GNATESD--ELNVEL 577
Query: 681 NSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQNS 727
V K+L K ++ P LP+T + K+MRR+LRK +A+ D +S
Sbjct: 578 REFVAKELGRFAKPDYIQWSPGLPKTRSGKIMRRILRK-IAENDVDS 623
|
|
| FB|FBgn0012034 AcCoAS "Acetyl Coenzyme A synthase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 7.0e-35, P = 7.0e-35
Identities = 176/651 (27%), Positives = 274/651 (42%)
Query: 116 ISSFSNFQEF---SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPN-GENHLSNPGGQWL 171
ISSF +Q+F S+ NP +W V + L+ N N + +S +W+
Sbjct: 20 ISSFEEYQKFYQESLDNPAEFWSRVAKQFHWETPADQDKFLKYNFNISKGPISI---KWM 76
Query: 172 PGAFVNPAKNCLSVNSKRSL-DDIVIRWCDEGDGGLPV-KSMTLKELRAEVWLVAYALNA 229
GA N N L N + L D I W EG+ + +T ++L EV A L
Sbjct: 77 EGASTNLCYNLLDRNVRNGLGDQIAYYW--EGNHPDDYSRGLTYRKLLEEVCRFANVLKD 134
Query: 230 LGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQ 289
G+ KG ++I MPM + + LA G + + F+ ++ R+ KAK + T
Sbjct: 135 HGIRKGDRVSIYMPMILELPIAMLACARIGAVHSIVFAGFSPDSLAERMFDCKAKLLITA 194
Query: 290 DLIIRGDKSIPLYSRVIDAQAPL---------AIVI-------PAKGSSFSMKLR---DG 330
D RG+K + L + A + IV+ P + ++ D
Sbjct: 195 DGAWRGEKPLYLKALCDTALEKVEEMGHSVEKCIVVSHLKRVTPCQPDHVEEEIPWTDDR 254
Query: 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW 390
D W + +E E+ E P+ F +L++SG+TG+PK + T A AA +
Sbjct: 255 DYWWHEEMEDKEPACYPEWMDAEDPL--F--MLYTSGSTGKPKGVLHTTAGYLLYAATTF 310
Query: 391 -CHMDIRKADIVAWPT-NLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKF---VQD 444
D + DI W T ++GW+ G ++VY L NGA+ ++ G+P G ++ +
Sbjct: 311 KIVFDYKPGDIY-WCTADVGWITGHTYVVYGPLANGATSVIFEGTPFFPGNDRYWSVIDK 369
Query: 445 AKVTMLGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWL---MGRALYK 499
KVT P+ +R + ++ S ++ GS GE N + +LW +G+
Sbjct: 370 YKVTQFYTAPTAIRALMKFGEGPVLKHNLSGLKVLGSVGEPINPEAWLWYYKYIGKEQCS 429
Query: 500 PVIEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL 559
V + + S P G K +L D C I G G L
Sbjct: 430 IVDTFWQTETGGHVITPLPGATPMKPGSASFPFFGVKPTLL--DECGIEIKGEGEGYLVF 487
Query: 560 SPLIFGASSTLLNANHY---DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTM 616
S G TL N NH D YFS P G GD R + GY GR DD +
Sbjct: 488 SQPWPGMMRTLYN-NHERFEDTYFSKFP---GYYCT--GDGARRDADGYLWITGRVDDML 541
Query: 617 NLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQL 676
N+ G +S+ E+E + V E+A + P P G E L + ++ +L
Sbjct: 542 NVSGHLMSTAEVESVLTE-HPRVAESAVVSRPHPVKG-ECLYCFITPNENEVFD---QKL 596
Query: 677 RMSFNSAVQKKLNPLFKVSHVVP-LPSLPRTATNKVMRRVLRKQLAQLDQN 726
V++++ P F + V+ P LP+T + K+MRRVLRK +A D+N
Sbjct: 597 ISDLKKMVRERIGP-FAMPDVIQNAPGLPKTRSGKIMRRVLRK-IAVNDRN 645
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F4KBF3 | AAE17_ARATH | 6, ., 2, ., 1, ., - | 0.72 | 0.9849 | 0.9958 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.691 |
| 4th Layer | 6.2.1.16 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 729 | |||
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.0 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 0.0 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-102 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-89 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 1e-54 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 2e-51 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-50 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 3e-50 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 7e-48 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 3e-46 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 8e-44 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 8e-43 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 3e-39 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 1e-36 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 7e-35 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 1e-33 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 1e-28 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 6e-27 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 3e-26 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-23 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 4e-23 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-22 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 3e-22 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 7e-22 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 1e-21 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 1e-21 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-21 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 4e-20 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 7e-20 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 1e-19 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 4e-19 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 2e-18 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 8e-18 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 2e-17 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 7e-17 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 1e-15 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 2e-15 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 6e-15 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 8e-15 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 3e-14 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 3e-14 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-14 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 6e-13 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-12 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 4e-12 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 4e-12 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 7e-12 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 1e-11 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 3e-11 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 4e-11 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 4e-11 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 4e-11 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 5e-11 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 8e-11 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 1e-10 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-10 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 3e-10 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 6e-10 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 1e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-09 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 5e-09 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 1e-08 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-08 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 2e-08 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 2e-08 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-08 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 4e-08 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 6e-08 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 7e-08 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 8e-08 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 1e-07 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 2e-07 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 2e-07 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 3e-07 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 4e-07 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 7e-07 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 9e-07 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-06 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 2e-06 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 2e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 4e-06 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 4e-06 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 4e-06 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 5e-06 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 6e-06 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 7e-06 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 8e-06 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 8e-06 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 9e-06 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 9e-06 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 9e-06 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 9e-06 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-05 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-05 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 2e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-05 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 3e-05 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 3e-05 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 3e-05 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 4e-05 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 4e-05 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 5e-05 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 6e-05 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-04 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 1e-04 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 1e-04 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 1e-04 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 1e-04 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-04 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 1e-04 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 1e-04 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 1e-04 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-04 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 2e-04 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 2e-04 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 3e-04 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 3e-04 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 4e-04 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 4e-04 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 5e-04 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 5e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 7e-04 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 0.001 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 0.001 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 0.001 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 0.001 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 0.001 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 0.002 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 0.002 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.002 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 0.003 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 0.004 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 1358 bits (3518), Expect = 0.0
Identities = 505/729 (69%), Positives = 589/729 (80%), Gaps = 10/729 (1%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSF 65
K++D IT D+EA G+ + AE+ ++L I+ GA+ P+ W+ I+ +L+P PF+
Sbjct: 5 GKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRAGASPPSIWRRISQSLLTPSHPFAL 64
Query: 66 HQLLYYGCYKDFGPD----PPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSN 121
HQL+YY CYK++ D PPAW P PE AK+TN+G+LL+ RG+E LGS YKDPISSFS
Sbjct: 65 HQLMYYSCYKNWDSDTLGPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSE 124
Query: 122 FQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKN 181
FQ FSV NPEVYW VL+E+S FSVPP+CIL + SNPGGQWLPGA +N A+
Sbjct: 125 FQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSD-----ESNPGGQWLPGAVLNVAEC 179
Query: 182 CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAID 241
CL+ ++ D I I W DEG LPV MTL ELR++V VA AL+ALG +KG AIAID
Sbjct: 180 CLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239
Query: 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPL 301
MPMNV++V+IYLAI+LAG +VVSIADSFA EI+ RL+ISKAKAIFTQD+I+RG KSIPL
Sbjct: 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPL 299
Query: 302 YSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKL-KENEFAAVEQPVEAFT 360
YSRV++A+AP AIV+PA G S +KLR+GD+SW DFL R L + +E+ AVEQPVEAFT
Sbjct: 300 YSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFT 359
Query: 361 NILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 420
NILFSSGTTGEPKAIPWT TP +AAADAW H+DIRK DIV WPTNLGWMMGPWLVYASL
Sbjct: 360 NILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASL 419
Query: 421 LNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGST 480
LNGA++ALYNGSPLG GFAKFVQDAKVTMLG VPSIV+TWK+TNC+ G DWSSIRCFGST
Sbjct: 420 LNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479
Query: 481 GEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFIL 540
GEAS+VD+YLWLM RA YKP+IEYCGGTE+GGGF+TGSLLQ Q+ AAFSTPAMGCKLFIL
Sbjct: 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFIL 539
Query: 541 GNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFER 600
+ G P P + P GELAL PL+FGASSTLLNA+HY VYF GMP NG+ILRRHGD+FER
Sbjct: 540 DDSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFER 599
Query: 601 TSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIV 660
TSGGYYRAHGRADDTMNLGGIKVSSVEIER+CNA D +VLETAAIGVPPP GGPEQL I
Sbjct: 600 TSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIA 659
Query: 661 VVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 720
V KD + PDLN+L+ FNSA+QKKLNPLFKVS VV +PS PRTA+NKVMRRVLR+QL
Sbjct: 660 AVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQL 719
Query: 721 AQLDQNSKL 729
AQ SKL
Sbjct: 720 AQELSRSKL 728
|
Length = 728 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 681 bits (1758), Expect = 0.0
Identities = 277/499 (55%), Positives = 357/499 (71%), Gaps = 11/499 (2%)
Query: 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPL 301
MPM V++V+IYLAIVLAG +VVS+ADSF++ EI+ RL IS AK +FTQD+++RG +++PL
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60
Query: 302 YSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKL---KENEFAAVEQPVEA 358
YS+V++A AIV+PA G ++ LR+ D+SW DFL NE++ V PVE+
Sbjct: 61 YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVES 120
Query: 359 FTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418
TNILFSSGTTGEPKAIPWT+ +P + A+D W HMDI+ D+V WPTNLGWMMGPWL+Y+
Sbjct: 121 VTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYS 180
Query: 419 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRC 476
+ LNGA++ALY G+PLG GF KFVQDA VT+LG+VPSIV+ W+ T ++G DWS +R
Sbjct: 181 AFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240
Query: 477 FGSTGEASNVDEYLWLM-GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGC 535
F STGEAS VD+ LWL R YKPVIEYCGGTE+ G+I+ +LLQ Q+ AFST ++G
Sbjct: 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGT 300
Query: 536 KLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP--SRNGQILRR 593
+ +L ++G P P + P +GE+AL+P + GAS LLNA+H VY+ GMP G LRR
Sbjct: 301 RFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRR 360
Query: 594 HGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 653
HGD+ +RT GGY+ GRADDTMNLGGIK SSVEIER C+ + + ETAA+GV PPDGG
Sbjct: 361 HGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGG 420
Query: 654 PEQLTIVVVFKDSNYTPP--DLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKV 711
PE L I +V + L+ F A+Q LNPLFKVS V +P LPR A+NK+
Sbjct: 421 PELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKL 480
Query: 712 MRRVLRKQLAQLDQ-NSKL 729
+RRVLR QL + SKL
Sbjct: 481 LRRVLRDQLKKELSGRSKL 499
|
Length = 499 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 321 bits (825), Expect = e-102
Identities = 168/523 (32%), Positives = 240/523 (45%), Gaps = 83/523 (15%)
Query: 208 VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIAD 267
V++ T EL EV +A L ALGL KG + I MPM +VV LAI G I V I
Sbjct: 5 VRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFS 64
Query: 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKL 327
F ++ RL+ ++AK + T D +R +G +K
Sbjct: 65 GFGPDAVATRLQDAEAKVLITADGFLR------------------------RGKRVDLK- 99
Query: 328 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNA-TPFKAA 386
+ P I+++SGTTG+PK T+A P KAA
Sbjct: 100 -------------------------DDPAM----IIYTSGTTGKPKGTVHTHAGFPVKAA 130
Query: 387 ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSG---FAKFVQ 443
D D++ D + W T++GWMMGPWLV LL GA+I LY G+P + V+
Sbjct: 131 KDIGFCFDLKPGDRLLWITDMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDRLWRIVE 190
Query: 444 DAKVTMLGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWLM-----GRA 496
KVT LG+ P+++R ++ ++G+D SS+R GSTGE + + +LWL GRA
Sbjct: 191 RHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRA 250
Query: 497 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 556
P+I Y GGTEI GG + ++ +F+ P+ G ++ DG P+ +GE
Sbjct: 251 ---PIINYSGGTEISGGILGNVPIRPIKPCSFNGPSPGMDADVVDEDGRPVR---GEVGE 304
Query: 557 LALSPLIFGASSTLLNAN--HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADD 614
L + G + + + Y+S P + HGD GY+ GR+DD
Sbjct: 305 LVVRAPWPGMTRGFWRDPERYLETYWSRFPG-----VWVHGDWALVDEDGYWYILGRSDD 359
Query: 615 TMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLN 674
T+ + G +V EIE + N+ V E AAIGVP P G E + VV K TP
Sbjct: 360 TIKVAGKRVGPAEIESVLNSHP-AVAEAAAIGVPDPVKG-EAIVCFVVLKP-GVTPSAA- 415
Query: 675 QLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717
L V L F+ V + LP+T K+MRRV+R
Sbjct: 416 -LEAELADHVGDALGKPFRPREVHFVSDLPKTRNGKIMRRVIR 457
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 290 bits (745), Expect = 1e-89
Identities = 155/563 (27%), Positives = 248/563 (44%), Gaps = 52/563 (9%)
Query: 169 QWLPGAFVNPAKNCLSVNSKR-SLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYAL 227
+W G +N A N L + + DD I + E + +T +LR EV +A AL
Sbjct: 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFDGEDGLF---RELTYGDLRREVARLANAL 57
Query: 228 NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIF 287
LG KG +AI MP + +V+ LA G I ++ ++ ++ R+ K +
Sbjct: 58 KDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLI 117
Query: 288 TQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKEN 347
D R K I L + + +V + + + +E+ +
Sbjct: 118 ADDGTFRNGKEIALLEDADAVLSSVVVV------------PRLGLWYDEAVEKASE---- 161
Query: 348 EFAAVEQPVE--AFTNILFSSGTTGEPKAIPWTNA-TPFKAAADAWCHMDIRKADIVAWP 404
+F P + F +L++SGTTG+PK I ++ + A H D+ D
Sbjct: 162 KFEFEPLPADDPLF--LLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNS 219
Query: 405 TNLGWMMGPW-LVYASLLNGASIALYNGSPLGSG--FAKFVQDAKVTMLGVVPSIVRTWK 461
++ GW+ G W V++ L +GA+ LY+G P S + ++ KVT+ G P+ +R
Sbjct: 220 SDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLM 279
Query: 462 STNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL-L 520
+ YD SS+R GS GE N + + W AL +++ G TE G GFI G +
Sbjct: 280 KLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFY-SALGVWILDIYGQTETGMGFIAGRPPV 338
Query: 521 QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN--HYDV 578
+ S P G + + ++G P+P PG+GEL + G + T N + +
Sbjct: 339 KNGSSG---LPLPGYAVRRVDDEGNPVP---PGVGELVVRLPWPGMALTYWNDPERYKEA 392
Query: 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN 638
YF R GD ER GY+ HGR+DD + + G ++ +EIE + A
Sbjct: 393 YFGRW--------YRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHP-A 443
Query: 639 VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVV 698
V E A +GVP P G + + VV P N+L V + + P +
Sbjct: 444 VAEAAVVGVPDPGKG-QIVLAFVVLAA-GVEP---NELAEEIRRHVARNIGPHAIPRKIR 498
Query: 699 PLPSLPRTATNKVMRRVLRKQLA 721
+ LP+TA+ K+ RR+LRK L
Sbjct: 499 FVDELPKTASGKIQRRLLRKILH 521
|
Length = 528 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 1e-54
Identities = 153/628 (24%), Positives = 254/628 (40%), Gaps = 73/628 (11%)
Query: 115 PISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGA 174
++ + +SV + +W++V + S +L + PG +W PGA
Sbjct: 4 SLADYHALWRWSVEDLAAFWESVWDFFDVIGSKGYVVVLDGDIM-------PGARWFPGA 56
Query: 175 FVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDK 234
+N A+N L D I E DG + ++ ELR++V +A AL LG+
Sbjct: 57 RLNYAENLLR---HADNDPAAIYAAGE-DG--ERREISWAELRSQVARLAAALRDLGVKP 110
Query: 235 GSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIR 294
G +A +P +V+ LA G I S + F + R + K +F D +
Sbjct: 111 GDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVY 170
Query: 295 GDKSIPLYSRVIDAQAPLA-----IVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEF 349
K ++ + L +V+P S L + + EF
Sbjct: 171 NGKEHDRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEF 230
Query: 350 AAVEQPVEAFTNILFSSGTTGEPKAIPWTNA-TPFKAAADAWCHMDIRKADIVAWPTNLG 408
+ + IL+SSGTTG PK I T + + H D+R D + + T G
Sbjct: 231 ERLPFDHPLW--ILYSSGTTGLPKCIVHGAGGTLLQHLKEHGLHCDLRPGDRLFYYTTTG 288
Query: 409 WMMGPWLVYASLLNGASIALYNGSPLGSGFA---KFVQDAKVTMLGVVPSIVRTWKSTNC 465
WMM WLV + LL+GA++ LY+GSPL + +T+ G + +
Sbjct: 289 WMMWNWLV-SGLLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAG- 346
Query: 466 ID---GYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV--------IEYCGGTEIGGGF 514
I+ +D SS+R STG + + W+ Y V I GGT+I G F
Sbjct: 347 IEPGRTHDLSSLRTILSTGSPLPPEGFDWV-----YSHVKSDVWLASIS--GGTDICGCF 399
Query: 515 ITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS------PLIFGASS 568
+ G+ +G + +G P+ V GEL + PL F
Sbjct: 400 VGGNPTLPVYRGEIQCRGLGMAVEAFDEEGKPVIGEV---GELVCTKPFPSMPLYF---- 452
Query: 569 TLLN----ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVS 624
N + + D YF P + RHGD + T G +GR+D T+N GG+++
Sbjct: 453 --WNDPDGSRYRDAYFDTFPG-----VWRHGDWIKITPHGGVIIYGRSDATLNPGGVRIG 505
Query: 625 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAV 684
+ EI R+ + V ++ +G DG E++ + V ++ L + SA+
Sbjct: 506 TAEIYRVVEKIPE-VEDSLVVGQEVDDGD-ERMPLFVKLREGVTLDDALVK---RIRSAI 560
Query: 685 QKKLNPLFKVSHVVPLPSLPRTATNKVM 712
+ L+P + ++ +P +P T + K +
Sbjct: 561 RAALSPRHVPAEIIAVPDIPYTLSGKKV 588
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 2e-51
Identities = 182/689 (26%), Positives = 280/689 (40%), Gaps = 117/689 (16%)
Query: 79 PDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVL 138
P W P E + + T +L + ++ +SV + E +W++V
Sbjct: 1 MGDPLWTPSAERIAASRM-----TAFIRWLAARRGLSFDDYAALWRWSVEDLEAFWQSVW 55
Query: 139 NEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRW 198
+ S P +L PG +W PGA +N A+N L R D I +
Sbjct: 56 DFFGVIGSTPYTVVLAGRRM-------PGARWFPGARLNYAENLLR---HRRDDRPAIIF 105
Query: 199 CDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258
E DG P + ++ ELR +V +A AL ALG+ G +A +P +VV LA
Sbjct: 106 RGE-DG--PRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASL 162
Query: 259 GYI---------VVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ 309
G I V + D F +E K + D G K+ ++V + +
Sbjct: 163 GAIWSSCSPDFGVQGVLDRFGQIE---------PKVLIAVDGYRYGGKAFDRRAKVAELR 213
Query: 310 APL-----AIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAV--EQPVEAFTNI 362
A L +V+P G + + G + W DFL E EF V + P+ I
Sbjct: 214 AALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEA-AELEFEPVPFDHPLW----I 268
Query: 363 LFSSGTTGEPKAI----PWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418
L+SSGTTG PK I K H D+ D W T GWMM WLV +
Sbjct: 269 LYSSGTTGLPKCIVHGHGGILLEHLKELG---LHCDLGPGDRFFWYTTCGWMMWNWLV-S 324
Query: 419 SLLNGASIALYNGSPL---GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-------IDG 468
LL GA++ LY+GSP + + VT+ G + C +
Sbjct: 325 GLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYL-----DACEKAGLVPGET 379
Query: 469 YDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIE------YCGGTEIGGGFITGSLLQA 522
+D S++R GSTG + + W+ Y+ V GGT+I F+ G+ L
Sbjct: 380 HDLSALRTIGSTGSPLPPEGFDWV-----YEHVKADVWLASISGGTDICSCFVGGNPLLP 434
Query: 523 QSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS------PLIFGASSTLLN---- 572
+G + DG P+ V +GEL + PL F N
Sbjct: 435 VYRGEIQCRGLGMAVEAWDEDGRPV---VGEVGELVCTKPFPSMPLGF------WNDPDG 485
Query: 573 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632
+ + D YF P + RHGD E T G +GR+D T+N GG+++ + EI R
Sbjct: 486 SRYRDAYFDTFPG-----VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQV 540
Query: 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLN-QLRMSFNSAVQKKLNPL 691
A+ VL++ IG PDG ++ + VV + L+ LR + ++ L+P
Sbjct: 541 EALPE-VLDSLVIGQEWPDGD-VRMPLFVVLAEG----VTLDDALRARIRTTIRTNLSPR 594
Query: 692 FKVSHVVPLPSLPRTATNKVM----RRVL 716
++ +P +PRT + K + +++L
Sbjct: 595 HVPDKIIAVPDIPRTLSGKKVELPVKKLL 623
|
Length = 655 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 1e-50
Identities = 124/536 (23%), Positives = 201/536 (37%), Gaps = 61/536 (11%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+T +EL +A AL ALG+ G +AI +P + ++ +LA + AG + V +
Sbjct: 37 GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPR 96
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
E++ L + AK + T + L V +A + +V+
Sbjct: 97 LTPRELAYILNDAGAKVLITS------AEFAALLEAVAEALPVVLVVLLVGD-------- 142
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD 388
D + + + A + +L++SGTTG PK + T+ AA
Sbjct: 143 ADDRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAG 202
Query: 389 --AWCHMDIRKADIVAWPT----NLGWMMGPWLVYASLLNGASIALYNGSPL-GSGFAKF 441
A + D+V G ++G L A LL G ++ L + P
Sbjct: 203 IAAALGGGLTPDDVVLSWLPLFHIFGLIVG-LL--APLLGGGTLVLLSPEPFDPEEVLWL 259
Query: 442 VQDAKVTMLGVVPSIVRTW-KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKP 500
++ KVT+L VP+ +R + D SS+R S G + R
Sbjct: 260 IEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIA 319
Query: 501 VIEYCGGTEIGGGFITGSLLQAQSLAAFST----PAMGCKLFILGNDGCPIPQNVPG-MG 555
++E G TE L A P G ++ I+ DG + +PG +G
Sbjct: 320 ILEGYGLTETSPVVTINPP---DDLLAKPGSVGRPLPGVEVRIVDPDGG---EVLPGEVG 373
Query: 556 ELAL-SPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRH-----GDVFERTSGGYYRAH 609
E+ + P + Y+ P + GD+ GY
Sbjct: 374 EIWVRGPNVMKG------------YW-NRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIV 420
Query: 610 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYT 669
GR D + GG + EIE + V E A +GVP G E++ VVV K
Sbjct: 421 GRLKDLIISGGENIYPEEIEAVLAEHP-AVAEAAVVGVPDERWG-ERVVAVVVLKPGGDA 478
Query: 670 PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 725
+LR + ++K+L VV + LPRTA+ K+ RR LR++ +
Sbjct: 479 ELTAEELR----AFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEPR 530
|
Length = 534 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 3e-50
Identities = 180/628 (28%), Positives = 287/628 (45%), Gaps = 74/628 (11%)
Query: 124 EFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCL 183
E S+ +P+ +W + E+ F P +L + P +W G +N + NC+
Sbjct: 12 EESIEDPDKFWAKLARELLDWFK-PFTKVL----DWSFP---PFYKWFVGGELNVSYNCV 63
Query: 184 SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMP 243
+ + D + I W EGD V+ +T +EL EV A L +LG+ KG +AI MP
Sbjct: 64 DRHLEARPDKVAIIW--EGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMP 121
Query: 244 MNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYS 303
M + + LA G I + F++ ++ R+ + AK + T D +RG K IPL +
Sbjct: 122 MIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKA 181
Query: 304 RVIDA--QAPLA----IVIPAKGSSFSMKLRDG-DISWLDFLERVRKLKENEFAAVEQPV 356
V +A + P++ +V+ G+ +G D+ W D + + E E E P+
Sbjct: 182 IVDEALEKCPVSVEHVLVVRRTGNPVPWV--EGRDVWWHDLMAKASAYCEPEPMDSEDPL 239
Query: 357 EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM------DIRKADIVAWPTNLGWM 410
F IL++SG+TG+PK + T + M DI+ DI ++GW+
Sbjct: 240 --F--ILYTSGSTGKPKGVLHTT-----GGYLLYAAMTMKYVFDIKDGDIFWCTADVGWI 290
Query: 411 MG-PWLVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVTMLGVVPSIVRTWK--STN 464
G ++VY L NGA+ ++ G+P +F ++ KVT+ P+ +R
Sbjct: 291 TGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDE 350
Query: 465 CIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK-------PVIEYCGGTEIGGGFITG 517
+ +D SS+R GS GE N + ++W YK P+++ TE GG IT
Sbjct: 351 WVKKHDLSSLRLLGSVGEPINPEAWMW-----YYKVVGKERCPIVDTWWQTETGGIMIT- 404
Query: 518 SLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 575
L A S P G + ++ +G P+ G G L + G T+ +H
Sbjct: 405 PLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEG-GYLVIKQPWPGMLRTIYG-DH 462
Query: 576 Y---DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632
D YFS P GD R GY GR DD +N+ G ++ + EIE
Sbjct: 463 ERFVDTYFSPFPG-----YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIE--- 514
Query: 633 NAVDSN--VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNP 690
+A+ S+ V E A +G+P G + + V KD Y P D +LR V+K++ P
Sbjct: 515 SALVSHPAVAEAAVVGIPDDIKG-QAIYAFVTLKDG-YEPDD--ELRKELRKHVRKEIGP 570
Query: 691 LFKVSHVVPLPSLPRTATNKVMRRVLRK 718
+ K + +P LP+T + K+MRR+LRK
Sbjct: 571 IAKPDKIRFVPGLPKTRSGKIMRRLLRK 598
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 7e-48
Identities = 105/432 (24%), Positives = 169/432 (39%), Gaps = 44/432 (10%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS 271
T +EL +A AL ALG+ G +AI +P + VV LA++ AG V + S +
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 272 LEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGD 331
++ L S+AK + T D L ++++ L +++ +
Sbjct: 61 ERLAYILEDSEAKVLITDD---------ELLPKLLEVLLKLLVLLALII----VGDDGEG 107
Query: 332 ISWLDFLERVRKLKENEFAAV--EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA 389
+ LD E V + A+ I+++SGTTG+PK + T+ AA
Sbjct: 108 LDLLDDELLAGASAEPPAPPVDPDDL--AY--IIYTSGTTGKPKGVMLTHRNLLALAAGL 163
Query: 390 WCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPL-GSGFAKFVQDAKVT 448
+ D V L + W ++ LL G ++ L L + ++ KVT
Sbjct: 164 AERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVT 223
Query: 449 MLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGT 508
+L VP+++R YD SS+R S GE + L R P++ G T
Sbjct: 224 VLYGVPTLLRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPT 283
Query: 509 EIGGGFITGSLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGA 566
E T +L + S P G ++ +L +G P+P GEL I G
Sbjct: 284 E-TTVVATANLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPGEV--GEL----CIRGP 336
Query: 567 SSTL-------LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLG 619
L A + +G + R GD+ GY GR DD + +
Sbjct: 337 GVARGYLNDPELTAERFV--------EDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR 388
Query: 620 GIKVSSVEIERI 631
G ++ EIE +
Sbjct: 389 GERIEPGEIEAV 400
|
Length = 412 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 3e-46
Identities = 186/661 (28%), Positives = 278/661 (42%), Gaps = 142/661 (21%)
Query: 124 EFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPG-GQWLPGAFVNPAKNC 182
+ S+ +PE +W E+ + P +L SNP +W G +N + NC
Sbjct: 2 KESIEDPEEFWAEQAEELD--WFKPWDKVL--------DWSNPPFAKWFVGGKLNASYNC 51
Query: 183 LSVNSKRSLDDIV-IRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAID 241
L + K + V I W EG+ G +++T +EL EV A L +LG+ KG +AI
Sbjct: 52 LDRHLKAGRGNKVAIIW--EGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIY 109
Query: 242 MPMNVNSVVIYLA---------IVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLI 292
MPM + LA +V AG+ ++AD R+ +K+K + T D
Sbjct: 110 MPMIPELPIAMLACARIGAIHSVVFAGFSAEALAD---------RINDAKSKLLITADGG 160
Query: 293 IRGDKSIPLYSRVIDA--QAPL---AIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKEN 347
RG K IPL V +A + P IV+ G M D+ W D + + E
Sbjct: 161 YRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEVPMV-EGRDVWWHDLMAKASPYCEP 219
Query: 348 EFAAVEQPVEAFTNILFSSGTTGEPKAIP--------WTNATPFKAAADA------WCHM 393
E E P+ F IL++SG+TG+PK + + T FK D WC
Sbjct: 220 EPMDAEDPL--F--ILYTSGSTGKPKGVVHTTGGYLVYAATT-FKYVFDIHPDDVYWC-- 272
Query: 394 DIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVTM 449
ADI GW+ G ++VY L NGA+ +Y G+P ++ V+ KVT+
Sbjct: 273 ---TADI-------GWITGHSYIVYGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKVTI 322
Query: 450 LGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK-------P 500
P+ +R +D SS+R GS GE N + ++W Y+ P
Sbjct: 323 FYTAPTAIRMLMRFGDEWPKKHDLSSLRLLGSVGEPINPEAWMW-----YYEVIGKERCP 377
Query: 501 VIEYCGGTEIGGGFIT----------GSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQN 550
+++ TE GG IT GS A P G + I+ +G +
Sbjct: 378 IVDTWWQTETGGHMITPLPGATPLKPGS-------ATR--PFPGVEPAIVDEEGNEVEGG 428
Query: 551 V----------PGMGELALSPLIFGASSTLLNANHY---DVYFSGMPSRNGQILRRHGDV 597
V PGM + I+G +H YFS P G GD
Sbjct: 429 VEGYLVIKRPWPGM---LRT--IYG--------DHERYVKTYFSKFP---GYYFT--GDG 470
Query: 598 FERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 657
R GYY GR DD +N+ G ++ + E+E + + V E A +G P G E +
Sbjct: 471 ARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPA-VAEAAVVGKPDEVKG-EAI 528
Query: 658 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717
V KD P D +LR V+K++ P+ ++ +P LP+T + K+MRR+LR
Sbjct: 529 YAFVTLKD-GVEPSD--ELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMRRILR 585
Query: 718 K 718
K
Sbjct: 586 K 586
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 8e-44
Identities = 166/660 (25%), Positives = 266/660 (40%), Gaps = 59/660 (8%)
Query: 82 PAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEM 141
P W PD + + + GE G+ + +SV + +WK V
Sbjct: 5 PLWQPDAQRIAQARMTRFQAWAGEHH-GAAEGG----YDALHRWSVDELDTFWKAVWEWF 59
Query: 142 STSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDE 201
FS P ++ + + PG QW PGA +N A+N L + + + + + DE
Sbjct: 60 DVRFSTPCARVVDDR-------TMPGAQWFPGARLNYAENLL----RAAGTEPALLYVDE 108
Query: 202 GDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYI 261
PV T ELR +V +A AL ALG+ G ++ +P +VV LA G I
Sbjct: 109 THEPAPV---TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAI 165
Query: 262 VVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL-----AIVI 316
S + F + + R + + K +FT D K +V + + L + I
Sbjct: 166 WSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHI 225
Query: 317 PAKGSSFSMKLR-DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAI 375
P G + + DG + DF + E F + P + ILFSSGTTG PK I
Sbjct: 226 PYLGPRETEAPKIDGALDLEDFTAAAQA-AELVFEQL--PFDHPLWILFSSGTTGLPKCI 282
Query: 376 PWT-NATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPL 434
+ T + + H D+ D + + T GWMM WLV + L GA++ LY+GSP
Sbjct: 283 VHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWNWLV-SGLATGATLVLYDGSPG 341
Query: 435 ---GSGFAKFVQDAKVTMLGVVP---SIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDE 488
+ + T+ G R + +D S+++C STG D
Sbjct: 342 FPATNVLWDIAERTGATLFGTSAKYVMACRK-AGVHPARTHDLSALQCVASTGSPLPPDG 400
Query: 489 YLWLMGRALYKPVI---EYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC 545
+ W+ K + GGT+I F + + P +G + +G
Sbjct: 401 FRWVYDE--IKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGK 458
Query: 546 PIPQNVPGMGELALSPLIFGASSTLLN----ANHYDVYFSGMPSRNGQILRRHGDVFERT 601
P+ V GEL + + N + + D YF P + RHGD T
Sbjct: 459 PVTGEV---GELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPG-----VWRHGDWITLT 510
Query: 602 SGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVV 661
G HGR+D T+N G+++ S EI +D V E+ IG PDGG + V
Sbjct: 511 PRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDE-VRESLCIGQEQPDGGYRVVLFVH 569
Query: 662 VFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721
+ + L++++ ++ L+P ++ +P +P T T K + +++ L
Sbjct: 570 LAPGATLDDALLDRIK----RTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQ 625
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 8e-43
Identities = 87/360 (24%), Positives = 151/360 (41%), Gaps = 35/360 (9%)
Query: 362 ILFSSGTTGEPKAIPWTN---ATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LVY 417
IL++SGTTG+PK + ++ +A A A + + D++ L ++G +
Sbjct: 5 ILYTSGTTGKPKGVVLSHRNLLANAQALAQAI---GLTEGDVLLSVLPLFHVVGGGSGLL 61
Query: 418 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 477
+LL G ++ LY G P F + ++ +VT+L VP++ GYD SS+R
Sbjct: 62 GALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLRLL 121
Query: 478 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKL 537
S GE + + P++E G TE T + + P G ++
Sbjct: 122 ISGGEPLSPELLERFE-ERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEV 180
Query: 538 FILGNDGCPIPQNVPG-MGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILR---- 592
++ +G P+P PG +GEL + Y++ P
Sbjct: 181 RVVDEEGKPLP---PGEVGELVVRG-----------PWVMKGYWNNPPETTAAATEDGWY 226
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
R GD+ GY GR+ D + +GG V E+E + + V E A +GVP D
Sbjct: 227 RTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPA-VAEAAVVGVPDEDR 285
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712
G E++ VV + +L+ + ++++L P + + LP+TA+ K+
Sbjct: 286 G-ERIVAFVVLRPG--ADALAEELK----AHLRERLAPYKVPRVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 3e-39
Identities = 165/637 (25%), Positives = 265/637 (41%), Gaps = 100/637 (15%)
Query: 129 NPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSK 188
PE +W N + + P + +L ++ + P +W G +N N +
Sbjct: 2 EPEAFWAEQANLID--WYKPWEKVL-------DNSNPPFTRWFVGGRLNLCYNAVD---- 48
Query: 189 RSLDDIVIRWCDEGDGGLP-----------VKSMTLKELRAEVWLVAYALNALGLDKGSA 237
R ++G G ++ T EL EV +A L LG+ KG
Sbjct: 49 --------RHIEDGRGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDR 100
Query: 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDK 297
+ I MPM +V+ LA G I + FAS E+++R+ +K K I T I +
Sbjct: 101 VIIYMPMIPEAVIAMLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGR 160
Query: 298 SIPLYSRVIDAQAPLAIVIPAK------GSSFSMKLRDGDISWLDFLERVRKLKENEFAA 351
+P Y ++D L+ P K G + D+ W + + + R
Sbjct: 161 VVP-YKPLLDKALELSQHKPHKVLILNRGQVPAPLKPGRDLDWAELMAKARP-------- 211
Query: 352 VE-QPVEAFTN---ILFSSGTTGEPKAIPWTNATPFKAAADAWCHM----DIRKADIVAW 403
V+ PVE+ T+ IL++SGTTG+PK + A A W M I+ D V W
Sbjct: 212 VDCVPVES-TDPLYILYTSGTTGKPKGVVRDTGG--YAVALKW-SMRNIYGIKPGD-VFW 266
Query: 404 PT-NLGWMMG-PWLVYASLLNGASIALYNGSPLG----SGFAKFVQDAKVTMLGVVPSIV 457
++GW++G ++VY LL+GA+ LY G P+G + + +++ V L P+ +
Sbjct: 267 AASDVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAI 326
Query: 458 RTWKSTN----CIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGG 513
R + + I YD SS+R GE + W+ + L PVI++ TE G
Sbjct: 327 RAIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLEWI-EKTLGVPVIDHWWQTETGWP 385
Query: 514 FITGSL-LQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 570
+ L+ + S P G + +L G + G + L PL G TL
Sbjct: 386 ITANCVGLELLPIKPGSPGKPVPGYDVQVLDETGEELGPGELGNIVIKL-PLPPGCLLTL 444
Query: 571 LNA---------NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGI 621
N + Y+ S G E GY GR DD +N+ G
Sbjct: 445 WGDDERFKKLYLNKFPGYYDTGDS---------GYKDED---GYLFVMGRTDDVINVAGH 492
Query: 622 KVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFN 681
++S+ E+E +V E A +GV G + +VV KD D +QL
Sbjct: 493 RLSTGEMEESVLK-HPDVAECAVVGVRDELKG-QVPLGLVVLKDD--CKIDADQLENEIV 548
Query: 682 SAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
+ V++++ P+ +VV + LP+T + K++RR LRK
Sbjct: 549 ALVREQIGPVAAFRNVVFVKRLPKTRSGKILRRTLRK 585
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-36
Identities = 185/661 (27%), Positives = 272/661 (41%), Gaps = 148/661 (22%)
Query: 126 SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSV 185
SV +PE +W + + P +L N P +W +N + NCL
Sbjct: 26 SVEDPEGFWAEQAKRLD--WFKPFDTVLDWNA--------PFIKWFEDGELNVSYNCLDR 75
Query: 186 NSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
+ K D + I W EGD + +T +EL EV A AL +LG+ KG +AI MPM
Sbjct: 76 HLKTRGDKVAIIW--EGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMI 133
Query: 246 VNSVVIYLA---------IVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGD 296
+ V LA +V G+ ++AD R+ + AK + T D +RG
Sbjct: 134 PEAAVAMLACARIGAVHSVVFGGFSAEALAD---------RIIDAGAKLVITADEGVRGG 184
Query: 297 KSIPLYSRVIDAQAPLA--------IVIPAKGSSFSMKLRDG-DISWLDFLERVRKLKEN 347
K IPL + V +A LA IV+ G +G D+ W + + E
Sbjct: 185 KPIPLKANVDEA---LANCPSVEKVIVVRRTGGDVDWV--EGRDLWWHELVAGASDECEP 239
Query: 348 EFAAVEQPVEAFTNILFSSGTTGEPKAI--------PWTNATPFKAAADA------WCHM 393
E E P+ F IL++SG+TG+PK + + T K D WC
Sbjct: 240 EPMDAEDPL--F--ILYTSGSTGKPKGVLHTTGGYLVYAAMT-MKYVFDYKDGDVYWC-- 292
Query: 394 DIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNG---SPLGSGFAKFVQDAKVTM 449
AD+ GW+ G ++VY L NGA+ ++ G P F + + KVT+
Sbjct: 293 ---TADV-------GWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTI 342
Query: 450 LGVVPSIVRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG 507
P+ +R + YD SS+R GS GE N + + W Y V+ GG
Sbjct: 343 FYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEW------YYKVV---GG 393
Query: 508 -----------TEIGGGFITGSLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNV--- 551
TE GG IT L A L S P G + ++ +G P+
Sbjct: 394 ERCPIVDTWWQTETGGIMIT-PLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGN 452
Query: 552 -------PGMGELALSPL--IFGASSTLLNANH---YDVYFSGMPSRNGQILRRHGDVFE 599
PGM + I+G +H YFS G GD
Sbjct: 453 LVIKDPWPGM-------MRTIYG--------DHERFVKTYFSTFK---GMYFT--GDGAR 492
Query: 600 RTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQL 657
R GYY GR DD +N+ G ++ + EIE +A+ ++ V E A +G P G + +
Sbjct: 493 RDEDGYYWITGRVDDVLNVSGHRLGTAEIE---SALVAHPKVAEAAVVGRPDDIKG-QGI 548
Query: 658 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717
V K P D +LR + V+K++ P+ K + P LP+T + K+MRR+LR
Sbjct: 549 YAFVTLKGG-EEPSD--ELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILR 605
Query: 718 K 718
K
Sbjct: 606 K 606
|
Length = 637 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 7e-35
Identities = 173/662 (26%), Positives = 274/662 (41%), Gaps = 84/662 (12%)
Query: 116 ISSFSNFQEF---SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLP 172
+SS + E SV +P +W + ++ + EN + +W
Sbjct: 26 VSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKWEGDEVCSENLDVRK--GPISIEWFK 83
Query: 173 GAFVNPAKNCLSVNSKRSL-DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
G N NCL N + D I I W EG+ S+T EL V +A L +G
Sbjct: 84 GGKTNICYNCLDRNVEAGNGDKIAIYW--EGNEPGFDASLTYSELLDRVCQLANYLKDVG 141
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG A+ I +PM + + LA G + + F++ ++ R+ K K + T +
Sbjct: 142 VKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNA 201
Query: 292 IIRGDKSIPLYSRVIDAQAPLAIVIPAKG-----------SSFSMKLRDG------DISW 334
+ RG K+I L ++DA A+ AK + +MK D D+ W
Sbjct: 202 VKRGPKTINL-KDIVDA----ALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWW 256
Query: 335 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT-------NATPFKAAA 387
D + E E+ E P+ +L++SG+TG+PK + T AT FK A
Sbjct: 257 QDVVPNYPTKCEVEWVDAEDPL----FLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYA- 311
Query: 388 DAWCHMDIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSP--LGSGFA-KFVQ 443
D + D+ + GW+ G ++ Y +LNGA++ ++ G+P SG V
Sbjct: 312 -----FDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVD 366
Query: 444 DAKVTMLGVVPSIVRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLW---LMGRALY 498
KVT+ P++VR+ + + S+R GS GE N + W ++G +
Sbjct: 367 KYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 426
Query: 499 KPVIEYCGGTEIGGGFIT---GSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMG 555
P+ + TE GG IT G+ Q A F P G + I+ G I G
Sbjct: 427 -PISDTWWQTETGGFMITPLPGAWPQKPGSATF--PFFGVQPVIVDEKGKEIEGECSGY- 482
Query: 556 ELALSPLIFGASSTLL--NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRAD 613
L + GA TL + + YF GD R GYY GR D
Sbjct: 483 -LCVKKSWPGAFRTLYGDHERYETTYFKPFAG-----YYFSGDGCSRDKDGYYWLTGRVD 536
Query: 614 DTMNLGGIKVSSVEIERICNAVDSNVL--ETAAIGVPPPDGGPEQLTIVVVFKDSNYTPP 671
D +N+ G ++ + E+E +A+ S+ E A +G+ G V + + Y+
Sbjct: 537 DVINVSGHRIGTAEVE---SALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYS-- 591
Query: 672 DLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK----QLAQLDQNS 727
+LR S V+ ++ + P LP+T + K+MRR+LRK QL +L S
Sbjct: 592 --EELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTS 649
Query: 728 KL 729
L
Sbjct: 650 TL 651
|
Length = 666 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 1e-33
Identities = 167/639 (26%), Positives = 262/639 (41%), Gaps = 80/639 (12%)
Query: 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVN 177
+ F + S+ PE +W + PPQ IL ++ + P +W G N
Sbjct: 2 RYEEFYQRSIEQPEAFWAE--QARRIDWQTPPQRIL-------DYSNPPFARWFAGGRTN 52
Query: 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPV----------KSMTLKELRAEVWLVAYAL 227
N L R DE L + +++T ++L EV + A AL
Sbjct: 53 LCHNALD------------RHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASAL 100
Query: 228 NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIF 287
ALG+ +G + I MPM +V LA G I + FAS ++ R+ + K I
Sbjct: 101 RALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIV 160
Query: 288 TQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKL--------RDGDISWLDFLE 339
+ D +RG K IP Y ++DA A P L RD D + L
Sbjct: 161 SADAGMRGGKVIP-YKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAALR--- 216
Query: 340 RVRKLKENEFAAVEQPVEAFTN-----ILFSSGTTGEPKAIPW-TNATPFKAAADAWCHM 393
++E A V PVE + IL++SGTTG+PK + A W
Sbjct: 217 -----TQHEDAQV--PVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF 269
Query: 394 DIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPL---GSGFAKFVQDAKVTM 449
IR ++ +++GW++G ++VYA LL GA+ LY G P + V+ V
Sbjct: 270 GIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRT 329
Query: 450 LGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG 507
+ P+ +R K + +D SS+ GE + W+ L KPVI+
Sbjct: 330 MFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWI-TDGLGKPVIDNYWQ 388
Query: 508 TEIGGGFIT---GSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLI 563
TE G + G L+ L + P G L +L G P N G+ + PL
Sbjct: 389 TETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVV-PPLP 447
Query: 564 FGASSTLLN--ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGI 621
G ST+ A Y+S + L D R GY GR DD +N+ G
Sbjct: 448 PGCLSTVWGDDARFLKTYWSHFK----RPLYSSFDWGIRDEDGYTFILGRTDDVINVAGH 503
Query: 622 KVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIV-VVFKDSNYT--PPDLNQLRM 678
++ + EIE + +V E A +GV G Q+ +V + K+S+ D + +
Sbjct: 504 RLGTREIEESV-SSHPSVAEVAVVGVHDELKG--QVAVVFAILKESDSAGDAHDPHAVET 560
Query: 679 SFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717
V ++L + + + V + +LP+T + K++RR ++
Sbjct: 561 GMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQ 599
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-28
Identities = 126/563 (22%), Positives = 194/563 (34%), Gaps = 129/563 (22%)
Query: 189 RSLDDIVIRWCDEGDGGLPV----KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM 244
++L D++ V + +T +EL A V +A L ALG+ G + + +P
Sbjct: 15 QTLGDLLAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPN 74
Query: 245 NVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSR 304
V++Y A+ G I V + + EI R S+AKA D G L
Sbjct: 75 VAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIAD-RFSGFDYAALARE 133
Query: 305 VIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF 364
+++ +P D+ A
Sbjct: 134 LLEE-------LP-------------DV-------------------------AL--FQL 146
Query: 365 SSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMM---GPWLVYASLL 421
S GTTG PK IP T+ +A + + + P L+ A L
Sbjct: 147 SGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLA 206
Query: 422 NGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
G + + SP ++ KVT +VP+++ W D D SS+R G
Sbjct: 207 GGTVVLHHPPSP--DVAFPLIEREKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQVGG 264
Query: 482 EASNVDEYLWLMGR---ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLF 538
+ + L R L P+ + G E G T L M +
Sbjct: 265 --APLSP--ELARRVEERLGCPLQQVFGMAE-GLVNYTR-------LDDPPDVIMRTQGR 312
Query: 539 ---------ILGNDGCPIPQNVPGMGELALSPLIFGASSTL--------LNANHY--DVY 579
I+ + G P+P G L+ T+ NA + D +
Sbjct: 313 PISPADEIRIVDDQGEPVPPGEVGE-------LLTRGPYTIRGYYRAPEHNARAFTDDGF 365
Query: 580 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS-- 637
+ R GD+ + GYYR GR D +N GG K+S EIE N + S
Sbjct: 366 Y------------RTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIE---NLLLSHP 410
Query: 638 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLR---MSFNSAVQKKLNPLFKV 694
V + A +G+P G E++ VV + P L +LR A FK+
Sbjct: 411 AVADAAVVGMPDEVLG-ERICAFVVPRGG--AAPTLAELRAFLREQGLAK-------FKL 460
Query: 695 -SHVVPLPSLPRTATNKVMRRVL 716
+ + SLP T KV ++ L
Sbjct: 461 PDRLEVVDSLPLTPVGKVDKKAL 483
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-27
Identities = 135/541 (24%), Positives = 209/541 (38%), Gaps = 86/541 (15%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ +T EL A V A AL ALG+ KG +AI P + + V+ L + AG +VV +
Sbjct: 29 QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTR 88
Query: 269 FASLEISARLRISKAKAIFTQDLII----RGDKSIPLYSRVIDAQAPLAIVIPAKGSSFS 324
+ + E + L AKA+F L + +P V+ I + +
Sbjct: 89 YTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVV-------ICETEEDDPHT 141
Query: 325 MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK 384
K+ ++ DFL + A E + +ILF+SGTTG PK T+
Sbjct: 142 EKM----KTFTDFLAA----GDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLS 193
Query: 385 AAADAWCH-MDIRKAD--IVAWPT--NLGWMMGPWLVYASLLNGASIALYNGSPLGSGFA 439
AAD W + + + D + A P G+ G A L+ GA+I PL
Sbjct: 194 NAAD-WAEYLGLTEGDRYLAANPFFHVFGYKAG-VN--APLMRGATIL-----PL----P 240
Query: 440 KF--------VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 491
F ++ ++T+L P++ + D SS+R TG AS L
Sbjct: 241 VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLR-LAVTGAASMPVALLE 299
Query: 492 LMGRAL-YKPVIEYCGGTEIGGGFITGSLL--QAQSLAAFS-TPAMGCKLFILGNDGCPI 547
L V+ G +E G T + L +++A T G + I+ G +
Sbjct: 300 RFESELGVDIVLTGYGLSE-ASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEV 358
Query: 548 PQNVPGMGELALSPLIFGASSTLLNANHYDV---YFSGMPSRNGQILR-----RHGDVFE 599
P GEL L+ G +V Y+ P + GD+
Sbjct: 359 PVGEV--GEL----LVRG----------PNVMKGYY-DDPEATAAAIDADGWLHTGDLGR 401
Query: 600 RTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 659
GY R D +GG V E+E + + V E A IGVP G
Sbjct: 402 LDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPA-VAEAAVIGVPDERLGEVGKAY 460
Query: 660 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRK 718
VV+ + T +L +++ K +KV + L LP+ AT KV++R LR+
Sbjct: 461 VVLKPGAELTEEEL----IAYCREHLAK----YKVPRSIEFLDELPKNATGKVLKRALRE 512
Query: 719 Q 719
+
Sbjct: 513 K 513
|
Length = 513 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-26
Identities = 163/644 (25%), Positives = 261/644 (40%), Gaps = 90/644 (13%)
Query: 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCIL-RENPNGENHLSNPGGQWLPGAFV 176
S+S F + S+ +PE +W + + P +L NP P +W G
Sbjct: 3 SYSEFYQRSIDDPEAFWAEQARRID--WQTPFTQVLDYSNP--------PFARWFVGGRT 52
Query: 177 NPAKNCLSVNSKRSLDDIVIRWCD-EGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKG 235
N N + + + + + + E D ++ T ++L EV +A L +LG+ +G
Sbjct: 53 NLCHNAVDRHLAKRPEQLALIAVSTETD---EERTYTFRQLHDEVNRMAAMLRSLGVQRG 109
Query: 236 SAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRG 295
+ I MPM + LA G I + FAS ++AR+ +K I + D RG
Sbjct: 110 DRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRG 169
Query: 296 DKSIPLYSRVIDAQAPLAIVIPAKGSSFS-----MKLRDG-DISWLDFLERVRKLKENEF 349
K +P Y ++D LA P M G D+ + +
Sbjct: 170 GKVVP-YKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQ--------H 220
Query: 350 AAVEQPVE-----AFTNILFSSGTTGEPK-----------AIPWTNATPF--KAAADAWC 391
PVE + IL++SGTTG+PK A+ + T F KA +C
Sbjct: 221 LGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFC 280
Query: 392 HMDIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPL---GSGFAKFVQDAKV 447
DI GW++G ++VYA LL G + +Y G P + + V+ KV
Sbjct: 281 ASDI------------GWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKV 328
Query: 448 TMLGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDE--YLWLMGRALYKPVIE 503
+ P+ +R K + +D SS+R GE +DE W+ AL PVI+
Sbjct: 329 NRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEP--LDEPTASWISE-ALGVPVID 385
Query: 504 YCGGTEIGGGFIT---GSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELAL 559
TE G + G + L + P G + +L G P N G+ L +
Sbjct: 386 NYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGV--LVI 443
Query: 560 S-PLIFGASSTLL--NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTM 616
PL G T+ + Y+S G+ + D R + GYY GR DD +
Sbjct: 444 EGPLPPGCMQTVWGDDDRFVKTYWSLF----GRQVYSTFDWGIRDADGYYFILGRTDDVI 499
Query: 617 NLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIV-VVFKDSNY--TPPDL 673
N+ G ++ + EIE + V E A +GV G Q+ + VV KDS+
Sbjct: 500 NVAGHRLGTREIEE-SISSHPAVAEVAVVGVKDALKG--QVAVAFVVPKDSDSLADREAR 556
Query: 674 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717
L + V +L + + + V + +LP+T + K++RR ++
Sbjct: 557 LALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQ 600
|
Length = 629 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-23
Identities = 129/539 (23%), Positives = 207/539 (38%), Gaps = 52/539 (9%)
Query: 192 DDIVIRWCDEGDGG-----LPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV 246
+ R +EG G S+T EL+ EV AL LG+++ + + + +
Sbjct: 7 VYFLDRHLNEGRGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTP 66
Query: 247 NSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVI 306
+ + G + V I + L S+A+ L+I + + +
Sbjct: 67 EFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARV-----LVISEEL-WEVLKPAL 120
Query: 307 DAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVE-AFTNILFS 365
L VI G+ L + E AA + AF L+S
Sbjct: 121 QKDPHLRHVIVVGGAG-------PGALSYAQL--IATAAEELEAAATSADDMAFW--LYS 169
Query: 366 SGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIVAWPTNL--GWMMGPWLVYASLL 421
SG+TG PK + + A+A+ + I + D+V L + +G L + L
Sbjct: 170 SGSTGRPKGVVHLHHDM-LVTAEAYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFP-LS 227
Query: 422 NGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
GA+ L P ++ K T+ VP++ + D SS+R S G
Sbjct: 228 VGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAG 287
Query: 482 EASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFIL 540
EA + + + L+ I + G TE+ F++ + A P G ++ ++
Sbjct: 288 EA--LPAEIGYRWKELFGLEILDGIGSTEMLHIFLS-NRPGAVKYGTSGKPVPGYEVKLV 344
Query: 541 GNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFER 600
DG + G EL + G SS N + + G+ R GD + R
Sbjct: 345 DEDGEEVADGEIG--EL----WVRGDSSAAGYWNRRE---KTRETFVGEWTRT-GDKYYR 394
Query: 601 TSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIV 660
GYY GR+DD + + GI VS E+E VLE A +G D G +
Sbjct: 395 DEDGYYWYCGRSDDMLKVSGIWVSPFEVED-ALLQHPAVLEAAVVGAEDED-GLTKPKAF 452
Query: 661 VVFKDSNYTPPDL-NQLRMSFNSAVQKKLNPLFKVSH-VVPLPSLPRTATNKVMRRVLR 717
VV KD P+L +L+ V+ KL P +K + + LP+TAT K+ R LR
Sbjct: 453 VVLKDGYQPSPELETELK----DFVKDKLAP-YKYPRWIEFVDELPKTATGKIQRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 95/371 (25%), Positives = 155/371 (41%), Gaps = 45/371 (12%)
Query: 362 ILFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIV--AWPTNLGWMMGPWLVY 417
L++SGTTG+PK + + P A+A+ + ++ D + + + +G L++
Sbjct: 96 WLYTSGTTGKPKGVMHRHRDPL-TFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLF 154
Query: 418 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWS----- 472
L +GAS L G P + + T+L VP++ R ++ S
Sbjct: 155 P-LFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYR-----ALLESGAGSAPLFR 208
Query: 473 SIRCFGSTGEASNVDEY-LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP 531
S+R S GEA W A +++ G TE+ FI+ A+ P
Sbjct: 209 SVRLCVSAGEALPAGLAERWA--EATGIEILDGIGSTEVLHIFISNRPGAAR-PGTTGRP 265
Query: 532 AMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQIL 591
G + ++ G +P G +L + G S + +P + + L
Sbjct: 266 VPGYEARLVDESGREVPAGTVG--DL----WVRGPSLA--------PGYWNLPEKTQRTL 311
Query: 592 R----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 647
R R GD F R + G+YR GRADD + + G VS +E+E + V E A + V
Sbjct: 312 RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPA-VAEAAVVAV 370
Query: 648 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSH-VVPLPSLPRT 706
P DG +L VV + L + F ++++L +K + L +LPRT
Sbjct: 371 PDEDGL-VRLKAFVVPRPGEAIQQLLERDLHRF---LRERL-APYKCPRQIEFLDTLPRT 425
Query: 707 ATNKVMRRVLR 717
AT K+ R LR
Sbjct: 426 ATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 93/381 (24%), Positives = 139/381 (36%), Gaps = 70/381 (18%)
Query: 362 ILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKAD--IVAWP---TNLGWMMGPWLV 416
IL++SGTTG PK + T+A AA A + +R D + P N V
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAY----SV 141
Query: 417 YASLLNGASIALYNG-SPLGSGFAKFVQDAKVT---MLGVVPSIVRTWKSTNCIDGYDWS 472
YA+LL GA++ L S S F V+ T +LG + +I+ K D D
Sbjct: 142 YAALLVGATLVLLPRFSA--SRFWDQVRKHGATVFNLLGAMAAIL--MKQPPSPDDRD-H 196
Query: 473 SIRCFGSTGEASNVDEYLWLMGRALYKP--------VIEYCGGTEIGGGFITGSLLQAQS 524
+R + A++ ++E G TE G I
Sbjct: 197 PLRFVFGAP-----------LPAAIWPAFEERFGVKLVEGYGMTETGVPIIAP--GDPAP 243
Query: 525 LAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584
+ P G ++ I+ DG +P G EL ++ + +Y GMP
Sbjct: 244 PGSCGRPRPGVEVRIVDEDGREVPPGEVG--EL----VVRPRRPWAMFKGYY-----GMP 292
Query: 585 SRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVL 640
+ R GD R G+ R D + G +SS E+E A + V
Sbjct: 293 EATAKAWRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPA-VA 351
Query: 641 ETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQL---RMSFNSAVQKKLNPLFKVSHV 697
E A + VP G E +VV+ P L + R+ P F V
Sbjct: 352 EAAVVAVPSELGEDEVKAVVVLRPGETLDPEALLEFCRDRL-----------PYFMVPRY 400
Query: 698 VP-LPSLPRTATNKVMRRVLR 717
+ + LP+T T K+ + LR
Sbjct: 401 IEFVDELPKTPTEKIQKAELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-22
Identities = 117/553 (21%), Positives = 205/553 (37%), Gaps = 106/553 (19%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSIAD 267
T EL V +A AL ALG+ KG +A+ + NS + Y A+ G ++ I
Sbjct: 32 TTYAELDERVNRLANALRALGVKKGDRVAV---FDWNSHEYLEAYFAVPKIGAVLHPINI 88
Query: 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVI----------P 317
EI+ L ++ + + + +PL + ++ + VI
Sbjct: 89 RLKPEEIAYILNDAEDRVVLV------DSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLA 142
Query: 318 AKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPW 377
+ + L DF + + EN+ AA +L++SGTTG PK +
Sbjct: 143 PEVGEYEE-LLAAASDTFDFPD----IDENDAAA----------MLYTSGTTGHPKGVVL 187
Query: 378 TNATPF--KAAADAWCHMDIRKAD--IVAWPTN----LGWMMGPWLVYASLLNGASIALY 429
++ F A AW + + + D +V P G Y +L+ GA +
Sbjct: 188 SHRNLFLHSLAVCAW--LKLSRDDVYLVIVPMFHVHAWGLP------YLALMAGAKQ-VI 238
Query: 430 NGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 489
++ +VT VP+I + D+SS+R G A
Sbjct: 239 PRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAA------ 292
Query: 490 LWLMGRALYK--------PVIEYCGGTEIGGGFITGSLLQAQSLAAFS------TPAMGC 535
+ AL + +++ G TE ++ + Q ++ P G
Sbjct: 293 ---LPPALLREFKEKFGIDLVQGYGMTETSP-VVSVLPPEDQLPGQWTKRRSAGRPLPGV 348
Query: 536 KLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLNANHYDVYFSGMPSRNGQILR-- 592
+ I+ +DG +P + +GE+ + P + Y+ P + +
Sbjct: 349 EARIVDDDGDELPPDGGEVGEIIVRGPWLMQG------------YW-NRPEATAETIDGG 395
Query: 593 --RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650
GDV GY R D + GG + E+E + V E A IGVP
Sbjct: 396 WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPA-VAEVAVIGVPDE 454
Query: 651 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATN 709
G + +VV+ + +L ++ +L FK+ + + LPRT+
Sbjct: 455 KWGERPVAVVVLKPGATLDAKELRAF-------LRGRLAK-FKLPKRIAFVDELPRTSVG 506
Query: 710 KVMRRVLRKQLAQ 722
K+++RVLR+Q A+
Sbjct: 507 KILKRVLREQYAE 519
|
Length = 521 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 7e-22
Identities = 101/383 (26%), Positives = 156/383 (40%), Gaps = 61/383 (15%)
Query: 362 ILFSSGTTGEPKAIPWTNATPFKAAADAWCHM----DIRKADIVAWPT-NLGWMMGPWLV 416
+++SGTTG PK +P P A A + +M D+R D+ W + GW G L
Sbjct: 93 QMYTSGTTGLPKGVPV----PLNALAAFYAYMRYAIDLRDDDVF-WNIADPGWAYG--LY 145
Query: 417 YA---SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-IDGYDWS 472
YA L G + G ++ VT P+ R +
Sbjct: 146 YAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAARIKL 205
Query: 473 SIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA 532
+R S GE N + W L + ++ G TE TG + A A
Sbjct: 206 KLRVASSAGEPLNPEVVRWF-QANLGVTIHDHYGQTE------TGMPVGNHHALAHEVRA 258
Query: 533 --MGC-----KLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPS 585
MG ++ +L +DG P+ PG +LA I ASS LL + Y P
Sbjct: 259 GSMGLPLPGYRIAVLDDDGQPLADGEPG--QLA----IDVASSPLLWFSGY----WDDPE 308
Query: 586 RNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLE 641
+ +++ GD+ ER GY+ GRADD + G ++ ++E V E
Sbjct: 309 KTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVES-ALLEHPAVAE 367
Query: 642 TAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL-NQLRMSFNSAVQKKLNPLFKVSHVVP- 699
A +GVP P G E + VV K+ +L +L+ V+K+L+ +H P
Sbjct: 368 AAVVGVPDPLRG-EIVKAFVVLKEGYAGSDELAEELQ----LFVKKRLS-----AHAYPR 417
Query: 700 ----LPSLPRTATNKVMRRVLRK 718
+P+LP+T + K+ R +LR+
Sbjct: 418 EVEFVPALPKTPSGKIQRFLLRQ 440
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 1e-21
Identities = 104/423 (24%), Positives = 180/423 (42%), Gaps = 50/423 (11%)
Query: 335 LDFLERVRKLKEN------EFAAVE--QPVEAFTNILFSSGTTGEPKAIPWTNATPFKAA 386
L + + ++K+KEN E+ VE P+ IL++SGTTG KA+ +N
Sbjct: 228 LSWYDEIKKIKENNQSPFYEYVPVESSHPL----YILYTSGTTGNSKAVVRSNGPHLVGL 283
Query: 387 ADAWCHMDIRKADIVAWP-TNLGWMMGPWLVYASLLNGASIALYNGSPLGSG-----FAK 440
W + + V + +++GW+ +Y SL G + ++ G + +
Sbjct: 284 KYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWN 343
Query: 441 FVQDAKVTMLGVVPSIVRTWK-----STNCIDGYDWSSIR--CFGSTGEASNVDEYLWLM 493
++ KVT +P +R +T YD S+++ G ++ EY+
Sbjct: 344 TIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYI--E 401
Query: 494 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPG 553
+ K Y G TEIG ++ A P++ K IL DG + N
Sbjct: 402 NKLKIKSSRGY-GQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVN--E 458
Query: 554 MGELALS-PLIFGASSTLL-NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGR 611
+GE+A P+ ++T N + FS P GD+ + GYY R
Sbjct: 459 IGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPG-----YYNSGDLGFKDENGYYTIVSR 513
Query: 612 ADDTMNLGGIKVSSVEIERICNAVDS-----NVLETAAIGVPPPDGGPEQLTIVVVFKDS 666
+DD + + G KV IE S VLE +IG+ PD + ++V+ +D
Sbjct: 514 SDDQIKISGNKVQLNTIE------TSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQ 567
Query: 667 NYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 726
+ DLN+L+ N+ + + + L + ++ + LP+T T K+ R+++ K L D N
Sbjct: 568 SNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLN--DSN 625
Query: 727 SKL 729
+L
Sbjct: 626 YQL 628
|
Length = 647 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 1e-21
Identities = 146/584 (25%), Positives = 227/584 (38%), Gaps = 101/584 (17%)
Query: 170 WLPGAFVNPAKNCLS--VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYAL 227
WL VN A + + R D + +R+ D + T KEL+ A L
Sbjct: 36 WLETGKVNIAYEAIDRHADGGRK-DKVALRYLDAS----RKEKYTYKELKELSNKFANVL 90
Query: 228 NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIF 287
LG++KG + I MP L + G IV + ++F + RL S+AK +
Sbjct: 91 KELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLI 150
Query: 288 TQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKE 346
T L R P L V+ + G + + +E+ +
Sbjct: 151 TTPA---------LLERKPADDLPSLKHVLLVGEDV---EEGPGTLDFNALMEQASDEFD 198
Query: 347 NEFAAVEQPVEAFTNIL-FSSGTTGEPK-AIPWTNATPFKAAADAWCHMDIRKADIVAWP 404
E+ E IL ++SG+TG+PK + NA + +D+ + D+ W
Sbjct: 199 IEWTDREDGA-----ILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYV-LDLHEDDVY-WC 251
Query: 405 T-NLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKS 462
T + GW+ G + ++A LNGA+ + G + + ++D KVT+ P+ +R
Sbjct: 252 TADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMG 311
Query: 463 --TNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL 520
+ + YD SS+R S GE N + W M + P+ + TE GG I
Sbjct: 312 AGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGM-KVFGLPIHDNWWMTETGGIMIA---- 366
Query: 521 QAQSLAAFSTPAM------------GCKLFILGNDGCPIPQNVPGMGELALSPLIFGASS 568
+ PAM G + I+ + G +P N MG LA+ G S
Sbjct: 367 --------NYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNR--MGNLAIKK---GWPS 413
Query: 569 T----LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVS 624
N Y+ YF+G + GD GY+ GR DD + G +V
Sbjct: 414 MMRGIWNNPEKYESYFAG-----DWYVS--GDSAYMDEDGYFWFQGRVDDVIKTSGERVG 466
Query: 625 SVEIERICNAVDSNVLETAA------IGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRM 678
E+E S ++E A IG P P G E + V + Y P + +L+
Sbjct: 467 PFEVE-------SKLMEHPAVAEAGVIGKPDPVRG-EIIKAFVALRP-GYEPSE--ELKE 515
Query: 679 SFNSAVQKKLNPLFKVSHVVP-----LPSLPRTATNKVMRRVLR 717
V+K L H P LP+T + K+MRRVL+
Sbjct: 516 EIRGFVKKGLGA-----HAAPREIEFKDKLPKTRSGKIMRRVLK 554
|
Length = 570 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 2e-21
Identities = 119/531 (22%), Positives = 191/531 (35%), Gaps = 116/531 (21%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
+T EL +A AL LG+ G +A +P VV+YLA G ++ I +
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60
Query: 270 ASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVID-AQAPLAIVIPAKGSSFSMKLR 328
E+ LR ++A+ +F +P R D A P
Sbjct: 61 RERELGFILRQARARVLF-----------VPDEFRGFDYAAMP----------------- 92
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD 388
D++ L L++SGTTGEPK + T+ T A
Sbjct: 93 -DDVALL---------------------------LYTSGTTGEPKGVMHTHNTLL-AEVR 123
Query: 389 AWC-HMDIRKADIVAWPTNLGWMMGPWL-VYASLLNGASIALYN-GSPLGSGFAKFVQDA 445
++ + + D+V P+ L + G + LL GA++ L + P + + +++
Sbjct: 124 SYVERLGLTPDDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDP--ARALELIREH 181
Query: 446 KVT-MLGVVP---SIVRTWKSTNCIDGYDWSSIRCFGSTGE------ASNVDEYLWLMGR 495
VT +G P ++ + G D S+R F G A E L
Sbjct: 182 GVTFTMGATPFLADLLAAADAA----GPDLPSLRVFLCGGAPVPRELARRAAEALGAK-- 235
Query: 496 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST---PAMGCKLFILGNDGCPIPQNVP 552
V+ G TE +T +T P G ++ I+ +DG +P
Sbjct: 236 -----VVRAYGMTE--VPLVTVGTPDDPDDKRAATDGRPVPGVEVRIVDDDGNDVPPGEE 288
Query: 553 GMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRA 608
G P +F Y P R GD+ + GY R
Sbjct: 289 GE-LQVRGPQLFLG------------YL-DPPDNTEAFTDDGWFRTGDLGRLDADGYLRI 334
Query: 609 HGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNY 668
GR D + GG +S+ EIE + + V E A + +P G E++ VVV
Sbjct: 335 TGRKKDIIIRGGENISAREIEDLLLRHPA-VAEVAVVAMPDERLG-ERVCAVVVPAPG-- 390
Query: 669 TPPDLNQLRMSFNSA-VQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
L +L + + K+ P + + +LPRT + KV + LR+
Sbjct: 391 ASLTLAELTEHLAAQGLAKQKWP----ERLEVVDALPRTPSGKVQKFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 4e-20
Identities = 109/458 (23%), Positives = 179/458 (39%), Gaps = 58/458 (12%)
Query: 281 SKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL-------AIVIPAKGSSFSMKLRDGDIS 333
+A + RGD+ L RV + A + A+ IP + L DI
Sbjct: 11 DRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPG----TTQ-LGPKDI- 64
Query: 334 WLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM 393
R R + A V + + F+SGTTG PK + T++ P +
Sbjct: 65 ------RYRLERAGARAIVTSADDPAL-LYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWL 117
Query: 394 DIRKADIVAWPTNLGWMMGPWL-VYASLLNGASIALYNGSPLGSGFA-KFVQDAKVTMLG 451
D+R D+ + GW G W ++A L GA++ +Y+G + + ++ VT
Sbjct: 118 DLRPDDLHWTIADPGWAKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFC 177
Query: 452 VVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIG 511
P+ R + + YD+S +R S GE N E + A P+ + G TE G
Sbjct: 178 APPTAYRMLLQQD-LSSYDFSHLRHVVSAGEPLN-PEVIDWWRAATGLPIRDGYGQTETG 235
Query: 512 GGFITGSLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASST 569
+ + + S PA G ++ I+ ++G +P G++A+
Sbjct: 236 ---LLVANFPGMEVKPGSMGRPAPGYRVAIIDDEGNELPPGEE--GDIAVRV-------- 282
Query: 570 LLNANHYDVYFSGM---PSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIK 622
F G P + +R GD + GY+ GRADD + G +
Sbjct: 283 ---KPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYR 339
Query: 623 VSSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSF 680
+ E+E +A+ + V E A +G P P G E + VV Y P + +L
Sbjct: 340 IGPFEVE---SALIEHPAVAEAAVVGSPDPVRG-EVVKAFVVLA-PGYQPSE--ELAKEL 392
Query: 681 NSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
V+K+ P + + LP+T + K+ R LR
Sbjct: 393 QEHVKKRTAPYKYPREIEFVEELPKTVSGKIRRVELRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 7e-20
Identities = 114/519 (21%), Positives = 186/519 (35%), Gaps = 55/519 (10%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+T +L + +A L LGL +G +A+ P ++ ++L + AG IV + S
Sbjct: 9 TELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPS 68
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLA-----IVIPAKGSSF 323
+ E++ +L+ISK K IF D +V +A L IV+ +
Sbjct: 69 YTPDELAHQLKISKPKLIFC-------DPD--ELDKVKEAAKELGPVVRIIVLDSAPDGV 119
Query: 324 SMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTN---A 380
LR D+ + +L+SSGTTG PK + ++
Sbjct: 120 ---LRIEDLLEPRLGAEDEFRPTPLIDGKDDTAA----LLYSSGTTGLPKGVMLSHKNII 172
Query: 381 TPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAK 440
D D+V G ASLL GA++ + + F K
Sbjct: 173 ANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSET-FLK 231
Query: 441 FVQDAKVTMLGVVPSI-VRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 499
++ KVT L +VP I V KS D YD SS+R S + + L R
Sbjct: 232 LIEKYKVTSLFLVPPIAVALAKSPLV-DKYDLSSLRVIFSGAAPLSKELQEELRKRFPNT 290
Query: 500 PVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPI-PQNVPGMGELA 558
+ + G TE G T + + + + I+ DG N GEL
Sbjct: 291 TIKQGYGMTET-GPATTLTPPGDEKPGSVGRLVPNVEAKIVDEDGGKSLGPNER--GELC 347
Query: 559 L-SPLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRAD 613
+ P I Y + + I GD+ G + R
Sbjct: 348 VKGPQIMKG------------YLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKK 395
Query: 614 DTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 673
+ + G +V E+E + V + A IG+P G VV+ S T ++
Sbjct: 396 ELIKYKGYQVPPAELEAVLLEHP-KVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEV 454
Query: 674 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712
++ A K+L VV + +P++ + K++
Sbjct: 455 KDY-VAKKVAKYKQLR-----GGVVFVDEIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-19
Identities = 102/372 (27%), Positives = 160/372 (43%), Gaps = 39/372 (10%)
Query: 362 ILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPT-NLGWMMG-PWLVYAS 419
+ F+SGTTG+PK + + A A +D+R D+ W T + GW+ G + + A
Sbjct: 94 LHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY-WCTADPGWVTGTSYGIIAP 152
Query: 420 LLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN--CIDGYDWSSIRCF 477
LLNG ++ + G + +++ KVT+ P+ +R YD SS+R
Sbjct: 153 LLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHI 212
Query: 478 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKL 537
S GE N + +W + L P+ + TE G I + P G +
Sbjct: 213 ASVGEPLNPEVVVWGE-KVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPLPGIEA 271
Query: 538 FILGNDG---CPIPQNVPG-MGELALS---PLIFGASSTLLNANHYDVYFSGMPSRNGQI 590
++ DG P+ PG +GELAL P +F L N Y F +G
Sbjct: 272 AVIERDGDGLTPVTG--PGQVGELALKPGWPSMF--RGYLGNEERYASSF-----VDGWY 322
Query: 591 LRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650
L GD+ R GY+ GRADD + G V E+E + V E IG P P
Sbjct: 323 LT--GDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPA-VAEAGVIGKPDP 379
Query: 651 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVP-----LPSLPR 705
G E + V + + P + +LR + +++L + V P + +LP+
Sbjct: 380 VAG-EIVKAFVSLR-PGFEPSE--ELRRELLTFARQRLG-----AAVAPREIHFVDNLPK 430
Query: 706 TATNKVMRRVLR 717
T + K+MRR+L+
Sbjct: 431 TRSGKIMRRLLK 442
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 4e-19
Identities = 89/378 (23%), Positives = 149/378 (39%), Gaps = 61/378 (16%)
Query: 361 NILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADI--VAWP----TNLGWMMGPW 414
IL++SGTTG PK + T+ A +A +D+ D+ +A P +++
Sbjct: 5 LILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLL--- 61
Query: 415 LVYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPS-IVRTWKSTNCIDGYDWS 472
+L G ++ L P ++ +VT +VP+ R + + YD S
Sbjct: 62 ---PALAAGGTVVLMPKFDP--EAVLDLIERHRVTHTFLVPTMFQRLLRLPD-FARYDLS 115
Query: 473 SIRCFGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFST- 530
S+R + ++ + PV + G TE G S L +
Sbjct: 116 SLRLIIYGAAPMPAELKRAMI--EWFGPVFVQGYGMTETGPTTTLLS--PEDWLRKLGSV 171
Query: 531 --PAMGCKLFILGNDGCPIPQNVPG-MGELAL-SPLIFGASSTLLNANHYDVYFSGMPSR 586
P G ++ I+ DG +P PG +GE+ + P + Y+ P
Sbjct: 172 GRPVPGVEVRIVDEDGRELP---PGEVGEIVVRGPAVM------------AGYW-NRPEA 215
Query: 587 NGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVL 640
+ LR GD+ GY R D + GG + E+E N + + V
Sbjct: 216 TAEALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVE---NVLLAHPAVA 272
Query: 641 ETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVP 699
+ A IGVP + G E + VVV + D +L + +++L +KV V
Sbjct: 273 DVAVIGVPDEEWG-EAVVAVVVLRPG--ATLDAEELI----AFCRERLAG-YKVPKSVEF 324
Query: 700 LPSLPRTATNKVMRRVLR 717
+ LPR A+ K+++R LR
Sbjct: 325 VDELPRNASGKILKRELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-18
Identities = 129/552 (23%), Positives = 191/552 (34%), Gaps = 121/552 (21%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSI---- 265
++T EL + +A L ALG+ G +A+ + N LA+ AG + I
Sbjct: 74 TLTYAELDEQSNALARGLLALGVRAGDGVAV---LARNHRGFVLALYAAGKVGARIILLN 130
Query: 266 ----ADSFASLEISARLRISKAKAIFTQD-LIIRGDKSIPLYSRVIDAQAPLAIVIPAKG 320
A E++AR KA+ D P R+ A
Sbjct: 131 TGFSGPQLA--EVAARE---GVKALVYDDEFTDLLSALPPDLGRL------RAWGGNPDD 179
Query: 321 SSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTN----ILFSSGTTGEPKAIP 376
S D + D + P+ ++ +SGTTG PK P
Sbjct: 180 DEPS---GSTDETLDDLIAGSST----------APLPKPPKPGGIVILTSGTTGTPKGAP 226
Query: 377 WTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN-GSPLG 435
+P A V + ++ A + + A LG
Sbjct: 227 RPEPSPLAPLAGL--------LSRVPFRAGETTLLP-----APMFHATGWAHLTLAMALG 273
Query: 436 SGFA---KF--------VQDAKVTMLGVVPSIVRTWKST--NCIDGYDWSSIRCFGSTGE 482
S +F + K T L VVP ++ + YD SS++ +G
Sbjct: 274 STVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGS 333
Query: 483 ASNVDEYLWLMGRAL--YKPVIE--YCGGTEIGGGFITG--SLLQAQSLAAFSTPAMGCK 536
A + L RAL + PV+ Y G TE+ I L +A P G
Sbjct: 334 ALSP----ELATRALEAFGPVLYNLY-GSTEVAFATIATPEDLAEAPGTVG--RPPKGVT 386
Query: 537 LFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQI---LRR 593
+ IL +G +P+ V G IF + Y G R+ QI L
Sbjct: 387 VKILDENGNEVPRGVVGR--------IFVGNGFPFEG-----YTDG---RDKQIIDGLLS 430
Query: 594 HGDVFERTSGGYYRAH------GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 647
GDV GY+ GR DD + GG V E+E + +V+E A IGV
Sbjct: 431 SGDV------GYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHP-DVVEAAVIGV 483
Query: 648 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSH-VVPLPSLPRT 706
+ G ++L VV D + ++ V+ L +KV VV L LPR
Sbjct: 484 DDEEFG-QRLRAFVVKAPG--AALDEDAIK----DYVRDNLAR-YKVPRDVVFLDELPRN 535
Query: 707 ATNKVMRRVLRK 718
T KV++R LR+
Sbjct: 536 PTGKVLKRELRE 547
|
Length = 549 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 8e-18
Identities = 89/381 (23%), Positives = 146/381 (38%), Gaps = 58/381 (15%)
Query: 362 ILFSSGTTGEPKAIPWT------NATPFKAAADAWCHMDIRKADIVAW-PTNLGWMMGPW 414
++++SGTTG PK + + + + R D V W P + W+ G
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFE----LAPRPGD-VFWTPADWAWIGG-- 145
Query: 415 LVYASLLNGASIALYNGSP-LGSGFAKFVQDAKVTML---GVV-----PSIVRTWKSTNC 465
LL+ ALY G P + +F + ++ GV P+ ++ +
Sbjct: 146 -----LLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGS 200
Query: 466 IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSL 525
+R S GE+ + W L V E+ G TE + L
Sbjct: 201 ERARYDLRLRAVASGGESLGEELLEWAR-DELGLTVNEFYGQTEANLVVGNCAALGPARP 259
Query: 526 AAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL---SPLIFGASSTLLNANHYDVYF-- 580
+ P G ++ ++ + G P+P +GE+A+ P++F Y+
Sbjct: 260 GSMGKPVPGHEVAVVDDAGRPVPPGE--VGEIAVKRPDPVMFLG------------YWNN 305
Query: 581 ---SGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 637
+ +L GD+ R + GY GRADD + G ++ EIE +
Sbjct: 306 PEATAAKFAGDWLLT--GDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPA 363
Query: 638 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHV 697
VLE A +GVP P+ G E + VV + P D +L V+ +L +
Sbjct: 364 -VLEAAVVGVPDPERG-EIVKAFVVLAE-GVEPSD--ELATELQELVKSRLAAHEYPREI 418
Query: 698 VPLPSLPRTATNKVMRRVLRK 718
+ LP T T K+ RR LR+
Sbjct: 419 EFVDELPMTTTGKIRRRELRR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 2e-17
Identities = 125/550 (22%), Positives = 199/550 (36%), Gaps = 145/550 (26%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSI 265
+ +T EL A L LG+ KG +A+ +P N + Y I+ AG +VV +
Sbjct: 23 RKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLP---NCPQFPIAYFGILKAGAVVVPV 79
Query: 266 ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSM 325
+ E+ +L S AK +
Sbjct: 80 NPLYTPRELEHQLNDSGAKVLIV------------------------------------- 102
Query: 326 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT------N 379
IS+ D L L + + A + ++ GTTG PK T N
Sbjct: 103 -----AISFEDALASGAPLPLPVELSPDDL--AV--LQYTGGTTGVPKGAMLTHRNLVAN 153
Query: 380 ATPFKAAADAWCHMDIRKAD--IVAWPTNL----GWMMGPWLVYASLLNGASIALY-NGS 432
AW D + A P L G + + L GA+ L N
Sbjct: 154 VQ----QIAAWVKDLREGEDRFLTALP--LFHIFGLTVN---MLLGLRLGATNVLVPNFR 204
Query: 433 PLGSGFAKFVQDAKVTMLGVVPS----IVRTWKSTNCIDGYDWSSIRCFGSTGEASNV-- 486
P+ K ++ + T+ VP+ ++ + YD+SS+R S G V
Sbjct: 205 PI--NVLKEIKRYRFTIFPGVPTLYNALLNHPEFKK----YDFSSLRLCISGGAPLPVEV 258
Query: 487 -DEYLWLMGRALYKPVIEYCGGTE---------IGGGFITGSLLQAQSLAAFSTPAMGCK 536
+ + G P++E G TE + G GS+ P G +
Sbjct: 259 AERFEEKTG----APLVEGYGLTETSPVTTVNPLDGERKPGSI---------GLPLPGTE 305
Query: 537 LFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG---MPSRNGQILR- 592
+ I+ ++G +P GEL ++ G V G P ++L
Sbjct: 306 VKIVDDEGNELPPGEV--GEL----VVRGP----------QV-MKGYWNRPEETAEVLTD 348
Query: 593 ---RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 649
R GD+ GY+ R D + +GG V EIE + + + VLE A +GVP
Sbjct: 349 GWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPA-VLEAAVVGVPD 407
Query: 650 PDGGPEQLTIVVVFKD-SNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTA 707
P G E + VV K+ ++ T +L ++F +++L +KV V LP++A
Sbjct: 408 PYRG-EAVKAFVVLKEGASLTEEEL----IAF---CRERLAA-YKVPRQVEFRDELPKSA 458
Query: 708 TNKVMRRVLR 717
K++RR LR
Sbjct: 459 VGKILRRELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 7e-17
Identities = 134/549 (24%), Positives = 224/549 (40%), Gaps = 70/549 (12%)
Query: 192 DDIVIRWCDEGDGGL-----PVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV 246
+D++ R EG GG + S++ EL A+V + AL LG+ + + + M V
Sbjct: 7 EDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGV 66
Query: 247 NSVVIYLAIVLAGYIVVSI-----ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPL 301
+ + +L + AG + V++ AD +A + L S+A+ +F
Sbjct: 67 DFPIAFLGAIRAGIVPVALNTLLTADDYAYM-----LEDSRARVVFV------------- 108
Query: 302 YSRVIDAQAPLAIVIPAKGSSFSMKLR----DGDISWLDFLERVRKLKENEFAAVEQPVE 357
+ L ++ A G S ++ R + + E + E A Q +
Sbjct: 109 ------SGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATESEQFKPAATQADD 162
Query: 358 -AFTNILFSSGTTGEPKAIPWTNATPFKAAAD-AWCHMDIRKADIVAWPTNL--GWMMGP 413
AF L+SSG+TG PK + T++ P+ A A + IR+ D+V L + +G
Sbjct: 163 PAFW--LYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGN 220
Query: 414 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSS 473
L + + GA+ L P ++ + T+ VP++ + + D
Sbjct: 221 ALTF-PMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVR 279
Query: 474 IRCFGSTGEASNVDEYLWLMGRALYK-PVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA 532
+R S GEA + + +A + +++ G TE+ F++ +L P
Sbjct: 280 LRLCTSAGEA--LPAEVGQRWQARFGVDIVDGIGSTEMLHIFLS-NLPGDVRYGTSGKPV 336
Query: 533 MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYD---VYFSGMPSRNGQ 589
G +L ++G+ G + PG EL LI G SS + N+ F G +R+G
Sbjct: 337 PGYRLRLVGDGGQDVAAGEPG--EL----LISGPSSATMYWNNRAKTRDTFQGEWTRSG- 389
Query: 590 ILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 649
D + R G Y GR DD + + GI VS EIE VLE A +GV
Sbjct: 390 ------DKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQ-HPAVLEAAVVGVED 442
Query: 650 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATN 709
DG + +V+ L V+ +L P +V + LP+TAT
Sbjct: 443 EDGLIKPKAFIVL--RPGQDIDTA--LETELKEHVKDRLAPYKYPRWIVFVDDLPKTATG 498
Query: 710 KVMRRVLRK 718
K+ R LR+
Sbjct: 499 KIQRFKLRE 507
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 1e-15
Identities = 123/526 (23%), Positives = 207/526 (39%), Gaps = 93/526 (17%)
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
A GL +G +A+ +P ++ +A + G + + + +I RL+ SKAK I T
Sbjct: 61 ACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQASKAKCIVT 120
Query: 289 QDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKL------RDGDISWLDFLERVR 342
D AP I ++ S KL RDG WL+F E ++
Sbjct: 121 -----------------SDELAPAVDSIASECPSLKTKLLVSEHSRDG---WLNFKELLK 160
Query: 343 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT---PFKAAADAWCHMDIRKAD 399
+ E V+ + I F+SGTTG PK ++++ K W +D+ +D
Sbjct: 161 EAST-EHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYW--LDLTPSD 217
Query: 400 IVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKV----------T 448
I+ ++ GW+ W +++ + GA + +++ +F D KV T
Sbjct: 218 IMWNMSDTGWIKAAIWSLFSPWIQGACVFVHH-------LPRF--DPKVILQTLSKYPIT 268
Query: 449 MLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVD---EYLWLMGRALYKPVIEYC 505
P++ R + + Y + S+R + GE N + ++ G LY E
Sbjct: 269 TFCSAPTVYRMLVQQD-LTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTGLDLY----EGY 323
Query: 506 GGTEIG--GGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPL- 562
G TE G G ++ S+ S P + I+ ++G +P G + + P
Sbjct: 324 GQTETGLICANFKGMKIKPGSMGKASPPY---DVQIIDDNGNVLPPGTEGDIGIRVKPTR 380
Query: 563 ---IFGASSTLLNANHYDVYFSGMPSRNGQILRRH----GDVFERTSGGYYRAHGRADDT 615
+F + Y P + +R GD GY+ GRADD
Sbjct: 381 PFCLF---------SCY----VDNPEKTAATIRGDFYITGDRGIMDEDGYFWFVGRADDV 427
Query: 616 MNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 673
+N G ++ E+E +A+ + V+E+A + P P G E + VV + D
Sbjct: 428 INSSGYRIGPFEVE---SALIEHPAVVESAVVSSPDPIRG-EVVKAFVVLA-PQFLSHDP 482
Query: 674 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 719
QL V+ P V + LP+T T K+ R LR +
Sbjct: 483 EQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 94/384 (24%), Positives = 145/384 (37%), Gaps = 72/384 (18%)
Query: 362 ILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNL----GWMMGPWLVY 417
IL +SGTTG PK +P T+ +A + + +D L G ++ +
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS---LL 63
Query: 418 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVR---TWKSTNCIDGYDWSSI 474
A+LL G S+ S F + +VT VP+I + N +
Sbjct: 64 ATLLAGGSVVCPPKFS-ASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPP--PRL 120
Query: 475 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP--- 531
R F + A L + + PV+E G TE + S P
Sbjct: 121 R-FIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTE-------------AAHQIASNPLPP 166
Query: 532 ----------AMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL--LNANHYDVY 579
G ++ IL +DG P+P GE+ + G + T LN
Sbjct: 167 LVRKPGSVGRPAGVEVAILDDDGRPLPPGQ--EGEIVIR----GPNVTAGYLNN------ 214
Query: 580 FSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAV 635
P N + R R GD+ GY GR + +N GG K+S E+E +
Sbjct: 215 ----PEANREAFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRH 270
Query: 636 DSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV- 694
V E GVP G E++ VV + + + +LR +K+L FKV
Sbjct: 271 P-AVAEAVVFGVPDELYG-EEVAAAVVLRAD--SKVTIEELR----DFARKRLAA-FKVP 321
Query: 695 SHVVPLPSLPRTATNKVMRRVLRK 718
++ + +LP+ AT K+ RR L +
Sbjct: 322 KKILFVDALPKGATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 6e-15
Identities = 86/379 (22%), Positives = 148/379 (39%), Gaps = 58/379 (15%)
Query: 362 ILFSSGTTGEPKAIPWT--NATPF-KAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418
++++SG+TG+PK + T N F +A + IR D V ++ + + ++
Sbjct: 104 VIYTSGSTGKPKGVVITHRNICNFLRAEGAI---LGIRPGDRVLQFASIAFDVSILEIFT 160
Query: 419 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 478
+LL G ++ + A+F+ +VT+ + PS++ + S+R
Sbjct: 161 TLLAGGTLVIPPEELRLEDLAEFLNRLRVTVAHLTPSLLALLDPEDV------PSLRTLI 214
Query: 479 STGEA---SNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST---PA 532
GEA + VD W R L G TE +T + + + P
Sbjct: 215 LGGEACPQALVDR--WSKPRRLLN----TYGPTEAT---VTATASRL-TPGKPVNIGRPL 264
Query: 533 MGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY--------DVYFSGM 583
++L + +P G EL I G A Y + +
Sbjct: 265 PNYTCWVLDPDLEPLVPIGAVG--ELC----IGGP----GVARGYLNRPELTAEKFIPDP 314
Query: 584 PSRNGQILR--RHGDVFERTSGG--YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNV 639
N R R GD+ G + GR DD + + G ++ EIE + A+ V
Sbjct: 315 FWLNNPGGRIYRTGDLVRYLEDGSLEF--LGRKDDQVKIRGQRIELGEIEAVLRALPGVV 372
Query: 640 LETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVV 698
+ + + P G +QL + + P + + SA++++L P + V S V
Sbjct: 373 VAAVVLLLDDPGG--KQLVAFLAVDGAAGGEPADVDIALL-RSALRERL-PSYMVPSVYV 428
Query: 699 PLPSLPRTATNKVMRRVLR 717
PL LP TA+ KV R+ LR
Sbjct: 429 PLDELPLTASGKVDRKALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 8e-15
Identities = 99/386 (25%), Positives = 145/386 (37%), Gaps = 82/386 (21%)
Query: 362 ILFSSGTTGEPKAIP------WTNATPFKAAADAWCHMDIRKAD--IVAWPTN------L 407
I+++SGTTG PK + NA A +AW +D + A P +
Sbjct: 93 IIYTSGTTGRPKGVVLTHGNLAANAR---ALVEAW---RWTASDVLLHALPLHHVHGLFN 146
Query: 408 GWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSI----VRTWKST 463
L GAS+ A + ++T+ VP+I + +
Sbjct: 147 ALH-------CPLWAGASVEFLPRFDPQERDALRLLP-RITVFMGVPTIYTRLLEHY-EF 197
Query: 464 NCIDGYDWSSIRCFGSTGEASNVDEYL-W--LMGRALYKPVIEYCGGTEIGGGFITGSLL 520
+ ++R F S A V W G L +E G TE G + L
Sbjct: 198 DDAAAAAARNLRLFVSGSAALPVPVLERWEERTGHTL----LERYGMTETG--MALSNPL 251
Query: 521 QAQSLAAF-STPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIF---------GASST 569
+ P G ++ I+ DG P +GE+ + P +F A +
Sbjct: 252 DGERRPGTVGLPLPGVEVRIVDEDGGE-PLAAGEVGEIQVRGPNVFSEYWNKPEATAEAF 310
Query: 570 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA-DDTMNLGGIKVSSVEI 628
D +F + GDV GYYR GR DD + GG KVS++EI
Sbjct: 311 -----TEDGWF------------KTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEI 353
Query: 629 ERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKL 688
E V E A IGVP PD G E + VVV + L +LR + ++KL
Sbjct: 354 EEALLEHPG-VAEVAVIGVPDPDWG-EAVVAVVVPEAG--AALTLAELR----AWAREKL 405
Query: 689 NPLFKV-SHVVPLPSLPRTATNKVMR 713
P +K+ V+ + LPR A KV +
Sbjct: 406 AP-YKIPKRVIVVDELPRNAMGKVQK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-14
Identities = 114/538 (21%), Positives = 192/538 (35%), Gaps = 106/538 (19%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
S+T EL +A L A G+ G +A+ + + VV LAI+ AG V + ++
Sbjct: 12 SLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAY 71
Query: 270 ASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRD 329
+ ++ L S A+ + T + L
Sbjct: 72 PAERLAFMLEDSGARVLLTDES--------------------------------LAPLAR 99
Query: 330 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNA--------T 381
D L LE ++ A + ++++SG+TG PK + + T
Sbjct: 100 ADQLPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNT 159
Query: 382 PFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSG--FA 439
+ + + D + L + + ++ +LLNG + L + L A
Sbjct: 160 NY---------IALDPDDRFLQLSPLSFDASTFEIWGALLNGGRLVLIDKETLLDPDRLA 210
Query: 440 KFVQDAKVTMLGVVPS----IVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495
+ + + VT+L + + +V + +R G+ + + R
Sbjct: 211 RLIAEQGVTVLWLTAALFNQLVDEDPEA-------LAGLRQLLVGGDVLSP----AHVRR 259
Query: 496 ALYKPVIEYCGGTEIGGGF-------------ITGSLLQAQSLAAFSTPAMGCKLFILGN 542
L C G + G+ IT A S+ P ++IL
Sbjct: 260 VL-----AACPGLRLINGYGPTENTTFSTCHVITRLDEAADSIP-IGRPIPNTTVYILDE 313
Query: 543 DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV---YFSGMPSRNGQILRRHGDVFE 599
+G P+P VP GEL + G L N ++ F P G+ L R GD+
Sbjct: 314 EGQPVPIGVP--GELY----VGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLAR 367
Query: 600 RTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 659
G GR D + + G ++ EIE+ V E AA+ V G ++L
Sbjct: 368 WRPDGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPG-VRE-AAVLVREDAAGDKRLVA 425
Query: 660 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVL 716
VV + D +LR + + ++L P + V + V L LP TA KV RR L
Sbjct: 426 YVVARG----ALDAAELR----AHLAERL-PAYMVPAAFVVLDELPLTANGKVDRRAL 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 3e-14
Identities = 88/387 (22%), Positives = 138/387 (35%), Gaps = 74/387 (19%)
Query: 362 ILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLL 421
I+++SG+TGEPK + ++ A ++++ + D + + G + +
Sbjct: 7 IIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLTAFR 66
Query: 422 NGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
G ++ L + K + ++T VP+ + + D+ S+R + G
Sbjct: 67 VGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNAG 126
Query: 482 EASNVDEYLWLMGRALYKPVIEYC--GGTEIGGGFITGSLLQAQSLAAFST---PAM--- 533
A L L R + + G TE A ST P
Sbjct: 127 GALPAKTILQL--RRAFPDAKLFSMYGLTE----------------AFRSTYLPPEELDR 168
Query: 534 ----------GCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL--LNANHYDVYFS 581
+L+++ DG G EL + GA+ N
Sbjct: 169 RPDSIGKAIPNVELWVVDEDGNRCAPGEVG--EL----VHRGANVMKGYWND-------- 214
Query: 582 GMPSRNGQILRRH----------GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERI 631
P + LR GD+ GY GR DD + G +VS EIE +
Sbjct: 215 --PEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEV 272
Query: 632 CNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPL 691
A V E A IGVP P G + + VVV D D +L +K L P
Sbjct: 273 ICAHPL-VAEAAVIGVPDPLLG-QAIVAVVVSADGE--SLDEKELLK----HCRKHL-PN 323
Query: 692 FKV-SHVVPLPSLPRTATNKVMRRVLR 717
+ V + +V + SLP+ A KV R LR
Sbjct: 324 YMVPAEIVFVDSLPKNANGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-14
Identities = 134/542 (24%), Positives = 210/542 (38%), Gaps = 82/542 (15%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ + EL A L ALG+ G +A+ M + A + G V +
Sbjct: 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWH 69
Query: 269 FASLEISARLRISKAKAIFTQ-DLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKL 327
F EI+ L S A+ + DL+ ++P V+ P I + S +
Sbjct: 70 FKPEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTP 129
Query: 328 RDGDISWLDFLERVRKLKENEFAAVEQP-VEAFTNILFSSGTTGEPKAIPWTNATPFKAA 386
G I W +L + + P V +++++SGTTG PK + TP +AA
Sbjct: 130 PAGAIDWEGWLA--------QQEPYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAA 181
Query: 387 ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASI-ALYNGSPL-------GSGF 438
A +R P + GP +Y S N + A G L
Sbjct: 182 A----AEQMRALIYGLKPGIRALLTGP--LYHSAPNAYGLRAGRLGGVLVLQPRFDPEEL 235
Query: 439 AKFVQDAKVTMLGVVPSI-VRTWKSTNCI-DGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496
+ ++ ++T + +VP++ +R K + YD SS+R D + RA
Sbjct: 236 LQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPAD-----VKRA 290
Query: 497 L---YKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFSTP------AMGCKLFILGNDGCP 546
+ + PVI EY G TE +G++ A S A S P A G +L + DG P
Sbjct: 291 MIEWWGPVIYEYYGSTE------SGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRP 344
Query: 547 IPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG--G 604
+PQ G I+ A + D + P + +I R G + TSG G
Sbjct: 345 LPQGEIGE--------IYSRI-----AGNPDFTYHNKPEKRAEI-DRGGFI---TSGDVG 387
Query: 605 YYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658
Y A G R D + GG+ + EIE + +AV V + A G+P + G E L
Sbjct: 388 YLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAV-PGVHDCAVFGIPDAEFG-EALM 445
Query: 659 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLR 717
VV + D +R + + +KV H+ + LPR + K+ +R LR
Sbjct: 446 AVV--EPQPGATLDEADIRAQLKARLAG-----YKVPKHIEIMAELPREDSGKIFKRRLR 498
Query: 718 KQ 719
Sbjct: 499 DP 500
|
Length = 509 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 6e-13
Identities = 91/368 (24%), Positives = 144/368 (39%), Gaps = 44/368 (11%)
Query: 362 ILFSSGTTGEPKAIPWTNATPFK----AAADAWC--HMDIRKADIVAWPTNLGWMMG-PW 414
I F+SGTTG PK F A DA+ + D+ L + G
Sbjct: 152 IGFTSGTTGLPKG-----TMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLGG 206
Query: 415 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 474
LV L GAS L K +Q+ + T+L P+ R + +D SS+
Sbjct: 207 LVLFPLRFGASAVLLE-QATPPLLLKAIQEHRATILFTAPTAYRAM--LIKVKAFDISSL 263
Query: 475 RCFGSTGE---ASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP 531
R S GE A ++ G +I+ G TE+ FI+ + A+ A P
Sbjct: 264 RKCVSAGETLPAKVWQDWYERTG----LKIIDGIGATEMLHIFISANEENAKP-GATGKP 318
Query: 532 AMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQIL 591
G + I+ + G +P+ G LA+ L+ Y R+G +
Sbjct: 319 VPGYEARIVDDQGNEVPRGEAGR--LAVRGPT---GCRYLDDERQQEYV-----RDGWNV 368
Query: 592 RRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVLETAAIGVPP 649
GD+F + GY+ R+DD + G +++ E+E A+ + +V E A IGV
Sbjct: 369 T--GDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVED---ALLTHPDVAECAVIGV-- 421
Query: 650 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATN 709
PD Q+ + +L R+ V+ + P + + +LP+T T
Sbjct: 422 PDEERGQIVCAHIVLRDGTKATELLAERL--QDFVKAVIAPYKYPREINFVDALPKTQTG 479
Query: 710 KVMRRVLR 717
K+ R LR
Sbjct: 480 KIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 2e-12
Identities = 89/384 (23%), Positives = 143/384 (37%), Gaps = 65/384 (16%)
Query: 362 ILFSSGTTGEPK--AIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 419
++++SG+TG PK + A + D V + + W ++
Sbjct: 98 VIYTSGSTGRPKGVMVEHRGLVNL--LAWLQERYGLTAGDRVLQFASFSFDASVWEIFPP 155
Query: 420 LLNGASIALYNGSPLGSG--FAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 477
LL+GA++ L L A+ +++ ++T+L +VPS++R + ++ S+R
Sbjct: 156 LLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL--LDALEPAALPSLRLV 213
Query: 478 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEI--GGG------FITGSLLQAQSLAAFS 529
GEA + L + E G + G +T + L S
Sbjct: 214 IVGGEA---------LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGS 264
Query: 530 ----TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL-------LNANHYDV 578
P ++++L D P+P VP GEL + GA L A +
Sbjct: 265 VPIGRPIANTRVYVLDEDLRPVPVGVP--GELYIG----GAGVARGYLNRPELTAERFVP 318
Query: 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSV-----EIERICN 633
G P G+ L R GD+ G GRADD +K+ EIE
Sbjct: 319 DPFGGP---GERLYRTGDLARWLPDGNLEFLGRADDQ-----VKIRGYRIELGEIEAALL 370
Query: 634 AVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFK 693
A V E + G +L VV D +LR + + ++L P +
Sbjct: 371 AHPG-VREAVVVAREDGAGEK-RLVAYVVPAAG--AELDAAELR----AFLAERL-PDYM 421
Query: 694 V-SHVVPLPSLPRTATNKVMRRVL 716
V S V L +LP T KV R+ L
Sbjct: 422 VPSAFVVLDALPLTPNGKVDRKAL 445
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-12
Identities = 125/529 (23%), Positives = 189/529 (35%), Gaps = 82/529 (15%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYI---VVSIA 266
++T +EL +A AL AL + + + I M N A++ A I ++ +
Sbjct: 68 TLTWRELDERSDALAAALQALPIGEPRVVGI---MCRNHRGFVEALLAANRIGADILLLN 124
Query: 267 DSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMK 326
SFA ++ + D +I ++ R + P A I
Sbjct: 125 TSFAGPALAEVVTREGV------DTVIYDEEFSATVDRALAD-CPQATRI---------- 167
Query: 327 LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTN---ILFSSGTTGEPKAIPWT---NA 380
++W D + A ++P IL +SGTTG PK +
Sbjct: 168 -----VAWTDEDHDLTVEVLIAAHAGQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGI 222
Query: 381 TPFKAAAD--AWCHMDIRKADIVAWPTNLGWMMGPW----LVYASLLNGASIALYNGSPL 434
KA D W + ++ P M W LV A+ L + P
Sbjct: 223 GTLKAILDRTPWRA---EEPTVIVAP-----MFHAWGFSQLVLAASLACTIVTRRRFDPE 274
Query: 435 GSGFAKFVQDAKVTMLGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWL 492
+ + + T L VVP + + Y S+R ++G D +
Sbjct: 275 AT--LDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAF 332
Query: 493 MGRALYKPVI--EYCGGTEIGGGFI-TGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQ 549
M + + VI Y TE G T + L+A A PA G ++ IL D +P
Sbjct: 333 MDQ--FGDVIYNNY-NATEAGMIATATPADLRAAPDTA-GRPAEGTEIRILDQDFREVPT 388
Query: 550 NVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAH 609
GE+ IF + T +D Y SG GDV G
Sbjct: 389 -----GEVGT---IFVRNDTQ-----FDGYTSGSTKDFHDGFMASGDVGYLDENGRLFVV 435
Query: 610 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYT 669
GR D+ + GG V +E+E+ V E A IGV G VV+ ++ T
Sbjct: 436 GRDDEMIVSGGENVYPIEVEKTLATHPD-VAEAAVIGVDDEQYGQRLAAFVVLKPGASAT 494
Query: 670 PPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLR 717
P L Q V+ L +KV +V L LPR AT K++RR L+
Sbjct: 495 PETLKQ-------HVRDNLAN-YKVPRDIVVLDELPRGATGKILRRELQ 535
|
Length = 537 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-12
Identities = 68/283 (24%), Positives = 114/283 (40%), Gaps = 39/283 (13%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+++T EL V +A L A G KG + + P ++ V++LA++ AG VV+ A+
Sbjct: 31 RALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAG-AVVTTANP 89
Query: 269 FASL-EISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVI--PAKGSSFSM 325
+ EI+ +++ S AK T L ++ +++ GS+
Sbjct: 90 LYTPAEIAKQVKDSGAKLAITTS---------ELAEKLASLALEPVVLLDSADDGSAAID 140
Query: 326 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT------N 379
L D V +K+++ AA + +SSGTTG K + T N
Sbjct: 141 DLLFADEP---EPPVVV-IKQDDVAA----------LPYSSGTTGRSKGVMLTHRNLIAN 186
Query: 380 ATPFKAAADAWCHMDIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPLGSGF 438
A + + P + + G ++ A L GA++ + L F
Sbjct: 187 VAQLVAGEGPNFDREDVT--LCVLP--MFHIYGLTVILLALLRLGATVVVMPRFDLEK-F 241
Query: 439 AKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
++ KVT L VVP IV +D YD SS++ GS
Sbjct: 242 LAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGA 284
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 7e-12
Identities = 92/384 (23%), Positives = 135/384 (35%), Gaps = 69/384 (17%)
Query: 361 NILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADI--VAWP------TNLGWMMG 412
I ++SGTTG PK T+ + + + D V P LG +
Sbjct: 6 LIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGVL-- 63
Query: 413 PWLVYASLLNGASIALYNGSPLGSGFAKF--------VQDAKVTMLGVVPSIVRTWKSTN 464
ASL GA++ L KF ++ ++T L VP++
Sbjct: 64 -----ASLTAGATLVL---------MEKFDPGAALRLIERERITALHGVPTMFIALLEHP 109
Query: 465 CIDGYDWSSIRCFGSTGEA---SNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ 521
D +D SS+R S G V A + Y G TE G S
Sbjct: 110 DFDKFDLSSLRTGISGGAPVPPELVRRIREEFPMA--EITTGY-GMTETSGVGTQTSGDD 166
Query: 522 AQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY 579
+ P G ++ I+ DG +P G E+ + G S Y
Sbjct: 167 PYEDRPGTVGRPLPGVEVKIVDPDGGEVPPGEVG--EICVR----GYSVMK-------GY 213
Query: 580 FSGMPSRNGQILRR----H-GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 634
+ P + + H GD+ GY R GR D + GG + EIE
Sbjct: 214 Y-NDPEATAEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLT 272
Query: 635 VDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV 694
+ V E A +GVP G E + VV K +L + + +L FKV
Sbjct: 273 HPA-VAEAAVVGVPDERLG-EVVAAFVVLKPG--ATLTEEELI----AFCRGRLAR-FKV 323
Query: 695 -SHVVPLPSLPRTATNKVMRRVLR 717
+V + LPRTA+ K+ + LR
Sbjct: 324 PRYVRFVDELPRTASGKIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 1e-11
Identities = 120/558 (21%), Positives = 209/558 (37%), Gaps = 76/558 (13%)
Query: 187 SKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV 246
+++ + I +R CD ++ +EL AEV +A L A + +GS + + ++
Sbjct: 24 ARQQPEAIALRRCDG------TSALRYRELVAEVGGLAADLRAQSVSRGSRVLV---ISD 74
Query: 247 NSVVIYLAIVLA----GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY 302
N YL+ VLA G I V + I +I+ A ++P
Sbjct: 75 NGPETYLS-VLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVP-- 131
Query: 303 SRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNI 362
P+ V A + S D L N E P+ +
Sbjct: 132 --EALHSIPVIAVDIAAVTRESEHSLDAA-----------SLAGNADQGSEDPLA----M 174
Query: 363 LFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAW-----------PTNLGWMM 411
+F+SGTTGEPKA+ N T F DI + + + W P +
Sbjct: 175 IFTSGTTGEPKAVLLANRTFFAVP-------DILQKEGLNWVTWVVGETTYSPLPATHIG 227
Query: 412 GPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDW 471
G W + L++G G + + + V +VP+++ S
Sbjct: 228 GLWWILTCLMHGGLCV--TGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATV 285
Query: 472 SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFI-----TGSLLQAQSLA 526
S+R G G + + ++ + + G +E G + GS+++ ++
Sbjct: 286 PSLRLVGYGGSRAIAADVRFIEATGVR--TAQVYGLSETGCTALCLPTDDGSIVKIEA-G 342
Query: 527 AFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSR 586
A P G +++ DG PG G A FG AN + P R
Sbjct: 343 AVGRPYPGVDVYLAATDGIG--PTAPGAGPSA----SFGTLWIKSPANMLGYW--NNPER 394
Query: 587 NGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLET 642
++L GD+ ER G++ GR+ + + GG+ ++ E++RI V S V E
Sbjct: 395 TAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGV-SGVREA 453
Query: 643 AAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPS 702
A +P + G L + V + L+ + + +++ P+ + S +V +
Sbjct: 454 ACYEIPDEEFG--ALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTD 511
Query: 703 LPRTATNKVMRRVLRKQL 720
+PRT + KVMR L
Sbjct: 512 IPRTQSGKVMRASLAAAA 529
|
Length = 540 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 3e-11
Identities = 123/534 (23%), Positives = 196/534 (36%), Gaps = 58/534 (10%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
K +T +V A L LG++KG +AI +P +V+ Y +LAG IVV
Sbjct: 48 KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPL 107
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIP--------LYSRVID-AQAPLAIVIP-- 317
+ E+ +L S AK I DL+ ++ + +R+ D P ++ P
Sbjct: 108 YTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167
Query: 318 -AKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIP 376
K S+ +K+ + + + V K P + ++ GTTG PK +
Sbjct: 168 QKKQSNLVVKVSESET--IHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVM 225
Query: 377 WT--NATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY-ASLLNGASIALYNGSP 433
T N W + ++V + G V S++ G + L
Sbjct: 226 LTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFD 285
Query: 434 LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR-CF-GSTGEASNVDEYLW 491
+ F + ++ KVT+ P+I ++ + YD SSIR C GS V E
Sbjct: 286 MKMVF-EAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKF- 343
Query: 492 LMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNV 551
T GG + G L S S + + G+ G P P
Sbjct: 344 ---------------ETVTGGKLVEGYGLTESSPVTHSNFLWEKR--VPGSIGVPWPDTE 386
Query: 552 PGMGEL----ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSG 603
+ L AL P G ++ + P +L+ GDV
Sbjct: 387 AMIMSLETGEALPPGEIG--EIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDED 444
Query: 604 GYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVF 663
G++ R D + G V E+E + + V E IGVP P G VV+
Sbjct: 445 GFFYVKDRKKDMIVASGFNVYPREVEEVLYEHE-KVQEVVTIGVPDPYRGETVKAFVVLK 503
Query: 664 KDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPS-LPRTATNKVMRRVL 716
+ + + +LNQ + +A +KV V LP+T K++RRVL
Sbjct: 504 EGTECSEEELNQFARKYLAA--------YKVPKVYEFRDELPKTTVGKILRRVL 549
|
Length = 563 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 131/568 (23%), Positives = 201/568 (35%), Gaps = 141/568 (24%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ +T EL A +A+ L ALGL +G +AI + N +Y A +G I
Sbjct: 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWH 69
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
+ EI+ + S AK + + D A LA +PA +
Sbjct: 70 LTAAEIAYIVDDSGAKVLIVSA-------------ALADTAAELAAELPAGVPLLLVV-- 114
Query: 329 DGDIS-WLDFLERVRKLKENEFAAVEQPVEAFTN------ILFSSGTTGEPKAIPWTNAT 381
G + + + E AA QP + +L+SSGTTG PK I
Sbjct: 115 AGPVPGFRSY--------EEALAA--QPDTPIADETAGADMLYSSGTTGRPKGI------ 158
Query: 382 PFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIAL-----YNGSPLGS 436
K D P + ++G + S+ L Y+ +PL
Sbjct: 159 --KRPLPG--------LDPDEAPGMMLALLGFGM----YGGPDSVYLSPAPLYHTAPL-- 202
Query: 437 GFAKFVQ------------DA----------KVTMLGVVPSI-VRTWKSTNCI-DGYDWS 472
F DA +VT +VP++ VR K + YD S
Sbjct: 203 RFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVS 262
Query: 473 SIRCFGSTGEASNVDEYLWLMGRAL---YKPVI-EYCGGTEIGGG-FITGSLLQAQSLAA 527
S+R V+ + RA+ + P+I EY +E GG IT LA
Sbjct: 263 SLRVAIHAAAPCPVE-----VKRAMIDWWGPIIHEYYASSEGGGVTVITS----EDWLAH 313
Query: 528 FST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP- 584
+ A+ ++ IL DG +P G ++ H D P
Sbjct: 314 PGSVGKAVLGEVRILDEDGNELPPGEIG--------TVYFEMDGYPFEYHND------PE 359
Query: 585 ----SRNGQILRRHGDVFERTSGGYYRAHG------RADDTMNLGGIKVSSVEIERICNA 634
+RN GDV GY G R D + GG+ + EIE N
Sbjct: 360 KTAAARNPHGWVTVGDV------GYLDEDGYLYLTDRKSDMIISGGVNIYPQEIE---NL 410
Query: 635 VDSN--VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 692
+ ++ V + A GVP + G E++ VV D L +++ ++ +L +
Sbjct: 411 LVTHPKVADVAVFGVPDEEMG-ERVKAVVQPADGADAGDALAAELIAW---LRGRLAH-Y 465
Query: 693 KVSHVVPL-PSLPRTATNKVMRRVLRKQ 719
K + LPRT T K+ +R LR +
Sbjct: 466 KCPRSIDFEDELPRTPTGKLYKRRLRDR 493
|
Length = 502 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 4e-11
Identities = 87/430 (20%), Positives = 150/430 (34%), Gaps = 54/430 (12%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
+T EL A +A L +LG+ G +AI ++ VV LA++ AG V + +
Sbjct: 252 QLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLY 311
Query: 270 ASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRD 329
+ ++ L S+ + TQ + D +P
Sbjct: 312 PAERLAYILEDSRPTLLLTQAHLRVDDVGLPG---------------------------- 343
Query: 330 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK--AIPWTNATPFKAAA 387
L + + ++ + + +A I+++SG+TG+PK I A
Sbjct: 344 -----LALDDALSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDA 398
Query: 388 DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSG--FAKFVQDA 445
A +D D V +L + + ++ +LL GA + L + ++
Sbjct: 399 GARFGLDAD--DRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQ 456
Query: 446 KVTMLGVVPSIVR--TWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIE 503
+T+L +VP ++R + +R S GEA + L+ A +
Sbjct: 457 GITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLL 516
Query: 504 YCGGTEIGGGFITGSLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNVPGMGELALSP 561
G + A+ + P +L+IL P+P VP GEL
Sbjct: 517 NLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVP--GEL---- 570
Query: 562 LIFGASSTLLNANHYDVYFSGMPSR-NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGG 620
I G L Y R L R GD+ + G GR D + + G
Sbjct: 571 YIAGLGLALG----YLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRG 626
Query: 621 IKVSSVEIER 630
++ EIE
Sbjct: 627 FRIELGEIEA 636
|
Length = 642 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 4e-11
Identities = 100/535 (18%), Positives = 180/535 (33%), Gaps = 127/535 (23%)
Query: 234 KGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLII 293
+G I I +P +V + LA++LAG + V + + + + + + K + T +
Sbjct: 30 EGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVITSRAFL 89
Query: 294 RGDKSIPLYSRVIDAQAPLAIVI---PAKGSSFSMKLRDGDISWL-------DFLERVRK 343
+K L + ++ + + D ++L +
Sbjct: 90 --EK---LKLEGLVVLLEGVRIVYLEDLRAK---ISKADKLKAFLAAKLPPALLRLFLAG 141
Query: 344 LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV-- 401
K ++ A ILF+SG+ G PK + ++ +D+ D++
Sbjct: 142 AKPDDPAV----------ILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLG 191
Query: 402 AWP-------TNLGWMMGPWLVYASLLNGASIALYNGSPL-GSGFAKFVQDAKVTMLGVV 453
A P T + LL G + Y +PL A+ ++D K T+L
Sbjct: 192 ALPLFHAFGLTVTLLLP--------LLTGLRVVYY-PNPLDAKKIAELIRDYKATILCGT 242
Query: 454 PS----IVRTWKSTNCIDGYDWSSIR-CFGSTGEASNVDEYLWLMGRALY-KPVIEYCGG 507
P+ R D+SS+R G A + E + + ++E G
Sbjct: 243 PTFLRGYARNAHP------EDFSSLRLVV--AG-AEKLPEATRELFEEKFGIRILEGYGA 293
Query: 508 TEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQ------NVPGMGELAL-- 559
TE + + +TP MG K G G P+P + EL +
Sbjct: 294 TE------------CSPVISVNTP-MGNK---PGTVGRPLPGIEVRIVSPETHEELPIGE 337
Query: 560 -------SPLIF---------GASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG 603
P + + +L YD G I + D
Sbjct: 338 GGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYD---------TGDIGKIDED------- 381
Query: 604 GYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVF 663
G+ GR +GG VS +E + + + AA+ VP G E+ IV++
Sbjct: 382 GFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVPDEKKG-EK--IVLLT 438
Query: 664 KDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
+ P +LN + + L L ++ + +P + K R L+K
Sbjct: 439 TTEDLDPEELNAI------LREAGLPNLAVPRKILHVDEIPLLGSGKTDYRGLKK 487
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 5e-11
Identities = 88/385 (22%), Positives = 144/385 (37%), Gaps = 41/385 (10%)
Query: 362 ILFSSGTTGEPK--AIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 419
++++SG+TG+PK AI + + D + + + +G ++ +
Sbjct: 661 VIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAAD--DSMLMVSTFAFDLGVTELFGA 718
Query: 420 LLNGASIAL--YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 477
L +GA++ L + + FA + D VT+L +VPS ++ + + R
Sbjct: 719 LASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALP--RPQRAL 776
Query: 478 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTE--IGGGFITGSLLQAQSLAAF-STPAMG 534
GEA VD + +I + G TE +G S + P
Sbjct: 777 VCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQPLAN 836
Query: 535 CKLFILGNDGCPIPQNVPGMGELALSPLIFGAS-------STLLNANHYDVYFSGMP-SR 586
L+IL + P+P V +GEL I GA L A F P
Sbjct: 837 LGLYILDHYLNPVP--VGVVGEL----YIGGAGLARGYHRRPALTAE----RFVPDPFGA 886
Query: 587 NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIG 646
+G L R GD+ + G GR D + + G ++ EIE A V E +
Sbjct: 887 DGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPG-VREAVVLA 945
Query: 647 VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN---PLFKV-SHVVPLPS 702
P G QL +V + ++ +L P + V +H++ L S
Sbjct: 946 QPGDAG--LQLVAYLV-----PAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDS 998
Query: 703 LPRTATNKVMRRVLRKQLAQLDQNS 727
LP T K+ R+ L K A Q +
Sbjct: 999 LPLTPNGKLDRKALPKPDASAVQAT 1023
|
Length = 3956 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 8e-11
Identities = 121/545 (22%), Positives = 206/545 (37%), Gaps = 69/545 (12%)
Query: 203 DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262
G + T +EL A V VA L LG+ +G ++ +P V+YLA G ++
Sbjct: 48 LGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVL 107
Query: 263 VSIADSFASLEISARLRISKAKAIFTQDLII----RGDKSIPLYSRVIDAQAPLAIVIPA 318
+ F E+S L+ +++K L++ RG + R+ L V+
Sbjct: 108 NPLMPIFRERELSFMLKHAESKV-----LVVPKTFRGFDHAAMARRLRPELPALRHVVVV 162
Query: 319 KGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPV----EAFTNILFSSGTTGEPKA 374
G DG S+ L +E + A+ + + T ++++SGTTGEPK
Sbjct: 163 GG--------DGADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKG 214
Query: 375 IPWTNATPFKAAADAWCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYN 430
+ T T + + D++ + + G+M G + ++ GA+ A+
Sbjct: 215 VMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMM---PVMLGAT-AVLQ 270
Query: 431 GSPLGSGFAKFVQDAKVT-MLGVVP---SIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV 486
+ A+ ++ VT + P + R K G SS+R F G A
Sbjct: 271 DIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE----SGRPVSSLRTFLCAG-APIP 325
Query: 487 DEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST---PAMGCKLFILGND 543
+ AL ++ G TE G +T + L A +T P G ++ ++ D
Sbjct: 326 GALVERARAALGAKIVSAWGMTE--NGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDAD 383
Query: 544 GCPIPQNVPGMGELALSPLIFG--ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERT 601
G P+P G FG LN D +F GD+
Sbjct: 384 GAPLPAGQIGR-LQVRGCSNFGGYLKRPQLNGTDADGWFDT------------GDLARID 430
Query: 602 SGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQLTI 659
+ GY R GR+ D + GG + VEIE + + + + A + P G
Sbjct: 431 ADGYIRISGRSKDVIIRGGENIPVVEIE---ALLYRHPAIAQVAIVAYPDERLGERACAF 487
Query: 660 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 719
VV + ++ + + A Q + +V +LPRT + K+ + LR+
Sbjct: 488 VVPRPGQSLDFEEMVEFLKAQKVAKQ------YIPERLVVRDALPRTPSGKIQKFRLREM 541
Query: 720 LAQLD 724
L D
Sbjct: 542 LRGED 546
|
Length = 547 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 119/544 (21%), Positives = 197/544 (36%), Gaps = 87/544 (15%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
S T L +A L A G++ G +A +P +IYLA + G + V + S+
Sbjct: 49 SYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSW 108
Query: 270 ASLEISARLRISKAKAIFT---------QDLIIRGDKSIPLYSRV--IDAQAPLAIVIPA 318
E+ L +AK F DLI+ +P ++ +D AP
Sbjct: 109 REAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAP------- 161
Query: 319 KGSSFSMKLRDGDISWLDFLERVRKLKE------NEFAAVEQPVEAFTNILFSSGTTGEP 372
SS S+ + L +E AA +LF+SGT G P
Sbjct: 162 ATSSLSLS---------QIIADYEPLTTAITTHGDELAA----------VLFTSGTEGLP 202
Query: 373 KAIPWTNATPFKAAADAWC-HMDIRKADIVAWPTNLGWMMGPW--LVYASLLNGASIALY 429
K + T+ A+ A+C +++ D+ P LG G + L+ S+ L
Sbjct: 203 KGVMLTHNNIL-ASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD 261
Query: 430 NGSPLGSGFAKFVQDAKVT-MLGVVPSIVRTWKSTNCI--DGYDWSSIRCF--GSTGEAS 484
+P ++ + T MLG P I + N + D S++R F G T
Sbjct: 262 IFTP--DACLALLEQQRCTCMLGATPFI---YDLLNLLEKQPADLSALRFFLCGGTTIPK 316
Query: 485 NVDEYLWLMGRALYKPVIEYCGGTE-IGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND 543
V G L + G TE + ++ + A G ++ ++
Sbjct: 317 KVARECQQRGIKL----LSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEA 372
Query: 544 GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG-----DVF 598
+P G E + P +F + + P + L G D+
Sbjct: 373 RKTLPPGCEGE-EASRGPNVF-------------MGYLDEPELTARALDEEGWYYSGDLC 418
Query: 599 ERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658
GY + GR D + GG +SS E+E I + + + +P G E+
Sbjct: 419 RMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQH-PKIHDACVVAMPDERLG-ERSC 476
Query: 659 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
VV K +++ + V K P H+V + LPRTA+ K+ + +LRK
Sbjct: 477 AYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYP----EHIVVIDKLPRTASGKIQKFLLRK 532
Query: 719 QLAQ 722
+ +
Sbjct: 533 DIMR 536
|
Length = 547 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 1e-10
Identities = 102/541 (18%), Positives = 181/541 (33%), Gaps = 58/541 (10%)
Query: 189 RSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS 248
R ++ V R D + ++ EL +A+ L G+ + + + ++
Sbjct: 3061 RLFEEQVERTPDAVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEM 3120
Query: 249 VVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA 308
VV LAI+ AG V + + ++ L S A+ + +Q
Sbjct: 3121 VVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQS------------------ 3162
Query: 309 QAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGT 368
++L + L+R + A+ E ++++SG+
Sbjct: 3163 ---------------HLRLPLAQGVQVLDLDRGDENYAEANPAIRTMPENLAYVIYTSGS 3207
Query: 369 TGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIAL 428
TG+PK + ++ + D V T + + ++ L++GA + L
Sbjct: 3208 TGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVL 3267
Query: 429 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTW-KSTNCIDGYDWSSIRCFGSTGEASNVD 487
G A V+ + V+ + D + +S++ GEA D
Sbjct: 3268 -AGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPAD 3326
Query: 488 EYLWLMGRALYK-PVIEYCGGTEIGGGFITGSLLQAQSLAAF-STPAMGCKLFILGNDGC 545
L + P+ G TE ++ A P +IL
Sbjct: 3327 ----LQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLE 3382
Query: 546 PIPQNVPGMGELALSPLIFG-ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGG 604
P+P G L L G + L A F P G+ L R GD+ + G
Sbjct: 3383 PVPVGALGELYLGGEGLARGYHNRPGLTAER----FVPDPFVPGERLYRTGDLARYRADG 3438
Query: 605 YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFK 664
GR D + + G ++ EIE V E + V QL VV +
Sbjct: 3439 VIEYIGRVDHQVKIRGFRIELGEIEA-RLLEHPWVREAVVLAV-----DGRQLVAYVVPE 3492
Query: 665 DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724
D LR + + ++ L +H++ L +P T K+ R+ L + A L
Sbjct: 3493 DEA------GDLREALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKALPRPDAALL 3546
Query: 725 Q 725
Q
Sbjct: 3547 Q 3547
|
Length = 5163 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 91/391 (23%), Positives = 156/391 (39%), Gaps = 63/391 (16%)
Query: 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD--AWCHMDIRKADIVAWP-------- 404
P E + ILF+SGT+G+PK + + + A + +D + + P
Sbjct: 133 PPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLI 192
Query: 405 TNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFV-QDAKVTMLGVVPSIVRTWKST 463
T+ V L G SI + NG + +T VP + + +++
Sbjct: 193 TS---------VRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQ 243
Query: 464 NCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGF---ITGSLL 520
D + + G ++ L + + P+++ G +E G F + ++
Sbjct: 244 PGFDAAALRHLTALFTGGAPHAAEDILGWLDDGI--PMVDGFGMSEAGTVFGMSVDCDVI 301
Query: 521 QAQSLAA-FSTPAMGCKLFILGNDGCPIPQNVPGMGELALS-PLIF-------GASSTLL 571
+A++ AA TP + + ++ + G P VPG EL L P + A++
Sbjct: 302 RAKAGAAGIPTPTVQTR--VVDDQGNDCPAGVPG--ELLLRGPNLSPGYWRRPQATARAF 357
Query: 572 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERI 631
D +F R G I RR D G++ R D GG V EIE +
Sbjct: 358 TG---DGWF-----RTGDIARRDAD-------GFFWVVDRKKDMFISGGENVYPAEIEAV 402
Query: 632 CNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPL 691
A + E A +G+ G E + +V D P DL ++R ++ + K
Sbjct: 403 L-ADHPGIRECAVVGMADAQWG-EVGYLAIVPADG--APLDLERIRSHLSTRLAK----- 453
Query: 692 FKV-SHVVPLPSLPRTATNKVMRRVLRKQLA 721
+KV H+ + +LPRTA+ K+ + LR LA
Sbjct: 454 YKVPKHLRLVDALPRTASGKLQKARLRDALA 484
|
Length = 488 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 6e-10
Identities = 133/565 (23%), Positives = 214/565 (37%), Gaps = 76/565 (13%)
Query: 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGS 236
N A + + + D + + WCD D G K T +L+ A ALG+ KG
Sbjct: 17 NFAYDVVDAYADEEPDKLALIWCD--DDGEE-KIFTFGDLKDYSNKAANFFKALGIGKGD 73
Query: 237 AIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGD 296
+ + + LA+ G I + + +I R+ + K I + G+
Sbjct: 74 TVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMI-----VCIGE 128
Query: 297 KSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPV 356
+P ID AP P + +G W+DF K EN E+P
Sbjct: 129 DGVP---EHIDEAAP-ECGSPTLLVLVGDPVPEG---WIDF----DKEIENASPDFERPT 177
Query: 357 --EAFTN-----ILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGW 409
+A N + F+SGTTG PK + + P A ++++ + + GW
Sbjct: 178 GNDATCNDDILLVYFTSGTTGMPKMVEHDHTYPLGHIVTAKYWQNVKEGGLHLTVADTGW 237
Query: 410 MMGPW-LVYASLLNGASIALYNGSPLGSGFAKFVQDA--------KVTMLGVVPSIVRTW 460
W +Y + GA++ +Y+ + KF VT P+I R
Sbjct: 238 GKAVWGKLYGQWIAGAAVFVYD-------YDKFDPKNLLEKIEKYGVTTFCAPPTIYRFL 290
Query: 461 KSTNCIDGYDWSSIRCFGSTGEASN---VDEYLWLMGRALYKPVIEYCGGTEIGGGFITG 517
+ + YD SS+R + GE N + + G L E G TE T
Sbjct: 291 IKED-LSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGIKLM----EGFGQTETTLTIATF 345
Query: 518 SLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYD 577
++ + + P+ G + I+ DG V GE+ + G L + D
Sbjct: 346 PWMEPKP-GSMGKPSPGYDIDIIDPDGKSCE--VGEEGEIVIR-TSDGKPLGLFMGYYRD 401
Query: 578 VYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN 633
P R ++ GD GY GRADD + G ++ E+E +
Sbjct: 402 ------PERTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVE---S 452
Query: 634 AVDSN--VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPL 691
A+ + VLE A GVP P G +V+ K Y P + +L+ V KK+
Sbjct: 453 ALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKG--YEPSE--ELKKELQDHV-KKVTAP 507
Query: 692 FKVSHVVP-LPSLPRTATNKVMRRV 715
+K ++ + LP+T + K+ RRV
Sbjct: 508 YKYPRIIEFVDELPKTISGKI-RRV 531
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 114/525 (21%), Positives = 184/525 (35%), Gaps = 117/525 (22%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
S+T EL +A L A G+ S + + + + + VV LA++ AG V + ++
Sbjct: 24 SLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAYVPLDPAY 83
Query: 270 ASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRD 329
RL I+ DA A L + P
Sbjct: 84 PP----ERLA-----------YILE------------DAGARLVLTDPD----------- 105
Query: 330 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK--AIPWTNATPFKAAA 387
D+++ ++++SG+TG PK AI NA A
Sbjct: 106 -DLAY---------------------------VIYTSGSTGRPKGVAIEHRNAAALLQWA 137
Query: 388 DAWCHMDIRKADIVAWPTNLGW----MMGPWLVYASLLNGASIALYNGSP-LGSGFAKFV 442
A + + A + P G + L + + L AK
Sbjct: 138 AAVFSAEELAGVLAATSICFDLSVFEIFVPLST------GGRVVLADNALALPDLPAK-- 189
Query: 443 QDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVI 502
A+VT++ VPS R + + SS+R GE + L + V
Sbjct: 190 --AEVTLINTVPSAARELLRHDALP----SSVRTVNLAGEPLPQELVQRLYALPQVERVY 243
Query: 503 EYCGGTEIGGGFITGSLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNVPGMGELALS 560
G +E + T + ++ + S P G + ++L P+P VPG EL +
Sbjct: 244 NLYGPSE-DTTYSTYAEVEPGASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPG--ELYIG 300
Query: 561 PLIFGASSTL-------LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRAD 613
GA L A + + G+ L R GD+ R + G GR D
Sbjct: 301 ----GAGVARGYLGRPELTAERF--LPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRID 354
Query: 614 DTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE-QLTIVVVFKDSNYTPPD 672
D + + G ++ EIE ++ V E A+ V D + QL +V D
Sbjct: 355 DQVKVRGFRIELGEIEAALRSIPG-VAE--AVVVAIGDAAGDRQLVAYIVADPG--AAID 409
Query: 673 LNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVL 716
+ LR + + +L P + V S V L +LP T K+ R+ L
Sbjct: 410 IEDLR----ARLATRL-PAYMVPSRFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 2e-09
Identities = 123/547 (22%), Positives = 193/547 (35%), Gaps = 92/547 (16%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+T EL +A+AL A G+ + I M + +V LA++ AG V + +
Sbjct: 4577 LTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYP 4636
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDG 330
++ + S A + TQ S ++ + P IP +S ++ RD
Sbjct: 4637 RERLAYMMEDSGAALLLTQ-------------SHLLQ-RLP----IPDGLASLALD-RDE 4677
Query: 331 DISWLDFLER--VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKA-----------IPW 377
D W F +L + A V +++SG+TG PK +
Sbjct: 4678 D--WEGFPAHDPAVRLHPDNLAYV----------IYTSGSTGRPKGVAVSHGSLVNHLHA 4725
Query: 378 TNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN-GSPLGS 436
T D D G L+NGAS+ + +
Sbjct: 4726 TGERYELTPDDRVLQFMSFSFDGSHE----GLYHP-------LINGASVVIRDDSLWDPE 4774
Query: 437 GFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR--CFGSTGEASNVDEYLWLMG 494
+ + +VT+L P ++ DG + S+R CFG GEA Y
Sbjct: 4775 RLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPSLRVYCFG--GEAVAQASYDLAWR 4831
Query: 495 RALYKPVIEYCGGTEIGGGFITGSLLQAQ-------SLAAFSTPAMGCKLFILGNDGCPI 547
+ G TE +T L +A+ + TP ++L P+
Sbjct: 4832 ALKPVYLFNGYGPTETT---VTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPL 4888
Query: 548 PQNVPGMGELALSPLIFGA---SSTLLNANHYDVYFSGMPS---RNGQILRRHGDVFERT 601
P V GEL L L A + +P G L R GD+
Sbjct: 4889 P--VGVAGELYLGGEGVARGYLERPALTAERF------VPDPFGAPGGRLYRTGDLARYR 4940
Query: 602 SGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVV 661
+ G GR D + + G ++ EIE V E I G +QL V
Sbjct: 4941 ADGVIDYLGRVDHQVKIRGFRIELGEIE-ARLREHPAVREAVVIAQEGAVG--KQLVGYV 4997
Query: 662 VFKDSNYTPPDLNQ--LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRK 718
V +D D Q LR +A++++L P + V +H+V L +P T K+ R+ L +
Sbjct: 4998 VPQDPALADADEAQAELRDELKAALRERL-PEYMVPAHLVFLARMPLTPNGKLDRKALPQ 5056
Query: 719 QLAQLDQ 725
A L Q
Sbjct: 5057 PDASLLQ 5063
|
Length = 5163 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-09
Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 19/176 (10%)
Query: 207 PVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIA 266
+++T +EL V +A L +LG+ G +AI + LAI+ G + V I
Sbjct: 42 GWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIY 101
Query: 267 DSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMK 326
+ +++ L S++K IF ++ L V+ V+ ++
Sbjct: 102 STSTPEQLAYILNESESKVIFVENQE--------LLDLVLPVLEDCPKVVDLIVIIDLVR 153
Query: 327 LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTN---------ILFSSGTTGEPK 373
+ + LE + F +E I+++SGTTG PK
Sbjct: 154 EAVEAKALV--LEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPK 207
|
Length = 613 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 107/515 (20%), Positives = 187/515 (36%), Gaps = 89/515 (17%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS 271
T ++L E +A AL A G+ GS +A+ ++ V++ A +L G + +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 272 LEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGD 331
E + +L + + T L+ D R I+A + A SF+M
Sbjct: 61 NERTNQLEDLDVQLLLTDSLLEEKDFQADSLDR-IEAAGRYETSLSA---SFNM------ 110
Query: 332 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC 391
+Q ++F+SGTTG+PKA+P T + +A +
Sbjct: 111 ---------------------DQIA----TLMFTSGTTGKPKAVPHTFRNHYASAVGSKE 145
Query: 392 HMDIRKAD--IVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQD---AK 446
++ + D +++ P L + G +++ L+ GA++ + F + ++ +
Sbjct: 146 NLGFTEDDNWLLSLP--LYHISGLSILFRWLIEGATLR------IVDKFNQLLEMIANER 197
Query: 447 VTMLGVVPSIV-RTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYC 505
VT + +VP+ + R ++R G A L + P+
Sbjct: 198 VTHISLVPTQLNRLLDEGG-----HNENLRKILLGGSAIPAP--LIEEAQQYGLPIYLSY 250
Query: 506 GGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFG 565
G TE T + + P G ++ I D N G GE I
Sbjct: 251 GMTETCSQVTTATPEMLHARPDVGRPLAGREIKI-KVD------NKEGHGE------IMV 297
Query: 566 ASSTLLNANHYDVYF---SGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIK 622
+ L+ Y P+ Q GD+ E G+ GR DD + GG
Sbjct: 298 KGANLMKG-----YLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGEN 352
Query: 623 VSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNS 682
+ EIE + + E A+ VP PD Q+ + + +S +L
Sbjct: 353 IYPEEIETVLYQH-PGIQE--AVVVPKPDAEWGQVPVAYIVSES---DISQAKLIAYLTE 406
Query: 683 AVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVL 716
+ K +KV L LP A+ K++R L
Sbjct: 407 KLAK-----YKVPIAFEKLDELPYNASGKILRNQL 436
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD+ + GY GR DD + GG + EIE + + V E A +GVP + G
Sbjct: 293 GDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPA-VEEAAVVGVPDDEWG- 350
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMR 713
Q V F N P + +L+ + + KL +K PLP LPR A+ K+ R
Sbjct: 351 -QR--PVAFVVPNDDPVSVEELQ----AFLADKLAK-YKRPKRWYPLPELPRNASGKIDR 402
Query: 714 RVLRK 718
LR+
Sbjct: 403 AALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 108/452 (23%), Positives = 168/452 (37%), Gaps = 86/452 (19%)
Query: 298 SIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVE 357
L+ ++ A A+VIPA LRD R + K A E +
Sbjct: 35 VPELWEAMLAAIKLGAVVIPATTLLTPADLRD----------RFSRGKPKAIVADETRAD 84
Query: 358 AFTNILFSSGTTGEPKAIPWTNAT-PFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-L 415
+ F+SGTTG PK + T+ + P + + ++ DI ++ GW W
Sbjct: 85 DPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTM-YWIGLQPGDIHLNISSPGWAKHAWSS 143
Query: 416 VYASLLNGASIALYNGSPLGSGFA-KFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 474
+A GA++ N + ++ VT P++ R + + + YD +
Sbjct: 144 FFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQQD-LAQYD-VRL 201
Query: 475 RCFGSTGEASN------VDEYLWLMGRALYKPVIEYCGGTEI--------GGGFITGSLL 520
R S GE N V + L R Y G TE G GS
Sbjct: 202 REAVSAGEPLNPEVIERVKKAWGLTIRDGY-------GQTETTAMIGNSPGQKVKPGS-- 252
Query: 521 QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY- 579
P G ++ +L ++G IP GE+AL L +
Sbjct: 253 -------MGRPLPGYRVVLLDDEGKEIPVTE---GEIALD----------LGDRPIGLML 292
Query: 580 -FSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 634
+ G P + R R GD R GY GRADD ++S E+E
Sbjct: 293 GYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVE----- 347
Query: 635 VDSNVLETAAIG----VPPPDGGPEQLTIV---VVFKDSNYTP-PDLNQLRMSFNSAVQK 686
S +LE A+ VP PD P +L + +V K Y P + L + + V++
Sbjct: 348 --SALLEHPAVAEAAVVPSPD--PIRLAVPKAYIVLK-PGYEPSRE---LALELFAHVRE 399
Query: 687 KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
+L P ++ + + LP+T + K+ R LRK
Sbjct: 400 RLAPYKRIRRIEFVGELPKTISGKIRRVELRK 431
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD+ R + GY GR D M + G + + IERI + E A VP P G
Sbjct: 386 GDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYP-DATEVAVYAVPDPVVGD 444
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714
+ + +V+ + + P + F +A Q L P S+V LPRTAT KV++R
Sbjct: 445 QVMAALVLAPGAKFDPDAFAE----FLAA-QPDLGPKQWPSYVRVCAELPRTATFKVLKR 499
Query: 715 VLRKQ 719
L +
Sbjct: 500 QLSAE 504
|
Length = 529 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-08
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 602 SG--GYYRAHG------RADDTMNLGGIKVSSVEIERICNAV--DSNVLETAAIGVPPPD 651
SG G G R D + GG V+S E+E A+ V E A IG+P P
Sbjct: 399 SGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVE---EALYTHPAVAEVAVIGLPDPK 455
Query: 652 GGPEQLTIVVVFKDSN-YTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATN 709
E +T VVV K T +L ++ + +L FKV V+ + LPR +
Sbjct: 456 WI-EAVTAVVVPKAGATVTEDEL----IAH---CRARLAG-FKVPKRVIFVDELPRNPSG 506
Query: 710 KVMRRVLRKQLAQLDQ 725
K+++R LR++ A
Sbjct: 507 KILKRELRERYAGAFT 522
|
Length = 523 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 4e-08
Identities = 111/541 (20%), Positives = 201/541 (37%), Gaps = 73/541 (13%)
Query: 203 DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262
DG V+ + +EL V +A L LG+ +G ++ +P +YLA G ++
Sbjct: 46 DGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVL 105
Query: 263 VSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSS 322
+ F E+S L + +K + D + A +V+
Sbjct: 106 NPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDG--- 162
Query: 323 FSMKLRDGDISWLDFLERVRKLKENEFAAVEQ----PVEAFTNILFSSGTTGEPKAIPWT 378
DGD S+ L + + AA+ + T ++++SGTTGEPK + T
Sbjct: 163 ------DGDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHT 216
Query: 379 NATPFKAAADAWCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYNGSPL 434
T F +++ D++ + + G+M G L+ +LN ++ +P
Sbjct: 217 ANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYG--LMMPLILNATAVLQDIWNPA 274
Query: 435 GSGFAKFVQDAKVTM-LGVVP---SIVRTWKSTNCIDGYDWSSIRCFGSTGE--ASNVDE 488
+ A+ +++ VT + P + R K + G S+ F G + E
Sbjct: 275 RA--AELIRETGVTFTMASTPFLTDLCRAVKES----GAPVPSLFTFLCAGAPIPGILVE 328
Query: 489 YLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST----PAMGCKLFILGNDG 544
W L ++ G TE G +T +L ST P G ++ ++ +G
Sbjct: 329 RAW---ELLGALIVSAWGMTENGAVTVT---EPDDALEKASTTDGRPLPGVEVKVIDANG 382
Query: 545 CPIPQNVPGMGELALSPLIFGASS-------TLLNANHYDVYFSGMPSRNGQILRRHGDV 597
+ Q G L+ G S+ LN+ + +F GD+
Sbjct: 383 AKLSQGETG------RLLVRGCSNFGGYLKRPHLNSTDAEGWFDT------------GDL 424
Query: 598 FERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 657
+ + GY R +GR+ D + GG + VEIE + + V + A + P G
Sbjct: 425 AFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPA-VAQVAIVAYPDERLGERAC 483
Query: 658 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717
+VV + + A+Q + + + +LP T K+ + LR
Sbjct: 484 AVVVPKPGCTLDFAAMVAFLKAQKVALQ------YIPERLEVVDALPATPAGKIQKFRLR 537
Query: 718 K 718
+
Sbjct: 538 E 538
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 6e-08
Identities = 122/521 (23%), Positives = 202/521 (38%), Gaps = 67/521 (12%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISK 282
+A L GL G +A+ M N VV LA A +VV + + E R + +
Sbjct: 56 LAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAG 115
Query: 283 AKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAI-VIPAKGSSFSMKLRDGDISWLDFLERV 341
A+ + D D++ P PL + V G S D +
Sbjct: 116 ARVVLI-DADGPHDRAEPTTR-----WWPLTVNVGGDSGPSGGTLSVHLDAA-------- 161
Query: 342 RKLKENEFAAVEQ---PVEAFTNILFSSGTTGEPKAIPWTN---ATPFKAAADAWCHMDI 395
+ + + P +A I+F+ GTTG PK +PWT+ A+ +A + +
Sbjct: 162 --TEPTPATSTPEGLRPDDAM--IMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSP 216
Query: 396 RKADIVAWPTNLGWMMGPWLVYASLLNGASIAL-YNGSPLGSGFAKFVQDAKVTMLGVVP 454
R A + P G + L+ A+L +G ++ L G F ++ T VP
Sbjct: 217 RDATVAVMPLYHGHGLIAALL-ATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVP 275
Query: 455 SIVRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTE--- 509
+I + ++ G +++R F + A E + PV+ G TE
Sbjct: 276 TIHQILLERAATEPSGRKPAALR-FIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATH 334
Query: 510 ------IGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLI 563
I G T + + + L ST G ++ I+G+DG P+P G L + ++
Sbjct: 335 QVTTTQIEGIGQTENPVVSTGLVGRST---GAQIRIVGSDGLPLPAGAVGEVWLRGTTVV 391
Query: 564 FG--ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGI 621
G T+ AN D + R GD+ ++ G GR + +N GG
Sbjct: 392 RGYLGDPTITAANFTDGWL------------RTGDLGSLSAAGDLSIRGRIKELINRGGE 439
Query: 622 KVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNY-TPPDLNQLRMSF 680
K+S +E + + NV+E A GVP G E + V+V ++S T +L Q
Sbjct: 440 KISPERVEGVLASHP-NVMEAAVFGVPDQLYG-EAVAAVIVPRESAPPTAEELVQF---- 493
Query: 681 NSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721
+++L + LP TA + RR + +Q
Sbjct: 494 ---CRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFG 531
|
Length = 534 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 50/256 (19%), Positives = 93/256 (36%), Gaps = 43/256 (16%)
Query: 215 ELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLE 273
EL +A L A G+ G +A+ + + VV LA++ AG V + ++ +
Sbjct: 4 ELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPA-- 61
Query: 274 ISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDIS 333
RL I+ DA A L + A + R +
Sbjct: 62 --ERLAF-----------ILE------------DAGARLLLTDSA------LASRLAGLV 90
Query: 334 WLDFLERVRKLKENEFAAVEQPVEAFTN------ILFSSGTTGEPKAIPWTNATPFKAAA 387
L +L + A P +A + ++++SG+TG PK + T+ + A
Sbjct: 91 LPVILLDPLELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLA 150
Query: 388 DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGF---AKFVQD 444
+ D V +L + ++ +LL GA++ + A + +
Sbjct: 151 WLARRYGLDPDDRVLQFASLSFDASVEEIFGALLAGATLVVPPEDEERDDAALLAALIAE 210
Query: 445 AKVTMLGVVPSIVRTW 460
VT+L + PS++
Sbjct: 211 HPVTVLNLTPSLLALL 226
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 8e-08
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD+ + GY GR D + GG V E+E + + V+E+A IGVP PD G
Sbjct: 382 GDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPG-VVESAVIGVPHPDFG- 439
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMR 713
E +T VVV K D + + + + FK V + LPR KV +
Sbjct: 440 EGVTAVVVPKPG--AALDEAAILAALKGRLAR-----FKQPKRVFFVDELPRNTMGKVQK 492
Query: 714 RVLRKQLAQL 723
+LR+Q A L
Sbjct: 493 NLLREQYADL 502
|
Length = 504 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPP 650
R GD+ R GY GR D +N GG K+++ E+E N + + V + A + +P
Sbjct: 417 RSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVE---NLLLRHPAVHDAALVAMPDE 473
Query: 651 DGGPEQLTIVVVFKDSNYTPPDLNQ-LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTAT 708
G E+ +V K+ L + LR +A FK+ + + SLP TA
Sbjct: 474 LLG-EKSCAFIVVKEPPLRAAQLRRFLRERGLAA--------FKLPDRIEFVDSLPLTAV 524
Query: 709 NKVMRRVLRKQLA 721
K+ ++ LR++LA
Sbjct: 525 GKIDKKALRRRLA 537
|
Length = 542 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 103/518 (19%), Positives = 184/518 (35%), Gaps = 56/518 (10%)
Query: 209 KSMTLKELRAEVWLVAYAL-NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIAD 267
+ MT K+L V VA L L + KG IAI ++ +V+ AI I V +
Sbjct: 26 EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNI 85
Query: 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKL 327
E+ +L+ S +F + +V Q ++I +
Sbjct: 86 RLTENELIFQLKDSGTTVLFVEKTF---QNMALSMQKVSYVQRVISITSLKEIEDRK--- 139
Query: 328 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA 387
D VE+ A I ++SGTTG+PK T F A
Sbjct: 140 IDN--------------------FVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179
Query: 388 DAWCHMDIRKAD--IVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDA 445
+ +D+ D IV P +G + G I P + ++
Sbjct: 180 NNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKA--LSMIEKH 237
Query: 446 KVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYC 505
KVT++ VP+I + + + + + S+R F + G + + R +
Sbjct: 238 KVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDRGF--LFGQGF 295
Query: 506 GGTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLI 563
G TE F+ + + + P + C ++ + + +GEL + P +
Sbjct: 296 GMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVG--EVGELLIRGPNV 353
Query: 564 FGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623
+A + ++G + GD+ G+ GR + + GG +
Sbjct: 354 MKEYWNRPDATEETI-------QDGWLCT--GDLARVDEDGFVYIVGRKKEMIISGGENI 404
Query: 624 SSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSA 683
+E+E++ N + V E A +G G + +V S D+ + F +
Sbjct: 405 YPLEVEQVINKLSD-VYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAK 463
Query: 684 VQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQL 720
+K+ +V L LP+ AT K+ + L QL
Sbjct: 464 --------YKIPKEIVFLKELPKNATGKIQKAQLVNQL 493
|
Length = 496 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAV-DSNVLETAAIGVPPPDGG 653
GDV + GY R R+ D + GG +SS+++E + AV V E A IGV P
Sbjct: 415 GDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENL--AVGHPKVAEAAVIGVYHPKWD 472
Query: 654 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMR 713
L IV + T ++ + + + K P V + ++P TAT K+++
Sbjct: 473 ERPLLIVQLKPGETATREEILK---YMDGKIAKWWMP----DDVAFVDAIPHTATGKILK 525
Query: 714 RVLRKQLA 721
LR+Q
Sbjct: 526 TALREQFK 533
|
Length = 542 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 90/406 (22%), Positives = 145/406 (35%), Gaps = 66/406 (16%)
Query: 342 RKLKENEFAAVEQPVEAFT-------NILF---SSGTTGEPKAIPWTN---ATPFKAAAD 388
+ + F +E P E + F S G+TG PK IP T+ + + +
Sbjct: 157 QTGEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE 216
Query: 389 AWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY-NGSPLGSGFAKFVQDAKV 447
C + + + A P + + G + L + SP F ++ KV
Sbjct: 217 I-CWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPT-DCF-PLIERHKV 273
Query: 448 TMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG 507
T+ +VP V W D SS++ G A R + P + C
Sbjct: 274 TVTALVPPAVALWMQAASKSRADLSSLK-LLQVGGAKFSAA----AARRV--PAVFGCQL 326
Query: 508 TEIGG---GFITGSLLQAQSLAAFSTPAMGC------KLFILGNDGCPIPQNVPGMGELA 558
++ G G + + L + F+T G ++ ++ + G P+ GM
Sbjct: 327 QQVFGMAEGLVNYTRLDDPAEIIFTT--QGRPMSPDDEVRVVDDHGNPVAPGETGM---- 380
Query: 559 LSPLIFGASSTLLNANHYDV--YFSGMPSRNGQILR-----RHGDVFERTSGGYYRAHGR 611
LL Y Y+ P N GD+ T GY GR
Sbjct: 381 -----------LLTRGPYTFRGYYKA-PEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGR 428
Query: 612 ADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPP 671
A D +N GG K+++ EIE + A V + A + +P G E+ +V +D
Sbjct: 429 AKDQINRGGEKIAAEEIENLLLA-HPAVHDAALVSMPDELLG-EKSCAFIVVRDPALKAA 486
Query: 672 DLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717
L + A + KL + + SLP TA KV ++ LR
Sbjct: 487 QLRRFLRERGLA-EYKLPDRVEF-----VDSLPLTAVGKVDKKALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD+ R + G+ GR D M + G +S+ IERI + A VP G
Sbjct: 385 GDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERIL-LRHPAINRVAVYAVPDERVGD 443
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714
+ + +V+ + + P F +A Q L +V LP TATNKV++R
Sbjct: 444 QVMAALVLRDGATFDPDAFAA----FLAA-QPDLGTKAWPRYVRIAADLPSTATNKVLKR 498
Query: 715 VLRKQ 719
L Q
Sbjct: 499 ELIAQ 503
|
Length = 540 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 7e-07
Identities = 118/548 (21%), Positives = 207/548 (37%), Gaps = 98/548 (17%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN-VNSVVIYLAIVLAGYIVVSIADSFA 270
T + V +A AL +LG+ G +A + N + +Y A+ G ++ ++ +
Sbjct: 27 TYADFYRRVRRLANALESLGVKPGDRVAT-LAWNTHRHLELYFAVPGMGAVLHTLNPRLS 85
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKS-IPLYSRVIDAQAPLAIVIPAKGSSFSMKLRD 329
+I+ + ++ K IF D +PL + + V+ +
Sbjct: 86 PEQIAYIINHAEDKVIFV-------DDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLP 138
Query: 330 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPF-----K 384
++ + LE E+ E + ++SGTTG PK + +++ +
Sbjct: 139 NVYAYEELLEEE----SPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLAS 194
Query: 385 AAADAWCHMDIRKADIV----------AWPTNLGWMMGPWLVYASLLNGASIALYNGSPL 434
A D+ + + ++D V AW G L YA+ + GA + L
Sbjct: 195 ALPDS---LGLSESDTVLPVVPMFHVNAW--------G--LPYAATMVGAKLVLPGRYLD 241
Query: 435 GSGFAKFVQDAKVTMLGVVPSI---VRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 491
+ +++ KVT+ VP+I + + N G D SS+R G A
Sbjct: 242 PASLLDLIEEEKVTVSAGVPTIWLGLLNYLEAN---GKDLSSLRRVVVGGSALP----RS 294
Query: 492 LMGRA--LYKPVIEYCGGTE---IG-GGFITGSLLQAQSLAAFS------TPAMGCKLFI 539
L+ + VI G TE +G + L+ P G +L I
Sbjct: 295 LIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRI 354
Query: 540 LGNDGCPIPQNVPGMGEL-ALSPLI----FGASSTLLNANHYDVYFSGMPSRNGQILRRH 594
+ ++G +P + +GEL P + + D +F R
Sbjct: 355 VDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEELT-RDGWF------------RT 401
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDG 652
GDV GY + RA D + GG +SSVE+E NA+ ++ V E A +GVP
Sbjct: 402 GDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELE---NALMAHPAVAEAAVVGVPHEKW 458
Query: 653 GPEQLTIVVVFKDSNYTPPDL-NQLRMSFNSAVQKKLNPLFKVSH-VVPLPSLPRTATNK 710
G L +VV+ + T +L L K + + VV + +P+T+ K
Sbjct: 459 GERPLAVVVLKPGAKVTEEELLEHL---------AKKVAKWWLPDRVVFVDEIPKTSVGK 509
Query: 711 VMRRVLRK 718
++ LR+
Sbjct: 510 FDKKALRE 517
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE---RICNAVDSNVLETAAIGVPPPD 651
D+ + GY GR + GG V E+E V + +G+P P
Sbjct: 329 DDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQ----DVCVLGLPDPH 384
Query: 652 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNK 710
G E +T + V KD + + +L A++ +L+P FK H +P+P LPR K
Sbjct: 385 WG-EVVTAIYVPKDPSISLEELKT-------AIKDQLSP-FKQPKHWIPVPQLPRNPQGK 435
Query: 711 VMRRVLRKQLAQ 722
+ R+ L++ Q
Sbjct: 436 INRQQLQQIAVQ 447
|
Length = 452 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 15/165 (9%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ T +EL V +A AL+ G+ G + I M V LA + G I V +
Sbjct: 41 NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFR 100
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
EI+ + A + T+ + P+ + V D L+ V+ A GSS
Sbjct: 101 LTPPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVAGGSS-----D 149
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK 373
D + + D L A V+ P ++ I+++SGTTG PK
Sbjct: 150 DSVLGYEDLLAE----AGPAHAPVDIPNDSPALIMYTSGTTGRPK 190
|
Length = 542 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV--NSVVIYLAIVLAGYIVVSIA 266
K++T EL +A L + GL KG+ +AI MP NV V I A++ AGY+VV++
Sbjct: 47 KAITYGELDELSRALAAWLQSRGLAKGARVAIMMP-NVLQYPVAIA-AVLRAGYVVVNVN 104
Query: 267 DSFASLEISARLRISKAKAIF 287
+ E+ +L+ S A+AI
Sbjct: 105 PLYTPRELEHQLKDSGAEAIV 125
|
Length = 557 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 38/199 (19%)
Query: 530 TPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLN-------ANHYDVYFS 581
P G + ++ DG P+P + +GEL + P +F LN A D +F
Sbjct: 297 LPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDG---YLNRPDATAAAFTADGWF- 352
Query: 582 GMPSRNGQILRRHGDVFERTSGGYYRAHGR-ADDTMNLGGIKVSSVEIERICNAV--DSN 638
R GDV G +R GR + D + GG ++ + EIE A+
Sbjct: 353 -----------RTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIE---TALLGHPG 398
Query: 639 VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVV 698
V E A +GVP D G +++ VV D ++L + F V ++L+ + V
Sbjct: 399 VREAAVVGVPDDDLG-QRIVAYVVGAD----DVAADEL-IDF---VAQQLSVHKRPREVR 449
Query: 699 PLPSLPRTATNKVMRRVLR 717
+ +LPR A KV+++ L
Sbjct: 450 FVDALPRNAMGKVLKKQLL 468
|
Length = 471 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 610 GRADDTMNLGGIKVSSVEIERICNAVDSNVLE---TAAIGVPPPDGGPEQLTIVVVFKDS 666
GR D + + G+ + EIE V +E TAA V G ++L V F
Sbjct: 448 GREKDMIIINGVNYYNHEIEAAVEQVPG--VEPSFTAACAVRDAGSGTDEL--AVFFVPR 503
Query: 667 NYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLP--SLPRTATNKVMRRVLRKQL 720
L L + + V +K+ ++V+PL P+T+ K+ R LRK+
Sbjct: 504 YDLDDRLAALLRAIRTHVARKIG--IAPAYVIPLAKEDFPKTSLGKIQRAQLRKRF 557
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-06
Identities = 81/366 (22%), Positives = 135/366 (36%), Gaps = 36/366 (9%)
Query: 362 ILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIR----KADIVAWPTNLGWMMGPWLVY 417
++++SG+TG+PK +A ++ C M D V T + + W +
Sbjct: 660 VIYTSGSTGKPKGA----GNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFF 715
Query: 418 ASLLNGASIALYNGSPLGSGF--AKFVQ---DAKVTMLGVVPSIVRTWKSTNCIDGYDWS 472
L++GA + + + G AK V+ V L VPS+++ + + +
Sbjct: 716 WPLMSGARLVV---AAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA--SCT 770
Query: 473 SIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTP 531
S+R +GEA D + + + G TE + + + P
Sbjct: 771 SLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRP 830
Query: 532 AMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQIL 591
+IL + P+P V G LA L A F P G+ +
Sbjct: 831 IANLACYILDANLEPVPVGVLGELYLAGRGL---ARGYHGRPGLTAERFVPSPFVAGERM 887
Query: 592 RRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 651
R GD+ + G GR D + L G+++ EIE V E A + V D
Sbjct: 888 YRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPW-VREAAVLAV---D 943
Query: 652 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNK 710
G +QL VV + R + + + L P + V + + L LP T K
Sbjct: 944 G--KQLVGYVVLESEG------GDWREALKAHLAASL-PEYMVPAQWLALERLPLTPNGK 994
Query: 711 VMRRVL 716
+ R+ L
Sbjct: 995 LDRKAL 1000
|
Length = 5163 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 33/164 (20%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
++T EL +A AL A G+ G +A+ MP +V L I+LAG V I
Sbjct: 12 TLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQ 71
Query: 270 ASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRD 329
+ +A L + A+A+ T + + +++ A
Sbjct: 72 PAERRAAILARAGARAVLTD-------------PGLAQPEEAPDLLVVA----------- 107
Query: 330 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK 373
D + + + ++F+SG+TGEPK
Sbjct: 108 -DDAAAA--------ESPAPPPPRVDPDDLAYVIFTSGSTGEPK 142
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
R DV G R GR DD + GG + E+ER+ V E IG+P
Sbjct: 379 RTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPG-VTEVVVIGLPDERW 437
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712
G VV + + L+ + A K+ F + LP+ A NKV+
Sbjct: 438 GQSVTACVVPREGETLSADALDTFCRASELADFKRPRRYFFLDE------LPKNAMNKVL 491
Query: 713 RRVL 716
RR L
Sbjct: 492 RRQL 495
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 89/374 (23%), Positives = 140/374 (37%), Gaps = 40/374 (10%)
Query: 357 EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIR--KADIVAWPTNLGWMMGPW 414
+A ++SGTTG PKA +A P DA C +R D + + G
Sbjct: 145 DALAYATYTSGTTGPPKAAIHRHADPL-TFVDAMCRKALRLTPEDTGLCSARMYFAYGLG 203
Query: 415 -LVYASLLNGASIALYNGSPLGSGFAKFVQDA-KVTMLGVVPSIVRTWKSTNCIDGYDWS 472
V+ L G S A+ N +P+ A + ++L VP+ + D +
Sbjct: 204 NSVWFPLATGGS-AVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSPDSF--R 260
Query: 473 SIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL--LQAQSLAAFST 530
S+RC S GEA + LM P+++ G TE+G F++ + + +L
Sbjct: 261 SLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLP 320
Query: 531 PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQI 590
P ++ ++ DG V G + G + N D + N
Sbjct: 321 PY---EIRVVAPDGTTAGPGVEG------DLWVRGPAIAKGYWNRPDSPVA-----NEGW 366
Query: 591 LRRHGDVFERTSGGYYRAHG-RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 649
L V + + RADDT +GG+ V E+ER+ ++ V E A + V
Sbjct: 367 LDTRDRV--CIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEA-VAEAAVVAVRE 423
Query: 650 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKL---NPLFKVSH-VVPLPSLPR 705
G +V + S + + L FKV H + LPR
Sbjct: 424 STGASTLQAFLV--------ATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPR 475
Query: 706 TATNKVMRRVLRKQ 719
T K++R LRKQ
Sbjct: 476 TPNGKLVRGALRKQ 489
|
Length = 705 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 55/195 (28%), Positives = 76/195 (38%), Gaps = 28/195 (14%)
Query: 531 PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL-------LNANHY-DVYFSG 582
P ++++L D P+P VPG EL I G L A + F
Sbjct: 263 PIANTQVYVLDEDLQPVPPGVPG--EL----YIGGDGVARGYLGRPELTAERFVPDPFDD 316
Query: 583 MPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLET 642
G L R GD+ G GRADD + + G ++ EIE A +
Sbjct: 317 ----PGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPG--VAD 370
Query: 643 AAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLP 701
A + V G ++L VV K PD LR +A++ L P + V + V L
Sbjct: 371 AVVVVREEGPGDQRLVAYVVPKAG--AAPDAEALR----AALRATL-PAYMVPAAFVQLD 423
Query: 702 SLPRTATNKVMRRVL 716
LP T KV R+ L
Sbjct: 424 ELPLTPNGKVDRKAL 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 49/194 (25%), Positives = 75/194 (38%), Gaps = 28/194 (14%)
Query: 531 PAMGCKLFILGNDGCPIPQNVPGMGELALS-PLIFGASSTLLNANHYDVYFSGMPSRNGQ 589
P G ++ +L DG + Q G E+ + PL+ + P +
Sbjct: 344 PTPGLRVALLDEDGREVAQGEVG--EICVRGPLVMDG-------------YWNRPEETAE 388
Query: 590 ILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAI 645
R GDV G+Y R D + GG V E+E A V + A I
Sbjct: 389 AFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVED-VLAEHPAVAQVAVI 447
Query: 646 GVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPR 705
GVP G E +T VVV + D +L+ + V+++ + V + SLP
Sbjct: 448 GVPDEKWG-EAVTAVVVLRPG--AAVDAAELQ----AHVKERKGSVHAPKQVDFVDSLPL 500
Query: 706 TATNKVMRRVLRKQ 719
TA K ++ LR +
Sbjct: 501 TALGKPDKKALRAR 514
|
Length = 524 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 47/171 (27%), Positives = 65/171 (38%), Gaps = 24/171 (14%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSI 265
+S T EL A V VA AL LGL KG +A + NS +++LA AG + V +
Sbjct: 35 RSWTYAELDAAVNRVAAALLDLGLKKGDRVAA---LGHNSDAYALLWLACARAGAVHVPV 91
Query: 266 ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSM 325
E++ L S A+A L A A L + S +
Sbjct: 92 NFMLTGEELAYILDHSGARAFLVDP---------ALAPTAEAALALLPVD--TLILSLVL 140
Query: 326 KLRDGDISWLDFLERVRKLKENEFAAVEQPV---EAFTNILFSSGTTGEPK 373
R+ WLDF + E A + IL++SGT PK
Sbjct: 141 GGREAPGGWLDFAD----WAEAGSVAEPDVELADDDLAQILYTSGTESLPK 187
|
Length = 523 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 60/268 (22%), Positives = 103/268 (38%), Gaps = 61/268 (22%)
Query: 201 EGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSV---VIYLAIVL 257
E GG + +T E +V +A AL LGL + I ++ NS+ ++ LA +
Sbjct: 16 ERRGGGEWRRVTYAEALRQVRAIAQALLDLGLSAERPLMI---LSGNSIEHALLALAAMY 72
Query: 258 AGYIVVSIADSFASL-EISARLR----ISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL 312
AG V ++ +++ L + A+LR + A+F +D ++R + A
Sbjct: 73 AGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAEDG--------AAFARALAALGLA 124
Query: 313 AI-VIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFT-----NILFSS 366
+ V+ +G+ I++ L AAV+ A LF+S
Sbjct: 125 GVPVVAVRGAP-----GGPAIAFAALLA------TPPTAAVDAAFAAVGPDTVAKYLFTS 173
Query: 367 GTTGEPKAIPWT------NATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW------ 414
G+TG PKA+ T N A W + P + W+ PW
Sbjct: 174 GSTGLPKAVINTHRMLCANQ---AMIAQCWPFLTEEP------PVLVDWL--PWNHTFGG 222
Query: 415 --LVYASLLNGASIALYNGSPLGSGFAK 440
L NG ++ + +G P+ F +
Sbjct: 223 NHNFNMVLYNGGTLYIDDGKPVPGLFEE 250
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD+ GY R+ D + GG +SS+E+E + + VLE A + P G
Sbjct: 406 GDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPA-VLEAAVVARPDEKWGE 464
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714
VV+ ++ T +L + + ++KL FKV V LP+TAT K+ +
Sbjct: 465 TPCAFVVLKPGASVTEEEL----IEY---CREKL-AHFKVPKTVEFVELPKTATGKIQKF 516
Query: 715 VLRK 718
VLR+
Sbjct: 517 VLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
R GDV G+ R D + GG ++S E+ER+ + V E A IGV
Sbjct: 376 RSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYEL-PEVAEAAVIGVHDDRW 434
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQ-LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNK 710
G +VV+ + T L++ R S FKV + LPR + K
Sbjct: 435 GERITAVVVLNPGATLTLEALDRHCRQRLAS---------FKVPRQLKVRDELPRNPSGK 485
Query: 711 VMRRVLRKQL 720
V++RVLR +L
Sbjct: 486 VLKRVLRDEL 495
|
Length = 497 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 9e-06
Identities = 124/572 (21%), Positives = 207/572 (36%), Gaps = 107/572 (18%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
+ T EL A+V A L++LG+ G +A +P + AG I I
Sbjct: 58 TWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLL 116
Query: 270 ASLEISARLRISKAKAIFT------QDLIIRGDKSIPLYSRVIDAQAPLAI-----VIPA 318
+I+ LR + AK + T D+ K + + + + + + + +
Sbjct: 117 EPEQIAELLRAAGAKVLVTLGPFPGTDI---WQKVAEVLAALPELRTVVEVDLARYLPGP 173
Query: 319 KGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF-SSGTTGEPKAIPW 377
K + + R LDF + + + + F + GTTG PK
Sbjct: 174 KRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQH 233
Query: 378 TNATPFKAAADAWC---HMDIRKADIVAWPTNL---GWMMGPWLVYASLLNGASIALYNG 431
T+ A+AW + + D V L ++ L A L GA + L
Sbjct: 234 THGN---EVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGL--APLARGAHVVL--A 286
Query: 432 SPLG-------SGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEAS 484
+P G + F K V+ ++ L VP++ +DG+D SS+R + G A
Sbjct: 287 TPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAA-LLQVPVDGHDISSLR-YALCGAAP 344
Query: 485 NVDEYLWLMGRALYK--------PVIEYCGGTE---------IGGGFITGSLLQAQSLAA 527
+ +++ ++E G TE G GS+ L
Sbjct: 345 --------LPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSV--GLRL-- 392
Query: 528 FSTPAMGCKLFILGNDGCPIPQNVP--GMGELALS-PLIFGASSTLLNANH-YDVYFSGM 583
P ++ IL + G ++ +G L ++ P +F S L A H ++
Sbjct: 393 ---PYQRVRVVILDDAG-RYLRDCAVDEVGVLCIAGPNVF---SGYLEAAHNKGLWLEDG 445
Query: 584 PSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETA 643
G + R D GY+ GRA D + GG + IE + V A
Sbjct: 446 WLNTGDLGRIDAD-------GYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPA-VALAA 497
Query: 644 AIGVPPPDGGPEQLTIVVVFKDSNYTPPDLN---QLRMSFNSAVQKKLNPLFKVSHVVPL 700
A+G P G + V + ++ T +L + ++ +AV K HV L
Sbjct: 498 AVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPK---------HVRIL 548
Query: 701 PSLPRTATNKV---------MRRVLRKQLAQL 723
+LP+TA K+ +RRVLR L
Sbjct: 549 DALPKTAVGKIFKPALRRDAIRRVLRAALRDA 580
|
Length = 632 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 40/196 (20%)
Query: 539 ILGNDGCPIPQNVPGMGELAL-SPLIFGA--SSTLLNANHYD---VYFSGMPSRNGQILR 592
+ DG P+PQ G L P F S NA+ +D Y SG
Sbjct: 367 VADADGNPLPQGEVGR--LMTRGPYTFRGYYKSPQHNASAFDANGFYCSG---------- 414
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
D+ GY GR D +N GG K+++ EIE + + V+ A + +
Sbjct: 415 ---DLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPA-VIHAALVSMEDELM 470
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPL----FKV-SHVVPLPSLPRTA 707
G + +VV L+ +++ L FK+ V + SLP TA
Sbjct: 471 GEKSCAFLVV----------KEPLK---AVQLRRFLREQGIAEFKLPDRVECVDSLPLTA 517
Query: 708 TNKVMRRVLRKQLAQL 723
KV ++ LR+ LA
Sbjct: 518 VGKVDKKQLRQWLASR 533
|
Length = 536 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 32/143 (22%), Positives = 46/143 (32%), Gaps = 19/143 (13%)
Query: 577 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 636
D YF G ++RR G GY+ R DT G VS+ E+E +
Sbjct: 317 DAYF-----NTGDLVRRDGF-------GYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHP 364
Query: 637 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSH 696
V E GV P + D + + PLF
Sbjct: 365 G-VEEANVYGVEVPGTEGRAGMAALTLAPG--AAFDPQAFAAHLDEQLPAYARPLF---- 417
Query: 697 VVPLPSLPRTATNKVMRRVLRKQ 719
+ ++ T T K + LRK+
Sbjct: 418 LRVQAAMETTGTFKYQKTDLRKE 440
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 118/525 (22%), Positives = 193/525 (36%), Gaps = 64/525 (12%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+T EL +A+ L ALG+ + I + ++ VV LAI+ AG V + +
Sbjct: 1600 LTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYP 1659
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDG 330
++ + S + + TQ + A+ PL + S+ L
Sbjct: 1660 RERLAYMIEDSGIELLLTQ--------------SHLQARLPLPDGLR------SLVLDQE 1699
Query: 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK--AIPWTNATP-FKAAA 387
D WL+ + AV + ++++SG+TG PK A
Sbjct: 1700 D-DWLE-------GYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQ 1751
Query: 388 DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS--IALYNGSPLGSGFAKFVQDA 445
+A+ + AD+V T+ + + W ++ L+NGA IA + ++
Sbjct: 1752 EAY---QLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQ 1808
Query: 446 KVTMLGVVPSIVRTWKS-----TNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKP 500
+VT L VPS+++ + + S+R GEA V+ + R
Sbjct: 1809 QVTTLHFVPSMLQQLLQMDEQVEHPL------SLRRVVCGGEALEVEALRPWLERLPDTG 1862
Query: 501 VIEYCGGTE----IGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 556
+ G TE + L+ + P +IL P+P V GE
Sbjct: 1863 LFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGV--AGE 1920
Query: 557 LALSPLIFGASSTLLN-ANHYDVYFSGMP-SRNGQILRRHGDVFERTSGGYYRAHGRADD 614
L L + G + LN F P G L R GD+ + G GR D
Sbjct: 1921 LYLGGV--GLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDH 1978
Query: 615 TMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLN 674
+ + G ++ EIE V E I +G +QL VV D D
Sbjct: 1979 QVKIRGFRIELGEIEARLREQGG-VREAVVIAQDGANG--KQLVAYVVPTDPGLVDDDEA 2035
Query: 675 Q--LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVL 716
Q LR + ++ L P + V +H+V L +P T K+ R+ L
Sbjct: 2036 QVALRAILKNHLKASL-PEYMVPAHLVFLARMPLTPNGKLDRKAL 2079
|
Length = 3956 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
R GD+ GY+ R +N+ G KV E+E + VLE IG P P
Sbjct: 313 RTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQ-HPAVLEVCVIGRPDPRR 371
Query: 653 GPEQLTIVVVFKDS---NYTPPDLNQL---RMSFNSAVQKKLNPLFKVSHVVPLPSLPRT 706
G E + VV K T D+ + RM A K + + LP+T
Sbjct: 372 G-EVVKAFVVLKPDYRGKVTEEDIIEWCRERM----AAYKY------PRIIEFVDELPKT 420
Query: 707 ATNKVMRRVL 716
A+ KV+ R+L
Sbjct: 421 ASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 120/534 (22%), Positives = 193/534 (36%), Gaps = 86/534 (16%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS 271
T E A+AL A G+ +G +A+ + + ++L G I V I +
Sbjct: 48 TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRG 107
Query: 272 LEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ--APLAIVIPAKGSSFSMKLRD 329
++ LR S A+ + V++A A L P ++ L D
Sbjct: 108 PQLEHILRNSGARLL------------------VVEAALLAALEAADPGDLPLPAVWLLD 149
Query: 330 GDISW-----LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK 384
S L AA QP + IL++SGTTG K + +A +
Sbjct: 150 APASVSVPAGWSTAPLP-PLDAPAPAAAVQPGDTAA-ILYTSGTTGPSKGVCCPHAQFYW 207
Query: 385 AAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPL-------GSG 437
++ ++I D++ T L P L + + LN AL G+ SG
Sbjct: 208 WGRNSAEDLEIGADDVLY--TTL-----P-LFHTNALNAFFQALLAGATYVLEPRFSASG 259
Query: 438 FAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR-CFGSTGEASNVDEYLWLMGRA 496
F V+ T+ ++ ++V S + +R G A+ + G
Sbjct: 260 FWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGVD 319
Query: 497 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 556
L ++ G TE F+ +Q + A G + ++ +P PG E
Sbjct: 320 L----LDGYGSTETN--FVIAVTHGSQRPGSMGRLAPGFEARVVDEHDQELPDGEPG--E 371
Query: 557 LAL---SPLIFGASSTLLNANHYDVYFSGMPSRNGQILRR---H-GDVFERTSGGYYRAH 609
L L P F A Y GMP + + R H GD R + G++R
Sbjct: 372 LLLRADEPFAF--------ATGYF----GMPEKTVEAWRNLWFHTGDRVVRDADGWFRFV 419
Query: 610 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYT 669
R D + G +SS E+E++ + V A VP G E + VV+ +
Sbjct: 420 DRIKDAIRRRGENISSFEVEQVLLS-HPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALE 478
Query: 670 PPDLNQL---RMSFNSAVQKKLNPLFKVSHVVP-LPSLPRTATNKVMRRVLRKQ 719
P L + R+ F V V + +LP+T KV + VLR+Q
Sbjct: 479 PVALVRHCEPRL-----------AYFAVPRYVEFVAALPKTENGKVQKFVLREQ 521
|
Length = 542 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 120/536 (22%), Positives = 200/536 (37%), Gaps = 77/536 (14%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
++ EL + +A+ L A G+ +AI + VV LA++ AG V + ++
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYP 2088
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDG 330
+ ++ L S A + TQ R + + PL PA + + D
Sbjct: 2089 AERLAYMLEDSGAALLLTQ--------------RHLLERLPL----PAGVARLPL---DR 2127
Query: 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW 390
D W D+ + + A E ++++SG+TG PK + ++ A A
Sbjct: 2128 DAEWADYPD---TAPAVQLAG-----ENLAYVIYTSGSTGLPKGVAVSHG-----ALVAH 2174
Query: 391 CH-----MDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSP-LGSGFAKFVQD 444
C ++ AD + + + LLNGA + + + ++
Sbjct: 2175 CQAAGERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMER 2234
Query: 445 AKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR--CFGSTGEASNVDEY-LWLMG-RALYKP 500
VT+L P ++ DG ++R CFG GEA L R +Y
Sbjct: 2235 HGVTILDFPPVYLQQLAEHAERDGRP-PAVRVYCFG--GEAVPAASLRLAWEALRPVY-- 2289
Query: 501 VIEYCGGTEIGGGFITGSLLQAQ-------SLAAFSTPAMGCKLFILGNDGCPIPQNVPG 553
+ G TE +T L + + + + +IL D + PG
Sbjct: 2290 LFNGYGPTE---AVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLA---PG 2343
Query: 554 M-GELALSPLIFGASSTLLN--ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHG 610
M GEL L G + LN + + S +G+ L R GD+ + G G
Sbjct: 2344 MAGELYLGGE--GLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLG 2401
Query: 611 RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP 670
R D + + G ++ EIE A + V E + G +QL VV D+
Sbjct: 2402 RIDHQVKIRGFRIELGEIEARLQAHPA-VREAVVVAQDGASG--KQLVAYVVPDDA--AE 2456
Query: 671 PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK-QLAQLDQ 725
L +LR + + + P +H V L LP K+ R+ L K ++QL Q
Sbjct: 2457 DLLAELRAWLAARLPAYMVP----AHWVVLERLPLNPNGKLDRKALPKPDVSQLRQ 2508
|
Length = 5163 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 113/559 (20%), Positives = 197/559 (35%), Gaps = 97/559 (17%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
T ++L V +A L ALG+ G + I P ++ A G I+V+I ++
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSM-KLR 328
+ E+ L S + + D D Y ++ P LA P + + +LR
Sbjct: 106 ASELEYALGQSGVRWVICADAFKTSD-----YHAMLQELLPGLAEGQPGALACERLPELR 160
Query: 329 ----------DGDISWLDFLERVRKLKENEFAAVEQPVEAF--TNILFSSGTTGEPKAIP 376
G ++W + R + A + ++ NI ++SGTTG PK
Sbjct: 161 GVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGAT 220
Query: 377 WTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLL---NGASIALYNGS- 432
++ + + + D + P L G +V A+L GA + N +
Sbjct: 221 LSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFG--MVLANLGCMTVGACLVYPNEAF 278
Query: 433 -PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 491
PL + + V++ + T L VP++ +D SS+R TG
Sbjct: 279 DPLAT--LQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLR----TG---------- 322
Query: 492 LMG-----RALYKPVIE--YCGGTEIGGGFITGSLLQAQSLAAFS-----------TPAM 533
+M + + V++ + +I G S + Q+ AA P +
Sbjct: 323 IMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHL 382
Query: 534 GCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRR 593
K ++ DG +P GE+ L S + + P + +
Sbjct: 383 EVK--VVDPDGATVP-----RGEIG--ELCTRGYSVMKG-------YWNNPEATAESIDE 426
Query: 594 H-----GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648
GD+ GY R GR+ D + GG + EIE V + GVP
Sbjct: 427 DGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFT-HPAVADVQVFGVP 485
Query: 649 PPDGGPEQLTIVVVFKDSNYTPPDLNQL---RMSFNSAVQKKLNPLFKV-SHVVPLPSLP 704
G E + V + + +L + R++ FKV + + P
Sbjct: 486 DEKYGEEIVAWVRLHPGHAASEEELREFCKARIAH-----------FKVPRYFRFVDEFP 534
Query: 705 RTATNKVMRRVLRKQLAQL 723
T T KV + +R+ +
Sbjct: 535 MTVTGKVQKFRMREISIEE 553
|
Length = 558 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 28/184 (15%)
Query: 209 KSMTLKELRAEV-WLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIAD 267
++++ +EL E L Y G+ KG + + M + V+ Y AI+ A +VV +
Sbjct: 34 RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNP 93
Query: 268 SFASLEISARLRISKAK-AIFTQDLIIRGDKSIPL-------------YSRVIDAQAPLA 313
E++ + S A+ AI +L K P YS + A+ +A
Sbjct: 94 MNREEELAHYVTDSGARVAIVGSELA---PKVAPAVGNLRLRHVIVAQYSDYLPAEPEIA 150
Query: 314 IVIPA---KGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTG 370
+PA G ++W + L + + V +T SGTTG
Sbjct: 151 --VPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYT-----SGTTG 203
Query: 371 EPKA 374
PK
Sbjct: 204 VPKG 207
|
Length = 546 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 124/556 (22%), Positives = 195/556 (35%), Gaps = 117/556 (21%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ +T +EL +A+ +LGL +G +AI M N+ + + A +G +
Sbjct: 23 EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
E + + S A+A+ T + +D L P +
Sbjct: 83 LTPAEAAYIVDDSGARALITS-------------AAKLDVARALLKQCPG-VRHRLVLDG 128
Query: 329 DGDIS-WLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA 387
DG++ ++ + E V L A ++ + T++L+SSGTTG PK I P
Sbjct: 129 DGELEGFVGYAEAVAGLPATPIA--DESLG--TDMLYSSGTTGRPKGI--KRPLP----- 177
Query: 388 DAWCHMDIRKADIVAWPTNLGWMMGPWLVY---ASLLNGASIALYNGSPLGSG------- 437
+ W +VY A L + A + G
Sbjct: 178 ----EQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQR-AVMLVIRLGGTVIVME 232
Query: 438 ------FAKFVQDAKVTMLGVVPSI-VRTWKSTNCI-DGYDWSSIR--------CFGSTG 481
+ +++ VT +VP++ R K + D YD SS+ C
Sbjct: 233 HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVK 292
Query: 482 EASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFST---PAMGCKL 537
E +D W + P+I EY TE G GF + + LA T G L
Sbjct: 293 EQM-ID---W------WGPIIHEYYAATE-GLGFT--ACDSEEWLAHPGTVGRAMFG-DL 338
Query: 538 FILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDV 597
IL +DG +P PG I+ Y + P++ + RH D
Sbjct: 339 HILDDDGAELPPGEPGT--------IWFEGGRPF------EYLND-PAKTAE--ARHPDG 381
Query: 598 FERTSG--GYYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 649
T G GY G RA + GG+ + E E + V + A GVP
Sbjct: 382 TWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLL-ITHPKVADAAVFGVPN 440
Query: 650 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHV-VP-----LPSL 703
D G E++ VV D P L ++F ++S P L
Sbjct: 441 EDLG-EEVKAVVQPVDGVDPGPALAAELIAFCRQ---------RLSRQKCPRSIDFEDEL 490
Query: 704 PRTATNKVMRRVLRKQ 719
PR T K+ +R+LR +
Sbjct: 491 PRLPTGKLYKRLLRDR 506
|
Length = 511 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 4e-05
Identities = 50/210 (23%), Positives = 77/210 (36%), Gaps = 38/210 (18%)
Query: 189 RSLDDIVIRWCDE----------GDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAI 238
R L D ++ W E G G + +T E V +A AL GL +
Sbjct: 39 RRLTDRLVHWAQEAPDRVFLAERGADG-GWRRLTYAEALERVRAIAQALLDRGLSAERPL 97
Query: 239 AIDMPMNVNSV---VIYLAIVLAG--YIVVSIADSFASLEISARLR----ISKAKAIFTQ 289
I NS+ ++ LA + AG Y VS A S S + +LR + +F
Sbjct: 98 MILSG---NSIEHALLALAAMYAGVPYAPVSPAYSLVSQDF-GKLRHVLELLTPGLVFAD 153
Query: 290 DLIIRGDKSIPLYSRVIDAQAPLAI-VIPAKGSSFSMKLRDGDISWLDFLERVRKLKENE 348
D ++R + A P + V+ +G+ + L +
Sbjct: 154 D--------GAAFARALAAVVPADVEVVAVRGAVPG----RAATPFAALLATPPTAAVDA 201
Query: 349 FAAVEQPVEAFTNILFSSGTTGEPKAIPWT 378
A P + LF+SG+TG PKA+ T
Sbjct: 202 AHAAVGP-DTIAKFLFTSGSTGLPKAVINT 230
|
Length = 614 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD R G+ GR D+ + G +VS E+E + A V E A GVP P G
Sbjct: 401 GDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYAT-GLVAEAVAFGVPDPTLGQ 459
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPL-PSLPRTATNKVMR 713
IV+V D L + + +L P + V ++ + +LPR A K+ R
Sbjct: 460 ---AIVLVVTPPGGEELDRAALL----AECRARL-PNYMVPALIHVRQALPRNANGKIDR 511
Query: 714 RVLRKQ 719
+ L K+
Sbjct: 512 KALAKE 517
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 5e-05
Identities = 58/206 (28%), Positives = 86/206 (41%), Gaps = 35/206 (16%)
Query: 191 LDDIVIRWCDEG-----DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
LD R+ D D GL T +E EV +A L ALG++KG + I P
Sbjct: 22 LDRTAARYPDREALVYRDQGL---RWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNV 78
Query: 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRV 305
V+ A G I+V+I ++ E+ L S KA+ G K Y +
Sbjct: 79 PEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALI----AADGFKDSD-YVAM 133
Query: 306 IDAQAP-LAIVIPAKGSSFSM-KLR----------DGDISWLDFLERVRKLKENEFAAVE 353
+ AP LA P + S + +LR G +++ + L R + + E AA +
Sbjct: 134 LYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQ 193
Query: 354 ------QPVEAFTNILFSSGTTGEPK 373
P+ NI ++SGTTG PK
Sbjct: 194 ATLDPDDPI----NIQYTSGTTGFPK 215
|
Length = 559 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 27/172 (15%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSIADSFASLEISARLR 279
+A AL +LGL+ G IAI ++ N ++ LAI +AG++ V + + + I L
Sbjct: 19 IAAALQSLGLEPGDRIAI---LSKNCAEWIIADLAIWMAGHVSVPLYPTLTAETIRYVLE 75
Query: 280 ISKAKAIFT--QDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337
S AKA+F D +P + + W D
Sbjct: 76 HSDAKALFVGKLDDWDAMKAGVP--EGLPTIILFPYSTLKD------------HYKWDDL 121
Query: 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA 389
L L+ E I+++SGTTG+PK + + F AA
Sbjct: 122 LAATEPLQGR----PLPEPEDLATIVYTSGTTGQPKGVMLSFGA-FAFAAQG 168
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 26/217 (11%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVV-IYLAIVLAGYIVVSIADSFA 270
T +E +A AL+ LG+ KG +A+ P N +++ + + +AG ++V +
Sbjct: 31 TYRETYDRCRRLASALSKLGIGKGDVVAVLAP-NTPAMLEAHFGVPMAGAVLVPLNTRLD 89
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDG 330
+ +I+ L S+AK +F D+ S +A A L+ +
Sbjct: 90 ADDIAFILNHSEAKVLFV-------DQE--FLSLAEEALALLSTKEIIDTEIIVISPAAE 140
Query: 331 DISWLDFLERVRKLKENEFAAVEQPV----EAFTNILFSSGTTGEPKAIPWTNATPFKAA 386
D D+ + L + + P + + + ++SGTTG PK + +T+ + A
Sbjct: 141 DSEEGDYED---LLAGGDPDPLPIPPDDEWDPIS-LNYTSGTTGNPKGVVYTHRGAYLNA 196
Query: 387 ADAWCHMDIRKADIVAW--P---TNLGWMMGPWLVYA 418
+ + W P N GW PW + A
Sbjct: 197 LGNVIEWGMPDRPVYLWTLPMFHCN-GW-CFPWAITA 231
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 18/178 (10%)
Query: 203 DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262
D P+ + ELRA V +A L A G+ +G +A+ +P + VV++LA G V
Sbjct: 31 DEDRPL---SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATV 87
Query: 263 VSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ------APLAIVI 316
+++ + S E++ L +A+ + G K I + + V+
Sbjct: 88 IAVNTRYRSHEVAHILGRGRARWLVVWP----GFKGIDFAAILAAVPPDALPPLRAIAVV 143
Query: 317 PAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQ-PVEAFTNILFSSGTTGEPK 373
+ + + E AA FT +SGTT PK
Sbjct: 144 DDAADATPAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFT----TSGTTSGPK 197
|
Length = 540 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD+ G+ R R D + + G V EIE + + VLE AA+GVP G
Sbjct: 437 GDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVV-MLHPKVLEVAAVGVPSEVSG- 494
Query: 655 EQLTIVVVFKDSNYTPPDL-NQLRMSFNSAVQKKLNPLFKVSHVVPL-PSLPRTATNKVM 712
E + I VV KD + T +L R +KV +V LP++ K++
Sbjct: 495 EAVKIFVVKKDPSLTEEELITHCRRHLTG---------YKVPKLVEFRDELPKSNVGKIL 545
Query: 713 RRVLR-KQLAQLDQN 726
RR LR + A++D
Sbjct: 546 RRELRDEARAKVDNK 560
|
Length = 560 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 693 KVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724
V + LP+T + K++RR+LR D
Sbjct: 3 VPREVEFVDELPKTRSGKILRRLLRAIALGED 34
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 144/583 (24%), Positives = 220/583 (37%), Gaps = 116/583 (19%)
Query: 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAI 240
+ L ++R D I + W D +S T +E+ A V +A AL A G+ KG I +
Sbjct: 11 HFLRQAARRFPDRIALVWGD--------RSWTWREIDARVDALAAALAARGVRKGDRILV 62
Query: 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIP 300
A G + V E++ S A+A +I D P
Sbjct: 63 HSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARA-----MICHAD--FP 115
Query: 301 LYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEF--AAVE--QP 355
++ + A +P L V+ G+ LD+ V + AAV+ P
Sbjct: 116 EHAAAVRAASPDLTHVVAIGGARAG----------LDYEALVARHLGARVANAAVDHDDP 165
Query: 356 VEAFTNILFSSGTTGEPKAIPWTNAT-PFKAA---ADAWCHMDIRKADIVAWPTNLGWMM 411
F F+SGTTG PKA T+ F AD + A +V P + G
Sbjct: 166 CWFF----FTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHG--A 219
Query: 412 GPWLVYASLLN---GASIALYNGSPL-GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID 467
G ++ L GA+ L + V+ +VT L VP+I++ +D
Sbjct: 220 G---IHQ-LCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVD 275
Query: 468 GYDWSSIRCFGSTGEASNVDEYLWLMG---------RALYK--PVI-EYCGGTEIGGGFI 515
YD SS+R Y+ G RAL K V+ +Y G E+ G I
Sbjct: 276 RYDHSSLR-------------YVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGN-I 321
Query: 516 TGSLLQAQSLAAFSTPAM----------GCKLFILGNDGCPIPQNVPG-MGEL-ALSPLI 563
T +L A P G ++ I ++G +P PG GE+ + P +
Sbjct: 322 T--VLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELP---PGETGEICVIGPAV 376
Query: 564 FGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLG 619
F A +Y+ P N + R R GD+ + G+ GRA D G
Sbjct: 377 F--------AGYYN-----NPEANAKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISG 423
Query: 620 GIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMS 679
G V EIE + V E A +GVP P G E V V +D P D +L
Sbjct: 424 GSNVYPREIEEKLLTHPA-VSEVAVLGVPDPVWG-EVGVAVCVARDG--APVDEAELLAW 479
Query: 680 FNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722
+ V + P +LP++ K+ ++++R++L +
Sbjct: 480 LDGKVARYKLP----KRFFFWDALPKSGYGKITKKMVREELEE 518
|
Length = 528 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+++T EL V +A L ALG+ G +AI V+ LAI+ AG + V I +
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63
Query: 269 FASLEISARLRISKAKAIFTQD 290
+ E++ L S A+ +F +D
Sbjct: 64 SSPEEVAYILNDSGARVVFVED 85
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
GD+ G+ R D + + G V EIE + A+ VLE AA+GVP
Sbjct: 440 HTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVI-AMMPGVLEVAAVGVPDEKS 498
Query: 653 GPEQLTIVVVFKDSNYTPPDLN-QLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKV 711
G E + +V+V KD T D+ R + Q ++ K LP+T K+
Sbjct: 499 G-EIVKVVIVKKDPALTAEDVKAHARANLTGYKQPRIIEFRK--------ELPKTNVGKI 549
Query: 712 MRRVLR 717
+RR LR
Sbjct: 550 LRRELR 555
|
Length = 560 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 52/186 (27%), Positives = 70/186 (37%), Gaps = 21/186 (11%)
Query: 534 GCKLFILGNDGCPIPQNVPGMGELALSPLIFGASST---LLNANHYDVYFSGMPSRNGQI 590
G + IL DG P+P GEL +I G + L N F GQ
Sbjct: 280 GLRALILDEDGRPVPPG--EEGEL----VIAGPQVSPGYLNNPEKTAKAF---FQDEGQR 330
Query: 591 LRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650
R GD+ G GR D + L G ++ EIE A+ V E + V P
Sbjct: 331 WYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRAL-PGVEEAVVLPV-PK 388
Query: 651 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNK 710
+L VV K+ D L+ ++K+L P V L SLP A K
Sbjct: 389 GEKVVRLVAFVVGKEG---ALDTKALK----KELKKRLPPYMIPRRFVYLDSLPLNANGK 441
Query: 711 VMRRVL 716
+ R+ L
Sbjct: 442 IDRKAL 447
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 610 GRADDTMNLGGIKVSSVEIERICNAVD----SNVLETAAIGVPPPDGGPEQLTIVVVFKD 665
GRA D + + G +IER+ V+ V AA GV E++ I V ++
Sbjct: 388 GRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRV---AACGVYDEKEQSEEVVIFVEYRQ 444
Query: 666 SNYTPPDLNQLRMSFNSAVQKKLNPLFK--VSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723
L+ +++ +N + HV+P+ S+P+T + K+ R L +Q
Sbjct: 445 ------SLDDF-TPLALKIKRHVNKKMGLNIDHVIPVRSIPKTTSGKIQRYKLAQQFLNG 497
Query: 724 D 724
D
Sbjct: 498 D 498
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
++T EL+ +A L ALG G +A+ + ++ LA + AG V + S
Sbjct: 15 DTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPS 74
Query: 269 FASLEISARLRISKAKAIFTQD 290
+ I+ L + A+
Sbjct: 75 QPAERIAKILEAAGPAALVADP 96
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 116/544 (21%), Positives = 217/544 (39%), Gaps = 76/544 (13%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
K++T E+ + A AL +LGL KG + + +P ++ L I+ AG + +
Sbjct: 54 KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPT 113
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
EI + + AK I T D Y +V P+ ++ K
Sbjct: 114 ALESEIKKQAEAAGAKLIVTNDT---------NYGKVKGLGLPVIVLGEEKIE------- 157
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEA-FTNILFSSGTTGEPKAIPWTNATPFKAAA 387
G ++W + LE + + + E+ ++ + FSSGTTG K + T+ A
Sbjct: 158 -GAVNWKELLEAADRAGDT--SDNEEILQTDLCALPFSSGTTGISKGVMLTHRN---LVA 211
Query: 388 DAWCHMDIRKADIVAWPTNLGWMMGPW--------LVYASLLNGASIALYNGSPLGSGFA 439
+ + +++ LG + P+ + A+L N + + + L + F
Sbjct: 212 NLCSSLFSVGPEMIGQVVTLGLI--PFFHIYGITGICCATLRNKGKVVVMSRFELRT-FL 268
Query: 440 KFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 499
+ +V+ +VP I+ ++ +D S ++ A+ + L A +
Sbjct: 269 NALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFP 328
Query: 500 --PVIEYCGGTEIGGGFIT------GSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNV 551
V E G TE +T G + ++ F P + K FI + G +P+N
Sbjct: 329 GVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVK-FIDPDTGRSLPKNT 387
Query: 552 PGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHG- 610
P GEL + S + +Y+ + + GD+ GY G
Sbjct: 388 P--GELCV-------RSQCVMQGYYNNKEETDRTIDEDGWLHTGDI------GYIDDDGD 432
Query: 611 -----RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD--GGPEQLTIVVVF 663
R + + G +V+ E+E I S +E AA+ VP PD G VV+
Sbjct: 433 IFIVDRIKELIKYKGFQVAPAELEAILLTHPS--VEDAAV-VPLPDEEAGEIPAACVVIN 489
Query: 664 KDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723
+ + D+ ++ N A KK+ +V V S+P++ + K+MRR+L++++ +
Sbjct: 490 PKAKESEEDILNF-VAANVAHYKKV----RVVQFV--DSIPKSLSGKIMRRLLKEKMLSI 542
Query: 724 DQNS 727
++ +
Sbjct: 543 NKAN 546
|
Length = 546 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 33/167 (19%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
K +T EL V VA L ALG+ KG +A+ M + +++ A+ G + V +
Sbjct: 26 KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTR 85
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
+ E+ +L ++ K + T D D +A L I K + M
Sbjct: 86 LSREELLWQLDDAEVKCLITDD----------------DFEAKLIPGISVKFAEL-MNGP 128
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAI 375
+ + EF ++ I+++SGTTG+PK +
Sbjct: 129 KEEAEI-----------QEEF-----DLDEVATIMYTSGTTGKPKGV 159
|
Length = 483 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 82/393 (20%), Positives = 138/393 (35%), Gaps = 82/393 (20%)
Query: 361 NILFSSGTTGEPKAIPWTNATPFKAA---ADAWCH---MDIRKADIVAWPTNLGWMMGP- 413
+L++ GTTG PK + W F+ D ++ + A ++
Sbjct: 7 YMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACP 66
Query: 414 -------WLVYASLLNGASIALYNGSPLGSGFAKF--------VQDAKVTMLGVV----- 453
WL ++L G ++ L KF V+ +V L +V
Sbjct: 67 LMHGAGQWLALSALFAGGTVVLLPDD-------KFDPDRVWRTVEKHRVNTLVIVGDAFA 119
Query: 454 -PSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV---DEYLWLMGRALYKPVIEYCGGTE 509
P ++ ++ YD SS+R S+G + L L+ +++ G +E
Sbjct: 120 RP-LLEALEAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLA---LVDALGASE 172
Query: 510 IGGGFITGSLLQAQSLA-AFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLI-FGAS 567
GGG GS + A A +G +L DG +P +G +A + G
Sbjct: 173 TGGG---GSSVSRAGGASATGKFELGPDTVVLDEDGSEVPPGSGEVGWIARGGRVPLG-- 227
Query: 568 STLLNANHYDVYFSGMPSRNGQILRR--------HGDVFERTSGGYYRAHGRADDTMNLG 619
Y+ P + + R GD + G GR +N G
Sbjct: 228 -----------YY-KDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTG 275
Query: 620 GIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMS 679
G KV E+E A V + +GVP G +V V + DL +LR
Sbjct: 276 GEKVFPEEVEEALKAHPD-VADALVVGVPDERWGQR---VVAVVQLRAGAGLDLAELR-- 329
Query: 680 FNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKV 711
++ L +K+ +V + ++PR + K
Sbjct: 330 --DHCRQHLAG-YKLPRAIVVVDTVPRAPSGKA 359
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 43/184 (23%)
Query: 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVI 251
D + E +T +L+ + +A +++L L S I + M+ +
Sbjct: 17 DFPAYDYLGE--------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLAT 68
Query: 252 YLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP 311
+L V AG+ + + S + I + ++K I + + IP VI
Sbjct: 69 FLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEILGIP----VITLDEL 124
Query: 312 LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTN--ILFSSGTT 369
I A G+ + + V+ N I+F+SGTT
Sbjct: 125 KD--IFATGNPYDF---------------------------DHAVKGDDNYYIIFTSGTT 155
Query: 370 GEPK 373
G+PK
Sbjct: 156 GKPK 159
|
Length = 503 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 26/78 (33%), Positives = 35/78 (44%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
++ ELR + VA L LG+ G +A +P VV LA G I V + +F
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 271 SLEISARLRISKAKAIFT 288
I RL S AK + T
Sbjct: 61 PKAIEYRLGHSGAKVVVT 78
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 60/276 (21%), Positives = 98/276 (35%), Gaps = 28/276 (10%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL-AIVLAGYIVVSIAD 267
+ ++ EL +A L LG+ G + + +P NV I A++ G V
Sbjct: 52 RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLP-NVAEFYITFFALLRLGVAPVLALP 110
Query: 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVID--AQAPLAIVIPAKGSSFSM 325
S + E+ A +A LI+ +R P A + AK +
Sbjct: 111 SHRASELGAFASQIEAAL-----LIV---------ARQHSGFDYRPFARELVAKHPTLRH 156
Query: 326 KLRDGDISWLDFLE-RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT--- 381
+ G+ LE + A S GTTG PK IP T+
Sbjct: 157 VIVAGEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYY 216
Query: 382 PFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKF 441
+A+A+ C D + + A P + + L G ++ L +P S F
Sbjct: 217 SVRASAEI-CGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVL---APDPSPELCF 272
Query: 442 --VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 475
++ VT+ +VP + W + D SS+R
Sbjct: 273 PLIERHGVTVTALVPPLASLWLQAAEWERADLSSLR 308
|
Length = 542 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 207 PVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIA 266
+S+T EL A +A AL ALGL G +A+ P + VV+YLAI AG + V +
Sbjct: 8 GGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLN 67
Query: 267 DSFASLEISARLRISKAKAIFTQDLII 293
S+ + E++ L S+ + LII
Sbjct: 68 PSYPAAELAYILSDSQPSLLVDPALII 94
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 64/269 (23%), Positives = 104/269 (38%), Gaps = 56/269 (20%)
Query: 201 EGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSV---VIYLAIVL 257
E G + +T E + V +A AL LGLD G + I ++ NS+ ++ LA +
Sbjct: 72 EPGHG-QWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMI---LSGNSIEHALMTLAAMQ 127
Query: 258 AGYIV--VSIADSFASLEISARLR----ISKAKAIFTQDLIIRGDKSIPLYSR---VIDA 308
AG VS A S S + A+L+ + K + +F Q ++R +D
Sbjct: 128 AGVPAAPVSPAYSLMSHDH-AKLKHLFDLVKPRVVFAQSG--------APFARALAALDL 178
Query: 309 QAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFT-----NIL 363
+ + G I+ + F + AAV + A T L
Sbjct: 179 LDVTVVHVTGPG---------EGIASIAFADLAATPPT---AAVAAAIAAITPDTVAKYL 226
Query: 364 FSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAW-PTNLGWMMGPW-------- 414
F+SG+TG PKA+ T A+ +R + P +L WM PW
Sbjct: 227 FTSGSTGMPKAVINTQRM---MCANIAMQEQLRPREPDPPPPVSLDWM--PWNHTMGGNA 281
Query: 415 LVYASLLNGASIALYNGSPLGSGFAKFVQ 443
L G ++ + +G PL F + ++
Sbjct: 282 NFNGLLWGGGTLYIDDGKPLPGMFEETIR 310
|
Length = 624 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+T ELRA V VA L+A G+ +A+ P +V++V+ LA+ G + +
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDG 330
EI+ +LI RG+ + + VI A + I GS + L G
Sbjct: 89 PAEIA--------------ELIKRGE----MTAAVIAVDAQVMDAIFQSGSGVRV-LALG 129
Query: 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAI 375
D+ L E E+ EQP AF + ++SGTTG PK
Sbjct: 130 DLVGLGEPESAGPPIEDPPREPEQP--AF--VFYTSGTTGLPKGA 170
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 44/207 (21%), Positives = 69/207 (33%), Gaps = 41/207 (19%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSI--- 265
+++T L V +A L LGL +G +AI + + +V LAG + V I
Sbjct: 24 RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPL 83
Query: 266 ----------ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL-AI 314
AD L +++ R+ DL+ +I P A
Sbjct: 84 LKAEQVAHILADCNVRLLVTSSERL---------DLLHPALPGCHDLRTLIIVGDPAHAS 134
Query: 315 VIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPV--EAFTNILFSSGTTGEP 372
SW KL A PV IL++SG+TG P
Sbjct: 135 EGHPGEEP---------ASW-------PKLLALGDADPPHPVIDSDMAAILYTSGSTGRP 178
Query: 373 KAIPWTNATPFKAAADAWCHMDIRKAD 399
K + ++ A +++ R D
Sbjct: 179 KGVVLSHRNLVAGAQSVATYLENRPDD 205
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 604 GYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVF 663
G GRADD ++ GG+ V +E + V + A G+P G +V
Sbjct: 247 GVLTVLGRADDAISTGGLTVLPQVVEAALATHPA-VADCAVFGLPDDRLGQR---VVAAV 302
Query: 664 KDSNYTPPDLNQLRMSFNSAVQKKLNP--LFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721
P L LR + V + L+ + HVV LPR KV RR L ++ A
Sbjct: 303 VGDGGPAPTLEALR----AHVARTLDRTAAPRELHVVD--ELPRRGIGKVDRRALVRRFA 356
Query: 722 Q 722
Sbjct: 357 G 357
|
Length = 358 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 5/129 (3%)
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
R GDV T G+ H RA D + GG + S ++E A V+E A IG P
Sbjct: 433 RTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPE-VVECAVIGYPDDKW 491
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712
G L + V+ T +LR + + P + + + +T+ K
Sbjct: 492 GERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLP----EYWTFVDEIDKTSVGKFD 547
Query: 713 RRVLRKQLA 721
++ LR+ LA
Sbjct: 548 KKDLRQHLA 556
|
Length = 576 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 26/212 (12%)
Query: 176 VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGL-PVKSMTLKELRAEVWLVAYALNALGLDK 234
+ A + S + ++ D+ ++ W DG + P T KE+ EV + AL A G +
Sbjct: 41 ITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEP 100
Query: 235 GSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIR 294
GS + I +V A I V + D+ + + ++ +F QD I+
Sbjct: 101 GSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK 160
Query: 295 GD-----------KSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRK 343
K+I ++ V + ++ K S +K SW+DFL ++
Sbjct: 161 ELLEPDCKSAKRLKAIVSFTSVTEEES-------DKASQIGVKT----YSWIDFLHMGKE 209
Query: 344 LKENEFAAVEQPVEAFTNILFSSGTTGEPKAI 375
+P++ T I+++SGT+G+PK +
Sbjct: 210 NPSETNPP--KPLDICT-IMYTSGTSGDPKGV 238
|
Length = 660 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 20/154 (12%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISK 282
VA L+ LG+ +G + + +P V+ +L G + + + EI+ + + S
Sbjct: 63 VAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASG 122
Query: 283 AKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVR 342
AK I TQ + DK + + + L +++ D
Sbjct: 123 AKLIITQSCYV--DK-------LKGLAEDDGVTVVTIDDPPEGCLHFSELTQAD------ 167
Query: 343 KLKENEFAAVE-QPVEAFTNILFSSGTTGEPKAI 375
ENE VE P + + +SSGTTG PK +
Sbjct: 168 ---ENELPEVEISPDDVVA-LPYSSGTTGLPKGV 197
|
Length = 537 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
R GDV GY + R D + + G V EIE + A VLE AA+GVP
Sbjct: 438 RTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVV-ASHPGVLEVAAVGVPDEHS 496
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712
G E + + VV KD T D+ +++L + V LP+T K++
Sbjct: 497 G-EAVKLFVVKKDPALTEEDVKAF-------CKERLTNYKRPKFVEFRTELPKTNVGKIL 548
Query: 713 RRVLR 717
RR LR
Sbjct: 549 RRELR 553
|
Length = 557 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 60/238 (25%), Positives = 92/238 (38%), Gaps = 47/238 (19%)
Query: 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT-QDLI---- 292
I I MP + + + Y A +L+G I V I S E++A + + T + L+
Sbjct: 70 IGIMMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLA 129
Query: 293 -IRGDKSIPLYSRVIDAQAPLAIVIPA---KGSSFSMKLRDGDISWLDFLERVRKLKENE 348
G+ DA+ P +++ K SF K R G + F +R
Sbjct: 130 QTHGE----------DAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFEWLMRW----- 174
Query: 349 FAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLG 408
F ++ E ILF+SGT PK +P T+A ++ D+
Sbjct: 175 FGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDV-------- 226
Query: 409 WMMG---PWLVYA-------SLLNGASIAL-YNGSPL-GSGFAKFVQDAKVTMLGVVP 454
MM P+ Y LL+G + YN PL + + +AKVT LG P
Sbjct: 227 -MMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYN--PLYPKKIVEMIDEAKVTFLGSTP 281
|
Length = 539 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GDV G+ R+ D + GG +SSVE+E + VLETA + +P P G
Sbjct: 425 GDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKY-PKVLETAVVAMPHPTWGE 483
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQ--KKLNPLFKVSH-VVPLPSLPRTATNKV 711
VV+ K +++L ++ ++ P F VV L LP+ K+
Sbjct: 484 TPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKI 543
Query: 712 MRRVLR 717
++ LR
Sbjct: 544 LKPKLR 549
|
Length = 579 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 61/222 (27%), Positives = 86/222 (38%), Gaps = 37/222 (16%)
Query: 506 GGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGM----GELALSP 561
G TE+G G + + P GC + IL + P+ V G GELA +
Sbjct: 325 GSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTR 384
Query: 562 LIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGI 621
G +++ GM S GD+ + G GR DD + GG
Sbjct: 385 YTDGGGKAVVD---------GMTST--------GDMGYLDNAGRLFIVGREDDMIISGGE 427
Query: 622 KVSSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMS 679
V +E NA+ ++ V + A IGVP G VV+ S D QLR
Sbjct: 428 NVYPRAVE---NALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGV---DAAQLRDY 481
Query: 680 FNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721
V + P + ++V S+PR T K VLRK+L
Sbjct: 482 LKDRVSRFEQP--RDINIVS--SIPRNPTGK----VLRKELP 515
|
Length = 516 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
Query: 210 SMTLKELRAEVWLVAYAL-NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
S++ EL+ V +A L + +G+ +G + + +P +V VI+LA++ G IV ++ S
Sbjct: 66 SISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPS 125
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
+ EI R+ FT + L +PL +P G +
Sbjct: 126 SSLGEIKKRVVDCSVGLAFTSP-----ENVEKL--------SPLG--VPVIGVPENYDFD 170
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPV---EAFTNILFSSGTTGEPKAIPWTN 379
I + F +L + +F V +PV + I++SSGTTG K + T+
Sbjct: 171 SKRIEFPKF----YELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTH 220
|
Length = 560 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.97 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.96 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.94 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.9 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.86 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.68 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.65 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.34 | |
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 99.01 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.83 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.32 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.58 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.48 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.41 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.29 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 94.17 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 84.29 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 82.4 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 80.08 |
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-102 Score=904.29 Aligned_cols=719 Identities=70% Similarity=1.168 Sum_probs=619.0
Q ss_pred cccccccccChHHHHHcCCChHHHHHHHHHHHHHHHhcCCCCccchHHHHHhhcCCCCCCchhheeeeeecCCC-CCC--
Q 004815 4 YNYKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSFHQLLYYGCYKDF-GPD-- 80 (729)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~hq~~Pfe~lv~~l~~~r~~~~~~~~f~~~~~~~-~~~-- 80 (729)
.-+|.+|-|+..||++.|+.+++++.|.++|+++..++..+....+-..--+-|+|...+++||+|+.-++.++ ++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (728)
T PLN03052 3 MAGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRAGASPPSIWRRISQSLLTPSHPFALHQLMYYSCYKNWDSDTLG 82 (728)
T ss_pred cccCChhhcCHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhcCCCCCccHHHHhhhhcccCCCccccC
Confidence 35789999999999999999999999999999999988767777888777788899999999999999998888 222
Q ss_pred -CCCccCChhhhhhCcHHHHHHHhccccccCCCCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCC
Q 004815 81 -PPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNG 159 (729)
Q Consensus 81 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 159 (729)
.++|.|+++....++|..++++.+..+....|+..+.+|+.|+++++++++.||..+++.+.+.|.+++.++++...
T Consensus 83 ~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~-- 160 (728)
T PLN03052 83 PPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSD-- 160 (728)
T ss_pred CCCCCCCChhhcccchHHHHHHHhhhhhhHHhhCCChhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCceeecCCC--
Confidence 58999999988899999999987655544557777889999999999999999999999998999999999986521
Q ss_pred CCCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004815 160 ENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIA 239 (729)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Va 239 (729)
...+..+||+++.+|++++||++++.++||++|+++.++++.++..+++||+||+++++++|++|+++|+++||+|+
T Consensus 161 ---~~~~~~~wf~g~~ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVa 237 (728)
T PLN03052 161 ---ESNPGGQWLPGAVLNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIA 237 (728)
T ss_pred ---CCCCCCEECCCCEeEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 12455789999999999999999877899999999987632233457899999999999999999999999999999
Q ss_pred EECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCC
Q 004815 240 IDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAK 319 (729)
Q Consensus 240 i~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 319 (729)
++++|++++++++|||+++|++++|++|+++.+++.+++++++++++|+++...++++.++....+.+.....++++...
T Consensus 238 i~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~ 317 (728)
T PLN03052 238 IDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPAD 317 (728)
T ss_pred EEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999988888888888777776666666666543
Q ss_pred CCCcccccCCCCcCHHHHHHHhhccc-cCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCC
Q 004815 320 GSSFSMKLRDGDISWLDFLERVRKLK-ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKA 398 (729)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 398 (729)
+.........+...|++++....... +........++++++||+|||||||+||||+++|++++..+......++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~ 397 (728)
T PLN03052 318 GKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKG 397 (728)
T ss_pred CCccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCC
Confidence 32111111123567887765422100 11122223467999999999999999999999999988877777777899999
Q ss_pred CEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEE
Q 004815 399 DIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 478 (729)
Q Consensus 399 d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~ 478 (729)
|+++++++++|+++.+.++++|+.|++++++++.+++..++++|++++||++.++|++++.|.+.......++++||.++
T Consensus 398 d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~ 477 (728)
T PLN03052 398 DIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFG 477 (728)
T ss_pred cEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEE
Confidence 99999999999999998999999999999999877778899999999999999999999999887545567889999999
Q ss_pred eecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEE
Q 004815 479 STGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELA 558 (729)
Q Consensus 479 ~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~ 558 (729)
+|||+++++...|+...++..+++|.||+||++++++...+..+...+++|+|++|++++|+|++|+++|.|+++.|||+
T Consensus 478 s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~ 557 (728)
T PLN03052 478 STGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELA 557 (728)
T ss_pred ecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEE
Confidence 99999999998888776665689999999999876554444444556789999999999999999999999875569999
Q ss_pred eeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCC
Q 004815 559 LSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN 638 (729)
Q Consensus 559 v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~ 638 (729)
+.+.+++...++++++.+..||..+|..+|++||+|||+|++++||+++|+||+||+||++|+||++.|||++|+..||+
T Consensus 558 v~~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~ 637 (728)
T PLN03052 558 LFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADES 637 (728)
T ss_pred EeCCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCC
Confidence 98887777666777777888998888888889999999999999999999999999999999999999999999547999
Q ss_pred eeeeEEEeecCCCCCceeEEEEEEec--CCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHH
Q 004815 639 VLETAAIGVPPPDGGPEQLTIVVVFK--DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 716 (729)
Q Consensus 639 V~~a~Vv~~~~~~~g~~~l~a~vv~~--~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L 716 (729)
|.||+|++++++..|++.+++||+++ + +. ..+.++|+++++++|+++|+++++|+.|+++++||+|+||||+|++|
T Consensus 638 V~eaaVvg~~d~~~g~e~~~afVvl~~~~-g~-~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~L 715 (728)
T PLN03052 638 VLETAAIGVPPPGGGPEQLVIAAVLKDPP-GS-NPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVL 715 (728)
T ss_pred cceEEEEeeecCCCCcEEEEEEEEEecCC-CC-CCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHH
Confidence 99999999999876658899999987 4 44 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCC
Q 004815 717 RKQLAQLDQNSKL 729 (729)
Q Consensus 717 ~~~~~~~~~~~~~ 729 (729)
++.+.+..++|||
T Consensus 716 r~~~~~~~~~~~~ 728 (728)
T PLN03052 716 RQQLAQELSRSKL 728 (728)
T ss_pred HHHHHhhhhccCC
Confidence 9999987779886
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-86 Score=719.59 Aligned_cols=515 Identities=29% Similarity=0.464 Sum_probs=449.6
Q ss_pred CcCCCCcchHHhhhhccccC-CCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCH
Q 004815 169 QWLPGAFVNPAKNCLSVNSK-RSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNV 246 (729)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~-~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~ 246 (729)
+||.++.+|.+++|++++.. ..+|++|+++.++. +..+++||+||.++++++|+.|++ .|+ +||||+|+||+.+
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~~~~~~~~aii~~~e~---~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~p 76 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFDGED---GLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSP 76 (528)
T ss_pred CCcCCceeechhhhhhhhhhccCCCceEEEEEcCC---CCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCH
Confidence 49999999999999999985 45799999999772 122799999999999999999987 568 9999999999999
Q ss_pred HHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccc
Q 004815 247 NSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMK 326 (729)
Q Consensus 247 ~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 326 (729)
+.+++||||+|+||+++|+.+.++++.++++++++++++||++++..++++..+....+.+.+.. ++++...+
T Consensus 77 e~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~-~iv~~r~~------ 149 (528)
T COG0365 77 EAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS-VVVVPRLG------ 149 (528)
T ss_pred HHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc-eEEecccc------
Confidence 99999999999999999999999999999999999999999999999999988888877776655 44443321
Q ss_pred cCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHH-HHHhhCCCCCCCEEEEcc
Q 004815 327 LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA-DAWCHMDIRKADIVAWPT 405 (729)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~ 405 (729)
.+|.++...... ..+..+.+++|++||+|||||||+||||+|+|++++.... .....+++.++|++++.+
T Consensus 150 -----~~~~~~~~~~~~----~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~a 220 (528)
T COG0365 150 -----LWYDEAVEKASE----KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSS 220 (528)
T ss_pred -----ccHHHHhhccCC----CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCC
Confidence 667777665432 3344558899999999999999999999999998665544 444578888999999999
Q ss_pred CcchhhhHH-HHHHHhhcCceEEEeCCCCC--hhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecC
Q 004815 406 NLGWMMGPW-LVYASLLNGASIALYNGSPL--GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGE 482 (729)
Q Consensus 406 ~~~~~~~~~-~i~~~L~~G~~lvl~~~~~~--~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe 482 (729)
+++|.+|++ .++++|++|++++++++.++ +.+++++|++++||+++++|+.+++|++.....+.++++||.+.++||
T Consensus 221 d~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGE 300 (528)
T COG0365 221 DPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGE 300 (528)
T ss_pred CchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCC
Confidence 999999996 49999999999999998775 789999999999999999999999999987666788999999999999
Q ss_pred CCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeecc
Q 004815 483 ASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPL 562 (729)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~ 562 (729)
+|+++.++|+.+.++ +++.+.||+||++.++....+ +...++.|+|+||+++.|+|++|+++++|+ |+|++...
T Consensus 301 PLnpe~~~w~~~~~g-~~i~d~~gqTEtg~~~~~~~~--~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~---G~Lvi~~~ 374 (528)
T COG0365 301 PLNPEAFEWFYSALG-VWILDIYGQTETGMGFIAGRP--PVKNGSSGLPLPGYAVRRVDDEGNPVPPGV---GELVVRLP 374 (528)
T ss_pred CCCHHHHHHHHHHhC-CCEeccccccccCccccCCCC--CcCCCCCCCCCCCceeEEECCCCCcCCCCc---eEEEEeCC
Confidence 999999999998876 999999999999976665555 445555599999999999999999999997 99999654
Q ss_pred ccCCCcc-cccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeee
Q 004815 563 IFGASST-LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLE 641 (729)
Q Consensus 563 ~~~~~~~-~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~ 641 (729)
..+...+ +++++.+.+.|.. . ||.|||.+++|+||+++|+||+||+||+.|+||.+.|||++|. +||.|.|
T Consensus 375 ~p~~~~~~w~d~er~~~~y~~------~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~-~hP~VaE 446 (528)
T COG0365 375 WPGMALTYWNDPERYKEAYFG------R-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLL-AHPAVAE 446 (528)
T ss_pred CchhhhhhhCCHHHHHHHHhh------c-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHH-hCcceee
Confidence 3333333 3455555443332 1 9999999999999999999999999999999999999999996 9999999
Q ss_pred eEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHH
Q 004815 642 TAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721 (729)
Q Consensus 642 a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~ 721 (729)
|+||+++|+..| +.++|||++++ |. ..+ +|++.|++++++.+.++++|+.|.++++||+|.||||.|++|++.+.
T Consensus 447 aAvVg~pd~~kg-~~v~afVvL~~-g~-~~~--~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 447 AAVVGVPDPGKG-QIVLAFVVLAA-GV-EPN--ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred eEEEeccCCCCC-cEEEEEEEecC-CC-ChH--HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHh
Confidence 999999999998 88999999999 76 344 99999999999999999999999999999999999999999999987
Q ss_pred h
Q 004815 722 Q 722 (729)
Q Consensus 722 ~ 722 (729)
+
T Consensus 522 ~ 522 (528)
T COG0365 522 K 522 (528)
T ss_pred h
Confidence 4
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-87 Score=886.85 Aligned_cols=651 Identities=19% Similarity=0.205 Sum_probs=529.9
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCC---CCchhheeeeeecCCCCC-----C-CCCcc
Q 004815 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDL---PFSFHQLLYYGCYKDFGP-----D-PPAWI 85 (729)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r---~~~~~~~~f~~~~~~~~~-----~-~~~~~ 85 (729)
.+++++..+.+.+|.++|++++++.++ +||++||++|++.|++.| ++|+||+||+.++..... + .....
T Consensus 1406 tlplR~~~~~~~t~~~~l~~v~~~~~~a~~hq~~p~~~i~~~l~~~r~~~~~pLFq~~~~~~~~~~~~~~~~~~~~~~~~ 1485 (3956)
T PRK12467 1406 TQVLRAEVDGQASFQQLLQQVKQAALEAQAHQDLPFEQLVEALQPERSLSHSPLFQVMFNHQRDDHQAQAQLPGLSVESL 1485 (3956)
T ss_pred eeEEEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHHhcccccCCCCCceeEEEEeecccccccccCCCceeEee
Confidence 356778888899999999999999888 999999999999999988 478999999888754311 0 00001
Q ss_pred CChhhhhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCC-CC
Q 004815 86 PDPEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGEN-HL 163 (729)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 163 (729)
......++|||++.+.+.++++...+ |++ ++|++.+++++.++|.++|+++. +.|+..+....+..+ +.
T Consensus 1486 ~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~----~~p~~~~~~l~~~~~~~~ 1556 (3956)
T PRK12467 1486 SWESQTAQFDLTLDTYESSEGLQASLTYAT-----DLFEASTIERLAGHWLNLLQGLV----ADPERRLGELDLLDEAER 1556 (3956)
T ss_pred ecCCcccccceEEEEEecCCeEEEEEEEeC-----CcCCHHHHHHHHHHHHHHHHHHh----hCccCceeeccccchHHh
Confidence 11124578999998877777888888 988 99999999999999999999973 445555555444333 33
Q ss_pred CCCCCCcCCCCcc----hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004815 164 SNPGGQWLPGAFV----NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIA 239 (729)
Q Consensus 164 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Va 239 (729)
...+..|+..... ...+++|+++++++||++|+++.++ ++||+||+++++++|++|.++|+++|++|+
T Consensus 1557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~ 1628 (3956)
T PRK12467 1557 RQILEGWNATHTGYPLARLVHQLIEDQAAATPEAVALVFGEQ--------ELTYGELNRRANRLAHRLIALGVGPEVLVG 1628 (3956)
T ss_pred hhhHHhhcCCccCCCccccHHHHHHHHHHhCCCCeEEEeCCc--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 3344557654322 3467788899999999999999877 999999999999999999999999999999
Q ss_pred EECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCC
Q 004815 240 IDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAK 319 (729)
Q Consensus 240 i~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 319 (729)
|+++||+++++++|||+|+|++|+||||.+|.+|+.+++++++++++|++....... + .......+.+...
T Consensus 1629 l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~---~------~~~~~~~~~~~~~ 1699 (3956)
T PRK12467 1629 IAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARL---P------LPDGLRSLVLDQE 1699 (3956)
T ss_pred EEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhC---c------cccCCcEEEeccc
Confidence 999999999999999999999999999999999999999999999999987532110 0 0001112222110
Q ss_pred CCCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCC
Q 004815 320 GSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKAD 399 (729)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d 399 (729)
. +.... .....+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|
T Consensus 1700 ~---------------~~~~~----~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d 1760 (3956)
T PRK12467 1700 D---------------DWLEG----YSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAAD 1760 (3956)
T ss_pred c---------------chhcc----CCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCccc
Confidence 0 00000 0111223345689999999999999999999999999999999998999999999
Q ss_pred EEEEccCcchhhhHHHHHHHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEE
Q 004815 400 IVAWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 477 (729)
Q Consensus 400 ~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v 477 (729)
++++++|++|+++++++|.+|++|+++++.+.. .++..+.+.|++++||++.++|++++.|.+... ....+++||.+
T Consensus 1761 ~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v 1839 (3956)
T PRK12467 1761 VVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRV 1839 (3956)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEE
Confidence 999999999999999999999999999998643 367889999999999999999999999987422 23457899999
Q ss_pred EeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcc----cccccccccCCCCCcEEEEEcCCCCccCCCCCc
Q 004815 478 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPG 553 (729)
Q Consensus 478 ~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~g 553 (729)
++|||+++++..++|.+.+++.+++|.||+||+++.++..... ......+||+|++|++++|+|++++++|.|++
T Consensus 1840 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~- 1918 (3956)
T PRK12467 1840 VCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVA- 1918 (3956)
T ss_pred EEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCc-
Confidence 9999999999999988887778899999999999766543321 11235689999999999999999999999997
Q ss_pred eeEEEeeccccCCCcccccccccccccccccCC-CCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHH
Q 004815 554 MGELALSPLIFGASSTLLNANHYDVYFSGMPSR-NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632 (729)
Q Consensus 554 iGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~-~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L 632 (729)
|||+|++..+..+ |+++++.|+++|+.+|+. .|.+||||||+|+|++||+|+|+||+|+|||++|+||+|+|||++|
T Consensus 1919 -GEl~i~G~~v~~G-Yl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l 1996 (3956)
T PRK12467 1919 -GELYLGGVGLARG-YLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARL 1996 (3956)
T ss_pred -eEEEecccccccc-ccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHH
Confidence 9999977665544 467899999999999975 4789999999999999999999999999999999999999999999
Q ss_pred hcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCC---CChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCC
Q 004815 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP---PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATN 709 (729)
Q Consensus 633 ~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~---~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~G 709 (729)
. .||+|.+|+|++.+ ..++ ++++|||+... +... .......+.+++++++.||.||+|+.|+++++||+|+||
T Consensus 1997 ~-~~p~V~~a~vv~~~-~~~~-~~lva~vv~~~-~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~G 2072 (3956)
T PRK12467 1997 R-EQGGVREAVVIAQD-GANG-KQLVAYVVPTD-PGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNG 2072 (3956)
T ss_pred H-hCCCcceEEEEEec-CCCC-cEEEEEEEecC-cccccccccccccHHHHHHHHHhhCchhhCchhhhhhhcCCCCCCC
Confidence 5 99999999999986 3344 78999999875 2200 011224456777899999999999999999999999999
Q ss_pred hhhHHHHHHHH
Q 004815 710 KVMRRVLRKQL 720 (729)
Q Consensus 710 KidR~~L~~~~ 720 (729)
||||++|++..
T Consensus 2073 Kidr~~L~~~~ 2083 (3956)
T PRK12467 2073 KLDRKALPAPD 2083 (3956)
T ss_pred CcchhhCCCCc
Confidence 99999998754
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-83 Score=742.14 Aligned_cols=585 Identities=21% Similarity=0.279 Sum_probs=473.7
Q ss_pred CCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCC--CCCC
Q 004815 116 ISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKR--SLDD 193 (729)
Q Consensus 116 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~pd~ 193 (729)
+++|+.++++++++++.||..+++.+ +.|.+++.++++.. ....+||+++.+|+++++|+++++. +||+
T Consensus 7 ~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~--------~~~~~wf~~~~~n~~~~~l~~~~~~~~~~~~ 77 (647)
T PTZ00237 7 PFDYENDSNYANSNPESFWDEVAKKY-VHWDKMYDKVYSGD--------EIYPDWFKGGELNTCYNVLDIHVKNPLKRDQ 77 (647)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhc-CeeeCCcccccCCC--------CCchhhCCCCeeeHHHHHHHHhhcccCCCCc
Confidence 35789999999999999999999997 69999999997532 2237899999999999999998854 7999
Q ss_pred eEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHH
Q 004815 194 IVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLE 273 (729)
Q Consensus 194 ~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~ 273 (729)
+|+++..+. .+..+++||+||.++++++|+.|+++||++||+|+|+++|++++++++|||+++|++++|+++.++.++
T Consensus 78 ~A~~~~~~~--~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~ 155 (647)
T PTZ00237 78 DALIYECPY--LKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKS 155 (647)
T ss_pred eEEEEEcCC--CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHH
Confidence 999986441 122468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEEecceecCCccccchhhHHhhcC------CcEEEEcCCCCC--c------ccccCCCCcCHHHHHH
Q 004815 274 ISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA------PLAIVIPAKGSS--F------SMKLRDGDISWLDFLE 339 (729)
Q Consensus 274 l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~--~------~~~~~~~~~~~~~~~~ 339 (729)
+.++|+++++++||+++...+..+.++....+.+... ..++++...+.. . .....++...|.+++.
T Consensus 156 l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (647)
T PTZ00237 156 LIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIK 235 (647)
T ss_pred HHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHh
Confidence 9999999999999998876666655554444433221 233333221100 0 0001123355777665
Q ss_pred Hhhcc-ccCccccccCCCCCeeEEEeccCCCCCCceEEeCCch-HHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHH
Q 004815 340 RVRKL-KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT-PFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (729)
Q Consensus 340 ~~~~~-~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~-l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~ 417 (729)
..... ...........+++++||+|||||||+||||+++|++ +++........++...+|++++.++++|+.+...++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~ 315 (647)
T PTZ00237 236 KIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLY 315 (647)
T ss_pred hhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHH
Confidence 32110 1111223456789999999999999999999999998 544433334556778899999999999998777788
Q ss_pred HHhhcCceEEEeCCCC-C----hhhHHHHHHHcCCcEEEecHHHHHHHHhcCC-----CCCCCCCCccEEEeecCCCCHh
Q 004815 418 ASLLNGASIALYNGSP-L----GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-----IDGYDWSSIRCFGSTGEASNVD 487 (729)
Q Consensus 418 ~~L~~G~~lvl~~~~~-~----~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~-----~~~~~l~sLr~v~~gGe~l~~~ 487 (729)
++|+.|++++++++.. . +..+++.|++++||++.++|++++.|++... ....++++||.+++||++++++
T Consensus 316 ~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~ 395 (647)
T PTZ00237 316 GSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEES 395 (647)
T ss_pred HHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHH
Confidence 9999999999988642 2 4679999999999999999999999987532 1345689999999999999999
Q ss_pred HHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeecccc-CC
Q 004815 488 EYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIF-GA 566 (729)
Q Consensus 488 ~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~-~~ 566 (729)
+.+++++.++ ++++|.||+||++++++..........+++|+|++|++++|+|++|++++.|+. |||++.+... +.
T Consensus 396 ~~~~~~~~~g-~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~--GEl~v~~p~~p~~ 472 (647)
T PTZ00237 396 IPEYIENKLK-IKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNEI--GEVAFKLPMPPSF 472 (647)
T ss_pred HHHHHHHhcC-CCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCCc--eEEEEeccCCchh
Confidence 9999987765 899999999999865443322222234789999999999999999999999986 9999964321 11
Q ss_pred -CcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEE
Q 004815 567 -SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAI 645 (729)
Q Consensus 567 -~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv 645 (729)
..|+++++.++++|...+ | ||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. .||.|.+|+|+
T Consensus 473 ~~gy~~~~~~~~~~f~~~~---g--~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~-~~p~V~eaavv 546 (647)
T PTZ00237 473 ATTFYKNDEKFKQLFSKFP---G--YYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSIL-KHPLVLECCSI 546 (647)
T ss_pred hCceeCCHHHHHHHHhCCC---C--EEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHH-hCCCceeeEEE
Confidence 124567777777776433 4 9999999999999999999999999999999999999999996 99999999999
Q ss_pred eecCCCCCceeEEEEEEecCCCCC--CCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 646 GVPPPDGGPEQLTIVVVFKDSNYT--PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 646 ~~~~~~~g~~~l~a~vv~~~~~~~--~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+++++..| +.++|||++++ +.. ..+.+++++.|++.++++|++|++|+.|+++++||+|+||||+|++|++++..
T Consensus 547 g~~~~~~g-~~~~a~Vv~~~-~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 623 (647)
T PTZ00237 547 GIYDPDCY-NVPIGLLVLKQ-DQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLND 623 (647)
T ss_pred eeEcCCCC-CEEEEEEEecc-CccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcC
Confidence 99998887 88999999885 210 24567888889999999999999999999999999999999999999999764
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-86 Score=881.74 Aligned_cols=642 Identities=15% Similarity=0.156 Sum_probs=526.4
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCCCCchhheeeeeecCCCCC------CCCCccC--C
Q 004815 18 EALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGP------DPPAWIP--D 87 (729)
Q Consensus 18 ~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~------~~~~~~~--~ 87 (729)
+++++..+++.+|.++|++++++.++ +||++||+++++.++.. ++|+|+.||..+|+.... ...+... .
T Consensus 2931 lp~r~~~~~~~~~~~~l~~v~~~~~~~~~h~~~~~~~i~~~~~~~-~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3009 (3956)
T PRK12467 2931 LPVIASPRAEQTVSDWLQQVQAQNLALREFEHTPLADIQRWAGQG-GEALFDSILVFENYPISEALKQGAPSGLRFGAVS 3009 (3956)
T ss_pred eeEEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHhhccC-CCCCcceEEEeecCCchhhhhccCCCCceeeccc
Confidence 57788889999999999999999888 99999999999999754 478999999998864310 0111111 1
Q ss_pred hhhhhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCC-C
Q 004815 88 PEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLS-N 165 (729)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 165 (729)
.....+|+|++.+.. ++++.+.+ |++ ++|++.+++++.++|..+|+++. +.|+..+...++..+++. .
T Consensus 3010 ~~~~~~~~l~l~~~~-~~~~~~~~~y~~-----~~~~~~~~~~~~~~~~~~l~~~~----~~p~~~~~~l~~l~~~~~~~ 3079 (3956)
T PRK12467 3010 SREQTNYPLTLAVGL-GDTLELEFSYDR-----QHFDAAAIERLAESFDRLLQAML----NNPAARLGELPTLAAHERRQ 3079 (3956)
T ss_pred ccccccCceEEEecc-CcceeEEEEech-----hhCCHHHHHHHHHHHHHHHHHHH----hCcCCchhhccCCCHHHHHH
Confidence 123467888887765 45677777 988 99999999999999999999973 445554555444433322 3
Q ss_pred CCCCcCCCCcc----hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 004815 166 PGGQWLPGAFV----NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAID 241 (729)
Q Consensus 166 ~~~~~~~~~~~----~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~ 241 (729)
....|+..... ....++|.++++++||++|+++.++ ++||+||+++++++|+.|.++|+++|++|+|+
T Consensus 3080 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~ 3151 (3956)
T PRK12467 3080 VLHAWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQ--------QLSYAELNRRANRLAHRLIAIGVGPDVLVGVA 3151 (3956)
T ss_pred HHHhhccCCCCCCccccHHHHHHHHHHhCCCcceEeeCCc--------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence 34567754322 3566788889999999999999887 99999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCC
Q 004815 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGS 321 (729)
Q Consensus 242 ~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 321 (729)
++|++++++++|||+|+|++||||||.+|.+++.+++++++++++|++........ .......+.+..
T Consensus 3152 ~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~---------~~~~~~~~~~~~--- 3219 (3956)
T PRK12467 3152 VERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLP---------APAGDTALTLDR--- 3219 (3956)
T ss_pred eCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcc---------cccCCceeeecc---
Confidence 99999999999999999999999999999999999999999999999875321100 000011111110
Q ss_pred CcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEE
Q 004815 322 SFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV 401 (729)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 401 (729)
..... .....+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|++
T Consensus 3220 ---------------~~~~~---~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~ 3281 (3956)
T PRK12467 3220 ---------------LDLNG---YSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRV 3281 (3956)
T ss_pred ---------------hhhcc---cCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEE
Confidence 00000 111222344578999999999999999999999999999999999999999999999
Q ss_pred EEccCcchhhhHHHHHHHhhcCceEEEeCCC-CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEee
Q 004815 402 AWPTNLGWMMGPWLVYASLLNGASIALYNGS-PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGST 480 (729)
Q Consensus 402 l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~-~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~g 480 (729)
++++|++|+.++++++.+|+.|+++++.++. .++..+++.|++++||++.++|++++.|++.. ...++++||.+++|
T Consensus 3282 l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~~~~~~lr~~~~g 3359 (3956)
T PRK12467 3282 LLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADCASLDIYVFG 3359 (3956)
T ss_pred EEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cccCCCCceEEEEe
Confidence 9999999999999999999999999998732 57889999999999999999999999998653 23457899999999
Q ss_pred cCCCCHhHHHHHHhccCCCCeeecccccccccccccCCccc----ccccccccCCCCCcEEEEEcCCCCccCCCCCceeE
Q 004815 481 GEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ----AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 556 (729)
Q Consensus 481 Ge~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGe 556 (729)
||++++++.+++.+.+++++++|.||+||+++.++...... .....+||+|++|++++|+|++++++|.|++ ||
T Consensus 3360 Ge~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~--GE 3437 (3956)
T PRK12467 3360 GEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVA--GE 3437 (3956)
T ss_pred cCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCC--ce
Confidence 99999999999988777788999999999997655433211 1234689999999999999999999999997 99
Q ss_pred EEeeccccCCCcccccccccccccccccC-CCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcC
Q 004815 557 LALSPLIFGASSTLLNANHYDVYFSGMPS-RNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAV 635 (729)
Q Consensus 557 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~-~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~ 635 (729)
|+|++..+..+ |+++++.|+++|+.+|+ .+|.|||||||+|+|++||+|+|+||+|+|||++|+||+|+|||++|. +
T Consensus 3438 L~i~G~~v~~G-Y~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~-~ 3515 (3956)
T PRK12467 3438 LYIGGVGLARG-YHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLL-Q 3515 (3956)
T ss_pred EEEcchhhhhh-ccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHh-h
Confidence 99977666554 47789999999999997 678899999999999999999999999999999999999999999995 9
Q ss_pred CCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHH
Q 004815 636 DSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRV 715 (729)
Q Consensus 636 ~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~ 715 (729)
||+|.+|+|++..+ ..+ ++++|||+... +. ....++ ++++++++||.||+|+.|+++++||+|+||||||++
T Consensus 3516 ~p~V~~a~v~~~~~-~~~-~~lva~v~~~~-~~-~~~~~~----l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~ 3587 (3956)
T PRK12467 3516 HPSVREAVVLARDG-AGG-KQLVAYVVPAD-PQ-GDWRET----LRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKA 3587 (3956)
T ss_pred CcccceEEEEEecC-CCC-cEEEEEEeCCC-CC-cccHHH----HHHHHhccCChhhCCCeeeeeccCCCCCCCccchhh
Confidence 99999999998754 344 78999999876 32 233344 455788999999999999999999999999999999
Q ss_pred HHHHHHh
Q 004815 716 LRKQLAQ 722 (729)
Q Consensus 716 L~~~~~~ 722 (729)
|++....
T Consensus 3588 L~~~~~~ 3594 (3956)
T PRK12467 3588 LPDPDAK 3594 (3956)
T ss_pred cCCCCcc
Confidence 9986543
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-82 Score=727.97 Aligned_cols=580 Identities=24% Similarity=0.373 Sum_probs=468.7
Q ss_pred CHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeEEE
Q 004815 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIR 197 (729)
Q Consensus 118 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~ 197 (729)
+|+.+++++++++..||..+++. +.|.+++.++++... ....+||.++..|.++++|+++++++|+++|++
T Consensus 2 ~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~~-------~~~~~wf~~~~~n~~~~~l~~~~~~~p~~~Al~ 72 (628)
T TIGR02316 2 RYEEFYQRSIEQPEAFWAEQARR--IDWQTPPQRILDYSN-------PPFARWFAGGRTNLCHNALDRHLDERGEQLALV 72 (628)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHh--CCeecCCcccccCCC-------CCcCccCCCCEeeHHHHHHHHHhCcCCCCeEEE
Confidence 57889999999999999999998 579999999875422 345789999999999999999998899999999
Q ss_pred EeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHH
Q 004815 198 WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277 (729)
Q Consensus 198 ~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~ 277 (729)
+.+. ..+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++
T Consensus 73 ~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~ 150 (628)
T TIGR02316 73 TVSS--ETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALR 150 (628)
T ss_pred EEcC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHH
Confidence 8542 12234589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecceecCCccccchhhHHhhc------CCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCcccc
Q 004815 278 LRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ------APLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAA 351 (729)
Q Consensus 278 l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (729)
+++++++++|+++...+.++.++....+.+.+ ...++++....... .........|.++..... ....+.
T Consensus 151 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~ 226 (628)
T TIGR02316 151 IDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM-RLIPGRDVDYAALRTQHE---DAQVPV 226 (628)
T ss_pred HHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCccccHHHHhhccc---cCCCCc
Confidence 99999999999987766666655554443321 22344443221110 001112345666544321 112223
Q ss_pred ccCCCCCeeEEEeccCCCCCCceEEeCCchHH-HHHHHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEEEe
Q 004815 352 VEQPVEAFTNILFSSGTTGEPKAIPWTNATPF-KAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIALY 429 (729)
Q Consensus 352 ~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~ 429 (729)
....+++++||+|||||||.||||+++|++++ +........++++++|++++.++++|++++ +.++++|+.|++++++
T Consensus 227 ~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~ 306 (628)
T TIGR02316 227 EWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLY 306 (628)
T ss_pred eecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEe
Confidence 33568999999999999999999999999975 444555667899999999999999999986 6789999999999999
Q ss_pred CCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeec
Q 004815 430 NGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEY 504 (729)
Q Consensus 430 ~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~ 504 (729)
++. +++..++++|+++++|+++++|++++.|.+... ....++++||.+++|||++++++.++++..++ .++++.
T Consensus 307 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~-~~~~~~ 385 (628)
T TIGR02316 307 EGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLG-KPVIDN 385 (628)
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHhC-CCEEec
Confidence 863 367789999999999999999999999987642 23556899999999999999999998887664 789999
Q ss_pred ccccccccccccCCcc---cccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeecccc-CC-Cccccccccccc
Q 004815 505 CGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIF-GA-SSTLLNANHYDV 578 (729)
Q Consensus 505 YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~-~~-~~~~~~~~~~~~ 578 (729)
||+||++..++..... .....+++|+|++|++++|+|+ +|+++|.|+. |||++.++.. +. ..++++++.+..
T Consensus 386 yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~--Gel~v~gp~~~g~~~~~~~~~~~~~~ 463 (628)
T TIGR02316 386 YWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEK--GVLTVVPPLPPGCLSTVWGDDARFLK 463 (628)
T ss_pred ccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCc--EEEEEecCCCccccccccCChHHHHH
Confidence 9999998543332221 1234578899999999999998 7999999987 9999955421 11 113445544332
Q ss_pred -ccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeE
Q 004815 579 -YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 657 (729)
Q Consensus 579 -~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l 657 (729)
+|... +++||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.+
T Consensus 464 ~~~~~~----~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~-~~p~V~ea~Vvg~~d~~~g-~~~ 537 (628)
T TIGR02316 464 TYWSHF----KRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVS-SHPSVAEVAVVGVHDELKG-QVA 537 (628)
T ss_pred hhhhcC----CCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeeecCCCC-eEE
Confidence 33222 2459999999999999999999999999999999999999999995 9999999999999998887 899
Q ss_pred EEEEEecCCCCCC---CChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 658 TIVVVFKDSNYTP---PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 658 ~a~vv~~~~~~~~---~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++||++++ +... .+...+.+.|+++++++|++|++|+.|+++++||+|+|||++|++|++++..
T Consensus 538 ~~~vv~~~-~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~ 604 (628)
T TIGR02316 538 VVFAILKE-SDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEG 604 (628)
T ss_pred EEEEEEcC-CcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence 99999886 4310 1234677788889999999999999999999999999999999999998765
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-81 Score=729.35 Aligned_cols=607 Identities=27% Similarity=0.417 Sum_probs=489.0
Q ss_pred CCCccCChhhhhhCcHHHHHHHhccccccCCCCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCC
Q 004815 81 PPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGE 160 (729)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (729)
.++|.|+++....++|+.|.+..+.. |+..+.+|+.++++++++++.||..+++...+.|.++++.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~--- 74 (655)
T PRK03584 3 DPLWTPSAERIAASRMTAFIRWLAAR-----RGLSFDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTVVLAGRR--- 74 (655)
T ss_pred CCCCCCChhhcccchHHHHHHHHHHH-----hCCChHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCCcEeecCCC---
Confidence 45888888777888988886665432 3334467899999999999999999999877889998888865422
Q ss_pred CCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 004815 161 NHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAI 240 (729)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai 240 (729)
....+||.++..|++++++++ .+|+++|+++.++ .+..+++||+||.++++++|+.|+++|+++||+|+|
T Consensus 75 ----~~~~~wf~~~~~n~~~~~~~~---~~~~~~Al~~~~~---~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 144 (655)
T PRK03584 75 ----MPGARWFPGARLNYAENLLRH---RRDDRPAIIFRGE---DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAA 144 (655)
T ss_pred ----CCCCeeCCCCEeeHHHHhhcc---CCCCCeEEEEECC---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 235789999999999999974 5799999999764 234568999999999999999999999999999999
Q ss_pred ECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHh---hcCC--cEEE
Q 004815 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVID---AQAP--LAIV 315 (729)
Q Consensus 241 ~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~ 315 (729)
+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...++++.++....+.+ .++. .+++
T Consensus 145 ~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (655)
T PRK03584 145 YLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVV 224 (655)
T ss_pred EcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEE
Confidence 9999999999999999999999999999999999999999999999999877666655554444332 2222 3444
Q ss_pred EcCCCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHH-HHHHHHHhhCC
Q 004815 316 IPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPF-KAAADAWCHMD 394 (729)
Q Consensus 316 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~ 394 (729)
+.................|++++.... ..........+++++||+|||||||.||||+++|++++ +.+......++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~ 301 (655)
T PRK03584 225 VPYLGPAAAAAALPGALLWEDFLAPAE---AAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCD 301 (655)
T ss_pred EecCCCcccccccCCcccHHHHhhccc---cCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcC
Confidence 432221111111223456777665211 11222345577999999999999999999999999875 45666667789
Q ss_pred CCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCC
Q 004815 395 IRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGY 469 (729)
Q Consensus 395 ~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~ 469 (729)
+.++|+++++++++|+++.+ ++++|+.|++++++++. .++..++++|+++++|++.++|++++.+.+... ....
T Consensus 302 ~~~~d~~~~~~~~~~~~~~~-~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~ 380 (655)
T PRK03584 302 LGPGDRFFWYTTCGWMMWNW-LVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETH 380 (655)
T ss_pred CCCCCEEEEcCCchHHhHHH-HHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccC
Confidence 99999999999999986643 56899999999998754 367889999999999999999999999876532 2345
Q ss_pred CCCCccEEEeecCCCCHhHHHHHHhccC-CCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccC
Q 004815 470 DWSSIRCFGSTGEASNVDEYLWLMGRAL-YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIP 548 (729)
Q Consensus 470 ~l~sLr~v~~gGe~l~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p 548 (729)
++++||.+++|||++++++++++.+.++ +.++.+.||+||++..+.......+...+++|.|++|++++|+|++|+++
T Consensus 381 ~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~- 459 (655)
T PRK03584 381 DLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV- 459 (655)
T ss_pred ChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC-
Confidence 6899999999999999999999988774 57899999999987554433333344567899999999999999999999
Q ss_pred CCCCceeEEEeeccccCCC-ccccccccc---ccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeec
Q 004815 549 QNVPGMGELALSPLIFGAS-STLLNANHY---DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVS 624 (729)
Q Consensus 549 ~g~~giGel~v~~~~~~~~-~~~~~~~~~---~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~ 624 (729)
.|+. |||+|.+...+.. .|+++++.+ ..+|...+ | ||+|||+|++|+||+++|+||+||+||++|+||+
T Consensus 460 ~g~~--GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~---g--~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~ 532 (655)
T PRK03584 460 VGEV--GELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFP---G--VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIG 532 (655)
T ss_pred CCCc--eEEEEccCCCCCcceeeCCCccchHHHhhhccCC---C--EeecCCeEEECCCCeEEEEeeccCeeecCcEEEC
Confidence 6776 9999966432222 234455432 23343322 3 8999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCC
Q 004815 625 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLP 704 (729)
Q Consensus 625 ~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP 704 (729)
|.|||++|. .||+|.+|+|++++++..+ +.+++||++++ +. . ..+++++.|+++++++|++|++|..|+++++||
T Consensus 533 p~EIE~~l~-~~p~V~ea~vvg~~~~~~g-~~~~a~vv~~~-~~-~-~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP 607 (655)
T PRK03584 533 TAEIYRQVE-ALPEVLDSLVIGQEWPDGD-VRMPLFVVLAE-GV-T-LDDALRARIRTTIRTNLSPRHVPDKIIAVPDIP 607 (655)
T ss_pred HHHHHHHHH-hCCCcceEEEEeeEcCCCC-EEEEEEEEECC-CC-C-CcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCC
Confidence 999999995 9999999999999998777 89999999987 54 2 235677788889999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHh
Q 004815 705 RTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 705 ~t~~GKidR~~L~~~~~~ 722 (729)
+|+||||+|++|++++..
T Consensus 608 ~t~sGKi~r~~lr~~~~~ 625 (655)
T PRK03584 608 RTLSGKKVELPVKKLLHG 625 (655)
T ss_pred CCCCccchHHHHHHHHcC
Confidence 999999999999998865
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-81 Score=727.43 Aligned_cols=584 Identities=24% Similarity=0.368 Sum_probs=469.2
Q ss_pred CCHHHHHHHHhhChHHHHHHHHhhcccceecCCc--eeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccC-CCCCC
Q 004815 117 SSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQ--CILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSK-RSLDD 193 (729)
Q Consensus 117 ~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~pd~ 193 (729)
.+|+.++++++++++.||.++++.+ .|.++++ ++++..... .......+||.++..|.++++|+++++ .+|++
T Consensus 30 ~~y~~~~~~s~~~~~~fw~~~~~~~--~~~~~~~~~~v~~~~~~~--~~~~~~~~wf~g~~~N~~~~~l~~~~~~~~~~~ 105 (666)
T PLN02654 30 QQYMEMYKRSVDDPAGFWSDIASQF--YWKQKWEGDEVCSENLDV--RKGPISIEWFKGGKTNICYNCLDRNVEAGNGDK 105 (666)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhC--CeecCCCcceEeccCCCc--ccCCccccccCCCEeeHHHHHHHHhhccCCCCC
Confidence 4689999999999999999999985 5777763 565321100 001235789999999999999999885 48999
Q ss_pred eEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHH
Q 004815 194 IVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLE 273 (729)
Q Consensus 194 ~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~ 273 (729)
+|+++.+. ..+..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.++
T Consensus 106 ~Al~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~ 183 (666)
T PLN02654 106 IAIYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAES 183 (666)
T ss_pred EEEEEEcC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHH
Confidence 99998543 1223458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC---------cEEEEcCCCC--Cccccc-CCCCcCHHHHHHHh
Q 004815 274 ISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP---------LAIVIPAKGS--SFSMKL-RDGDISWLDFLERV 341 (729)
Q Consensus 274 l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~--~~~~~~-~~~~~~~~~~~~~~ 341 (729)
+.+++++++++++|+++...+.++.+.....+.+.+.. .++....... ...... ......|+++....
T Consensus 184 l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (666)
T PLN02654 184 LAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNY 263 (666)
T ss_pred HHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcC
Confidence 99999999999999999877776665544433322211 1111111000 000000 01233466554321
Q ss_pred hccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHH-HHHHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHH
Q 004815 342 RKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK-AAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYAS 419 (729)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~ 419 (729)
+...+.....++|++||+|||||||+||||+++|++++. ........++++++|++++.++++|.++. +.++++
T Consensus 264 ----~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 339 (666)
T PLN02654 264 ----PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGP 339 (666)
T ss_pred ----CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHH
Confidence 112223346789999999999999999999999999764 44455567899999999999999999987 568899
Q ss_pred hhcCceEEEeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 420 LLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 420 L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
|+.|++++++++. +++..++++|++++||++.++|++++.|++... ....++++||.++++||+++++.++++.+
T Consensus 340 L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~ 419 (666)
T PLN02654 340 MLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFN 419 (666)
T ss_pred HHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHH
Confidence 9999999999864 367889999999999999999999999988653 23457899999999999999999999988
Q ss_pred ccCC--CCeeecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCC-ccc
Q 004815 495 RALY--KPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGAS-STL 570 (729)
Q Consensus 495 ~~~~--~~l~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~-~~~ 570 (729)
.++. +++.+.||+||+++..+...+. .+...+++|+|++|++++|+|++|++++.|+. |||+|.+++.+.. .|+
T Consensus 420 ~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~--Gel~v~~~~p~~~~gy~ 497 (666)
T PLN02654 420 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECS--GYLCVKKSWPGAFRTLY 497 (666)
T ss_pred HhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCc--eEEEEcCCCchhhhhhc
Confidence 8763 6899999999998755443332 23456789999999999999999999998875 9999965322222 235
Q ss_pred cccccccccc-ccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecC
Q 004815 571 LNANHYDVYF-SGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 649 (729)
Q Consensus 571 ~~~~~~~~~f-~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~ 649 (729)
++++.+...| ... +| ||+|||+|++|+||+++++||+||+||++|+||+|.|||++|. .||+|.+|+|+++++
T Consensus 498 ~~~~~~~~~~~~~~---~g--~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~-~~p~V~eaaVvg~~d 571 (666)
T PLN02654 498 GDHERYETTYFKPF---AG--YYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALV-SHPQCAEAAVVGIEH 571 (666)
T ss_pred CChHHHHHhhhhcC---CC--EEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEeeEc
Confidence 5666654433 322 24 9999999999999999999999999999999999999999996 999999999999999
Q ss_pred CCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 650 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 650 ~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+..| +.++|||++++ +. .. .+++++.|+++++++|++|++|+.|+++++||+|+||||+|++|++.+.+
T Consensus 572 ~~~g-e~~~a~Vvl~~-~~-~~-~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 572 EVKG-QGIYAFVTLVE-GV-PY-SEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 640 (666)
T ss_pred CCCC-eEEEEEEEECC-CC-CC-CHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcC
Confidence 8887 89999999988 54 22 35788889999999999999999999999999999999999999999865
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-81 Score=722.31 Aligned_cols=606 Identities=25% Similarity=0.396 Sum_probs=485.4
Q ss_pred CCCccCChhhhhhCcHHHHHHHhccccccCCCCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCC
Q 004815 81 PPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGE 160 (729)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (729)
.++|.|+.+....++|..+.+..+.. |+..+.+|+.++++++++++.||..+++...+.|.+++.++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~--- 75 (652)
T TIGR01217 4 QPLWQPDAQRIAQARMTRFQAWAGEH-----HGAAEGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCARVVDDRT--- 75 (652)
T ss_pred CCCCCCChhhcccchHHHHHHHHHHh-----hCCChhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCceeeeCCC---
Confidence 35888888777788888886665432 3445567899999999999999999999988899999999986422
Q ss_pred CCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 004815 161 NHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAI 240 (729)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai 240 (729)
....+||.++..|.++++++. .++++|+++.++ .+..+++||+||.++++++|+.|+++|+++||+|+|
T Consensus 76 ----~~~~~wf~~~~~n~~~~~~~~----~~~~~a~~~~~~---~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i 144 (652)
T TIGR01217 76 ----MPGAQWFPGARLNYAENLLRA----AGTEPALLYVDE---THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSG 144 (652)
T ss_pred ----CCCCEECCCCeeeHHHHHhcc----CCCCeEEEEECC---CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 234789999999999999973 468999999765 234568999999999999999999999999999999
Q ss_pred ECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhh---cC--CcEEE
Q 004815 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA---QA--PLAIV 315 (729)
Q Consensus 241 ~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~ 315 (729)
+++|++++++++|||+++|++++|++|.++.+++.+++++++|+++|+++...++++..+....+.+. ++ ..+++
T Consensus 145 ~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~ 224 (652)
T TIGR01217 145 YLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVH 224 (652)
T ss_pred EcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999877777766655544432 22 22344
Q ss_pred EcCCCCCc-ccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHH-HHHHHHHhhC
Q 004815 316 IPAKGSSF-SMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPF-KAAADAWCHM 393 (729)
Q Consensus 316 i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~-~~~~~~~~~~ 393 (729)
+...+... ......+...|+++...... .........++++++|+|||||||.||||+++|++++ +........+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~ 301 (652)
T TIGR01217 225 IPYLGPRETEAPKIDGALDLEDFTAAAQA---AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC 301 (652)
T ss_pred EeCCCCcccccccccCcccHHHHHhcccC---CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc
Confidence 43222110 00001234567776543211 1112234567999999999999999999999999864 4555556678
Q ss_pred CCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCC---ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCC
Q 004815 394 DIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDG 468 (729)
Q Consensus 394 ~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~---~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~ 468 (729)
+++++|+++++++++|+++.+ ++.+|+.|++++++++.+ ++..++++|+++++|++..+|++++.+.+... ...
T Consensus 302 ~~~~~d~~~~~~~~~~~~~~~-~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~ 380 (652)
T TIGR01217 302 DLGPGDRLFYYTTTGWMMWNW-LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPART 380 (652)
T ss_pred CCCCCcEEEEeCCcchhhhHH-HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCcccc
Confidence 999999999999999987544 458999999999997543 67789999999999999999998888765421 234
Q ss_pred CCCCCccEEEeecCCCCHhHHHHHHhccC-CCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCcc
Q 004815 469 YDWSSIRCFGSTGEASNVDEYLWLMGRAL-YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPI 547 (729)
Q Consensus 469 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~ 547 (729)
.++++||.+++|||+++++.++++.+.++ +..+.+.||+||++.++.......+...+++|.|.+|++++|+|++|+++
T Consensus 381 ~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~ 460 (652)
T TIGR01217 381 HDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPV 460 (652)
T ss_pred CChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCC
Confidence 67899999999999999999999887664 35678999999976444333333344557899999999999999999998
Q ss_pred CCCCCceeEEEeeccccCCC-cccccccccc---cccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceee
Q 004815 548 PQNVPGMGELALSPLIFGAS-STLLNANHYD---VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (729)
Q Consensus 548 p~g~~giGel~v~~~~~~~~-~~~~~~~~~~---~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri 623 (729)
+ |+. |||++.+...+.. .|+++++.++ .+|...+ | ||+|||+|++|+||+++|+||+||+||++|+||
T Consensus 461 ~-g~~--GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~---g--~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri 532 (652)
T TIGR01217 461 T-GEV--GELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYP---G--VWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRM 532 (652)
T ss_pred C-CCc--cEEEEecCCCccccceeCCCccchhHHhhhcCCC---C--EEEcCCcEEECCCCcEEEEecccCeEecCCEEc
Confidence 4 776 9999965432222 2345555432 3443322 3 899999999999999999999999999999999
Q ss_pred chHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCC
Q 004815 624 SSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSL 703 (729)
Q Consensus 624 ~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~l 703 (729)
+|.|||++|. +||+|.+|+|++++++..| +.++|||++++ +. .. .+++.+.|+++++++|++|++|+.|+++++|
T Consensus 533 ~p~EIE~~l~-~~p~V~eaavvg~~~~~~g-e~~~afVv~~~-~~-~~-~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~l 607 (652)
T TIGR01217 533 GSAEIYNAVE-RLDEVRESLCIGQEQPDGG-YRVVLFVHLAP-GA-TL-DDALLDRIKRTIRAGLSPRHVPDEIIEVPGI 607 (652)
T ss_pred CHHHHHHHHH-hCCCcceEEEEeeecCCCC-EEEEEEEEECC-CC-CC-CHHHHHHHHHHHHhhCCCCcCCCEEEECCCC
Confidence 9999999995 9999999999999998887 89999999987 54 22 3567778888999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHh
Q 004815 704 PRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 704 P~t~~GKidR~~L~~~~~~ 722 (729)
|+|+||||+|+.|++.++.
T Consensus 608 P~T~sGKi~r~~Lr~~~~~ 626 (652)
T TIGR01217 608 PHTLTGKRVEVAVKRVLQG 626 (652)
T ss_pred CCCCCccChHHHHHHHHcC
Confidence 9999999999999998754
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-84 Score=866.59 Aligned_cols=646 Identities=15% Similarity=0.129 Sum_probs=523.3
Q ss_pred HHcCCChHH---HHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCCCCchhheeeeeecCCCCCC-----CCCccCC
Q 004815 18 EALGIPSKL---AEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD-----PPAWIPD 87 (729)
Q Consensus 18 ~~~~~~~~~---~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~-----~~~~~~~ 87 (729)
+++++.... ..++.++|+++++..++ +||++||+++.+..+.+++.++|+.||+.+|...... ..+....
T Consensus 3553 lp~Rv~~~~~~~~~t~~~~L~~v~~~~~~~~~~q~~~l~~i~~~~~~~~~~~LF~t~~v~~n~~~~~~~~~~~~~~~~~~ 3632 (4334)
T PRK05691 3553 IALRVQLPAAGQRCSVRQWLQGLLDSNMELREYEYLPLVAIQECSELPKGQPLFDSLFVFENAPVEVSVLDRAQSLNASS 3632 (4334)
T ss_pred cceEEeeCCccCCCcHHHHHHHHHHHHHHHhhccCCCHHHHHHHhcCCCCCCCccEEEEeecCCcchhhhcccccccccc
Confidence 455666544 36999999999999888 9999999999999988888999999999988753110 0111111
Q ss_pred --hhhhhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCC-
Q 004815 88 --PEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHL- 163 (729)
Q Consensus 88 --~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 163 (729)
.....+|+|++.+.. ++.+...+ |++ ++|++.+++++.++|.++|+++. +.+...+....+..+++
T Consensus 3633 ~~~~~~~~~~l~~~~~~-~~~l~~~l~y~~-----~~~~~~~~~~l~~~f~~~L~~l~----~~~~~~~~~~~~~~~~~~ 3702 (4334)
T PRK05691 3633 DSGRTHTNFPLTAVCYP-GDDLGLHLSYDQ-----RYFDAPTVERLLGEFKRLLLALV----QGFHGDLSELPLLGEQER 3702 (4334)
T ss_pred cccccccCCCeEEEEec-CCceEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHH----hCcCCChhhcCCCCHHHH
Confidence 123356777765433 34566677 887 99999999999999999999973 34444455544433332
Q ss_pred CCCCCCcCCCCcc----hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004815 164 SNPGGQWLPGAFV----NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIA 239 (729)
Q Consensus 164 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Va 239 (729)
...+..|+..... ..++++|.++++++||++|+++.+. ++||+||+++++++|+.|+++|+++|++|+
T Consensus 3703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~ 3774 (4334)
T PRK05691 3703 DFLLDGCNRSERDYPLEQSYVRLFEAQVAAHPQRIAASCLDQ--------QWSYAELNRAANRLGHALRAAGVGVDQPVA 3774 (4334)
T ss_pred HHHHHhhCCccCCCccccCHHHHHHHHHHhCCCceEEEcCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 2344556654332 2456788889999999999999888 999999999999999999999999999999
Q ss_pred EECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC---CcEEEE
Q 004815 240 IDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA---PLAIVI 316 (729)
Q Consensus 240 i~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i 316 (729)
|++++|+++++++|||+|+|++||||||.+|.+|+.+++++++++++|+++...... ..+.+.+. ...+++
T Consensus 3775 v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~ 3848 (4334)
T PRK05691 3775 LLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQA------RALLDELGCANRPRLLV 3848 (4334)
T ss_pred EEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchh------hhhhcccccccccceee
Confidence 999999999999999999999999999999999999999999999999988643211 11111111 001111
Q ss_pred cCCCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCC
Q 004815 317 PAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIR 396 (729)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 396 (729)
. ++..... .+...+.....++++|||+|||||||+||||+++|+++++.+.+....++++
T Consensus 3849 ~-----------------~~~~~~~---~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~ 3908 (4334)
T PRK05691 3849 W-----------------EEVQAGE---VASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALS 3908 (4334)
T ss_pred e-----------------ccccccc---ccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCC
Confidence 0 0000000 0111222345789999999999999999999999999999999998999999
Q ss_pred CCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCc
Q 004815 397 KADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 474 (729)
Q Consensus 397 ~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sL 474 (729)
++|+++++++++||.+++++|.+|+.|+++++++.. .++..+++.|++++||++.++|++++.+++.. ...+++|
T Consensus 3909 ~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~l 3985 (4334)
T PRK05691 3909 EADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGL 3985 (4334)
T ss_pred ccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCc
Confidence 999999999999999999999999999999998754 36788999999999999999999999887642 2347899
Q ss_pred cEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcc---cccccccccCCCCCcEEEEEcCCCCccCCCC
Q 004815 475 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQNV 551 (729)
Q Consensus 475 r~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~ 551 (729)
|.+++|||++++++.++|.+..++++++|.||+||+++.++..... ......+||+|++|++++|+|++++++|.|.
T Consensus 3986 r~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~ 4065 (4334)
T PRK05691 3986 RWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGA 4065 (4334)
T ss_pred eEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCCCC
Confidence 9999999999999999998888889999999999999866543322 1223468999999999999999999999999
Q ss_pred CceeEEEeeccccCCCcccccccccccccccccC-CCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHH
Q 004815 552 PGMGELALSPLIFGASSTLLNANHYDVYFSGMPS-RNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIER 630 (729)
Q Consensus 552 ~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~-~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~ 630 (729)
. |||+|++..++.+ |+++++.|+++|+.+|+ .+|.|||||||+|+|++||+|+|+||+|+|||++|+||+++|||+
T Consensus 4066 ~--GEL~i~G~~v~~G-Y~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~ 4142 (4334)
T PRK05691 4066 V--GELCVAGTGVGRG-YVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEA 4142 (4334)
T ss_pred c--eEEEEeccccccc-ccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHH
Confidence 7 9999987777655 47889999999999997 457899999999999999999999999999999999999999999
Q ss_pred HHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCCh
Q 004815 631 ICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNK 710 (729)
Q Consensus 631 ~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GK 710 (729)
+|. ++|+|.+|+|+... ...+ +.++||++... +. ....++.+.++++|+++||+||+|+.|+.+++||+|+|||
T Consensus 4143 ~l~-~~~~v~~a~v~~~~-~~~~-~~l~a~~~~~~-~~--~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GK 4216 (4334)
T PRK05691 4143 RLH-EQAEVREAAVAVQE-GVNG-KHLVGYLVPHQ-TV--LAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGK 4216 (4334)
T ss_pred HHH-hCCCccEEEEEEec-CCCC-cEEEEEEeCCc-cc--ccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCc
Confidence 995 99999998887654 3344 68999999776 32 2344566778889999999999999999999999999999
Q ss_pred hhHHHHHHH
Q 004815 711 VMRRVLRKQ 719 (729)
Q Consensus 711 idR~~L~~~ 719 (729)
|||++|+++
T Consensus 4217 idr~~L~~~ 4225 (4334)
T PRK05691 4217 LDRKALPAL 4225 (4334)
T ss_pred ccHhhcCCC
Confidence 999999875
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-81 Score=722.95 Aligned_cols=582 Identities=27% Similarity=0.423 Sum_probs=474.7
Q ss_pred CCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeE
Q 004815 116 ISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIV 195 (729)
Q Consensus 116 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~A 195 (729)
+.+|+.++++++++++.||..+++. .+.|.+++.++++... ....+||.++.+|+++++|+++++++||++|
T Consensus 4 ~~~y~~~~~~s~~~~~~fw~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~wf~~~~~n~~~~~l~~~~~~~p~~~A 75 (625)
T TIGR02188 4 LEQYKELYEESIEDPDKFWAKLARE-LLDWFKPFTKVLDWSF-------PPFYKWFVGGELNVSYNCVDRHLEARPDKVA 75 (625)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHh-cCceecCCceeecCCC-------CCCCeeCCCCEEEHHHHHHHHhhccCCCCeE
Confidence 3578999999999999999999988 4679999998875432 3457899999999999999999989999999
Q ss_pred EEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHH
Q 004815 196 IRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEIS 275 (729)
Q Consensus 196 l~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~ 275 (729)
+++.++ ..+..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.
T Consensus 76 l~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~ 153 (625)
T TIGR02188 76 IIWEGD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALA 153 (625)
T ss_pred EEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHH
Confidence 998654 123456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEEEecceecCCccccchhhHHhh---cC---CcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCcc
Q 004815 276 ARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA---QA---PLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEF 349 (729)
Q Consensus 276 ~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (729)
+++++++++++|+++...++++.++....+.+. .+ ..++++...+..... .......|++++.... ...
T Consensus 154 ~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~ 228 (625)
T TIGR02188 154 DRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPW-VEGRDVWWHDLMAKAS----AYC 228 (625)
T ss_pred HHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCc-cccccccHHHHHhhcC----CCC
Confidence 999999999999998877766665554443332 22 123333322211110 0112345666654321 122
Q ss_pred ccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHH-HHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEE
Q 004815 350 AAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAA-ADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIA 427 (729)
Q Consensus 350 ~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lv 427 (729)
......+++++||+|||||||+||||+++|++++... ......++++++|++++.++++|..+. +.++++|+.|++++
T Consensus 229 ~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~v 308 (625)
T TIGR02188 229 EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTV 308 (625)
T ss_pred CceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEE
Confidence 3345678999999999999999999999999976543 334456789999999999999999886 67889999999999
Q ss_pred EeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC--CCCCCCCccEEEeecCCCCHhHHHHHHhccC--CCC
Q 004815 428 LYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--YKP 500 (729)
Q Consensus 428 l~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~--~~~ 500 (729)
++++. +++..++++|+++++|++.++|++++.|.+.... ...++++||.+++||+++++++++++.+.++ +++
T Consensus 309 l~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~ 388 (625)
T TIGR02188 309 MFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCP 388 (625)
T ss_pred EECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCc
Confidence 98754 3678899999999999999999999999876432 3456899999999999999999999988775 378
Q ss_pred eeecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccC-CCCCceeEEEeeccccCCC-cccccccccc
Q 004815 501 VIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIP-QNVPGMGELALSPLIFGAS-STLLNANHYD 577 (729)
Q Consensus 501 l~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p-~g~~giGel~v~~~~~~~~-~~~~~~~~~~ 577 (729)
++|.||+||++..++..... .+...+++|+|++|++++|+|++|++++ .|+. |||+|.+.+.+.. .|+++++.+.
T Consensus 389 i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~--GeL~v~~p~p~~~~gy~~~~~~~~ 466 (625)
T TIGR02188 389 IVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEG--GYLVIKQPWPGMLRTIYGDHERFV 466 (625)
T ss_pred eEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCCe--EEEEEccCCCcccccccCChHHHH
Confidence 99999999998765443322 2345678999999999999999999999 8886 9999966432222 2345555444
Q ss_pred cccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeE
Q 004815 578 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 657 (729)
Q Consensus 578 ~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l 657 (729)
..|.. ..+| ||+|||+|++|+||+++++||+||+||++|+||+|.|||++|. .||+|.+|+|++++++..| +.+
T Consensus 467 ~~~~~--~~~g--~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~~~~~g-~~~ 540 (625)
T TIGR02188 467 DTYFS--PFPG--YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALV-SHPAVAEAAVVGIPDDIKG-QAI 540 (625)
T ss_pred HHHhc--cCCC--EEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEE
Confidence 33321 1123 9999999999999999999999999999999999999999995 9999999999999998877 899
Q ss_pred EEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 658 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 658 ~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
+|||++++ +. ....++.+.|+++++++|++|++|+.|+++++||+|+|||++|+.|++++...
T Consensus 541 ~a~vv~~~-~~--~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 541 YAFVTLKD-GY--EPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred EEEEEeCC-CC--CCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 99999987 54 22345677788899999999999999999999999999999999999997653
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-83 Score=805.11 Aligned_cols=671 Identities=15% Similarity=0.113 Sum_probs=510.4
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCCCCchhheeeeeecCCCCCCCCCccCChhhhhh
Q 004815 16 DIEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPDPPAWIPDPEAAKV 93 (729)
Q Consensus 16 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 93 (729)
...++++...+..+|.++|++++++.++ +||++||++|++.+++.|+.+.+|.+| +.++...+... ........+
T Consensus 80 ~~lplr~~~~~~~t~~~~l~~~~~~~~~~~~h~~~p~~~i~~~l~~~~~~~~~p~lf-~~~~~~~~~~~--~~~~~~~~~ 156 (1389)
T TIGR03443 80 RPFVLRLNITPELSFLQLYAKVSEEEKEGASDIGVPFDELSEHIQAAKKLERTPPLF-RLAFQDAPDNQ--QTTYSTGST 156 (1389)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHhccccCCCCCCccE-EEEeecCCccc--ccccccCCc
Confidence 3468889999999999999999999988 999999999999999988654444322 22222111100 011134468
Q ss_pred CcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCC-----
Q 004815 94 TNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPG----- 167 (729)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (729)
+||.+.+.+.++++...+ |+. ++|++.+++++.++|..+|+++. +.|+..+....+..+.+....
T Consensus 157 ~dl~~~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~f~~lL~~~~----~~p~~~l~~l~~~~~~~~~~~~~~~~ 227 (1389)
T TIGR03443 157 TDLTVFLTPSSPELELSIYYNS-----LLFSSDRITIVADQLAQLLSAAS----SNPDEPIGKVSLITPSQKSLLPDPTK 227 (1389)
T ss_pred cceEEEEEecCCcEEEEEEEch-----hcCCHHHHHHHHHHHHHHHHHHH----hCcCCceecccCCCHHHHhhhhcccc
Confidence 899988888788888888 988 99999999999999999999873 444444444333222211111
Q ss_pred -CCcCCCCcchHHhhhhccccCCCCCCeEEEEeecCC-CCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Q 004815 168 -GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGD-GGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245 (729)
Q Consensus 168 -~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s 245 (729)
..|.. ......++|+++++++||++|+++..... .....+++||+||+++++++|++|++.|+++|++|+|+++|+
T Consensus 228 ~~~~~~--~~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~ 305 (1389)
T TIGR03443 228 DLDWSG--FRGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRG 305 (1389)
T ss_pred ccCcCc--ccCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCC
Confidence 23432 12345678899999999999998742210 011234899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhh-c----CCcEEEEcCCC
Q 004815 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA-Q----APLAIVIPAKG 320 (729)
Q Consensus 246 ~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~i~~~~ 320 (729)
+++++++|||+++|++|+|+||.+|.+++.++++++++++++++..... ........... . ....+.+....
T Consensus 306 ~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1389)
T TIGR03443 306 VDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGT---LDQLVRDYIDKELELRTEIPALALQDDG 382 (1389)
T ss_pred HHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccc---cchhhhhhhhcccccccccceEEecccc
Confidence 9999999999999999999999999999999999999999998764210 00111111000 0 00011111100
Q ss_pred CCcccccCCCCcC--HHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCC
Q 004815 321 SSFSMKLRDGDIS--WLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKA 398 (729)
Q Consensus 321 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 398 (729)
.. ..+... ..+....... ...........++++|||+|||||||.||||+++|+++++.+.+....+++.++
T Consensus 383 ~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 456 (1389)
T TIGR03443 383 SL-----VGGSLEGGETDVLAPYQA-LKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSEN 456 (1389)
T ss_pred cc-----cccccccccccccccccc-cccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCC
Confidence 00 000000 0011000000 000111223467899999999999999999999999999999998889999999
Q ss_pred CEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCC--ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccE
Q 004815 399 DIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSP--LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRC 476 (729)
Q Consensus 399 d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~--~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~ 476 (729)
|++++.++++|+.+++++|.+|+.|+++++.+... ++..+++.|++++||++.++|++++.|.... ...+++||.
T Consensus 457 d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~ 533 (1389)
T TIGR03443 457 DKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHH 533 (1389)
T ss_pred CEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccE
Confidence 99999999999999999999999999999986432 5678999999999999999999999987542 234789999
Q ss_pred EEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCccc----------ccccccccCCCCCcEEEEEcCC--C
Q 004815 477 FGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ----------AQSLAAFSTPAMGCKLFILGND--G 544 (729)
Q Consensus 477 v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~v~d~~--g 544 (729)
+++|||++++...+++....++++++|.||+||+++.++...... .....++|+|++|++++|+|++ +
T Consensus 534 ~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~ 613 (1389)
T TIGR03443 534 AFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRT 613 (1389)
T ss_pred EEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCC
Confidence 999999999999988877777789999999999987554322110 1124689999999999999965 5
Q ss_pred CccCCCCCceeEEEeeccccCCCcccccccccccccccccCC----------------------CCceeEEeCceEEEec
Q 004815 545 CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSR----------------------NGQILRRHGDVFERTS 602 (729)
Q Consensus 545 ~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~----------------------~g~~~y~TGDl~~~~~ 602 (729)
+++|.|++ |||+|++..+..+ |+++++.|+++|..+|+. ++.+||+|||+|++++
T Consensus 614 ~~~~~G~~--GEL~i~G~~v~~G-Y~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~ 690 (1389)
T TIGR03443 614 QTCGVGEV--GEIYVRAGGLAEG-YLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLP 690 (1389)
T ss_pred CcCCCCCc--eEEEecccccchh-cCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcC
Confidence 78999997 9999976665543 467899999999876531 2467999999999999
Q ss_pred CceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCC----------
Q 004815 603 GGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPD---------- 672 (729)
Q Consensus 603 dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~---------- 672 (729)
||+|+|+||.|||||++|+||+|.|||++|. +||.|.+|+|++.++...+ +.++||+++.. +.....
T Consensus 691 dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~-~~p~V~~a~v~~~~~~~~~-~~lva~vv~~~-~~~~~~~~~~~~~~~~ 767 (1389)
T TIGR03443 691 DGNVECCGRADDQVKIRGFRIELGEIDTHLS-QHPLVRENVTLVRRDKDEE-PTLVSYIVPQD-KSDELEEFKSEVDDEE 767 (1389)
T ss_pred CCCEEEecccCCEEEeCcEEecHHHHHHHHH-hCcchheeEEEEeeCCCCC-eEEEEEEeccC-cccccccccccccccc
Confidence 9999999999999999999999999999995 9999999999988877665 78999999763 110100
Q ss_pred -----------hHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHH
Q 004815 673 -----------LNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718 (729)
Q Consensus 673 -----------~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~ 718 (729)
..+..+.++++++++||.||+|..|+++++||+|+||||||++|+.
T Consensus 768 ~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~ 824 (1389)
T TIGR03443 768 SSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPF 824 (1389)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCC
Confidence 1123556777899999999999999999999999999999999974
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-83 Score=801.51 Aligned_cols=643 Identities=17% Similarity=0.171 Sum_probs=508.7
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCC-CCchhheeeeeecCCCC---CCCCCccCChhh
Q 004815 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDL-PFSFHQLLYYGCYKDFG---PDPPAWIPDPEA 90 (729)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r-~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~ 90 (729)
..++++......+|.++|+++++...+ +||+|||++++++++..+ .+|+|++||+.+++... ++..........
T Consensus 296 tlplr~~~~~~~tf~~~l~~~~~~~~~~~~h~~~p~~~i~~~l~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1296)
T PRK10252 296 VLPLRVHIAAQETLPELATRLAAQLKKMRRHQRYDAEQIVRDSGRAAGDEPLFGPVLNIKVFDYQLDFPGVQAQTHTLAT 375 (1296)
T ss_pred eEEEEEecCCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCccCCCCceeEEEEeeecccccCcCCccceeeecCC
Confidence 467777777889999999999998887 999999999999998654 57999999998876631 000000000001
Q ss_pred hhhCcHHHHHH-HhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCC
Q 004815 91 AKVTNVGKLLQ-TRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGG 168 (729)
Q Consensus 91 ~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (729)
...+||++.+. ..++++...+ |+. ++|++.+++++.++|..+|+++. ..|...+....+...++...+.
T Consensus 376 ~~~~dl~l~~~~~~~~~l~~~~~y~~-----~~f~~~~i~~l~~~~~~ll~~~~----~~p~~~i~~~~~~~~~~~~~~~ 446 (1296)
T PRK10252 376 GPVNDLELALFPDEHGGLSIEILANP-----QRYDEATLIAHAERLKALIAQFA----ADPALLCGDVDILLPGEYAQLA 446 (1296)
T ss_pred CccCCeEEEEEECCCCcEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHH----hCCCCChhhcCCCCHHHHHHHH
Confidence 12346666554 3345677777 888 99999999999999999999973 3344434333322211111122
Q ss_pred CcCCCCc---chHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Q 004815 169 QWLPGAF---VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245 (729)
Q Consensus 169 ~~~~~~~---~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s 245 (729)
.|+.... .....++|.++++++||++|+++.+. ++||+||+++++++|+.|.+.|+++||+|+|+++|+
T Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~ 518 (1296)
T PRK10252 447 QVNATAVEIPETTLSALVAQQAAKTPDAPALADARY--------QFSYREMREQVVALANLLRERGVKPGDSVAVALPRS 518 (1296)
T ss_pred HhcCCCCCCCcCCHHHHHHHHHHhCCCCeEEEcCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC
Confidence 3332221 12355778888899999999999877 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCccc
Q 004815 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSM 325 (729)
Q Consensus 246 ~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 325 (729)
+++++++|||+++|++|+|+||.+|.+++.+++++++++++++++......... .. ...+.
T Consensus 519 ~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----------~~-~~~~~-------- 579 (1296)
T PRK10252 519 VFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----------PD-LTSLC-------- 579 (1296)
T ss_pred HHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----------CC-ceeee--------
Confidence 999999999999999999999999999999999999999999987532111000 00 00000
Q ss_pred ccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEcc
Q 004815 326 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPT 405 (729)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~ 405 (729)
+..... .....+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+
T Consensus 580 --------~~~~~~-----~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~ 646 (1296)
T PRK10252 580 --------YNAPLA-----PQGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKT 646 (1296)
T ss_pred --------cccccc-----cccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeC
Confidence 000000 0001111223578999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHHHHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCC--CCCCCCccEEEeec
Q 004815 406 NLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID--GYDWSSIRCFGSTG 481 (729)
Q Consensus 406 ~~~~~~~~~~i~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~--~~~l~sLr~v~~gG 481 (729)
|++|+.+++++|.+|++|+++++.+.. .++..++++|++++||++.++|++++.+++..... ...+++||.+++||
T Consensus 647 ~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gG 726 (1296)
T PRK10252 647 PCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSG 726 (1296)
T ss_pred CcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEec
Confidence 999999999999999999999997643 47788999999999999999999999988753222 23468899999999
Q ss_pred CCCCHhHHHHHHhccCCCCeeecccccccccccccCCccc------ccccccccCCCCCcEEEEEcCCCCccCCCCCcee
Q 004815 482 EASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ------AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMG 555 (729)
Q Consensus 482 e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~------~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giG 555 (729)
|++++++.+++.+.+ +++++|.||+||+++.++...... .....++|+|++|++++|+|++++++|.|++ |
T Consensus 727 e~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~--G 803 (1296)
T PRK10252 727 EALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVA--G 803 (1296)
T ss_pred CCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCc--e
Confidence 999999999888665 578999999999987655433221 2235689999999999999999999999997 9
Q ss_pred EEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcC
Q 004815 556 ELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAV 635 (729)
Q Consensus 556 el~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~ 635 (729)
||+|++..+..+ |+++++.|+++|..+|+.+|.+||+|||+|++++||+++|+||.|+|||++|+||+|.|||++|. .
T Consensus 804 el~i~g~~~~~G-Y~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~-~ 881 (1296)
T PRK10252 804 DLYLTGIQLAQG-YLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQ-A 881 (1296)
T ss_pred EEEecccccchh-hCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHH-h
Confidence 999976655443 46788999999999998888999999999999999999999999999999999999999999995 9
Q ss_pred CCCeeeeEEEeec----CCCCC-ceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCCh
Q 004815 636 DSNVLETAAIGVP----PPDGG-PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNK 710 (729)
Q Consensus 636 ~p~V~~a~Vv~~~----~~~~g-~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GK 710 (729)
||+|.+|+|++.. +...| ...+++|++... +. ..+.+++++ +++++||+||+|..++.+++||+|+|||
T Consensus 882 ~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~-~~-~~~~~~l~~----~l~~~Lp~~~~P~~~~~~~~lP~t~~GK 955 (1296)
T PRK10252 882 LPDVEQAVTHACVINQAAATGGDARQLVGYLVSQS-GL-PLDTSALQA----QLRERLPPHMVPVVLLQLDQLPLSANGK 955 (1296)
T ss_pred CccccceEEEEEeccccccCCCCccEEEEEEEcCC-CC-CCCHHHHHH----HHHhhCchhcCCcEEEEecCCCCCCCcC
Confidence 9999999877652 11122 247999999876 43 345555555 5778999999999999999999999999
Q ss_pred hhHHHHHHH
Q 004815 711 VMRRVLRKQ 719 (729)
Q Consensus 711 idR~~L~~~ 719 (729)
|||++|++.
T Consensus 956 idr~~L~~~ 964 (1296)
T PRK10252 956 LDRKALPLP 964 (1296)
T ss_pred hhHHhcCCC
Confidence 999999764
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-83 Score=867.81 Aligned_cols=643 Identities=19% Similarity=0.192 Sum_probs=526.6
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCCC---CchhheeeeeecCCCCC-------C-CCC
Q 004815 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLP---FSFHQLLYYGCYKDFGP-------D-PPA 83 (729)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r~---~~~~~~~f~~~~~~~~~-------~-~~~ 83 (729)
..++++...++.+|.++|++++++.++ +||++||+++|++|++.|. +|+|++||+++++.... + ...
T Consensus 341 ~lplr~~~~~~~tf~~~l~~v~~~~~~a~~hq~~p~~~iv~~l~~~r~~~~~plf~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (5163)
T PRK12316 341 TQVLRSVFDGRTRVATLLAGVKDTVLGAQAHQDLPFERLVEALKVERSLSHSPLFQVMYNHQPLVADIEALDTVAGLEFG 420 (5163)
T ss_pred eEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhCCCCCCCCCCcEEEEEEeecccccccccccCCCceEE
Confidence 356778888889999999999999887 9999999999999999874 68999999988743200 0 001
Q ss_pred ccCChhhhhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCC
Q 004815 84 WIPDPEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENH 162 (729)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (729)
..+......+|||.+.+.+.++++.+.+ |+. ++|++++++++.++|.++|+.+. +.|+..+...++..++
T Consensus 421 ~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~i~----~~p~~~i~~l~~~~~~ 491 (5163)
T PRK12316 421 QLEWKSRTTQFDLTLDTYEKGGRLHAALTYAT-----DLFEARTVERMARHWQNLLRGMV----ENPQARVDELPMLDAE 491 (5163)
T ss_pred eeccCCCccceeEEEEEEEcCCcEEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHH----hccccccccCCCCCHH
Confidence 1111224468899998888888888888 988 99999999999999999999973 4455555554433322
Q ss_pred CC-CCCCCcCCCCc----chHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCE
Q 004815 163 LS-NPGGQWLPGAF----VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSA 237 (729)
Q Consensus 163 ~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 237 (729)
+. .....|+.... .....++|+++++++||++|+++.++ ++||+||+++++++|+.|+++|+++|++
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~--------~~TY~eL~~~~~~lA~~L~~~gv~~g~~ 563 (5163)
T PRK12316 492 ERGQLVEGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEE--------TLDYAELNRRANRLAHALIERGVGPDVL 563 (5163)
T ss_pred HHHHHHHHhcCccccCCCCCCHHHHHHHHHHHCCCCeEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 22 22234543221 23467889999999999999999877 9999999999999999999999999999
Q ss_pred EEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEc
Q 004815 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIP 317 (729)
Q Consensus 238 Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 317 (729)
|+|+++|++++++++|||+|+|++|||+||.+|.+++.+++++++++++|++....... . ......++.+.
T Consensus 564 V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~---~------~~~~~~~~~~~ 634 (5163)
T PRK12316 564 VGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKL---P------LAAGVQVLDLD 634 (5163)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhC---C------cccCceEEEec
Confidence 99999999999999999999999999999999999999999999999999987532110 0 00001111111
Q ss_pred CCCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCC
Q 004815 318 AKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRK 397 (729)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 397 (729)
... .+ ... .....+.....++++|||+|||||||+||||+++|+++++.+.+....+++++
T Consensus 635 ~~~------------~~---~~~----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~ 695 (5163)
T PRK12316 635 RPA------------AW---LEG----YSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGV 695 (5163)
T ss_pred Ccc------------hh---hcc----CCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCC
Confidence 100 00 000 01112223456899999999999999999999999999999999999999999
Q ss_pred CCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC--CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCcc
Q 004815 398 ADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG--SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 475 (729)
Q Consensus 398 ~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~--~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr 475 (729)
+|++++.+|++|++++++++.+|++|+++++.+. ..++..+++.|++++||++.++|++++.|++... ..++++||
T Consensus 696 ~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~ 773 (5163)
T PRK12316 696 GDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSLR 773 (5163)
T ss_pred CCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCcc
Confidence 9999999999999999999999999999999864 3478899999999999999999999999986532 33578999
Q ss_pred EEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCc-ccccccccccCCCCCcEEEEEcCCCCccCCCCCce
Q 004815 476 CFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGM 554 (729)
Q Consensus 476 ~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~gi 554 (729)
.+++|||++++++.+++.+.+++++++|.||+||+++.++.... .......++|+|++|++++|+|++++++|.|++
T Consensus 774 ~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~-- 851 (5163)
T PRK12316 774 RIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVL-- 851 (5163)
T ss_pred EEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCc--
Confidence 99999999999999999888888899999999999865443322 222345689999999999999999999999997
Q ss_pred eEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhc
Q 004815 555 GELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 634 (729)
Q Consensus 555 Gel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~ 634 (729)
|||+|++..+..+ |+++++.|+++|..+|+.+|.+||+|||+|++++||+|+|+||+|+|||++|+||+|+|||++|.
T Consensus 852 GEl~i~G~~v~~G-Yl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~- 929 (5163)
T PRK12316 852 GELYLAGRGLARG-YHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLL- 929 (5163)
T ss_pred eEEEecccccChh-hCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHH-
Confidence 9999976655543 46789999999999998788899999999999999999999999999999999999999999995
Q ss_pred CCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHH
Q 004815 635 VDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714 (729)
Q Consensus 635 ~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~ 714 (729)
+||+|.+|+|++.+ + +.++|||++.+ +. ....+++++ +++++||+||+|+.|+++++||+|+||||||+
T Consensus 930 ~~p~V~~a~V~~~~----~-~~lva~vv~~~-~~-~~~~~~l~~----~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~ 998 (5163)
T PRK12316 930 EHPWVREAAVLAVD----G-KQLVGYVVLES-EG-GDWREALKA----HLAASLPEYMVPAQWLALERLPLTPNGKLDRK 998 (5163)
T ss_pred hCCCcceEEEEEcC----C-CeEEEEEEccC-CC-CCCHHHHHH----HHHhhCCCccCCCeEEEHhhCCCCCCCChhHH
Confidence 99999999999975 4 78999999876 43 344455554 68889999999999999999999999999999
Q ss_pred HHHHHHH
Q 004815 715 VLRKQLA 721 (729)
Q Consensus 715 ~L~~~~~ 721 (729)
+|++...
T Consensus 999 ~L~~~~~ 1005 (5163)
T PRK12316 999 ALPAPEA 1005 (5163)
T ss_pred hhcCccc
Confidence 9987643
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-83 Score=870.52 Aligned_cols=634 Identities=18% Similarity=0.195 Sum_probs=522.5
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCC---CCchhheeeeeecCCCCC----C-CCCccC
Q 004815 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDL---PFSFHQLLYYGCYKDFGP----D-PPAWIP 86 (729)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r---~~~~~~~~f~~~~~~~~~----~-~~~~~~ 86 (729)
.+++++..+.+.+|.++|++++++.++ +||++||++|++.+++.| ++|+|++||++++..... + ......
T Consensus 2890 tlPlrv~l~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~iv~~l~~~r~~~~~plf~~~~~~~~~~~~~~~~~~~~~~~~~ 2969 (5163)
T PRK12316 2890 TQVLRAQVDAQLAFRDLLGQVKEQALGAQAHQDLPFEQLVEALQPERSLSHSPLFQVMYNHQSGERAAAQLPGLHIESFA 2969 (5163)
T ss_pred ceeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhccccccCCCCceeEEEeeeccccccccCCCceeEeee
Confidence 467788888899999999999999888 999999999999999887 468899999888755311 0 000111
Q ss_pred ChhhhhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCC-CC
Q 004815 87 DPEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENH-LS 164 (729)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 164 (729)
......++||.+.+.+.++++...+ |+. ++|++.+++++.++|.++|+++. +.|+..+....+..++ ..
T Consensus 2970 ~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~f~~lL~~l~----~~p~~~i~~l~~~~~~~~~ 3040 (5163)
T PRK12316 2970 WDGAATQFDLALDTWESAEGLGASLTYAT-----DLFDARTVERLARHWQNLLRGMV----ENPQRSVDELAMLDAEERG 3040 (5163)
T ss_pred ccCCccceeeEEEEEecCCcEEEEEEECc-----CCCCHHHHHHHHHHHHHHHHHHH----hCCCCchhhccCCCHHHHH
Confidence 1123478899998887778888888 988 99999999999999999999973 3444444444433222 22
Q ss_pred CCCCCcCCCCcc----hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 004815 165 NPGGQWLPGAFV----NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAI 240 (729)
Q Consensus 165 ~~~~~~~~~~~~----~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai 240 (729)
..+..|+..... ...+++|.++++++|+++|+++.++ ++||+||+++++++|++|++.|+++|++|+|
T Consensus 3041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l 3112 (5163)
T PRK12316 3041 QLLEAWNATAAEYPLERGVHRLFEEQVERTPDAVALAFGEQ--------RLSYAELNRRANRLAHRLIERGVGPDVLVGV 3112 (5163)
T ss_pred HHHHHhCCCCcCCCCcCCHHHHHHHHHHhCCCCeeEeeCCe--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 223456644322 3467889999999999999999887 9999999999999999999999999999999
Q ss_pred ECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCC
Q 004815 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKG 320 (729)
Q Consensus 241 ~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 320 (729)
+++|++++++++|||+|+|++||||||.+|.+|+.+++++++++++++++.. .++. .....++.+....
T Consensus 3113 ~~~~s~~~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~-----~~~~------~~~~~~~~~~~~~ 3181 (5163)
T PRK12316 3113 AVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL-----RLPL------AQGVQVLDLDRGD 3181 (5163)
T ss_pred EccCCHHHHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCccc-----cCCc------cCCccEEEecccc
Confidence 9999999999999999999999999999999999999999999999998642 0000 0011122221100
Q ss_pred CCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCE
Q 004815 321 SSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADI 400 (729)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~ 400 (729)
.. .....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|+
T Consensus 3182 ------------------~~----~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~ 3239 (5163)
T PRK12316 3182 ------------------EN----YAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDR 3239 (5163)
T ss_pred ------------------cc----ccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccE
Confidence 00 01112233457899999999999999999999999999999999999999999999
Q ss_pred EEEccCcchhhhHHHHHHHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEE
Q 004815 401 VAWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 478 (729)
Q Consensus 401 ~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~ 478 (729)
++++++++||.+++++|.+|++|+++++.+.. .++..+.+.++++++|++.++|+++..+.+.. ....+++||.++
T Consensus 3240 ~l~~~~~~fd~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~--~~~~~~~lr~~~ 3317 (5163)
T PRK12316 3240 VLQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEE--DAHRCTSLKRIV 3317 (5163)
T ss_pred EEeecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcc--ccccCCcceEEE
Confidence 99999999999999999999999999997643 36778999999999999999999999987653 233467899999
Q ss_pred eecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEE
Q 004815 479 STGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGEL 557 (729)
Q Consensus 479 ~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel 557 (729)
+|||++++++.++|.. +.+++|.||+||+++.++..... ......+||+|++|++++|+|++++++|.|++ |||
T Consensus 3318 ~gGe~l~~~~~~~~~~---~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GEl 3392 (5163)
T PRK12316 3318 CGGEALPADLQQQVFA---GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPVPVGAL--GEL 3392 (5163)
T ss_pred EccccCCHHHHHHHHh---CCcEeeccCCCccEeeEeEEeccCCCCCCCccceecCCCEEEEECCCCCCCCCCCC--ceE
Confidence 9999999999998872 46899999999999876654432 22345799999999999999999999999997 999
Q ss_pred EeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCC
Q 004815 558 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 637 (729)
Q Consensus 558 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p 637 (729)
+|++..+..+ |+++++.|+++|+.+|+.+|.+||+|||+|+|++||.|+|+||+|+|||++|+||+|+|||++|. +||
T Consensus 3393 ~i~G~~v~~G-Y~~~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~qvKi~G~rIel~eIE~~l~-~~~ 3470 (5163)
T PRK12316 3393 YLGGEGLARG-YHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLL-EHP 3470 (5163)
T ss_pred Eecccccchh-cCCChhhchhhCCCCCCCCCCeeEecCceEEECCCCCEEEecccCCeEeeCcEeeChHHHHHHHH-hCC
Confidence 9977766654 47889999999999999889999999999999999999999999999999999999999999995 999
Q ss_pred CeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 638 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 638 ~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
+|.+|+|++.. + ++++|||++.. +. ... .+.++++|+++||.||+|..|+++++||+|+|||+||++|+
T Consensus 3471 ~V~~a~v~~~~----~-~~l~a~vv~~~-~~-~~~----~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKvdr~~L~ 3539 (5163)
T PRK12316 3471 WVREAVVLAVD----G-RQLVAYVVPED-EA-GDL----REALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKALP 3539 (5163)
T ss_pred CcceEEEEEcc----C-CeEEEEEEcCC-cC-ccc----HHHHHHHHHhhCCcccCcceeeeHhhcCCCCCcchhHHhcC
Confidence 99999998864 3 68999999876 32 222 33455578899999999999999999999999999999998
Q ss_pred HHH
Q 004815 718 KQL 720 (729)
Q Consensus 718 ~~~ 720 (729)
+..
T Consensus 3540 ~~~ 3542 (5163)
T PRK12316 3540 RPD 3542 (5163)
T ss_pred CCc
Confidence 643
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-79 Score=711.19 Aligned_cols=578 Identities=23% Similarity=0.335 Sum_probs=466.5
Q ss_pred CCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeEE
Q 004815 117 SSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVI 196 (729)
Q Consensus 117 ~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~Al 196 (729)
.+|+.++++++++++.||..+++. +.|.++++++++... ....+||.++..|.++++|+++++.+|+++|+
T Consensus 2 ~~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~~-------~~~~~wf~~~~~n~~~~~l~~~~~~~p~~~A~ 72 (629)
T PRK10524 2 MSYSEFYQRSIDDPEAFWAEQARR--IDWQTPFTQVLDYSN-------PPFARWFVGGRTNLCHNAVDRHLAKRPEQLAL 72 (629)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHh--CCcccCchhhccCCC-------CCcCccCCCcEeeHHHHHHHHhhccCCCCeEE
Confidence 478999999999999999999996 579999999875422 34578999999999999999999899999999
Q ss_pred EEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHH
Q 004815 197 RWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISA 276 (729)
Q Consensus 197 ~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~ 276 (729)
++.+. .++..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+
T Consensus 73 ~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~ 150 (629)
T PRK10524 73 IAVST--ETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAA 150 (629)
T ss_pred EEEcC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHH
Confidence 98542 1123458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEEEecceecCCccccchhhHHhh---c---CCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccc
Q 004815 277 RLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA---Q---APLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 350 (729)
Q Consensus 277 ~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (729)
++++++++++|+++...+.++.++....+.+. . ...++++....... .........|.++...... ...+
T Consensus 151 ~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~ 226 (629)
T PRK10524 151 RIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM-ARVAGRDVDYATLRAQHLG---ARVP 226 (629)
T ss_pred HHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCCcccHHHHHhcCCC---CCCC
Confidence 99999999999988776666655544433322 1 22344443211110 0111123456665432211 1122
Q ss_pred cccCCCCCeeEEEeccCCCCCCceEEeCCchHHH-HHHHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEEE
Q 004815 351 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK-AAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 428 (729)
Q Consensus 351 ~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl 428 (729)
.....+++++||+|||||||.||||+++|++++. ........+++.++|++++.++++|.++. +.++++|+.|+++++
T Consensus 227 ~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~ 306 (629)
T PRK10524 227 VEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIM 306 (629)
T ss_pred ceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEE
Confidence 2335678999999999999999999999999754 33444456789999999999999999886 678999999999999
Q ss_pred eCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeee
Q 004815 429 YNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIE 503 (729)
Q Consensus 429 ~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~ 503 (729)
+++. +++..++++|+++++|++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.++ ++++|
T Consensus 307 ~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~v~~ 385 (629)
T PRK10524 307 YEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALG-VPVID 385 (629)
T ss_pred ECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhcC-CCeEe
Confidence 8764 367789999999999999999999999887542 23456889999999999999999998887664 78999
Q ss_pred cccccccccccccCCc---ccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeecc----ccCCCcccccccc
Q 004815 504 YCGGTEIGGGFITGSL---LQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPL----IFGASSTLLNANH 575 (729)
Q Consensus 504 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~----~~~~~~~~~~~~~ 575 (729)
.||+||++..++.... ......+++|+|++|++++|+|+ +|+++|.|+. |||+|++. ++. .++++++.
T Consensus 386 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~--Gel~i~gp~~~~~~~--~~~~~~~~ 461 (629)
T PRK10524 386 NYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEK--GVLVIEGPLPPGCMQ--TVWGDDDR 461 (629)
T ss_pred ccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCc--EEEEEcCCCChhhcC--CccCChHH
Confidence 9999999843332222 12234578999999999999998 8999999987 99999654 332 23445544
Q ss_pred c-ccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 576 Y-DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 576 ~-~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
+ +.+|... +.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+|+|++++++..|
T Consensus 462 ~~~~~~~~~----~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~d~~~g- 535 (629)
T PRK10524 462 FVKTYWSLF----GRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESIS-SHPAVAEVAVVGVKDALKG- 535 (629)
T ss_pred HHHhhhccC----CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHH-hCCCcceEEEEccccCCCC-
Confidence 3 3333321 3359999999999999999999999999999999999999999995 9999999999999998777
Q ss_pred eeEEEEEEecCCCCCCC----ChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 655 EQLTIVVVFKDSNYTPP----DLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~----~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+.+++||++++ +. .. ...++.+.|+++++++|++|++|..|+++++||+|+|||++|++|+++++.
T Consensus 536 ~~~~~~vv~~~-~~-~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 605 (629)
T PRK10524 536 QVAVAFVVPKD-SD-SLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEG 605 (629)
T ss_pred eEEEEEEEECC-CC-ccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 88999999886 32 11 234677788889999999999999999999999999999999999998764
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-79 Score=709.99 Aligned_cols=580 Identities=26% Similarity=0.407 Sum_probs=468.0
Q ss_pred CCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeE
Q 004815 116 ISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIV 195 (729)
Q Consensus 116 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~A 195 (729)
+.+|..+.++++++++.||..+.+. +.|.+++.++++. .....+||.++..|.++++|+++++++||++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~--------~~~~~~w~~~~~~n~~~~~l~~~~~~~p~~~A 85 (637)
T PRK00174 16 MEQYKALYQESVEDPEGFWAEQAKR--LDWFKPFDTVLDW--------NAPFIKWFEDGELNVSYNCLDRHLKTRGDKVA 85 (637)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHh--cCeecCCcccccC--------CCCCCccCCCCEeEHHHHHHHHhhccCCCCeE
Confidence 3567999999999999999999887 4688888887653 13568999999999999999999999999999
Q ss_pred EEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHH
Q 004815 196 IRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEIS 275 (729)
Q Consensus 196 l~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~ 275 (729)
+++.+.. .+..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.
T Consensus 86 l~~~~~~--~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~ 163 (637)
T PRK00174 86 IIWEGDD--PGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALA 163 (637)
T ss_pred EEEECCC--CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHH
Confidence 9986541 12346899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEEEecceecCCccccchhhHHhh---cC--CcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccc
Q 004815 276 ARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA---QA--PLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 350 (729)
Q Consensus 276 ~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (729)
+++++++++++|+++......+.++....+.+. .+ ..++++...+..... .......|+++..... ...+
T Consensus 164 ~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~ 238 (637)
T PRK00174 164 DRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDW-VEGRDLWWHELVAGAS----DECE 238 (637)
T ss_pred HHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCc-CCCCcccHHHHHhhcC----CCCC
Confidence 999999999999988766555555444433322 22 123333322211110 0112345666654321 1223
Q ss_pred cccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHH-HHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEEE
Q 004815 351 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAA-ADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 428 (729)
Q Consensus 351 ~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl 428 (729)
.....+++++||+|||||||+||||+++|++++... ......+++.++|++++.++++|..+. +.++.+|.+|+++++
T Consensus 239 ~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~ 318 (637)
T PRK00174 239 PEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLM 318 (637)
T ss_pred ccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEE
Confidence 344568899999999999999999999999976544 334456789999999999999999987 578999999999999
Q ss_pred eCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC--CCCCCCCccEEEeecCCCCHhHHHHHHhccC--CCCe
Q 004815 429 YNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--YKPV 501 (729)
Q Consensus 429 ~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~--~~~l 501 (729)
+++. +++..++++|+++++|++.++|++++.|++.... ...++++||.+++|||++++++++++.+.++ .+++
T Consensus 319 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i 398 (637)
T PRK00174 319 FEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPI 398 (637)
T ss_pred ECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCce
Confidence 8753 3678899999999999999999999999876432 3456789999999999999999998887765 3789
Q ss_pred eecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCC-cccccccccccc
Q 004815 502 IEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGAS-STLLNANHYDVY 579 (729)
Q Consensus 502 ~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~-~~~~~~~~~~~~ 579 (729)
++.||+||++..++..... .....+++|+|++|++++|+|++|+++|.|+. |||+|++.+.+.. .|+++++.+...
T Consensus 399 ~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~--Gel~v~g~~p~~~~gy~~~~~~~~~~ 476 (637)
T PRK00174 399 VDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEG--GNLVIKDPWPGMMRTIYGDHERFVKT 476 (637)
T ss_pred EecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCc--EEEEEcCCCCcccccccCCHHHHHHh
Confidence 9999999998755433221 12345689999999999999999999999987 9999965322111 235566554433
Q ss_pred cccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEE
Q 004815 580 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 659 (729)
Q Consensus 580 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a 659 (729)
|.. ....||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++..| +.++|
T Consensus 477 ~~~----~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~~~V~~~~Vvg~~~~~~g-~~~~a 550 (637)
T PRK00174 477 YFS----TFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKVAEAAVVGRPDDIKG-QGIYA 550 (637)
T ss_pred hhc----CCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEE
Confidence 321 11239999999999999999999999999999999999999999995 9999999999999998887 89999
Q ss_pred EEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 660 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 660 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
||++.+ +. . ..+++.+.|+++++++|++|++|..|+++++||+|+|||++|++|++++.+.
T Consensus 551 ~vv~~~-~~-~-~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 551 FVTLKG-GE-E-PSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred EEEECC-CC-C-CCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 999987 43 2 2345666788889999999999999999999999999999999999987653
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-81 Score=842.10 Aligned_cols=642 Identities=17% Similarity=0.177 Sum_probs=521.5
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCCCCchhheeeeeecCCCCC-----C-CCCccCCh
Q 004815 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGP-----D-PPAWIPDP 88 (729)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~-----~-~~~~~~~~ 88 (729)
.+++++..++..+|.++|+++++..++ +||++||+++++.++..|+.++|++||..++..... + .....+..
T Consensus 967 tlplr~~~~~~~t~~~ll~~v~~~~~~a~~h~~~p~~~i~~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (4334)
T PRK05691 967 TQVLRAQLDGRLPFTALLAQVRQATLGAQAHQDLPFEQLVEALPQAREQGLFQVMFNHQQRDLSALRRLPGLLAEELPWH 1046 (4334)
T ss_pred eeeEEEecCCCCCHHHHHHHHHHHHHHHHhhccCCHHHHHHHhCccCCCCceeEEEEcccCCccccccCCCceeeeeccc
Confidence 356777788889999999999998877 999999999999999999999999999887654311 0 00011111
Q ss_pred hhhhhCcHHHHHHHh-ccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCC
Q 004815 89 EAAKVTNVGKLLQTR-GEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNP 166 (729)
Q Consensus 89 ~~~~~~~l~~~~~~~-~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (729)
....++||.+.+... ++.+...+ |+. ++|+..+++++..+|..+|+.+. +.|...+....+...++...
T Consensus 1047 ~~~~~~~l~l~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~~~----~~p~~~~~~l~l~~~~~~~~ 1117 (4334)
T PRK05691 1047 SREAKFDLQLHSEEDRNGRLTLSFDYAA-----ELFDAATIERLAEHFLALLEQVC----EDPQRALGDVQLLDAAERAQ 1117 (4334)
T ss_pred CCcccceEEEEEEECCCCcEEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHH----hCcccchhhhcCCCHHHHHH
Confidence 233577877765543 34577777 988 99999999999999999999873 44555555544433333333
Q ss_pred CCCcCCCCc---chHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Q 004815 167 GGQWLPGAF---VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMP 243 (729)
Q Consensus 167 ~~~~~~~~~---~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~ 243 (729)
+..|+.... .....++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++|++|+|+++
T Consensus 1118 l~~~~~~~~~~~~~~l~~~~~~~a~~~p~~~Al~~~~~--------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~ 1189 (4334)
T PRK05691 1118 LAQWGQAPCAPAQAWLPELLNEQARQTPERIALVWDGG--------SLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAE 1189 (4334)
T ss_pred HHhccCCCCCCccCCHHHHHHHHHHhCCCCeEEEECCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Confidence 456764432 23456788889999999999999877 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCc
Q 004815 244 MNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSF 323 (729)
Q Consensus 244 ~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 323 (729)
|++++++++|||+|+|++|+|+||.+|.+++.+++++++++++|+++......... .....+.+...
T Consensus 1190 ~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~---------~~~~~~~~~~~---- 1256 (4334)
T PRK05691 1190 RSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA---------EGVSAIALDSL---- 1256 (4334)
T ss_pred CCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc---------cCceEEeeccc----
Confidence 99999999999999999999999999999999999999999999987532111000 00001111100
Q ss_pred ccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEE
Q 004815 324 SMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAW 403 (729)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~ 403 (729)
... . .....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++
T Consensus 1257 ---------~~~-----~---~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~ 1319 (4334)
T PRK05691 1257 ---------HLD-----S---WPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQ 1319 (4334)
T ss_pred ---------ccc-----c---cCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 000 0 00111223456799999999999999999999999999999999988999999999999
Q ss_pred ccCcchhhhHHHHHHHhhcCceEEEeCC--CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeec
Q 004815 404 PTNLGWMMGPWLVYASLLNGASIALYNG--SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481 (729)
Q Consensus 404 ~~~~~~~~~~~~i~~~L~~G~~lvl~~~--~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gG 481 (729)
++|++|+.+++++|.+|+.|+++++++. ..++..+++.|++++||++.++|++++.|.+... ...+++||.+++||
T Consensus 1320 ~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gG 1397 (4334)
T PRK05691 1320 KAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGG 1397 (4334)
T ss_pred eCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEee
Confidence 9999999999999999999999999864 3477889999999999999999999999986532 33578999999999
Q ss_pred CCCCHhHHHHHHhccCCCCeeecccccccccccccCCc-ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEee
Q 004815 482 EASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS 560 (729)
Q Consensus 482 e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~ 560 (729)
|++++++.+++...+++++++|.||+||+++.++.... .......++|+|++|++++|+|++++++|.|++ |||+|+
T Consensus 1398 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~--GEL~i~ 1475 (4334)
T PRK05691 1398 EALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNLLPPGVA--GELCIG 1475 (4334)
T ss_pred cCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEECCCCCCCCCCCc--eEEEec
Confidence 99999999999888888899999999999876554332 223345789999999999999999999999997 999997
Q ss_pred ccccCCCcccccccccccccccccCC-CCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCe
Q 004815 561 PLIFGASSTLLNANHYDVYFSGMPSR-NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNV 639 (729)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~f~~~p~~-~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V 639 (729)
+..+..+ |+++++.|+++|..+|+. +|.+||+|||+|++++||+++|+||+|+|||++|+||+|+|||++|. +||+|
T Consensus 1476 G~~v~~G-Yl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~-~~~~V 1553 (4334)
T PRK05691 1476 GAGLARG-YLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLL-AQPGV 1553 (4334)
T ss_pred Ccccchh-hcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHH-hCCCc
Confidence 6665544 467899999999998874 47799999999999999999999999999999999999999999995 99999
Q ss_pred eeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHH
Q 004815 640 LETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 719 (729)
Q Consensus 640 ~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~ 719 (729)
.+|+|++..+. .+ +.++||++... +. ..+.++++ ++|+++||.||+|+.|+++++||+|+||||||++|++.
T Consensus 1554 ~~a~v~~~~~~-~~-~~lva~~~~~~-~~-~~~~~~l~----~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1554 AQAAVLVREGA-AG-AQLVGYYTGEA-GQ-EAEAERLK----AALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred ceEEEEEeeCC-CC-CEEEEEEEeCC-CC-CCCHHHHH----HHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCcc
Confidence 99999876544 44 68999998876 33 23444444 46888999999999999999999999999999999764
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=657.60 Aligned_cols=587 Identities=33% Similarity=0.492 Sum_probs=500.6
Q ss_pred CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCC-C
Q 004815 112 YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKR-S 190 (729)
Q Consensus 112 y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 190 (729)
|...+++|..|+++++++++.||...++.+... ..++.. .... -.......|+++...|.+++|++++... .
T Consensus 6 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~-~~~~~~--~~~~----~~~~~~~~w~~g~~ln~~~n~~~~~~~~~~ 78 (626)
T KOG1175|consen 6 YKNSLSSYREFYRFSVEDPERFWGEVAKELHWK-FPWPRC--NKDE----NKGNPFTKWFPGAFLNACYNCLDRHIKEKG 78 (626)
T ss_pred cCCCHHHHHHHHhhcccCHHHHHHHhhhhhhcc-cCcccc--cccc----ccCCCCccccccchhhhhHhhhhhhhhhcC
Confidence 666778999999999999999999999986322 222211 1111 1135568899999999999999998644 5
Q ss_pred CCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCC
Q 004815 191 LDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270 (729)
Q Consensus 191 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~ 270 (729)
++++|+++.+.. .+....+||.||.+++.++|..|.+.|+++||+|++.||+.+++++++|||.++|++.+++...++
T Consensus 79 ~~~~a~~~~~~~--~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs 156 (626)
T KOG1175|consen 79 GDKVAIIFEGNE--GGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFS 156 (626)
T ss_pred CCCcEEEEEecC--CCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCC
Confidence 999999998763 233334999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccc
Q 004815 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 350 (729)
Q Consensus 271 ~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (729)
+..+..++.++++++|+|.+...+.++.++....+.+.+.....................+.+|++++..... ..+
T Consensus 157 ~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~----~~~ 232 (626)
T KOG1175|consen 157 AKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKASP----EHP 232 (626)
T ss_pred HHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcCC----CCC
Confidence 9999999999999999999999999999998887777665433222221111111222346778877665543 334
Q ss_pred cccCCCCCeeEEEeccCCCCCCceEEeCCch-HHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH-HHHHHhhcCceEEE
Q 004815 351 AVEQPVEAFTNILFSSGTTGEPKAIPWTNAT-PFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LVYASLLNGASIAL 428 (729)
Q Consensus 351 ~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~-l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~i~~~L~~G~~lvl 428 (729)
+...+.+|+.+|+|||||||.||||.+++.+ ++..+.....+++++++|++++++.++|+.+.+ ..+++|++|+|+++
T Consensus 233 ~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl 312 (626)
T KOG1175|consen 233 CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVL 312 (626)
T ss_pred ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEE
Confidence 6788899999999999999999999999876 566777777889999999999999999999995 57789999999999
Q ss_pred eCCCC-ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC--CCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecc
Q 004815 429 YNGSP-LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYC 505 (729)
Q Consensus 429 ~~~~~-~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 505 (729)
+++.+ ++..+++.+.+++||++++.|+.++.|.+.... ...++++||++.++||++.++.+.|+.+.+...++++.|
T Consensus 313 ~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~ 392 (626)
T KOG1175|consen 313 YEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETY 392 (626)
T ss_pred EcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhce
Confidence 99887 888999999999999999999999988776543 344457799999999999999999999888755799999
Q ss_pred cccccccccccCCccc-ccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeecccc-CCCccc-cccc-ccccccc
Q 004815 506 GGTEIGGGFITGSLLQ-AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIF-GASSTL-LNAN-HYDVYFS 581 (729)
Q Consensus 506 G~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~-~~~~~~-~~~~-~~~~~f~ 581 (729)
|+||+|..++...... +..+++.|.|.+|+.+.|+|++|++++.+. |.|+|++.+..+ +....+ +|++ ..+.||.
T Consensus 393 ~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~ 471 (626)
T KOG1175|consen 393 GQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFK 471 (626)
T ss_pred eeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcc
Confidence 9999999888777766 788899999999999999999999999875 469999977666 544444 4455 4577777
Q ss_pred cccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEE
Q 004815 582 GMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVV 661 (729)
Q Consensus 582 ~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~v 661 (729)
+.|. +|.|||.|++|+||+++++||.||+||++|+||++.|||++|. .||.|.|++||+.+++..| +.++|||
T Consensus 472 k~pg-----~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~-~hp~VaEsAvVg~p~~~~g-e~v~aFv 544 (626)
T KOG1175|consen 472 KFPG-----YYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALV-EHPAVAESAVVGSPDPIKG-EVVLAFV 544 (626)
T ss_pred cCCc-----eEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHh-hCcchhheeeecCCCCCCC-eEEEEEE
Confidence 7663 8999999999999999999999999999999999999999995 9999999999999999988 9999999
Q ss_pred EecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 662 VFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 662 v~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++++ +. .+.++|++.|+.++++.+.+|++|+.|++++.||+|.||||.|++|++.++.
T Consensus 545 vl~~-g~--~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g 602 (626)
T KOG1175|consen 545 VLKS-GS--HDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASG 602 (626)
T ss_pred EEcC-CC--CChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhcc
Confidence 9999 64 6889999999999999999999999999999999999999999999999875
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-77 Score=646.90 Aligned_cols=507 Identities=24% Similarity=0.281 Sum_probs=427.2
Q ss_pred ccCCCCCC-eEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcC--CCCCCEEEEECCCCHHHHHHHHHHHHcCCEE
Q 004815 186 NSKRSLDD-IVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG--LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262 (729)
Q Consensus 186 ~~~~~pd~-~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~G--v~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~ 262 (729)
.+...+++ +++++.... .+.+||+|+.+++.|+|.+|.++| +++||+|+|++||++++++.+|||+.+||++
T Consensus 25 ~~~~~~~~~~~~i~~~~~-----g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~ 99 (537)
T KOG1176|consen 25 PAFVYLDRNTSLVYQDSD-----GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVL 99 (537)
T ss_pred cccccccCcceEEEecCC-----CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccc
Confidence 33334444 888887630 139999999999999999999876 8999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcC-HHHHHHHh
Q 004815 263 VSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDIS-WLDFLERV 341 (729)
Q Consensus 263 vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~ 341 (729)
.|++|.+.+.++.+.+++++++++|++.... +........+...++++................. +.++....
T Consensus 100 ~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~------~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T KOG1176|consen 100 NPLNPRLTASEIAKQLKDSKPKLIFVDEDFY------DKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEG 173 (537)
T ss_pred cccCcccCHHHHHHHHHhcCCeEEEEcCchH------HHHHHHHhhcCCceEEEecccCccccccccccccchhhccccC
Confidence 9999999999999999999999999998543 3333334444455555554311111111111111 33322221
Q ss_pred hccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhh
Q 004815 342 RKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLL 421 (729)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~ 421 (729)
.. .. ..+...+|++.++|||||||.||||++||+++............++..|+.++.+|+.|..|++.++.+++
T Consensus 174 ~~----~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~ 248 (537)
T KOG1176|consen 174 LP----DG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLL 248 (537)
T ss_pred CC----cc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHH
Confidence 11 11 45667799999999999999999999999999888777777777888999999999999999988888777
Q ss_pred cCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCe
Q 004815 422 NGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV 501 (729)
Q Consensus 422 ~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l 501 (729)
.|++.++....+++..+++.|++|+||++.++|.++..|++.+.....+++++|.+.+||.++++++.+++.++++...+
T Consensus 249 ~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v 328 (537)
T KOG1176|consen 249 AGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTV 328 (537)
T ss_pred hCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceE
Confidence 77777777777799999999999999999999999999999876777889999999999999999999999999998899
Q ss_pred eecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccc
Q 004815 502 IEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFS 581 (729)
Q Consensus 502 ~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~ 581 (729)
.+.||+||+++..+.+........+++|++++|+++.|.++.|+.+++++. ||||+.++....+ |++||+.|++.|.
T Consensus 329 ~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~--GEI~vrg~~imkG-Y~~NpeaT~~~~~ 405 (537)
T KOG1176|consen 329 IQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQT--GEICVRGPQVMKG-YLKNPEATKEAFD 405 (537)
T ss_pred EEeeccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCc--eEEEEECcccchh-hcCChHHHHhhcc
Confidence 999999999965555444333578899999999999999999999999997 9999966655433 4789999999898
Q ss_pred cccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEE
Q 004815 582 GMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVV 661 (729)
Q Consensus 582 ~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~v 661 (729)
++ | ||+|||+|++|+||+|++.+|++|+||.+|+.|.|.|||++|. .||.|.||||++++|+..| +.++|||
T Consensus 406 ~~----G--W~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~-~hP~V~eaaVvgipDe~~G-e~p~A~V 477 (537)
T KOG1176|consen 406 DD----G--WFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLL-THPDVLEAAVVGIPDEVWG-ETPAAFV 477 (537)
T ss_pred cC----C--ccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHH-hCCCccEEEEEcccccccC-CcceEEE
Confidence 54 2 9999999999999999999999999999999999999999996 9999999999999999999 9999999
Q ss_pred EecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhh
Q 004815 662 VFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 725 (729)
Q Consensus 662 v~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~ 725 (729)
|.++ |. ..++++++++ ++++|++|++|..++|+++||+|+||||.|+.|++.+.++..
T Consensus 478 V~k~-g~-~lte~di~~~----v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~~ 535 (537)
T KOG1176|consen 478 VLKK-GS-TLTEKDIIEY----VRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLGS 535 (537)
T ss_pred EecC-CC-cCCHHHHHHH----HHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhccc
Confidence 9998 66 6888888885 778899999999999999999999999999999999988654
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-73 Score=575.23 Aligned_cols=515 Identities=21% Similarity=0.214 Sum_probs=429.8
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++++-.+++-||+.|+++..++ .++||+|+.+.+.++|..|..+|+++||||+|..||+.+|+..+|||.+
T Consensus 51 Tigq~l~~~t~~v~dkea~Vf~~eg------~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~ 124 (596)
T KOG1177|consen 51 TIGQLLETTTERVPDKEAAVFDHEG------IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACAR 124 (596)
T ss_pred cHHHHHHHHhhccCcceEEEEeecc------chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHH
Confidence 4456677777889999999998774 3799999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhh----------------cCCcEEEEcCCCC
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA----------------QAPLAIVIPAKGS 321 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~~~~~ 321 (729)
+|.+.|++||.|+.+++++.|+..+++++|+...+. .-...+.+.+. ++....++....+
T Consensus 125 AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k----~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed 200 (596)
T KOG1177|consen 125 AGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFK----TQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED 200 (596)
T ss_pred hceEEeccCcccccHHHHHHHhhcCeEEEEccchhh----hchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC
Confidence 999999999999999999999999999999987532 11111222211 1222222222211
Q ss_pred CcccccCCCCcCHHHHHHHhhccccCc--cccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCC
Q 004815 322 SFSMKLRDGDISWLDFLERVRKLKENE--FAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKAD 399 (729)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d 399 (729)
...++...++|++...+...... .-.....|++++.|.|||||||.|||+.+||-|++|+......++++...+
T Consensus 201 ----~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~ 276 (596)
T KOG1177|consen 201 ----HPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKH 276 (596)
T ss_pred ----CcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcce
Confidence 11356777888887655321111 122346789999999999999999999999999999999999999999999
Q ss_pred EEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEE
Q 004815 400 IVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 478 (729)
Q Consensus 400 ~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~ 478 (729)
+++...|+.|.++. ..++++|+.|+|+|++...+++.+.++.|+++++|.++.+|+|+..|++.+.....+++++|.++
T Consensus 277 ~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~v 356 (596)
T KOG1177|consen 277 RICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGV 356 (596)
T ss_pred EEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhhe
Confidence 99999999999995 78899999999999999899999999999999999999999999999999888899999999999
Q ss_pred eecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcc--cccccccccCCCCCcEEEEEcCCCCccCCCCCceeE
Q 004815 479 STGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL--QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 556 (729)
Q Consensus 479 ~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGe 556 (729)
.||+++++++.+.+.....-..+...||.||++...+..... ......++|..+++.+..|+|++|.++|.|++ ||
T Consensus 357 igGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~--Ge 434 (596)
T KOG1177|consen 357 IGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTK--GE 434 (596)
T ss_pred eCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCCC--ce
Confidence 999999999999888765534588999999999755544432 23445689999999999999999999999998 99
Q ss_pred EEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCC
Q 004815 557 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 636 (729)
Q Consensus 557 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~ 636 (729)
|++.+.....+ |+.+++.|.+... .+|||+|||.|.+|++|+++++||++|+|+.+|.+|+|.|||+.|. +|
T Consensus 435 l~iRGY~tMl~-Ywg~~~kT~eti~------~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~-~h 506 (596)
T KOG1177|consen 435 LLIRGYSTMLG-YWGEEEKTKETIG------NDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLN-KH 506 (596)
T ss_pred EEEEechhhee-ecCCcccchhhcc------cccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHh-hC
Confidence 99965422221 2233444544333 4679999999999999999999999999999999999999999996 99
Q ss_pred CCeeeeEEEeecCCCCCceeEEEEEEecCCCCC-CCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHH
Q 004815 637 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYT-PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRV 715 (729)
Q Consensus 637 p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~-~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~ 715 (729)
|.|.++.||+++|+..| +.+||+|-+++ +.. ..+.++|++ +++.+|..|++|+.|++++++|+|.+|||.|-+
T Consensus 507 p~V~~a~VVGV~D~R~G-E~VCA~vRLqe-~~e~~~t~E~lKa----~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFe 580 (596)
T KOG1177|consen 507 PLVKEAHVVGVPDERLG-EEVCACVRLQE-GAEGKTTAETLKA----MCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFE 580 (596)
T ss_pred CCeeeEEEEccCCCccc-ceEEEEEEeec-cccccccHHHHHH----HHhcccccccCCcEEEEeccCcccccccchhHH
Confidence 99999999999999999 89999999988 541 135555555 678889999999999999999999999999999
Q ss_pred HHHHHHh
Q 004815 716 LRKQLAQ 722 (729)
Q Consensus 716 L~~~~~~ 722 (729)
+++++..
T Consensus 581 ir~~~k~ 587 (596)
T KOG1177|consen 581 IREMSKG 587 (596)
T ss_pred HHHHHHh
Confidence 9999874
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-71 Score=635.06 Aligned_cols=519 Identities=25% Similarity=0.354 Sum_probs=430.1
Q ss_pred CcCCCCcchHHhhhhccccC-CCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Q 004815 169 QWLPGAFVNPAKNCLSVNSK-RSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (729)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~-~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (729)
+|+.+...|.++++++++++ ..|+++|+++.+.. ..+++||+||.++++++|.+|.++|+++||+|+|+++|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~ 110 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRHADGGRKDKVALRYLDAS----RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPE 110 (570)
T ss_pred ccCCCCceeHHHHHHHHhhccCCCCceEEEEECCC----CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHH
Confidence 58888899999999999886 57999999986531 23489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCccc
Q 004815 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSM 325 (729)
Q Consensus 248 ~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~ 325 (729)
+++++|||+++|++++|+++.++.+++.+++++++++++|+++........ ...+. .++++.....
T Consensus 111 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~---- 178 (570)
T PRK04319 111 LYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--------DDLPSLKHVLLVGEDVE---- 178 (570)
T ss_pred HHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--------hcCCCceEEEEECCCcC----
Confidence 999999999999999999999999999999999999999998764321110 01111 2222221110
Q ss_pred ccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEcc
Q 004815 326 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPT 405 (729)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~ 405 (729)
...+...+.+++..... ........++++++|+|||||||.||||+++|+++++.+......+++.++|++++..
T Consensus 179 -~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~ 253 (570)
T PRK04319 179 -EGPGTLDFNALMEQASD----EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTA 253 (570)
T ss_pred -CCcCccCHHHHHhhcCC----cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecC
Confidence 11234456665543221 2223345678999999999999999999999999998887777888999999999999
Q ss_pred CcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecC
Q 004815 406 NLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGE 482 (729)
Q Consensus 406 ~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe 482 (729)
+++|..+. +.++.+|..|+++++.++..++..+++.|+++++|++.++|++++.|.+... ....++++||.+++||+
T Consensus 254 ~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~ 333 (570)
T PRK04319 254 DPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGE 333 (570)
T ss_pred ChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEccc
Confidence 99999886 6789999999999998877889999999999999999999999999987542 23456889999999999
Q ss_pred CCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeecc
Q 004815 483 ASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPL 562 (729)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~ 562 (729)
++++++.+++.+.++ .++++.||+||++..+...........+++|+|++|++++|+|++++++|.|+. |||++.++
T Consensus 334 ~l~~~~~~~~~~~~g-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~--Gel~i~~~ 410 (570)
T PRK04319 334 PLNPEVVRWGMKVFG-LPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRM--GNLAIKKG 410 (570)
T ss_pred CCCHHHHHHHHHHhC-CCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCc--eEEEEcCC
Confidence 999999998887665 789999999999865443333223345789999999999999999999999987 99999642
Q ss_pred ccCC-CcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeee
Q 004815 563 IFGA-SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLE 641 (729)
Q Consensus 563 ~~~~-~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~ 641 (729)
+.+. ..|+++++.++.+|.. | ||+|||+|++++||+++++||.||+||++|++|+|.|||++|. +||.|.+
T Consensus 411 ~~~~~~GY~~~~~~~~~~~~~-----g--w~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~-~~~~V~~ 482 (570)
T PRK04319 411 WPSMMRGIWNNPEKYESYFAG-----D--WYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLM-EHPAVAE 482 (570)
T ss_pred CChHHhHhcCCHHHhhhhhcC-----C--ceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHh-hCCCeee
Confidence 1111 1245677777777751 3 9999999999999999999999999999999999999999995 9999999
Q ss_pred eEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHH
Q 004815 642 TAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721 (729)
Q Consensus 642 a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~ 721 (729)
++|++.+++..| +.+++|++..+ +. ...+++.+.++++++++|+.|++|..|+++++||+|++||++|++|+++..
T Consensus 483 ~~v~g~~~~~~g-~~~~a~v~~~~-~~--~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 483 AGVIGKPDPVRG-EIIKAFVALRP-GY--EPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWEL 558 (570)
T ss_pred cceecccCcCCc-eEEEEEEEECC-CC--CCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHh
Confidence 999999998887 89999999887 43 223456777888899999999999999999999999999999999999976
Q ss_pred hh
Q 004815 722 QL 723 (729)
Q Consensus 722 ~~ 723 (729)
++
T Consensus 559 ~~ 560 (570)
T PRK04319 559 GL 560 (570)
T ss_pred CC
Confidence 54
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-71 Score=628.36 Aligned_cols=507 Identities=24% Similarity=0.260 Sum_probs=415.7
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
.....|.++++++|+++|+++.+..+ ++||+||+++++++|++|++.||++||+|+|+++|+++++++++||++
T Consensus 12 ~~~~~l~~~a~~~~~~~a~~~~~~~~------~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~ 85 (534)
T COG0318 12 TLASLLERAARRNPDRPALIFLGRGG------RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALR 85 (534)
T ss_pred cHHHHHHHHHHhCCCceEEEEcCCCc------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 34566888889999999999988721 399999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCC-cCHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGD-ISWLD 336 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~ 336 (729)
+|++++|++|.+..+++.+++++++++++++++... +....+.........+........ .. ..+++
T Consensus 86 ~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 153 (534)
T COG0318 86 AGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA------ALLEAVAEALPVVLVVLLVGDADD------RLPITLEA 153 (534)
T ss_pred cCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccch------hHHHHHhccCCcceEEEecccccc------cccccHHH
Confidence 999999999999999999999999999999997521 122222222211111111111000 00 23444
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCC--CCCCCEEEEccCcchhhhHH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD--IRKADIVAWPTNLGWMMGPW 414 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~ 414 (729)
....... .........++++|+++|||||||.||||++||+|++.+.......++ +++.|+++..+|++|++|+.
T Consensus 154 ~~~~~~~---~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~ 230 (534)
T COG0318 154 LAAEGPG---PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLI 230 (534)
T ss_pred HhhccCC---cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHH
Confidence 4222111 111112267999999999999999999999999999988888888888 89999999999999999996
Q ss_pred H-HHHHhhcCceEEEeCC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCC-ccEEEeecCCCCHhHHHH
Q 004815 415 L-VYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSS-IRCFGSTGEASNVDEYLW 491 (729)
Q Consensus 415 ~-i~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~s-Lr~v~~gGe~l~~~~~~~ 491 (729)
. ++.++..|+++++..+ .+++..++..+.++++|++.++|+++..|+........++++ ||.++.||++++++++++
T Consensus 231 ~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~ 310 (534)
T COG0318 231 VGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLER 310 (534)
T ss_pred HHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHH
Confidence 4 5566999999999875 578889999999999999999999999999887666665665 999999999999999999
Q ss_pred HHhccCCCCeeecccccccccccccCCccc-ccccccccCCCCCcEEEEEcCCCC-ccCCCCCceeEEEeeccccCCCcc
Q 004815 492 LMGRALYKPVIEYCGGTEIGGGFITGSLLQ-AQSLAAFSTPAMGCKLFILGNDGC-PIPQNVPGMGELALSPLIFGASST 569 (729)
Q Consensus 492 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~v~d~~g~-~~p~g~~giGel~v~~~~~~~~~~ 569 (729)
+.++++..++++.||+||++..++...... ....+.+|+|+||++++|+|++++ ++| |.. |||+|.++.+-.+ |
T Consensus 311 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~v--Gei~irgp~v~~G-Y 386 (534)
T COG0318 311 FEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEV--GEIWVRGPNVMKG-Y 386 (534)
T ss_pred HHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCc--eEEEEECchhhhh-h
Confidence 999988668999999999997666555544 235567799999999999997765 566 775 9999965443322 4
Q ss_pred cccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecC
Q 004815 570 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 649 (729)
Q Consensus 570 ~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~ 649 (729)
+++++.|+..|.. ++||+|||+|++|+||++++.||.+|+||++|++|+|.|||++|. .||.|.+|+|++++|
T Consensus 387 ~~~pe~t~~~f~~------~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~-~~~~V~~aavvgvpd 459 (534)
T COG0318 387 WNRPEATAEAFDE------DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLA-EHPAVAEAAVVGVPD 459 (534)
T ss_pred cCChHHHHHhhcc------CCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHH-hCCCcceEEEEeCCC
Confidence 5677888777764 239999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceeEEEEEEecCCCC-CCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 650 PDGGPEQLTIVVVFKDSNY-TPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 650 ~~~g~~~l~a~vv~~~~~~-~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+..| +.++|++++++ +. ...+.+++++ +++++++.|++|+.++++++||+|++||++|++|++.+..
T Consensus 460 ~~~G-e~~~a~v~~~~-~~~~~~~~~~i~~----~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 460 ERWG-ERVVAVVVLKP-GGDAELTAEELRA----FLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred CccC-ceEEEEEEEcC-CCCCCCCHHHHHH----HHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 9998 99999999987 42 0235566666 5667899999999999999999999999999999999877
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-71 Score=635.57 Aligned_cols=496 Identities=22% Similarity=0.230 Sum_probs=406.4
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|+++++++||++|+++.++ ++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 50 ~~~~~~~~~a~~~pd~~Al~~~~~--------~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~ 121 (549)
T PRK07788 50 PFAGLVAHAARRAPDRAALIDERG--------TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGK 121 (549)
T ss_pred hHHHHHHHHHHHCCCceEEEECCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 456778888999999999998776 999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCc-EEEEcCCCCCcccccCCCCcCHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL-AIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
+|++++|+++.++.+++.+++++++++++|+++.... ....+....... .+........ ....+...+++
T Consensus 122 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 192 (549)
T PRK07788 122 VGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTD------LLSALPPDLGRLRAWGGNPDDDE---PSGSTDETLDD 192 (549)
T ss_pred cCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHH------HHHhhccccccceEEEEecCccc---cCCcCcccHHH
Confidence 9999999999999999999999999999999875321 111111111111 1111111100 11123455666
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 416 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i 416 (729)
+...... ...+..+++.++++|||||||+||||+++|+++.+.+.+....+++.++|+++...|++|..++..+
T Consensus 193 ~~~~~~~------~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 266 (549)
T PRK07788 193 LIAGSST------APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHL 266 (549)
T ss_pred HhcCCCC------CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHH
Confidence 6543211 1122346788999999999999999999999999988888788899999999999999999998888
Q ss_pred HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC--CCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
+.++..|+++++.. ..++..+++.|+++++|++.++|++++.|++.... ...++++||.+++||+++++++.+++.+
T Consensus 267 ~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 345 (549)
T PRK07788 267 TLAMALGSTVVLRR-RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALE 345 (549)
T ss_pred HHHHHhCCEEEECC-CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHH
Confidence 88999999999874 46888999999999999999999999999886543 4556889999999999999999999987
Q ss_pred ccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccc
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~ 574 (729)
.++ .+++|.||+||++..++...........++|+|++|++++|+|+++++++.|+. |||+|++.++..+| +++++
T Consensus 346 ~~~-~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gY-~~~~~ 421 (549)
T PRK07788 346 AFG-PVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVV--GRIFVGNGFPFEGY-TDGRD 421 (549)
T ss_pred HhC-ccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCe--EEEEEeCCCccccc-cCCCc
Confidence 765 689999999999865443332222345789999999999999999999999987 99999766544332 33332
Q ss_pred ccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 575 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
. .. .+| ||+|||+|++++||+++|+||+||+||++|++|+|.|||++|. .||+|.+|+|++.+++..|
T Consensus 422 ~--~~------~~g--~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~~~~~~~g- 489 (549)
T PRK07788 422 K--QI------IDG--LLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLA-GHPDVVEAAVIGVDDEEFG- 489 (549)
T ss_pred c--cc------cCC--ceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHH-hCCCeeEEEEECCcCcccc-
Confidence 2 11 123 9999999999999999999999999999999999999999995 9999999999999988877
Q ss_pred eeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHH
Q 004815 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 719 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~ 719 (729)
+.++|+|++++ +. ..+.+++++ +++++||+|++|..|+++++||+|++||++|++|+++
T Consensus 490 ~~~~a~vv~~~-~~-~~~~~~l~~----~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 490 QRLRAFVVKAP-GA-ALDEDAIKD----YVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred cEEEEEEEeCC-CC-CCCHHHHHH----HHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 89999999887 44 456566555 5778899999999999999999999999999999763
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=617.53 Aligned_cols=487 Identities=57% Similarity=1.016 Sum_probs=375.7
Q ss_pred CCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCC
Q 004815 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGS 321 (729)
Q Consensus 242 ~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 321 (729)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++......+..+...++........+++...+.
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 68999999999999999999999999999999999999999999999875322112222233332222222333321111
Q ss_pred CcccccCCCCcCHHHHHHHhhcc---ccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCC
Q 004815 322 SFSMKLRDGDISWLDFLERVRKL---KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKA 398 (729)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 398 (729)
........+...|.+++...... ......+....++++++|+|||||||.||||+++|++++.........++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 160 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG 160 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence 00000011234566665322110 000111122356899999999999999999999999988766666667889999
Q ss_pred CEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccE
Q 004815 399 DIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRC 476 (729)
Q Consensus 399 d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~ 476 (729)
|++++.+|++|+.+.+.++.+|..|+++++.++..++..+++.|+++++|++.++|+++..|++... ....++++||.
T Consensus 161 d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~ 240 (499)
T PLN03051 161 DVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240 (499)
T ss_pred CEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheE
Confidence 9999999999999988888999999999998765677889999999999999999999999987542 23456889999
Q ss_pred EEeecCCCCHhHHHHHHhccC-CCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCcee
Q 004815 477 FGSTGEASNVDEYLWLMGRAL-YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMG 555 (729)
Q Consensus 477 v~~gGe~l~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giG 555 (729)
+++||++++++..+++.+..+ +++++|.||+||++..++..........+++|+|.+|++++|+|++|+++|.|+..+|
T Consensus 241 i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~G 320 (499)
T PLN03051 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVG 320 (499)
T ss_pred EEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcce
Confidence 999999999999887765222 3679999999998754333222223345789999999999999999999999852249
Q ss_pred EEEeeccccCCCcccccccccccccccccCC--CCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHh
Q 004815 556 ELALSPLIFGASSTLLNANHYDVYFSGMPSR--NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN 633 (729)
Q Consensus 556 el~v~~~~~~~~~~~~~~~~~~~~f~~~p~~--~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~ 633 (729)
||++.+++++...+|++++.++.+|..+|.. ++.+||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.
T Consensus 321 el~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~ 400 (499)
T PLN03051 321 EVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACD 400 (499)
T ss_pred EEEEecCcCCCCccccCCcccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHH
Confidence 9999777654322333555555555555543 56789999999999999999999999999999999999999999995
Q ss_pred cCCCCeeeeEEEeecCCCCCceeEEEEE---EecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCCh
Q 004815 634 AVDSNVLETAAIGVPPPDGGPEQLTIVV---VFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNK 710 (729)
Q Consensus 634 ~~~p~V~~a~Vv~~~~~~~g~~~l~a~v---v~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GK 710 (729)
..||+|.+|+|++++++..|++.++||| ++++ +....+.++++++++++++++|++|++|..|+++++||+|++||
T Consensus 401 ~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~-~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GK 479 (499)
T PLN03051 401 RAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKK-GFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNK 479 (499)
T ss_pred hcCCCcceEEEEEecCCCCCceEEEEEEEcceecc-cccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCcc
Confidence 2399999999999999887756789998 7766 42125678999999999999999988888899999999999999
Q ss_pred hhHHHHHHHHHh-hhhcCCC
Q 004815 711 VMRRVLRKQLAQ-LDQNSKL 729 (729)
Q Consensus 711 idR~~L~~~~~~-~~~~~~~ 729 (729)
|+|++|++.+.+ ++-+|||
T Consensus 480 i~r~~L~~~~~~~~~~~~~~ 499 (499)
T PLN03051 480 LLRRVLRDQLKKELSGRSKL 499 (499)
T ss_pred HHHHHHHHHHHHhhccccCC
Confidence 999999998876 6657765
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-70 Score=628.49 Aligned_cols=522 Identities=20% Similarity=0.171 Sum_probs=408.8
Q ss_pred hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
....++|.++++++|+++|+++....+.....+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus 25 ~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~ 104 (632)
T PRK07529 25 ASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGE 104 (632)
T ss_pred CCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 34567888899999999999985432222234599999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCc--EEEEcCCCCCcc---cc-----
Q 004815 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL--AIVIPAKGSSFS---MK----- 326 (729)
Q Consensus 257 ~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~---~~----- 326 (729)
++| +++|++|.++.+++.+++++++++++|+++..... .............+.. ++.+........ ..
T Consensus 105 ~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 182 (632)
T PRK07529 105 AAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGT-DIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIR 182 (632)
T ss_pred HhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCc-hHHHHHHHHHhcCCcceeEEEecCcccccccccccccccc
Confidence 999 56999999999999999999999999998753210 0001111112222221 222221110000 00
Q ss_pred --cCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEc
Q 004815 327 --LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWP 404 (729)
Q Consensus 327 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 404 (729)
...+...|.+.+..... ..........++++|+++|||||||.||||+++|+++++........+++.++|++++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 260 (632)
T PRK07529 183 RKAHARILDFDAELARQPG--DRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCG 260 (632)
T ss_pred cccccccCCHHHHHhcCCC--ccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 11123445554443211 11112233467999999999999999999999999999887777777888999999999
Q ss_pred cCcchhhhH-HHHHHHhhcCceEEEeCCC-C-C---hhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEE
Q 004815 405 TNLGWMMGP-WLVYASLLNGASIALYNGS-P-L---GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 478 (729)
Q Consensus 405 ~~~~~~~~~-~~i~~~L~~G~~lvl~~~~-~-~---~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~ 478 (729)
.|++|..+. ..++.+|..|+++++.+.. . + ...++++|+++++|++.++|+++..|++... ...++++||.++
T Consensus 261 ~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~ 339 (632)
T PRK07529 261 LPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYAL 339 (632)
T ss_pred cCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEE
Confidence 999998887 4688999999999997532 1 2 2578899999999999999999999987653 234689999999
Q ss_pred eecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEE--cCCC---CccCCCCCc
Q 004815 479 STGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFIL--GNDG---CPIPQNVPG 553 (729)
Q Consensus 479 ~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~--d~~g---~~~p~g~~g 553 (729)
+||+++++++.+++.+.+ +++++|.||+||++..+...........+++|+|+++++++|+ |++| +++|.|+.
T Consensus 340 ~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~- 417 (632)
T PRK07529 340 CGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEV- 417 (632)
T ss_pred EcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCc-
Confidence 999999999999988766 4899999999999876554443334456899999999999884 7777 88999987
Q ss_pred eeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHh
Q 004815 554 MGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN 633 (729)
Q Consensus 554 iGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~ 633 (729)
|||+|++..+..+| + +++.+...|. +.+||+|||+|++++||++++.||.||+||++|++|+|.|||++|.
T Consensus 418 -Gel~v~gp~v~~GY-~-~~~~~~~~~~------~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~ 488 (632)
T PRK07529 418 -GVLCIAGPNVFSGY-L-EAAHNKGLWL------EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALL 488 (632)
T ss_pred -eEEEEECCCccccc-c-CCcccccccc------CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHH
Confidence 99999665443332 3 4444444443 2349999999999999999999999999999999999999999995
Q ss_pred cCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCC-CCCccceEEeCCCCCCCCCChhh
Q 004815 634 AVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN-PLFKVSHVVPLPSLPRTATNKVM 712 (729)
Q Consensus 634 ~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~-~~~~P~~i~~v~~lP~t~~GKid 712 (729)
+||+|.+|+|++.+++..| +.++|||++.+ +. ..+.++++++ ++++|+ .+++|+.|+++++||+|++|||+
T Consensus 489 -~~p~V~~a~vvg~~d~~~g-e~~~a~v~l~~-~~-~~~~~~l~~~----~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~ 560 (632)
T PRK07529 489 -RHPAVALAAAVGRPDAHAG-ELPVAYVQLKP-GA-SATEAELLAF----ARDHIAERAAVPKHVRILDALPKTAVGKIF 560 (632)
T ss_pred -hCCCeeEEEEEeccCCCCC-ceeEEEEEEcC-CC-CCCHHHHHHH----HHHhcchhccCCcEEEEecCCCCCCCCccc
Confidence 9999999999999998877 88999999987 54 4566777665 556665 47999999999999999999999
Q ss_pred HHHHHHHHHh
Q 004815 713 RRVLRKQLAQ 722 (729)
Q Consensus 713 R~~L~~~~~~ 722 (729)
|++|++.+.+
T Consensus 561 r~~Lr~~~~~ 570 (632)
T PRK07529 561 KPALRRDAIR 570 (632)
T ss_pred HHHHHHHHHH
Confidence 9999998765
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-70 Score=622.04 Aligned_cols=498 Identities=17% Similarity=0.159 Sum_probs=391.5
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|.+.++++|+++|+++.+.+ ++||+||.++++++|++|.+. +||+|+|+++|++++++++|||+++
T Consensus 21 ~~~~~~~~~~~~p~~~a~~~~~~~-------~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~ 90 (539)
T PRK06334 21 VLESFLKLCSEMTTATVCWDEQLG-------KLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLS 90 (539)
T ss_pred HHHHHHHHHHhCCCceEEEeCCCC-------cccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhc
Confidence 446677788999999999876532 899999999999999999873 8999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhh---cCCcEEEEcCCCCCcccccCCCCcCHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA---QAPLAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
|++++|++|.++.+++.+++++++++++|+++.... ....+... .+..++.+.... ....+.
T Consensus 91 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~ 155 (539)
T PRK06334 91 GKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQ------HLAQTHGEDAEYPFSLIYMEEVR---------KELSFW 155 (539)
T ss_pred CCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHH------HHhhhhhccccccccEEEEehhh---------hhccHH
Confidence 999999999999999999999999999999875321 11111110 111222222100 001111
Q ss_pred HHHHHhh-cccc-----CccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcch
Q 004815 336 DFLERVR-KLKE-----NEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGW 409 (729)
Q Consensus 336 ~~~~~~~-~~~~-----~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 409 (729)
+...... ...+ .........++++|+|+|||||||.||||+++|+++.....+....++++++|++++.+|+.|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h 235 (539)
T PRK06334 156 EKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFH 235 (539)
T ss_pred HhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHh
Confidence 1110000 0000 001112356799999999999999999999999999988887777889999999999999999
Q ss_pred hhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhH
Q 004815 410 MMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDE 488 (729)
Q Consensus 410 ~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~ 488 (729)
.+++ ..++.++.+|+++++.....++..+++.|+++++|++.++|++++.|++.......++++||.+++||+++++++
T Consensus 236 ~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~ 315 (539)
T PRK06334 236 AYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSL 315 (539)
T ss_pred hhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHH
Confidence 9887 457899999999998766568889999999999999999999999998765445566899999999999999999
Q ss_pred HHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccccCCC
Q 004815 489 YLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGAS 567 (729)
Q Consensus 489 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~~ 567 (729)
.+++.+.++++++++.||+||++..++...........++|+|++|++++|+|+ .++++|.|+. |||+|.+..+..+
T Consensus 316 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~--Gel~v~g~~~~~G 393 (539)
T PRK06334 316 YQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGET--GLVLTRGTSLFSG 393 (539)
T ss_pred HHHHHHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCce--EEEEEecCccccc
Confidence 999988887789999999999986655443333334568999999999999996 5789999986 9999965544332
Q ss_pred cccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeee------
Q 004815 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLE------ 641 (729)
Q Consensus 568 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~------ 641 (729)
|+++++.+. |.. .++.+||+|||+|++++||+++|.||.||+||++|++|+|.|||++|. .||+|.+
T Consensus 394 -Y~~~~~~~~--~~~---~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~~~v~~~~~~~~ 466 (539)
T PRK06334 394 -YLGEDFGQG--FVE---LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILM-EGFGQNAADHAGP 466 (539)
T ss_pred -ccCCccccc--cee---eCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHH-HccCCccccccCc
Confidence 345555432 322 124569999999999999999999999999999999999999999995 9999998
Q ss_pred eEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhh-CCCCCccceEEeCCCCCCCCCChhhHHHHHHHH
Q 004815 642 TAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK-LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 720 (729)
Q Consensus 642 a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~-L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~ 720 (729)
++|++.++. . ..+++|++.. .+.+++++ +|+++ ++.||+|+.|+++++||+|+||||||++|+++.
T Consensus 467 ~~v~~~~~~--~-~~~~~~~~~~------~~~~~~~~----~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 533 (539)
T PRK06334 467 LVVCGLPGE--K-VRLCLFTTFP------TSISEVND----ILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALA 533 (539)
T ss_pred eEEEcCCCC--c-eEEEEEEecc------CChHHHHH----HHHhcCCcccccchheeeecccccccCCcccHHHHHHHH
Confidence 777777642 1 4566666532 23455555 45554 789999999999999999999999999999997
Q ss_pred Hhh
Q 004815 721 AQL 723 (729)
Q Consensus 721 ~~~ 723 (729)
.++
T Consensus 534 ~~~ 536 (539)
T PRK06334 534 KSL 536 (539)
T ss_pred HHh
Confidence 764
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-70 Score=640.63 Aligned_cols=480 Identities=19% Similarity=0.216 Sum_probs=392.6
Q ss_pred hhhhccccCC--CCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 180 KNCLSVNSKR--SLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 180 ~~~l~~~~~~--~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
.++|.+++++ +||++|+++ +. .+||+||+++++++|++|.++|+++||+|+|+++|++++++++|||++
T Consensus 7 ~~~~~~~a~~~~~pd~~a~~~-~~--------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~ 77 (705)
T PRK06060 7 AGLLAEQASEAGWYDRPAFYA-AD--------VVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLA 77 (705)
T ss_pred HHHHHHHHhhccCCCceEEEe-cC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 3556666654 799999986 33 799999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
+|++++|+||.++.+++.+++++++++++|+++....... .. ......++
T Consensus 78 aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-------------~~-----------------~~~~~~~~ 127 (705)
T PRK06060 78 RGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQ-------------PS-----------------RVAEAAEL 127 (705)
T ss_pred hCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhc-------------cc-----------------ccchhhhh
Confidence 9999999999999999999999999999999874321100 00 00001111
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHH-hhCCCCCCCEEEEccCcchhhhH-HH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW-CHMDIRKADIVAWPTNLGWMMGP-WL 415 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~-~~ 415 (729)
........+ .......++++|||+|||||||+||||+++|+++.+.+.+.. ..++++++|++++.+++.|++++ ..
T Consensus 128 ~~~~~~~~~--~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 205 (705)
T PRK06060 128 MSEAARVAP--GGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNS 205 (705)
T ss_pred hhhccccCC--CCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHH
Confidence 111100000 111234578999999999999999999999999988776653 45788999999999999999887 57
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
++.+|..|+++++.+...++..+..+++++++|+++++|+++..+++... ..++++||.+++|||++++++.+++.+.
T Consensus 206 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~ 283 (705)
T PRK06060 206 VWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEF 283 (705)
T ss_pred HHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHH
Confidence 88999999999998766677888999999999999999999999987542 3357899999999999999999999888
Q ss_pred cCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 575 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~ 575 (729)
+++++++|.||+||++..+..... .....+++|+|++|++++|+|++|+++|.|+. |||+|++..+..+ |+++++.
T Consensus 284 ~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~--GEl~i~g~~v~~G-Y~~~~~~ 359 (705)
T PRK06060 284 FGGIPILDGIGSTEVGQTFVSNRV-DEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVE--GDLWVRGPAIAKG-YWNRPDS 359 (705)
T ss_pred cCCCceEeeeeccccCceEEeccC-CCCCcCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEccchhhhh-hhCCCcc
Confidence 877899999999999865433222 22345789999999999999999999999997 9999966544432 3445543
Q ss_pred cccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004815 576 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 655 (729)
Q Consensus 576 ~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 655 (729)
+ + .+.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+|+|+++++...+ +
T Consensus 360 ~---~------~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~a~vv~~~~~~~~-~ 428 (705)
T PRK06060 360 P---V------ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLII-EDEAVAEAAVVAVRESTGA-S 428 (705)
T ss_pred c---c------cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeecCccCC-e
Confidence 2 1 13359999999999999999999999999999999999999999995 8999999999999987766 7
Q ss_pred eEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHH
Q 004815 656 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 720 (729)
Q Consensus 656 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~ 720 (729)
.+++|++... +. ..+.+ ..+.++++++++||.||+|..|+++++||+|+|||+||++|++++
T Consensus 429 ~~~a~vv~~~-~~-~~~~~-~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 429 TLQAFLVATS-GA-TIDGS-VMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred eEEEEEEecc-cc-CcChH-HHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 8999999876 32 23332 334566688999999999999999999999999999999999865
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-69 Score=617.35 Aligned_cols=503 Identities=18% Similarity=0.146 Sum_probs=395.7
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
.++|+++++++|+++|+++.++ ++||+||+++++++|++|.++|+++||+|+|+++|++++++++|||+++|
T Consensus 10 ~~~~~~~~~~~p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~G 81 (563)
T PLN02860 10 CQCLTRLATLRGNAVVTISGNR--------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAG 81 (563)
T ss_pred HHHHHHHHHhcCCceEEecCCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhcc
Confidence 4567888899999999998665 89999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHH-hhcCCc--EEEEcCCCCCcccccCCCCcCHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVI-DAQAPL--AIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
++++||+|.++.+++.+++++++++++++++.... ....+. ..++.. .+++........ ........+++
T Consensus 82 av~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~ 154 (563)
T PLN02860 82 GIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSS------WYEELQNDRLPSLMWQVFLESPSSSVF-IFLNSFLTTEM 154 (563)
T ss_pred EEEEeCCcccCHHHHHHHHHhcCceEEEEecccch------HHHHHhhccCCceeEEEEecCcccccc-cchhhccccch
Confidence 99999999999999999999999999999875311 111111 111111 111111110000 00000011111
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 416 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i 416 (729)
+..... ..........++++++++|||||||.||||+++|++++.........++++++|+++..+|+.|+.++..+
T Consensus 155 ~~~~~~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 231 (563)
T PLN02860 155 LKQRAL---GTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 231 (563)
T ss_pred hccCcc---ccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHH
Confidence 111000 00011123467899999999999999999999999998877666677899999999999999999999888
Q ss_pred HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC--CCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
+.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|++.... ....+++||.+++||+++++++.+++.+
T Consensus 232 ~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~ 310 (563)
T PLN02860 232 LAMLMVGACHVLLPK-FDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKK 310 (563)
T ss_pred HHHHHcCceEEecCC-CCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHH
Confidence 899999999999764 6788999999999999999999999999875422 2345789999999999999999999988
Q ss_pred ccCCCCeeecccccccccccccCCccc----------------------ccccccccCCCCCcEEEEEcCCCCccCCCCC
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLLQ----------------------AQSLAAFSTPAMGCKLFILGNDGCPIPQNVP 552 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~~----------------------~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~ 552 (729)
.+++.+++|.||+||++..++...... .....++|+|++|++++|+|++ .|+.
T Consensus 311 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~-----~g~~ 385 (563)
T PLN02860 311 LFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE-----SSRV 385 (563)
T ss_pred hcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC-----CCce
Confidence 887789999999999876443322111 0112378999999999999976 4664
Q ss_pred ceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHH
Q 004815 553 GMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632 (729)
Q Consensus 553 giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L 632 (729)
|||+|++..+..+ |+++++.++..|..+ +||+|||+|++++||+++|+||+||+||++|++|+|.|||++|
T Consensus 386 --Gel~v~g~~~~~G-Y~~~~~~t~~~~~~~------g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l 456 (563)
T PLN02860 386 --GRILTRGPHVMLG-YWGQNSETASVLSND------GWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVL 456 (563)
T ss_pred --eEEEEecCccccc-ccCCccccchhccCC------CeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHH
Confidence 9999965544332 456777777766432 3999999999999999999999999999999999999999999
Q ss_pred hcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCC-------------CCChHHHHHHHHHHHHh-hCCCCCccceEE
Q 004815 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYT-------------PPDLNQLRMSFNSAVQK-KLNPLFKVSHVV 698 (729)
Q Consensus 633 ~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~-------------~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~ 698 (729)
. .||+|.+|+|++++++..+ +.++|+|++++ +.. ..+.+ .+++++++ +|++|++|..|+
T Consensus 457 ~-~~p~V~~~~v~~~~~~~~~-~~~~a~v~~~~-~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~L~~~~~P~~~~ 529 (563)
T PLN02860 457 S-QHPGVASVVVVGVPDSRLT-EMVVACVRLRD-GWIWSDNEKENAKKNLTLSSE----TLRHHCREKNLSRFKIPKLFV 529 (563)
T ss_pred H-hCCCcceeEEEEEecCcCC-ceEEEEEEECC-ccccccccchhhcccccccHH----HHHHHHhhCcccccccceEEE
Confidence 5 9999999999999988777 89999999876 420 12223 44556766 599999999887
Q ss_pred eC-CCCCCCCCChhhHHHHHHHHHh
Q 004815 699 PL-PSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 699 ~v-~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++ ++||+|++|||+|++|++++.+
T Consensus 530 ~~~~~lP~t~~GKi~r~~L~~~~~~ 554 (563)
T PLN02860 530 QWRKPFPLTTTGKIRRDEVRREVLS 554 (563)
T ss_pred EEecCCCCCcccchhHHHHHHHHHH
Confidence 64 7899999999999999999876
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-70 Score=540.09 Aligned_cols=504 Identities=19% Similarity=0.208 Sum_probs=425.9
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
.++|.++++++||++||+++++ +|||+||+++++++|..|+++|+++||+|.+.++|..++++.++|.+|+|
T Consensus 31 ~d~L~~~A~~~pdriAv~d~~~--------~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlG 102 (542)
T COG1021 31 TDILTDHAARYPDRIAVIDGER--------RLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLG 102 (542)
T ss_pred HHHHHHHHhhcCCceEEecCcc--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcC
Confidence 3568889999999999999988 89999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCC-CCCcccccCCCCcCHHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAK-GSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~ 338 (729)
+++|.--|+....+|.+..+.+.++.+|.+... .....-+...++....+....++... .... ...+..+.
T Consensus 103 v~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~-~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~-------~~~~~~~~ 174 (542)
T COG1021 103 VAPVLALPSHRASELGAFASQIEAALLIVARQH-SGFDYRPFARELVAKHPTLRHVIVAGEAEHP-------SVLEAALC 174 (542)
T ss_pred cchhhccchhhHHHHHHHHHhhcchheeechhh-cccCcHHHHHHHHhhCCcceEEEEccCCCCc-------chhhhhhh
Confidence 999999999999999999999999999998743 23333344445555555533333321 1110 11111111
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH--HHH
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP--WLV 416 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~i 416 (729)
... ....+..+.+++++||...+.||||.||-+..+|.....++....+.++++..+++++..|..|.+.+ -.+
T Consensus 175 ~~a----~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~ 250 (542)
T COG1021 175 HPA----GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGA 250 (542)
T ss_pred Ccc----ccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcch
Confidence 111 11223455678899999999999999999999999998888888899999999999999999988776 478
Q ss_pred HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
++.+++|+++|+.+. +++.....+|++|+||+..++|.+...|++..+....+++|||.+-+||..+++++.+++...+
T Consensus 251 LGv~~agG~VVla~~-psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l 329 (542)
T COG1021 251 LGVFLAGGTVVLAPD-PSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL 329 (542)
T ss_pred hheeeeccEEEECCC-CCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhh
Confidence 899999999999764 6778899999999999999999999999999888899999999999999999999999988766
Q ss_pred CCCCeeecccccccccccccCCcccccccccccCCC-CCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 575 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~ 575 (729)
+ +.+-+.+||.|--++++--......-..+-|+|+ |.-+++|+|++|+++++|++ |+|...++|-=.+ ||..++.
T Consensus 330 g-C~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~--G~LltRGPYTirG-Yyrap~H 405 (542)
T COG1021 330 G-CQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEV--GELLTRGPYTIRG-YYRAPEH 405 (542)
T ss_pred C-chHHHHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCc--ceeeecCCeeeee-eccCchh
Confidence 5 8999999999976655443333333345779997 67899999999999999997 9999966654322 3567777
Q ss_pred cccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004815 576 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 655 (729)
Q Consensus 576 ~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 655 (729)
.+..|..+. +|+|||++++++||+|.+.||.+|||+.+|++|-.+|||+.|+ .||.|.+|++|+.+|+--| +
T Consensus 406 Na~aF~a~G------FYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL-~HP~V~~AAlVampDelLG-E 477 (542)
T COG1021 406 NARAFDADG------FYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLL-RHPAVHDAALVAMPDELLG-E 477 (542)
T ss_pred hhhccCcCC------ceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHh-hCchhhhhhhhcCchhhcC-c
Confidence 888888654 8999999999999999999999999999999999999999997 9999999999999999999 9
Q ss_pred eEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 656 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 656 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+.|||++.++ . +....+|+++|++ ..|..|++|++|.++++||+|+-||||||+|++.+..
T Consensus 478 ksCAfiv~~~-~--~~~~~qlr~~L~~---~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~ 538 (542)
T COG1021 478 KSCAFIVVKE-P--PLRAAQLRRFLRE---RGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLAS 538 (542)
T ss_pred ceeEEEEecC-C--CCCHHHHHHHHHH---cchhhhcCCcceeecccCCCcccccccHHHHHHHhhh
Confidence 9999999998 2 3678899998754 6799999999999999999999999999999998765
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=606.20 Aligned_cols=488 Identities=19% Similarity=0.180 Sum_probs=398.2
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|.++++++||++|+++.++ ++||+||+++++++|++|.++|+++||+|+++++|+++++++++||+++
T Consensus 45 ~~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~ 116 (537)
T PRK13382 45 PTSGFAIAAQRCPDRPGLIDELG--------TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRI 116 (537)
T ss_pred HHHHHHHHHHhCCCCeEEEeCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHc
Confidence 45668888899999999998665 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|++++|++|.++.+++.+++++++++++|+++... ..........+. ..+.+... .....+++
T Consensus 117 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 181 (537)
T PRK13382 117 GADILLLNTSFAGPALAEVVTREGVDTVIYDEEFS------ATVDRALADCPQATRIVAWTDE---------DHDLTVEV 181 (537)
T ss_pred CcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhH------HHHHHHHhhccccceEEEecCC---------cccccHHH
Confidence 99999999999999999999999999999987532 111111111111 11111110 11234444
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 416 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i 416 (729)
+...... . .....+++.++++|||||||.||||+++|++++.........+.+..+++++...|++|+.++..+
T Consensus 182 ~~~~~~~----~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 255 (537)
T PRK13382 182 LIAAHAG----Q--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQL 255 (537)
T ss_pred HhhccCc----C--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHH
Confidence 4332111 1 112346889999999999999999999999988887777777888999999999999999998888
Q ss_pred HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC--CCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
+.++..|+++++.. ..++..+++.|+++++|++..+|++++.|++.... ...+++++|.+++||+++++++++++.+
T Consensus 256 ~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 334 (537)
T PRK13382 256 VLAASLACTIVTRR-RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMD 334 (537)
T ss_pred HHHHhcCcEEEECC-CcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHH
Confidence 89999999998864 46788999999999999999999999999875421 2345678999999999999999999888
Q ss_pred ccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccc
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~ 574 (729)
.++ .+++|.||+||++..++...........++|+|++|++++|+|++++++|.|+. |||++.+..+..+| . ++
T Consensus 335 ~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~gY--~-~~ 408 (537)
T PRK13382 335 QFG-DVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEV--GTIFVRNDTQFDGY--T-SG 408 (537)
T ss_pred HcC-CcEEecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCe--eEEEEEcCCcccCc--c-cc
Confidence 776 679999999999875543332223345789999999999999999999999986 99999665443333 2 44
Q ss_pred ccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 575 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
.++..+ +| ||+|||++++++||+++|+||+||+||++|++|+|.|||++|. .||+|.+|+|++++++..|
T Consensus 409 ~~~~~~------~g--~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~~~v~~~~~~~~g- 478 (537)
T PRK13382 409 STKDFH------DG--FMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLA-THPDVAEAAVIGVDDEQYG- 478 (537)
T ss_pred chhhcc------CC--CEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHH-hCCCEeeEEEEccCccccC-
Confidence 443321 23 9999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred eeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHH
Q 004815 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~ 718 (729)
+.++++|++.+ +. ..+.++++ ++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 479 ~~~~a~vv~~~-~~-~~~~~~l~----~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 479 QRLAAFVVLKP-GA-SATPETLK----QHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred CEEEEEEEECC-CC-CCCHHHHH----HHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 88999999876 43 34444444 4688899999999999999999999999999999864
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-68 Score=604.72 Aligned_cols=510 Identities=20% Similarity=0.225 Sum_probs=410.2
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|+++++.+||++|+++.+.+ .+.++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 26 l~~~l~~~a~~~p~~~A~~~~~~~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~ 103 (547)
T PRK13295 26 INDDLDACVASCPDKTAVTAVRLG--TGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRI 103 (547)
T ss_pred HHHHHHHHHHHCCCceEEEecCCC--ccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence 446677888899999999986521 223459999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|++++|++|.++.+++.+++++++++++++++.... .+.......+....+. .++++... +..++.+
T Consensus 104 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 172 (547)
T PRK13295 104 GAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRG-FDHAAMARRLRPELPALRHVVVVGGD----------GADSFEA 172 (547)
T ss_pred CcEEeccccccCHHHHHHHHHhcCceEEEEeccccC-cchHHHHHHHhhhCCCcceEEEecCC----------CccCHHH
Confidence 999999999999999999999999999999875311 0000111112122221 22222211 1223444
Q ss_pred HHHHhhc----cccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhh
Q 004815 337 FLERVRK----LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMG 412 (729)
Q Consensus 337 ~~~~~~~----~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 412 (729)
+...... ............++++|+++|||||||.||||+++|++++..+......+++.++|++++.+|++|..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g 252 (547)
T PRK13295 173 LLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTG 252 (547)
T ss_pred HhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhh
Confidence 4322100 000111122346789999999999999999999999999988888878889999999999999999988
Q ss_pred H-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHH
Q 004815 413 P-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 491 (729)
Q Consensus 413 ~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~ 491 (729)
. +.++.+|..|+++++.+. .++..+++.++++++|++.++|+++..|.........++++||.+++||+++++++.++
T Consensus 253 ~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~ 331 (547)
T PRK13295 253 FMYGLMMPVMLGATAVLQDI-WDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVER 331 (547)
T ss_pred HHHHHHHHHHcCCeEEeCCC-CCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHH
Confidence 6 678899999999998763 57889999999999999999999999998766555567889999999999999999999
Q ss_pred HHhccCCCCeeecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccc
Q 004815 492 LMGRALYKPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 570 (729)
Q Consensus 492 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~ 570 (729)
+.+.+ +++++|.||+||++..++..... ......++|+|++|++++|+|++++++|.|+. |||+|++..+..+ |+
T Consensus 332 ~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g~~~~~g-Y~ 407 (547)
T PRK13295 332 ARAAL-GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQI--GRLQVRGCSNFGG-YL 407 (547)
T ss_pred HHHHh-CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCCC--CeEEEEcCccccc-cc
Confidence 88777 58999999999998654333221 12234688999999999999999999999987 9999966554332 45
Q ss_pred ccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCC
Q 004815 571 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650 (729)
Q Consensus 571 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 650 (729)
++++.++.. .+| ||+|||+|++++||++++.||.||+||++|++|+|.|||++|. .||+|.+|+|+++++.
T Consensus 408 ~~~~~t~~~------~~g--~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~-~~~~v~~~~v~~~~~~ 478 (547)
T PRK13295 408 KRPQLNGTD------ADG--WFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLY-RHPAIAQVAIVAYPDE 478 (547)
T ss_pred CCccccccC------CCC--CeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeecC
Confidence 566666543 124 9999999999999999999999999999999999999999995 9999999999999988
Q ss_pred CCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 651 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 651 ~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
..| +.+++++++.+ +. ..+.+++++ ++++ .|++||+|..|+++++||+|++||++|++|++++.+
T Consensus 479 ~~g-~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 479 RLG-ERACAFVVPRP-GQ-SLDFEEMVE----FLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRG 544 (547)
T ss_pred CCC-cEEEEEEEeCC-CC-CCCHHHHHH----HHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhc
Confidence 777 78999999876 43 345555555 4554 799999999999999999999999999999998865
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-68 Score=605.47 Aligned_cols=509 Identities=19% Similarity=0.211 Sum_probs=413.5
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
..+.|.++++++|+++|+++.+. ++||+||.++++++|..|.+. |+++||+|+|+++|++++++++|||++
T Consensus 12 l~~~l~~~a~~~~~~~a~~~~~~--------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 83 (546)
T PRK08314 12 LFHNLEVSARRYPDKTAIVFYGR--------AISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILR 83 (546)
T ss_pred HHHHHHHHHHHcCCCcceeecCc--------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 45667778889999999999877 999999999999999999999 999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCC----cc---------
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSS----FS--------- 324 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~--------- 324 (729)
+|++++|++|.++.+++.+++++++++++++++.... .............+++...... ..
T Consensus 84 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (546)
T PRK08314 84 ANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAP------KVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRA 157 (546)
T ss_pred cCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhh------hHHHHhhccCcceEEEecchhhcccccccCccccccc
Confidence 9999999999999999999999999999999875321 1111111111111111110000 00
Q ss_pred -----cccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCC
Q 004815 325 -----MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKAD 399 (729)
Q Consensus 325 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d 399 (729)
.....+...|++...... ........++++|+|+|||||||.||||+++|+++++.+......+++.++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d 232 (546)
T PRK08314 158 EPPLQALAPGGVVAWKEALAAGL-----APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPES 232 (546)
T ss_pred ccccccccccccccHHHHhcccC-----CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCc
Confidence 000112334555543211 1123345688999999999999999999999999999888887888999999
Q ss_pred EEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEE
Q 004815 400 IVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 478 (729)
Q Consensus 400 ~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~ 478 (729)
++++..|++|..++ +.++.+|.+|+++++.+. .++..++++++++++|++.++|+++..++........+++++|.++
T Consensus 233 ~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~ 311 (546)
T PRK08314 233 VVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR-WDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIG 311 (546)
T ss_pred eEEEEcCchHHHHHHHHHHHHHHcCCeEEecCC-CCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheee
Confidence 99999999999987 668899999999999875 5778899999999999999999999998876555556788999999
Q ss_pred eecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEE
Q 004815 479 STGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGEL 557 (729)
Q Consensus 479 ~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel 557 (729)
+||+++++++++++.+.++ .++++.||+||++......... .....++|+|++|++++|+|+ ++++++.|.. |||
T Consensus 312 ~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~--Gel 387 (546)
T PRK08314 312 GGGAAMPEAVAERLKELTG-LDYVEGYGLTETMAQTHSNPPD-RPKLQCLGIPTFGVDARVIDPETLEELPPGEV--GEI 387 (546)
T ss_pred eccccCCHHHHHHHHHHcC-CcEEecccccccccceecCCCc-CCCCCccCcccCCeEEEEEeCCCCcCCCCCCc--eEE
Confidence 9999999999999887764 7899999999998654433222 234568999999999999995 6899999986 999
Q ss_pred EeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCC
Q 004815 558 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 637 (729)
Q Consensus 558 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p 637 (729)
+|.+..+..+ |+++++.++..|..+ +|.+||+|||+|++++||+++++||+||+||++|.+|+|.|||++|. .+|
T Consensus 388 ~v~g~~~~~g-Y~~~~~~t~~~f~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~-~~~ 462 (546)
T PRK08314 388 VVHGPQVFKG-YWNRPEATAEAFIEI---DGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLY-KHP 462 (546)
T ss_pred EEECCchhcc-ccCChhHhhhhhhhc---CCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHH-hCc
Confidence 9965544333 356777777777643 35569999999999999999999999999999999999999999995 999
Q ss_pred CeeeeEEEeecCCCCCceeEEEEEEecCCCCC-CCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHH
Q 004815 638 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYT-PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 716 (729)
Q Consensus 638 ~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~-~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L 716 (729)
+|.+++|++.++...+ +.+++|+++++ +.. ..+.++ ++++++++|++|++|..++++++||+|+|||++|++|
T Consensus 463 ~v~~~~v~~~~~~~~~-~~~~a~v~~~~-~~~~~~~~~~----l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L 536 (546)
T PRK08314 463 AIQEACVIATPDPRRG-ETVKAVVVLRP-EARGKTTEEE----IIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQL 536 (546)
T ss_pred chheEEEEeCCCcccC-ceeEEEEEECC-CCCCCCCHHH----HHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHH
Confidence 9999999999987776 88999999887 321 123344 4446888999999999999999999999999999999
Q ss_pred HHHHHh
Q 004815 717 RKQLAQ 722 (729)
Q Consensus 717 ~~~~~~ 722 (729)
++....
T Consensus 537 ~~~~~~ 542 (546)
T PRK08314 537 QEQEKA 542 (546)
T ss_pred HHHHhh
Confidence 887654
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-68 Score=603.57 Aligned_cols=504 Identities=19% Similarity=0.199 Sum_probs=402.3
Q ss_pred hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAI 255 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vv~~LA~ 255 (729)
+..+.++++ +++|+++|+++...+ .++||+||+++++++|++|++ .|+++||+|+|+++|++++++++|||
T Consensus 41 ~~~~~l~~~--~~~~~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~ 112 (560)
T PLN02574 41 DAVSFIFSH--HNHNGDTALIDSSTG------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAV 112 (560)
T ss_pred CHHHHHhcC--cccCCCCEEEECCCC------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHH
Confidence 445566665 578999999975442 279999999999999999999 99999999999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHH
Q 004815 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 256 l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
+++|++++|++|.++.+++.+++++++++++++++... ..+. .....++.+..... .. ........|.
T Consensus 113 ~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 180 (560)
T PLN02574 113 LSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENV---------EKLS-PLGVPVIGVPENYD-FD-SKRIEFPKFY 180 (560)
T ss_pred HHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHH---------HHHH-hcCCcEEecCcccc-cc-cCccCcccHH
Confidence 99999999999999999999999999999999987421 1111 11122222211100 00 0001123455
Q ss_pred HHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHh----hCCC-CCCCEEEEccCcchh
Q 004815 336 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDI-RKADIVAWPTNLGWM 410 (729)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~-~~~d~~l~~~~~~~~ 410 (729)
++...... ..+.....++++++|+|||||||.||||+++|+++...+..... .+.. ..+++++..+|++|.
T Consensus 181 ~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~ 256 (560)
T PLN02574 181 ELIKEDFD----FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHI 256 (560)
T ss_pred HHhhcCCc----ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHH
Confidence 54433211 11223346789999999999999999999999999887665432 2222 356788999999999
Q ss_pred hhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC-CCCCCCCccEEEeecCCCCHhH
Q 004815 411 MGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI-DGYDWSSIRCFGSTGEASNVDE 488 (729)
Q Consensus 411 ~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~-~~~~l~sLr~v~~gGe~l~~~~ 488 (729)
+++ ..++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.... ...++++||.+++||++++++.
T Consensus 257 ~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~ 335 (560)
T PLN02574 257 YGLSLFVVGLLSLGSTIVVMRR-FDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKF 335 (560)
T ss_pred HHHHHHHHHHHhcCCEEEEecC-CCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHH
Confidence 887 456788889999998864 6788999999999999999999999999876532 3456889999999999999999
Q ss_pred HHHHHhccCCCCeeecccccccccccccCCc-ccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCC
Q 004815 489 YLWLMGRALYKPVIEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGA 566 (729)
Q Consensus 489 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~ 566 (729)
.+++.+.++++++++.||+||++..++.... .......++|+|++|++++|+| ++|+++|.|+. |||+|.+..+..
T Consensus 336 ~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~--Gei~v~g~~~~~ 413 (560)
T PLN02574 336 IQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC--GELWIQGPGVMK 413 (560)
T ss_pred HHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCC--eEEEEECcchhh
Confidence 9998888877899999999999865433222 1223457899999999999999 68999999997 999996554433
Q ss_pred CcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEe
Q 004815 567 SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIG 646 (729)
Q Consensus 567 ~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~ 646 (729)
+ |+++++.++..|..+ +||+|||+|++++||+++++||.||+||++|++|++.|||++|. .||+|.+++|++
T Consensus 414 G-Y~~~~~~t~~~~~~~------g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~V~~~~v~~ 485 (560)
T PLN02574 414 G-YLNNPKATQSTIDKD------GWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLI-SHPEIIDAAVTA 485 (560)
T ss_pred h-hcCChhHhhhhccCC------CCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHH-hCCCcceEEEEc
Confidence 2 456777777777532 39999999999999999999999999999999999999999995 999999999999
Q ss_pred ecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 647 VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 647 ~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++++..| +.++++|+.++ +. ..+.+++++ +++++|++|+.|..++++++||+|++||++|++|++.+.+
T Consensus 486 ~~~~~~g-~~~~a~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~ 554 (560)
T PLN02574 486 VPDKECG-EIPVAFVVRRQ-GS-TLSQEAVIN----YVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTN 554 (560)
T ss_pred cccCCCC-cceEEEEEeCC-CC-CCCHHHHHH----HHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhh
Confidence 9988777 78999998876 44 345555554 6788899999999999999999999999999999999865
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=598.82 Aligned_cols=501 Identities=19% Similarity=0.211 Sum_probs=405.6
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+++.++++++|+++|+++.+.+ +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 25 ~~~~l~~~~~~~~~~~a~~~~~~~------~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~ 98 (537)
T PLN02246 25 LHDYCFERLSEFSDRPCLIDGATG------RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRR 98 (537)
T ss_pred HHHHHHHHHHhCCCCeEEEecCCC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 345566677789999999975321 28999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
|++++|++|.++.+++..++++++++++|+++... +....+.......++.+.... .....+.++.
T Consensus 99 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~ 164 (537)
T PLN02246 99 GAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYV------DKLKGLAEDDGVTVVTIDDPP--------EGCLHFSELT 164 (537)
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchH------HHHHHHhhcCCceEEEeCCCC--------CCceeHHHHh
Confidence 99999999999999999999999999999987532 111122111111222222110 1223344443
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHh----hCCCCCCCEEEEccCcchhhhH-
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGP- 413 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~- 413 (729)
... ....+.....+++++|++|||||||.||||+++|+++++.+.+... .+++.++|+++..+|+.|++++
T Consensus 165 ~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~ 240 (537)
T PLN02246 165 QAD----ENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLN 240 (537)
T ss_pred cCC----CCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHH
Confidence 221 1122233456899999999999999999999999999887665433 4678999999999999999987
Q ss_pred HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHH
Q 004815 414 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 493 (729)
Q Consensus 414 ~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~ 493 (729)
..++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++.
T Consensus 241 ~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~ 319 (537)
T PLN02246 241 SVLLCGLRVGAAILIMPK-FEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFR 319 (537)
T ss_pred HHHHHHHhcCCEEEEeCC-CCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHH
Confidence 457789999999999875 5778899999999999999999999999876655555688999999999999999999999
Q ss_pred hccCCCCeeecccccccccccccCCc----ccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccccCCCc
Q 004815 494 GRALYKPVIEYCGGTEIGGGFITGSL----LQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 494 ~~~~~~~l~~~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~~~ 568 (729)
+.+++..+++.||+||++.+++.... ......+++|+|+++++++|+|+ +++++|.|+. |||++.+..+..+
T Consensus 320 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~G- 396 (537)
T PLN02246 320 AKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQP--GEICIRGPQIMKG- 396 (537)
T ss_pred HHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCc--eEEEEECCchhcc-
Confidence 88888889999999999865433211 11223468999999999999994 6899999997 9999965544332
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeec
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 648 (729)
|+++++.++.+|.. ++||+|||+|++++||+++++||+||+||++|.+|+|.|||++|. .||+|.+|+|++.+
T Consensus 397 Y~~~~~~~~~~~~~------~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~~~~ 469 (537)
T PLN02246 397 YLNDPEATANTIDK------DGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-SHPSIADAAVVPMK 469 (537)
T ss_pred ccCCchhhhhcccC------CCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHH-hCCCeeEEEEEccc
Confidence 35677777666642 239999999999999999999999999999999999999999995 99999999999988
Q ss_pred CCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHH
Q 004815 649 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721 (729)
Q Consensus 649 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~ 721 (729)
+...+ +.++++++..+ +. ..+.+++++ +|+++|++|++|..|+++++||+|++||++|++|++++.
T Consensus 470 ~~~~~-~~~~~~v~~~~-~~-~~~~~~l~~----~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~ 535 (537)
T PLN02246 470 DEVAG-EVPVAFVVRSN-GS-EITEDEIKQ----FVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLA 535 (537)
T ss_pred CccCC-ceeEEEEEeCC-CC-CCCHHHHHH----HHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHh
Confidence 88777 78999998876 43 344455444 678899999999999999999999999999999999875
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-67 Score=599.78 Aligned_cols=508 Identities=19% Similarity=0.197 Sum_probs=403.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
..+.|+++++++|+++|+++.++ .+||+||+++++++|++|.+ .|+++||+|+|+++|++++++++|||++
T Consensus 26 ~~~~l~~~a~~~p~~~al~~~~~--------~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~ 97 (562)
T PRK05677 26 IQAVLKQSCQRFADKPAFSNLGK--------TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMR 97 (562)
T ss_pred HHHHHHHHHHhCCCCeeEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 44667778888999999998766 89999999999999999997 5999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcc-------------
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFS------------- 324 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------- 324 (729)
+|++++|++|.++.+++.+++++++++++|+++.... ...++........+++........
T Consensus 98 ~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK05677 98 AGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAH------LAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKH 171 (562)
T ss_pred cCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhh------hHHHhhhccCcceeEEecccccccchhhhhcccchhh
Confidence 9999999999999999999999999999999764321 111221111111122211000000
Q ss_pred ------cccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCC--CC
Q 004815 325 ------MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD--IR 396 (729)
Q Consensus 325 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~ 396 (729)
....++...+.+.+..... .........++++++|+|||||||.||||+++|+++..........++ +.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~ 248 (562)
T PRK05677 172 VKKMVPAYHLPQAVKFNDALAKGAG---QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLN 248 (562)
T ss_pred ccccccccCCcccccHHHHHhcCCC---CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCC
Confidence 0000112233443322211 111223456799999999999999999999999999877665544433 34
Q ss_pred C-CCEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCc
Q 004815 397 K-ADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 474 (729)
Q Consensus 397 ~-~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sL 474 (729)
. .++++..+|+.|..+. +.++.++..|++.++.+...++..+++.|+++++|.+..+|+++..+.........+++++
T Consensus 249 ~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l 328 (562)
T PRK05677 249 EGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSAL 328 (562)
T ss_pred CCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhc
Confidence 3 4678899999999887 5677888899988887766678889999999999999999999999987654444557899
Q ss_pred cEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCce
Q 004815 475 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGM 554 (729)
Q Consensus 475 r~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~gi 554 (729)
|.+++||+++++++.+++.+.+ ++++++.||+||++.++..... .....+++|+|+++++++|+|++++++|.|+.
T Consensus 329 r~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~-- 404 (562)
T PRK05677 329 KLTLSGGMALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPS-QAIQVGTIGIPVPSTLCKVIDDDGNELPLGEV-- 404 (562)
T ss_pred eEEEEcCccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCc-cCCCCCccCccCCCCEEEEECCCCCCCCCCCC--
Confidence 9999999999999998888765 4899999999998865443322 23345689999999999999999999999987
Q ss_pred eEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhc
Q 004815 555 GELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 634 (729)
Q Consensus 555 Gel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~ 634 (729)
|||++.+..+..+ |+++++.++..|..+ .||+|||+|++++||++++.||+||+||++|.+|+|.|||++|.
T Consensus 405 Gel~v~g~~~~~g-Y~~~~~~t~~~~~~~------g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~- 476 (562)
T PRK05677 405 GELCVKGPQVMKG-YWQRPEATDEILDSD------GWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLA- 476 (562)
T ss_pred eEEEEecCccchh-hcCCchhhhhccCCC------CcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHH-
Confidence 9999966544433 466788888777532 39999999999999999999999999999999999999999995
Q ss_pred CCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHH
Q 004815 635 VDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714 (729)
Q Consensus 635 ~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~ 714 (729)
.||+|.+++|++++++..+ +.++++++++. +. ..+.+++++ ++++.|++|++|..|+++++||+|+|||++|+
T Consensus 477 ~~~~v~~~~v~g~~~~~~g-~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~ 549 (562)
T PRK05677 477 ALPGVLQCAAIGVPDEKSG-EAIKVFVVVKP-GE-TLTKEQVME----HMRANLTGYKVPKAVEFRDELPTTNVGKILRR 549 (562)
T ss_pred hCCCccEEEEEeccCccCC-ceEEEEEEeCC-CC-CCCHHHHHH----HHHHhhhhccCCcEEEEeccCCCCCcccccHH
Confidence 9999999999999988777 78999998776 43 355566555 57788999999999999999999999999999
Q ss_pred HHHHHHHh
Q 004815 715 VLRKQLAQ 722 (729)
Q Consensus 715 ~L~~~~~~ 722 (729)
+|+++...
T Consensus 550 ~L~~~~~~ 557 (562)
T PRK05677 550 ELRDEELK 557 (562)
T ss_pred HHHHHHHH
Confidence 99987654
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=611.61 Aligned_cols=518 Identities=16% Similarity=0.111 Sum_probs=395.3
Q ss_pred HHhhhhccccCCCCCCeEEEEee-cCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCD-EGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~-~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
...++|+++++++||++|+.+.. ..+..+.++.+||+||+++++++|++|+++|+++||+|+|+++|+++++++++||+
T Consensus 45 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~ 124 (651)
T PLN02736 45 TLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACS 124 (651)
T ss_pred CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 45677888899999999996521 11112345679999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-c-EEEEcCCCCCc-ccc--cCCCC
Q 004815 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-L-AIVIPAKGSSF-SMK--LRDGD 331 (729)
Q Consensus 257 ~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~-~~~--~~~~~ 331 (729)
++|+++||+++.++.+++.+++++++++++|+++... +....+....+. . ++++....... ... .....
T Consensus 125 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 198 (651)
T PLN02736 125 AYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTL------NTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEI 198 (651)
T ss_pred HcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHH------HHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEE
Confidence 9999999999999999999999999999999986422 112222222222 1 22221110000 000 00112
Q ss_pred cCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhh
Q 004815 332 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMM 411 (729)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 411 (729)
..|+++...... ...+.....++++|+|+|||||||.||||++||++++..+.+....+++.++|++++++|++|.+
T Consensus 199 ~~~~~~~~~~~~---~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~ 275 (651)
T PLN02736 199 VTYSKLLAQGRS---SPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIY 275 (651)
T ss_pred EEHHHHHHhccc---CCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHH
Confidence 456666554321 11122345689999999999999999999999999999888888888999999999999999999
Q ss_pred hHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--------------------------
Q 004815 412 GPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-------------------------- 465 (729)
Q Consensus 412 ~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~-------------------------- 465 (729)
+.+.++.+|..|+++++.++ ++..+++.|+++++|+++.+|++++.+.+...
T Consensus 276 ~~~~~~~~l~~G~~i~~~~~--~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (651)
T PLN02736 276 ERVNQIVMLHYGVAVGFYQG--DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALE 353 (651)
T ss_pred HHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99888899999999999874 56789999999999999999999988754310
Q ss_pred ---CCCC------------CC-CCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCccccccccccc
Q 004815 466 ---IDGY------------DW-SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFS 529 (729)
Q Consensus 466 ---~~~~------------~l-~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG 529 (729)
.... .+ ++||.+++||+++++++.+++...++ +++++.||+||++..++.... .....+++|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG 431 (651)
T PLN02736 354 NGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLEGYGMTETSCVISGMDE-GDNLSGHVG 431 (651)
T ss_pred cCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEEEechHHhchheeccCC-CCCCCCccC
Confidence 0000 01 48999999999999999998876664 789999999999865443332 223567899
Q ss_pred CCCCCcEEEEEcC-CCCc---cCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCce
Q 004815 530 TPAMGCKLFILGN-DGCP---IPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGY 605 (729)
Q Consensus 530 ~p~~~~~~~v~d~-~g~~---~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~ 605 (729)
+|+||++++|+|. ++.. ..++.. |||+|.+..+..+ |+++++.|++.|..+ | ||+|||+|++++||+
T Consensus 432 ~p~pg~~v~i~d~~~~~~~~~~~~~~~--GEl~vrgp~v~~G-Y~~~~~~t~~~~~~d----g--w~~TGDlg~~d~dG~ 502 (651)
T PLN02736 432 SPNPACEVKLVDVPEMNYTSEDQPYPR--GEICVRGPIIFKG-YYKDEVQTREVIDED----G--WLHTGDIGLWLPGGR 502 (651)
T ss_pred CccCceEEEEEEccccCcccCCCCCCC--ceEEecCCccccc-cccCHHHHHhhhccC----C--CeeccceEEEcCCCc
Confidence 9999999999993 3222 222223 9999965544332 467888888888532 3 999999999999999
Q ss_pred EEEEcccCCeeec-CceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCC---------CCCCCC---
Q 004815 606 YRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS---------NYTPPD--- 672 (729)
Q Consensus 606 l~~~GR~d~~iki-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~---------~~~~~~--- 672 (729)
|+|+||.||+||+ +|++|+|.|||++|. .||.|.+|+|++. ..+ +.++|+|+++.. +....+
T Consensus 503 l~i~GR~kd~ik~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~---~~~-~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~ 577 (651)
T PLN02736 503 LKIIDRKKNIFKLAQGEYIAPEKIENVYA-KCKFVAQCFVYGD---SLN-SSLVAVVVVDPEVLKAWAASEGIKYEDLKQ 577 (651)
T ss_pred EEEEEechhheEcCCCcEechHHHHHHHh-cCCCeeEEEEEec---CCC-ceeEEEEEeCHHHHHHHHHHcCCCccCHHH
Confidence 9999999999997 699999999999995 9999999999982 234 689999998751 110011
Q ss_pred ---hHHHHHHHHHHHH-----hhCCCCCccceEEeCCCCC------CCCCChhhHHHHHHHHHh
Q 004815 673 ---LNQLRMSFNSAVQ-----KKLNPLFKVSHVVPLPSLP------RTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 673 ---~~~l~~~l~~~l~-----~~L~~~~~P~~i~~v~~lP------~t~~GKidR~~L~~~~~~ 722 (729)
..++++.+.+.+. .+|+.|.+|++|+++++.| +|++||++|++|++.+.+
T Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~ 641 (651)
T PLN02736 578 LCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAK 641 (651)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHH
Confidence 1123333333333 2599999999999999986 799999999999998875
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=601.46 Aligned_cols=507 Identities=17% Similarity=0.161 Sum_probs=397.7
Q ss_pred hhhccccCCCCCCeEEEEeecCC--CCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 181 NCLSVNSKRSLDDIVIRWCDEGD--GGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~--~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
+.|.++++++|+++|+++.+..+ .....+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 10 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~ 89 (552)
T PRK09274 10 RHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKA 89 (552)
T ss_pred HHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHc
Confidence 45677788899999999865411 0122347999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhc---CCcEEEEcCCCCCcccccCCCCcCHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ---APLAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
|++++|++|.++.+++.+++++++++++|+++... ....+.... ....+.+... .......+.
T Consensus 90 G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~ 155 (552)
T PRK09274 90 GAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAH-------LARRLFGWGKPSVRRLVTVGGR-------LLWGGTTLA 155 (552)
T ss_pred CeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHH-------HHHHHhccCccchhheeccccc-------cccCCccHH
Confidence 99999999999999999999999999999875210 000110000 0011111110 001122344
Q ss_pred HHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHH
Q 004815 336 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL 415 (729)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 415 (729)
++..... ..........+++++||+|||||||.||||+++|+++.+.+.+....+++.++|++++..|+.+..
T Consensus 156 ~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---- 228 (552)
T PRK09274 156 TLLRDGA---AAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALF---- 228 (552)
T ss_pred HhcccCc---cccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhh----
Confidence 4431111 111223345678999999999999999999999999999888888888999999999888876532
Q ss_pred HHHHhhcCceEEEeCC------CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHH
Q 004815 416 VYASLLNGASIALYNG------SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 489 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~------~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~ 489 (729)
.+..|+++++.+. ..++..+++.|+++++|+++++|++++.|.+.......++++||.+++||+++++++.
T Consensus 229 ---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~ 305 (552)
T PRK09274 229 ---GPALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVI 305 (552)
T ss_pred ---hhhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHH
Confidence 3456888888642 2467889999999999999999999999988655455678999999999999999999
Q ss_pred HHHHhccC-CCCeeecccccccccccccCCcc---------cccccccccCCCCCcEEEEEcC---------CCCccCCC
Q 004815 490 LWLMGRAL-YKPVIEYCGGTEIGGGFITGSLL---------QAQSLAAFSTPAMGCKLFILGN---------DGCPIPQN 550 (729)
Q Consensus 490 ~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~---------~~~~~~~iG~p~~~~~~~v~d~---------~g~~~p~g 550 (729)
+++.+.++ ++++++.||+||++.+++..... ......++|+|++|++++|+|+ ++++++.|
T Consensus 306 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g 385 (552)
T PRK09274 306 ERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATG 385 (552)
T ss_pred HHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCC
Confidence 99998876 47999999999998654332211 1112347999999999999994 56789999
Q ss_pred CCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHH
Q 004815 551 VPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIER 630 (729)
Q Consensus 551 ~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~ 630 (729)
+. |||+|.+..+..+ |+++++.+...|..++ .|.+||+|||+|++++||+++++||.||+||++|++|+|.|||+
T Consensus 386 ~~--Gel~v~g~~~~~G-Y~~~~~~t~~~~~~~~--~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~ 460 (552)
T PRK09274 386 EI--GEIVVAGPMVTRS-YYNRPEATRLAKIPDG--QGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCER 460 (552)
T ss_pred Ce--eEEEEecCccccc-ccCChHHhhhhhcccC--CCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHH
Confidence 86 9999966655433 4667777776665433 23469999999999999999999999999999999999999999
Q ss_pred HHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCC--CC
Q 004815 631 ICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRT--AT 708 (729)
Q Consensus 631 ~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t--~~ 708 (729)
+|. .||+|.+|+|++++++. + +.++++|++.+ +. ..+.+++++.+++.++. ++.++.|..|+++++||+| +|
T Consensus 461 ~l~-~~p~V~~~~v~~~~~~~-~-~~~~~~v~~~~-~~-~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~lP~t~~~~ 534 (552)
T PRK09274 461 IFN-THPGVKRSALVGVGVPG-A-QRPVLCVELEP-GV-ACSKSALYQELRALAAA-HPHTAGIERFLIHPSFPVDIRHN 534 (552)
T ss_pred HHH-hCcccceeEEEEeCCCC-C-ceEEEEEEccC-cc-ccchHHHhhhhHHHHHh-cCCCcceeEEeccCCCCcccccc
Confidence 995 99999999999998753 4 67889998877 54 45566788888877655 4667889999999999999 79
Q ss_pred ChhhHHHHHHHHHh
Q 004815 709 NKVMRRVLRKQLAQ 722 (729)
Q Consensus 709 GKidR~~L~~~~~~ 722 (729)
|||||++|++++.+
T Consensus 535 GKi~r~~L~~~~~~ 548 (552)
T PRK09274 535 AKIFREKLAVWAAK 548 (552)
T ss_pred ccccHHHHHHHHHH
Confidence 99999999998765
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-67 Score=589.88 Aligned_cols=482 Identities=18% Similarity=0.197 Sum_probs=395.8
Q ss_pred hhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Q 004815 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (729)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa 260 (729)
+.|.++++++||++|+++.+. ++||+||.++++++|++|.+.|. +|++|+|+++|++++++++|||+++|+
T Consensus 5 ~~~~~~a~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~ 75 (487)
T PRK07638 5 KEYKKHASLQPNKIAIKENDR--------VLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGW 75 (487)
T ss_pred HHHHHHHHhCCCCeEEecCCc--------EeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCe
Confidence 457778889999999998776 99999999999999999999985 899999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHH
Q 004815 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 340 (729)
Q Consensus 261 ~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 340 (729)
+++|++|.++.+++.+++++++++++++++...... .. ....++.+. .+.+....
T Consensus 76 ~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---------~~-~~~~~~~~~---------------~~~~~~~~ 130 (487)
T PRK07638 76 TCVPLDIKWKQDELKERLAISNADMIVTERYKLNDL---------PD-EEGRVIEID---------------EWKRMIEK 130 (487)
T ss_pred EEEecCccCCHHHHHHHHHhCCCCEEEEecccccch---------hh-ccceEEEeh---------------hhhhhhhh
Confidence 999999999999999999999999999987532111 00 001111110 11111111
Q ss_pred hhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHh
Q 004815 341 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 420 (729)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L 420 (729)
.. ..........+++++|+|||||||.||||+++|++++..+......+++.++|+++...++.|+.+++.++.++
T Consensus 131 ~~----~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l 206 (487)
T PRK07638 131 YL----PTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTL 206 (487)
T ss_pred cc----ccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHH
Confidence 10 11111223457789999999999999999999999998888887888999999999999999999888889999
Q ss_pred hcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCC
Q 004815 421 LNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKP 500 (729)
Q Consensus 421 ~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~ 500 (729)
..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+... . ..+.+.++++|+.++.+..+++...+++++
T Consensus 207 ~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 281 (487)
T PRK07638 207 YVGQTVHLMR-KFIPNQVLDKLETENISVMYTVPTMLESLYKENR---V-IENKMKIISSGAKWEAEAKEKIKNIFPYAK 281 (487)
T ss_pred ccCcEEEEcC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-CCceeEEEEcCCCCCHHHHHHHHHHcCCCe
Confidence 9999999875 4688899999999999999999999999987632 1 345566788999999999999998888889
Q ss_pred eeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccccccc
Q 004815 501 VIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYF 580 (729)
Q Consensus 501 l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f 580 (729)
++|.||+||++..+............++|+|++|++++|+|++|+++|.|+. |||+|.+.....+ |+++++.+...+
T Consensus 282 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--Gel~v~~~~~~~g-y~~~~~~~~~~~ 358 (487)
T PRK07638 282 LYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEI--GTVYVKSPQFFMG-YIIGGVLARELN 358 (487)
T ss_pred EEEEecCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCC--eEEEEecccceee-ecCCHHHHhhhc
Confidence 9999999999876544433333456789999999999999999999999987 9999966554433 344555444322
Q ss_pred ccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEE
Q 004815 581 SGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIV 660 (729)
Q Consensus 581 ~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~ 660 (729)
. +.||+|||+|++++||+++++||+||+||++|.+|+|.|||++|. .||+|.+|+|++.+++..| +.++++
T Consensus 359 ~-------~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~ 429 (487)
T PRK07638 359 A-------DGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLH-EHPAVDEIVVIGVPDSYWG-EKPVAI 429 (487)
T ss_pred c-------CCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEecCchhcC-CeeEEE
Confidence 1 239999999999999999999999999999999999999999995 8999999999999988777 778888
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhhcC
Q 004815 661 VVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQNS 727 (729)
Q Consensus 661 vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~~~ 727 (729)
++.. .+.+++++ .+++.|++|++|..|+++++||+|++||++|++|++++.+..+..
T Consensus 430 v~~~------~~~~~l~~----~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~~ 486 (487)
T PRK07638 430 IKGS------ATKQQLKS----FCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQEKIY 486 (487)
T ss_pred EECC------CCHHHHHH----HHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcccccc
Confidence 8632 34555555 567788999999999999999999999999999999998866543
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=589.86 Aligned_cols=501 Identities=23% Similarity=0.226 Sum_probs=412.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|.+.++.+|+++|+++.+. ++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 7 i~~~l~~~~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~ 78 (513)
T PRK07656 7 LPELLARAARRFGDKEAYVFGDQ--------RLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKA 78 (513)
T ss_pred HHHHHHHHHHHCCCCeEEEeCCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence 45667778889999999999776 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|++++|++|.++.+++..++++++++++++++... +........+.. ..+++...... ........|.+
T Consensus 79 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 149 (513)
T PRK07656 79 GAVVVPLNTRYTADEAAYILARGDAKALFVLGLFL------GVDYSATTRLPALEHVVICETEEDD---PHTEKMKTFTD 149 (513)
T ss_pred CeEEEecCcccCHHHHHHHHhhcCceEEEEchhhH------HHHHHHHhccCCccEEEEEcCcccc---cCccccccHHH
Confidence 99999999999999999999999999999987532 111122222221 12222211111 00112345666
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WL 415 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~ 415 (729)
+...... ........++++++++|||||||.||+|.++|+++.+.+.+....++++++|++++.+|+.|++++ +.
T Consensus 150 ~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (513)
T PRK07656 150 FLAAGDP----AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAG 225 (513)
T ss_pred HHhcCCC----CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHH
Confidence 6543211 122344678999999999999999999999999999988888888999999999999999999997 46
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++.+.
T Consensus 226 ~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~ 304 (513)
T PRK07656 226 VNAPLMRGATILPLPV-FDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESE 304 (513)
T ss_pred HHHHHHcCceEEecCc-CCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHH
Confidence 8899999999998653 578899999999999999999999999998766555678999999999999999999999888
Q ss_pred cCCCCeeecccccccccccccCCcccccc--cccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLLQAQS--LAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 573 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~--~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~ 573 (729)
++..+++|.||+||+++....+....... ..++|+|++|++++|+|+++++++.|.. |||++.+..+..+ |++++
T Consensus 305 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~g-y~~~~ 381 (513)
T PRK07656 305 LGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEV--GELLVRGPNVMKG-YYDDP 381 (513)
T ss_pred cCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCc--eEEEEEcchhhhh-hcCCH
Confidence 76338999999999987655444332222 5789999999999999999999999987 9999966544433 34555
Q ss_pred cccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004815 574 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 653 (729)
Q Consensus 574 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 653 (729)
..+...|.. ..||+|||+|++++||.++++||.||+||++|.+|+|.|||++|. .+|+|.+++|++.++...|
T Consensus 382 ~~~~~~~~~------~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~i~~~~v~~~~~~~~g 454 (513)
T PRK07656 382 EATAAAIDA------DGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLY-EHPAVAEAAVIGVPDERLG 454 (513)
T ss_pred HHHhhhhcc------CCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHH-hCCCeeEEEEEecCCcccC
Confidence 666555532 239999999999999999999999999999999999999999995 8999999999999888777
Q ss_pred ceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHH
Q 004815 654 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718 (729)
Q Consensus 654 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~ 718 (729)
+.++++++.++ +. ..+.+++++ .+++.||+|++|..|+++++||+|++||++|++|++
T Consensus 455 -~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 455 -EVGKAYVVLKP-GA-ELTEEELIA----YCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred -ceEEEEEEECC-CC-CCCHHHHHH----HHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 78899999875 33 455566555 577889999999999999999999999999999975
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-67 Score=596.13 Aligned_cols=501 Identities=20% Similarity=0.253 Sum_probs=392.3
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
.+.|.++++++|+++|+++.+.. +.+||+||+++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|
T Consensus 17 ~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G 90 (540)
T PRK05857 17 LDRVFEQARQQPEAIALRRCDGT------SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLG 90 (540)
T ss_pred HHHHHHHHhhCCCcEEEeecCCC------ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 45566778899999999865431 279999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 339 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 339 (729)
++++|+++.++.+++.++++.++++++|+++........+. ..... ...+.+..... .. . +.+...
T Consensus 91 ~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~-------~~-~-~~~~~~ 156 (540)
T PRK05857 91 AIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVP---EALHS--IPVIAVDIAAV-------TR-E-SEHSLD 156 (540)
T ss_pred eEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcccccc---ccccc--cceeEeecccc-------cc-c-cccccc
Confidence 99999999999999999999999999999985421111111 00000 01112211000 00 0 000000
Q ss_pred HhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHH----hhCCCCCCCEEEEccCcchhhhHHH
Q 004815 340 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW----CHMDIRKADIVAWPTNLGWMMGPWL 415 (729)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~ 415 (729)
. ..........+++++|++|||||||.||||+++|+++.+...... ..++...+++++...|+.|+.+++.
T Consensus 157 ~-----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~ 231 (540)
T PRK05857 157 A-----ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWW 231 (540)
T ss_pred c-----cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHH
Confidence 0 000112234678999999999999999999999999876544322 2245667899999999999999988
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
.+.+++.|+++++.+ .++..++++|+++++|++.++|++++.|++.......+++++|.+++||++++....++. ..
T Consensus 232 ~~~~l~~G~~~v~~~--~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~-~~ 308 (540)
T PRK05857 232 ILTCLMHGGLCVTGG--ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFI-EA 308 (540)
T ss_pred HHHHhhcceeEEecC--CChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHH-HH
Confidence 889999999987643 467789999999999999999999999988765555678999999999999987776544 34
Q ss_pred cCCCCeeecccccccccccccCCccc----ccccccccCCCCCcEEEEEcCCCCc-c-----CCCCCceeEEEeeccccC
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLLQ----AQSLAAFSTPAMGCKLFILGNDGCP-I-----PQNVPGMGELALSPLIFG 565 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~v~d~~g~~-~-----p~g~~giGel~v~~~~~~ 565 (729)
+ ++++++.||+||++.......... ....+++|+|++|++++|+|++++. + +.|+. |||+|.+..+.
T Consensus 309 ~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~--Gel~v~g~~~~ 385 (540)
T PRK05857 309 T-GVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASF--GTLWIKSPANM 385 (540)
T ss_pred h-CCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCc--ceEEEeCcchh
Confidence 4 489999999999985433222111 1234789999999999999988763 3 34665 99999665443
Q ss_pred CCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEE
Q 004815 566 ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAI 645 (729)
Q Consensus 566 ~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv 645 (729)
.+ |+++++.+++.|.. | ||+|||+|++++||++++.||.||+||++|++|+|.|||++|. .||+|.+|+|+
T Consensus 386 ~G-Y~~~~~~t~~~~~~-----g--~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~-~~~~V~~~~v~ 456 (540)
T PRK05857 386 LG-YWNNPERTAEVLID-----G--WVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAE-GVSGVREAACY 456 (540)
T ss_pred hh-hhCCccchhhhcCC-----C--ceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHH-hCCCeeEEEEE
Confidence 32 45677777777742 3 9999999999999999999999999999999999999999995 99999999999
Q ss_pred eecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 646 GVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 646 ~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++++...+ +.++++++..+ .......+++++.+.+.+++.|++|++|..|+++++||+|++||+||++|++.+..
T Consensus 457 ~~~~~~~~-~~~~~~vv~~~-~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~ 531 (540)
T PRK05857 457 EIPDEEFG-ALVGLAVVASA-ELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATA 531 (540)
T ss_pred ecCccccc-cceEEEEEeCC-CCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhh
Confidence 99987766 67888887765 32122346788888888999999999999999999999999999999999998874
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-66 Score=592.00 Aligned_cols=511 Identities=20% Similarity=0.224 Sum_probs=406.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.++++++++|+++|+++.+. .+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 34 l~~~~~~~~~~~p~~~a~~~~~~--------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~ 105 (573)
T PRK05605 34 LVDLYDNAVARFGDRPALDFFGA--------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRL 105 (573)
T ss_pred HHHHHHHHHHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 44667888889999999999766 8999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCc-EEEEcCCC-CCc-------------
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL-AIVIPAKG-SSF------------- 323 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~-~~~------------- 323 (729)
|++++|++|.++.+++.+++.+++++++|+++.... ....+.+..... ++.+.... ...
T Consensus 106 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 179 (573)
T PRK05605 106 GAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAP------TVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPAL 179 (573)
T ss_pred CcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHH------HHHhhhhccccceeEeeecccccccccccccccccccc
Confidence 999999999999999999999999999999775321 111111111111 11111000 000
Q ss_pred ------ccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCC-C-
Q 004815 324 ------SMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD-I- 395 (729)
Q Consensus 324 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~- 395 (729)
......+...|.++..................++++++++|||||||.||+|+++|+++...+......+. +
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~ 259 (573)
T PRK05605 180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLG 259 (573)
T ss_pred cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccC
Confidence 00001133456665543211000011223456789999999999999999999999999877665443332 2
Q ss_pred CCCCEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCc
Q 004815 396 RKADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 474 (729)
Q Consensus 396 ~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sL 474 (729)
..++++++..|+.|.++. ..++.++..|+++++.+. .++..+++.|+++++|++.++|++++.|++.......++++|
T Consensus 260 ~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l 338 (573)
T PRK05605 260 DGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPA-PDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGV 338 (573)
T ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhc
Confidence 347899999999998887 456788999999999764 578899999999999999999999999998765566678999
Q ss_pred cEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCC--CCccCCCCC
Q 004815 475 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND--GCPIPQNVP 552 (729)
Q Consensus 475 r~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~--g~~~p~g~~ 552 (729)
|.+++||++++++..+++.+.+ +.++++.||+||++..+...........+++|+|++|+.++|+|++ +++++.|..
T Consensus 339 r~i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~ 417 (573)
T PRK05605 339 RNAFSGAMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEE 417 (573)
T ss_pred cEEEECCCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCe
Confidence 9999999999999998887655 4789999999999876555443333445789999999999999976 588999986
Q ss_pred ceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHH
Q 004815 553 GMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632 (729)
Q Consensus 553 giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L 632 (729)
|||++.+.....+ |+++++.++..|.. | ||+|||+|+++++|+++++||.||+||++|++|+|.|||++|
T Consensus 418 --Gel~v~~~~~~~g-y~~~~~~~~~~~~~-----g--~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l 487 (573)
T PRK05605 418 --GELLVRGPQVFKG-YWNRPEETAKSFLD-----G--WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVL 487 (573)
T ss_pred --eEEEEecCchhhh-hcCChhHhhhcccC-----C--CcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHH
Confidence 9999965544332 35566667666642 4 999999999999999999999999999999999999999999
Q ss_pred hcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhh
Q 004815 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712 (729)
Q Consensus 633 ~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKid 712 (729)
. .||.|.+++|++.++...+ +.+++++++++ +. ..+.+++++ .++++|+.|++|..|+++++||+|++||++
T Consensus 488 ~-~~~~i~~~~v~~~~~~~~~-~~~~~~vv~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~ 559 (573)
T PRK05605 488 R-EHPGVEDAAVVGLPREDGS-EEVVAAVVLEP-GA-ALDPEGLRA----YCREHLTRYKVPRRFYHVDELPRDQLGKVR 559 (573)
T ss_pred H-hCcccceEEEEeeecccCC-eEEEEEEEECC-CC-CCCHHHHHH----HHHHhCccccCCcEEEEeccCCCCCccccc
Confidence 5 9999999999999888777 88999999887 44 355555544 678889999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 004815 713 RRVLRKQLAQL 723 (729)
Q Consensus 713 R~~L~~~~~~~ 723 (729)
|++|++++.+.
T Consensus 560 r~~L~~~~~~~ 570 (573)
T PRK05605 560 RREVREELLEK 570 (573)
T ss_pred HHHHHHHHHHH
Confidence 99999998763
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-67 Score=603.87 Aligned_cols=515 Identities=14% Similarity=0.110 Sum_probs=388.4
Q ss_pred HHhhhhccccCCCCCCeEEEEeec-CCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDE-GDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
...++|+++++++||++|+.+.+. .+..+.++.+||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 46 t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~ 125 (666)
T PLN02614 46 SCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACN 125 (666)
T ss_pred cHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 456778888899999999986421 0011234568999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC------CcEEEEcCCCCCccc-ccCC
Q 004815 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA------PLAIVIPAKGSSFSM-KLRD 329 (729)
Q Consensus 257 ~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~-~~~~ 329 (729)
++|+++||++|.++.+++.+++++++++++|+++.. ...+....+ ..++.+......... ....
T Consensus 126 ~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~ 196 (666)
T PLN02614 126 AHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKK---------ISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETF 196 (666)
T ss_pred HcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHH---------HHHHHHhcccccccceEEEEeCCCChHHhhhhhhc
Confidence 999999999999999999999999999999998642 112222111 122222211000000 0000
Q ss_pred C--CcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhC-----CCCCCCEEE
Q 004815 330 G--DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-----DIRKADIVA 402 (729)
Q Consensus 330 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l 402 (729)
+ ..++++++..... ...+.....++++|+|+|||||||.||||++||+|++..+.+....+ +++++|+++
T Consensus 197 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l 273 (666)
T PLN02614 197 GLVIYAWDEFLKLGEG---KQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYL 273 (666)
T ss_pred CcEEEEHHHHHhhccc---CCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEE
Confidence 1 2356665543221 01112234679999999999999999999999999988776654443 578999999
Q ss_pred EccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC----------------
Q 004815 403 WPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI---------------- 466 (729)
Q Consensus 403 ~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~---------------- 466 (729)
+++|++|.++....+.++..|+++++.+ .++..+++.|+++++|+++++|++++.+.+....
T Consensus 274 ~~lPl~H~~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a 351 (666)
T PLN02614 274 SYLPLAHIFDRVIEECFIQHGAAIGFWR--GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSA 351 (666)
T ss_pred EeccHHHHHHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999988765667788999999875 3678899999999999999999999987642100
Q ss_pred -----------------CC-----------CCC-CCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccC
Q 004815 467 -----------------DG-----------YDW-SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITG 517 (729)
Q Consensus 467 -----------------~~-----------~~l-~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 517 (729)
.. ..+ ++||.+++||+++++.+ .++...++++++++.||+||++..++..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 430 (666)
T PLN02614 352 FSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVS 430 (666)
T ss_pred HHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeee
Confidence 00 001 58999999999999875 5565666668999999999987644333
Q ss_pred CcccccccccccCCCCCcEEEEEc-CC--CCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEe
Q 004815 518 SLLQAQSLAAFSTPAMGCKLFILG-ND--GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRH 594 (729)
Q Consensus 518 ~~~~~~~~~~iG~p~~~~~~~v~d-~~--g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~T 594 (729)
.+......+++|+|+||++++|+| ++ +++++.|+. |||+|.+..+..+ |+++++.|++.|. +| ||+|
T Consensus 431 ~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~--GEl~vrGp~v~~G-Y~~~pe~T~~~f~-----dG--w~~T 500 (666)
T PLN02614 431 LPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPR--GEICIRGKTLFSG-YYKREDLTKEVLI-----DG--WLHT 500 (666)
T ss_pred ccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCC--ceEEEcCCccccc-ccCCHHHhhhhhc-----cC--Cccc
Confidence 322223457999999999999998 33 478999987 9999965544332 4678888988884 14 9999
Q ss_pred CceEEEecCceEEEEcccCCeeec-CceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCC-------
Q 004815 595 GDVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS------- 666 (729)
Q Consensus 595 GDl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~------- 666 (729)
||+|++|+||+|+|+||+||+||+ +|++|+|.|||++| .+||.|.+|+|++... ...++|+|++...
T Consensus 501 GDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l-~~~p~V~~~~V~g~~~----~~~l~alvv~~~~~~~~~~~ 575 (666)
T PLN02614 501 GDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIY-GEVQAVDSVWVYGNSF----ESFLVAIANPNQQILERWAA 575 (666)
T ss_pred ceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHH-hcCCCeeEEEEEecCC----cceEEEEEeCCHHHHHHHHH
Confidence 999999999999999999999997 69999999999999 4999999999998542 1479999997641
Q ss_pred --CCCC-----CChHHHHHHHHHHH-----HhhCCCCCccceEEeCCC-C-----CCCCCChhhHHHHHHHHHh
Q 004815 667 --NYTP-----PDLNQLRMSFNSAV-----QKKLNPLFKVSHVVPLPS-L-----PRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 667 --~~~~-----~~~~~l~~~l~~~l-----~~~L~~~~~P~~i~~v~~-l-----P~t~~GKidR~~L~~~~~~ 722 (729)
+... ....++++.+.+.+ ++.|+.|.+++.|..+++ + -+||++|+.|+.+.+.+.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~ 649 (666)
T PLN02614 576 ENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQS 649 (666)
T ss_pred hcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHH
Confidence 1100 11123444444443 456999999999988764 3 3899999999999888765
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-66 Score=589.72 Aligned_cols=516 Identities=19% Similarity=0.192 Sum_probs=415.1
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|++.++++|+++|+++.+.+ ..+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 18 l~~~l~~~~~~~~~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~ 91 (559)
T PRK08315 18 IGQLLDRTAARYPDREALVYRDQG------LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKI 91 (559)
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCC------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 456788888899999999985432 37999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhc-------------C--CcEEEEcCCCCCc
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ-------------A--PLAIVIPAKGSSF 323 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~i~~~~~~~ 323 (729)
|++++|++|.++.+++..+++.++++++++++..... ..+.........+ + ...+.+...
T Consensus 92 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 166 (559)
T PRK08315 92 GAILVTINPAYRLSELEYALNQSGCKALIAADGFKDS-DYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE---- 166 (559)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCCCEEEEecccccc-chHHHHHHhhhhhhcccccccccccCCCceeEEeeccc----
Confidence 9999999999999999999999999999998753211 0011111111110 0 011111110
Q ss_pred ccccCCCCcCHHHHHHHhhccccC--ccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEE
Q 004815 324 SMKLRDGDISWLDFLERVRKLKEN--EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV 401 (729)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 401 (729)
...+...|.++.......... ........+++++|++|||||||.||||.++|+++...+......+++.++|++
T Consensus 167 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~ 243 (559)
T PRK08315 167 ---KHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRL 243 (559)
T ss_pred ---CCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceE
Confidence 011234555554432110000 111233567899999999999999999999999999888888888999999999
Q ss_pred EEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEee
Q 004815 402 AWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGST 480 (729)
Q Consensus 402 l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~g 480 (729)
+...|+.|..+. +.++.+|..|+++++.....++..+++.++++++|++.++|+++..++........++++||.+++|
T Consensus 244 ~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~ 323 (559)
T PRK08315 244 CIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMA 323 (559)
T ss_pred EEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEec
Confidence 999999998887 5688999999999977666788899999999999999999999998887655555678999999999
Q ss_pred cCCCCHhHHHHHHhccCCCCeeecccccccccccccCCccc--ccccccccCCCCCcEEEEEcCC-CCccCCCCCceeEE
Q 004815 481 GEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ--AQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGEL 557 (729)
Q Consensus 481 Ge~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~~~~~~v~d~~-g~~~p~g~~giGel 557 (729)
|++++.++++++.+.++..+++|.||+||++.+++...... .....++|+|++|++++|+|++ +++++.|+. |||
T Consensus 324 G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--GEl 401 (559)
T PRK08315 324 GSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQ--GEL 401 (559)
T ss_pred CCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCc--eEE
Confidence 99999999999888877667999999999987544333221 2345789999999999999988 999999997 999
Q ss_pred EeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCC
Q 004815 558 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 637 (729)
Q Consensus 558 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p 637 (729)
+|.+..+..+ |+++++.++..|.. .+||+|||+|++++||.++|+||.|++||++|++|++.|||++|. .+|
T Consensus 402 ~v~g~~~~~g-y~~~~~~~~~~~~~------~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~-~~~ 473 (559)
T PRK08315 402 CTRGYSVMKG-YWNDPEKTAEAIDA------DGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLY-THP 473 (559)
T ss_pred EEECchhhhh-hcCChhHHhhcCCC------CCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHH-hCC
Confidence 9966544433 35566666666632 239999999999999999999999999999999999999999995 899
Q ss_pred CeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 638 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 638 ~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
+|.+|+|++++++..+ +.++++|++.. +. ..+..++++ .+++.||.|++|..|+++++||+|++||++|++|+
T Consensus 474 ~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~~-~~~~~~l~~----~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~ 546 (559)
T PRK08315 474 KIQDVQVVGVPDEKYG-EEVCAWIILRP-GA-TLTEEDVRD----FCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMR 546 (559)
T ss_pred CceEEEEEecCCCCCC-eEEEEEEEeCC-CC-CCCHHHHHH----HHHhhcccccCCcEEEEcccCCCCCCCceeHHHHH
Confidence 9999999999887766 78899998876 33 345555555 57788999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 004815 718 KQLAQLDQ 725 (729)
Q Consensus 718 ~~~~~~~~ 725 (729)
+++.++.+
T Consensus 547 ~~~~~~~~ 554 (559)
T PRK08315 547 EMMIEELG 554 (559)
T ss_pred HHHHhhhc
Confidence 99887544
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-66 Score=587.38 Aligned_cols=516 Identities=21% Similarity=0.255 Sum_probs=404.1
Q ss_pred CCcCCCCcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Q 004815 168 GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (729)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (729)
..|......+...++|+++++++||++|+++.+.. +.+||+||.++++++|++|.+.|+++||+|+|+++|+++
T Consensus 7 ~~~~~~~~~~~l~~~l~~~a~~~p~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~ 80 (534)
T PRK05852 7 AAPMASDFGPRIADLVEVAATRLPEAPALVVTADR------IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAE 80 (534)
T ss_pred ccchhhhhcccHHHHHHHHHHhCCCCcEEEecCCC------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHH
Confidence 45655666666778898899999999999985531 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCccccc
Q 004815 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKL 327 (729)
Q Consensus 248 ~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 327 (729)
+++++|||+++|++++|++|.++.+++.+++++++++++|++........ .. .... ....+.+......
T Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-~~----~~~~-~~~~~~~~~~~~~----- 149 (534)
T PRK05852 81 FVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRA-EP----TTRW-WPLTVNVGGDSGP----- 149 (534)
T ss_pred HHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhc-cc----cccc-cceeeeecccccc-----
Confidence 99999999999999999999999999999999999999999864221000 00 0000 0111111111000
Q ss_pred CCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCc
Q 004815 328 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNL 407 (729)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 407 (729)
..+.... ....... ...........++++++++|||||||.||||+++|+++.+.+......+++.++|++++.+|+
T Consensus 150 ~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 226 (534)
T PRK05852 150 SGGTLSV-HLDAATE--PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPL 226 (534)
T ss_pred ccccccc-ccccccC--CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCc
Confidence 0000000 0000000 000001111225678999999999999999999999999988888888899999999999999
Q ss_pred chhhhH-HHHHHHhhcCceEEEeCC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCC--CCCCCCccEEEeecCC
Q 004815 408 GWMMGP-WLVYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID--GYDWSSIRCFGSTGEA 483 (729)
Q Consensus 408 ~~~~~~-~~i~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~--~~~l~sLr~v~~gGe~ 483 (729)
.|..++ ..++.++..|+++++.+. ..++..+++.|+++++|.+.++|+++..|.+..... ..+++++|.++++|++
T Consensus 227 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~ 306 (534)
T PRK05852 227 YHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAP 306 (534)
T ss_pred chhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCC
Confidence 999988 458889999999888653 346778999999999999999999999998764322 2346899999999999
Q ss_pred CCHhHHHHHHhccCCCCeeecccccccccccccCCcc----cccccccccCC--CCCcEEEEEcCCCCccCCCCCceeEE
Q 004815 484 SNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTP--AMGCKLFILGNDGCPIPQNVPGMGEL 557 (729)
Q Consensus 484 l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~----~~~~~~~iG~p--~~~~~~~v~d~~g~~~p~g~~giGel 557 (729)
+++++.+++.+.++ .++++.||+||++..++..... ......++|.+ .+|++++|+|++|++++.|+. |||
T Consensus 307 ~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~g~~--Gel 383 (534)
T PRK05852 307 LTAETAQALQTEFA-APVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAV--GEV 383 (534)
T ss_pred CCHHHHHHHHHHhC-CChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCCCCc--eEE
Confidence 99999999887764 8899999999998654432221 01111233444 799999999999999999987 999
Q ss_pred EeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCC
Q 004815 558 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 637 (729)
Q Consensus 558 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p 637 (729)
+|.+..+..+ |+++++.+++.|.. | ||+|||+|++|+||++++.||.||+||++|.+|+|.|||++|. .||
T Consensus 384 ~v~g~~v~~g-Y~~~~~~t~~~~~~-----g--~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~-~~~ 454 (534)
T PRK05852 384 WLRGTTVVRG-YLGDPTITAANFTD-----G--WLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLA-SHP 454 (534)
T ss_pred EEecCcccch-hcCCcccchhhhcC-----C--CcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHH-hCC
Confidence 9966554433 35677777776642 3 9999999999999999999999999999999999999999995 999
Q ss_pred CeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 638 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 638 ~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
+|.+|+|++++++..+ +.++++|+.++ +. ..+.+++.+ .++++||+|++|..|+++++||+|++||++|++|+
T Consensus 455 ~V~~~~v~g~~~~~~g-~~~~~~vv~~~-~~-~~~~~~i~~----~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~ 527 (534)
T PRK05852 455 NVMEAAVFGVPDQLYG-EAVAAVIVPRE-SA-PPTAEELVQ----FCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVA 527 (534)
T ss_pred CeeeEEEEecCCcCcC-ceEEEEEEECC-CC-CCCHHHHHH----HHHHhcccccCCeEEEEhhhcCCCCCccccHHHHH
Confidence 9999999999988777 78999998765 33 345555555 57788999999999999999999999999999999
Q ss_pred HHHHh
Q 004815 718 KQLAQ 722 (729)
Q Consensus 718 ~~~~~ 722 (729)
+++..
T Consensus 528 ~~~~~ 532 (534)
T PRK05852 528 EQFGH 532 (534)
T ss_pred HHhcc
Confidence 98753
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-66 Score=583.63 Aligned_cols=505 Identities=19% Similarity=0.230 Sum_probs=411.2
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
.++|.++++++|+++|+.+.++ ++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 3 ~~~~~~~~~~~p~~~a~~~~~~--------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G 74 (515)
T TIGR03098 3 HHLLEDAAARLPDATALVHHDR--------TLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAG 74 (515)
T ss_pred HHHHHHHHHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 4567777888999999999776 99999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
++++|+++.++.+++..++++++++++++++... ............ ..+.+...... .........|+++
T Consensus 75 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 146 (515)
T TIGR03098 75 GVFVPINPLLKAEQVAHILADCNVRLLVTSSERL------DLLHPALPGCHDLRTLILVGEPAHA--SEGGGESPSWPKL 146 (515)
T ss_pred EEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchh------hhhHhhhhcccccceEEEecCcccc--cCCccccccHHHh
Confidence 9999999999999999999999999999986422 111111111111 22233221111 0001123456655
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~ 417 (729)
..... .........+++++++|||||||.||||+++|+++...+......+++.++|++++..|++|++++..++
T Consensus 147 ~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 221 (515)
T TIGR03098 147 LALGD-----ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLT 221 (515)
T ss_pred hcccc-----ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHH
Confidence 43221 1122334568999999999999999999999999998888777788899999999999999999998889
Q ss_pred HHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccC
Q 004815 418 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 497 (729)
Q Consensus 418 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~ 497 (729)
.++..|+++++.+. .++..+.+.++++++|++.++|+++..|.+... ...+++++|.+++||+++++++.+++++.++
T Consensus 222 ~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~ 299 (515)
T TIGR03098 222 TAFYVGATVVLHDY-LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLP 299 (515)
T ss_pred HHHHcCCEEEEcCC-CCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCC
Confidence 99999999998764 678899999999999999999999999986532 2245789999999999999999999998887
Q ss_pred CCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccc
Q 004815 498 YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYD 577 (729)
Q Consensus 498 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~ 577 (729)
+.++++.||+||++..+...........+++|+|++|++++|+|+++++++.|+. |||++.+..+..+ |+++++.++
T Consensus 300 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~g-y~~~~~~~~ 376 (515)
T TIGR03098 300 NARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEE--GELVHRGALVAMG-YWNDPEKTA 376 (515)
T ss_pred CCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCCCc--eEEEEcCchhhcc-ccCCchhhh
Confidence 7889999999998754433222223456789999999999999999999999986 9999966544332 355667777
Q ss_pred cccccccC-----CCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004815 578 VYFSGMPS-----RNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652 (729)
Q Consensus 578 ~~f~~~p~-----~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~ 652 (729)
..|...+. ..+.+||+|||+|++++||++++.||.||+||++|.+|+|.|||++|. .||.|.+|+|++++++..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~ 455 (515)
T TIGR03098 377 ERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAY-ATGLVAEAVAFGVPDPTL 455 (515)
T ss_pred hhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHh-cCCCeeEEEEEeccCccc
Confidence 77765443 123468999999999999999999999999999999999999999995 999999999999998887
Q ss_pred CceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHH
Q 004815 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718 (729)
Q Consensus 653 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~ 718 (729)
| +.++++++... +. ..+..++++ .++++|+++++|..|+++++||+|++||++|++|++
T Consensus 456 g-~~~~~~~~~~~-~~-~~~~~~l~~----~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 456 G-QAIVLVVTPPG-GE-ELDRAALLA----ECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred C-ceEEEEEEeCC-CC-CCCHHHHHH----HHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 7 78999988655 33 345555555 577889999999999999999999999999999864
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-66 Score=579.97 Aligned_cols=477 Identities=21% Similarity=0.259 Sum_probs=397.7
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
.+.|.+++.++||++|+++.++ .+||+||+++++++|++|.+.|+++||+|+++++|+.++++++|||+++|
T Consensus 5 ~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G 76 (483)
T PRK03640 5 PNWLKQRAFLTPDRTAIEFEEK--------KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLG 76 (483)
T ss_pred HHHHHHHHHhCCCceEEEeCCe--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCC
Confidence 4567788899999999998876 99999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 339 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 339 (729)
++++|+++.++.+++.+++++++++++++++.... .... . ....+.++..
T Consensus 77 ~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~---------~~~~-~--------------------~~~~~~~~~~ 126 (483)
T PRK03640 77 AVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEA---------KLIP-G--------------------ISVKFAELMN 126 (483)
T ss_pred cEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhH---------HHhh-h--------------------ccccHHHHhh
Confidence 99999999999999999999999999999874321 0000 0 0111333332
Q ss_pred HhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHH
Q 004815 340 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 419 (729)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~ 419 (729)
... ..........++++++++|||||||.||||+++|+++...+......++++++|++++..|++|..++..++.+
T Consensus 127 ~~~---~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 203 (483)
T PRK03640 127 GPK---EEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRS 203 (483)
T ss_pred ccc---ccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHH
Confidence 211 11112234567899999999999999999999999988877777777899999999999999999998888899
Q ss_pred hhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCC
Q 004815 420 LLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 499 (729)
Q Consensus 420 L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~ 499 (729)
+..|+++++.+. .++..+++.|+++++|++.++|+++..|.+..... ...++||.+++||+++++...+++... ++
T Consensus 204 l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~ 279 (483)
T PRK03640 204 VIYGMRVVLVEK-FDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GI 279 (483)
T ss_pred HhcCCEEEecCC-CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CC
Confidence 999999999874 67889999999999999999999999998654322 234689999999999999998887653 58
Q ss_pred CeeecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccccc
Q 004815 500 PVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 578 (729)
Q Consensus 500 ~l~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~ 578 (729)
++++.||+||++..+...... .....+++|+|+++++++|.|++ +++|.|++ |||++++..+..+ |+++++.++.
T Consensus 280 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~-~~~~~g~~--Gel~v~g~~~~~g-y~~~~~~~~~ 355 (483)
T PRK03640 280 PVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDG-VVVPPFEE--GEIVVKGPNVTKG-YLNREDATRE 355 (483)
T ss_pred CeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecCC-CcCCCCCc--eEEEEECcchhhh-hcCCHHHHHH
Confidence 899999999987644333322 23456789999999999999864 89999997 9999966544432 3456666666
Q ss_pred ccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 579 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
.|.. | ||+|||++++++||+++++||+||+||++|.+|++.|||+++. .+|+|.+++|++.+++..+ ..++
T Consensus 356 ~~~~-----~--~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~-~~~~v~~~~v~~~~~~~~~-~~~~ 426 (483)
T PRK03640 356 TFQD-----G--WFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLL-SHPGVAEAGVVGVPDDKWG-QVPV 426 (483)
T ss_pred HHhc-----C--CeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeCCCcccC-CceE
Confidence 6642 3 9999999999999999999999999999999999999999995 9999999999998887766 7788
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 659 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 659 a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++++... ..+.+++++ ++++.|++|++|..|+.+++||+|++||++|++|++++.+
T Consensus 427 ~~~~~~~----~~~~~~l~~----~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 427 AFVVKSG----EVTEEELRH----FCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred EEEEeCC----CCCHHHHHH----HHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 8888655 356666655 5778899999999999999999999999999999999875
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-66 Score=580.14 Aligned_cols=486 Identities=21% Similarity=0.193 Sum_probs=400.0
Q ss_pred hhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
+.|+++++++||++|++++++ .+||+||.++++++|++|++ .|+++|++|+++++|++++++++|||+++|
T Consensus 6 ~~~~~~a~~~p~~~a~~~~~~--------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G 77 (496)
T PRK06839 6 YWIEKRAYLHPDRIAIITEEE--------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVE 77 (496)
T ss_pred HHHHHHHHHCCCCeEEEECCc--------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 457778889999999998766 99999999999999999985 799999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC-CcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA-PLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
++++|+++.++.+++.+++++++++++++++... +....+..... ...+.+. ++.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 136 (496)
T PRK06839 78 CIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQ------NMALSMQKVSYVQRVISIT---------------SLKEIE 136 (496)
T ss_pred cEEEecCcccCHHHHHHHHHhcCceEEEEcHHHH------HHHHHhhhccCcceEEEec---------------chHhhh
Confidence 9999999999999999999999999999987532 11111111111 0111111 122222
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HHHH
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVY 417 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~ 417 (729)
... ........++++++++|||||||.||+|+++|+++..........+++..+|+++..+|+.|..+. +.++
T Consensus 137 ~~~------~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 210 (496)
T PRK06839 137 DRK------IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAF 210 (496)
T ss_pred ccC------CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHH
Confidence 111 111223456899999999999999999999999987766666677889999999999999999887 4567
Q ss_pred HHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccC
Q 004815 418 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 497 (729)
Q Consensus 418 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~ 497 (729)
.++..|+++++.+ ..++..++++++++++|++.++|++++.|++.......+++++|.+++||++++++..+++...
T Consensus 211 ~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-- 287 (496)
T PRK06839 211 PTLFAGGVIIVPR-KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR-- 287 (496)
T ss_pred HHHhcCcEEEEcc-CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--
Confidence 8999999998865 4688899999999999999999999999988765555678899999999999999999988765
Q ss_pred CCCeeecccccccccccccCCc-ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccc
Q 004815 498 YKPVIEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY 576 (729)
Q Consensus 498 ~~~l~~~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~ 576 (729)
++++++.||+||++..+..... ......+++|+|+++++++|+|++++.++.|+. |||+|.+..+.. .|+++++.+
T Consensus 288 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~-gy~~~~~~~ 364 (496)
T PRK06839 288 GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEV--GELLIRGPNVMK-EYWNRPDAT 364 (496)
T ss_pred CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCc--eEEEEECCCcch-hhcCChHHH
Confidence 5899999999999864433222 222345789999999999999999999999987 999996655433 235566666
Q ss_pred ccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCcee
Q 004815 577 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQ 656 (729)
Q Consensus 577 ~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 656 (729)
+..|. +| ||+|||+|++++||+++++||.||+||++|.+|+|.|||++|. .+|+|.+|+|++.+++..| +.
T Consensus 365 ~~~~~-----~g--~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~ 435 (496)
T PRK06839 365 EETIQ-----DG--WLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVIN-KLSDVYEVAVVGRQHVKWG-EI 435 (496)
T ss_pred HHHHc-----CC--CeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-ce
Confidence 55542 13 9999999999999999999999999999999999999999995 8999999999999988877 78
Q ss_pred EEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 657 LTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 657 l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++++|++++ +. ..+.+++++ ++++.|++|++|..|++++++|+|++||++|++|+++..+
T Consensus 436 ~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 436 PIAFIVKKS-SS-VLIEKDVIE----HCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred EEEEEEECC-CC-CCCHHHHHH----HHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence 999999887 44 345555554 6778899999999999999999999999999999988764
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-66 Score=585.45 Aligned_cols=498 Identities=22% Similarity=0.239 Sum_probs=402.7
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
.+.|.++++++||++|+++.+. ++||+||.++++++|+.|++.|+++||+|+|+++|+++++++++||+++|
T Consensus 10 ~~~~~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G 81 (528)
T PRK07470 10 AHFLRQAARRFPDRIALVWGDR--------SWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLG 81 (528)
T ss_pred HHHHHHHHHHCCCceEEEECCc--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCC
Confidence 3567778889999999998766 89999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
++++|+++.++.+++.+++++++++.+++++.... ....+.+.... ..+.+.. . .....+.++
T Consensus 82 ~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~ 146 (528)
T PRK07470 82 AVWVPTNFRQTPDEVAYLAEASGARAMICHADFPE------HAAAVRAASPDLTHVVAIGG--A-------RAGLDYEAL 146 (528)
T ss_pred eEEEecCccCCHHHHHHHHHhcCceEEEEcchhHH------HHHHHHhhCCcCceEEEeCC--C-------cccccHHHH
Confidence 99999999999999999999999999999875321 11122221111 1222221 1 112355555
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh--CCCCCCCEEEEccCcchhhhHHH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIVAWPTNLGWMMGPWL 415 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~ 415 (729)
...... .........++++++|+|||||||.||||+++|+++...+...... .+..++|+++..+|++|++++..
T Consensus 147 ~~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 223 (528)
T PRK07470 147 VARHLG---ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ 223 (528)
T ss_pred HhcCCC---CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH
Confidence 443211 1122334567899999999999999999999999987654433222 25678999999999999999876
Q ss_pred HHHHhhcCceEEEeCC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 416 VYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
++ .++.|++.++.+. ..++..+++.|+++++|++.++|++++.+.+.......+++++|.+++||+++++....++..
T Consensus 224 ~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~ 302 (528)
T PRK07470 224 LC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALA 302 (528)
T ss_pred HH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHH
Confidence 54 6778888877753 457788999999999999999999999998876555567889999999999999999888877
Q ss_pred ccCCCCeeecccccccccccccCCcc-------cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCC
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLL-------QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGAS 567 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~-------~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~ 567 (729)
.++ .++++.||+||++..+...... .....+++|.|++|++++|+|++|++++.|+. |||++.+..+..+
T Consensus 303 ~~g-~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~i~~~~~~~g 379 (528)
T PRK07470 303 KLG-KVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGET--GEICVIGPAVFAG 379 (528)
T ss_pred HhC-cHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCc--eEEEEeCCccchh
Confidence 665 6899999999988654432211 12234688999999999999999999999986 9999966544433
Q ss_pred cccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEee
Q 004815 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 647 (729)
Q Consensus 568 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~ 647 (729)
|+++++.++..|.. | ||+|||+|++++||+++++||.||+||++|+||+|.|||++|. .+|+|.+|+|++.
T Consensus 380 -y~~~~~~~~~~~~~-----~--~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~ 450 (528)
T PRK07470 380 -YYNNPEANAKAFRD-----G--WFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLL-THPAVSEVAVLGV 450 (528)
T ss_pred -hcCCHHHHHhhhcC-----C--cEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHH-hCCCceEEEEEec
Confidence 45667777666642 3 9999999999999999999999999999999999999999995 8999999999999
Q ss_pred cCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 648 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 648 ~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
+++..| +.++++++..+ +. ..+.+++++ ++++.||+|++|..++++++||+|++||++|+.|++++.+.
T Consensus 451 ~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~----~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 519 (528)
T PRK07470 451 PDPVWG-EVGVAVCVARD-GA-PVDEAELLA----WLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER 519 (528)
T ss_pred cCcccC-ceeEEEEEECC-CC-CCCHHHHHH----HHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhc
Confidence 988776 78888888876 43 355555555 57788999999999999999999999999999999998874
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=586.82 Aligned_cols=516 Identities=18% Similarity=0.181 Sum_probs=413.1
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|.+.++++|+++|+++.+.+ +.+||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||++
T Consensus 19 ~l~~~l~~~~~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~ 92 (558)
T PRK12583 19 TIGDAFDATVARFPDREALVVRHQA------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATAR 92 (558)
T ss_pred cHHHHHHHHHHHCCCCeEEEecCCC------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 3567888888999999999985432 3899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhh-------------cCCcEEEEcCCCCCcc
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA-------------QAPLAIVIPAKGSSFS 324 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~ 324 (729)
+|++++|++|.++.+++.+++++++++++|+++..... +........... .+....++.....
T Consensus 93 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (558)
T PRK12583 93 IGAILVNINPAYRASELEYALGQSGVRWVICADAFKTS-DYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA--- 168 (558)
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCCcEEEEecccccc-chhHHHHHHhhhhccccccccccccCCcceEEEEecCC---
Confidence 99999999999999999999999999999998753211 111111111111 0000111111000
Q ss_pred cccCCCCcCHHHHHHHhhcccc--CccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEE
Q 004815 325 MKLRDGDISWLDFLERVRKLKE--NEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVA 402 (729)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l 402 (729)
.......|++.......... .........++++++++|||||||.||||.++|+++.+.+......+++.++|+++
T Consensus 169 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~ 246 (558)
T PRK12583 169 --PPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLC 246 (558)
T ss_pred --CCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEE
Confidence 01122345544332211000 01111234578999999999999999999999999998888877888999999999
Q ss_pred EccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeec
Q 004815 403 WPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481 (729)
Q Consensus 403 ~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gG 481 (729)
...|+.|.++. +.++.++..|+++++.....++..+++.|+++++|++..+|+++..++........+++++|.+++||
T Consensus 247 ~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G 326 (558)
T PRK12583 247 VPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAG 326 (558)
T ss_pred EecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecC
Confidence 99999999997 56888999999999877667888899999999999999999999888876554556789999999999
Q ss_pred CCCCHhHHHHHHhccCCCCeeecccccccccccccCCcc--cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEe
Q 004815 482 EASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL--QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL 559 (729)
Q Consensus 482 e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v 559 (729)
+++++++.+++.+.++..++++.||+||++.++...... ......++|+|++++.++|+|+++++++.|+. |||+|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--Gel~v 404 (558)
T PRK12583 327 APCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEI--GELCT 404 (558)
T ss_pred CCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCe--eEEEE
Confidence 999999999998888777899999999998765443221 12245789999999999999999999999986 99999
Q ss_pred eccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCe
Q 004815 560 SPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNV 639 (729)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V 639 (729)
.+..+..+ |+++++.+...|.. ..||+|||+|++++||++++.||.|++||++|.+|+|.|||++|. .||+|
T Consensus 405 ~g~~~~~g-y~~~~~~~~~~~~~------~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v 476 (558)
T PRK12583 405 RGYSVMKG-YWNNPEATAESIDE------DGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLF-THPAV 476 (558)
T ss_pred EeCccchh-hcCChHHHHhhcCC------CCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHH-hCCCe
Confidence 66544332 35566666665532 239999999999999999999999999999999999999999995 89999
Q ss_pred eeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHH
Q 004815 640 LETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 719 (729)
Q Consensus 640 ~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~ 719 (729)
.+|+|+++++...+ +.++++++..+ +. ..+..++++ .++++||+|++|..++++++||+|++||++|++|+++
T Consensus 477 ~~~~v~~~~~~~~~-~~~~~~v~~~~-~~-~~~~~~i~~----~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~ 549 (558)
T PRK12583 477 ADVQVFGVPDEKYG-EEIVAWVRLHP-GH-AASEEELRE----FCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREI 549 (558)
T ss_pred eEEEEEeeecCCCC-cEEEEEEEECC-CC-CCCHHHHHH----HHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHH
Confidence 99999999887766 78999999876 43 344555555 5778999999999999999999999999999999998
Q ss_pred HHh
Q 004815 720 LAQ 722 (729)
Q Consensus 720 ~~~ 722 (729)
..+
T Consensus 550 ~~~ 552 (558)
T PRK12583 550 SIE 552 (558)
T ss_pred HHh
Confidence 765
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=584.75 Aligned_cols=504 Identities=19% Similarity=0.212 Sum_probs=402.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|.++++++|+++|+++...+ +.+||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++
T Consensus 30 ~~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 103 (546)
T PLN02330 30 LPDFVLQDAELYADKVAFVEAVTG------KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAA 103 (546)
T ss_pred HHHHHhhhhhcCCCccEEEecCCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHh
Confidence 446677788899999999874321 28999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
|++++|++|.++.+++.+++++++++++|+++...... +......+++.... ......|.+++
T Consensus 104 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~----------~~~~~~~i~~~~~~-------~~~~~~~~~~~ 166 (546)
T PLN02330 104 GGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKV----------KGLGLPVIVLGEEK-------IEGAVNWKELL 166 (546)
T ss_pred CcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhH----------hhcCCcEEEecCCC-------CCCcccHHHHH
Confidence 99999999999999999999999999999998643211 11222233332111 12345577766
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCC--CCCCCEEEEccCcchhhhHH-H
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD--IRKADIVAWPTNLGWMMGPW-L 415 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~-~ 415 (729)
..... ...........++++++++|||||||.||||+++|+++...+......++ ....++++...|+.|.++.. .
T Consensus 167 ~~~~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~ 245 (546)
T PLN02330 167 EAADR-AGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGI 245 (546)
T ss_pred hhccc-cCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHH
Confidence 54321 11111223345789999999999999999999999998876544321111 22346788889999988874 5
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCC--CccEEEeecCCCCHhHHHHHH
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWS--SIRCFGSTGEASNVDEYLWLM 493 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~--sLr~v~~gGe~l~~~~~~~~~ 493 (729)
++.+|..|+++++.+. .++..+++.++++++|.+.++|+++..|+........+++ ++|.+++||+++++++.+++.
T Consensus 246 ~~~~l~~g~~~~~~~~-~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~ 324 (546)
T PLN02330 246 CCATLRNKGKVVVMSR-FELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFE 324 (546)
T ss_pred HHHHhhcCCEEEEecc-cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHH
Confidence 7789999999998864 6788999999999999999999999999876544444444 478999999999999999999
Q ss_pred hccCCCCeeecccccccccccccCCccc----ccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCc
Q 004815 494 GRALYKPVIEYCGGTEIGGGFITGSLLQ----AQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 494 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~ 568 (729)
+.++++++++.||+||++.+........ .....++|+|++|++++|+| ++++++|.|+. |||+|++..+..+
T Consensus 325 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~--Gel~v~g~~~~~g- 401 (546)
T PLN02330 325 AKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTP--GELCVRSQCVMQG- 401 (546)
T ss_pred HHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCc--eEEEEecchhhhh-
Confidence 8887899999999999875433221111 12345899999999999999 56899999987 9999966554433
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeec
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 648 (729)
|+++++.++..|.. ++||+|||+|++++||+++++||.||+||++|++|+|.|||++|. ++|+|.+++|++++
T Consensus 402 y~~~~~~~~~~~~~------~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~ 474 (546)
T PLN02330 402 YYNNKEETDRTIDE------DGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILL-THPSVEDAAVVPLP 474 (546)
T ss_pred hccCccchhhhccC------CCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHH-hCCchheEEEEecc
Confidence 35566666665532 349999999999999999999999999999999999999999995 89999999999998
Q ss_pred CCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhh
Q 004815 649 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724 (729)
Q Consensus 649 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~ 724 (729)
++..| +.++++|++.+ +. ..+.+++++ +++++|++|++|+.|+++++||+|++||++|++|++++....
T Consensus 475 ~~~~g-~~~~a~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~~ 543 (546)
T PLN02330 475 DEEAG-EIPAACVVINP-KA-KESEEDILN----FVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSIN 543 (546)
T ss_pred ccccC-ceeEEEEEECC-CC-CCCHHHHHH----HHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhhh
Confidence 88777 78999998876 43 344455544 677889999999999999999999999999999999997763
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=599.35 Aligned_cols=505 Identities=17% Similarity=0.151 Sum_probs=389.3
Q ss_pred HhhhhccccCCCCCCeEEEEeecC-CCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEG-DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
..++|+++++++||++|+++.+.. ...+..+.+||+||+++++++|++|.+. +++||+|+|+++|++++++++|||++
T Consensus 23 l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~~~ 101 (631)
T PRK07769 23 LVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGALY 101 (631)
T ss_pred HHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHHHH
Confidence 346678888889999999985421 0112345899999999999999999987 89999999999999999999999999
Q ss_pred cCCEEEec-CCCCC--HHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC----CcEEEEcCCCCCcccccCCC
Q 004815 258 AGYIVVSI-ADSFA--SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA----PLAIVIPAKGSSFSMKLRDG 330 (729)
Q Consensus 258 aGa~~vpl-dp~~~--~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~ 330 (729)
+|++++|+ ++..+ .+++.+++++++++++|+++... +.........+ ..++.+... ..
T Consensus 102 ~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 166 (631)
T PRK07769 102 AGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSA------EGVRKFFRARPAKERPRVIAVDAV---------PD 166 (631)
T ss_pred cCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHH------HHHHHHHhhccccccceEEEcccc---------cc
Confidence 99999999 56665 68899999999999999987532 11111111111 111111100 00
Q ss_pred CcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchh
Q 004815 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWM 410 (729)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 410 (729)
. . ..........++++++|+|||||||.||||+++|+++...+......+++.++|+++..+|++|+
T Consensus 167 ~------~-------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~ 233 (631)
T PRK07769 167 E------V-------GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHD 233 (631)
T ss_pred c------c-------ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCc
Confidence 0 0 00111123467899999999999999999999999999888877788899999999999999999
Q ss_pred hhHHHHHHHhhcCceEEEeCC-CC--ChhhHHHHHHHcCC---cEEEecHHHHHHHHhc---CC--CCCCCCCCccEEEe
Q 004815 411 MGPWLVYASLLNGASIALYNG-SP--LGSGFAKFVQDAKV---TMLGVVPSIVRTWKST---NC--IDGYDWSSIRCFGS 479 (729)
Q Consensus 411 ~~~~~i~~~L~~G~~lvl~~~-~~--~~~~l~~~i~~~~v---t~~~~~P~~l~~l~~~---~~--~~~~~l~sLr~v~~ 479 (729)
+++..++.+++.|+++++... .. ++..+++.+.++++ |.+..+|+++..+... .. ....++++||.+++
T Consensus 234 ~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~ 313 (631)
T PRK07769 234 MGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLN 313 (631)
T ss_pred hhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEe
Confidence 999877788889999998854 22 77788999999886 7899999988766542 11 11456899999999
Q ss_pred ecCCCCHhHHHHHHhccC-----CCCeeecccccccccccccCCcccc--------------------------cccccc
Q 004815 480 TGEASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQA--------------------------QSLAAF 528 (729)
Q Consensus 480 gGe~l~~~~~~~~~~~~~-----~~~l~~~YG~TE~~~~~~~~~~~~~--------------------------~~~~~i 528 (729)
||++++++..+++.+.++ ...++|.||+||++..++....... ....++
T Consensus 314 gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~ 393 (631)
T PRK07769 314 GSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSA 393 (631)
T ss_pred ccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeC
Confidence 999999999999887662 2459999999998765443221110 012478
Q ss_pred cCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccC-----------CCCceeEEeCc
Q 004815 529 STPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPS-----------RNGQILRRHGD 596 (729)
Q Consensus 529 G~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~-----------~~g~~~y~TGD 596 (729)
|+|+++++++|+| ++|+++|.|+. |||+|.+..+..+ |+++++.|++.|...+. ..+.+||+|||
T Consensus 394 G~~~~~~~~~ivd~~~g~~~~~ge~--GEl~v~gp~v~~G-Y~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGD 470 (631)
T PRK07769 394 GKVGVSEWAVIVDPETASELPDGQI--GEIWLHGNNIGTG-YWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGD 470 (631)
T ss_pred CCcCCCcEEEEEcCCCCcCCCCCCE--EEEEecCCCcccc-ccCChhHHHHHHhhhcccccccccccCcccCCCeeeccc
Confidence 9999999999999 57899999986 9999966555433 46778888888864221 12346999999
Q ss_pred eEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeee--eEEEeecC-------------------CCCCce
Q 004815 597 VFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLE--TAAIGVPP-------------------PDGGPE 655 (729)
Q Consensus 597 l~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~--a~Vv~~~~-------------------~~~g~~ 655 (729)
+|+++ ||+|+|+||.||+||++|++|+|.|||++|...||.|.+ |+|+++++ +..| +
T Consensus 471 lg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~g-e 548 (631)
T PRK07769 471 YGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTS-E 548 (631)
T ss_pred cccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCC-c
Confidence 99995 999999999999999999999999999999534899998 89999988 4456 7
Q ss_pred eEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCC-CC-ccceEEeCC--CCCCCCCChhhHHHHHHHHHh
Q 004815 656 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNP-LF-KVSHVVPLP--SLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 656 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~-~~-~P~~i~~v~--~lP~t~~GKidR~~L~~~~~~ 722 (729)
.++++|++++ +....+.++|.+++++ +|+. |+ .|..+++++ +||+|++|||+|++|++.+.+
T Consensus 549 ~~~a~v~~~~-~~~~~~~~~l~~~~~~----~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 549 QLVIVAERAP-GAHKLDPQPIADDIRA----AIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD 614 (631)
T ss_pred cEEEEEEecC-ccccccHHHHHHHHHH----HHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence 8999999887 4213466677776554 4543 45 477888886 799999999999999998765
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-66 Score=606.30 Aligned_cols=500 Identities=17% Similarity=0.138 Sum_probs=384.0
Q ss_pred hhhhccccCCCCC-CeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 180 KNCLSVNSKRSLD-DIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 180 ~~~l~~~~~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
.+.|.++++++|+ ++|+.+.+. +++||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++
T Consensus 207 ~~~l~~~~~~~p~~~~a~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~ 278 (718)
T PRK08043 207 YEALLSAQYRYGAGKPCIEDVNF-------TPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLR 278 (718)
T ss_pred HHHHHHHHHHhCCCCcceEcCCC-------CcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHc
Confidence 4557778888998 688875331 2899999999999999999987 599999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
|++++|+++.++.+++++++++++++++|+++......+... +...+.. ..+.+.... ....+.+.
T Consensus 279 G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~---------~~~~~~~~ 345 (718)
T PRK08043 279 RRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWH----LPEQLTQVRWVYLEDLK---------DDVTTADK 345 (718)
T ss_pred CCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCC----hhhhhccccEEEhhhhh---------hhcchhHH
Confidence 999999999999999999999999999999875432111000 1111111 112111100 01111110
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HHH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLV 416 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i 416 (729)
..................++++||++|||||||.||||+++|+++++.+.+....++++++|++++.+|++|.++. ..+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~ 425 (718)
T PRK08043 346 LWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGL 425 (718)
T ss_pred HHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHH
Confidence 0000000000111123467999999999999999999999999999988888788899999999999999999887 568
Q ss_pred HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
+.+|..|+++++.+...++..+++.|+++++|++..+|+++..+.+.. ...++++||.+++||+++++++.+++.+.+
T Consensus 426 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~ 503 (718)
T PRK08043 426 FTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF 503 (718)
T ss_pred HHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc
Confidence 899999999999876556667889999999999999999998876642 335678999999999999999999888766
Q ss_pred CCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccc--ccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL--NAN 574 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~--~~~ 574 (729)
++++++.||+||++..++.... .....+++|+|++|++++|+|+++. |.. |||++.+..+..+| ++ +++
T Consensus 504 -g~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~~~i~d~~~~----~~~--Gel~v~g~~v~~GY-~~~e~~~ 574 (718)
T PRK08043 504 -GLRILEGYGVTECAPVVSINVP-MAAKPGTVGRILPGMDARLLSVPGI----EQG--GRLQLKGPNIMNGY-LRVEKPG 574 (718)
T ss_pred -CCCeecccCcccccceEEecCC-cccCCCCCCCcCCCCeeEEecCCCC----CCc--eEEEEecCCccccc-cCCCCcc
Confidence 4899999999999865543322 2235679999999999999997763 443 99999665544333 33 233
Q ss_pred ccccccccc-cCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004815 575 HYDVYFSGM-PSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 653 (729)
Q Consensus 575 ~~~~~f~~~-p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 653 (729)
.+...+... ......+||+|||+|++|+||+++|.||+||+||++|++|+|.|||++|. .|+.+.+++|++.+++..|
T Consensus 575 ~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~-~~~~~~~~avv~~~~~~~g 653 (718)
T PRK08043 575 VLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLAL-GVSPDKQHATAIKSDASKG 653 (718)
T ss_pred cccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHH-hCCccceEEEEEccCCCCC
Confidence 221111100 00112349999999999999999999999999999999999999999995 8888888899998888777
Q ss_pred ceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhh-CCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 654 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK-LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 654 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~-L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+.++++++. . ..+.+++++ +++++ |+.|++|..|+++++||+|++|||||++|++++.+
T Consensus 654 -e~~v~~~~~-~----~~~~~~l~~----~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 654 -EALVLFTTD-S----ELTREKLQQ----YAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred -ceEEEEEcC-c----ccCHHHHHH----HHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence 778887642 2 345566655 46665 99999999999999999999999999999998876
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=582.97 Aligned_cols=505 Identities=19% Similarity=0.224 Sum_probs=400.6
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|+++++.+|+++|+++.+.. .+..+.+||+||+++++++|++|++.|+++|++|+++++|++++++++|||+++
T Consensus 24 ~~~~~~~~~~~~p~~~a~~~~~~~--~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 101 (538)
T TIGR03208 24 INDHFDAAVANCPDKPALTAYRDG--HGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI 101 (538)
T ss_pred HHHHHHHHHHHCCCceEEEeeccc--CCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 446688888899999999874321 122348999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|++++|++|.++.+++.+++++++++++++++... ..........+...... .++++... +...+++
T Consensus 102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 170 (538)
T TIGR03208 102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFR-GFDHAAMARELQSKLPALRQVVVIDGD----------GDDSFDR 170 (538)
T ss_pred CEEEeccCcccCHHHHHHHHHhcCCeEEEEccccc-cccHHHHHHHHhccCCcceEEEEecCC----------CCcCHHH
Confidence 99999999999999999999999999999987531 00001111111122221 22222111 1223443
Q ss_pred HHHHhhcc-ccC---ccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhh
Q 004815 337 FLERVRKL-KEN---EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMG 412 (729)
Q Consensus 337 ~~~~~~~~-~~~---~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 412 (729)
++...... .+. ........++++|+++|||||||.||||+++|+++...+......++++.+|++++.+|++|..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 250 (538)
T TIGR03208 171 VLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTG 250 (538)
T ss_pred HhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHH
Confidence 33211100 000 01112356799999999999999999999999999998888888889999999999999999888
Q ss_pred H-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHH
Q 004815 413 P-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 491 (729)
Q Consensus 413 ~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~ 491 (729)
. +.++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..+.........+++++|.+++||+++++++.++
T Consensus 251 ~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~ 329 (538)
T TIGR03208 251 FMYGLMMPLILNATAVLQD-IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVER 329 (538)
T ss_pred HHHHHHHHHHcCCEEEecC-ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHH
Confidence 6 67889999999999875 357889999999999999999999999887654333456789999999999999999998
Q ss_pred HHhccCCCCeeecccccccccccccCCccc-ccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccc
Q 004815 492 LMGRALYKPVIEYCGGTEIGGGFITGSLLQ-AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 570 (729)
Q Consensus 492 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~ 570 (729)
+.+.++ ++++|.||+||++.......... .....++|+|++|++++|+|+++++++.|+. |||+|.+..+..+ |+
T Consensus 330 ~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~--Gel~v~g~~~~~g-y~ 405 (538)
T TIGR03208 330 AWELLG-ALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGET--GRLLVRGCSNFGG-YL 405 (538)
T ss_pred HHHHcC-CeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCC--cEEEEecCccccc-cc
Confidence 887664 88999999999886544332211 1223578999999999999999999999987 9999966554332 34
Q ss_pred ccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCC
Q 004815 571 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650 (729)
Q Consensus 571 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 650 (729)
++++.++ + .+.+||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+++|++.++.
T Consensus 406 ~~~~~~~--~------~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~ 476 (538)
T TIGR03208 406 KRPHLNS--T------DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLY-QHPAVAQVAIVAYPDE 476 (538)
T ss_pred CCccccc--c------cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHh-cCcceeeEEEEeccCC
Confidence 5555443 1 13359999999999999999999999999999999999999999995 8999999999999887
Q ss_pred CCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 651 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 651 ~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
..| +.+++++++.. +. ..+..+++++ +++ +++.|++|..|+++++||+|++||++|++|+
T Consensus 477 ~~g-~~~~a~v~~~~-~~-~~~~~~l~~~----~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 477 RLG-ERACAVVVPKP-GC-TLDFAAMVAF----LKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred CCC-ceEEEEEEECC-CC-CCCHHHHHHH----HHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 777 78999999876 43 3565666654 553 7999999999999999999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-66 Score=593.52 Aligned_cols=508 Identities=18% Similarity=0.138 Sum_probs=393.5
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...+.|.++++++||++|+++.++ ++||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||++
T Consensus 38 tl~~~l~~~a~~~p~~~Ai~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~ 109 (600)
T PRK08279 38 SLGDVFEEAAARHPDRPALLFEDQ--------SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAK 109 (600)
T ss_pred cHHHHHHHHHHhCCCCcEEEeCCC--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 355778888899999999999877 999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
+|++++|+++.++.+++.+++++++++++|+++... +....+...... ..+.+...... .....|.+
T Consensus 110 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 177 (600)
T PRK08279 110 LGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELV------EAFEEARADLARPPRLWVAGGDTL------DDPEGYED 177 (600)
T ss_pred cCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHhhhhcccceEEEecCccc------cccccHHH
Confidence 999999999999999999999999999999987532 222222222222 12222211100 01223444
Q ss_pred HHHHhhccccC-ccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH-
Q 004815 337 FLERVRKLKEN-EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW- 414 (729)
Q Consensus 337 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~- 414 (729)
+.......... ........++++++|+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|.+++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~ 257 (600)
T PRK08279 178 LAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTV 257 (600)
T ss_pred HhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHH
Confidence 44322210110 1112334678999999999999999999999999999998888889999999999999999999985
Q ss_pred HHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 415 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 415 ~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
.++.+|..|+++++.+ ..++..+++.|+++++|++.++|++++.++...........++|.+ +|+.+++++++++..
T Consensus 258 ~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~ 334 (600)
T PRK08279 258 AWSSVLAAGATLALRR-KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQ 334 (600)
T ss_pred HHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHH
Confidence 4556788888888865 4678889999999999999999999999887644333345667754 578899999999988
Q ss_pred ccCCCCeeecccccccccccccCCcccccccccccCCCC----CcEE---------EEEcCCC--CccCCCCCceeEEEe
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAM----GCKL---------FILGNDG--CPIPQNVPGMGELAL 559 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~----~~~~---------~v~d~~g--~~~p~g~~giGel~v 559 (729)
.++...++|.||+||++..+... .....++|++.+ +..+ .+.|.++ .+++.|+. |||++
T Consensus 335 ~~~~~~l~~~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~--Gel~~ 408 (600)
T PRK08279 335 RFGIPRILEFYAASEGNVGFINV----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEV--GLLIG 408 (600)
T ss_pred HhCcceeeeeecccccceeeccc----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCc--eeEEE
Confidence 88766799999999988643321 123345666555 3322 3344443 35788886 99984
Q ss_pred --eccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCC
Q 004815 560 --SPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 637 (729)
Q Consensus 560 --~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p 637 (729)
.+..+.. +|++++.++..|..+++..+.+||+|||+|++++||+++++||.||+||++|+||+|.|||++|. .||
T Consensus 409 ~i~~~~~~~--GY~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~-~~p 485 (600)
T PRK08279 409 RITDRGPFD--GYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALS-GFP 485 (600)
T ss_pred EecCccccc--ccCCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHh-cCC
Confidence 3332222 23678888888877666666789999999999999999999999999999999999999999996 899
Q ss_pred CeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 638 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 638 ~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
+|.+|+|++++++..+....+++++..+ +. ..+.+++++ +|+++||+|++|..|+++++||+|++||++|++|+
T Consensus 486 ~V~~a~v~gv~~~~~~~~~~~~~vv~~~-~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~ 559 (600)
T PRK08279 486 GVEEAVVYGVEVPGTDGRAGMAAIVLAD-GA-EFDLAALAA----HLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLR 559 (600)
T ss_pred CcceEEEEEeecCCCCCccceeEEEecC-Cc-cCCHHHHHH----HHHhhCccccCCeEEEeecCCCCCcchhhhHHHHh
Confidence 9999999999876543245666666664 33 355565555 57788999999999999999999999999999999
Q ss_pred HHHHhh
Q 004815 718 KQLAQL 723 (729)
Q Consensus 718 ~~~~~~ 723 (729)
+++.+.
T Consensus 560 ~~~~~~ 565 (600)
T PRK08279 560 KEGFDP 565 (600)
T ss_pred hcCCCc
Confidence 887664
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=581.32 Aligned_cols=504 Identities=21% Similarity=0.236 Sum_probs=419.8
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|.++++.+|+++|+.+.++ .+||+||+++++++|+.|.+.|+++|++|+++++|+.++++++|||++
T Consensus 7 ~l~~~l~~~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~ 78 (521)
T PRK06187 7 TIGRILRHGARKHPDKEAVYFDGR--------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPK 78 (521)
T ss_pred CHHHHHHHHHHHCCCceEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 456778889999999999999887 899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
+|++++|+++.++.+++..+++.+++++++++.... ..+..+.+..+. ..+++...... ........+.
T Consensus 79 ~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 149 (521)
T PRK06187 79 IGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFV------PLLAAILPQLPTVRTVIVEGDGPAA---PLAPEVGEYE 149 (521)
T ss_pred cCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHH------HHHHHHhhccCCccEEEEecCcccc---ccccccccHH
Confidence 999999999999999999999999999999987532 222333333322 23333222110 1112344566
Q ss_pred HHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHH
Q 004815 336 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL 415 (729)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 415 (729)
+++..... ........++++++++|||||||.||+|.++|+++.+...+....++++++|++++.++++|..+...
T Consensus 150 ~~~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 225 (521)
T PRK06187 150 ELLAAASD----TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGL 225 (521)
T ss_pred HHhhcCCc----cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHH
Confidence 55543221 22233456789999999999999999999999999998888888899999999999999999998877
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
.+.++..|++++++++. ++..+++.|+++++|++.++|++++.|.+.......+++++|.+++|||+++.+..+++.+.
T Consensus 226 ~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~ 304 (521)
T PRK06187 226 PYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEK 304 (521)
T ss_pred HHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHH
Confidence 66799999999998774 78899999999999999999999999998776556678999999999999999999999887
Q ss_pred cCCCCeeecccccccccccccCCcccc-----cccccccCCCCCcEEEEEcCCCCccCC--CCCceeEEEeeccccCCCc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLLQA-----QSLAAFSTPAMGCKLFILGNDGCPIPQ--NVPGMGELALSPLIFGASS 568 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~~~-----~~~~~iG~p~~~~~~~v~d~~g~~~p~--g~~giGel~v~~~~~~~~~ 568 (729)
+ ++++++.||+||++........... ....++|+|++++.++|+|++++++|. |.. |||++.+.....+
T Consensus 305 ~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~--Gel~v~~~~~~~~- 380 (521)
T PRK06187 305 F-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEV--GEIIVRGPWLMQG- 380 (521)
T ss_pred h-CcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCe--eEEEEECcchhhh-
Confidence 7 6899999999999865544433222 256789999999999999999999999 876 9999966554433
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeec
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 648 (729)
|+.+++.+...|.. | ||+|||+|++++||.+++.||.|++||++|.+|+|.+||++|. .+|+|.+++|++.+
T Consensus 381 y~~~~~~~~~~~~~-----~--~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~ 452 (521)
T PRK06187 381 YWNRPEATAETIDG-----G--WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALY-GHPAVAEVAVIGVP 452 (521)
T ss_pred hcCCHHHHHHHhhC-----C--ceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHH-hCCCceEEEEEecc
Confidence 34555666555542 3 9999999999999999999999999999999999999999995 89999999999998
Q ss_pred CCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 649 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 649 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++..+ +.+++++++++ +. ..+..++++ +++++|++|++|..|+++++||+|++||++|++|++++.+
T Consensus 453 ~~~~~-~~~~~~v~~~~-~~-~~~~~~l~~----~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 453 DEKWG-ERPVAVVVLKP-GA-TLDAKELRA----FLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE 519 (521)
T ss_pred CCCcC-ceEEEEEEECC-CC-CCCHHHHHH----HHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence 87766 78999999876 43 345555555 5778899999999999999999999999999999999875
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=588.85 Aligned_cols=486 Identities=17% Similarity=0.129 Sum_probs=372.3
Q ss_pred hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
|...+.|+++++++|+++|+++.+. +.++++||+||.++++++|++|.++ ++||+|+|+++|++++++++|||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~a~~~~~~----~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~ 75 (525)
T PRK05851 2 NELAAALSDAMTASGRDLVVLDRES----GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAW 75 (525)
T ss_pred chHHHHHHHHhcCCCCceEEeCCCC----CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHH
Confidence 3345667888899999999998764 2356999999999999999999998 899999999999999999999999
Q ss_pred HcCCEEEecCCC--------CCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccC
Q 004815 257 LAGYIVVSIADS--------FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328 (729)
Q Consensus 257 ~aGa~~vpldp~--------~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 328 (729)
++|++++ ++|. ...+++.+++++++++++|+++... ..+.... .. +.+.
T Consensus 76 ~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~-~~-~~~~----------- 132 (525)
T PRK05851 76 LAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL---------ERLRAVD-SS-VTVH----------- 132 (525)
T ss_pred HcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHH---------HHHHHhh-cc-cccc-----------
Confidence 9999875 4442 2335667789999999999986421 1111100 00 0000
Q ss_pred CCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCC-CCCEEEEccCc
Q 004815 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIR-KADIVAWPTNL 407 (729)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~d~~l~~~~~ 407 (729)
.+....... .+ .+.....++++|||+|||||||.||||+++|+++++.+.+....++++ ++|++++.+|+
T Consensus 133 ----~~~~~~~~~---~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 203 (525)
T PRK05851 133 ----DLATAAHTN---RS--ASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPL 203 (525)
T ss_pred ----ccccccccc---cc--ccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCC
Confidence 000000000 00 011224678999999999999999999999999999988888888998 99999999999
Q ss_pred chhhhHHHHHHHhhcCceEEEeCCC-C--ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC-CCCCCCCCccEEEeecCC
Q 004815 408 GWMMGPWLVYASLLNGASIALYNGS-P--LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-IDGYDWSSIRCFGSTGEA 483 (729)
Q Consensus 408 ~~~~~~~~i~~~L~~G~~lvl~~~~-~--~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~-~~~~~l~sLr~v~~gGe~ 483 (729)
+|+++++.++.+++.|+++++.+.. + ++..+++.++++++|++..+|.++..+.+... ....++++||.+++||++
T Consensus 204 ~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~ 283 (525)
T PRK05851 204 YHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEP 283 (525)
T ss_pred ccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEecccc
Confidence 9999998889999999999997632 2 56679999999999988666665555543321 234457899999999999
Q ss_pred CCHhHHHHHHhcc---C--CCCeeecccccccccccccCCcc--------------cccccccccCCCCCcEEEEEcCCC
Q 004815 484 SNVDEYLWLMGRA---L--YKPVIEYCGGTEIGGGFITGSLL--------------QAQSLAAFSTPAMGCKLFILGNDG 544 (729)
Q Consensus 484 l~~~~~~~~~~~~---~--~~~l~~~YG~TE~~~~~~~~~~~--------------~~~~~~~iG~p~~~~~~~v~d~~g 544 (729)
+++++.+++.+.+ + ..+++|.||+||++..++..... ......++|+|++|++++|+|+++
T Consensus 284 l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~ 363 (525)
T PRK05851 284 VDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDG 363 (525)
T ss_pred CCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCC
Confidence 9999988877542 2 23599999999998654432211 012346899999999999999876
Q ss_pred C-ccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceee
Q 004815 545 C-PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (729)
Q Consensus 545 ~-~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri 623 (729)
. ++|.|+. |||+|++..+..+| +++++.+ .++||+|||+|+++ ||+++|+||+||+||++|+||
T Consensus 364 ~~~~~~g~~--GEl~v~g~~~~~GY-~~~~~~~-----------~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v 428 (525)
T PRK05851 364 AAGVAGREI--GEIEIRGASMMSGY-LGQAPID-----------PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNI 428 (525)
T ss_pred CccCCCCCe--EEEEEecCchhhcc-ccCCccC-----------CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEe
Confidence 4 6899986 99999655443322 3343321 12499999999997 899999999999999999999
Q ss_pred chHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCC--
Q 004815 624 SSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLP-- 701 (729)
Q Consensus 624 ~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~-- 701 (729)
+|.|||++|. .||+|.+|+|++++++..+ +.+.++++... . ..+.++++++++++|...+ +++|..+++++
T Consensus 429 ~p~eIE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~~~v~~~~-~--~~~~~~~~~~~~~~l~~~l--~~~P~~~~~v~~~ 501 (525)
T PRK05851 429 FPTEIERVAA-QVRGVREGAVVAVGTGEGS-ARPGLVIAAEF-R--GPDEAGARSEVVQRVASEC--GVVPSDVVFVAPG 501 (525)
T ss_pred CHHHHHHHHH-hCCCcccceEEEEEecCCC-CceeEEEEEEe-c--CcchHHHHHHHHHHHHHHh--CCCccEEEEECCC
Confidence 9999999995 9999999999999887776 56666666542 1 2345667777777776665 38999999998
Q ss_pred CCCCCCCChhhHHHHHHHHHh
Q 004815 702 SLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 702 ~lP~t~~GKidR~~L~~~~~~ 722 (729)
+||+|++|||+|++|++.+++
T Consensus 502 ~lP~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 502 SLPRTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred CcCcCcchHHHHHHHHHHHHh
Confidence 899999999999999998765
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=578.70 Aligned_cols=492 Identities=16% Similarity=0.163 Sum_probs=404.7
Q ss_pred hhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Q 004815 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (729)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa 260 (729)
+.|.++++.+|+++|+.+.+. ++||+||.++++++|+.|.+.|+++|++|+|+++|+.++++++|||+++|+
T Consensus 4 ~~l~~~a~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~ 75 (502)
T TIGR01734 4 EAIQAFAETYPQTIAYRYQGQ--------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGH 75 (502)
T ss_pred HHHHHHHHHCCCceEEEcCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCC
Confidence 456777888999999998776 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHH
Q 004815 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 340 (729)
Q Consensus 261 ~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 340 (729)
+++|+++.++.+++.++++..+++.+++++....... ....+.+. ...+....
T Consensus 76 ~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~------------~~~~~~~~---------------~~~~~~~~ 128 (502)
T TIGR01734 76 AYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV------------GTQIITLS---------------ALEQAETS 128 (502)
T ss_pred EEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc------------CCceEEch---------------Hhhhhhhh
Confidence 9999999999999999999999999999875321000 00111110 00111111
Q ss_pred hhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHh
Q 004815 341 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 420 (729)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L 420 (729)
. .+ ........++++++++|||||||.||||+++|+++...+.+....+++..+++++...|++|+.+++.++.++
T Consensus 129 ~---~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l 204 (502)
T TIGR01734 129 G---GP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCL 204 (502)
T ss_pred c---CC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHH
Confidence 0 00 1111234678999999999999999999999999999888888888999999999999999999998899999
Q ss_pred hcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCC
Q 004815 421 LNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 498 (729)
Q Consensus 421 ~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~ 498 (729)
..|+++++.+.. .++..+++.++++++|.+..+|++++.++.........+++++.++++|++++.+..+++.+.+++
T Consensus 205 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~ 284 (502)
T TIGR01734 205 ASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPK 284 (502)
T ss_pred HCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCC
Confidence 999999998753 367789999999999999999999988776544445568899999999999999999999988888
Q ss_pred CCeeecccccccccccccCCc----ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccc
Q 004815 499 KPVIEYCGGTEIGGGFITGSL----LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574 (729)
Q Consensus 499 ~~l~~~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~ 574 (729)
+++++.||+||++..++.... .......++|.|.+|++++|+|++++++|.|+. |||++.+..+..+ |+++++
T Consensus 285 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~g~~~~~g-y~~~~~ 361 (502)
T TIGR01734 285 ATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEK--GEIVIVGPSVSKG-YLNNPE 361 (502)
T ss_pred cEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCe--eEEEEcccccccc-ccCCcc
Confidence 899999999998764433211 112234579999999999999999999999986 9999965544332 355677
Q ss_pred ccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 575 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
.+...|... .|.+||+|||+|+++++ +++++||.||+||++|++|+|.|||++|. .+|+|.+|+|+++.++....
T Consensus 362 ~~~~~~~~~---~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~-~~~~v~~~~vv~~~~~~~~~ 436 (502)
T TIGR01734 362 KTAEAFFSH---EGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLR-QSSYIESAVVVPKYNKDHKV 436 (502)
T ss_pred cchHhheeC---CCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHH-cCCCccEEEEEEEEcCCCCc
Confidence 776666432 36679999999999976 99999999999999999999999999995 99999999999976333222
Q ss_pred eeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHH
Q 004815 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~ 721 (729)
+.+++++++.+ .. .....++.+.+++.++++||+|++|..++++++||+|++||++|++|++++.
T Consensus 437 ~~~~~~v~~~~-~~-~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 437 EYLIAAIVPET-ED-FEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred eEEEEEEEecc-cc-cccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 78999999876 32 2334456677888899999999999999999999999999999999999875
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=581.67 Aligned_cols=497 Identities=20% Similarity=0.203 Sum_probs=401.6
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|+++++++||++|+++.+. .+||+||.++++++|..|.+.|+++|++|+++++|++++++++|||+++
T Consensus 23 l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~ 94 (542)
T PRK06155 23 LPAMLARQAERYPDRPLLVFGGT--------RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWL 94 (542)
T ss_pred HHHHHHHHHHHCCCCeEEEeCCc--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 45678889999999999998876 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhc-C-CcEEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ-A-PLAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|++++|++|.++.+++..++++++++++++++.... ......... . ...+.+..... . . ....|..
T Consensus 95 G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~--~---~~~~~~~ 162 (542)
T PRK06155 95 GAIAVPINTALRGPQLEHILRNSGARLLVVEAALLA------ALEAADPGDLPLPAVWLLDAPAS-V--S---VPAGWST 162 (542)
T ss_pred CCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHH------HHHHhcccccCcceEEEecCccc-c--c---cccccch
Confidence 999999999999999999999999999999875321 111111111 1 12222221110 0 0 0011111
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 416 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i 416 (729)
... .. ...........++++|+|+|||||||.||||+++|+++..........+++++++++++..|++|..++..+
T Consensus 163 ~~~-~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~ 239 (542)
T PRK06155 163 APL-PP--LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAF 239 (542)
T ss_pred hhh-cc--cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHH
Confidence 100 00 001111233467899999999999999999999999998887777788899999999999999999999888
Q ss_pred HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
+.++..|+++++.+. .++..+++.|+++++|.+.++|+++..|.+.........+++|.++.|| +++.+.+++.+.+
T Consensus 240 ~~~l~~G~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~ 316 (542)
T PRK06155 240 FQALLAGATYVLEPR-FSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERF 316 (542)
T ss_pred HHHHHcCceEEeeCC-CCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHc
Confidence 999999999998764 5788999999999999999999999999887655555677899877665 5678888887766
Q ss_pred CCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccc---cCCCcccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLI---FGASSTLLNA 573 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~---~~~~~~~~~~ 573 (729)
+ .+++|.||+||++..+.... .....+++|.|+++++++|+|++++++|.|.. |||++++.. +..+ |++++
T Consensus 317 ~-~~v~~~YG~tE~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gei~v~~~~~~~~~~G-Y~~~~ 390 (542)
T PRK06155 317 G-VDLLDGYGSTETNFVIAVTH--GSQRPGSMGRLAPGFEARVVDEHDQELPDGEP--GELLLRADEPFAFATG-YFGMP 390 (542)
T ss_pred C-CCEEeeecccccCccccCCC--CCCCCCCcCccCCCceEEEECCCCCCCCCCCc--eEEEEecCCccccchh-hcCCH
Confidence 4 78999999999987654332 23355789999999999999999999999986 999996542 2222 35566
Q ss_pred cccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004815 574 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 653 (729)
Q Consensus 574 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 653 (729)
+.++..|. ..||+|||+|++++||+++++||.||+||++|.+|+|.|||++|. +||+|.+|+|++++++..+
T Consensus 391 ~~~~~~~~-------~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~v~~~~~~ 462 (542)
T PRK06155 391 EKTVEAWR-------NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLL-SHPAVAAAAVFPVPSELGE 462 (542)
T ss_pred HHHHHhhc-------CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeecccccC
Confidence 66666663 139999999999999999999999999999999999999999995 9999999999999987766
Q ss_pred ceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 654 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 654 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+.++++++++. +. ..+..++++ +++++|++|++|..|+++++||+|++||++|++|++++..
T Consensus 463 -~~~~~~v~~~~-~~-~~~~~~~~~----~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~~ 524 (542)
T PRK06155 463 -DEVMAAVVLRD-GT-ALEPVALVR----HCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGVT 524 (542)
T ss_pred -ceEEEEEEECC-CC-CCCHHHHHH----HHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhccC
Confidence 78888888876 44 455566655 5777899999999999999999999999999999998753
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=578.27 Aligned_cols=490 Identities=19% Similarity=0.193 Sum_probs=403.8
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
.++|.++++++|+++|+++.+. .+||.||.++++++|.+|.+.|+++|++|+++++|++++++++|||+++|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~~--------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G 76 (497)
T PRK06145 5 SASIAFHARRTPDRAALVYRDQ--------EISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLG 76 (497)
T ss_pred HHHHHHHHHHCCCceEEEECCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 3567888899999999999776 89999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 339 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 339 (729)
++++|+++.++.+++.+++++++++++++++...... . .....+.+.... ...+..+..
T Consensus 77 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~----------~-~~~~~~~~~~~~----------~~~~~~~~~ 135 (497)
T PRK06145 77 AVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIV----------A-LETPKIVIDAAA----------QADSRRLAQ 135 (497)
T ss_pred cEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhh----------h-cccceEEecCcc----------cchhHHHhc
Confidence 9999999999999999999999999999987532100 0 011112221100 001111110
Q ss_pred HhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HHHHH
Q 004815 340 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYA 418 (729)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~ 418 (729)
.. ..........++++++++|||||||.||||+++|+++..........+++..+|+++...|+.|..++ +..+.
T Consensus 136 -~~---~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 211 (497)
T PRK06145 136 -GG---LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIA 211 (497)
T ss_pred -cC---CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHH
Confidence 00 00111223567899999999999999999999999998777666677899999999999999998887 44578
Q ss_pred HhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCC
Q 004815 419 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 498 (729)
Q Consensus 419 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~ 498 (729)
++..|+++++.+. .++..+++.++++++|++.++|+++..++........+++++|.+++||++++.++++++.+.+++
T Consensus 212 ~l~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~ 290 (497)
T PRK06145 212 VLWVGGTLRIHRE-FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTR 290 (497)
T ss_pred HHhccCEEEECCc-CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCC
Confidence 8999999988764 678899999999999999999999999987765555667899999999999999999999888888
Q ss_pred CCeeecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccc
Q 004815 499 KPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYD 577 (729)
Q Consensus 499 ~~l~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~ 577 (729)
.++++.||+||++..++..... .....+++|+|+++++++++|++++++|.|+. |||++.+..+..+ |+++++.++
T Consensus 291 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~G-y~~~~~~~~ 367 (497)
T PRK06145 291 ARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMK--GEICMRGPKVTKG-YWKDPEKTA 367 (497)
T ss_pred CceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCc--eEEEEECcchhhh-hcCChHHHH
Confidence 8999999999998754433221 22245689999999999999999999999986 9999966544332 355677777
Q ss_pred cccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeE
Q 004815 578 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 657 (729)
Q Consensus 578 ~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l 657 (729)
..|.. .||+|||+|+++.||+++++||+||+||++|++|+|.|||++|. .+|+|.+++|++.+++..+ +.+
T Consensus 368 ~~~~~-------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~ 438 (497)
T PRK06145 368 EAFYG-------DWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIY-ELPEVAEAAVIGVHDDRWG-ERI 438 (497)
T ss_pred HHHhC-------CCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEecCCCccC-ceE
Confidence 76642 29999999999999999999999999999999999999999995 8999999999999888777 789
Q ss_pred EEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHH
Q 004815 658 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721 (729)
Q Consensus 658 ~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~ 721 (729)
++++++.+ +. ..+.+++++ +++++|++|++|..|+++++||+|++||++|++|++++.
T Consensus 439 ~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 439 TAVVVLNP-GA-TLTLEALDR----HCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred EEEEEECC-CC-CCCHHHHHH----HHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 99999876 33 345555555 577889999999999999999999999999999999875
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=580.27 Aligned_cols=498 Identities=18% Similarity=0.188 Sum_probs=400.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++|+++|+++.+. ++||+||.++++++|..|.+.|+++|++|+++++|++++++++|||+++
T Consensus 25 l~~~~~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 96 (527)
T TIGR02275 25 LTDILRDQAARYPDAIAIICGNR--------QWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKL 96 (527)
T ss_pred HHHHHHHHHHHCCCceEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHc
Confidence 44667788889999999998766 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
|++++++++.++.+++.++++.+++++++++..... .........+....+. ..+.+... .. ........
T Consensus 97 G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~ 167 (527)
T TIGR02275 97 GIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSL-FDYDAFARQLQSKLPTLRNIIVAGQ-TR-------VEAELFLW 167 (527)
T ss_pred CeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccc-cchHHHHHHHHhhCCcceEEEEecC-CC-------CcchhhHH
Confidence 999999999999999999999999999999864210 0000011111111211 11111110 00 00111111
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH--H
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW--L 415 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~ 415 (729)
+... ....+.....++++|+++|||||||.||||+++|+++...+......+.++.+|+++..+|++|.+++. .
T Consensus 168 ~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~ 243 (527)
T TIGR02275 168 LESP----AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPG 243 (527)
T ss_pred hhCc----CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHH
Confidence 1111 111122345678999999999999999999999999998888887888999999999999999988874 5
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
++.++..|+++++.+. .++..+++.|+++++|++..+|++++.|.+.......+++++|.+++||++++.++.+++.+.
T Consensus 244 ~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 322 (527)
T TIGR02275 244 ALGVFYAGGCVVLAPD-PSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAV 322 (527)
T ss_pred HHHHHhcCCeEEECCC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999988653 578889999999999999999999999987765556678899999999999999999998876
Q ss_pred cCCCCeeecccccccccccccCCcccccccccccCCC-CCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~ 574 (729)
++ .++++.||+||+++..............++|+|+ ++..++|+|++|++++.|+. |||++.+.....+ |+++++
T Consensus 323 ~g-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~--Gei~v~g~~~~~g-Y~~~~~ 398 (527)
T TIGR02275 323 FG-CQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGET--GMLLTRGPYTFRG-YYKAPE 398 (527)
T ss_pred hC-CeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCc--eEEEecCCccchh-hcCChh
Confidence 64 8899999999976543322222223346889999 48999999999999999987 9999965554433 356777
Q ss_pred ccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 575 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
.+...|..+ +||+|||+|++++||+++++||.||+||++|.+|+|.|||++|. .||+|.+|+|++.++...+
T Consensus 399 ~~~~~~~~d------g~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~~- 470 (527)
T TIGR02275 399 HNAAAFDAE------GFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLL-AHPAVHDAALVSMPDELLG- 470 (527)
T ss_pred HhHhhcCcC------CCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHH-hCCCceEEEEEecCCcccc-
Confidence 777767543 29999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred eeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
+.+++++++++ +. .+..++++ ++++ ++|+|++|..|+++++||+|++||++|++|+
T Consensus 471 ~~~~a~vv~~~-~~--~~~~~l~~----~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 471 EKSCAFIVVRD-PA--LKAAQLRR----FLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred cEEEEEEEECC-CC--CCHHHHHH----HHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 78999999876 32 45556555 5665 4999999999999999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=579.49 Aligned_cols=508 Identities=21% Similarity=0.198 Sum_probs=415.0
Q ss_pred hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
+...++|.++++++||++|+++.+. .+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+
T Consensus 11 ~~l~~~l~~~a~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~ 82 (523)
T PRK08316 11 QTIGDILRRSARRYPDKTALVFGDR--------SWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACA 82 (523)
T ss_pred CCHHHHHHHHHHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 4466778888889999999999876 99999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHH
Q 004815 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 257 ~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
++|++++|+++.++.+++..+++.++++++++++... ....+..+......+.+..... ..........+.+
T Consensus 83 ~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 154 (523)
T PRK08316 83 RAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALA------PTAEAALALLPVDTLILSLVLG--GREAPGGWLDFAD 154 (523)
T ss_pred hcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchH------HHHHHHhhhcCccceeeeeccc--ccccccchhhHHH
Confidence 9999999999999999999999999999999987532 1111111111111111111000 0001112233444
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WL 415 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~ 415 (729)
+..... ..........+++++++|||||||.||+|.++|++++.........+++.++|+++...|+.|..+. ..
T Consensus 155 ~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~ 230 (523)
T PRK08316 155 WAEAGS----VAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVF 230 (523)
T ss_pred HHhcCC----CccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHH
Confidence 332211 1112344567899999999999999999999999999888877788899999999999999999887 44
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+.++.+..+++.+.
T Consensus 231 ~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~ 309 (523)
T PRK08316 231 LGPYLYVGATNVILDA-PDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRER 309 (523)
T ss_pred HHHHHhcCceEEEecC-CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHH
Confidence 6677889999999864 578899999999999999999999999988765556678899999999999999999999988
Q ss_pred cCCCCeeecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~ 574 (729)
+++.++++.||+||++......... .....+++|+|+++++++|+|++|++++.|+. |||++.+.....+ |+++++
T Consensus 310 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gei~v~~~~~~~~-y~~~~~ 386 (523)
T PRK08316 310 LPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEV--GEIVHRSPQLMLG-YWDDPE 386 (523)
T ss_pred cCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCc--ceEEEECCchhhh-hcCCHH
Confidence 8788999999999998755443322 22345789999999999999999999999987 9999966544332 355666
Q ss_pred ccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 575 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
.++..|. .+||+|||+|++++||.++++||.||+||++|.+|+|.+||+.| ..+|+|.+++|++.+++..+
T Consensus 387 ~~~~~~~-------~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l-~~~~~v~~~~v~~~~~~~~~- 457 (523)
T PRK08316 387 KTAEAFR-------GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEAL-YTHPAVAEVAVIGLPDPKWI- 457 (523)
T ss_pred HHHHHhh-------CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHH-HhCCChheEeEecccCcccC-
Confidence 6666663 13999999999999999999999999999999999999999999 49999999999999988777
Q ss_pred eeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
+.++++++.++ +. ..+.+++.+ +++++|++|++|..+++++++|+|++||++|++|++++.+.
T Consensus 458 ~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 520 (523)
T PRK08316 458 EAVTAVVVPKA-GA-TVTEDELIA----HCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGA 520 (523)
T ss_pred CeEEEEEEECC-CC-CCCHHHHHH----HHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence 78999999876 43 244444444 67788999999999999999999999999999999999764
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-66 Score=594.10 Aligned_cols=504 Identities=19% Similarity=0.189 Sum_probs=386.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCC-CCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGD-GGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
..++++++++++|+++|+++.+..+ .++..+.+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||++
T Consensus 36 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~~~ 114 (612)
T PRK12476 36 LISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAAIK 114 (612)
T ss_pred HHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHHHH
Confidence 3456788888899999999854210 112345899999999999999999986 99999999999999999999999999
Q ss_pred cCCEEEec-CCCCC--HHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC----CcEEEEcCCCCCcccccCCC
Q 004815 258 AGYIVVSI-ADSFA--SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA----PLAIVIPAKGSSFSMKLRDG 330 (729)
Q Consensus 258 aGa~~vpl-dp~~~--~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~ 330 (729)
+|++++|+ ++.++ .+++.+++++++++++|+++... +....+..... ..++.+....
T Consensus 115 aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~---------- 178 (612)
T PRK12476 115 AGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAA------EAVEGFLRNLPRLRRPRVIAIDAIP---------- 178 (612)
T ss_pred cCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHH------HHHHHHHhhcccccCceEEEecccc----------
Confidence 99999999 67777 78999999999999999987532 11111111111 1122221100
Q ss_pred CcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCC-CCCCCEEEEccCcch
Q 004815 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD-IRKADIVAWPTNLGW 409 (729)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~~ 409 (729)
.. ...........+++++||+|||||||.||||+++|+++.+.+......++ +.+++++++.+|+.|
T Consensus 179 --------~~----~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h 246 (612)
T PRK12476 179 --------DS----AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYH 246 (612)
T ss_pred --------cc----ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCccc
Confidence 00 00011122346789999999999999999999999999887777666777 788999999999999
Q ss_pred hhhHHHHHHHhhcCceEEEeCCC-C--ChhhHHHHHH--HcCCcEEEecHHHHHHHHhcCC----CCCCCCCCccEEEee
Q 004815 410 MMGPWLVYASLLNGASIALYNGS-P--LGSGFAKFVQ--DAKVTMLGVVPSIVRTWKSTNC----IDGYDWSSIRCFGST 480 (729)
Q Consensus 410 ~~~~~~i~~~L~~G~~lvl~~~~-~--~~~~l~~~i~--~~~vt~~~~~P~~l~~l~~~~~----~~~~~l~sLr~v~~g 480 (729)
+.++..++.+++.|+++++.... . ++..+++.++ ++++|++..+|+++..++.... ....++++|| +++|
T Consensus 247 ~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~g 325 (612)
T PRK12476 247 DMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIG 325 (612)
T ss_pred ccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEec
Confidence 99987666666677777766532 2 6778999995 4899999999999887765321 1234688999 9999
Q ss_pred cCCCCHhHHHHHHhccC-----CCCeeecccccccccccccCCcccc--------------------------ccccccc
Q 004815 481 GEASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQA--------------------------QSLAAFS 529 (729)
Q Consensus 481 Ge~l~~~~~~~~~~~~~-----~~~l~~~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG 529 (729)
|+++++++.+++.+.++ ...+++.||+||++..++....... ...+++|
T Consensus 326 g~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G 405 (612)
T PRK12476 326 SEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCG 405 (612)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCC
Confidence 99999999998887652 2358999999998765433211100 0124789
Q ss_pred CCCCCcEEEEEcCC-CCccCCCCCceeEEEeeccccCCCccccccccccccccccc------------CCCCceeEEeCc
Q 004815 530 TPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP------------SRNGQILRRHGD 596 (729)
Q Consensus 530 ~p~~~~~~~v~d~~-g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p------------~~~g~~~y~TGD 596 (729)
+|++|++++|+|++ |+++|.|++ |||++.+..+.. .|+++++.|++.|...+ ..++.+||+|||
T Consensus 406 ~~~~g~~v~ivd~~~g~~~~~g~~--GEl~v~g~~v~~-GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGD 482 (612)
T PRK12476 406 QVARSQWAVIVDPDTGAELPDGEV--GEIWLHGDNIGR-GYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGD 482 (612)
T ss_pred CcCCCCEEEEEeCCCCcCCCCCCE--EEEEEcCCcccc-cccCChHHHHHHHhhhhccccccccccccccCCCCeeeccc
Confidence 99999999999988 999999996 999996655443 34678888888885311 012346999999
Q ss_pred eEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeee--eEEEeecCCCCCceeEEEEEEecCCCCCCCChH
Q 004815 597 VFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLE--TAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLN 674 (729)
Q Consensus 597 l~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~--a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~ 674 (729)
+|+++ ||+|+|+||+||+||++|++|+|.|||++|...||.|.+ ++|++++++. + +.++++++.++ +....+.+
T Consensus 483 lg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~-~~~~~~v~~~~-~~~~~~~~ 558 (612)
T PRK12476 483 LGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-N-ERLVIVAERAA-GTSRADPA 558 (612)
T ss_pred cceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-c-ceEEEEEEecC-CcccccHH
Confidence 99985 999999999999999999999999999999535899999 6777887766 5 78999999876 43125667
Q ss_pred HHHHHHHHHHHhhCCCCCc-cceEEeCC--CCCCCCCChhhHHHHHHHHHh
Q 004815 675 QLRMSFNSAVQKKLNPLFK-VSHVVPLP--SLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 675 ~l~~~l~~~l~~~L~~~~~-P~~i~~v~--~lP~t~~GKidR~~L~~~~~~ 722 (729)
++.+++++++... |++ |..+++++ +||+|++|||+|++|++++.+
T Consensus 559 ~l~~~~~~~l~~~---~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 559 PAIDAIRAAVSRR---HGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLD 606 (612)
T ss_pred HHHHHHHHHHHHh---hCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence 7888777776654 566 57777776 699999999999999998865
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-65 Score=579.91 Aligned_cols=510 Identities=18% Similarity=0.202 Sum_probs=400.4
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|+.+++++|+++++.+... +..+.+||.||+++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~ 86 (539)
T PRK07008 11 LISSLIAHAARHAGDTEIVSRRVE----GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSG 86 (539)
T ss_pred CHHHHHHHHHhhCCCceEEEeecc----CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 355678878888899888876322 1234899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCc--EEEEcCCCCCcccccCCCCcCHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL--AIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
+|++++|++|.++.+++.++++++++++++++.... +....+....... .+.+.... ..... .....+++
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 158 (539)
T PRK07008 87 SGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFL------PLVDALAPQCPNVKGWVAMTDAA-HLPAG-STPLLCYE 158 (539)
T ss_pred cCcEEeecccccCHHHHHHHHhccCCcEEEEcchhH------HHHHHHHhhCCCceEEEEEccCC-ccccC-CcccccHH
Confidence 999999999999999999999999999999987532 1122222222221 12222111 10000 01234566
Q ss_pred HHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHH--HHHHhhCCCCCCCEEEEccCcchhhhH
Q 004815 336 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAA--ADAWCHMDIRKADIVAWPTNLGWMMGP 413 (729)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~ 413 (729)
++...... ........++++++++|||||||.||||+++|++++... ......+++.++|+++...|++|..+.
T Consensus 159 ~l~~~~~~----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 234 (539)
T PRK07008 159 TLVGAQDG----DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAW 234 (539)
T ss_pred HHhcccCC----CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhH
Confidence 55432211 111224567889999999999999999999999986433 223346788899999999999888776
Q ss_pred HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHH
Q 004815 414 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 493 (729)
Q Consensus 414 ~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~ 493 (729)
..++.++..|+++++.+...++..++++++++++|++.++|+++..|++.......++++||.+++||+++++.+.+++.
T Consensus 235 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~ 314 (539)
T PRK07008 235 GLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFE 314 (539)
T ss_pred HHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHH
Confidence 66678899999999987667888999999999999999999999999887655556789999999999999999999988
Q ss_pred hccCCCCeeecccccccccccccCCcc------cc----cccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccc
Q 004815 494 GRALYKPVIEYCGGTEIGGGFITGSLL------QA----QSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLI 563 (729)
Q Consensus 494 ~~~~~~~l~~~YG~TE~~~~~~~~~~~------~~----~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~ 563 (729)
+.++ .++++.||+||++..++..... .. ....++|+|++|++++|+|++++++|.+...+|||++++..
T Consensus 315 ~~~~-~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~ 393 (539)
T PRK07008 315 DEYG-VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPW 393 (539)
T ss_pred HHhC-CceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCc
Confidence 7764 8999999999998644332211 00 11357899999999999999999998653224999997665
Q ss_pred cCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeE
Q 004815 564 FGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETA 643 (729)
Q Consensus 564 ~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~ 643 (729)
+..+ |+++++ . |...| ||+|||+|++++||+++++||+||+||++|++|+|.|||++|. .||.|.+++
T Consensus 394 ~~~g-y~~~~~---~-----~~~~g--~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~v~~~~ 461 (539)
T PRK07008 394 VIDR-YFRGDA---S-----PLVDG--WFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAV-AHPAVAEAA 461 (539)
T ss_pred cchh-hcCChh---h-----hhcCC--CcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHH-hCCceeEEE
Confidence 5432 233431 1 22223 9999999999999999999999999999999999999999995 999999999
Q ss_pred EEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 644 AIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 644 Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
|+++++...+ +.++++|+..+ +. ..+.+++++ +++++|++|++|..|+++++||+|++||++|++|++++.+.
T Consensus 462 v~~~~~~~~~-~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~ 534 (539)
T PRK07008 462 CIACAHPKWD-ERPLLVVVKRP-GA-EVTREELLA----FYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDY 534 (539)
T ss_pred EEecCCchhc-cceEEEEEeCC-CC-ccCHHHHHH----HHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence 9999987766 78888888776 43 345455554 67788999999999999999999999999999999998874
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-65 Score=573.97 Aligned_cols=495 Identities=21% Similarity=0.228 Sum_probs=403.5
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|.+++ .+|+++|+.+.+. +.+||.||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 5 l~~~~~~~~-~~~~~~a~~~~~~-------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~ 76 (504)
T PRK07514 5 LFDALRAAF-ADRDAPFIETPDG-------LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRA 76 (504)
T ss_pred HHHHHHHHh-hCCCCeEEEeCCC-------CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 345566666 8999999988544 28999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCc-EEEEcCCCCCcccccCCCCcCHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL-AIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
|++++|+++.++.+++..+++.++++++++++... .....+....... .+.+... ....+.+.
T Consensus 77 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 140 (504)
T PRK07514 77 GAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANF------AWLSKIAAAAGAPHVETLDAD----------GTGSLLEA 140 (504)
T ss_pred CcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchh------HHHHHhhhccCCceEEEecCC----------CcccHHHh
Confidence 99999999999999999999999999999987532 1122222211111 2222111 11112222
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HHH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLV 416 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i 416 (729)
... .+.........+++++||+|||||||.||||+++|+++...+......+++.++|++++..|+.|..++ +.+
T Consensus 141 ~~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 216 (504)
T PRK07514 141 AAA----APDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVAT 216 (504)
T ss_pred hhh----cCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHH
Confidence 211 111222334568899999999999999999999999999988887788899999999999999998887 568
Q ss_pred HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
+.+++.|+++++.+. .++..+++.+ +++|++..+|+++..+++........++++|.+++||+++++++++++.+.+
T Consensus 217 ~~~l~~G~~~~~~~~-~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~ 293 (504)
T PRK07514 217 NVALLAGASMIFLPK-FDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT 293 (504)
T ss_pred HHHHhcCcEEEECCC-CCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHh
Confidence 899999999999865 5778888888 3799999999999999877655556688999999999999999999988776
Q ss_pred CCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCcccccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 575 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~ 575 (729)
+ .++++.||+||++...... ........++|.|++|++++|+| ++++++|.|+. |||+|.+..+..+ |+++++.
T Consensus 294 ~-~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~--Gel~i~~~~~~~g-y~~~~~~ 368 (504)
T PRK07514 294 G-HAILERYGMTETNMNTSNP-YDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEI--GMIEVKGPNVFKG-YWRMPEK 368 (504)
T ss_pred C-CcceeecccccccccccCC-ccccccCcccccCCCCcEEEEEECCCCCCCCCCCc--eEEEEecCCcccc-ccCCchh
Confidence 4 7899999999987644322 22223456899999999999999 88999999987 9999966554433 3567777
Q ss_pred cccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004815 576 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 655 (729)
Q Consensus 576 ~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 655 (729)
+++.|..++ ||+|||+|++++||+++++||+||+||++|++|+|.|||++|. .+++|.+++|+++++...+ +
T Consensus 369 ~~~~~~~~~------~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~ 440 (504)
T PRK07514 369 TAEEFRADG------FFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEID-ELPGVVESAVIGVPHPDFG-E 440 (504)
T ss_pred hhhhcccCC------CeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEeCCCCCcC-c
Confidence 777776432 9999999999999999999999999999999999999999995 8999999999999887776 7
Q ss_pred eEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 656 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 656 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
.++++++..+ +. ..+.+++++ .++++|++|++|..|++++++|+|++||++|++|++++.++
T Consensus 441 ~~~~~~~~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~ 502 (504)
T PRK07514 441 GVTAVVVPKP-GA-ALDEAAILA----ALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL 502 (504)
T ss_pred eEEEEEEECC-CC-CCCHHHHHH----HHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence 8999999876 33 345555544 67788999999999999999999999999999999998763
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=583.65 Aligned_cols=519 Identities=16% Similarity=0.155 Sum_probs=406.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
..++|..++..+|+++|+++.+. ..+.+||+||.++++++|++|.+ .|+++||+|+++++|+++++++++||++
T Consensus 12 ~~~~l~~~a~~~~~~~a~~~~~~-----~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~ 86 (576)
T PRK05620 12 LTRILEYGSTVHGDTTVTTWGGA-----EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVAC 86 (576)
T ss_pred HHHHHHHHHHhCCCceEEEEcCC-----ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 34667788889999999998543 23589999999999999999986 7999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCc---ccccCCCCc
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSF---SMKLRDGDI 332 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~---~~~~~~~~~ 332 (729)
+|++++|++|.++.+++.+++++++++++|+++... .....+...... .++++....... .........
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (576)
T PRK05620 87 MGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLA------EQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVY 160 (576)
T ss_pred cCCEEeecccccCHHHHHHHHhccCCcEEEEChhhH------HHHHHHHhhCccccEEEEecCcccccchhccccccccc
Confidence 999999999999999999999999999999987432 122222222222 122222111100 000111234
Q ss_pred CHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHH--HhhCCCCCCCEEEEccCcchh
Q 004815 333 SWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA--WCHMDIRKADIVAWPTNLGWM 410 (729)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~ 410 (729)
+|.++..... .........++++++++|||||||.||||+++|+++....... ...+++..+|++++.+|+.|+
T Consensus 161 ~~~~l~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~ 236 (576)
T PRK05620 161 SYEALLDGRS----TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHV 236 (576)
T ss_pred cHHHHhhcCC----CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHh
Confidence 5777765321 1122234567899999999999999999999999986544332 245788999999999999999
Q ss_pred hhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHH
Q 004815 411 MGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYL 490 (729)
Q Consensus 411 ~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~ 490 (729)
++....+.++..|+++++.....++..+++.|+++++|++..+|+++..++........+..+||.+++||+++++.+.+
T Consensus 237 ~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~ 316 (576)
T PRK05620 237 LSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIK 316 (576)
T ss_pred hhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHH
Confidence 99888889999999999987666888999999999999999999999988765333333456899999999999999998
Q ss_pred HHHhccCCCCeeecccccccccccccCCccc-------ccccccccCCCCCcEEEEEcCCCCccC--CCCCceeEEEeec
Q 004815 491 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQ-------AQSLAAFSTPAMGCKLFILGNDGCPIP--QNVPGMGELALSP 561 (729)
Q Consensus 491 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~iG~p~~~~~~~v~d~~g~~~p--~g~~giGel~v~~ 561 (729)
++.+.++ +++++.||+||++..+....... .....++|++.++++++|+|+ |+.++ .|.. |||++.+
T Consensus 317 ~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~~--Gel~v~g 392 (576)
T PRK05620 317 AWEERYG-VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRNE--GEIQVRG 392 (576)
T ss_pred HHHHHhC-CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCCCCc--eEEEEEc
Confidence 8877664 78999999999986544332211 012347899999999999998 77765 3554 9999966
Q ss_pred cccCCCccccccccc----ccccccccCC------CCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHH
Q 004815 562 LIFGASSTLLNANHY----DVYFSGMPSR------NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERI 631 (729)
Q Consensus 562 ~~~~~~~~~~~~~~~----~~~f~~~p~~------~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~ 631 (729)
..+..+ |+++++.+ ...|..+++. ..++||+|||+|++++||+++++||.||+||++|.+|+|.|||++
T Consensus 393 ~~~~~g-Y~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~ 471 (576)
T PRK05620 393 NWVTAS-YYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENY 471 (576)
T ss_pred Cccccc-ccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHH
Confidence 554433 35566666 5566544421 123599999999999999999999999999999999999999999
Q ss_pred HhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChh
Q 004815 632 CNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKV 711 (729)
Q Consensus 632 L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi 711 (729)
|+ +||.|.+|+|++.+++..| +.++++++..+ +. ..+ +...+.++++++++||+|++|+.|+++++||+|++||+
T Consensus 472 l~-~~p~v~~~~vv~~~~~~~g-~~~~a~v~~~~-~~-~~~-~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv 546 (576)
T PRK05620 472 IM-AAPEVVECAVIGYPDDKWG-ERPLAVTVLAP-GI-EPT-RETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKF 546 (576)
T ss_pred Hh-cCCCceEEEEEeccCCCcC-ceeEEEEEecC-CC-Ccc-cccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccC
Confidence 95 8999999999999998877 78888888876 43 111 11233455578889999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 004815 712 MRRVLRKQLAQ 722 (729)
Q Consensus 712 dR~~L~~~~~~ 722 (729)
+|++|++++.+
T Consensus 547 ~r~~L~~~~~~ 557 (576)
T PRK05620 547 DKKDLRQHLAD 557 (576)
T ss_pred cHHHHHHHHhc
Confidence 99999999885
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-65 Score=579.06 Aligned_cols=507 Identities=20% Similarity=0.205 Sum_probs=410.3
Q ss_pred CcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Q 004815 174 AFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL 253 (729)
Q Consensus 174 ~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~L 253 (729)
.+.|..+. ++++++++|+++|+++.+. .+||.||.++++++|++|.+.|+++||+|+|+++|+++++++++
T Consensus 15 ~~~n~~~~-~~~~a~~~~~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~ 85 (542)
T PRK07786 15 RRQNWVNQ-LARHALMQPDAPALRFLGN--------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL 85 (542)
T ss_pred cccCHHHH-HHHHHHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 44566554 6667888999999999877 89999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCC
Q 004815 254 AIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGD 331 (729)
Q Consensus 254 A~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~ 331 (729)
||+++|++++|+++.++.+++.+++++++++++++++... +.........+. ..+++.... ..+.
T Consensus 86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 152 (542)
T PRK07786 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVAGGSS-------DDSV 152 (542)
T ss_pred HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchH------HHHHHhhhccCccceEEEecCCC-------cccc
Confidence 9999999999999999999999999999999999987432 111111111111 122222110 1123
Q ss_pred cCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCC-CCCCEEEEccCcchh
Q 004815 332 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDI-RKADIVAWPTNLGWM 410 (729)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~~~ 410 (729)
..+.++...... .........+++++++|||||||.||||+++|+++...+......+++ ..+++++...|+.|.
T Consensus 153 ~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 228 (542)
T PRK07786 153 LGYEDLLAEAGP----AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHI 228 (542)
T ss_pred cCHHHHhhccCC----CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHH
Confidence 456665443221 112234566889999999999999999999999998888777777777 678899999999999
Q ss_pred hhHHHHHHHhhcCceEEEeC-CCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHH
Q 004815 411 MGPWLVYASLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 489 (729)
Q Consensus 411 ~~~~~i~~~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~ 489 (729)
+++..++.++..|+++++.+ ...++..+++.|+++++|.+.++|+++..|.......... .++|.+++||++++++..
T Consensus 229 ~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~ 307 (542)
T PRK07786 229 AGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLL 307 (542)
T ss_pred HHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHH
Confidence 99888999999999999975 3357889999999999999999999999998765433322 369999999999999999
Q ss_pred HHHHhccCCCCeeecccccccccccccCCc-ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCc
Q 004815 490 LWLMGRALYKPVIEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 490 ~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~ 568 (729)
+++.+.+++.++++.||+||++...+.... .......++|+|++|+.++|+|+++++++.|+. |||++.+..+..+
T Consensus 308 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~g- 384 (542)
T PRK07786 308 RQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEV--GEIVYRAPTLMSG- 384 (542)
T ss_pred HHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCc--eEEEEEChhhhhh-
Confidence 999988888899999999999865332222 112345689999999999999999999999986 9999955444332
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeec
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 648 (729)
|+++++.++..|.. | ||+|||++++++||.++++||.||+||++|.+|++.|||++|. +||.|.+|+|++.+
T Consensus 385 y~~~~~~~~~~f~~-----~--~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~ 456 (542)
T PRK07786 385 YWNNPEATAEAFAG-----G--WFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLA-SHPDIVEVAVIGRA 456 (542)
T ss_pred hcCCHHHHHHHhhC-----C--cccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHH-hCCCccEEEEEecc
Confidence 35667777766642 3 9999999999999999999999999999999999999999995 99999999999988
Q ss_pred CCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhh
Q 004815 649 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724 (729)
Q Consensus 649 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~ 724 (729)
+...+ +.++++++... +.......+ +++.+++++++|++|..|+++++||+|++||++|++|++++.+..
T Consensus 457 ~~~~~-~~~~~~v~~~~-~~~~~~~~~----l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~ 526 (542)
T PRK07786 457 DEKWG-EVPVAVAAVRN-DDAALTLED----LAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACV 526 (542)
T ss_pred CcccC-ceEEEEEEECC-CCCCCCHHH----HHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhh
Confidence 87766 78888888776 321233344 445688899999999999999999999999999999999987743
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-65 Score=580.89 Aligned_cols=512 Identities=18% Similarity=0.187 Sum_probs=390.0
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
....|+++++++||++|+++.+. ++||+||+++++++|++|.++|+++||+|+|+++|++++++++|||+++
T Consensus 16 ~~~~l~~~~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~ 87 (579)
T PLN03102 16 PITFLKRASECYPNRTSIIYGKT--------RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMA 87 (579)
T ss_pred HHHHHHHHHHhCCCCeEEEECCc--------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 45678888889999999998776 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC-------CcEEEEcCCCCCcccccCCCC
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA-------PLAIVIPAKGSSFSMKLRDGD 331 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~ 331 (729)
|++++|++|.++.+++.++++.++++++|+++... +....+....+ ..++.+....... ......
T Consensus 88 G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 159 (579)
T PLN03102 88 GAVLNPINTRLDATSIAAILRHAKPKILFVDRSFE------PLAREVLHLLSSEDSNLNLPVIFIHEIDFPK--RPSSEE 159 (579)
T ss_pred CcEEeeccccCCHHHHHHHHhccCCeEEEEChhhH------HHHHHHHhhccccccccCceEEEeccccccc--CCcccc
Confidence 99999999999999999999999999999986532 11222221111 1233332211100 001123
Q ss_pred cCHHHHHHHhhccccCc-cccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchh
Q 004815 332 ISWLDFLERVRKLKENE-FAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWM 410 (729)
Q Consensus 332 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 410 (729)
.+|.++........... .......++++++|+|||||||.||||+++|+++..........+.+...+++++.+|+.|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~ 239 (579)
T PLN03102 160 LDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHC 239 (579)
T ss_pred cCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhh
Confidence 45665554322100000 00112456899999999999999999999999975544444445567778899999999999
Q ss_pred hhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHH
Q 004815 411 MGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYL 490 (729)
Q Consensus 411 ~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~ 490 (729)
.+....+.++..|+++++... .++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++.+.+
T Consensus 240 ~g~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 318 (579)
T PLN03102 240 NGWTFTWGTAARGGTSVCMRH-VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVK 318 (579)
T ss_pred cchhHHHHHHHhcCcEEeecc-CChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHH
Confidence 888777788999999998864 4677899999999999999999999999876433333456788899999999999888
Q ss_pred HHHhccCCCCeeecccccccccccccCCccc-----c--------cccccccCCCCCcEEEEEcC-CCCccCCCCCceeE
Q 004815 491 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQ-----A--------QSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGE 556 (729)
Q Consensus 491 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-----~--------~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGe 556 (729)
++.. + +.++++.||+||++..++...... + ...+..+.|++ .+.+.|+ .++++|.+....||
T Consensus 319 ~~~~-~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GE 394 (579)
T PLN03102 319 KVQR-L-GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGE 394 (579)
T ss_pred HHHH-c-CCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceE
Confidence 8764 4 478999999999986433221100 0 01122233444 4556664 46777753111499
Q ss_pred EEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCC
Q 004815 557 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 636 (729)
Q Consensus 557 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~ 636 (729)
|+|++..+..+ |+++++.++..|.. | ||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|. .|
T Consensus 395 l~v~g~~~~~G-Y~~~~~~t~~~f~~-----g--w~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~ 465 (579)
T PLN03102 395 IVIKGSSIMKG-YLKNPKATSEAFKH-----G--WLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLY-KY 465 (579)
T ss_pred EEEECcchhhh-hcCChhhhHhhhcc-----C--ceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHH-hC
Confidence 99965544332 45677777777742 3 9999999999999999999999999999999999999999995 89
Q ss_pred CCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHH------HHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCCh
Q 004815 637 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQ------LRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNK 710 (729)
Q Consensus 637 p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~------l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GK 710 (729)
|.|.+|+|++++++..+ +.++|+|++++ +. ..+.++ -...+++.++++||+|++|..|+++++||+|++||
T Consensus 466 p~V~~a~vv~~~~~~~~-~~~~a~v~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gK 542 (579)
T PLN03102 466 PKVLETAVVAMPHPTWG-ETPCAFVVLEK-GE-TTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGK 542 (579)
T ss_pred CCcceeEEEeccCcccc-ceeEEEEEecC-cc-cccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCccc
Confidence 99999999999998877 78999999876 43 221110 12345667888999999999999999999999999
Q ss_pred hhHHHHHHHHHhh
Q 004815 711 VMRRVLRKQLAQL 723 (729)
Q Consensus 711 idR~~L~~~~~~~ 723 (729)
++|++|++++.++
T Consensus 543 i~r~~L~~~~~~~ 555 (579)
T PLN03102 543 ILKPKLRDIAKGL 555 (579)
T ss_pred ccHHHHHHHHHHh
Confidence 9999999998763
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=568.72 Aligned_cols=481 Identities=21% Similarity=0.251 Sum_probs=390.1
Q ss_pred ccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Q 004815 184 SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVV 263 (729)
Q Consensus 184 ~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~v 263 (729)
+.+++.+||++|+.+...+ ..+||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++|++++
T Consensus 2 ~~~a~~~p~~~a~~~~~~~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v 75 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALG------RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYV 75 (488)
T ss_pred chhhhhCCCceEEEecCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEE
Confidence 3456789999999873211 2899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhc
Q 004815 264 SIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRK 343 (729)
Q Consensus 264 pldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (729)
|+++.++.+++.+++++++++++|+++...... .....++++......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~ 123 (488)
T PRK09088 76 PLNWRLSASELDALLQDAEPRLLLGDDAVAAGR--------------------------------TDVEDLAAFIASADA 123 (488)
T ss_pred eeCccCCHHHHHHHHHhCCCCEEEEcchhhccc--------------------------------ccccchhhhhhhccc
Confidence 999999999999999999999999987432100 001122222221111
Q ss_pred cccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH-HHHHHhhc
Q 004815 344 LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LVYASLLN 422 (729)
Q Consensus 344 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~i~~~L~~ 422 (729)
.. ........++++++++|||||||.||+|+++|+++...+......+.+..+|++++..|+.|.+++. .++.++..
T Consensus 124 ~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~ 201 (488)
T PRK09088 124 LE--PADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAV 201 (488)
T ss_pred cc--cccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhc
Confidence 00 1112234578899999999999999999999999988877776677788999999999999999984 57788899
Q ss_pred CceEEEeCCCCChhhHHHHHH--HcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCC
Q 004815 423 GASIALYNGSPLGSGFAKFVQ--DAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKP 500 (729)
Q Consensus 423 G~~lvl~~~~~~~~~l~~~i~--~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~ 500 (729)
|+++++.++ ..+..++..+. ++++|++..+|++++.+.+........+++||.+++||++++....+.+... +++
T Consensus 202 g~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~ 278 (488)
T PRK09088 202 GGSILVSNG-FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIP 278 (488)
T ss_pred CCEEEEcCC-CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCc
Confidence 999988754 56677777775 4899999999999999987654445567899999999999998887776643 588
Q ss_pred eeecccccccccccccCCc--ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccccc
Q 004815 501 VIEYCGGTEIGGGFITGSL--LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 578 (729)
Q Consensus 501 l~~~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~ 578 (729)
+++.||+||++..+..... ......+++|.|+++++++|+|+++++++.|++ |||+|.+..+..+ |+++++.++.
T Consensus 279 v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~g-Y~~~~~~~~~ 355 (488)
T PRK09088 279 MVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSPG-YWRRPQATAR 355 (488)
T ss_pred eeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCc--eEEEEECCccchh-hcCChhhhhh
Confidence 9999999999865432211 112345789999999999999999999999987 9999966544332 3556666766
Q ss_pred ccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 579 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
.|.. +.||+|||+|++++||.+++.||.||+||++|.+|+|.|||++|. .||+|.+++|++++++..| +..+
T Consensus 356 ~~~~------~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~ 427 (488)
T PRK09088 356 AFTG------DGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLA-DHPGIRECAVVGMADAQWG-EVGY 427 (488)
T ss_pred hhcC------CCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHH-hCCCcceEEEEeCCCccCC-ceeE
Confidence 6643 239999999999999999999999999999999999999999995 9999999999999887766 6788
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhh
Q 004815 659 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724 (729)
Q Consensus 659 a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~ 724 (729)
+++++++ +. ..+..++++ ++++++++|++|..|+++++||+|++||++|++|++++.+..
T Consensus 428 ~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~~ 487 (488)
T PRK09088 428 LAIVPAD-GA-PLDLERIRS----HLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAGR 487 (488)
T ss_pred EEEEECC-CC-CCCHHHHHH----HHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhcC
Confidence 8888876 43 234455444 677889999999999999999999999999999999987753
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=574.96 Aligned_cols=501 Identities=18% Similarity=0.207 Sum_probs=404.2
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|+++++ ||++|+++.+. ++||+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++
T Consensus 27 ~~~~~~~~a~--p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~ 96 (536)
T PRK10946 27 LTDILTRHAA--SDAIAVICGER--------QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKL 96 (536)
T ss_pred HHHHHHHhhC--CCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHc
Confidence 4567777776 99999998776 8999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
|++++++++..+..++..++++++++++++++..... ..-.....+.+..+. ..+.+... .+...+.+.
T Consensus 97 G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~ 166 (536)
T PRK10946 97 GVAPVNALFSHQRSELNAYASQIEPALLIADRQHALF-SDDDFLNTLVAEHSSLRVVLLLND---------DGEHSLDDA 166 (536)
T ss_pred CeEEecCCccccHHHHHHHHhhcCCCEEEEecccccc-chHHHHHHHHhhCCCceEEEEecC---------CCCccHHHH
Confidence 9988887777888889999999999999998642100 000111222222222 12222111 122234444
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH--HH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP--WL 415 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~ 415 (729)
+.... ...+.....++++++++|||||||.||||+++|+++...+......++++++|++++..|++|.+++ ..
T Consensus 167 ~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~ 242 (536)
T PRK10946 167 INHPA----EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPG 242 (536)
T ss_pred hhCcc----cccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhh
Confidence 43221 1122334567899999999999999999999999999998888888999999999999999998776 36
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcC--CCCCCCCCCccEEEeecCCCCHhHHHHHH
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN--CIDGYDWSSIRCFGSTGEASNVDEYLWLM 493 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~--~~~~~~l~sLr~v~~gGe~l~~~~~~~~~ 493 (729)
++.+|..|+++++.+. .++..++++++++++|++.++|+++..|++.. ......++++|.+++||+++++++.+++.
T Consensus 243 ~~~~l~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~ 321 (536)
T PRK10946 243 ALGVFLAGGTVVLAPD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIP 321 (536)
T ss_pred HHHHhhcCcEEEECCC-CCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHH
Confidence 7899999999998653 57778999999999999999999999998752 22334578999999999999999999887
Q ss_pred hccCCCCeeecccccccccccccCCcccccccccccCCC-CCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccc
Q 004815 494 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLN 572 (729)
Q Consensus 494 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~ 572 (729)
+.+ ++++++.||+||+++.+............++|+|+ +++.++|+|++|++++.|+. |||++.+.....+ |+++
T Consensus 322 ~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g~~~~~G-Y~~~ 397 (536)
T PRK10946 322 AEL-GCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEV--GRLMTRGPYTFRG-YYKS 397 (536)
T ss_pred Hhc-CCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCc--cEEEEecCccchh-hcCC
Confidence 666 48999999999976544322222223457899999 79999999999999999997 9999966554433 3567
Q ss_pred ccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004815 573 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652 (729)
Q Consensus 573 ~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~ 652 (729)
++.++..|..+. ||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+++|++.++...
T Consensus 398 ~~~t~~~~~~d~------~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~ 470 (536)
T PRK10946 398 PQHNASAFDANG------FYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLL-RHPAVIHAALVSMEDELM 470 (536)
T ss_pred cccchhhcccCC------ceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHH-hCCCcceEEEEcCCCccc
Confidence 778888886543 9999999999999999999999999999999999999999995 999999999999998877
Q ss_pred CceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhh-CCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhh
Q 004815 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK-LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724 (729)
Q Consensus 653 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~-L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~ 724 (729)
| +.+++++++++ ..+..+++++ +++. |++|++|..|++++++|+|++||++|++|++++.++.
T Consensus 471 g-~~~~a~vv~~~----~~~~~~l~~~----~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 471 G-EKSCAFLVVKE----PLKAVQLRRF----LREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred C-ceEEEEEEeCC----CCCHHHHHHH----HHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhc
Confidence 7 78999999876 3456666664 5554 9999999999999999999999999999999987753
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=573.98 Aligned_cols=502 Identities=18% Similarity=0.181 Sum_probs=400.0
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...+.|+++++++||++|+++.+. .+.++++||+||.++++++|+.|.++|+++||+|+|+++|+.++++++|||++
T Consensus 8 ~l~~~~~~~a~~~p~~~a~~~~~~---~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~ 84 (517)
T PRK08008 8 HLRQMWDDLADVYGHKTALIFESS---GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAK 84 (517)
T ss_pred cHHHHHHHHHHHCCCceEEEcccC---CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 355778888999999999998653 23345899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC---CcEEEEcCCCCCcccccCCCCcCH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA---PLAIVIPAKGSSFSMKLRDGDISW 334 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~ 334 (729)
+|++++|++|.++.+++.+++++++++++++++... +...++.+... ..+++...... .......+
T Consensus 85 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 153 (517)
T PRK08008 85 IGAIMVPINARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQQEDATPLRHICLTRVALP-----ADDGVSSF 153 (517)
T ss_pred cCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchh------HHHHHHHhhccccCcEEEEecCCCc-----ccccccCH
Confidence 999999999999999999999999999999987532 22233322211 12222221110 01123344
Q ss_pred HHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-
Q 004815 335 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP- 413 (729)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~- 413 (729)
.+....... .........++++++++|||||||.||||+++|++++...........+.+++++++.+|+.|..+.
T Consensus 154 ~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 230 (517)
T PRK08008 154 TQLKAQQPA---TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQC 230 (517)
T ss_pred HHHhccCCc---cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHH
Confidence 443322111 1111234467899999999999999999999999998654433344567889999999999887655
Q ss_pred HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHH
Q 004815 414 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 493 (729)
Q Consensus 414 ~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~ 493 (729)
..++.++..|+++++.+. .++..+++.|+++++|++.++|++++.++...........+++.+.+++ .++.+...++.
T Consensus 231 ~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~ 308 (517)
T PRK08008 231 TAAMAAFSAGATFVLLEK-YSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFE 308 (517)
T ss_pred HHHHHHHhcCcEEEEccc-cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHH
Confidence 668889999999999864 6788999999999999999999999998866543333456788887764 78888887777
Q ss_pred hccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeec----cccCCCcc
Q 004815 494 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSP----LIFGASST 569 (729)
Q Consensus 494 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~----~~~~~~~~ 569 (729)
+.+ ++++++.||+||++..++...........++|+|++|++++|+|++|++++.|+. |||++.+ ..+. .|
T Consensus 309 ~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~~~~--gy 383 (517)
T PRK08008 309 ERF-GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEI--GEICIKGVPGKTIFK--EY 383 (517)
T ss_pred HHh-CCeEEeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCc--ceEEEeCCCCcchhh--hH
Confidence 665 4899999999999865554444344455789999999999999999999999997 9999964 2222 24
Q ss_pred cccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecC
Q 004815 570 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 649 (729)
Q Consensus 570 ~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~ 649 (729)
+++++.+++.|..+ | ||+|||+|++++||+++++||.||+||++|.+|+|.|||++|. .||.|.+|+|+++++
T Consensus 384 ~~~~~~~~~~~~~~----g--~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~-~~~~v~~~~v~g~~~ 456 (517)
T PRK08008 384 YLDPKATAKVLEAD----G--WLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIA-THPKIQDIVVVGIKD 456 (517)
T ss_pred hCChHHHhhcccCC----C--CeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHH-hCCceeeEEEEccCC
Confidence 56777788788643 2 9999999999999999999999999999999999999999995 999999999999988
Q ss_pred CCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 650 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 650 ~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
...+ +.++++|+++. +. ..+.+++++ +++++|++|++|..++++++||+|++||++|+.|+
T Consensus 457 ~~~~-~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 457 SIRD-EAIKAFVVLNE-GE-TLSEEEFFA----FCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred CCCC-ceEEEEEEECC-CC-CCCHHHHHH----HHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 8766 78999999887 44 345555555 57788999999999999999999999999999874
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-65 Score=591.34 Aligned_cols=518 Identities=16% Similarity=0.116 Sum_probs=385.9
Q ss_pred hHHhhhhccccCCCCCCeEEEEeec-CCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLDDIVIRWCDE-GDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAI 255 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~ 255 (729)
....++|.+.++++|+++|+.+... .+..+.++.+||+||.++++++|++|.++|+++||+|+|+++|++++++++|||
T Consensus 43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 122 (660)
T PLN02861 43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (660)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3455778888999999999976310 001234568999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC---CcEEEEcCCCCCcc--c-ccCC
Q 004815 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA---PLAIVIPAKGSSFS--M-KLRD 329 (729)
Q Consensus 256 l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~--~-~~~~ 329 (729)
+++|+++|||+|.++.+++.+++++++++++|+++... ..........+ ..++.+........ . ....
T Consensus 123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 196 (660)
T PLN02861 123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI------SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGV 196 (660)
T ss_pred HHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH------HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCc
Confidence 99999999999999999999999999999999976421 11111112111 12233321110000 0 0001
Q ss_pred CCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCC-----CCCCCEEEEc
Q 004815 330 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD-----IRKADIVAWP 404 (729)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-----~~~~d~~l~~ 404 (729)
...+|.++...... ........++++|+|+|||||||.||||++||++++..+......++ +.++|+++++
T Consensus 197 ~~~~~~~~~~~~~~----~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 272 (660)
T PLN02861 197 SCFSWEEFSLMGSL----DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSY 272 (660)
T ss_pred EEEEHHHHHHhCcc----cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEE
Confidence 12356666543221 11122346899999999999999999999999999888766555443 4789999999
Q ss_pred cCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcC--------------------
Q 004815 405 TNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN-------------------- 464 (729)
Q Consensus 405 ~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~-------------------- 464 (729)
+|++|.++....+.+++.|+++++.. .++..+++.|+++++|+++++|++++.+.+..
T Consensus 273 lPl~H~~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~ 350 (660)
T PLN02861 273 LPLAHVYDQVIETYCISKGASIGFWQ--GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYN 350 (660)
T ss_pred CcHHHHHHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999998755556899999999874 46788999999999999999999999886410
Q ss_pred -----------------CCCCC-------CC-CCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCc
Q 004815 465 -----------------CIDGY-------DW-SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL 519 (729)
Q Consensus 465 -----------------~~~~~-------~l-~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~ 519 (729)
..... .+ .+||.+++||+++++++.+ +...++..++++.||+||+++.++....
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~ 429 (660)
T PLN02861 351 YKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIA 429 (660)
T ss_pred HHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeeccc
Confidence 00000 11 4799999999999999754 5555554579999999999765443322
Q ss_pred ccccccccccCCCCCcEEEEEc--CCC-CccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCc
Q 004815 520 LQAQSLAAFSTPAMGCKLFILG--NDG-CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGD 596 (729)
Q Consensus 520 ~~~~~~~~iG~p~~~~~~~v~d--~~g-~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGD 596 (729)
......+++|+|++|++++|+| ++| ..++.+.. |||+|.+..+..+ |+++++.|++.|. +| ||+|||
T Consensus 430 ~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~--GEi~vrGp~v~~G-Y~~~pe~T~~~f~-----dG--w~~TGD 499 (660)
T PLN02861 430 NVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPR--GEICLRGNTLFSG-YHKRQDLTEEVLI-----DG--WFHTGD 499 (660)
T ss_pred ccCCCCCCccCccCceEEEEEEccccCcccCCCCCc--eeEEEcCCccccc-ccCCHHHHHhhhh-----cc--CcccCc
Confidence 2223457999999999999998 444 33444544 9999965544332 4678888988884 14 999999
Q ss_pred eEEEecCceEEEEcccCCeeec-CceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCC-------C
Q 004815 597 VFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSN-------Y 668 (729)
Q Consensus 597 l~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~-------~ 668 (729)
+|++|+||+|+|+||+||+||+ +|++|+|.|||++|. +||.|.+|+|++.+ .+ +.++|+|++.... .
T Consensus 500 lg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~-~~p~V~~a~V~G~~---~~-~~~~A~vv~~~~~l~~~~~~~ 574 (660)
T PLN02861 500 IGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYS-RCPLIASIWVYGNS---FE-SFLVAVVVPDRQALEDWAANN 574 (660)
T ss_pred eEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHh-cCCCeeEEEEEecC---Cc-ceeEEEEEcCHHHHHHHHHHc
Confidence 9999999999999999999997 799999999999995 99999999999975 23 6799999976410 0
Q ss_pred -CCCChH------HHHHHHHHHHHh-----hCCCCCccceEEeCC-CC-----CCCCCChhhHHHHHHHHHh
Q 004815 669 -TPPDLN------QLRMSFNSAVQK-----KLNPLFKVSHVVPLP-SL-----PRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 669 -~~~~~~------~l~~~l~~~l~~-----~L~~~~~P~~i~~v~-~l-----P~t~~GKidR~~L~~~~~~ 722 (729)
...+.. +.+..+.+.+.+ .|+.|.+++.|..++ .+ ++|+++|+.|+.+.+.+.+
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02861 575 NKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKD 646 (660)
T ss_pred CCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHH
Confidence 001111 133344444543 489999999888855 46 8999999999999998876
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=576.42 Aligned_cols=505 Identities=19% Similarity=0.214 Sum_probs=397.1
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
..+.|.++++++|+++|+++.+. .+||.||.++++++|++|.+. |+++||+|+++++|++++++++|||++
T Consensus 26 ~~~~l~~~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~ 97 (562)
T PRK12492 26 VVEVFERSCKKFADRPAFSNLGV--------TLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALR 97 (562)
T ss_pred HHHHHHHHHHhCCCCeeEecCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 45668888889999999997665 899999999999999999985 999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCC---------------CC
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKG---------------SS 322 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------------~~ 322 (729)
+|++++|++|.++.+++.+++++++++++++++..... ...+........+...... ..
T Consensus 98 ~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK12492 98 AGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKL------VQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDK 171 (562)
T ss_pred cCeEEeccCccCCHHHHHHHHhccCceEEEeccccchH------HHHhhhccCceEEEeechhhccccccchhccccccc
Confidence 99999999999999999999999999999997643211 1111110000000000000 00
Q ss_pred ----cccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCC----
Q 004815 323 ----FSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD---- 394 (729)
Q Consensus 323 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~---- 394 (729)
...........|+++...... ....+.....+++++|+|||||||.||||+++|+++...+......++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~ 248 (562)
T PRK12492 172 VKKMVPAYHLPQAVPFKQALRQGRG---LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGP 248 (562)
T ss_pred ccccccccCCcccccHHHHHhccCC---CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccc
Confidence 000001122445555432211 111223456789999999999999999999999999777655444332
Q ss_pred -----CCCC-CEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCC
Q 004815 395 -----IRKA-DIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID 467 (729)
Q Consensus 395 -----~~~~-d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~ 467 (729)
+..+ ++++...|+.|.++. +.++..+..|++.++.....++..+++.|+++++|++..+|+++..|.+.....
T Consensus 249 ~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 328 (562)
T PRK12492 249 DGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFK 328 (562)
T ss_pred cccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcc
Confidence 2333 467888999999887 456677889998887765567788999999999999999999999998876555
Q ss_pred CCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCcc
Q 004815 468 GYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPI 547 (729)
Q Consensus 468 ~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~ 547 (729)
..+++++|.+++||+++++++.+++.+.+ ++++++.||+||++..++..........+++|+|+++++++|+|++++++
T Consensus 329 ~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~ 407 (562)
T PRK12492 329 DLDFSALKLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNEL 407 (562)
T ss_pred cccccceeEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCC
Confidence 66788999999999999999998887655 58999999999998765443332233456899999999999999999999
Q ss_pred CCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHH
Q 004815 548 PQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVE 627 (729)
Q Consensus 548 p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~e 627 (729)
+.|+. |||+|++..+..+ |+++++.++..|.. +.||+|||+|++++||+++|.||.||+||++|++|+|.|
T Consensus 408 ~~g~~--Gel~v~g~~~~~g-Y~~~~~~t~~~~~~------~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~e 478 (562)
T PRK12492 408 PLGER--GELCIKGPQVMKG-YWQQPEATAEALDA------EGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNE 478 (562)
T ss_pred CCCCc--eEEEEeCCccccc-cccCchhhhhcccC------CCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHH
Confidence 99987 9999965544332 45677777777752 239999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCC
Q 004815 628 IERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTA 707 (729)
Q Consensus 628 IE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 707 (729)
||++|. .||.|.+++|++.++...+ +.++++++..+ + ..+.+++++ .++++|++|++|..|+++++||+|+
T Consensus 479 IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~--~~~~~~i~~----~~~~~l~~~~~P~~i~~~~~~P~t~ 549 (562)
T PRK12492 479 IEDVVM-AHPKVANCAAIGVPDERSG-EAVKLFVVARD-P--GLSVEELKA----YCKENFTGYKVPKHIVLRDSLPMTP 549 (562)
T ss_pred HHHHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCC-C--CCCHHHHHH----HHHHhcccccCCcEEEEeccCCCCC
Confidence 999995 8999999999999887776 78889988765 2 234455444 5778899999999999999999999
Q ss_pred CChhhHHHHHHH
Q 004815 708 TNKVMRRVLRKQ 719 (729)
Q Consensus 708 ~GKidR~~L~~~ 719 (729)
+||++|++|+++
T Consensus 550 ~GK~~r~~L~~~ 561 (562)
T PRK12492 550 VGKILRRELRDI 561 (562)
T ss_pred CCceeHHHHHhh
Confidence 999999999875
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-65 Score=608.56 Aligned_cols=490 Identities=15% Similarity=0.107 Sum_probs=373.0
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|+++++++||++|+++.++ ++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 449 l~~ll~~~a~~~pd~~Al~~~~~--------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~a 520 (994)
T PRK07868 449 LGRIIAEQARDAPKGEFLLFDGR--------VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRL 520 (994)
T ss_pred HHHHHHHHHHHCCCCeEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 45678888999999999999776 8999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCC--CCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRD--GDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~ 336 (729)
|++++|+||. +++.++++++++++||+++... ..+. .....++++..... ....... ....+++
T Consensus 521 Gav~vpl~p~---~~l~~il~~s~~~~li~~~~~~---------~~~~-~~~~~iiv~~~~~~-~~~~~~~~~~~~~~~~ 586 (994)
T PRK07868 521 GAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNL---------EAAR-QLPGRVLVLGGGES-RDLDLPDDADVIDMEK 586 (994)
T ss_pred CCEEEEeCCc---hhHHHHHhccCCeEEEEChHHH---------HHHH-hcCceEEEecCCcc-ccccCCcchhhhhhhh
Confidence 9999999985 6899999999999999986432 1111 12233444432110 0000000 0011111
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 416 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i 416 (729)
....... .+.........++++|||+|| ||||.||++.++|.+...........++++++|++++.+|++|+++++..
T Consensus 587 ~~~~~~~-~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~ 664 (994)
T PRK07868 587 IDPDAVE-LPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVS 664 (994)
T ss_pred cCccccc-CCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHH
Confidence 1000000 000001112236899999999 57888888888887655444444566789999999999999999999765
Q ss_pred HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
+.+++.|++.++.....++..+++.|++++||++.++|++++.|++.......++++||.++ |+.+++++++++.+.+
T Consensus 665 l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~--g~gl~~~l~~~~~~~~ 742 (994)
T PRK07868 665 LGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI--GSGMPTGLWERVVEAF 742 (994)
T ss_pred HHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe--cCCCCHHHHHHHHHHh
Confidence 55555555555544457889999999999999999999999999876444445678999876 3349999999999888
Q ss_pred CCCCeeecccccccccccccCCcccccccccccCCCCCc-EEEEE-----------cCCC--CccCCCCCceeEEEeecc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGC-KLFIL-----------GNDG--CPIPQNVPGMGELALSPL 562 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~v~-----------d~~g--~~~p~g~~giGel~v~~~ 562 (729)
+.++++|.||+||+++... .. .....+++|+|++|+ +++|. |++| +.++.|++ |||++.+.
T Consensus 743 ~~~~l~~~YG~TE~~~~~~-~~--~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~--Gel~~~~~ 817 (994)
T PRK07868 743 APAHVVEFFATTDGQAVLA-NV--SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEV--GVLLARAR 817 (994)
T ss_pred Cchheeeeeeccccccccc-cc--CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCc--eEEEEecC
Confidence 7789999999999875432 21 123457899999997 56553 5666 66888987 99999543
Q ss_pred ccCCCcccccccc--cccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCee
Q 004815 563 IFGASSTLLNANH--YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVL 640 (729)
Q Consensus 563 ~~~~~~~~~~~~~--~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~ 640 (729)
.. .+++. ++.+|. ++++||+|||+|++|+||+|+|+||.|||||++|.+|+|.|||++|. +||+|.
T Consensus 818 ~~------~~p~~t~~~~~~~-----~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~-~hp~V~ 885 (994)
T PRK07868 818 GP------IDPTASVKRGVFA-----PADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALG-RIGGVD 885 (994)
T ss_pred CC------CChhhhhHhcccc-----cCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHh-cCCCee
Confidence 21 13332 233442 25679999999999999999999999999999999999999999995 999999
Q ss_pred eeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHH
Q 004815 641 ETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 720 (729)
Q Consensus 641 ~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~ 720 (729)
+|+|++++++. + +.++|||++++ +. ..+.++|+++ +++ ||+||+|+.|+++++||+|+|||++|++|++..
T Consensus 886 ~aaVvg~~d~~-~-~~~~a~Vv~~~-~~-~~~~~~L~~~----l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~ 956 (994)
T PRK07868 886 LAVTYGVEVGG-R-QLAVAAVTLRP-GA-AITAADLTEA----LAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAG 956 (994)
T ss_pred EEEEEeecCCC-C-ceEEEEEEeCC-CC-cCCHHHHHHH----HHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcC
Confidence 99999998865 4 68999999887 54 4666776665 544 899999999999999999999999999998653
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-64 Score=574.31 Aligned_cols=508 Identities=19% Similarity=0.221 Sum_probs=405.0
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++||++|+++.++ +++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 25 l~~~~~~~~~~~pd~~a~~~~~~-------~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~ 97 (547)
T PRK06087 25 LADYWQQTARAMPDKIAVVDNHG-------ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKV 97 (547)
T ss_pred HHHHHHHHHHHCCCceEEEcCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 44667788889999999997653 28999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|++++|++|.++.+++.+++++++++++++++..... ...+....+...... .++.+...... .....+.+
T Consensus 98 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 170 (547)
T PRK06087 98 GAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQT-RPVDLILPLQNQLPQLQQIVGVDKLAPA------TSSLSLSQ 170 (547)
T ss_pred CcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccc-cHHHHHHHHHhhCCCCcEEEEeCCcCCC------cCccCHHH
Confidence 9999999999999999999999999999998642110 111111222222221 22333221110 11224444
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WL 415 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~ 415 (729)
+...... ........++++++|+|||||||.||||+++|++++.........+++.++|++++.+|+.|.+++ ..
T Consensus 171 ~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 246 (547)
T PRK06087 171 IIADYEP----LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHG 246 (547)
T ss_pred HhccCCc----ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHH
Confidence 4332111 112234567899999999999999999999999998887777777889999999999999999987 46
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
++.+++.|+++++.+. .++..+++.|+++++|++..+|+++..++........+++++|.+++||+++++++.+.+...
T Consensus 247 ~~~~l~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~ 325 (547)
T PRK06087 247 VTAPFLIGARSVLLDI-FTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR 325 (547)
T ss_pred HHHHHhcCCEEEecCC-CCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc
Confidence 8889999999999764 578899999999999999988777776766544455668899999999999999998877653
Q ss_pred cCCCCeeecccccccccccccCCccc-ccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLLQ-AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~ 574 (729)
++++++.||+||++.......... .....++|+|++|+.++|+|+++++++.|+. |||++.+..+..+ |+++++
T Consensus 326 --~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~g-y~~~~~ 400 (547)
T PRK06087 326 --GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCE--GEEASRGPNVFMG-YLDEPE 400 (547)
T ss_pred --CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCc--ceEEEeccccccc-ccCCHH
Confidence 589999999999986544322211 1233578999999999999999999999987 9999965544433 356666
Q ss_pred ccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 575 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
.+...|..+ .||+|||+|++++||+++++||.||+||++|.+|+|.+||++|. .+|+|.+++|++.+++..|
T Consensus 401 ~~~~~~~~~------g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g- 472 (547)
T PRK06087 401 LTARALDEE------GWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILL-QHPKIHDACVVAMPDERLG- 472 (547)
T ss_pred HHHHHhCCC------CCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHH-hCCCeeEEEEEecCCCCcC-
Confidence 666666432 39999999999999999999999999999999999999999995 8999999999999888777
Q ss_pred eeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++++++++..+.+. ..+.+++.+++ .++.|++|++|..|.++++||+|++||++|++|++++.+
T Consensus 473 ~~~~~~v~~~~~~~-~~~~~~~~~~~---~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~ 536 (547)
T PRK06087 473 ERSCAYVVLKAPHH-SLTLEEVVAFF---SRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMR 536 (547)
T ss_pred ceEEEEEEECCCCC-CCCHHHHHHHH---HhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHH
Confidence 78999999875222 34555555542 236899999999999999999999999999999998876
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-64 Score=569.22 Aligned_cols=492 Identities=16% Similarity=0.144 Sum_probs=407.6
Q ss_pred hhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Q 004815 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (729)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa 260 (729)
++|+++++.+|+++|+++.++ ++||+||.++++++|.+|.++|+++|++|+++++|+.+++++++||+++|+
T Consensus 6 ~~l~~~a~~~p~~~~~~~~~~--------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~ 77 (503)
T PRK04813 6 ETIEEFAQTQPDFPAYDYLGE--------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGH 77 (503)
T ss_pred HHHHHHHHhCCCceEEEeCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 567778889999999998776 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHH
Q 004815 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 340 (729)
Q Consensus 261 ~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 340 (729)
+++|+++.++.+++.++++.++++++++++...... ... ....++++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~----------------~~~~~~~~~~~ 127 (503)
T PRK04813 78 AYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------------LGI----------------PVITLDELKDI 127 (503)
T ss_pred EEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------------cCC----------------cEEehHHhhhh
Confidence 999999999999999999999999999987531000 000 01112222111
Q ss_pred hhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHh
Q 004815 341 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 420 (729)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L 420 (729)
... ...........++++++++|||||||.||||.++|+++.....+....+++..+++++...|++|+.+.+.++.+|
T Consensus 128 ~~~-~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l 206 (503)
T PRK04813 128 FAT-GNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTL 206 (503)
T ss_pred hhc-cccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHH
Confidence 100 0001112335678899999999999999999999999999888888889999999999999999999998888999
Q ss_pred hcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCC
Q 004815 421 LNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 498 (729)
Q Consensus 421 ~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~ 498 (729)
..|+++++.++. .++..+++.++++++|++..+|++++.+.........+++++|.++++|+++++.+.+++.+++++
T Consensus 207 ~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~ 286 (503)
T PRK04813 207 ASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPS 286 (503)
T ss_pred hcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCC
Confidence 999999998754 367789999999999999999999988765544445568899999999999999999999988877
Q ss_pred CCeeecccccccccccccCCc----ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccc
Q 004815 499 KPVIEYCGGTEIGGGFITGSL----LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574 (729)
Q Consensus 499 ~~l~~~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~ 574 (729)
.++++.||+||++..++.... .......++|+|.++++++|+|++|.+++.|+. |||++.+.....+ |+++++
T Consensus 287 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~g-y~~~~~ 363 (503)
T PRK04813 287 ATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQ--GEIVISGPSVSKG-YLNNPE 363 (503)
T ss_pred ceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCc--eEEEEeccccccc-cCCChh
Confidence 899999999998764433211 112334579999999999999999999999986 9999965544332 356677
Q ss_pred ccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 575 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
.+...|..+ .|.+||+|||+|++ +||++++.||.||+||++|.+|+|.|||+.|. .+|+|.+++|++.++...+
T Consensus 364 ~~~~~~~~~---~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~- 437 (503)
T PRK04813 364 KTAEAFFTF---DGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLR-QSSYVESAVVVPYNKDHKV- 437 (503)
T ss_pred HhHHhhccC---CCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHH-hCCCcceEEEEEeeCCCCc-
Confidence 776666432 35679999999999 99999999999999999999999999999995 8999999999997766555
Q ss_pred eeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+.+++++++++ +. .....++.+.++++++++|++|++|..|+++++||+|+|||++|++|++++++
T Consensus 438 ~~~~~~v~~~~-~~-~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 503 (503)
T PRK04813 438 QYLIAYVVPKE-ED-FEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK 503 (503)
T ss_pred cEEEEEEEecc-cc-ccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence 78999998876 32 12334566778888999999999999999999999999999999999998763
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=568.27 Aligned_cols=489 Identities=20% Similarity=0.208 Sum_probs=381.6
Q ss_pred cccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEe
Q 004815 185 VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVS 264 (729)
Q Consensus 185 ~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vp 264 (729)
.+++++|+++|+++.+.+ .++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++++|
T Consensus 5 ~~a~~~p~~~a~~~~~~~------~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~ 78 (501)
T PRK13390 5 THAQIAPDRPAVIVAETG------EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITA 78 (501)
T ss_pred hhhhhCCCCcEEEecCCC------eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEec
Confidence 456789999999875321 38999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhcc
Q 004815 265 IADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKL 344 (729)
Q Consensus 265 ldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (729)
+++.++.+++.+++++++++++++++.... ......... ...+.+... ......+++......
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~-- 141 (501)
T PRK13390 79 INHHLTAPEADYIVGDSGARVLVASAALDG------LAAKVGADL-PLRLSFGGE--------IDGFGSFEAALAGAG-- 141 (501)
T ss_pred cccCCCHHHHHHHHHhcCCcEEEEcchhhh------HHHHhhhcc-ceEEEecCc--------ccccccHHHHhcccC--
Confidence 999999999999999999999999764210 011110000 011111100 011122333221100
Q ss_pred ccCccccccCCCCCeeEEEeccCCCCCCceEEe--CCchHHHH----HHHHHhhCCCCCCCEEEEccCcchhhhHHHHHH
Q 004815 345 KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPW--TNATPFKA----AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418 (729)
Q Consensus 345 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~--sh~~l~~~----~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~ 418 (729)
+ .....+++++|+|||||||.||||++ +|.++... .......+++..+|+++..+|++|+.++...+.
T Consensus 142 -----~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~ 215 (501)
T PRK13390 142 -----P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSM 215 (501)
T ss_pred -----C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHH
Confidence 0 01122357999999999999999995 55655432 122234578899999999999999988754455
Q ss_pred HhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 419 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 419 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
.+..|+++++.+. .++..+++.|+++++|++.++|+++..|..... ....+++++|.+++||+++++++.+.+.+.+
T Consensus 216 ~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~ 294 (501)
T PRK13390 216 VHALGGTVVLAKR-FDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL 294 (501)
T ss_pred HHhcCceEEEcCC-cCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc
Confidence 6788999988764 578899999999999999999999999886532 1334578999999999999999988887655
Q ss_pred CCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY 576 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~ 576 (729)
+ .++++.||+||++.++...........+++|+|++| .++|+|++|++++.|++ |||+|.+..+.. .|+++++.+
T Consensus 295 ~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~-gy~~~~~~t 369 (501)
T PRK13390 295 G-PIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRI--GTVYFERDRLPF-RYLNDPEKT 369 (501)
T ss_pred C-CceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecCCccc-cccCChhhh
Confidence 4 789999999999864433222222345689999999 79999999999999997 999996554333 245677777
Q ss_pred ccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCcee
Q 004815 577 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQ 656 (729)
Q Consensus 577 ~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 656 (729)
+..|... +..||+|||+|++++||++++.||.|++||++|++|+|.|||++|. .||+|.+|+|++++++..+ +.
T Consensus 370 ~~~~~~~----~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~~~~-e~ 443 (501)
T PRK13390 370 AAAQHPA----HPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALT-MHPAVHDVAVIGVPDPEMG-EQ 443 (501)
T ss_pred HHhhccC----CCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-ce
Confidence 7766431 1239999999999999999999999999999999999999999995 9999999999999988777 78
Q ss_pred EEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 657 LTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 657 l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
+++++++.. +. .. .+++.+.+++.++++||.||+|..|+++++||+|++||++|++|+
T Consensus 444 ~~~~v~~~~-~~-~~-~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 444 VKAVIQLVE-GI-RG-SDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred eEEEEEecC-CC-Cc-chhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 999998876 43 12 233455677788999999999999999999999999999999984
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-64 Score=569.73 Aligned_cols=511 Identities=17% Similarity=0.212 Sum_probs=400.6
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
.+.++|+.+++++||++|++.... +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~ 86 (542)
T PRK06018 11 LCHRIIDHAARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMG 86 (542)
T ss_pred CHHHHHHHHHHhCCCceEEEeecc----CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHh
Confidence 345678888899999999986322 1235899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
+|++++|++|.++.+++..+++.+++++++++.... +...++....+. ..+++.... .......++...|.
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 159 (542)
T PRK06018 87 IGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFV------PILEKIADKLPSVERYVVLTDAA-HMPQTTLKNAVAYE 159 (542)
T ss_pred cCeEeeccccccCHHHHHHHHhccCCCEEEEccccH------HHHHHHHhhCCCccEEEEecccc-cccccCccccccHH
Confidence 999999999999999999999999999999987432 222222222222 222222111 10001111233555
Q ss_pred HHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHH-H-HHHHHHhhCCCCCCCEEEEccCcchhhhH
Q 004815 336 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPF-K-AAADAWCHMDIRKADIVAWPTNLGWMMGP 413 (729)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~-~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 413 (729)
+++..... ........++++++++|||||||.||||+++|++.+ . ........+++..+|+++...|+.|+.+.
T Consensus 160 ~~~~~~~~----~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~ 235 (542)
T PRK06018 160 EWIAEADG----DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSW 235 (542)
T ss_pred HHhccCCc----ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhh
Confidence 55443211 112234567889999999999999999999999743 2 22333456788999999999999998887
Q ss_pred HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHH
Q 004815 414 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 493 (729)
Q Consensus 414 ~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~ 493 (729)
...+.++..|+++++.....++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.++++
T Consensus 236 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~ 315 (542)
T PRK06018 236 GIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFE 315 (542)
T ss_pred HHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHH
Confidence 66678899999999876556788899999999999999999999999876555555678999999999999999999988
Q ss_pred hccCCCCeeecccccccccccccCCccc----------ccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccc
Q 004815 494 GRALYKPVIEYCGGTEIGGGFITGSLLQ----------AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLI 563 (729)
Q Consensus 494 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~ 563 (729)
+ + +.++++.||+||++.+.+...... .....++|+|.+|++++|+|++++++|.+....|||++.+..
T Consensus 316 ~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~ 393 (542)
T PRK06018 316 D-M-GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPA 393 (542)
T ss_pred H-h-CCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCC
Confidence 7 4 589999999999986544332110 011357899999999999999999998753225999996544
Q ss_pred cCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeE
Q 004815 564 FGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETA 643 (729)
Q Consensus 564 ~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~ 643 (729)
+..+| + +. +...+. ..+||+|||+|++++||+++++||.||+||++|.+|++.|||++|. .||+|.+|+
T Consensus 394 ~~~gy-~-~~--~~~~~~------~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~ 462 (542)
T PRK06018 394 VAAAY-Y-RV--DGEILD------DDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAV-GHPKVAEAA 462 (542)
T ss_pred cchhh-h-cC--cccEec------CCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHH-hCCcceeEE
Confidence 43322 2 21 111221 2349999999999999999999999999999999999999999995 899999999
Q ss_pred EEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 644 AIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 644 Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
|++.+++..+ +.++++|++.+ +. ..+.+++++ .++++|+.|++|..|+++++||+|++||++|++|++++.+.
T Consensus 463 v~~~~~~~~~-~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~ 535 (542)
T PRK06018 463 VIGVYHPKWD-ERPLLIVQLKP-GE-TATREEILK----YMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKDY 535 (542)
T ss_pred EEeccCCCcC-ceeEEEEEeCC-CC-CCCHHHHHH----HHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhcc
Confidence 9999988766 78888988876 44 345555555 57788999999999999999999999999999999999874
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-64 Score=569.92 Aligned_cols=506 Identities=20% Similarity=0.216 Sum_probs=399.3
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++||++|+++.++ .+||.||+++++++|++|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 5 l~~~~~~~a~~~p~~~a~~~~~~--------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~ 76 (533)
T PRK07798 5 IADLFEAVADAVPDRVALVCGDR--------RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKA 76 (533)
T ss_pred HHHHHHHHHHhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 34678888999999999999766 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCc--EEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL--AIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|++++|+++.++.+++.+++++++++++++++... .....+....+.. .+.+..... .....+...+.+
T Consensus 77 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 147 (533)
T PRK07798 77 RAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFA------PRVAEVLPRLPKLRTLVVVEDGSG---NDLLPGAVDYED 147 (533)
T ss_pred CeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhH------HHHHHHhccCCCccEEEEecCCcc---cccCCccccHHH
Confidence 99999999999999999999999999999987421 1122222222211 222221111 011123446766
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh---------CCC------CCCCEE
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---------MDI------RKADIV 401 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---------~~~------~~~d~~ 401 (729)
++..... ...... ...+.++++|||||||.||||+++|+++.......... ..+ ..++++
T Consensus 148 ~~~~~~~----~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (533)
T PRK07798 148 ALAAGSP----ERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRR 222 (533)
T ss_pred HHhccCC----cCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceE
Confidence 6543221 111112 23455799999999999999999999987654432211 112 577899
Q ss_pred EEccCcchhhhHHHHHHHhhcCceEEEeCC-CCChhhHHHHHHHcCCcEEEecHHHHH-HHHhcCC-CCCCCCCCccEEE
Q 004815 402 AWPTNLGWMMGPWLVYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVR-TWKSTNC-IDGYDWSSIRCFG 478 (729)
Q Consensus 402 l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~~~~~P~~l~-~l~~~~~-~~~~~l~sLr~v~ 478 (729)
+..+|+.|+.+.+.++.+|..|+++++.+. ..++..+++.|+++++|++.++|..+. .+.+... ....+++++|.++
T Consensus 223 ~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~ 302 (533)
T PRK07798 223 FPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIA 302 (533)
T ss_pred EEecchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999999999999873 357889999999999999999986553 3333221 2345678999999
Q ss_pred eecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCccccccccccc--CCCCCcEEEEEcCCCCccCCCCCceeE
Q 004815 479 STGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNVPGMGE 556 (729)
Q Consensus 479 ~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG--~p~~~~~~~v~d~~g~~~p~g~~giGe 556 (729)
+||+++++++.+++.+.+++.++++.||+||++.+........ ..+.| ++.++..++|+|+++++++.|..|.|+
T Consensus 303 ~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~---~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~ 379 (533)
T PRK07798 303 SGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG---AVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGW 379 (533)
T ss_pred ECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCC---CccCCCCccCCCceEEEECCCCCCCCCCCCCeeE
Confidence 9999999999999988887789999999999875443322211 12334 788999999999999999999876678
Q ss_pred EEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCC
Q 004815 557 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 636 (729)
Q Consensus 557 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~ 636 (729)
++.++...- .|+++++.++..|... .|.+||+|||+|++++||++++.||.|++||++|++|+|.|||++|. .+
T Consensus 380 l~~~~~~~~--gy~~~~~~t~~~f~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~ 453 (533)
T PRK07798 380 IARRGHIPL--GYYKDPEKTAETFPTI---DGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALK-AH 453 (533)
T ss_pred EEeecCccc--cccCChhhhHHhhccC---CCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHH-hC
Confidence 877654332 2466777787777652 36679999999999999999999999999999999999999999995 99
Q ss_pred CCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHH
Q 004815 637 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 716 (729)
Q Consensus 637 p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L 716 (729)
|.|.+|+|++.++...+ +.+++++++.+ +. ..+.+++++ .++++|++|++|..++++++||+|++||++|+.|
T Consensus 454 ~~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~~-~~~~~~l~~----~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~ 526 (533)
T PRK07798 454 PDVADALVVGVPDERWG-QEVVAVVQLRE-GA-RPDLAELRA----HCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWA 526 (533)
T ss_pred ccceeEEEEeccCcccC-ceEEEEEEECC-CC-CCCHHHHHH----HHhhhcccCCCCeEEEEcccCCCCCcchhhHHHH
Confidence 99999999999887766 78889988876 44 355566555 5778899999999999999999999999999999
Q ss_pred HHHHHh
Q 004815 717 RKQLAQ 722 (729)
Q Consensus 717 ~~~~~~ 722 (729)
++++++
T Consensus 527 ~~~~~~ 532 (533)
T PRK07798 527 KEQAAE 532 (533)
T ss_pred hhhhcc
Confidence 999864
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-65 Score=628.30 Aligned_cols=511 Identities=16% Similarity=0.157 Sum_probs=406.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.++++++++||++|+++..+ +++||+||+++++++|++|++ ++++||+|+++++|++++++++|||+++
T Consensus 617 l~~~~~~~a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~ 688 (1146)
T PRK08633 617 LAEAWIDTAKRNWSRLAVADSTG-------GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLA 688 (1146)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCC-------CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHc
Confidence 34556777889999999997432 289999999999999999987 5899999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC--CcEEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|++++|++|.++.+++.+++++++++++++++.......... ...... ..++.+...... ......+.+
T Consensus 689 G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 759 (1146)
T PRK08633 689 GKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKG----FDLELPENVKVIYLEDLKAK-----ISKVDKLTA 759 (1146)
T ss_pred CCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccC----CchhcccCceEEEeehhccc-----cchhHHHHH
Confidence 999999999999999999999999999999875322111000 000011 112222110000 000111222
Q ss_pred HHHHhhcccc--CccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH
Q 004815 337 FLERVRKLKE--NEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW 414 (729)
Q Consensus 337 ~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 414 (729)
.......... .........++++++++|||||||.||||+++|+++.+.+.+....++++++|++++.+|+.|..+..
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 839 (1146)
T PRK08633 760 LLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLT 839 (1146)
T ss_pred HHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHH
Confidence 1111000000 00001345689999999999999999999999999999888888888999999999999999999984
Q ss_pred -HHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHH
Q 004815 415 -LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 493 (729)
Q Consensus 415 -~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~ 493 (729)
.++.+++.|+++++.+...++..+++.++++++|++.++|++++.+.+.....+.+++++|.+++||+++++++.++++
T Consensus 840 ~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~ 919 (1146)
T PRK08633 840 VTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFE 919 (1146)
T ss_pred HHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHH
Confidence 4889999999999987667888999999999999999999999999886555566789999999999999999999998
Q ss_pred hccCCCCeeecccccccccccccCCccc---------ccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccc
Q 004815 494 GRALYKPVIEYCGGTEIGGGFITGSLLQ---------AQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLI 563 (729)
Q Consensus 494 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~---------~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~ 563 (729)
+.++ +++++.||+||++..++...... ....+++|+|+||++++|+|+ +++++|.|+. |||++++..
T Consensus 920 ~~~g-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--Gel~v~g~~ 996 (1146)
T PRK08633 920 EKFG-IRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGED--GLILIGGPQ 996 (1146)
T ss_pred HHhC-CCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCc--eEEEEcCCC
Confidence 7774 89999999999986544332211 124568999999999999995 6899999997 999996654
Q ss_pred cCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCC--Ceee
Q 004815 564 FGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVLE 641 (729)
Q Consensus 564 ~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p--~V~~ 641 (729)
+..+ |+++++.+++.|.+. +|++||+|||+|++|+||+++++||.||+||++|++|+|.|||++|. +|| .+.+
T Consensus 997 ~~~g-Y~~~~~~t~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~~~~~~ 1071 (1146)
T PRK08633 997 VMKG-YLGDPEKTAEVIKDI---DGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELA-KALGGEEVV 1071 (1146)
T ss_pred cccc-ccCCccchHHHhhcC---CCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHH-hccCCCCce
Confidence 4333 466788888777643 35679999999999999999999999999999999999999999995 898 5678
Q ss_pred eEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHH-hhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHH
Q 004815 642 TAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQ-KKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 720 (729)
Q Consensus 642 a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~ 720 (729)
|+|++++++..| +.++++++... .+.++++++ ++ +.+|+|++|..+++++++|+|++||+||++|+++.
T Consensus 1072 ~~v~~~~~~~~g-~~~~~~v~~~~-----~~~~~l~~~----~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~ 1141 (1146)
T PRK08633 1072 FAVTAVPDEKKG-EKLVVLHTCGA-----EDVEELKRA----IKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELA 1141 (1146)
T ss_pred EEEEeccCCCCC-cEEEEEEecCc-----cCHHHHHHH----HHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHH
Confidence 999999998887 78999888632 455666664 44 46999999999999999999999999999999987
Q ss_pred Hhhh
Q 004815 721 AQLD 724 (729)
Q Consensus 721 ~~~~ 724 (729)
.++.
T Consensus 1142 ~~~~ 1145 (1146)
T PRK08633 1142 LALL 1145 (1146)
T ss_pred HHhc
Confidence 7653
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=570.53 Aligned_cols=486 Identities=20% Similarity=0.186 Sum_probs=382.2
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGL-DKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv-~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
.++|.+++ +|+++|+++.+. ++||+||.++++++|..|.+.|+ ++||+|+++++|++++++++|||+++
T Consensus 6 ~~~l~~~~--~p~~~Al~~~~~--------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~ 75 (540)
T PRK13388 6 AQLLRDRA--GDDTIAVRYGDR--------TWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALG 75 (540)
T ss_pred HHHHHhhc--cCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhC
Confidence 34454443 799999998766 99999999999999999999999 89999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
|++++|+||.++.+++.+++++++++++|+++.... ....+. .+. .++.+. ...+.++
T Consensus 76 Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~------~~~~~~--~~~~~~i~~~-------------~~~~~~~ 134 (540)
T PRK13388 76 GYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRP------LLDGLD--LPGVRVLDVD-------------TPAYAEL 134 (540)
T ss_pred CCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhH------HHHhhc--ccCceEEEcc-------------chhhhhh
Confidence 999999999999999999999999999999875321 111110 111 111111 1123333
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHH-H
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL-V 416 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-i 416 (729)
+..... ..+.....++++++++|||||||.||||+++|+++.+........+++.++|+++..+|+.|..++.. +
T Consensus 135 ~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 210 (540)
T PRK13388 135 VAAAGA----LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGW 210 (540)
T ss_pred hccccC----cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHH
Confidence 321110 11222356799999999999999999999999999988888888899999999999999999988854 4
Q ss_pred HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
+.+|..|+++++.+. .++..+++.|+++++|++..+|+.+..++..........++++. .+ |+.+++....++.+.+
T Consensus 211 ~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~-~~-G~~~~~~~~~~~~~~~ 287 (540)
T PRK13388 211 APAVASGAAVALPAK-FSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRV-AF-GNEASPRDIAEFSRRF 287 (540)
T ss_pred HHHHHcCcEEEECCC-CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEE-EE-CCCCCHHHHHHHHHHh
Confidence 568999999988654 57788999999999999999999999988764322222345664 33 5566777777777666
Q ss_pred CCCCeeecccccccccccccCCcccccccccccCCCCCcEEE-----------EEcCCCCccC-CCCCceeEEEee-ccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLF-----------ILGNDGCPIP-QNVPGMGELALS-PLI 563 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~-----------v~d~~g~~~p-~g~~giGel~v~-~~~ 563 (729)
+++++|.||+||++.+++... ....+++|+|++|++++ ++|++|++++ .|. +|||++. +..
T Consensus 288 -~~~l~~~YG~tE~~~~~~~~~---~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~--~GEl~v~~g~~ 361 (540)
T PRK13388 288 -GCQVEDGYGSSEGAVIVVREP---GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEA--IGELVNTAGAG 361 (540)
T ss_pred -CCceecccccccccceeecCC---CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCc--ceEEEEecCCc
Confidence 488999999999986554321 12356899999998763 5666677663 344 4999995 544
Q ss_pred cCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeE
Q 004815 564 FGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETA 643 (729)
Q Consensus 564 ~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~ 643 (729)
+.. .|+++++.+++.|.. | ||+|||+|++++||+++++||+||+||++|++|+|.|||++|. .||+|.+|+
T Consensus 362 ~~~-gY~~~~~~t~~~~~~-----g--~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~ 432 (540)
T PRK13388 362 FFE-GYYNNPEATAERMRH-----G--MYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILL-RHPAINRVA 432 (540)
T ss_pred ccc-cccCChHHHHHHhhc-----C--ceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHH-hCCCceEEE
Confidence 332 245677777776631 3 9999999999999999999999999999999999999999995 899999999
Q ss_pred EEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 644 AIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 644 Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
|++++++..| +.+++++++.+ +. ..+.++++++++. +..|++|++|..++++++||+|++||++|++|+++..++
T Consensus 433 v~g~~~~~~g-~~~~~~v~~~~-~~-~~~~~~l~~~l~~--~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~ 507 (540)
T PRK13388 433 VYAVPDERVG-DQVMAALVLRD-GA-TFDPDAFAAFLAA--QPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWAT 507 (540)
T ss_pred EEEccCCCCC-ceeEEEEEECC-CC-cCCHHHHHHHHHh--hccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCC
Confidence 9999988777 67888888876 44 4566777776532 235999999999999999999999999999999987664
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=564.99 Aligned_cols=485 Identities=22% Similarity=0.176 Sum_probs=388.7
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
.++|++++ .+|++|+++.++ ++||+||.++++++|++|+++ |++++++|+++++|+++++++++||+++
T Consensus 8 ~~~l~~~a--~~~~~a~~~~~~--------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~ 77 (529)
T PRK07867 8 AELLLPLA--EDDDRGLYFEDS--------FTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALS 77 (529)
T ss_pred HHHHHHhc--ccCCceEEECCc--------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 35566665 379999998776 999999999999999999997 8999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
|++++|++|.++.+++.+++++++++++|+++.... ..+.+.....++.. ....|.+++
T Consensus 78 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~----------~~~~~~~~~~~~~~-----------~~~~~~~~l 136 (529)
T PRK07867 78 GIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAE----------LLDGLDPGVRVINV-----------DSPAWADEL 136 (529)
T ss_pred CCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHH----------HHHhhccCceEEEe-----------ccccHHHHh
Confidence 999999999999999999999999999999975321 11111111112211 011244433
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH-HHH
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LVY 417 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~i~ 417 (729)
..... .........++++++++|||||||.||||+++|+++..........++++++|+++...|++|..+++ .++
T Consensus 137 ~~~~~---~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~ 213 (529)
T PRK07867 137 AAHRD---AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWA 213 (529)
T ss_pred cccCC---CCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHH
Confidence 32111 11122345678999999999999999999999999998888888889999999999999999999884 466
Q ss_pred HHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccC
Q 004815 418 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 497 (729)
Q Consensus 418 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~ 497 (729)
.++..|+++++.+. .++..+++.++++++|++.++|+.+..++..........+++|. ++||+.+++.. .++.+.+
T Consensus 214 ~~l~~G~~~~~~~~-~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~- 289 (529)
T PRK07867 214 VALAAGASIALRRK-FSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRF- 289 (529)
T ss_pred HHHhcCceEEecCC-CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHh-
Confidence 78999999988753 57888999999999999999999999888764332233467884 56888887664 5555555
Q ss_pred CCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCC------------CceeEEEe-eccc
Q 004815 498 YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNV------------PGMGELAL-SPLI 563 (729)
Q Consensus 498 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~------------~giGel~v-~~~~ 563 (729)
++++++.||+||+++.+.... ....+++|.|+++ ++|+| +++++++.|+ . |||++ .+..
T Consensus 290 g~~l~~~YG~TE~~~~~~~~~---~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~--Gel~i~~g~~ 362 (529)
T PRK07867 290 GCVVVDGFGSTEGGVAITRTP---DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAI--GELVNTAGPG 362 (529)
T ss_pred CCcEEEeecccccccccccCC---CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcc--eEEEEecCCc
Confidence 488999999999986543221 1234678999999 77888 5688899887 5 99998 5543
Q ss_pred cCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeE
Q 004815 564 FGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETA 643 (729)
Q Consensus 564 ~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~ 643 (729)
+.. .|+++++.+...|.. | ||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+|+
T Consensus 363 ~~~-gy~~~~~~~~~~~~~-----g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~~~ 433 (529)
T PRK07867 363 GFE-GYYNDPEADAERMRG-----G--VYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILL-RYPDATEVA 433 (529)
T ss_pred ccc-cccCChHhhhhhhcC-----C--eEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHH-hCCCeeEEE
Confidence 322 245677777666631 3 9999999999999999999999999999999999999999995 899999999
Q ss_pred EEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 644 AIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 644 Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
|++++++..| ++++++++..+ +. ..+.+++++++++ +..|++|++|..|+++++||+|++||++|+.|+++..+.
T Consensus 434 V~g~~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~~~~~--~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~~ 508 (529)
T PRK07867 434 VYAVPDPVVG-DQVMAALVLAP-GA-KFDPDAFAEFLAA--QPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVDC 508 (529)
T ss_pred EEeccCCCCC-eeEEEEEEECC-CC-CCCHHHHHHHHHh--hccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCCC
Confidence 9999998887 88999999887 54 4677777776543 235999999999999999999999999999999987653
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=566.07 Aligned_cols=497 Identities=19% Similarity=0.204 Sum_probs=403.0
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++|+++|+++.+. .+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++
T Consensus 14 ~~~~~~~~~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~ 85 (524)
T PRK06188 14 YGHLLVSALKRYPDRPALVLGDT--------RLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLA 85 (524)
T ss_pred HHHHHHHHHHHCCCCeEEEECCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 34667778889999999999776 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|++++|++|.++.+++..++++++++.+++++... ............. ..+.+... ....+
T Consensus 86 G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 148 (524)
T PRK06188 86 GLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPF-----VERALALLARVPSLKHVLTLGPV------------PDGVD 148 (524)
T ss_pred CCEEEecccCCCHHHHHHHHHhcCceEEEEecchh-----hHHHHHHhhhcCCceEEEEeCCc------------cchhh
Confidence 99999999999999999999999999999987421 0111111111111 11111110 00111
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 416 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i 416 (729)
+............ .....++++++++|||||||.||+|+++|.++.+.+......+++..+|++++..|++|..+.. +
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~ 226 (524)
T PRK06188 149 LLAAAAKFGPAPL-VAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-F 226 (524)
T ss_pred HHHhhhccCcccc-cccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-H
Confidence 1111111011111 1122456799999999999999999999999999988888889999999999999999987764 5
Q ss_pred HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
+.++..|+++++.+. .++..+++.|+++++|++.++|+++..|++.......+++++|.+++||++++++....+.+.+
T Consensus 227 ~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~ 305 (524)
T PRK06188 227 LPTLLRGGTVIVLAK-FDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF 305 (524)
T ss_pred HHHHHcCCEEEEcCC-CCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh
Confidence 688999999999875 5788999999999999999999999999987665566789999999999999999888877666
Q ss_pred CCCCeeecccccccccccccCCcc-----cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLL-----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 571 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~-----~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~ 571 (729)
+ ..+++.||+||++.++...... ......++|+|++|+.++|+|+++++++.|+. |||++.+.....+ |++
T Consensus 306 ~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~--Gel~v~~~~~~~g-y~~ 381 (524)
T PRK06188 306 G-PIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEV--GEICVRGPLVMDG-YWN 381 (524)
T ss_pred C-chhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCe--eEEEEECcchhhh-hcC
Confidence 5 6799999999997654433221 22345689999999999999999999999987 9999976554432 355
Q ss_pred cccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCC
Q 004815 572 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 651 (729)
Q Consensus 572 ~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 651 (729)
+++.+...|. .| ||+|||+|++++||+++++||.|++||++|.+|+|.+||++|. .||+|.+++|++.+++.
T Consensus 382 ~~~~~~~~~~-----~g--~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~ 453 (524)
T PRK06188 382 RPEETAEAFR-----DG--WLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLA-EHPAVAQVAVIGVPDEK 453 (524)
T ss_pred ChHHhhhhhc-----CC--ceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHH-hCCCeeEEEEEeccCCC
Confidence 6666655553 13 9999999999999999999999999999999999999999995 99999999999998877
Q ss_pred CCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 652 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 652 ~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
.+ +.+++++++++ +. ..+.++++ +++++.+++|++|..|+++++||+|++||++|++|++++.+
T Consensus 454 ~~-~~~~~~v~~~~-~~-~~~~~~l~----~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~ 517 (524)
T PRK06188 454 WG-EAVTAVVVLRP-GA-AVDAAELQ----AHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWE 517 (524)
T ss_pred cC-ceEEEEEEECC-CC-CCCHHHHH----HHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHh
Confidence 76 78999999876 33 34444544 46778899999999999999999999999999999999854
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-64 Score=565.11 Aligned_cols=502 Identities=24% Similarity=0.301 Sum_probs=407.2
Q ss_pred cchHHhhhhccc-cCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Q 004815 175 FVNPAKNCLSVN-SKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL 253 (729)
Q Consensus 175 ~~~~~~~~l~~~-~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~L 253 (729)
.+|.++++++++ ++.+||++|++..+. .+||.||.++++++|++|.+.|+++|++|+++++|+++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 2 KYNAAEDLLDRNVVEGRGGKTAFIDDIS--------SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred cchHHHHHHHHHHhcccCCceEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 458899999887 577999999998766 89999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCc--EEEEcCCCCCcccccCCCC
Q 004815 254 AIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL--AIVIPAKGSSFSMKLRDGD 331 (729)
Q Consensus 254 A~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~ 331 (729)
||+++|++++|++|.++.+++.++++.++++++++++... +.+..+....+.. .+.+... . ...
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~-------~~~ 139 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVGRP-E-------AGE 139 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhH------HHHHHHHhcCCCccEEEEeCCC-C-------ccc
Confidence 9999999999999999999999999999999999987422 1122222222211 2222110 0 112
Q ss_pred cCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHH-HHhhCCCCCCCEEEEccCcchh
Q 004815 332 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD-AWCHMDIRKADIVAWPTNLGWM 410 (729)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~~~ 410 (729)
..+.++..... ....+....++++++++|||||||.||||+++|+++...+.. ....++++++|+++...|+.|+
T Consensus 140 ~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 215 (508)
T TIGR02262 140 VQLAELLATES----EQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFA 215 (508)
T ss_pred ccHHHHhhcCC----CccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHH
Confidence 23433332211 112223445789999999999999999999999999877654 4456789999999999999999
Q ss_pred hhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHH
Q 004815 411 MGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 489 (729)
Q Consensus 411 ~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~ 489 (729)
.++ ..++.++..|+++++.++..++..+++.|+++++|++.++|+++..+++.........+++|.+++||+++++++.
T Consensus 216 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~ 295 (508)
T TIGR02262 216 YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVG 295 (508)
T ss_pred HHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHH
Confidence 988 5677899999999998876788899999999999999999999998876543333446789999999999999999
Q ss_pred HHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcc
Q 004815 490 LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASST 569 (729)
Q Consensus 490 ~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~ 569 (729)
+.|.+.++ +++++.||+||++........ ......++|+|++|+.++|+|++++++|.|+. |||++++.....+ |
T Consensus 296 ~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~--Gel~i~~~~~~~g-Y 370 (508)
T TIGR02262 296 QRWQARFG-VDIVDGIGSTEMLHIFLSNLP-GDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEP--GELLISGPSSATM-Y 370 (508)
T ss_pred HHHHHHhC-CchhhCccccccCceeecCCc-cCCCCCCcCCCCCCcEEEEECCCCCCCCCCCe--eEEEEecCccccc-c
Confidence 88887764 789999999999865443322 22345689999999999999999999999997 9999966544332 4
Q ss_pred cccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecC
Q 004815 570 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 649 (729)
Q Consensus 570 ~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~ 649 (729)
+++++.++..|.. +||+|||++++++||.+++.||.||+||++|.+|+|.|||++|. .+|+|.++++++.++
T Consensus 371 ~~~~~~~~~~~~~-------~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~-~~~~v~~~~~~~~~~ 442 (508)
T TIGR02262 371 WNNRAKTRDTFQG-------EWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALI-QHPAVLEAAVVGVED 442 (508)
T ss_pred CCCHHHhHhhhhc-------CceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHH-hCCCeeEEEEEeccc
Confidence 5667776665531 39999999999999999999999999999999999999999995 899999999999887
Q ss_pred CCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHH
Q 004815 650 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 719 (729)
Q Consensus 650 ~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~ 719 (729)
...+ +.++++++..+ +. . ..+.+.+.+++.++++|++|++|..++.++++|+|++||++|++|+++
T Consensus 443 ~~~~-~~~~~~v~~~~-~~-~-~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 443 EDGL-IKPKAFIVLRP-GQ-D-IDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLREG 508 (508)
T ss_pred cCCC-ceeEEEEEeCC-CC-c-cccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence 7666 78889998876 32 1 123445567778999999999999999999999999999999998753
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=570.37 Aligned_cols=506 Identities=21% Similarity=0.229 Sum_probs=397.5
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|.++++++|+++|+++.++ .+||+||+++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus 24 ~i~~~l~~~a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~ 95 (557)
T PRK07059 24 SLADLLEESFRQYADRPAFICMGK--------AITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLR 95 (557)
T ss_pred CHHHHHHHHHHHcCCCceEEEcCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 355678888889999999999776 999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCc-------------
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSF------------- 323 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~------------- 323 (729)
+|++++|++|.++.+++.+++++++++++++++... .....+...... .+++........
T Consensus 96 ~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (557)
T PRK07059 96 AGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFA------TTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRV 169 (557)
T ss_pred cCeEEeccCcccCHHHHHHHHHccCceEEEEchhhH------HHHHHhhcccCCceeEEecccccccccccccccccccc
Confidence 999999999999999999999999999999987432 111111111111 111111100000
Q ss_pred ----ccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh----CCC
Q 004815 324 ----SMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH----MDI 395 (729)
Q Consensus 324 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~----~~~ 395 (729)
.....++...+.+.+.... ..........++++|+|+|||||||.||||+++|++++..+...... +..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~ 246 (557)
T PRK07059 170 KKMVPAWSLPGHVRFNDALAEGA---RQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEK 246 (557)
T ss_pred cccccccCCCCcccHHHHhhccC---CCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccc
Confidence 0000122334554443221 11222334568899999999999999999999999987665433221 111
Q ss_pred C---CCCEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCC
Q 004815 396 R---KADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDW 471 (729)
Q Consensus 396 ~---~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l 471 (729)
. ..+.++...|+.|.++. ...+.++..|++.++.++..++..+++.|+++++|.+..+|+++..+.........++
T Consensus 247 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~ 326 (557)
T PRK07059 247 KPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDF 326 (557)
T ss_pred cCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCc
Confidence 1 23467778899888775 4567888899998888765677889999999999999999999999988765555667
Q ss_pred CCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCC
Q 004815 472 SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNV 551 (729)
Q Consensus 472 ~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~ 551 (729)
+++|.++.||+++++.+.+++.+.+ ++++++.||+||++.+++...........++|+|++|++++|+|++|+++|.|+
T Consensus 327 ~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~ 405 (557)
T PRK07059 327 SKLIVANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGE 405 (557)
T ss_pred hhheEEEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCC
Confidence 8999999999999999988887665 489999999999987654443322234578999999999999999999999999
Q ss_pred CceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHH
Q 004815 552 PGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERI 631 (729)
Q Consensus 552 ~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~ 631 (729)
. |||++.+.....+ |+++++.+...|..+ | ||+|||+|++++||+++++||+||+||++|++|+|.|||++
T Consensus 406 ~--Gel~v~g~~~~~g-Y~~~~~~~~~~~~~~----g--~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~ 476 (557)
T PRK07059 406 P--GEICIRGPQVMAG-YWNRPDETAKVMTAD----G--FFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEV 476 (557)
T ss_pred c--eEEEEeCCccchh-hhcCHHHHhhhcccC----C--ceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHH
Confidence 7 9999965544332 355677776666432 2 99999999999999999999999999999999999999999
Q ss_pred HhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChh
Q 004815 632 CNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKV 711 (729)
Q Consensus 632 L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi 711 (729)
|. .||+|.+++|++.++...| +.++++++..+ . ..+.+++++ .+++.|++|++|..|.+++++|+|++||+
T Consensus 477 l~-~~~~V~~~~v~~~~~~~~g-e~~~~~v~~~~-~--~~~~~~l~~----~~~~~l~~~~~P~~i~~v~~~P~t~~GK~ 547 (557)
T PRK07059 477 VA-SHPGVLEVAAVGVPDEHSG-EAVKLFVVKKD-P--ALTEEDVKA----FCKERLTNYKRPKFVEFRTELPKTNVGKI 547 (557)
T ss_pred HH-hCCceeEEEEEecccCCCC-eeEEEEEEeCC-C--CCCHHHHHH----HHHHhcccccCCcEEEEeccCCCCcccce
Confidence 95 9999999999999888777 78899888665 2 244455444 57788999999999999999999999999
Q ss_pred hHHHHHHH
Q 004815 712 MRRVLRKQ 719 (729)
Q Consensus 712 dR~~L~~~ 719 (729)
+|+.|+++
T Consensus 548 ~r~~L~~~ 555 (557)
T PRK07059 548 LRRELRDG 555 (557)
T ss_pred eHHHHHhh
Confidence 99999864
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=566.97 Aligned_cols=509 Identities=18% Similarity=0.178 Sum_probs=397.9
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|.++++++|+++|++..+. ++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++
T Consensus 12 l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~ 83 (540)
T PRK06164 12 LASLLDAHARARPDAVALIDEDR--------PLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARL 83 (540)
T ss_pred HHHHHHHHHHhCCCCeEEecCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 45677888899999999997655 8999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhh----cC--CcEEEEcCCCCCcccccCCCCc
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA----QA--PLAIVIPAKGSSFSMKLRDGDI 332 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~i~~~~~~~~~~~~~~~~ 332 (729)
|++++|+++.++.+++.+++++++++++|++++.. .+.....+... .. ..++++....... .. ....
T Consensus 84 G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~ 156 (540)
T PRK06164 84 GATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFK----GIDFAAILAAVPPDALPPLRAIAVVDDAADAT--PA-PAPG 156 (540)
T ss_pred CcEEEecCCCCCcHHHHHHHHhcCccEEEEccccc----cccHHHHhhcccccccCCcceEEEeccCcccC--CC-CCcc
Confidence 99999999999999999999999999999987532 11111111110 00 1222222111000 00 0000
Q ss_pred CHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhh
Q 004815 333 SWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMG 412 (729)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 412 (729)
.+.....................++++++++|||||||+||||+++|+++.+.+......+++.+++++++.+|++|.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 236 (540)
T PRK06164 157 ARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFG 236 (540)
T ss_pred cccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHH
Confidence 11111110000000000012235689999999999999999999999999998888888899999999999999999999
Q ss_pred HHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeec-CCCCHhHHHH
Q 004815 413 PWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG-EASNVDEYLW 491 (729)
Q Consensus 413 ~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gG-e~l~~~~~~~ 491 (729)
+..++.++..|+++++.+ ..++..+++.|+++++|+++.+|+++..|.+.. ....++++++.+.++| .....+..++
T Consensus 237 ~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~ 314 (540)
T PRK06164 237 FSTLLGALAGGAPLVCEP-VFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAAL 314 (540)
T ss_pred HHHHHHHHhcCceEEecC-CCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHH
Confidence 988999999999999875 367788999999999999999999999998762 3455688999887776 4455556666
Q ss_pred HHhccCCCCeeecccccccccccccCCccc--ccccccccCCC-CCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCC
Q 004815 492 LMGRALYKPVIEYCGGTEIGGGFITGSLLQ--AQSLAAFSTPA-MGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGAS 567 (729)
Q Consensus 492 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~-~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~ 567 (729)
+... ++++++.||+||++..++...... .....+.|.|+ +++.++|+| +++++++.|+. |||+|++..+..+
T Consensus 315 ~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~g 390 (540)
T PRK06164 315 ARAR--GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGES--GEIEIRAPSLMRG 390 (540)
T ss_pred Hhhc--CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCe--eEEEEeccccccc
Confidence 6544 588999999999987655443322 12234568876 899999999 56889999986 9999966554433
Q ss_pred cccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEee
Q 004815 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 647 (729)
Q Consensus 568 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~ 647 (729)
|+++++.++..|..+ .||+|||+|++++||++++.||.||+||++|.+|+|.|||++|. .||+|.+++|+++
T Consensus 391 -Y~~~~~~t~~~~~~~------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~-~~~~v~~~~v~~~ 462 (540)
T PRK06164 391 -YLDNPDATARALTDD------GYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALE-ALPGVAAAQVVGA 462 (540)
T ss_pred -ccCCchhhhhcccCC------CceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHH-hCCCceeEEEEec
Confidence 467888888777643 29999999999999999999999999999999999999999995 9999999999998
Q ss_pred cCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCC---hhhHHHHHHHHHhhh
Q 004815 648 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATN---KVMRRVLRKQLAQLD 724 (729)
Q Consensus 648 ~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~G---KidR~~L~~~~~~~~ 724 (729)
+. .++ ..+++++++.+ +. ..+.+++++ +++++||+|++|..|++++++|+|++| |++|+.|+++++++.
T Consensus 463 ~~-~~~-~~~~~~vv~~~-~~-~~~~~~l~~----~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~ 534 (540)
T PRK06164 463 TR-DGK-TVPVAFVIPTD-GA-SPDEAGLMA----ACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARL 534 (540)
T ss_pred CC-CCc-eeEEEEEEeCC-CC-CCCHHHHHH----HHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhh
Confidence 74 333 68999999876 43 345555555 577889999999999999999999999 999999999988744
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=569.94 Aligned_cols=506 Identities=19% Similarity=0.201 Sum_probs=398.1
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN-ALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
..+.|.++++++|+++|+++.++ ++||+||.++++++|+.|. +.|+++||+|+++++|++++++++|||++
T Consensus 27 ~~~~l~~~~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 98 (560)
T PRK08751 27 VAEVFATSVAKFADRPAYHSFGK--------TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLR 98 (560)
T ss_pred HHHHHHHHHHhCCCCceEEECCc--------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 45677888889999999998766 9999999999999999997 68999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCC---------------
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSS--------------- 322 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------- 322 (729)
+|++++|++|.++.+++.+++++++++++++++... ..........+...+++......
T Consensus 99 ~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (560)
T PRK08751 99 AGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFG------TTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKY 172 (560)
T ss_pred hCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhH------HHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhh
Confidence 999999999999999999999999999999987532 11111111111111111100000
Q ss_pred ----cccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCC----
Q 004815 323 ----FSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD---- 394 (729)
Q Consensus 323 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~---- 394 (729)
......++...+.+....... ...+.....++++++++|||||||.||||+++|+++...+.+....++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 249 (560)
T PRK08751 173 VKKLVPEYRINGAIRFREALALGRK---HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249 (560)
T ss_pred hhccccccCCCccccHHHHHhccCC---CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccc
Confidence 000001122334444332111 112223456789999999999999999999999999887776655443
Q ss_pred CCCC-CEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCC
Q 004815 395 IRKA-DIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWS 472 (729)
Q Consensus 395 ~~~~-d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~ 472 (729)
+.++ ++++...++.|.++. ...+.++..|++.++.....++..+++.|+++++|++..+|+++..+.+.......+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~ 329 (560)
T PRK08751 250 LEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFS 329 (560)
T ss_pred cCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchh
Confidence 3344 566777888888886 34567788888888877666788899999999999999999999999887655556788
Q ss_pred CccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCC
Q 004815 473 SIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVP 552 (729)
Q Consensus 473 sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~ 552 (729)
+||.+++||+++++.+.+.+.+.+ ++++++.||+||++..++..........+++|.|+++++++|+|++|++++.|+.
T Consensus 330 ~lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~ 408 (560)
T PRK08751 330 SLKMTLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEI 408 (560)
T ss_pred hheeeeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCCc
Confidence 999999999999999988887765 4789999999999875544332223345689999999999999999999999986
Q ss_pred ceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHH
Q 004815 553 GMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632 (729)
Q Consensus 553 giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L 632 (729)
|||+|.+..+..+ |+++++.++.+|.. ..||+|||+|++++||+++++||.||+||++|++|+|.|||++|
T Consensus 409 --Gel~v~~~~~~~g-y~~~~~~~~~~~~~------~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l 479 (560)
T PRK08751 409 --GELCIKGPQVMKG-YWKRPEETAKVMDA------DGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVI 479 (560)
T ss_pred --eEEEEecCccchh-hcCChhhhhhcccc------CCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHH
Confidence 9999965544332 45677777777743 23999999999999999999999999999999999999999999
Q ss_pred hcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhh
Q 004815 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712 (729)
Q Consensus 633 ~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKid 712 (729)
. .||+|.+|+|+++++...| +.++++++... . ..+.+++++ .++++|++|++|..|+++++||+|++||++
T Consensus 480 ~-~~~~v~~~~v~~~~~~~~g-e~~~~~v~~~~-~--~~~~~~l~~----~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~ 550 (560)
T PRK08751 480 A-MMPGVLEVAAVGVPDEKSG-EIVKVVIVKKD-P--ALTAEDVKA----HARANLTGYKQPRIIEFRKELPKTNVGKIL 550 (560)
T ss_pred H-hCcCeeeeEEEecCCCCCC-ceEEEEEEcCC-C--CCCHHHHHH----HHHHhhhhccCCeEEEEhhhCCCCcccccc
Confidence 5 9999999999999987777 67777777554 2 245555555 577889999999999999999999999999
Q ss_pred HHHHHHHH
Q 004815 713 RRVLRKQL 720 (729)
Q Consensus 713 R~~L~~~~ 720 (729)
|++|++..
T Consensus 551 r~~L~~~~ 558 (560)
T PRK08751 551 RRELRDAA 558 (560)
T ss_pred HHHHHHhh
Confidence 99998763
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=568.81 Aligned_cols=509 Identities=20% Similarity=0.238 Sum_probs=396.1
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++|+++|+++.++ .+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 26 ~~~~~~~~a~~~p~~~a~~~~~~--------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (563)
T PRK06710 26 LHKYVEQMASRYPEKKALHFLGK--------DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLA 97 (563)
T ss_pred HHHHHHHHHHHCCCceEEEecCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 45667778889999999999776 8999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcc--------------
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFS-------------- 324 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------- 324 (729)
|++++|++|.++.+++.++++.++++++++++...... ..+........+++........
T Consensus 98 G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (563)
T PRK06710 98 GGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRV------TNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQ 171 (563)
T ss_pred CeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhh------hccchhhccceeEEeccccccccccccccchhhccc
Confidence 99999999999999999999999999999987532111 1111111111111110000000
Q ss_pred --cccC---CC-CcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHh-hCCCCC
Q 004815 325 --MKLR---DG-DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC-HMDIRK 397 (729)
Q Consensus 325 --~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~ 397 (729)
.... .. ...|.++.... ..........++++||++|||||||.||||+++|+++......... .++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 247 (563)
T PRK06710 172 SNLVVKVSESETIHLWNSVEKEV----NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKE 247 (563)
T ss_pred ccccccccccchhhhhhhhhhcc----ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCC
Confidence 0000 00 00122111100 0011111124578999999999999999999999998755433322 234444
Q ss_pred -CCEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCcc
Q 004815 398 -ADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 475 (729)
Q Consensus 398 -~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr 475 (729)
++++++..|+.|.++. ..++.++..|+++++.+. .++..+++.|+++++|++.++|+++..++........+++++|
T Consensus 248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr 326 (563)
T PRK06710 248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK-FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIR 326 (563)
T ss_pred CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC-CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhh
Confidence 4578889999998887 446678999999999763 5778899999999999999999999999876544455678999
Q ss_pred EEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCce
Q 004815 476 CFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGM 554 (729)
Q Consensus 476 ~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~gi 554 (729)
.+++||+++++++.+++.+.+ +.++++.||+||++..+...........+++|+|.+++.++|+| ++++++|.|..
T Consensus 327 ~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~-- 403 (563)
T PRK06710 327 ACISGSAPLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEI-- 403 (563)
T ss_pred heeeCCCcCCHHHHHHHHHhh-CCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCCc--
Confidence 999999999999998887665 47899999999998754333222233456899999999999999 67899999987
Q ss_pred eEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhc
Q 004815 555 GELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 634 (729)
Q Consensus 555 Gel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~ 634 (729)
|||++.+..+..+ |+++++.+...|. .| ||+|||+|++++||+++++||.||+||++|.+|+|.|||++|.
T Consensus 404 Gel~v~g~~~~~g-Y~~~~~~~~~~~~-----~g--~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~- 474 (563)
T PRK06710 404 GEIVVKGPQIMKG-YWNKPEETAAVLQ-----DG--WLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLY- 474 (563)
T ss_pred eEEEEecCccchh-hhCChHHHhhhcc-----cC--cccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHH-
Confidence 9999966554433 3566777766663 13 9999999999999999999999999999999999999999995
Q ss_pred CCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHH
Q 004815 635 VDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714 (729)
Q Consensus 635 ~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~ 714 (729)
.||.|.+|+|++.+++..| +.++++++..+ +. ..+.+++++ +++++|++|++|..|+++++||+|++||++|+
T Consensus 475 ~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~ 547 (563)
T PRK06710 475 EHEKVQEVVTIGVPDPYRG-ETVKAFVVLKE-GT-ECSEEELNQ----FARKYLAAYKVPKVYEFRDELPKTTVGKILRR 547 (563)
T ss_pred hCcceeeEEEEccccCCcC-ceeEEEEEECC-CC-CCCHHHHHH----HHHHhcccccCCcEEEEcccCCCCccchhhHH
Confidence 9999999999999988777 78999999877 44 345555555 57788999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 004815 715 VLRKQLAQLDQ 725 (729)
Q Consensus 715 ~L~~~~~~~~~ 725 (729)
+|+++.....+
T Consensus 548 ~L~~~~~~~~~ 558 (563)
T PRK06710 548 VLIEEEKRKNE 558 (563)
T ss_pred HHHHHHhhcCc
Confidence 99998876544
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=564.37 Aligned_cols=515 Identities=19% Similarity=0.182 Sum_probs=399.6
Q ss_pred CCcCCCCcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Q 004815 168 GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (729)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (729)
..|..........++|.++++++|+++|+++.++ ++||.||+++++++|++|.+.|+++||+|+++++|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~ 83 (541)
T TIGR03205 12 VRWDATIARGTLPDLLSKAAADYGPRPALEFRDR--------PITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPD 83 (541)
T ss_pred CCcccCCCCCCHHHHHHHHHHHcCCCceEEECCc--------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChH
Confidence 4465333444566778888899999999998776 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhh-cCCcEEEEcCCCCC-c--
Q 004815 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA-QAPLAIVIPAKGSS-F-- 323 (729)
Q Consensus 248 ~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~-- 323 (729)
+++++|||+++|++++|++|.++.+++.+++++++++.+++++.. ...+...+..+. .....+++...... .
T Consensus 84 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (541)
T TIGR03205 84 HPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLA----ALLPMALKFLEKGLLDRLIVCEDDNWGKVGT 159 (541)
T ss_pred HHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCch----hhhHHHHHhhhcccceEEEEecccccccccc
Confidence 999999999999999999999999999999999999999998631 011111111111 11122222211100 0
Q ss_pred ---ccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHh-----hCCC
Q 004815 324 ---SMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC-----HMDI 395 (729)
Q Consensus 324 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~-----~~~~ 395 (729)
..........+++++..... ........++++++++|||||||.||||+++|+++.+....... .+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~ 235 (541)
T TIGR03205 160 PQAPIPADPRIVTYADFVKGAAA----PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATR 235 (541)
T ss_pred cccccCCCcccccHHHHHhcCCC----CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccC
Confidence 00011123456665542211 11122356789999999999999999999999998765443211 1122
Q ss_pred CCCCEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCc
Q 004815 396 RKADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 474 (729)
Q Consensus 396 ~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sL 474 (729)
...+++++..++.|..+. ..++.++..|+++++.. ..++..+++.|+++++|++.++|+++..|.+.......+++++
T Consensus 236 ~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l 314 (541)
T TIGR03205 236 GDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQ-RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSL 314 (541)
T ss_pred CCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCcccc
Confidence 345789999999998887 45788999999988875 4678899999999999999999999999887544445567899
Q ss_pred cEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEE--cCCCCccCCCCC
Q 004815 475 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFIL--GNDGCPIPQNVP 552 (729)
Q Consensus 475 r~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~--d~~g~~~p~g~~ 552 (729)
|.+++||++++++..+++.+.+ +.++++.||+||++..++...........++|.|++++.++|+ |+++++++.|+.
T Consensus 315 ~~i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~ 393 (541)
T TIGR03205 315 ATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEV 393 (541)
T ss_pred ceEEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCe
Confidence 9999999999999988887655 4889999999999876554433333345689999999998875 577899999986
Q ss_pred ceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHH
Q 004815 553 GMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632 (729)
Q Consensus 553 giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L 632 (729)
|||++++..+..+ |+++++.+++.|.. + ||+|||++++++||+++++||.||+||++|++|+|.|||++|
T Consensus 394 --Gel~v~~~~~~~g-y~~~~~~~~~~~~~-----~--~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l 463 (541)
T TIGR03205 394 --GELRIRGPNVTRG-YWNRPEESAEAFVG-----D--RFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAI 463 (541)
T ss_pred --eEEEEecCCcccc-ccCChhhhHhhhcc-----C--CcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHH
Confidence 9999965544332 35667777766642 2 899999999999999999999999999999999999999999
Q ss_pred hcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhh
Q 004815 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712 (729)
Q Consensus 633 ~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKid 712 (729)
. .||+|.+++|++++++..+ +.++++++++. +....+.++++ ++++++|++|++|..|+++++||+|++||++
T Consensus 464 ~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~l~----~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~ 536 (541)
T TIGR03205 464 Y-EHPGVQEVIVIGIPDQYRG-EAAKAFVKLRP-GAKPFSLDELR----AFLAGKLGKHELPVAVEFVDELPRTPVGKLS 536 (541)
T ss_pred H-hCCCeeeEEEEecCCcccC-ceEEEEEEECC-CCCcCCHHHHH----HHHHhhcccccCCcEEEEeccCCCCccccee
Confidence 5 8999999999999987766 78999999876 32123444444 4678899999999999999999999999999
Q ss_pred HHHHH
Q 004815 713 RRVLR 717 (729)
Q Consensus 713 R~~L~ 717 (729)
|++|+
T Consensus 537 r~~l~ 541 (541)
T TIGR03205 537 RHELR 541 (541)
T ss_pred HhhcC
Confidence 99874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-63 Score=565.09 Aligned_cols=519 Identities=18% Similarity=0.188 Sum_probs=402.4
Q ss_pred cCCCCcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Q 004815 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSV 249 (729)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~v 249 (729)
|++....+ ..+.|.++++.+|+++|+.+.+. .+||.||+++++++|++|.++|+++|++|+++++|+++++
T Consensus 27 ~~~~~~~~-l~~~l~~~a~~~p~~~al~~~~~--------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~ 97 (567)
T PRK06178 27 EYPHGERP-LTEYLRAWARERPQRPAIIFYGH--------VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFH 97 (567)
T ss_pred CCCcCccc-HHHHHHHHHHHCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHH
Confidence 55555544 44667778888999999998776 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcC-CCCCc---cc
Q 004815 250 VIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPA-KGSSF---SM 325 (729)
Q Consensus 250 v~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~---~~ 325 (729)
++++||+++|++++|++|.++..++.+++++++++++++++... +.+.++.+......+++.. .+... ..
T Consensus 98 ~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~------~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 171 (567)
T PRK06178 98 IVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAEPTL 171 (567)
T ss_pred HHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchH------HHHHHhhccCCcceEEEecccccccccccc
Confidence 99999999999999999999999999999999999999987532 1222222222222222211 11000 00
Q ss_pred ccC-------CCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHh-hCCCCC
Q 004815 326 KLR-------DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC-HMDIRK 397 (729)
Q Consensus 326 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~ 397 (729)
... .....+.++...... .+.........++++|+++|||||||.||||+++|+++......... ...+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~ 250 (567)
T PRK06178 172 PLPDSLRAPRLAAAGAIDLLPALRA-CTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGE 250 (567)
T ss_pred ccccccccccccccccccHHHHhhc-cccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCC
Confidence 000 001122233322211 11111223456899999999999999999999999998876544433 366789
Q ss_pred CCEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccE
Q 004815 398 ADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRC 476 (729)
Q Consensus 398 ~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~ 476 (729)
+|+++..+|++|.++. ..++.+|.+|+++++.++ .++..++..|+++++|.+..+|..+..+.+.......++++++.
T Consensus 251 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~-~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~ 329 (567)
T PRK06178 251 DSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLAR-WDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQ 329 (567)
T ss_pred CcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCC-CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchhee
Confidence 9999999999999887 568889999999999874 67889999999999999999999999888765444556778887
Q ss_pred EEe--ecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCc--cc----ccccccccCCCCCcEEEEEc-CCCCcc
Q 004815 477 FGS--TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL--LQ----AQSLAAFSTPAMGCKLFILG-NDGCPI 547 (729)
Q Consensus 477 v~~--gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~--~~----~~~~~~iG~p~~~~~~~v~d-~~g~~~ 547 (729)
+.. +|+.++++..+++...++...+.+.||+||++..++.... .. ....+++|+|++|++++|+| ++++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~ 409 (567)
T PRK06178 330 VRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELL 409 (567)
T ss_pred eeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcC
Confidence 654 4589999999888877664444468999998764333211 11 12345799999999999999 669999
Q ss_pred CCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHH
Q 004815 548 PQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVE 627 (729)
Q Consensus 548 p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~e 627 (729)
+.|+. |||++.+..+..+ |+++++.++..|. +| ||+|||+|++++||+++++||+||+||++|++|+|.|
T Consensus 410 ~~g~~--Gel~v~g~~v~~g-Y~~~~~~~~~~~~-----dg--~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~e 479 (567)
T PRK06178 410 PLGAE--GEIVVRTPSLLKG-YWNKPEATAEALR-----DG--WLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSE 479 (567)
T ss_pred CCCCc--eEEEEECCccccc-ccCChhhhhhccc-----CC--ceeecceEEEecCCeEEEEecccccEEECCEEECHHH
Confidence 99986 9999966554332 4566776766653 24 9999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCC
Q 004815 628 IERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTA 707 (729)
Q Consensus 628 IE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 707 (729)
||++|. .+|+|.+++|++.++...| +.++++|++++ +. ..+.+++++ .++++|++|++|. +++++++|+|+
T Consensus 480 iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~-i~~v~~iP~t~ 550 (567)
T PRK06178 480 VEALLG-QHPAVLGSAVVGRPDPDKG-QVPVAFVQLKP-GA-DLTAAALQA----WCRENMAVYKVPE-IRIVDALPMTA 550 (567)
T ss_pred HHHHHH-hCCCeeEEEEEcCcCcccC-cceEEEEEeCC-CC-cCCHHHHHH----HHHhcCcccCCce-EEEeccCCCCC
Confidence 999994 9999999999999887777 78999999876 43 345555555 5778899999996 88899999999
Q ss_pred CChhhHHHHHHHHHhhh
Q 004815 708 TNKVMRRVLRKQLAQLD 724 (729)
Q Consensus 708 ~GKidR~~L~~~~~~~~ 724 (729)
+||++|++|++++++++
T Consensus 551 ~GKv~r~~l~~~~~~~~ 567 (567)
T PRK06178 551 TGKVRKQDLQALAEELK 567 (567)
T ss_pred ccceeHHHHHHHHHhhC
Confidence 99999999999998753
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-63 Score=557.47 Aligned_cols=473 Identities=20% Similarity=0.220 Sum_probs=379.5
Q ss_pred hhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Q 004815 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (729)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa 260 (729)
..|.++++++||++|+++.+. .+||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus 39 ~~~~~~a~~~p~~~a~~~~~~--------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~ 110 (516)
T PRK13383 39 TLLAVTAARWPGRTAIIDDDG--------ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGA 110 (516)
T ss_pred HHHHHHHHHCCCCcEEEeCCC--------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCe
Confidence 346677788999999998665 899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHH
Q 004815 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 340 (729)
Q Consensus 261 ~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 340 (729)
+++|++|.++.+++.+++++++++++++++.... .+. ........+... . .. ..
T Consensus 111 v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~-~~~~~~~~~~~~-----------~---~~--~~ 164 (516)
T PRK13383 111 DVVPISTEFRSDALAAALRAHHISTVVADNEFAE---------RIA-GADDAVAVIDPA-----------T---AG--AE 164 (516)
T ss_pred EEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHH---------HHH-hhhcceEEeccc-----------h---hh--hh
Confidence 9999999999999999999999999999875321 111 111122222110 0 00 00
Q ss_pred hhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHH--HHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHH
Q 004815 341 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK--AAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418 (729)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~--~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~ 418 (729)
. ....+...++.++++|||||||+||||+++|..... ........+++.++|+++...|+.|.++...++.
T Consensus 165 ~-------~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~ 237 (516)
T PRK13383 165 E-------SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLML 237 (516)
T ss_pred c-------CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHH
Confidence 0 000112345678999999999999999999984322 2222334567889999999999999999988888
Q ss_pred HhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC--CCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 419 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 419 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
++..|+++++.. ..++..+++.++++++|.+.++|+++..|.+.... ...+++++|.+++||+++++++.+++.+.+
T Consensus 238 ~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 316 (516)
T PRK13383 238 TIALGGTVLTHR-HFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY 316 (516)
T ss_pred HHhcCCEEEECC-CCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 999999998765 46788899999999999999999999999865421 233578999999999999999999988877
Q ss_pred CCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY 576 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~ 576 (729)
+ .++++.||+||++..+............++|+|++|++++|+|++|++++.|+. |||++.+......| ++++.
T Consensus 317 g-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~~Y-~~~~~-- 390 (516)
T PRK13383 317 G-DILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVT--GRIFVGGELAGTRY-TDGGG-- 390 (516)
T ss_pred C-chhhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCc--eEEEEecCcccccc-cCCch--
Confidence 5 789999999999865443332222345689999999999999999999999987 99999655443322 22211
Q ss_pred ccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCcee
Q 004815 577 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQ 656 (729)
Q Consensus 577 ~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 656 (729)
..+ .+| ||+|||+|++++||++++.||.||+||++|++|+|.|||++|. +||.|.+++|++.++...| +.
T Consensus 391 -~~~-----~~g--~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~g-~~ 460 (516)
T PRK13383 391 -KAV-----VDG--MTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALA-AHPAVADNAVIGVPDERFG-HR 460 (516)
T ss_pred -hhe-----ecC--ceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-ce
Confidence 111 123 9999999999999999999999999999999999999999995 9999999999999887777 78
Q ss_pred EEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 657 LTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 657 l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
++++|+.++ +. ..+.+++++ .++++|++|++|..|+++++||+|++||++|++|+
T Consensus 461 ~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 461 LAAFVVLHP-GS-GVDAAQLRD----YLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred EEEEEEECC-CC-CCCHHHHHH----HHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 999999876 43 344455544 57788999999999999999999999999999985
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-63 Score=552.76 Aligned_cols=456 Identities=21% Similarity=0.184 Sum_probs=378.0
Q ss_pred CCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCC
Q 004815 188 KRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIAD 267 (729)
Q Consensus 188 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp 267 (729)
++.++++|+++.++ ++||+||.++++++|..|+ ++|+|+++++|++++++++|||+++|++++|++|
T Consensus 11 ~~~~~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~ 77 (471)
T PRK07787 11 AAADIADAVRIGGR--------VLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPP 77 (471)
T ss_pred cccCCceEEEeCCc--------EEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCC
Confidence 56899999999877 9999999999999999996 5799999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccC
Q 004815 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKEN 347 (729)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (729)
.++.+++.++++++++++++++.... .. ..+...+.. ....|
T Consensus 78 ~~~~~~l~~~l~~~~~~~il~~~~~~--~~----------~~~~~~~~~-------------~~~~~------------- 119 (471)
T PRK07787 78 DSGVAERRHILADSGAQAWLGPAPDD--PA----------GLPHVPVRL-------------HARSW------------- 119 (471)
T ss_pred CCChHHHHHHHHhcCCCEEEecCCcc--cc----------cccceeeec-------------ccccc-------------
Confidence 99999999999999999999976310 00 000000000 00000
Q ss_pred ccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceE
Q 004815 348 EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASI 426 (729)
Q Consensus 348 ~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~l 426 (729)
.......++++++++|||||||.||||+++|+++...+......+++.++|++++.+|+.|..++ ..++.++..|+++
T Consensus 120 -~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 198 (471)
T PRK07787 120 -HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRF 198 (471)
T ss_pred -ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEE
Confidence 01112457899999999999999999999999999988887788899999999999999999887 4688999999999
Q ss_pred EEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeeccc
Q 004815 427 ALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 506 (729)
Q Consensus 427 vl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 506 (729)
++.+. .++..+++.|+ +++|++..+|+++..|.+... ....++++|.+++||+++++...+++.+.++ .++++.||
T Consensus 199 ~~~~~-~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG 274 (471)
T PRK07787 199 VHTGR-PTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-AARALRGARLLVSGSAALPVPVFDRLAALTG-HRPVERYG 274 (471)
T ss_pred EecCC-CCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-ccccccceeEEEECCCCCCHHHHHHHHHHcC-CCeecccC
Confidence 98754 67889999999 999999999999999887532 2345789999999999999999998887664 78999999
Q ss_pred ccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCC-CCCceeEEEeeccccCCCcccccccccccccccccC
Q 004815 507 GTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQ-NVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPS 585 (729)
Q Consensus 507 ~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~-g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~ 585 (729)
+||++..++.. ........++|+|++|++++|+|+++++++. |.. +|||++.+.....+ |+++++.++..|..+
T Consensus 275 ~tE~~~~~~~~-~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~-~Gei~v~g~~~~~g-y~~~~~~t~~~~~~~-- 349 (471)
T PRK07787 275 MTETLITLSTR-ADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGET-VGELQVRGPTLFDG-YLNRPDATAAAFTAD-- 349 (471)
T ss_pred ccccCcceecC-CCCcccCCcccccCCCcEEEEECCCCCCCCCCCCC-ceEEEEECcccchh-hcCChhhchhcccCC--
Confidence 99998643332 2223345689999999999999999999873 431 49999966544433 456777787777643
Q ss_pred CCCceeEEeCceEEEecCceEEEEccc-CCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEec
Q 004815 586 RNGQILRRHGDVFERTSGGYYRAHGRA-DDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFK 664 (729)
Q Consensus 586 ~~g~~~y~TGDl~~~~~dG~l~~~GR~-d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~ 664 (729)
.||+|||+|++++||+++++||. |++||++|.+|+|.|||++|. .+|.|.+++|++.++...+ +.+++|++..
T Consensus 350 ----~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~v~~~ 423 (471)
T PRK07787 350 ----GWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALL-GHPGVREAAVVGVPDDDLG-QRIVAYVVGA 423 (471)
T ss_pred ----CceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHH-hCCCcceEEEEcccccccC-eEEEEEEEeC
Confidence 29999999999999999999996 899999999999999999995 8999999999999887766 8999999985
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHH
Q 004815 665 DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718 (729)
Q Consensus 665 ~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~ 718 (729)
+ ..+.+++.+ .++++|++|++|..|+++++||+|++||++|++|++
T Consensus 424 ~----~~~~~~l~~----~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 424 D----DVAADELID----FVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred C----CCCHHHHHH----HHHhhcccccCCcEEEEeccCCCCCCccccHHHhcc
Confidence 4 345555555 577889999999999999999999999999999975
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=560.80 Aligned_cols=517 Identities=19% Similarity=0.205 Sum_probs=395.5
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
...|.++++.+|+++|+++.+. ++||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 23 ~~~~~~~~~~~p~~~a~~~~~~--------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G 94 (567)
T PLN02479 23 LWFLERAAVVHPTRKSVVHGSV--------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAG 94 (567)
T ss_pred HHHHHHHHhhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCC
Confidence 3556777888999999998665 89999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhc---------CCcEEEEcCCCCCc---cccc
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ---------APLAIVIPAKGSSF---SMKL 327 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~---~~~~ 327 (729)
++++|++|.++.+++.+++++++++++++++... +....+...+ ...++++....... ....
T Consensus 95 ~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (567)
T PLN02479 95 AVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFF------TLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYAL 168 (567)
T ss_pred cEEEEeccccCHHHHHHHHhhcCceEEEEchhhh------hHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccc
Confidence 9999999999999999999999999999987532 1112211111 11233332211100 0011
Q ss_pred CCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCc
Q 004815 328 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNL 407 (729)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 407 (729)
..+...|.+++..... ..........+++++++|||||||.||||+++|+++..........+++++++++++.+|+
T Consensus 169 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 245 (567)
T PLN02479 169 GKGAIEYEKFLETGDP---EFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPM 245 (567)
T ss_pred ccCcccHHHHHhcccc---ccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecch
Confidence 1234456666543211 0011112234567889999999999999999999987666655567788999999999999
Q ss_pred chhhhHHHH-HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCC-CCCCCccEEEeecCCCC
Q 004815 408 GWMMGPWLV-YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDG-YDWSSIRCFGSTGEASN 485 (729)
Q Consensus 408 ~~~~~~~~i-~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~-~~l~sLr~v~~gGe~l~ 485 (729)
+|..+.... +.++..|.++++ . ..++..+++.++++++|++..+|++++.|.+...... .++++++.++++|++++
T Consensus 246 ~h~~~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~ 323 (567)
T PLN02479 246 FHCNGWCFTWTLAALCGTNICL-R-QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPP 323 (567)
T ss_pred hhhhhHHHHHHHHhhcCceEec-c-CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCC
Confidence 999887433 345666666554 3 3678899999999999999999999999987543222 25788999999999999
Q ss_pred HhHHHHHHhccCCCCeeecccccccccccccCCc---------cc-ccccccccCCCCCcE-EEEEc-CCCCccCCCCCc
Q 004815 486 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL---------LQ-AQSLAAFSTPAMGCK-LFILG-NDGCPIPQNVPG 553 (729)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~---------~~-~~~~~~iG~p~~~~~-~~v~d-~~g~~~p~g~~g 553 (729)
+.+.+++.+. +.++++.||+||+++.++.... .. .......|.|.+|+. ++|+| ++++++|.+...
T Consensus 324 ~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~ 401 (567)
T PLN02479 324 PSVLFAMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKT 401 (567)
T ss_pred HHHHHHHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCC
Confidence 9998888754 4789999999998643322110 00 011135688888876 89999 468888765211
Q ss_pred eeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHh
Q 004815 554 MGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN 633 (729)
Q Consensus 554 iGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~ 633 (729)
+|||++.+..+.. .|+++++.+++.|.. | ||+|||+|++++||+++|+||.||+||++|++|+|.|||++|.
T Consensus 402 ~GEl~v~g~~~~~-GY~~~~~~t~~~~~~-----g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~ 473 (567)
T PLN02479 402 MGEIVMRGNMVMK-GYLKNPKANEEAFAN-----G--WFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVY 473 (567)
T ss_pred ceEEEEeccchhh-hhhcCcccccchhcC-----C--ceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHH
Confidence 4999996554433 246678888877742 3 9999999999999999999999999999999999999999995
Q ss_pred cCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhH
Q 004815 634 AVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMR 713 (729)
Q Consensus 634 ~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR 713 (729)
.||.|.+|+|++.++...+ +.+++++++.. +....+.+.+.+.++++++++||+|++|..+++ ++||+|++||++|
T Consensus 474 -~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r 549 (567)
T PLN02479 474 -THPAVLEASVVARPDERWG-ESPCAFVTLKP-GVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQK 549 (567)
T ss_pred -hCcccceeeEEeccchhcC-ceeEEEEEecC-cccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeH
Confidence 8999999999999887766 78999999876 321112234556777889999999999988876 6799999999999
Q ss_pred HHHHHHHHh--hhhcCCC
Q 004815 714 RVLRKQLAQ--LDQNSKL 729 (729)
Q Consensus 714 ~~L~~~~~~--~~~~~~~ 729 (729)
++|++.+.. +..+|||
T Consensus 550 ~~L~~~~~~~~~~~~~~~ 567 (567)
T PLN02479 550 HVLRAKAKEMGPVKKSRL 567 (567)
T ss_pred HHHHHHHHhhCCcccccC
Confidence 999988765 6667765
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=579.35 Aligned_cols=526 Identities=17% Similarity=0.138 Sum_probs=383.2
Q ss_pred CCCCcCCCCcchHHhhhhccccCCCCCCeEEEEeec-----------CCC--------CCCceeecHHHHHHHHHHHHHH
Q 004815 166 PGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDE-----------GDG--------GLPVKSMTLKELRAEVWLVAYA 226 (729)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~-----------~~~--------~~~~~~lTY~eL~~~a~~lA~~ 226 (729)
....|+.. ....++|.++++++||++|+.+... .+. .+..+.+||+||.++++++|++
T Consensus 61 ~~~~~~~~---~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~ 137 (700)
T PTZ00216 61 LRNEWYYG---PNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRG 137 (700)
T ss_pred cccccCCC---CCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHH
Confidence 34456543 2467889999999999999998521 000 0245799999999999999999
Q ss_pred HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHH
Q 004815 227 LNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVI 306 (729)
Q Consensus 227 L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~ 306 (729)
|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.... .......
T Consensus 138 L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~------~~l~~~~ 211 (700)
T PTZ00216 138 LAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNV------PNLLRLM 211 (700)
T ss_pred HHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHH------HHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999986421 1111111
Q ss_pred hh--cCC-cEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHH
Q 004815 307 DA--QAP-LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPF 383 (729)
Q Consensus 307 ~~--~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~ 383 (729)
.. .+. .++++........ .......+|.+++.................++++|||+|||||||.||||+++|+|++
T Consensus 212 ~~~~~~~~~ii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~ 290 (700)
T PTZ00216 212 KSGGMPNTTIIYLDSLPASVD-TEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLT 290 (700)
T ss_pred hhccCCceEEEEECCCccccc-cCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHH
Confidence 11 111 2333322111000 0011234677776543210111111234468999999999999999999999999999
Q ss_pred HHHHHHHhhC-----CCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHH-------HHHHcCCcEEE
Q 004815 384 KAAADAWCHM-----DIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAK-------FVQDAKVTMLG 451 (729)
Q Consensus 384 ~~~~~~~~~~-----~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~-------~i~~~~vt~~~ 451 (729)
+.+.+....+ .+.++|++++++|++|.++.......+..|+++++. ++..+.+ .|+++++|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~----~~~~l~~~~~~~~~~l~~~~pT~~~ 366 (700)
T PTZ00216 291 AGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG----SPRTLTDTFARPHGDLTEFRPVFLI 366 (700)
T ss_pred HHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC----CHHHhhhhhccccchHHHcCCcEEE
Confidence 8877665443 247889999999999988875555567788876652 2334433 68999999999
Q ss_pred ecHHHHHHHHhcCCC-------------------------CCCC---------------C-CCccEEEeecCCCCHhHHH
Q 004815 452 VVPSIVRTWKSTNCI-------------------------DGYD---------------W-SSIRCFGSTGEASNVDEYL 490 (729)
Q Consensus 452 ~~P~~l~~l~~~~~~-------------------------~~~~---------------l-~sLr~v~~gGe~l~~~~~~ 490 (729)
.+|++++.+.+.... ...+ + +++|.+++||+++++++.+
T Consensus 367 ~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~ 446 (700)
T PTZ00216 367 GVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQE 446 (700)
T ss_pred echHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH
Confidence 999999887542100 0000 1 5799999999999999988
Q ss_pred HHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCC--ccCCCCCceeEEEeeccccCCCc
Q 004815 491 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC--PIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 491 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~--~~p~g~~giGel~v~~~~~~~~~ 568 (729)
+++..+ + +++|.||+||+++..+.... .....+++|+|++|++++|+|+++. ..+++.. |||+|++..+..+
T Consensus 447 ~~~~~~-~-~l~~~YG~TEt~~~~~~~~~-~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~--GEL~vrG~~v~~G- 520 (700)
T PTZ00216 447 FVNVVF-G-MVIQGWGLTETVCCGGIQRT-GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPR--GEILLRGPFLFKG- 520 (700)
T ss_pred HHHHHh-h-hHhhccCcccccccccccCC-CCCCCCCcCCcCCCeEEEEeechhhccCCCCCCC--ceEEEcCCcccch-
Confidence 776544 3 89999999999865444332 2335689999999999999997652 3344544 9999966554433
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeee-cCceeechHHHHHHHhcCCCCeeee--EEE
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMN-LGGIKVSSVEIERICNAVDSNVLET--AAI 645 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~ik-i~G~ri~~~eIE~~L~~~~p~V~~a--~Vv 645 (729)
|+++++.|++.|..+ | ||+|||+|++++||+|+|+||+||+|| ++|++|+|.|||++|. .||.|.++ +|+
T Consensus 521 Y~~~pe~T~~~f~~d----G--w~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~-~~p~V~~~~~~v~ 593 (700)
T PTZ00216 521 YYKQEELTREVLDED----G--WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYG-QNELVVPNGVCVL 593 (700)
T ss_pred hcCChhHhhhhcccc----C--CeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHh-cCcCcccceEEEE
Confidence 477899999998653 3 999999999999999999999999999 8999999999999994 99999973 444
Q ss_pred eecCCCCCceeEEEEEEecCC---------CCC-C----CChHHHHHHHHHHH-----HhhCCCCCccceEEeCCC----
Q 004815 646 GVPPPDGGPEQLTIVVVFKDS---------NYT-P----PDLNQLRMSFNSAV-----QKKLNPLFKVSHVVPLPS---- 702 (729)
Q Consensus 646 ~~~~~~~g~~~l~a~vv~~~~---------~~~-~----~~~~~l~~~l~~~l-----~~~L~~~~~P~~i~~v~~---- 702 (729)
+.++ ...++|+|++... +.. . ....++++.+.+.+ +..|..|.+|+.|.++.+
T Consensus 594 ~~~~----~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~ 669 (700)
T PTZ00216 594 VHPA----RSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTP 669 (700)
T ss_pred EecC----CceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCC
Confidence 4322 2679999987530 110 0 01123344443333 246888999998887743
Q ss_pred --CCCCCCChhhHHHHHHHHHh
Q 004815 703 --LPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 703 --lP~t~~GKidR~~L~~~~~~ 722 (729)
=-+|+++|+.|+++.+.+.+
T Consensus 670 ~~g~lT~t~K~~R~~i~~~y~~ 691 (700)
T PTZ00216 670 ENGVLTAAMKLKRRVIDERYAD 691 (700)
T ss_pred CCCCCChhhccchHHHHHHHHH
Confidence 34799999999999998876
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=542.90 Aligned_cols=428 Identities=17% Similarity=0.149 Sum_probs=347.6
Q ss_pred eecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEE
Q 004815 210 SMTLKELRAEVWLVAYALNALGL-DKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288 (729)
Q Consensus 210 ~lTY~eL~~~a~~lA~~L~~~Gv-~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~ 288 (729)
-+.|+||+++++++|++|++.|+ ++|++|+++++|+++++++++||+++|++++|+||.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 58899999999999999999998 57999999999999999999999999999999999999999999999999999998
Q ss_pred ecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCC
Q 004815 289 QDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGT 368 (729)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGS 368 (729)
++..... . . ... .. ......++++++++|||||
T Consensus 99 ~~~~~~~-------------~------~-------------~~~------------~~---~~~~~~~~~~~~i~~TSGT 131 (452)
T PRK07445 99 LDQLKLS-------------H------P-------------PPL------------PS---QGILPNLETGWIMIPTGGS 131 (452)
T ss_pred cCccccc-------------c------C-------------CCC------------Cc---cccCCCCCCcEEEEeCCCC
Confidence 7642100 0 0 000 00 0011356899999999999
Q ss_pred CCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCc
Q 004815 369 TGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVT 448 (729)
Q Consensus 369 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt 448 (729)
||.||||++||+++...+.+....+++.+ ++.++.+|++|.+++..++.+|+.|+++++.+.. ..........++++|
T Consensus 132 TG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~-~~~~~~~~~~~~~~t 209 (452)
T PRK07445 132 SGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYK-RLKSGQELPPNPSDF 209 (452)
T ss_pred CCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChH-hccchhhhhhhcCce
Confidence 99999999999999888887777777765 4678889999999998888999999999998632 122223445678999
Q ss_pred EEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCccc-cccccc
Q 004815 449 MLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ-AQSLAA 527 (729)
Q Consensus 449 ~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~~ 527 (729)
++.++|++++.+.+.. ...+++||.+++||+++++++.+++.. . ++++++.||+||++..+....+.. .....+
T Consensus 210 ~~~~vP~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~ 284 (452)
T PRK07445 210 FLSLVPTQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETASQIATLKPDDFLAGNNS 284 (452)
T ss_pred EEEehHHHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcccccccCchhhccCCCc
Confidence 9999999999988632 334789999999999999999887764 3 578999999999876544332221 123467
Q ss_pred ccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEE
Q 004815 528 FSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYR 607 (729)
Q Consensus 528 iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~ 607 (729)
+|+|++|++++|+ .|+. |||+|.+..+..+| + +. +. ...+||+|||+|++++||+++
T Consensus 285 ~G~~~p~~~v~i~--------~g~~--Gel~v~g~~~~~gY-~-~~----------~~-~~~g~~~TGDl~~~d~dG~l~ 341 (452)
T PRK07445 285 SGQVLPHAQITIP--------ANQT--GNITIQAQSLALGY-Y-PQ----------IL-DSQGIFETDDLGYLDAQGYLH 341 (452)
T ss_pred CCccCCCCeEEEc--------CCCc--ceEEEeCCccchhh-c-CC----------cc-CCCCEEECCCEEEEcCCCCEE
Confidence 9999999999998 3454 99999654433222 1 21 11 123499999999999999999
Q ss_pred EEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhh
Q 004815 608 AHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK 687 (729)
Q Consensus 608 ~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~ 687 (729)
|.||.||+||++|++|+|.|||++|. .||+|.+|+|++.+++..| +.++|+++.++ +. .+.+++++ +++++
T Consensus 342 ~~GR~dd~I~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~~~~~~g-~~~~a~vv~~~-~~--~~~~~l~~----~~~~~ 412 (452)
T PRK07445 342 ILGRNSQKIITGGENVYPAEVEAAIL-ATGLVQDVCVLGLPDPHWG-EVVTAIYVPKD-PS--ISLEELKT----AIKDQ 412 (452)
T ss_pred EEeecCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEeccCcCCC-cEEEEEEEeCC-CC--CCHHHHHH----HHHHh
Confidence 99999999999999999999999995 9999999999999998877 78999999876 32 44455554 67789
Q ss_pred CCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 688 LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 688 L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
|++|++|..++++++||+|++||++|++|++++.+.
T Consensus 413 L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 448 (452)
T PRK07445 413 LSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQR 448 (452)
T ss_pred CCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHh
Confidence 999999999999999999999999999999998763
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-62 Score=550.19 Aligned_cols=496 Identities=20% Similarity=0.199 Sum_probs=392.1
Q ss_pred cccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEe
Q 004815 185 VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVS 264 (729)
Q Consensus 185 ~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vp 264 (729)
.+++++||++|+++.+.+ ..+||.||.++++++|++|+++|+++|++|+++++|++++++++|||+++|++++|
T Consensus 5 ~~a~~~p~~~a~~~~~~~------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~ 78 (511)
T PRK13391 5 IHAQTTPDKPAVIMASTG------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTC 78 (511)
T ss_pred hhHhhCCCceEEEecCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEec
Confidence 456789999999985331 28999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHHHHHHHhh
Q 004815 265 IADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLDFLERVR 342 (729)
Q Consensus 265 ldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (729)
+++.++.+++.++++++++++++++.... .....+...... ..+.+...... .....+.+.....
T Consensus 79 l~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~- 145 (511)
T PRK13391 79 VNSHLTPAEAAYIVDDSGARALITSAAKL------DVARALLKQCPGVRHRLVLDGDGEL------EGFVGYAEAVAGL- 145 (511)
T ss_pred cccccCHHHHHHHHhccCCcEEEEchhhH------HHHHHHHhcCCCceEEEEecCCCCC------cccccHHHHhcCC-
Confidence 99999999999999999999999987421 111222222222 11222111100 1112233322110
Q ss_pred ccccCccccccCCCCCeeEEEeccCCCCCCceEEeC--CchHH---HHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHH
Q 004815 343 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT--NATPF---KAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (729)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~s--h~~l~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~ 417 (729)
+ . ......++.++++|||||||.||||+++ |.++. +........+++.+++++++..|++|+.+....+
T Consensus 146 ---~-~--~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~ 219 (511)
T PRK13391 146 ---P-A--TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVM 219 (511)
T ss_pred ---C-C--CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHH
Confidence 0 0 1112344678999999999999999964 66543 2333445567888999999999999998887778
Q ss_pred HHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 418 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 418 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
.++..|+++++.+. .++..+++.++++++|++.++|+++..+.+... ....+++++|.+++||+++++++.+++.+.
T Consensus 220 ~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~ 298 (511)
T PRK13391 220 LVIRLGGTVIVMEH-FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDW 298 (511)
T ss_pred HHHHcCceEEECCC-CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHH
Confidence 89999999999864 678899999999999999999999998876532 123457899999999999999999988876
Q ss_pred cCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 575 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~ 575 (729)
++ ..+++.||+||++.++...........+++|+|+++ .++|+|++|++++.|+. |||++.+. +.. .|+++++.
T Consensus 299 ~g-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~--Gel~~~g~-~~~-gy~~~~~~ 372 (511)
T PRK13391 299 WG-PIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELPPGEP--GTIWFEGG-RPF-EYLNDPAK 372 (511)
T ss_pred cC-CceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecC-cce-EEcCChhH
Confidence 64 789999999999865443322223345789999999 69999999999999987 99999665 322 25667777
Q ss_pred cccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004815 576 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 655 (729)
Q Consensus 576 ~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 655 (729)
++..|..+ .+||+|||+|++++||.++++||.||++|++|.+|++.|||++|. .||.|.+|+|+++++...| +
T Consensus 373 ~~~~~~~~-----~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~-~~~~v~~~~v~~~~~~~~g-~ 445 (511)
T PRK13391 373 TAEARHPD-----GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLI-THPKVADAAVFGVPNEDLG-E 445 (511)
T ss_pred hHHhhccC-----CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEecCCcccC-c
Confidence 77666543 249999999999999999999999999999999999999999996 8999999999999888777 7
Q ss_pred eEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 656 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 656 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
.+++++++.+ +. . ..+.+.+.++++++++||+|++|..|.+++++|+|++||++|+.|++.+.+
T Consensus 446 ~~~~~~~~~~-~~-~-~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 446 EVKAVVQPVD-GV-D-PGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred eeEEEEEECC-CC-C-cccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 8889998776 33 1 123345566678899999999999999999999999999999999998764
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-62 Score=555.27 Aligned_cols=507 Identities=21% Similarity=0.228 Sum_probs=395.0
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
..+.|+++++++|+++|+++.+. ++||+||.++++++|.+|.+ .|+++|++|+++++|++++++++|||++
T Consensus 25 l~~~l~~~a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 96 (560)
T PRK08974 25 LVDMFEQAVARYADQPAFINMGE--------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILR 96 (560)
T ss_pred HHHHHHHHHHhCCCCceEEECCc--------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 44668888889999999998765 99999999999999999985 8999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccc-----------
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMK----------- 326 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------- 326 (729)
+|++++|++|.++.+++.+++++++++++++++... .....+........+.+..........
T Consensus 97 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (560)
T PRK08974 97 AGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFA------HTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKY 170 (560)
T ss_pred cCcEEeccCccCCHHHHHHHHHhcCceEEEEecccc------HHHHHHhhhcCcceEEEecccccccccccccccchhhh
Confidence 999999999999999999999999999999986432 112222211111111111100000000
Q ss_pred --------cCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhC---CC
Q 004815 327 --------LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM---DI 395 (729)
Q Consensus 327 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~---~~ 395 (729)
..+....+.+...... ..........++++++++|||||||.||||+++|+++...+......+ ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~ 247 (560)
T PRK08974 171 IKRLVPKYHLPDAISFRSALHKGR---RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLH 247 (560)
T ss_pred cccccccccCCCcccHHHHhhccC---CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccC
Confidence 0001111222211111 001112234678999999999999999999999999987665443333 23
Q ss_pred CCCCEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCc
Q 004815 396 RKADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 474 (729)
Q Consensus 396 ~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sL 474 (729)
..+++++..+++.|.++. ...+.++.+|+++++.....++..+++.++++++|.+..+|++++.|.........+++++
T Consensus 248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l 327 (560)
T PRK08974 248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSL 327 (560)
T ss_pred CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccce
Confidence 446677888888888775 4566788899998887655577789999999999999999999999987655455667899
Q ss_pred cEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCce
Q 004815 475 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGM 554 (729)
Q Consensus 475 r~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~gi 554 (729)
|.+++||+++++.+.+++.+.+ ++++++.||+||++..++...........++|.|++|++++|+|++++++|.|+.
T Consensus 328 r~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~-- 404 (560)
T PRK08974 328 KLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEP-- 404 (560)
T ss_pred eEEEecCccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCCc--
Confidence 9999999999999988887655 5899999999999876554443333445789999999999999999999999986
Q ss_pred eEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhc
Q 004815 555 GELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 634 (729)
Q Consensus 555 Gel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~ 634 (729)
|||++++..+..+ |+++++.++..|. +| ||+|||+|+++++|+++++||.||+||++|.+|+|.+||++|.
T Consensus 405 Gel~v~g~~~~~g-y~~~~~~~~~~~~-----~g--~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~- 475 (560)
T PRK08974 405 GELWVKGPQVMLG-YWQRPEATDEVIK-----DG--WLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVM- 475 (560)
T ss_pred eEEEEecCCcchh-hcCChhhhhhhhh-----cC--CcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHH-
Confidence 9999966554433 3556677766662 13 9999999999999999999999999999999999999999995
Q ss_pred CCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHH
Q 004815 635 VDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714 (729)
Q Consensus 635 ~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~ 714 (729)
.||+|.+++|++.++...| +.++++++..+ . ..+.++++ +++.++|++|++|..+.++++||+|++||++|+
T Consensus 476 ~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~-~--~~~~~~l~----~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~ 547 (560)
T PRK08974 476 LHPKVLEVAAVGVPSEVSG-EAVKIFVVKKD-P--SLTEEELI----THCRRHLTGYKVPKLVEFRDELPKSNVGKILRR 547 (560)
T ss_pred hCCCeeEEEEEeeecCCcc-eEEEEEEECCC-C--CCCHHHHH----HHHHhhcccccCCcEEEEhhhCCCCCCCcEeHH
Confidence 9999999999999888777 67777776554 2 23444444 467888999999999999999999999999999
Q ss_pred HHHHHHHh
Q 004815 715 VLRKQLAQ 722 (729)
Q Consensus 715 ~L~~~~~~ 722 (729)
+|++....
T Consensus 548 ~l~~~~~~ 555 (560)
T PRK08974 548 ELRDEARA 555 (560)
T ss_pred HHHHHHHh
Confidence 99988765
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=547.01 Aligned_cols=487 Identities=21% Similarity=0.209 Sum_probs=384.6
Q ss_pred eEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHH
Q 004815 194 IVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLE 273 (729)
Q Consensus 194 ~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~ 273 (729)
.|++.+++ .+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|++|.++.++
T Consensus 3 ~~~~~~~~--------~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 74 (509)
T PRK12406 3 ATIISGDR--------RRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEE 74 (509)
T ss_pred eEEEECCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHH
Confidence 46666655 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEE--EcCCCC-------Ccc-cccCCCCcCHHHHHHHhhc
Q 004815 274 ISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIV--IPAKGS-------SFS-MKLRDGDISWLDFLERVRK 343 (729)
Q Consensus 274 l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~ 343 (729)
+.++++++++++++++..... .+.+..+..+.. +..... ... .........|++......
T Consensus 75 ~~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 144 (509)
T PRK12406 75 IAYILEDSGARVLIAHADLLH---------GLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE- 144 (509)
T ss_pred HHHHHhccCCcEEEEccchhh---------hhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccC-
Confidence 999999999999999875321 111111111111 110000 000 001122344555432211
Q ss_pred cccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHH---HHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHh
Q 004815 344 LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 420 (729)
Q Consensus 344 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L 420 (729)
+.....++++++++|||||||.||||+++|.+..+. .......+++.++++++...++.|..+....+.++
T Consensus 145 ------~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 218 (509)
T PRK12406 145 ------PYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAG 218 (509)
T ss_pred ------ccCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHH
Confidence 112335789999999999999999999987764433 33334567889999999999999988876666788
Q ss_pred hcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHhccCC
Q 004815 421 LNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 498 (729)
Q Consensus 421 ~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~ 498 (729)
..|+++++.+. .++..+++.++++++|++..+|+++..|++... ....+++++|.+++||+++++++.+++.+.++
T Consensus 219 ~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~- 296 (509)
T PRK12406 219 RLGGVLVLQPR-FDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWG- 296 (509)
T ss_pred hhheEEEEccC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcC-
Confidence 99999988764 578899999999999999999999999887543 23456789999999999999999998887654
Q ss_pred CCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccccc
Q 004815 499 KPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 578 (729)
Q Consensus 499 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~ 578 (729)
+.+++.||+||++.++...........+++|+|+++++++|+|+++++++.|.+ |||++.+..+...+|+++++.++.
T Consensus 297 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~~~y~~~~~~~~~ 374 (509)
T PRK12406 297 PVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEI--GEIYSRIAGNPDFTYHNKPEKRAE 374 (509)
T ss_pred CcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCc--eEEEEECCccccccccCCchhccc
Confidence 789999999999875543332223345689999999999999999999999987 999996544332234555665554
Q ss_pred ccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 579 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
.+. ..||+|||+|++++||++++.||.||+||++|.+|+|.|||+.|. .+|+|.+|+|++.++...+ +.++
T Consensus 375 ~~~-------~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~ 445 (509)
T PRK12406 375 IDR-------GGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLH-AVPGVHDCAVFGIPDAEFG-EALM 445 (509)
T ss_pred ccC-------CCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeeeccccC-ceeE
Confidence 432 239999999999999999999999999999999999999999995 8999999999999887766 7889
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 659 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 659 a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
+++++.+ +. ..+.+++++ .+++.|++|++|..++++++||+|++||++|++|++.+...
T Consensus 446 ~~v~~~~-~~-~~~~~~l~~----~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~ 504 (509)
T PRK12406 446 AVVEPQP-GA-TLDEADIRA----QLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWAN 504 (509)
T ss_pred EEEEECC-CC-CCCHHHHHH----HHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhh
Confidence 9998876 33 345555555 57788999999999999999999999999999999987764
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-62 Score=563.32 Aligned_cols=518 Identities=15% Similarity=0.120 Sum_probs=383.2
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEECC
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL---GLDKG-----------SAIAIDMP 243 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~---Gv~~g-----------d~Vai~~~ 243 (729)
...++|.++++++||++|+++... ...++.+||+||.++++++|++|.++ |+++| |+|+|+++
T Consensus 62 ~l~~~l~~~~~~~p~~~Al~~~~~---g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~ 138 (746)
T PTZ00342 62 HIMKLLLEKYKLNNNKIAIVEHSC---GEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGS 138 (746)
T ss_pred hHHHHHHHHHhhcCCceeEeccCC---CCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcC
Confidence 455778888999999999987422 11246899999999999999999974 99999 99999999
Q ss_pred CCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCC
Q 004815 244 MNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGS 321 (729)
Q Consensus 244 ~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~ 321 (729)
|+++|+++++||+++|++.||+++.++.+++.++|+++++++||++.... +.+..+...++. .++++.....
T Consensus 139 N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~ 212 (746)
T PTZ00342 139 NSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLV------EGLLERKNELPHLKKLIILDTLIK 212 (746)
T ss_pred CCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHH------HHHHHhhccCCCceEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999976421 222222223332 2333432110
Q ss_pred Ccccc-----------c-CCC-------------------------------CcCHHHHHHHhhc-------------cc
Q 004815 322 SFSMK-----------L-RDG-------------------------------DISWLDFLERVRK-------------LK 345 (729)
Q Consensus 322 ~~~~~-----------~-~~~-------------------------------~~~~~~~~~~~~~-------------~~ 345 (729)
..... . ..+ ...|.++...... ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 292 (746)
T PTZ00342 213 SKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNK 292 (746)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhc
Confidence 00000 0 000 0112222211100 00
Q ss_pred cCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhC--CCCCCCEEEEccCcchhhhHHHHHHHhhcC
Q 004815 346 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM--DIRKADIVAWPTNLGWMMGPWLVYASLLNG 423 (729)
Q Consensus 346 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G 423 (729)
....+.....++++|+|+|||||||.||||++||+|+++.+....... ...+.|++++++|++|.++....+.+++.|
T Consensus 293 ~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G 372 (746)
T PTZ00342 293 TTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLG 372 (746)
T ss_pred ccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcC
Confidence 011122345689999999999999999999999999988876554321 233568999999999999987677889999
Q ss_pred ceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhc--------CCCCC---------------------------
Q 004815 424 ASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKST--------NCIDG--------------------------- 468 (729)
Q Consensus 424 ~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~--------~~~~~--------------------------- 468 (729)
+++++.++ ++..+++.|+++++|++.++|.++..+.+. +....
T Consensus 373 ~~i~~~~~--~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (746)
T PTZ00342 373 GTINIWSK--DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITH 450 (746)
T ss_pred CEEEEeCC--CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 99999864 678899999999999999999999988642 10000
Q ss_pred -------CCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCC-CCcEEEEE
Q 004815 469 -------YDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFIL 540 (729)
Q Consensus 469 -------~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~v~ 540 (729)
.-.++||.+++||+++++++.+++...++ +++++.||+||+++..+.... .....+++|+|+ |+++++|+
T Consensus 451 v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g-~~i~~gYGlTEt~~~~~~~~~-~~~~~gsvG~p~~pg~e~ki~ 528 (746)
T PTZ00342 451 ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN-VNYYQGYGLTETTGPIFVQHA-DDNNTESIGGPISPNTKYKVR 528 (746)
T ss_pred HHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC-CCEEEeeccCcccceeeeccC-CCCCcccccCcCCCcEEEEEe
Confidence 00268999999999999999999887654 899999999999765444333 234568999998 99999999
Q ss_pred c-CCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeec-
Q 004815 541 G-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNL- 618 (729)
Q Consensus 541 d-~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki- 618 (729)
| +++...+.+.. |||++.+..+-. .|+++++.|++.|..+ | ||+|||+|++|+||+|+|+||+||+||+
T Consensus 529 d~~~~~~~~~~~~--GEl~vrGp~v~~-GY~~~pe~T~~~f~~d----G--W~~TGDig~~d~dG~l~i~gR~kdlIkls 599 (746)
T PTZ00342 529 TWETYKATDTLPK--GELLIKSDSIFS-GYFLEKEQTKNAFTED----G--YFKTGDIVQINKNGSLTFLDRSKGLVKLS 599 (746)
T ss_pred cccccccCCCCCc--eEEEEecCcccc-cccCChhhhhhhcCcC----C--cccCCcEEEECCCCeEEEEccCCCeEEeC
Confidence 8 44444444444 999995543332 2467889999988643 3 9999999999999999999999999996
Q ss_pred CceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCC---------------CCCCCCh----------
Q 004815 619 GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS---------------NYTPPDL---------- 673 (729)
Q Consensus 619 ~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~---------------~~~~~~~---------- 673 (729)
+|++|+|.|||++| .+||.|.+|+|++.. .. ..++|+|++... +....+.
T Consensus 600 ~Ge~I~p~eIE~~l-~~~p~V~~~~VvG~~---~~-~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~ 674 (746)
T PTZ00342 600 QGEYIETDMLNNLY-SQISFINFCVVYGDD---SM-DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETIN 674 (746)
T ss_pred CCEEEchHHHHHHH-hcCCCccEEEEEccC---Cc-cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhc
Confidence 79999999999999 599999999999852 11 469999987641 1100011
Q ss_pred -HHHHHHHHHHHH-----hhCCCCCccceEEeCC-CCC----CCCCChhhHHHHHHHHHh
Q 004815 674 -NQLRMSFNSAVQ-----KKLNPLFKVSHVVPLP-SLP----RTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 674 -~~l~~~l~~~l~-----~~L~~~~~P~~i~~v~-~lP----~t~~GKidR~~L~~~~~~ 722 (729)
.++++.+.+.+. ..|+.|.++++|..+. .+- +||+-|+.|+.+.+.++.
T Consensus 675 ~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~ 734 (746)
T PTZ00342 675 NNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAF 734 (746)
T ss_pred cHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHH
Confidence 122343433332 3699999998888775 332 899999999999998774
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=569.08 Aligned_cols=524 Identities=16% Similarity=0.124 Sum_probs=386.7
Q ss_pred HHhhhhccccCCCCCCeEEEEee----------cCC-----CCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEC
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCD----------EGD-----GGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDM 242 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~----------~~~-----~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~ 242 (729)
...++|.+.++++||++|+.+.. .+. ..+.++.+||+||.++++++|++|.++|+++||+|+|++
T Consensus 59 t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~ 138 (696)
T PLN02387 59 TLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFA 138 (696)
T ss_pred CHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEc
Confidence 45678999999999999995421 000 114456799999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCC
Q 004815 243 PMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKG 320 (729)
Q Consensus 243 ~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~ 320 (729)
+|++++++++|||+++|+++|||++.++.+++.++|++++++++|++.... ..+..+...++. .++.+....
T Consensus 139 ~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~ 212 (696)
T PLN02387 139 DTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQL------KKLIDISSQLETVKRVIYMDDEG 212 (696)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHH------HHHHHHhhccCCceEEEEECCCC
Confidence 999999999999999999999999999999999999999999999986422 222222222222 233333211
Q ss_pred CCccc----ccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhC-CC
Q 004815 321 SSFSM----KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DI 395 (729)
Q Consensus 321 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~ 395 (729)
..... ........|.++....... ..+.....++++|+|+|||||||.||||++||++++..+......+ ++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~ 289 (696)
T PLN02387 213 VDSDSSLSGSSNWTVSSFSEVEKLGKEN---PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKL 289 (696)
T ss_pred chhhhhhhccCCcEEEEHHHHHHhhccC---CCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCC
Confidence 10000 0000123466665443211 1122234689999999999999999999999999988877665543 68
Q ss_pred CCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCC-------ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCC-
Q 004815 396 RKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSP-------LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID- 467 (729)
Q Consensus 396 ~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~-------~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~- 467 (729)
+++|+++.++|++|.++....+..+..|+++....... .+..++..++++++|++.++|+++..+.+.....
T Consensus 290 ~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~ 369 (696)
T PLN02387 290 GKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKV 369 (696)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHH
Confidence 89999999999999999865555677777776532111 1234567899999999999999999886431000
Q ss_pred ------------------------------C--C-------------CC-CCccEEEeecCCCCHhHHHHHHhccCCCCe
Q 004815 468 ------------------------------G--Y-------------DW-SSIRCFGSTGEASNVDEYLWLMGRALYKPV 501 (729)
Q Consensus 468 ------------------------------~--~-------------~l-~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l 501 (729)
. . .+ +++|.+++||+++++++.+++...+ ++++
T Consensus 370 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~v 448 (696)
T PLN02387 370 DAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-GAPI 448 (696)
T ss_pred hcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCCe
Confidence 0 0 01 5899999999999999987776555 4899
Q ss_pred eecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCcc---CCCCCceeEEEeeccccCCCcccccccccc
Q 004815 502 IEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPI---PQNVPGMGELALSPLIFGASSTLLNANHYD 577 (729)
Q Consensus 502 ~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~---p~g~~giGel~v~~~~~~~~~~~~~~~~~~ 577 (729)
++.||+||++..++.... .....+++|+|+|+++++|+| +++... .++.. |||+|.+..+..+ |+++++.|+
T Consensus 449 ~~~YG~TEt~~~~~~~~~-~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~--GEi~vrGp~v~~G-Y~~~pe~T~ 524 (696)
T PLN02387 449 GQGYGLTETCAGATFSEW-DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPR--GEIVIGGPSVTLG-YFKNQEKTD 524 (696)
T ss_pred eEeechhhcccceeecCc-ccCCCCccCCCCCceEEEEeeccccCcccCCCCCCC--ceEEeccCcccch-hcCCHHHHh
Confidence 999999999865544433 233467899999999999999 555432 22233 9999965544332 467889999
Q ss_pred cccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeec-CceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCcee
Q 004815 578 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQ 656 (729)
Q Consensus 578 ~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 656 (729)
+.|..++ +|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|. .||.|.+|+|++.+. . ..
T Consensus 525 ~~f~~d~--~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~-~~p~V~~~~V~g~~~---~-~~ 597 (696)
T PLN02387 525 EVYKVDE--RGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS-VSPYVDNIMVHADPF---H-SY 597 (696)
T ss_pred hhhcccc--CCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh-cCCCeeEEEEEecCC---c-ce
Confidence 8885433 35579999999999999999999999999998 599999999999995 999999999998542 2 57
Q ss_pred EEEEEEecCC---------CCCCCC------hHHHHHHHHHHH-----HhhCCCCCccceEEeCCCCC------CCCCCh
Q 004815 657 LTIVVVFKDS---------NYTPPD------LNQLRMSFNSAV-----QKKLNPLFKVSHVVPLPSLP------RTATNK 710 (729)
Q Consensus 657 l~a~vv~~~~---------~~~~~~------~~~l~~~l~~~l-----~~~L~~~~~P~~i~~v~~lP------~t~~GK 710 (729)
++|+|++... +....+ ..++++.+.+.+ +.+|+.|.+|+.|.++++-. +||+.|
T Consensus 598 ~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K 677 (696)
T PLN02387 598 CVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALK 677 (696)
T ss_pred EEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhh
Confidence 8999998641 100001 123333333333 34699999999999887643 788889
Q ss_pred hhHHHHHHHHHh
Q 004815 711 VMRRVLRKQLAQ 722 (729)
Q Consensus 711 idR~~L~~~~~~ 722 (729)
+.|+.+.+.+.+
T Consensus 678 ~~R~~i~~~y~~ 689 (696)
T PLN02387 678 LKREQIRKKFKD 689 (696)
T ss_pred hhhHHHHHHHHH
Confidence 999999999886
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-62 Score=561.81 Aligned_cols=503 Identities=15% Similarity=0.115 Sum_probs=378.5
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...+.|+++++++|+++|+++.+. .+.++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||++
T Consensus 40 ~l~~~l~~~a~~~p~~~a~~~~~~---~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~ 116 (614)
T PRK08180 40 RLTDRLVHWAQEAPDRVFLAERGA---DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMY 116 (614)
T ss_pred cHHHHHHHHHHHCCCCceeeeccC---CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 345678888889999999997532 12345899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCC-----HHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhc---CCcEEEEcCCCCCcccccCC
Q 004815 258 AGYIVVSIADSFA-----SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ---APLAIVIPAKGSSFSMKLRD 329 (729)
Q Consensus 258 aGa~~vpldp~~~-----~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~ 329 (729)
+|++++|++|.++ .+++.+++++++++++|+++... ........ ....+....... ..
T Consensus 117 ~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~------~~ 182 (614)
T PRK08180 117 AGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA--------FARALAAVVPADVEVVAVRGAVP------GR 182 (614)
T ss_pred cCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH--------HHHHHhhhccCCceEEEecCCCC------Cc
Confidence 9999999999998 79999999999999999975310 01111111 111222211000 01
Q ss_pred CCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCC--CCCEEEEccCc
Q 004815 330 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIR--KADIVAWPTNL 407 (729)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~--~~d~~l~~~~~ 407 (729)
....|.++...... ...........++++|+|+|||||||.||||++||+++...+......+++. .++++++.+|+
T Consensus 183 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl 261 (614)
T PRK08180 183 AATPFAALLATPPT-AAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPW 261 (614)
T ss_pred ccccHHHHhccccc-cchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecch
Confidence 12456665543111 0001111234678999999999999999999999999998887776666664 56899999999
Q ss_pred chhhhH-HHHHHHhhcCceEEEeCCCCCh---hhHHHHHHHcCCcEEEecHHHHHHHHhcCC----CCCCCCCCccEEEe
Q 004815 408 GWMMGP-WLVYASLLNGASIALYNGSPLG---SGFAKFVQDAKVTMLGVVPSIVRTWKSTNC----IDGYDWSSIRCFGS 479 (729)
Q Consensus 408 ~~~~~~-~~i~~~L~~G~~lvl~~~~~~~---~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~----~~~~~l~sLr~v~~ 479 (729)
+|.++. ..++.+|++|+++++.++.+++ ..+++.|+++++|+++++|+++..|++... .....+++||.+++
T Consensus 262 ~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~ 341 (614)
T PRK08180 262 NHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFY 341 (614)
T ss_pred HHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEE
Confidence 999887 5678899999999998754444 357788999999999999999999876421 12345789999999
Q ss_pred ecCCCCHhHHHHHHhc----cC-CCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCce
Q 004815 480 TGEASNVDEYLWLMGR----AL-YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGM 554 (729)
Q Consensus 480 gGe~l~~~~~~~~~~~----~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~gi 554 (729)
||+++++++.+++.+. ++ ++++++.||+||++..++.... .....+++|+|++|++++|+|++ . .
T Consensus 342 gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~d~~-------~--~ 411 (614)
T PRK08180 342 AGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTG-PLSRAGNIGLPAPGCEVKLVPVG-------G--K 411 (614)
T ss_pred ccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEeccc-ccCCCCcccCccCCcEEEEecCC-------C--C
Confidence 9999999999888753 22 3679999999999865443332 22356799999999999999863 2 2
Q ss_pred eEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEE----ecCceEEEEcccCCeeec-Cceeec--hHH
Q 004815 555 GELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFER----TSGGYYRAHGRADDTMNL-GGIKVS--SVE 627 (729)
Q Consensus 555 Gel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~----~~dG~l~~~GR~d~~iki-~G~ri~--~~e 627 (729)
|||+|.+..+.. .|+++++.|++.|..+ .||+|||+|++ ++||+++|+||+||+||+ +|++|+ +.|
T Consensus 412 GEi~vrg~~v~~-GY~~~p~~t~~~~~~d------gw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~E 484 (614)
T PRK08180 412 LEVRVKGPNVTP-GYWRAPELTAEAFDEE------GYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLR 484 (614)
T ss_pred cEEEEecCccch-hhcCChhHhHhhcccC------CceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhh
Confidence 999996544322 2466788888777532 39999999999 578999999999999985 798776 788
Q ss_pred HHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCC--------------CCCChHHHHHHHHHHHHhhC----C
Q 004815 628 IERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNY--------------TPPDLNQLRMSFNSAVQKKL----N 689 (729)
Q Consensus 628 IE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~--------------~~~~~~~l~~~l~~~l~~~L----~ 689 (729)
||.++. .||.|.+|+|++.++ ..+.|+|++++ +. +..+.+++++++++.|.+.- +
T Consensus 485 ie~~l~-~~p~V~~a~V~g~~~-----~~~~a~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 557 (614)
T PRK08180 485 ARAVSA-GAPLVQDVVITGHDR-----DEIGLLVFPNL-DACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATG 557 (614)
T ss_pred HHHHhh-cCchhheEEEEcCCC-----CceEEEEEcCH-HHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccc
Confidence 999884 899999999999865 45788888765 21 00234556776665554432 2
Q ss_pred CCCccceEEeCCCCCCCCCC------hhhHHHHHHHHHh
Q 004815 690 PLFKVSHVVPLPSLPRTATN------KVMRRVLRKQLAQ 722 (729)
Q Consensus 690 ~~~~P~~i~~v~~lP~t~~G------KidR~~L~~~~~~ 722 (729)
.+.+|.+|++++++|+|++| |+.|+++.+.+++
T Consensus 558 ~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~ 596 (614)
T PRK08180 558 SSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAA 596 (614)
T ss_pred cHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHH
Confidence 23389999999999987655 7788888877765
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=543.69 Aligned_cols=479 Identities=21% Similarity=0.159 Sum_probs=383.7
Q ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEe
Q 004815 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQ 289 (729)
Q Consensus 210 ~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~ 289 (729)
.+||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++++++++++++
T Consensus 11 ~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~ 90 (502)
T PRK08276 11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS 90 (502)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cceecCCccccchhhHHhhcC--CcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccC
Q 004815 290 DLIIRGDKSIPLYSRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSG 367 (729)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 367 (729)
+... ........... ...+.+.... ......|.+...... .......++.++++||||
T Consensus 91 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~~~~~~~~~~a~i~~TSG 150 (502)
T PRK08276 91 AALA------DTAAELAAELPAGVPLLLVVAGP-------VPGFRSYEEALAAQP-------DTPIADETAGADMLYSSG 150 (502)
T ss_pred cchh------hHHHHHhhhccccccEEEEeCCC-------CCccccHHHHHhcCC-------CCCCCCCCcceEEEECCC
Confidence 7532 11112222221 1222222110 012233444332111 111224567899999999
Q ss_pred CCCCCceEEeCCchHHHH------HHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHH
Q 004815 368 TTGEPKAIPWTNATPFKA------AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKF 441 (729)
Q Consensus 368 STG~PKgV~~sh~~l~~~------~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~ 441 (729)
|||.||||+++|.++... .......+....++++++..++.|..+....+.++..|+++++.+. .++..+++.
T Consensus 151 tTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 229 (502)
T PRK08276 151 TTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEK-FDAEEALAL 229 (502)
T ss_pred CCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCC-CCHHHHHHH
Confidence 999999999998875432 1222223334578899999999999988766789999999988764 678899999
Q ss_pred HHHcCCcEEEecHHHHHHHHhcCCC--CCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCc
Q 004815 442 VQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL 519 (729)
Q Consensus 442 i~~~~vt~~~~~P~~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~ 519 (729)
++++++|++.++|+++..+++.... ...+++++|.+++||++++.++.+++.+.++ .++++.||+||++.++.....
T Consensus 230 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~-~~~~~~yG~tE~~~~~~~~~~ 308 (502)
T PRK08276 230 IERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG-PIIHEYYASSEGGGVTVITSE 308 (502)
T ss_pred HHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhC-cHhhhhcccccccceeEecCc
Confidence 9999999999999999999876532 3456889999999999999999999887664 779999999999875444332
Q ss_pred ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEE
Q 004815 520 LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFE 599 (729)
Q Consensus 520 ~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~ 599 (729)
......+++|+|+ ++.++|+|+++++++.|+. |||++.+..+.. .|+++++.+...|..+ .||+|||+|+
T Consensus 309 ~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~-gy~~~~~~~~~~~~~~------~~~~TGD~~~ 378 (502)
T PRK08276 309 DWLAHPGSVGKAV-LGEVRILDEDGNELPPGEI--GTVYFEMDGYPF-EYHNDPEKTAAARNPH------GWVTVGDVGY 378 (502)
T ss_pred cccccCCCcceec-ccEEEEECCCCCCCcCCCc--eEEEEECCCccc-hhcCCHHHHHHHhcCC------CceeecceEE
Confidence 2233456899999 8899999999999999986 999997554433 3456777777766643 3999999999
Q ss_pred EecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHH
Q 004815 600 RTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMS 679 (729)
Q Consensus 600 ~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~ 679 (729)
+++||.+++.||.|+++|++|.+|++.|||.+|+ .+|+|.+|+|++..++..+ +.+++++++++ +. ....++.+.
T Consensus 379 ~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~~--~~~~~~~~~ 453 (502)
T PRK08276 379 LDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLV-THPKVADVAVFGVPDEEMG-ERVKAVVQPAD-GA--DAGDALAAE 453 (502)
T ss_pred EcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeCCCcccC-ceEEEEEEECC-CC--CCChhhHHH
Confidence 9999999999999999999999999999999996 8999999999999888777 88999999886 43 233445566
Q ss_pred HHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhh
Q 004815 680 FNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 725 (729)
Q Consensus 680 l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~ 725 (729)
+++.++++|++||+|..++++++||+|++||++|++|++.+.+-.+
T Consensus 454 i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~~ 499 (502)
T PRK08276 454 LIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEGRQ 499 (502)
T ss_pred HHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhhhh
Confidence 7778999999999999999999999999999999999999876444
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-61 Score=545.96 Aligned_cols=510 Identities=19% Similarity=0.181 Sum_probs=387.0
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
...|.+.++++|+++|+++.+. .+||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++|
T Consensus 21 ~~~~~~~~~~~~~~~a~~~~~~--------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G 92 (545)
T PRK08162 21 LSFLERAAEVYPDRPAVIHGDR--------RRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAG 92 (545)
T ss_pred HHHHHHHHHHCCCCeEEEECCe--------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhC
Confidence 3557778889999999998766 89999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
++++|++|.++.+++.+++++++++.++++.... +...+....... ..+++.............+...+..+.
T Consensus 93 ~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (545)
T PRK08162 93 AVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFA------EVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFL 166 (545)
T ss_pred cEEeccccccChHHHHHHHHhCCCeEEEEccchh------hHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHh
Confidence 9999999999999999999999999999987532 122222222222 133333221110000011223455554
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHH
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~ 418 (729)
..... ..........+++++|+|||||||.||||+++|+++..........+++..++++++..|+.|..+....+.
T Consensus 167 ~~~~~---~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~ 243 (545)
T PRK08162 167 ASGDP---DFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWT 243 (545)
T ss_pred ccCCc---cccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHH
Confidence 32111 111111223467999999999999999999999988766655566678889999999999999888744333
Q ss_pred HhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCC
Q 004815 419 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 498 (729)
Q Consensus 419 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~ 498 (729)
..+.|++.++.. ..++..+++.|+++++|++.++|+++..|++........+.+++.++++|+.+++...+++.. . +
T Consensus 244 ~~~~~g~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-~ 320 (545)
T PRK08162 244 VAARAGTNVCLR-KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEE-I-G 320 (545)
T ss_pred HHHHccEEEEeC-CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHH-h-C
Confidence 444555555544 367889999999999999999999999998765433334556677889999999998888765 3 5
Q ss_pred CCeeecccccccccccccCCcc------c----ccccccccCCCC-CcEEEEEcC-CCCccCCCCCceeEEEeeccccCC
Q 004815 499 KPVIEYCGGTEIGGGFITGSLL------Q----AQSLAAFSTPAM-GCKLFILGN-DGCPIPQNVPGMGELALSPLIFGA 566 (729)
Q Consensus 499 ~~l~~~YG~TE~~~~~~~~~~~------~----~~~~~~iG~p~~-~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~ 566 (729)
+++++.||+||++..+...... . .....+.|.+.+ +..++|+|+ +++++|.+...+|||+|++..+..
T Consensus 321 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~ 400 (545)
T PRK08162 321 FDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMK 400 (545)
T ss_pred CceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchh
Confidence 8899999999986433322110 0 011245666655 346889995 688887632115999996654433
Q ss_pred CcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEe
Q 004815 567 SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIG 646 (729)
Q Consensus 567 ~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~ 646 (729)
.|+++++.+...|.. | ||+|||+|++++||+++++||.||+||++|.+|+|.|||++|. .||+|.+|+|++
T Consensus 401 -gY~~~~~~~~~~~~~-----g--~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~ 471 (545)
T PRK08162 401 -GYLKNPKATEEAFAG-----G--WFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLY-RHPAVLVAAVVA 471 (545)
T ss_pred -hhcCChhhhHHHhhC-----C--CcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHH-hCCcccEEEEEe
Confidence 246677777777742 3 9999999999999999999999999999999999999999995 999999999999
Q ss_pred ecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhhc
Q 004815 647 VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 726 (729)
Q Consensus 647 ~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~~ 726 (729)
.+++..+ +.+++++++++ +. ..+.+++++ ++++.||+|++|..+++ ++||+|+|||++|+.|++++.++.+.
T Consensus 472 ~~~~~~~-~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~l~~~ 543 (545)
T PRK08162 472 KPDPKWG-EVPCAFVELKD-GA-SATEEEIIA----HCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKSLKAI 543 (545)
T ss_pred eeccccC-ceEEEEEEeCC-CC-CCCHHHHHH----HHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhhhhhh
Confidence 9887766 78999999886 43 345555544 67788999999998875 68999999999999999999887653
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=594.31 Aligned_cols=494 Identities=15% Similarity=0.147 Sum_probs=383.6
Q ss_pred hhhccccCCCC-CCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 181 NCLSVNSKRSL-DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 181 ~~l~~~~~~~p-d~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
+.|.++++++| +++|+.+.+. +++||+||+++++++|++|++ |+++||+|+++++|++++++++|||+++|
T Consensus 635 ~~l~~~~~~~~~~~~ai~~~~~-------~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G 706 (1140)
T PRK06814 635 EALIEAAKIHGFKKLAVEDPVN-------GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAG 706 (1140)
T ss_pred HHHHHHHHHcCCCCeEeECCCC-------CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCC
Confidence 34555666665 6778776332 289999999999999999975 99999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
++++|+||.++.+++.+++++++++++++++......+ .....+.... .++.++.... ....++.+
T Consensus 707 ~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~ 774 (1140)
T PRK06814 707 RVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKAR----LGPLIEALEFGIRIIYLEDVRA--------QIGLADKI 774 (1140)
T ss_pred CEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhc----chhHHHHhccCceEEEehHhhc--------cCChHHHH
Confidence 99999999999999999999999999999875332111 1111121211 2222221100 01111111
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HHH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLV 416 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i 416 (729)
...... .....+.....+++++|++|||||||.||||+++|+++.+.+......++++++|++++.+|+.|.++. ..+
T Consensus 775 ~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 853 (1140)
T PRK06814 775 KGLLAG-RFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGL 853 (1140)
T ss_pred HHHhhc-cCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHH
Confidence 111110 001111113578999999999999999999999999999988888888999999999999999999998 778
Q ss_pred HHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
+.++..|+++++.+...+...+.+.++++++|++..+|++++.+.+.. ...+++++|.+++|||++++++.+++.+.+
T Consensus 854 ~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~ 931 (1140)
T PRK06814 854 VLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF 931 (1140)
T ss_pred HHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh
Confidence 899999999999876556667889999999999999999999987653 345678999999999999999998888776
Q ss_pred CCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY 576 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~ 576 (729)
+++++|.||+||++..+..... ......++|+|++|+++++.+..+ .|+. |||++.+.....+| +++++.
T Consensus 932 -~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~g~~~~~~~~~~----~~~~--Gel~v~g~~~~~gY-~~~~~~- 1001 (1140)
T PRK06814 932 -GIRILEGYGVTETAPVIALNTP-MHNKAGTVGRLLPGIEYRLEPVPG----IDEG--GRLFVRGPNVMLGY-LRAENP- 1001 (1140)
T ss_pred -CCcEEeccccccccceEEecCC-CCCCCCcCCccCCCCeEEEeecCC----CCCc--eEEEEeCCCcchhh-cCCCCC-
Confidence 4789999999999875544332 223457899999999999987543 3554 99999665443332 333221
Q ss_pred ccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCcee
Q 004815 577 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQ 656 (729)
Q Consensus 577 ~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 656 (729)
..+.. .+++||+|||+|++|+||+++++||.||+||++|++|+|.|||++|. +||.|.+|+|++++++..| +.
T Consensus 1002 -~~~~~----~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~~~~~~~g-~~ 1074 (1140)
T PRK06814 1002 -GVLEP----PADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAA-ELWPDALHAAVSIPDARKG-ER 1074 (1140)
T ss_pred -Ccccc----CCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHH-hcCCcccEEEEEcccCCCC-ce
Confidence 11111 12349999999999999999999999999999999999999999995 9999999999999998877 67
Q ss_pred EEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 657 LTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 657 l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
+++++. .. +.+.++++++ +++ .+++|++|..|++++++|+|++||+||++|+++..+.
T Consensus 1075 ~~~~~~-~~----~~~~~~l~~~----~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 1133 (1140)
T PRK06814 1075 IILLTT-AS----DATRAAFLAH----AKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEA 1133 (1140)
T ss_pred EEEEEc-CC----CcCHHHHHHH----HHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence 777654 22 3455666664 444 5999999999999999999999999999999998874
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=537.65 Aligned_cols=446 Identities=19% Similarity=0.170 Sum_probs=367.4
Q ss_pred hccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEE
Q 004815 183 LSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262 (729)
Q Consensus 183 l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~ 262 (729)
...+++++|+++|+++.++ .+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 9 ~~~~a~~~~~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~ 80 (458)
T PRK09029 9 WRHWAQVRPQAIALRLNDE--------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARV 80 (458)
T ss_pred HHHHHHhCCCceeeecCCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEE
Confidence 3445678999999998766 89999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhh
Q 004815 263 VSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVR 342 (729)
Q Consensus 263 vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (729)
+|++|..+.+++..++++++++++++++.... . .. .. ...+. ..
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~---~~----~~--------------------~~~~~-----~~ 124 (458)
T PRK09029 81 LPLNPQLPQPLLEELLPSLTLDFALVLEGENT----F---SA----LT--------------------SLHLQ-----LV 124 (458)
T ss_pred eecCCCCCHHHHHHHHHhcCCCEEEEcCcccc----h---hh----cc--------------------ccccc-----cc
Confidence 99999999999999999999999999875210 0 00 00 00000 00
Q ss_pred ccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhc
Q 004815 343 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLN 422 (729)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~ 422 (729)
.........++++++++|||||||.||||+++|++++..+......+++.++|+++...|+.|.++...++.+|..
T Consensus 125 ----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~ 200 (458)
T PRK09029 125 ----EGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYA 200 (458)
T ss_pred ----cccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhC
Confidence 0111233467899999999999999999999999999988888788899999999999999999998777789999
Q ss_pred CceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCee
Q 004815 423 GASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVI 502 (729)
Q Consensus 423 G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 502 (729)
|+++++.+. ..+++.+ +++|.+..+|+++..++..... ..++|.+++||+++++.+.+++... +.+++
T Consensus 201 G~~v~~~~~----~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~ 268 (458)
T PRK09029 201 GATLVVRDK----QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCW 268 (458)
T ss_pred CceEEeCCh----HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEe
Confidence 999998764 4567777 4899999999999998865432 3579999999999999998887653 58899
Q ss_pred ecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccccccccc
Q 004815 503 EYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG 582 (729)
Q Consensus 503 ~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~ 582 (729)
+.||+||++...+.... ....++|+|++|++++|+| |||+|.+.....+| +++++.+...
T Consensus 269 ~~YG~tE~~~~~~~~~~---~~~~~~G~~~~~~~~~i~~-------------gel~v~g~~~~~gY-~~~~~~~~~~--- 328 (458)
T PRK09029 269 CGYGLTEMASTVCAKRA---DGLAGVGSPLPGREVKLVD-------------GEIWLRGASLALGY-WRQGQLVPLV--- 328 (458)
T ss_pred ccccccccCcceeccCC---CCCCCCCCCCCCCEEEEeC-------------CEEEEecCceeeee-ecCccccccc---
Confidence 99999999864433222 2235699999999999986 79999655443322 3444443211
Q ss_pred ccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEE
Q 004815 583 MPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVV 662 (729)
Q Consensus 583 ~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv 662 (729)
.+.+||+|||+|+++ ||+++++||+||+||++|++|+|.|||++|. .||+|.+|+|++.+++..| +.++++|+
T Consensus 329 ----~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~v~ 401 (458)
T PRK09029 329 ----NDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVIN-QHPLVQQVFVVPVADAEFG-QRPVAVVE 401 (458)
T ss_pred ----cCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHh-cCCCcceEEEEccCCcccC-ceEEEEEE
Confidence 133599999999999 9999999999999999999999999999995 9999999999999998877 78999998
Q ss_pred ecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 663 FKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 663 ~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
.+. ..+.+++++ +++++||+|++|..|++++++|+|.+||++|+.|++++.+.
T Consensus 402 ~~~----~~~~~~l~~----~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~ 454 (458)
T PRK09029 402 SDS----EAAVVNLAE----WLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQ 454 (458)
T ss_pred cCc----ccCHHHHHH----HHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhc
Confidence 764 345555555 57788999999999999999999999999999999998863
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=557.34 Aligned_cols=522 Identities=20% Similarity=0.181 Sum_probs=385.4
Q ss_pred cchHHhhhhccccCCCCCCeEEEEeec-CCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Q 004815 175 FVNPAKNCLSVNSKRSLDDIVIRWCDE-GDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL 253 (729)
Q Consensus 175 ~~~~~~~~l~~~~~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~L 253 (729)
..+...++|.+.++++|+++|+.+... .+..+.+..+||+||.++++++|..|.+.|+++||+|+|+++|+++|++++|
T Consensus 40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l 119 (660)
T PLN02430 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME 119 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 445667888888999999999976431 1112344568999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC--CcEEEEcCCCCCccc---ccC
Q 004815 254 AIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA--PLAIVIPAKGSSFSM---KLR 328 (729)
Q Consensus 254 A~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~---~~~ 328 (729)
||+++|+++||+++.++.+++.+++++++++++|+++... ...........+ ..++.+......... ...
T Consensus 120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 194 (660)
T PLN02430 120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKI-----KELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIG 194 (660)
T ss_pred HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHH-----HHHHhhhcccCCCceEEEEECCCChHHhhhhhcCC
Confidence 9999999999999999999999999999999999986411 000101111111 122333211100000 000
Q ss_pred CCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh-----CCCCCCCEEEE
Q 004815 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH-----MDIRKADIVAW 403 (729)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-----~~~~~~d~~l~ 403 (729)
....+|++++...... + .......++++++|+|||||||.||||++||++++..+...... .+++++|++++
T Consensus 195 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls 271 (660)
T PLN02430 195 VKTYSWIDFLHMGKEN-P--SETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLS 271 (660)
T ss_pred cEEEEHHHHHHhhccC-C--CCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEE
Confidence 0124577766544321 1 11223468999999999999999999999999998876654322 25788999999
Q ss_pred ccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC-----CC-----------
Q 004815 404 PTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-----ID----------- 467 (729)
Q Consensus 404 ~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~-----~~----------- 467 (729)
++|++|.++....+.++..|++++++.+ ++..+++.|+++++|++.++|.+++.+.+... ..
T Consensus 272 ~lPl~H~~~~~~~~~~l~~G~~i~~~~~--~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 349 (660)
T PLN02430 272 FLPLAHILDRMIEEYFFRKGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALY 349 (660)
T ss_pred eCcHHHHHHHHHHHHHHHcCCEEEEeCC--ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999988655667899999988754 55789999999999999999999987764200 00
Q ss_pred ---------------CC---C----------C-CCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCC
Q 004815 468 ---------------GY---D----------W-SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGS 518 (729)
Q Consensus 468 ---------------~~---~----------l-~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~ 518 (729)
.. + + ++||.+++||+++++++.++++ .++.+++++.||+||+++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~TE~~~~~~~~~ 428 (660)
T PLN02430 350 KYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLTETLGPTTLGF 428 (660)
T ss_pred HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecchhhhhhceEeec
Confidence 00 0 1 5799999999999999866554 455578999999999987554443
Q ss_pred cccccccccccCCCCCcEEEEEc--CCC-CccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeC
Q 004815 519 LLQAQSLAAFSTPAMGCKLFILG--NDG-CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG 595 (729)
Q Consensus 519 ~~~~~~~~~iG~p~~~~~~~v~d--~~g-~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TG 595 (729)
.......+++|+|++++++++.| +.| .+++.+.. |||+|.+..+..+ |+++++.|++.|. +| ||+||
T Consensus 429 ~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~--GEi~vrg~~v~~G-Y~~~~e~t~~~~~-----dG--w~~TG 498 (660)
T PLN02430 429 PDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPR--GEICVRGKCLFSG-YYKNPELTEEVMK-----DG--WFHTG 498 (660)
T ss_pred cccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCc--ceEEecCCCcccc-ccCChHHhhhhhh-----cc--ceecc
Confidence 33333467999999999999987 333 44555544 9999955433322 4678888888773 13 99999
Q ss_pred ceEEEecCceEEEEcccCCeeec-CceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCC--------
Q 004815 596 DVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS-------- 666 (729)
Q Consensus 596 Dl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~-------- 666 (729)
|+|++++||+|+++||+||+||. +|++|+|.+||++| .+||.|.+|+|++.. .+ +.++|+|+++..
T Consensus 499 Dig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l-~~~p~V~~~~V~G~~---~~-~~~~A~vv~~~~~~~~~~~~ 573 (660)
T PLN02430 499 DIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVY-GQNPIVEDIWVYGDS---FK-SMLVAVVVPNEENTNKWAKD 573 (660)
T ss_pred ceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHH-hcCCCeeEEEEEecC---Cc-ceEEEEEEcCHHHHHHHHHh
Confidence 99999999999999999999997 69999999999999 599999999999832 23 689999998641
Q ss_pred -CCC-C----CChHHHHHHHHHHHH-----hhCCCCCccceEEeCCC-C-----CCCCCChhhHHHHHHHHHh
Q 004815 667 -NYT-P----PDLNQLRMSFNSAVQ-----KKLNPLFKVSHVVPLPS-L-----PRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 667 -~~~-~----~~~~~l~~~l~~~l~-----~~L~~~~~P~~i~~v~~-l-----P~t~~GKidR~~L~~~~~~ 722 (729)
+.. . ....++++.+.+.+. .+|+.|.+++.|+++++ + .+|+++|+.|+.+.+.+.+
T Consensus 574 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02430 574 NGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQV 646 (660)
T ss_pred CCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHH
Confidence 110 0 111334444433332 35999999999888654 3 5999999999999888765
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=525.09 Aligned_cols=407 Identities=17% Similarity=0.149 Sum_probs=348.1
Q ss_pred EEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHH
Q 004815 195 VIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEI 274 (729)
Q Consensus 195 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l 274 (729)
|+++.++ ++||+||.++++++|+.|. .|+++|++|+|+++|+++++++++|++++|++++|+||..+.+++
T Consensus 1 ~~~~~~~--------~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~ 71 (414)
T PRK08308 1 MLIVNDE--------EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAA 71 (414)
T ss_pred CeEecCc--------eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHH
Confidence 4667666 9999999999999999985 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccccccC
Q 004815 275 SARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQ 354 (729)
Q Consensus 275 ~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (729)
..++++++++++++++... . . . .....
T Consensus 72 ~~~~~~~~~~~~i~~~~~~------~---------------~-------------~-------------------~~~~~ 98 (414)
T PRK08308 72 IRMAKRAGCHGLLYGESDF------T---------------K-------------L-------------------EAVNY 98 (414)
T ss_pred HHHHHhCCCCEEEecCccc------c---------------c-------------c-------------------cCCCC
Confidence 9999999999999876210 0 0 0 00112
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSP 433 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~ 433 (729)
.+++++|++|||||||.||||+++|+++.+.+.+....+++..+|+++..+|+.|++++ ..++.+|..|+++++.+. .
T Consensus 99 ~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~-~ 177 (414)
T PRK08308 99 LAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITN-K 177 (414)
T ss_pred CCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCC-C
Confidence 46789999999999999999999999999988888888899999999999999999987 578899999999999864 5
Q ss_pred ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccc
Q 004815 434 LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGG 513 (729)
Q Consensus 434 ~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~ 513 (729)
++..+++.++++++|++.++|+++..+.+.... ..+++.+++||++++++..+++++. ..+++|.||+||++..
T Consensus 178 ~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~ 251 (414)
T PRK08308 178 NPKFALNILRNTPQHILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCV 251 (414)
T ss_pred CHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCe
Confidence 788899999999999999999999999875421 1368899999999999999888765 3689999999999854
Q ss_pred cccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEE
Q 004815 514 FITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRR 593 (729)
Q Consensus 514 ~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~ 593 (729)
..... .....++|+|++++++++.+.. |.+ |||++... .+||+
T Consensus 252 ~~~~~---~~~~~~~G~p~~~~~~~~~~~~------~~~--gel~v~~~--------------------------~~~~~ 294 (414)
T PRK08308 252 SICPD---MKSHLDLGNPLPHVSVSAGSDE------NAP--EEIVVKMG--------------------------DKEIF 294 (414)
T ss_pred eecCC---CCCCCccCccCCCeEEEEecCC------CCC--ceEEEEcC--------------------------CceEE
Confidence 32211 1234679999999999998643 444 99988421 23999
Q ss_pred eCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCCh
Q 004815 594 HGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 673 (729)
Q Consensus 594 TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~ 673 (729)
|||+|++++||+++++||.|++||++|++|+|.|||++|. .+|+|.+|+|++.+++..+ +.++++++.+. ..+.
T Consensus 295 TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~-~~~~v~~a~v~~~~~~~~~-~~~~~~v~~~~----~~~~ 368 (414)
T PRK08308 295 TKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVML-RLPGVQEAVVYRGKDPVAG-ERVKAKVISHE----EIDP 368 (414)
T ss_pred CCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCC----CCCH
Confidence 9999999999999999999999999999999999999995 8999999999999988777 78889988765 3455
Q ss_pred HHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 674 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 674 ~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
+++++ +++++|++|++|..++++++||+|++||++|++|+
T Consensus 369 ~~l~~----~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 369 VQLRE----WCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred HHHHH----HHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 66655 57788999999999999999999999999999654
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=570.69 Aligned_cols=554 Identities=18% Similarity=0.187 Sum_probs=441.7
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCCCC--chhheeeeeecCCC-CC---C--CCCccCC
Q 004815 18 EALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPF--SFHQLLYYGCYKDF-GP---D--PPAWIPD 87 (729)
Q Consensus 18 ~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r~~--~~~~~~f~~~~~~~-~~---~--~~~~~~~ 87 (729)
..++.......+|.+++++++++.+. +||++||+++++.+.+.|.. |+|+++|..++... .. + ...+...
T Consensus 68 ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~h~~~p~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (642)
T COG1020 68 LPLRLDISGRVTFAELLARLRELALGALEHQDLPGEQLVERLGRERSLSEPLFDVVFVLQNGPTAGLKLPGLRVEELGIE 147 (642)
T ss_pred eeeeeccCCCCCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHhhhccCCCCceeeEEEecCccccccccccccccccccc
Confidence 46677778888999999999998887 99999999999999988764 69999888888665 10 0 0111111
Q ss_pred hhhhhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCC
Q 004815 88 PEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNP 166 (729)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (729)
....++|+.+.+.+. ++...+ |.+ ++|++.+++++..||..++..+. ..+...+...++....+.
T Consensus 148 -~~~~~~d~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~l~ll~~~e~-- 213 (642)
T COG1020 148 -TPAAKLDLALAVVEG--GLRLSFDYAR-----ELFDAETIERELRHFLQLLAALA----DAPRTSLSALPLLLPSER-- 213 (642)
T ss_pred -CcccccceEEEEEeC--ceEEEEEeec-----ccCCHHHHHHHHHHHHHHHHHHH----hCcccCcccCCCCCHHHH--
Confidence 234677777766555 566667 877 99999999999999999999873 333344444443332222
Q ss_pred CCCcCCCCc----chHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEC
Q 004815 167 GGQWLPGAF----VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDM 242 (729)
Q Consensus 167 ~~~~~~~~~----~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~ 242 (729)
..|+.... ....+..|.+++.++|+++|+++.+. ++||+||+.+++++|+.|.+.|++++++|++++
T Consensus 214 -~~~~~~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~~~--------~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~ 284 (642)
T COG1020 214 -EVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQ--------QLTYAELDARANRLARLLISLGVGPGETVAILA 284 (642)
T ss_pred -hhccccccCCCccchHHHHHHHHHHhCCCceeEecCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEc
Confidence 33551111 12356778888999999999999866 999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCC
Q 004815 243 PMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSS 322 (729)
Q Consensus 243 ~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 322 (729)
+++++++++++|++|+|++|+|+||.+|.+|+.+++++++++++++..........++.
T Consensus 285 ~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------- 343 (642)
T COG1020 285 DRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG--------------------- 343 (642)
T ss_pred CCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc---------------------
Confidence 99999999999999999999999999999999999999999999998542211001000
Q ss_pred cccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEE
Q 004815 323 FSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVA 402 (729)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l 402 (729)
...+...... ...........+++++|++|||||||+||||+++|+++++.+.+....+.++.+|+++
T Consensus 344 ---------~~~~~~~~~~---~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l 411 (642)
T COG1020 344 ---------LALDDALSEI---PDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVL 411 (642)
T ss_pred ---------cccccccccC---CccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEe
Confidence 0000000000 0000011234568999999999999999999999999999999998889999999999
Q ss_pred EccCcchhhhHHHHHHHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC--CCCCCCCccEEE
Q 004815 403 WPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFG 478 (729)
Q Consensus 403 ~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~--~~~~l~sLr~v~ 478 (729)
..++++||.+.+++|.+++.|+++++.+.. .++..+.+.++++++|++..+|.++..++..... .....+.+|.++
T Consensus 412 ~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~ 491 (642)
T COG1020 412 ALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLL 491 (642)
T ss_pred ecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEE
Confidence 999999999999999999999999998754 3777899999999999999999999998876221 122234599999
Q ss_pred eecCCCCHhHHHHHHhccC-CCCeeecccccccccccccCCcccccc-cccccCCCCCcEEEEEcCCCCccCCCCCceeE
Q 004815 479 STGEASNVDEYLWLMGRAL-YKPVIEYCGGTEIGGGFITGSLLQAQS-LAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 556 (729)
Q Consensus 479 ~gGe~l~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~-~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGe 556 (729)
+|||.++..+...+..... ...+.|.||+||+++............ ..++|+|++|++++|+|+.++++|.|++ ||
T Consensus 492 ~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~--ge 569 (642)
T COG1020 492 SGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVP--GE 569 (642)
T ss_pred EcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCC--ee
Confidence 9999999999987765544 467999999999776544433322111 5799999999999999999999999998 99
Q ss_pred EEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCC
Q 004815 557 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 636 (729)
Q Consensus 557 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~ 636 (729)
+++++..+..+ |+++++.|+++|..+ ++|+|||++|+++||.++|+||.|+|||++|+||+++|||.++. ++
T Consensus 570 l~i~g~~~a~g-y~~~p~lt~~~f~~~------~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~-~~ 641 (642)
T COG1020 570 LYIAGLGLALG-YLNRPDLTAERFIAL------RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALA-EQ 641 (642)
T ss_pred eEECCcchhhh-hcCChhhhHHHhhhc------cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHh-cC
Confidence 99988877765 578999999999976 49999999999999999999999999999999999999999994 66
Q ss_pred C
Q 004815 637 S 637 (729)
Q Consensus 637 p 637 (729)
|
T Consensus 642 ~ 642 (642)
T COG1020 642 P 642 (642)
T ss_pred C
Confidence 5
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-60 Score=541.99 Aligned_cols=501 Identities=18% Similarity=0.177 Sum_probs=366.0
Q ss_pred hhhccccCCCCCCeEEEEeecC-CCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 181 NCLSVNSKRSLDDIVIRWCDEG-DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
+.|.+++..+|+++|+++.+.. ...+..+++||+||.++++++|++|.+.| ++||+|+|+++|++++++++|||+++|
T Consensus 5 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~~G 83 (578)
T PRK05850 5 SLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQAG 83 (578)
T ss_pred HHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHHHcC
Confidence 5577888899999999975421 01122358999999999999999999999 689999999999999999999999999
Q ss_pred CEEEecCC---CCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC----CcEEEEcCCCCCcccccCCCCc
Q 004815 260 YIVVSIAD---SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA----PLAIVIPAKGSSFSMKLRDGDI 332 (729)
Q Consensus 260 a~~vpldp---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~ 332 (729)
++++|+++ ..+.+++.+++++++++++++++.... .......... ..++.+..
T Consensus 84 ~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------------- 143 (578)
T PRK05850 84 LIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVD------DVTEYVAPQPGQSAPPVIEVDL-------------- 143 (578)
T ss_pred ceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHH------HHHHHHhhcccccccceEeecc--------------
Confidence 99999997 457899999999999999999875321 1111111000 00111100
Q ss_pred CHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh-CC-----CCCCCEEEEccC
Q 004815 333 SWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH-MD-----IRKADIVAWPTN 406 (729)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-~~-----~~~~d~~l~~~~ 406 (729)
...... .........+++++||+|||||||.||||+++|+++++.+...... +. ...++++++..|
T Consensus 144 -----~~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 215 (578)
T PRK05850 144 -----LDLDSP---RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLP 215 (578)
T ss_pred -----cccccC---CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECC
Confidence 000000 0001123467899999999999999999999999998876655432 22 356889999999
Q ss_pred cchhhhH-HHHHHHhhcCceEEEeCCC---CChhhHHHHHHHcCCcEEEecHHH-HHHHHhcC---CCCCCCCCCccEEE
Q 004815 407 LGWMMGP-WLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSI-VRTWKSTN---CIDGYDWSSIRCFG 478 (729)
Q Consensus 407 ~~~~~~~-~~i~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~-l~~l~~~~---~~~~~~l~sLr~v~ 478 (729)
+.|+++. ..++.+++.|+++++.+.. .++..+++++++++++.+. +|++ +..+.... .....+++++|.++
T Consensus 216 l~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 294 (578)
T PRK05850 216 FYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFSA-APNFAFELAVRKTSDDDMAGLDLGGVLGII 294 (578)
T ss_pred CCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEEe-CCcHHHHHHHHhcchhhhcCcchhhheeEE
Confidence 9999997 5689999999999998642 2678899999999998664 5554 44443321 11234578999999
Q ss_pred eecCCCCHhHHHHHHhccC-----CCCeeecccccccccccccCCcccc------------------------ccccccc
Q 004815 479 STGEASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQA------------------------QSLAAFS 529 (729)
Q Consensus 479 ~gGe~l~~~~~~~~~~~~~-----~~~l~~~YG~TE~~~~~~~~~~~~~------------------------~~~~~iG 529 (729)
+||+++++++.+++.+.++ +..+++.||+||++..+.......+ ....++|
T Consensus 295 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g 374 (578)
T PRK05850 295 SGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYG 374 (578)
T ss_pred ECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEecc
Confidence 9999999999988877653 3468999999998754333211100 0112456
Q ss_pred CCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccccCCCccccccccccccccc---ccC--CCCceeEEeCceEEEecC
Q 004815 530 TPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG---MPS--RNGQILRRHGDVFERTSG 603 (729)
Q Consensus 530 ~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~---~p~--~~g~~~y~TGDl~~~~~d 603 (729)
.|. +.+++|+|+ +++++|.|+. |||+|.+..+..+ |+++++.+++.|.. +|. ..+.+||+|||+|+++ |
T Consensus 375 ~p~-~~~~~ivd~~~~~~~~~g~~--Gel~v~g~~~~~g-Y~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~ 449 (578)
T PRK05850 375 SPR-SPTVRIVDPDTCIECPAGTV--GEIWVHGDNVAAG-YWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-E 449 (578)
T ss_pred CCC-CCEEEEEcCCCCcCCCCCCE--EEEEEecCccccc-ccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-C
Confidence 664 688999995 5789999986 9999966554433 46788888888853 121 1123599999999998 9
Q ss_pred ceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHH--HHHHHH
Q 004815 604 GYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQ--LRMSFN 681 (729)
Q Consensus 604 G~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~--l~~~l~ 681 (729)
|+++++||.||+||++|++|+|.|||++|. +||.+ +|+|+++++. .+ +.++|+|++++ +. ..+.++ ....++
T Consensus 450 G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~-~~~~~-~~~v~~v~~~-~~-~~~~a~v~~~~-~~-~~~~~~~~~~~~l~ 523 (578)
T PRK05850 450 GELFIVGRIKDLLIVDGRNHYPDDIEATIQ-EITGG-RVAAISVPDD-GT-EKLVAIIELKK-RG-DSDEEAMDRLRTVK 523 (578)
T ss_pred CEEEEEcccccEEEECCeecCHHHHHHHHH-HhcCC-cEEEEEecCC-Cc-eEEEEEEEecc-cc-CcchhhhhhHHHHH
Confidence 999999999999999999999999999995 89985 5788888876 45 78999999887 43 222221 223344
Q ss_pred HHHHhhCCC--CCccceEEeC--CCCCCCCCChhhHHHHHHHHHh
Q 004815 682 SAVQKKLNP--LFKVSHVVPL--PSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 682 ~~l~~~L~~--~~~P~~i~~v--~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+.+...++. ++.|..++++ ++||+|++|||+|++|++.+.+
T Consensus 524 ~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~ 568 (578)
T PRK05850 524 REVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQ 568 (578)
T ss_pred HHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHc
Confidence 444443332 2456666666 4899999999999999999865
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-60 Score=541.03 Aligned_cols=495 Identities=17% Similarity=0.170 Sum_probs=375.9
Q ss_pred hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
....++|...++++|+.+ ++..++ +..+.+||.||+++++++|.+|+++|+++||+|+++++|++++++++|||+
T Consensus 21 ~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~ 95 (579)
T PRK09192 21 PTLVEALDYAALGEAGMN-FYDRRG----QLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQ 95 (579)
T ss_pred hhHHHHHHHhhccCCceE-EEecCC----CEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence 345677887777777554 443222 223589999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCC-------HHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCC
Q 004815 257 LAGYIVVSIADSFA-------SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRD 329 (729)
Q Consensus 257 ~aGa~~vpldp~~~-------~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 329 (729)
++|++++|+|+.++ .+++.++++.++++++|+++... +....+..... ...
T Consensus 96 ~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~------~~~~~~~~~~~-~~~--------------- 153 (579)
T PRK09192 96 YAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELL------PWVNEATHGNP-LLH--------------- 153 (579)
T ss_pred HcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHH------HHHHHhhcccc-ccc---------------
Confidence 99999999987543 68999999999999999987522 11111110000 000
Q ss_pred CCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHh-hCCCCCCCEEEEccCcc
Q 004815 330 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC-HMDIRKADIVAWPTNLG 408 (729)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~d~~l~~~~~~ 408 (729)
...+.++..... .........+++++||+|||||||.||||+++|++++..+..... .+++.++|+++...|+.
T Consensus 154 -~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 228 (579)
T PRK09192 154 -VLSHAWFKALPE----ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFY 228 (579)
T ss_pred -eeehhhhcccCC----CccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCC
Confidence 112222221111 011122346789999999999999999999999999988877776 78999999999999999
Q ss_pred hhhhHH-HHHHHhhcCceEEEeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC---CCCCCCCCccEEEeec
Q 004815 409 WMMGPW-LVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC---IDGYDWSSIRCFGSTG 481 (729)
Q Consensus 409 ~~~~~~-~i~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~---~~~~~l~sLr~v~~gG 481 (729)
|+++.. .++.++..|+++++.+.. .++..+++.+.++++|++..+|.++..+..... ....+++++|.+++||
T Consensus 229 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG 308 (579)
T PRK09192 229 HDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGA 308 (579)
T ss_pred CcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecC
Confidence 999985 466789999999876522 256778999999999988776666665543221 2235688999999999
Q ss_pred CCCCHhHHHHHHhccC-----CCCeeecccccccccccccCCccc---------------------------cccccccc
Q 004815 482 EASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQ---------------------------AQSLAAFS 529 (729)
Q Consensus 482 e~l~~~~~~~~~~~~~-----~~~l~~~YG~TE~~~~~~~~~~~~---------------------------~~~~~~iG 529 (729)
+++++.+.+.+.+.+. ...+++.||+||++..++...... .....++|
T Consensus 309 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG 388 (579)
T PRK09192 309 DMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCG 388 (579)
T ss_pred ccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecC
Confidence 9999999988876653 135899999999986544322110 01124789
Q ss_pred CCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEE
Q 004815 530 TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAH 609 (729)
Q Consensus 530 ~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~ 609 (729)
+|++|++++|+|++++.++.|+. |||++.+..+..+| +++ +.+...|.. +.||+|||+|++ +||+++|+
T Consensus 389 ~~~p~~~v~i~d~~~~~~~~g~~--Gel~i~g~~~~~gY-~~~-~~~~~~~~~------dgw~~TGDlg~~-~~G~l~~~ 457 (579)
T PRK09192 389 KALPGHEIEIRNEAGMPLPERVV--GHICVRGPSLMSGY-FRD-EESQDVLAA------DGWLDTGDLGYL-LDGYLYIT 457 (579)
T ss_pred CcCCCcEEEEECCCCCCCCCCCE--EEEEecCCchhhhh-cCC-ccccccccC------CceeeccceeeE-ECCEEEEE
Confidence 99999999999999999999986 99999655443332 444 555555543 239999999999 99999999
Q ss_pred cccCCeeecCceeechHHHHHHHhcCCCCee--eeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhh
Q 004815 610 GRADDTMNLGGIKVSSVEIERICNAVDSNVL--ETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK 687 (729)
Q Consensus 610 GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~--~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~ 687 (729)
||+||+||++|++|+|.|||++|. .||+|. +|+|++++++. + +.++++++... +. ..+.+++++++++.+..
T Consensus 458 GR~dd~i~~~G~~v~p~eIE~~l~-~~p~V~~~~~~v~~~~~~~-~-~~~~~~v~~~~-~~-~~~~~~l~~~~~~~l~~- 531 (579)
T PRK09192 458 GRAKDLIIINGRNIWPQDIEWIAE-QEPELRSGDAAAFSIAQEN-G-EKIVLLVQCRI-SD-EERRGQLIHALAALVRS- 531 (579)
T ss_pred eccccEEEECCCccCHHHHHHHHH-hcCCccCCcEEEEEeccCC-C-eeEEEEEEecC-CC-hHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999995 899998 89999998875 4 57888888765 33 34456677765555432
Q ss_pred CCCCCccceEEeCC--CCCCCCCChhhHHHHHHHHHh
Q 004815 688 LNPLFKVSHVVPLP--SLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 688 L~~~~~P~~i~~v~--~lP~t~~GKidR~~L~~~~~~ 722 (729)
.+++|..+++++ +||+|++||++|++|++++.+
T Consensus 532 --~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~ 566 (579)
T PRK09192 532 --EFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLS 566 (579)
T ss_pred --HhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHc
Confidence 467787777774 899999999999999998765
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-60 Score=546.15 Aligned_cols=507 Identities=16% Similarity=0.147 Sum_probs=373.6
Q ss_pred chHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Q 004815 176 VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAI 255 (729)
Q Consensus 176 ~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~ 255 (729)
.....++|+++++++||++|+++.+.. .+.++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus 48 ~~~l~~~l~~~a~~~pd~~a~~~~~~~--~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 125 (624)
T PRK12582 48 PRSIPHLLAKWAAEAPDRPWLAQREPG--HGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAA 125 (624)
T ss_pred ccCHHHHHHHHHHHCCCchheecccCC--CCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHH
Confidence 334567788889999999999975421 133568999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEecCCCCCH-----HHHHHHHHhcCceEEEEecceecCCccccchhhHHhhc---CCcEEEEcCCCCCccccc
Q 004815 256 VLAGYIVVSIADSFAS-----LEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ---APLAIVIPAKGSSFSMKL 327 (729)
Q Consensus 256 l~aGa~~vpldp~~~~-----~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 327 (729)
+++|++++|++|.++. +++.+++++++++++|+++... .......+ ....+.+.....
T Consensus 126 ~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~------ 191 (624)
T PRK12582 126 MQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP--------FARALAALDLLDVTVVHVTGPGE------ 191 (624)
T ss_pred HHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH--------HHHHHHhhhhcCceEEEEcCCCc------
Confidence 9999999999999885 8999999999999999986310 11111111 112233221110
Q ss_pred CCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCC---CCEEEEc
Q 004815 328 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRK---ADIVAWP 404 (729)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~---~d~~l~~ 404 (729)
......+.++...... ...........++++++|+|||||||.||||+++|++++.........+.... .++++..
T Consensus 192 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (624)
T PRK12582 192 GIASIAFADLAATPPT-AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDW 270 (624)
T ss_pred ccccccHHHHhhcCCc-chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEe
Confidence 0122345554432211 00001112346789999999999999999999999999887766655555444 5799999
Q ss_pred cCcchhhhH-HHHHHHhhcCceEEEeCCCCChh---hHHHHHHHcCCcEEEecHHHHHHHHhcCCCC----CCCCCCccE
Q 004815 405 TNLGWMMGP-WLVYASLLNGASIALYNGSPLGS---GFAKFVQDAKVTMLGVVPSIVRTWKSTNCID----GYDWSSIRC 476 (729)
Q Consensus 405 ~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~~~~---~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~----~~~l~sLr~ 476 (729)
+|++|.++. ..++.+|..|+++++.++..++. .+.+.++++++|++..+|++++.|++..... ..++++||.
T Consensus 271 lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~ 350 (624)
T PRK12582 271 MPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRL 350 (624)
T ss_pred chHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeE
Confidence 999999987 45678999999999976544443 4567788999999999999999887642211 234689999
Q ss_pred EEeecCCCCHhHHHHHHhcc----C-CCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCC
Q 004815 477 FGSTGEASNVDEYLWLMGRA----L-YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNV 551 (729)
Q Consensus 477 v~~gGe~l~~~~~~~~~~~~----~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~ 551 (729)
+++||+++++++.+++.+.+ + ++++++.||+||++.++..... .....+++|+|++|++++|+ |.|+
T Consensus 351 i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~-------~~G~ 422 (624)
T PRK12582 351 MAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW-DTERVGLIGLPLPGVELKLA-------PVGD 422 (624)
T ss_pred EEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccC-CCCCCCCCCcCCCCcEEEEc-------cCCC
Confidence 99999999999999887642 2 3679999999999865442222 22446789999999999985 4566
Q ss_pred CceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEE-e---cCceEEEEcccCCeeec-CceeechH
Q 004815 552 PGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFER-T---SGGYYRAHGRADDTMNL-GGIKVSSV 626 (729)
Q Consensus 552 ~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~-~---~dG~l~~~GR~d~~iki-~G~ri~~~ 626 (729)
+ |||+|.+..+..+ |+++++.+++.|..+ +||+|||+|++ | +||+++|+||+||+||+ +|++|+|.
T Consensus 423 ~--GEl~vrg~~v~~G-Y~~~p~~t~~~f~~d------gw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~ 493 (624)
T PRK12582 423 K--YEVRVKGPNVTPG-YHKDPELTAAAFDEE------GFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVG 493 (624)
T ss_pred c--eEEEEECCccccc-ccCCccchhhhcCcc------CCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechH
Confidence 5 9999965544332 467888888888532 39999999998 4 56999999999999996 79999999
Q ss_pred HHH--HHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecC---------CCCC---CCChHHHHHHHHHHH---HhhCC
Q 004815 627 EIE--RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD---------SNYT---PPDLNQLRMSFNSAV---QKKLN 689 (729)
Q Consensus 627 eIE--~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~---------~~~~---~~~~~~l~~~l~~~l---~~~L~ 689 (729)
+|| .++ ..||.|.+|+|++.+++. +.+.|++.. .+.. ..+.+++++.+++.| ++.+|
T Consensus 494 ~iE~e~~l-~~~p~V~~a~VvG~~~~~-----~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 567 (624)
T PRK12582 494 TLRPDAVA-ACSPVIHDAVVAGQDRAF-----IGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAG 567 (624)
T ss_pred HHHHHHHH-hcCcchheEEEEcCCCCc-----EEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcC
Confidence 885 566 489999999999986543 444443321 0100 012345555554444 44577
Q ss_pred CCC-ccceEEeCCCCCC------CCCChhhHHHHHHHHHh
Q 004815 690 PLF-KVSHVVPLPSLPR------TATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 690 ~~~-~P~~i~~v~~lP~------t~~GKidR~~L~~~~~~ 722 (729)
.+. +|.++++++++|+ |++||+.|++..+.+.+
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~ 607 (624)
T PRK12582 568 GSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAA 607 (624)
T ss_pred CChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHH
Confidence 777 9999999998875 56677888888777765
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=520.48 Aligned_cols=435 Identities=20% Similarity=0.226 Sum_probs=354.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecc
Q 004815 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 212 TY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred eecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCC
Q 004815 292 IIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGE 371 (729)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~ 371 (729)
... +.. ....+.++..... ...........+++++++|||||||.
T Consensus 81 ~~~--~~~------------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~ 125 (436)
T TIGR01923 81 LEE--KDF------------------------------QADSLDRIEAAGR---YETSLSASFNMDQIATLMFTSGTTGK 125 (436)
T ss_pred ccc--cce------------------------------eecchHhhhhccc---ccccccccCCcCceEEEEeCCCCCCC
Confidence 210 000 0001111111100 00111233457899999999999999
Q ss_pred CceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEE
Q 004815 372 PKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLG 451 (729)
Q Consensus 372 PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~ 451 (729)
||+|+++|+++...+.+....++++++|+++..+|+.|..++..++.++..|+++++.+.. ..+++.|+++++|++.
T Consensus 126 PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~~ 202 (436)
T TIGR01923 126 PKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHIS 202 (436)
T ss_pred CcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEEE
Confidence 9999999999999888888889999999999999999998888889999999999997643 3889999999999999
Q ss_pred ecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCC
Q 004815 452 VVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP 531 (729)
Q Consensus 452 ~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p 531 (729)
++|+++..|.+.... .+++|.+++||+++++++.+++.. . +.+++|.||+||++..++...........++|+|
T Consensus 203 ~~P~~l~~l~~~~~~----~~~l~~~~~~G~~~~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~ 276 (436)
T TIGR01923 203 LVPTQLNRLLDEGGH----NENLRKILLGGSAIPAPLIEEAQQ-Y-GLPIYLSYGMTETCSQVTTATPEMLHARPDVGRP 276 (436)
T ss_pred eHHHHHHHHHhCcCC----CCceEEEEECCCCCCHHHHHHHHH-h-CCceeeEecCCccchhccCcCccccccccCCCcc
Confidence 999999999876432 268999999999999999888764 3 5889999999999875554433222222358999
Q ss_pred CCCcEEEE-EcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEc
Q 004815 532 AMGCKLFI-LGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHG 610 (729)
Q Consensus 532 ~~~~~~~v-~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~G 610 (729)
+++++++| .|+.+ + .|||++.+.....+| +++++.+...+. ..||+|||+|++++||.+++.|
T Consensus 277 ~~~~~~~i~~~~~~------~--~Gel~v~~~~~~~gy-~~~~~~~~~~~~-------~~~~~TGD~~~~~~dg~~~~~G 340 (436)
T TIGR01923 277 LAGREIKIKVDNKE------G--HGEIMVKGANLMKGY-LYQGELTPAFEQ-------QGWFNTGDIGELDGEGFLYVLG 340 (436)
T ss_pred CCCcEEEEEeCCCC------C--ceEEEEECCccchhh-CCChhhhhhhhc-------CCCeeccceEEEcCCCCEEEec
Confidence 99999999 44332 3 399999665444333 334444443332 2399999999999999999999
Q ss_pred ccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCC
Q 004815 611 RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNP 690 (729)
Q Consensus 611 R~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~ 690 (729)
|.||+||++|.+|++.|||++|. .+|.|.+++|++.++...+ ..++++++... ..+..++.+ ++++.|++
T Consensus 341 R~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~----~~~~~~l~~----~l~~~l~~ 410 (436)
T TIGR01923 341 RRDDLIISGGENIYPEEIETVLY-QHPGIQEAVVVPKPDAEWG-QVPVAYIVSES----DISQAKLIA----YLTEKLAK 410 (436)
T ss_pred cccCeEEeCCEeeCHHHHHHHHH-hCCCeeEEEEeCCcchhcC-CeeEEEEEECC----CCCHHHHHH----HHHHhhhC
Confidence 99999999999999999999995 8999999999998876666 78889988776 245555555 57788999
Q ss_pred CCccceEEeCCCCCCCCCChhhHHHH
Q 004815 691 LFKVSHVVPLPSLPRTATNKVMRRVL 716 (729)
Q Consensus 691 ~~~P~~i~~v~~lP~t~~GKidR~~L 716 (729)
|++|..|+++++||+|++||++|++|
T Consensus 411 ~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 411 YKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred CCCCeEEEEecCCCCCCCCceecccC
Confidence 99999999999999999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=519.95 Aligned_cols=489 Identities=17% Similarity=0.173 Sum_probs=365.9
Q ss_pred hhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Q 004815 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (729)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa 260 (729)
+.|...+..+|+.+|+...+. .+.+||.||+++++++|++|.+.|+++||+|+|+++|++++++++|||+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~------~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~ 79 (545)
T PRK07768 6 EKMYANARTSPRGMVTGEPDA------PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGA 79 (545)
T ss_pred HHHHHHhhCCCcceEEecCCC------ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCc
Confidence 344566778899999976554 24899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHH-------HHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcC
Q 004815 261 IVVSIADSFASLEI-------SARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDIS 333 (729)
Q Consensus 261 ~~vpldp~~~~~~l-------~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 333 (729)
+++|+++..+.+++ .++++.++++.+++++......+ . ..... .....
T Consensus 80 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~-~~~~~------------------~~~~~ 134 (545)
T PRK07768 80 SLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAP------V-LEEKG------------------IRVLT 134 (545)
T ss_pred cccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhh------h-hcccC------------------Cceee
Confidence 99999998886654 45677789999999774321000 0 00000 01223
Q ss_pred HHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCC-CEEEEccCcchhhh
Q 004815 334 WLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKA-DIVAWPTNLGWMMG 412 (729)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~-d~~l~~~~~~~~~~ 412 (729)
++++..... .......++++++++|||||||+||||+++|+++...+......+++.++ |++++.+|++|+.+
T Consensus 135 ~~~l~~~~~------~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 208 (545)
T PRK07768 135 VADLLAADP------IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMG 208 (545)
T ss_pred hhhhcccCC------CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchH
Confidence 444433111 12234567999999999999999999999999999988887788888886 89999999999999
Q ss_pred HH-HHHHHhhcCceEEEeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcC----CCCCCCCCCccEEEeecCCC
Q 004815 413 PW-LVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN----CIDGYDWSSIRCFGSTGEAS 484 (729)
Q Consensus 413 ~~-~i~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~----~~~~~~l~sLr~v~~gGe~l 484 (729)
.. .++.++..|+++++.... .++..++++++++++|++..+|.++..+.... .....++++||.+++||+++
T Consensus 209 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~ 288 (545)
T PRK07768 209 MVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPI 288 (545)
T ss_pred HHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCC
Confidence 85 466789999999988642 25667889999999999988888877665421 11235688999999999999
Q ss_pred CHhHHHHHHhc---cC--CCCeeecccccccccccccCCccc-------------------------ccccccccCCCCC
Q 004815 485 NVDEYLWLMGR---AL--YKPVIEYCGGTEIGGGFITGSLLQ-------------------------AQSLAAFSTPAMG 534 (729)
Q Consensus 485 ~~~~~~~~~~~---~~--~~~l~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~~iG~p~~~ 534 (729)
++...+++.+. ++ ...+++.||+||++..++...... .....++|+|++|
T Consensus 289 ~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g 368 (545)
T PRK07768 289 DPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPG 368 (545)
T ss_pred CHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCC
Confidence 99998887653 22 235999999999986543322110 1134589999999
Q ss_pred cEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCC
Q 004815 535 CKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADD 614 (729)
Q Consensus 535 ~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~ 614 (729)
++++|+|++|++++.|+. |||++.+..+..+| + +...+.. ... +..||+|||+|++++||.++++||.||
T Consensus 369 ~~~~i~~~~~~~~~~g~~--Gel~v~~~~~~~gy-~-~~~~~~~----~~~--~~g~~~TGDl~~~~~~g~l~~~GR~~d 438 (545)
T PRK07768 369 LEVRVVDEDGQVLPPRGV--GVIELRGESVTPGY-L-TMDGFIP----AQD--ADGWLDTGDLGYLTEEGEVVVCGRVKD 438 (545)
T ss_pred CEEEEECCCCCCCCCCCE--EEEEEccCcccccc-c-CCCCCcc----ccc--CCCeeeccceEEEecCCEEEEEccccc
Confidence 999999999999999986 99999665443322 2 3222211 111 233999999999999999999999999
Q ss_pred eeecCceeechHHHHHHHhcCCCCeeeeEEEeecC--CCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCC
Q 004815 615 TMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP--PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 692 (729)
Q Consensus 615 ~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~--~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~ 692 (729)
+||++|.+|+|.|||++|. .||+|.+++|+++.. ...+ +.+++++.... ........++.+++++.+...+. .
T Consensus 439 ~i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~l~~~~~~~l~~~~~--~ 513 (545)
T PRK07768 439 VIIMAGRNIYPTDIERAAA-RVEGVRPGNAVAVRLDAGHSR-EGFAVAVESNA-FEDPAEVRRIRHQVAHEVVAEVG--V 513 (545)
T ss_pred eEEECCEecCHHHHHHHHH-hCcccccceEEEEEecCCCCc-eEEEEEEEecc-cccHHHHHHHHHHHHHHHHHHhC--C
Confidence 9999999999999999995 899999988877653 3333 45555554443 21011122344444444433332 5
Q ss_pred ccceEEeCC--CCCCCCCChhhHHHHHHHHH
Q 004815 693 KVSHVVPLP--SLPRTATNKVMRRVLRKQLA 721 (729)
Q Consensus 693 ~P~~i~~v~--~lP~t~~GKidR~~L~~~~~ 721 (729)
.|..+.+++ .||+|++||++|+.|+++|.
T Consensus 514 ~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 514 RPRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred CccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 677787776 89999999999999999874
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=496.85 Aligned_cols=506 Identities=19% Similarity=0.203 Sum_probs=373.7
Q ss_pred cCCCCcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Q 004815 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSV 249 (729)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~v 249 (729)
|..-...+.....+.++++.+|+.+|+.+... +.++.+||+|+.+++.++|++|++.|+..||+|+|++.|+++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~ 84 (613)
T COG1022 9 WEDVAEIHTLPKRLAERVKDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWA 84 (613)
T ss_pred chhhhhcccHHHHHHHHhhcCCcceeEeeecC----CcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHH
Confidence 43333444455667778889999999987765 57789999999999999999999999977999999999999999
Q ss_pred HHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC---cEEEEc---CCCCCc
Q 004815 250 VIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP---LAIVIP---AKGSSF 323 (729)
Q Consensus 250 v~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~---~~~~~~ 323 (729)
++.+||+.+|++.||+.++.+++.++++|++++++++|++.... ......+....+. ....+. ......
T Consensus 85 i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (613)
T COG1022 85 IADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQEL-----LDLVLPVLEDCPKVVDLIVIIDLVREAVEAK 159 (613)
T ss_pred HHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHH-----HHHHHhhhccccchhhhhhhhhhhhhccchh
Confidence 99999999999999999999999999999999999999998421 1222222221111 000000 000000
Q ss_pred cccc----CCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCC-CCCC
Q 004815 324 SMKL----RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD-IRKA 398 (729)
Q Consensus 324 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~ 398 (729)
.... ..+...+ .+.. ........+..++|+|.|+|||||||+|||||+||+|++..+......++ ++++
T Consensus 160 ~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~ 233 (613)
T COG1022 160 ALVLEVFPDEGISLF-LIDS-----AGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPG 233 (613)
T ss_pred hccccccccccchhh-hhcc-----cccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCC
Confidence 0000 0001111 0100 01111224567999999999999999999999999999999999999997 9999
Q ss_pred CEEEEccCcchhhhHHH-HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhc--------CCCC--
Q 004815 399 DIVAWPTNLGWMMGPWL-VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKST--------NCID-- 467 (729)
Q Consensus 399 d~~l~~~~~~~~~~~~~-i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~--------~~~~-- 467 (729)
|++++++|++|.+.... ....+..|+++... .++..+++.+.+.++|++..+|.+|+.+.+. ....
T Consensus 234 d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~---~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~ 310 (613)
T COG1022 234 DRVLSFLPLAHIFERAFEGGLALYGGVTVLFK---EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRK 310 (613)
T ss_pred cEEEEeCcHHHHHHHHHHHHHHhhcceEEEec---CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHH
Confidence 99999999999998854 54555555555443 4678899999999999999999999887442 0000
Q ss_pred -------------------------------------CCCC-CCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccc
Q 004815 468 -------------------------------------GYDW-SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTE 509 (729)
Q Consensus 468 -------------------------------------~~~l-~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE 509 (729)
...+ .++|.+++||.++++++..+++.. ++++.+.||+||
T Consensus 311 if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTE 388 (613)
T COG1022 311 LFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTE 388 (613)
T ss_pred HHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccc
Confidence 0001 368999999999999999988764 489999999999
Q ss_pred cccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeec-cccCCCcccccccccccccccccCCCC
Q 004815 510 IGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSP-LIFGASSTLLNANHYDVYFSGMPSRNG 588 (729)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~-~~~~~~~~~~~~~~~~~~f~~~p~~~g 588 (729)
++...+.+.+ .....+++|.|+|+++++|.|+ |||+|.+ ..+.+ ||++|+.|++.|..+.
T Consensus 389 ts~~~~v~~~-~~~~~gtvG~p~p~~evKI~d~------------GEilVRG~~Vm~G--Yyk~pe~Taeaf~~DG---- 449 (613)
T COG1022 389 TSAVVSVNPP-DRFVLGTVGKPLPGIEVKIADD------------GEILVRGPNVMKG--YYKNPEATAEAFTEDG---- 449 (613)
T ss_pred cccceEEccc-cCcccCCcCCcCCCceEEEccC------------ceEEEecchhcch--hcCChHHHhhhccccC----
Confidence 9987666554 3356789999999999999994 9999955 45443 5789999999998643
Q ss_pred ceeEEeCceEEEecCceEEEEcccCCeeec-CceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCC
Q 004815 589 QILRRHGDVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSN 667 (729)
Q Consensus 589 ~~~y~TGDl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~ 667 (729)
||+|||+|.+|++|+|.++||+++.||. +|++|.|..||+.+ +.+|-|.+++|++ .+ ...++|.+++..+.
T Consensus 450 --Wf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l-~~~~~I~qi~vvg-~~----k~~~~AlIvp~~~~ 521 (613)
T COG1022 450 --WFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKL-AKSPLIEQICVVG-DD----KKFLVALIVPDFDA 521 (613)
T ss_pred --CcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHH-hcCCCeeEEEEEe-cC----CcceEEEEeCCHHH
Confidence 9999999999999999999999999997 89999999999999 5999999999998 22 25799999976510
Q ss_pred C----------CCCChHH------HHHHHHHHH---HhhCCCCCccceEEeCC-CCC-----CCCCChhhHHHHHHHHHh
Q 004815 668 Y----------TPPDLNQ------LRMSFNSAV---QKKLNPLFKVSHVVPLP-SLP-----RTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 668 ~----------~~~~~~~------l~~~l~~~l---~~~L~~~~~P~~i~~v~-~lP-----~t~~GKidR~~L~~~~~~ 722 (729)
. ...+..+ +++.+...+ ...+..+-.+..++.+. ++. +|+.=|+.|+.+.+.+..
T Consensus 522 l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~ 601 (613)
T COG1022 522 LEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKD 601 (613)
T ss_pred HHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhh
Confidence 0 0011111 222222222 22233344444555443 333 688889999988877654
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-54 Score=463.11 Aligned_cols=520 Identities=17% Similarity=0.149 Sum_probs=392.4
Q ss_pred chHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Q 004815 176 VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAI 255 (729)
Q Consensus 176 ~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~ 255 (729)
..++++.|.+.+...|+.+++-+.......++++.+||.|..+++..+|..|+++|+++++.|||+..|++||++++.||
T Consensus 74 ~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~ 153 (691)
T KOG1256|consen 74 PLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMAC 153 (691)
T ss_pred cccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHH
Confidence 34567889989999999999988764323578899999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhh--cCCcEEEEcCCCCCcc-cccCCC--
Q 004815 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA--QAPLAIVIPAKGSSFS-MKLRDG-- 330 (729)
Q Consensus 256 l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~~~~-- 330 (729)
...|++.|||...++++.+.++++++.++++|+++. +....+.+..+. ++....++.-...... .....+
T Consensus 154 ~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~-----~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~g 228 (691)
T KOG1256|consen 154 YAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNA-----KKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNG 228 (691)
T ss_pred HhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCH-----HHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCC
Confidence 999999999999999999999999999999999964 122222222222 3333333222221111 111112
Q ss_pred --CcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHH---Hhh---CCCCCCCEEE
Q 004815 331 --DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA---WCH---MDIRKADIVA 402 (729)
Q Consensus 331 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~---~~~~~~d~~l 402 (729)
..+|+++...+..... ... .+..|+++|-|+|||||||.|||||+||+|++..+... ... ......|+++
T Consensus 229 v~v~S~~e~~~lG~~~~~-~~~-~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~l 306 (691)
T KOG1256|consen 229 VEVYSWDEFEELGKKNQR-KPR-VPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYL 306 (691)
T ss_pred eEEEEHHHHHhhcccccC-CCC-CCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEE
Confidence 4689999988763211 112 57789999999999999999999999999998855431 111 1223469999
Q ss_pred EccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcC------------------
Q 004815 403 WPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN------------------ 464 (729)
Q Consensus 403 ~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~------------------ 464 (729)
+++|++|.+-...-...+..|+++.++.+ |+..+.+.|++.++|++.++|.+|..+.+.-
T Consensus 307 SyLPLAHi~er~~~~~~~~~G~~IgF~~g--D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A 384 (691)
T KOG1256|consen 307 SYLPLAHIFERVVELYTFYIGAKIGFARG--DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFA 384 (691)
T ss_pred EeCcHHHHHHHHHHHhHhhcccEEEEecC--ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999998655566699999999874 5667888899999999999999998874420
Q ss_pred --------CCCCCCC-------------------CCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccC
Q 004815 465 --------CIDGYDW-------------------SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITG 517 (729)
Q Consensus 465 --------~~~~~~l-------------------~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 517 (729)
...+... ..+|.+++|+.++++++...++..++ +++++.||.|||++.++..
T Consensus 385 ~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g-~~v~eGYGlTEts~g~~~~ 463 (691)
T KOG1256|consen 385 MAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG-CRVLEGYGLTETSAGTTLT 463 (691)
T ss_pred HHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC-ceeeecccccccCCceEec
Confidence 0000000 35789999999999999999887664 8999999999999665555
Q ss_pred CcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEe-eccccCCCcccccccccccccccccCCCCceeEEeC
Q 004815 518 SLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELAL-SPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG 595 (729)
Q Consensus 518 ~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v-~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TG 595 (729)
.+... ..+++|.|+|+++++++| ++.+.-+.|.. ||||| ++..+.+ ||++|+.|++.|..+. |++||
T Consensus 464 ~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~--GEIcirG~~Vf~G--YyK~p~~T~e~ideDG------WLhTG 532 (691)
T KOG1256|consen 464 LPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADGSK--GEICVRGPNVFMG--YYKDPEKTAEAIDEDG------WLHTG 532 (691)
T ss_pred cCCCC-CCCCcCCcccCceEEEechHHhCcCcCCCc--ceEEEecchhcee--ccCChHHHhhhhcccc------ccccc
Confidence 55443 789999999999999998 45555555654 99999 4555554 5789999999997543 99999
Q ss_pred ceEEEecCceEEEEcccCCeeec-CceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCC----
Q 004815 596 DVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP---- 670 (729)
Q Consensus 596 Dl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~---- 670 (729)
|+|+|+++|.|.++||.++.+|. .|+.|.|..||++.. ..+-|.+.+|.+-.. ...|+|.|+++. ....
T Consensus 533 DiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~-~~~~V~qi~V~g~s~----~~~LvaiVvpd~-e~~~~~a~ 606 (691)
T KOG1256|consen 533 DIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYK-RSLPVQQIFVLGDSL----RSFLVAIVVPDP-EVLKSWAA 606 (691)
T ss_pred cceeECCCccEEEEecccceEEcCCCCccChHHHHHHHh-cCCceEEEEEECCcc----hhcEEEEEecCh-hhchhhHH
Confidence 99999999999999999999998 899999999999985 778899988887432 257999999865 2100
Q ss_pred -----CChHH------HHHHHHHHH-----HhhCCCCCccceEEeC------CCCCCCCCChhhHHHHHHHHHh
Q 004815 671 -----PDLNQ------LRMSFNSAV-----QKKLNPLFKVSHVVPL------PSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 671 -----~~~~~------l~~~l~~~l-----~~~L~~~~~P~~i~~v------~~lP~t~~GKidR~~L~~~~~~ 722 (729)
.+.++ +++.+...+ ...|..+.....|... +.==+||+=|+.|..|.+.+..
T Consensus 607 ~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~ 680 (691)
T KOG1256|consen 607 KDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKK 680 (691)
T ss_pred HccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHH
Confidence 01111 111111111 2335555555666653 2334788999999999998875
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=477.88 Aligned_cols=399 Identities=25% Similarity=0.275 Sum_probs=311.4
Q ss_pred hccccCCCCCCeEEEE-eecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCE
Q 004815 183 LSVNSKRSLDDIVIRW-CDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYI 261 (729)
Q Consensus 183 l~~~~~~~pd~~Al~~-~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~ 261 (729)
|+++++++||++|+++ ... ++||+||+++++++|..|+++|+++||+|+|+++|+++++++++||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~~~~~--------~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGR--------SLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTE--------EEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEECCCE--------EEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 4678889999999999 544 9999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhc---CC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004815 262 VVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ---AP--LAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 262 ~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
++|++|.++.+++.++++.+++++||+ .+.. +... ...+.... .. ....+.... ......
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~-~~~~---d~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 137 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIIT-SEAV---DSEP-LKKLKSIFKQEDPSSSIIILDRDD----------LPKKEA 137 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEE-CHHH---SCHH-HHHHHHHHTTSTTTEEEEEESHSS----------CTTCHH
T ss_pred ccccccccccccccccccccceeEEEE-eccc---cccc-cccchhhhcccccccccccccccc----------cccccc
Confidence 999999999999999999999999998 1000 0111 22222221 11 122232111 111111
Q ss_pred HHHHhhccccCcccccc-CCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHH--hhCCCCCCCEEEEccCcchhhhH
Q 004815 337 FLERVRKLKENEFAAVE-QPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW--CHMDIRKADIVAWPTNLGWMMGP 413 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~-~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~ 413 (729)
+...... . ... .. ..++++++++|||||||.||+|+++|+++++.+.... ..++++ |++++.+|++|.+++
T Consensus 138 ~~~~~~~-~--~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~ 211 (417)
T PF00501_consen 138 LKSASLS-D--EPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGL 211 (417)
T ss_dssp HHHHHHC-H--CSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHH
T ss_pred ccccccc-c--ccc-cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccc
Confidence 1111110 0 000 00 0579999999999999999999999999998877754 233444 699999999999999
Q ss_pred -HHHHHHhhcCceEEEeCCCCC--hhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC----CCCCCCCccEEEeecCCCCH
Q 004815 414 -WLVYASLLNGASIALYNGSPL--GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI----DGYDWSSIRCFGSTGEASNV 486 (729)
Q Consensus 414 -~~i~~~L~~G~~lvl~~~~~~--~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~----~~~~l~sLr~v~~gGe~l~~ 486 (729)
..++.++..|+++++++.... +..+++.|+++++|++.++|++++.|++.... ...++++||.+++||+++++
T Consensus 212 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~ 291 (417)
T PF00501_consen 212 ISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPP 291 (417)
T ss_dssp HHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CH
T ss_pred cccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCCh
Confidence 889999999999999986533 46688999999999999999999999874222 13468899999999999999
Q ss_pred hHHHHHHhccCCCCeeecccccccccccccCC-cccccccccccCCCCCcEEEEEcCC-CCccCCCCCceeEEEeecccc
Q 004815 487 DEYLWLMGRALYKPVIEYCGGTEIGGGFITGS-LLQAQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIF 564 (729)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~-~~~~~~~~~iG~p~~~~~~~v~d~~-g~~~p~g~~giGel~v~~~~~ 564 (729)
+..+++++.++..++++.||+||++..++... ........++|.|++|++++|+|++ +++++.|+. |||+|.+..+
T Consensus 292 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~--Gei~i~~~~~ 369 (417)
T PF00501_consen 292 DLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEP--GEIVIRGPNV 369 (417)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSE--EEEEEESTTS
T ss_pred hhccccccccccccceecccccccceeeeccccccccccccccccccccccccccccccccccccccc--ccccccCCcc
Confidence 99999998887568999999999998765432 2222355789999999999999988 999999997 9999976654
Q ss_pred CCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecC
Q 004815 565 GASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLG 619 (729)
Q Consensus 565 ~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~ 619 (729)
..+ |+++++.+++.|.. ++||+|||+|++|+||+|+++||.||+||+|
T Consensus 370 ~~g-y~~~~~~~~~~~~~------~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 370 FSG-YYNDPELTAEAFID------DGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp BSE-ETTBHHHHHHHEET------TSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred cee-eecccccccccccc------ccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 433 34566778777774 2299999999999999999999999999986
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=433.38 Aligned_cols=508 Identities=18% Similarity=0.169 Sum_probs=395.3
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|..+++++|+++|+++.+.. +++||+|+++.++++|+.|..+|++.||.||++|+|.++++...||.+|
T Consensus 78 ti~~~F~~~vrr~p~k~aii~~~~~------~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaK 151 (649)
T KOG1179|consen 78 TIAELFLSQVRRQPDKPAIIYEGPF------QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAK 151 (649)
T ss_pred cHHHHHHHHHHhCCCccEEEEeCCC------ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHh
Confidence 4457788899999999999998852 2999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
+|++...||++...+-+.+-+.-++++.+|++.+... ...++.+.+.. .+.++..... ......++
T Consensus 152 lGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~------~~~e~~~~l~~~~i~~~~~~~~-------~~~~g~~~ 218 (649)
T KOG1179|consen 152 LGVITAFINTNLRGEPLLHSITVSGARALVVGPELLN------ALEEILPLLIKNGIHVFSLGPT-------SVPDGIES 218 (649)
T ss_pred hCceeeeeccccccchhhhhhhhcCceEEEECHHHHH------HHHhcchhhhhccceEEecCCC-------CCCchHHH
Confidence 9999999999999999999999999999999986431 12222122211 1222222111 11223445
Q ss_pred HHHHhhccccCc---cccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH
Q 004815 337 FLERVRKLKENE---FAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP 413 (729)
Q Consensus 337 ~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 413 (729)
+....+.....+ .........++++.||||||||.||..+++|.-...........++++++|+++..+|+.|.++.
T Consensus 219 L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ 298 (649)
T KOG1179|consen 219 LLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAG 298 (649)
T ss_pred HHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHH
Confidence 544433211111 22334556789999999999999999999999888877767788999999999999999999987
Q ss_pred -HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHH
Q 004815 414 -WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWL 492 (729)
Q Consensus 414 -~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~ 492 (729)
..+.++|..|+|+||-. .+....+|+-+.+|++|+..-.--+++.|+..+......-..+|..+ |..+.++.|+.|
T Consensus 299 ilGi~~~l~~GaT~Vlrk-KFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~--GNGLR~diW~~F 375 (649)
T KOG1179|consen 299 ILGIGGCLLHGATVVLRK-KFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAY--GNGLRPDIWQQF 375 (649)
T ss_pred HHHHHHHHhcCceEEEec-ccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEe--cCCCCchHHHHH
Confidence 78999999999999965 47788999999999999999999999999998876665567788665 566889999999
Q ss_pred HhccCCCCeeecccccccccccccCCcccccccccccCC------CCCcEEEE---------EcCCCC--ccCCCCCcee
Q 004815 493 MGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP------AMGCKLFI---------LGNDGC--PIPQNVPGMG 555 (729)
Q Consensus 493 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~v---------~d~~g~--~~p~g~~giG 555 (729)
.++|+..++.+.||+||..+..+.. ....+.+|+- +--+++-= -|++|- +|++|++ |
T Consensus 376 v~RFg~~~IgE~YgaTEgn~~~~N~----d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEp--G 449 (649)
T KOG1179|consen 376 VKRFGIIKIGEFYGATEGNSNLVNY----DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEP--G 449 (649)
T ss_pred HHHcCCCeEEEEeccccCcceeeee----cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCC--c
Confidence 9999978899999999987643322 1222333321 11112222 233332 6789998 6
Q ss_pred EEEe---eccc-cCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHH
Q 004815 556 ELAL---SPLI-FGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERI 631 (729)
Q Consensus 556 el~v---~~~~-~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~ 631 (729)
.++- .... .....|.++.+.++.+..+|-+..|+.||.|||+-.+|..|++||.+|..|...-.|++|+..|||.+
T Consensus 450 lLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~ 529 (649)
T KOG1179|consen 450 LLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDV 529 (649)
T ss_pred eEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHH
Confidence 5542 1122 11111333477888889999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChh
Q 004815 632 CNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKV 711 (729)
Q Consensus 632 L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi 711 (729)
| ....++.||.|+|+.-+......=.|.++.++ .. ..+.+.+- +++++.||+|.+|..+.++++|++|.+=|.
T Consensus 530 l-~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p-~~-~~d~~~l~----~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl 602 (649)
T KOG1179|consen 530 L-SALDFLQDVNVYGVTVPGYEGRAGMAAIVLDP-TT-EKDLEKLY----QHLRENLPSYARPRFLRLQDEIEKTGTFKL 602 (649)
T ss_pred H-hhhccccceeEEEEecCCccCccceEEEEecC-cc-cchHHHHH----HHHHhhCccccchHHHHHHhhhhcccchhh
Confidence 9 58899999999998776553245566666665 43 45544444 478999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 004815 712 MRRVLRKQL 720 (729)
Q Consensus 712 dR~~L~~~~ 720 (729)
.+..|.+.-
T Consensus 603 ~K~~L~~eg 611 (649)
T KOG1179|consen 603 QKTELQKEG 611 (649)
T ss_pred HHHHHHHcc
Confidence 999998763
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-52 Score=454.88 Aligned_cols=399 Identities=21% Similarity=0.223 Sum_probs=329.9
Q ss_pred cHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEec
Q 004815 212 TLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQD 290 (729)
Q Consensus 212 TY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~ 290 (729)
||.||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++++
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 899999999999999998 8999999999999999999999999999999999999999999999999999999999987
Q ss_pred ceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCC
Q 004815 291 LIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTG 370 (729)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG 370 (729)
......+.. ......+.. .+....... ...........++++++++|||||||
T Consensus 81 ~~~~~~~~~----------~~~~~~~~~--------------~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~TSGTtG 133 (408)
T TIGR01733 81 ALASRLAGL----------VLPIILVDP--------------LELAALDDA---PAPPPPDAPSGPDDLAYVIYTSGSTG 133 (408)
T ss_pred chhhhcccc----------CCceEEech--------------hhhhhcccc---cccccccCCCCCCCcEEEEEcCCCCC
Confidence 543211111 001111110 000000000 00011111145789999999999999
Q ss_pred CCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCC--hhhHHHHHHHcCCc
Q 004815 371 EPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPL--GSGFAKFVQDAKVT 448 (729)
Q Consensus 371 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~--~~~l~~~i~~~~vt 448 (729)
.||+|.++|+++.+.+......+++.++|+++...|+.|.++++.++.++..|++++++++... +..+.+.++++++|
T Consensus 134 ~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t 213 (408)
T TIGR01733 134 RPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVT 213 (408)
T ss_pred CCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCce
Confidence 9999999999999999888888999999999999999999999999999999999999876554 67788999999999
Q ss_pred EEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCccc--cc--c
Q 004815 449 MLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ--AQ--S 524 (729)
Q Consensus 449 ~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~--~~--~ 524 (729)
.+.++|.+++.|.+... ..+++||.+++||+++++++.+++.++++++.+++.||+||++..+....... .. .
T Consensus 214 ~l~~~p~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~ 290 (408)
T TIGR01733 214 VLNLTPSLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRES 290 (408)
T ss_pred EEEeCHHHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCcc
Confidence 99999999999988653 45789999999999999999999998887789999999999987654222211 11 2
Q ss_pred cccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCC--CceeEEeCceEEEec
Q 004815 525 LAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRN--GQILRRHGDVFERTS 602 (729)
Q Consensus 525 ~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~--g~~~y~TGDl~~~~~ 602 (729)
..++|.|+++++++|+|+++++++.|+. |||+|.+..+..+ |+++++.+...|..+++.. |.+||+|||+|++++
T Consensus 291 ~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~~~~~~~g-y~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~ 367 (408)
T TIGR01733 291 PVPIGRPLANTRLYVLDDDLRPVPVGVV--GELYIGGPGVARG-YLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLP 367 (408)
T ss_pred ccccCcccCCceEEEECCCCCCCCCCCc--eEEEecCcccccc-ccCChhhhhcceeeCCCCCCCCceEEECCceEEEcC
Confidence 6789999999999999999999999986 9999965443332 3567888888888776533 446999999999999
Q ss_pred CceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEE
Q 004815 603 GGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAA 644 (729)
Q Consensus 603 dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~V 644 (729)
||++++.||.||+|+++|++|+|.|||++|. .||.|.+|+|
T Consensus 368 ~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~-~~~~v~~~~v 408 (408)
T TIGR01733 368 DGNLEFLGRIDDQVKIRGYRIELGEIEAALL-RHPGVREAVV 408 (408)
T ss_pred CCCEEEeeccCCEEEeCeEEechHHHHHHHh-cCcchhhhcC
Confidence 9999999999999999999999999999995 9999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-51 Score=418.22 Aligned_cols=495 Identities=17% Similarity=0.164 Sum_probs=371.1
Q ss_pred CceeecHHHHHHHHHHHHHHHHHcCCCCCCE-EEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceE
Q 004815 207 PVKSMTLKELRAEVWLVAYALNALGLDKGSA-IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKA 285 (729)
Q Consensus 207 ~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~-Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~ 285 (729)
+..-+||.|+.+++.++|+.|.+.|++++++ ++|+++.+.+|+++++||++.+...|.+...+..+.+.+-|.+++++.
T Consensus 86 ~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~ 165 (678)
T KOG1180|consen 86 DYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTA 165 (678)
T ss_pred ceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceE
Confidence 4568999999999999999999999998777 999999999999999999999999999999999999999999999999
Q ss_pred EEEecceecCCccccchhhHHhhcCCcEEEEcCC--CCCcc---cc--c--CCCCcCHHHHHHHhhccccCccccccCCC
Q 004815 286 IFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAK--GSSFS---MK--L--RDGDISWLDFLERVRKLKENEFAAVEQPV 356 (729)
Q Consensus 286 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~---~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (729)
+||+.+.. +.+....+.+.....+|... +.... +. . .-...++++++..+.... .++.+..|
T Consensus 166 i~T~~~LL------~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~---~~~~~P~p 236 (678)
T KOG1180|consen 166 IFTDSELL------PKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE---IPPHPPKP 236 (678)
T ss_pred EEeCHHHH------HHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC---CCCCCCCC
Confidence 99998643 32233333344333333222 11111 11 1 112457888887765421 34445578
Q ss_pred CCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhC-CCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCC--
Q 004815 357 EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSP-- 433 (729)
Q Consensus 357 ~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~-- 433 (729)
+|+|+|||||||||.|||||++|.|+++.+....... .+++.|+++.++|+.|.+-+..=+.++.-|+++=-.+...
T Consensus 237 ~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLt 316 (678)
T KOG1180|consen 237 SDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLT 316 (678)
T ss_pred CceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceec
Confidence 9999999999999999999999999999888776655 7899999999999999999854457888888765432111
Q ss_pred Ch-----hhHHHHHHHcCCcEEEecHHHHHHHHhcCC-------------------------C-CCC-------------
Q 004815 434 LG-----SGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-------------------------I-DGY------------- 469 (729)
Q Consensus 434 ~~-----~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~-------------------------~-~~~------------- 469 (729)
|. ...-.-+...++|++..+|+.+.++.+.-. . ...
T Consensus 317 dts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKI 396 (678)
T KOG1180|consen 317 DTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKI 396 (678)
T ss_pred ccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHH
Confidence 11 112234678899999999999987754200 0 000
Q ss_pred ---CCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCC
Q 004815 470 ---DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGC 545 (729)
Q Consensus 470 ---~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~ 545 (729)
.=-.||.+++||.+|+++..+.+.-.++ +|+...||.||+++..+...+.. ...+.+|.|++.++++++| ++|.
T Consensus 397 r~~lGG~lR~~LsGGapLS~dtQrF~nic~C-~Pv~qGYGLTEtca~~tv~e~~d-~~~g~vG~pl~c~eiKLvdw~EgG 474 (678)
T KOG1180|consen 397 RALLGGNLRYILSGGAPLSPDTQRFMNICFC-CPVLQGYGLTETCAAATVLEPED-FSTGRVGAPLPCCEIKLVDWEEGG 474 (678)
T ss_pred HHHhCCceEEEEeCCCCCCHHHHHHHHHhcc-ccccccccccchhcccEecChhh-cccccccCCccceEEEEEEhhhcC
Confidence 0025899999999999999877665443 79999999999998655554433 3456899999999999999 5555
Q ss_pred ccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeec-Cceeec
Q 004815 546 PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNL-GGIKVS 624 (729)
Q Consensus 546 ~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki-~G~ri~ 624 (729)
--+.+.|--|||+|++.-+..+ ||+|++.|++.|.. .+|.|||+|||+|+|.+||.|.+++|++|.||. +|+.|.
T Consensus 475 Y~~~~~PPrGEI~i~G~~vt~g-Y~kn~ekT~e~ft~---~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIs 550 (678)
T KOG1180|consen 475 YFAKNKPPRGEILIGGPNVTMG-YYKNEEKTKEDFTV---EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYIS 550 (678)
T ss_pred ccCCCCCCCceEEecCCccChh-hhCChhhhhhhcee---cCCcEEEeccccceecCCCcEEEeechhhhhhhcccceee
Confidence 4444332239999977666543 47899999999986 468999999999999999999999999999997 899999
Q ss_pred hHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCC---------CCCCCChHH------H----HHHHHH-HH
Q 004815 625 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS---------NYTPPDLNQ------L----RMSFNS-AV 684 (729)
Q Consensus 625 ~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~---------~~~~~~~~~------l----~~~l~~-~l 684 (729)
++-||+++ +..|-|...+|.+ |... ..++++||+... |....+.++ + .+.|.+ .-
T Consensus 551 L~KvEa~l-~s~p~V~NICvyA--d~~~--s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak 625 (678)
T KOG1180|consen 551 LGKVEAAL-RSSPYVDNICVYA--DSNK--SKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAK 625 (678)
T ss_pred hHHHHHHH-hcCcchhheEEec--cccc--ceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999 5999999988887 3333 579999998751 110001111 1 222222 22
Q ss_pred HhhCCCCCccceEEeCCCCCCCC-------CChhhHHHHHHHHHh
Q 004815 685 QKKLNPLFKVSHVVPLPSLPRTA-------TNKVMRRVLRKQLAQ 722 (729)
Q Consensus 685 ~~~L~~~~~P~~i~~v~~lP~t~-------~GKidR~~L~~~~~~ 722 (729)
.++|...-+|..|++.++ |-|| .-|+.|+.+...+..
T Consensus 626 ~~~L~~iEip~~I~l~~e-~WTPenGlvT~A~KLKRk~I~~~~k~ 669 (678)
T KOG1180|consen 626 SQKLERIEIPAKIVLSPE-PWTPENGLVTAALKLKRKEILAAYKK 669 (678)
T ss_pred hcccccccccceeEecCC-CcCCCccccHHHHHhhHHHHHHHHHH
Confidence 567888999999887754 4443 449999999888775
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=404.75 Aligned_cols=323 Identities=20% Similarity=0.217 Sum_probs=263.4
Q ss_pred cCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEe--C
Q 004815 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY--N 430 (729)
Q Consensus 353 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~--~ 430 (729)
...+++++|++|||||||.||||+++|+++.+........+ ...++++...|+.|..++..++.+++.|++++++ .
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~ 108 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVS 108 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcC
Confidence 34568999999999999999999999999988777655443 3567888899999999998888999999999884 3
Q ss_pred CCCChhhHHHHHHHcC--CcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeeccccc
Q 004815 431 GSPLGSGFAKFVQDAK--VTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGT 508 (729)
Q Consensus 431 ~~~~~~~l~~~i~~~~--vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~T 508 (729)
...++..+++.+++++ +++...+|..+..++.... ...+++++|.+++||++++++..+++.+ . ++++++.||+|
T Consensus 109 ~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~-~-~~~v~~~YG~T 185 (358)
T PRK07824 109 AGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAA-A-GINVVRTYGMS 185 (358)
T ss_pred CCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHh-c-CCcEEecccCC
Confidence 4457888999999998 5667778988887766432 2345789999999999999999988765 3 58999999999
Q ss_pred ccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCC
Q 004815 509 EIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNG 588 (729)
Q Consensus 509 E~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g 588 (729)
|++..+. ..|.|++|+++++.| |||++.+..+..+| +++++.+ .|.. +|
T Consensus 186 E~~~~~~-----------~~G~~~~g~~v~i~~-------------Gei~v~g~~~~~gY-~~~~~~~--~~~~----~g 234 (358)
T PRK07824 186 ETSGGCV-----------YDGVPLDGVRVRVED-------------GRIALGGPTLAKGY-RNPVDPD--PFAE----PG 234 (358)
T ss_pred ccCCCcC-----------cCceeCCCCEEEecC-------------CEEEEecCcccccc-CCCcccc--cccC----CC
Confidence 9875431 358999999999843 88988655443332 3333321 2221 23
Q ss_pred ceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCC
Q 004815 589 QILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNY 668 (729)
Q Consensus 589 ~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~ 668 (729)
||+|||+|++ .||+++++||.||+||++|++|+|.|||++|. .||+|.+|+|++.+++..| +.++++++.+. +.
T Consensus 235 --~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~vv~~~~~~~g-~~~~a~v~~~~-~~ 308 (358)
T PRK07824 235 --WFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALA-THPAVADCAVFGLPDDRLG-QRVVAAVVGDG-GP 308 (358)
T ss_pred --ceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEecCCCCCc-eEEEEEEEeCC-CC
Confidence 9999999999 89999999999999999999999999999995 9999999999999988877 88999998765 33
Q ss_pred CCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 669 TPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 669 ~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
..+.+++++ ++++.|+.|++|..|+++++||+|++||+||++|++++.+
T Consensus 309 -~~~~~~i~~----~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 309 -APTLEALRA----HVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred -CcCHHHHHH----HHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 345455544 6788899999999999999999999999999999998854
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=422.80 Aligned_cols=489 Identities=13% Similarity=0.049 Sum_probs=344.2
Q ss_pred CCcCCCCcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Q 004815 168 GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (729)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (729)
.+|+.-.......++|.+.++++|+++|+.+... .++++.+||+|+.++++++|.+|+++|+++||+|+|+++|+++
T Consensus 418 ~~~~~~~~~~Tl~dll~~~a~~~pd~~al~~~~~---~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~E 494 (1452)
T PTZ00297 418 REYNPLAGVRSLGEMWERSVTRHSTFRCLGQTSE---SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRN 494 (1452)
T ss_pred hcCCCcccCCCHHHHHHHHHHHCCCCeEEEEecc---CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence 4565555555667788888999999999974311 1234589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCc--cc
Q 004815 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSF--SM 325 (729)
Q Consensus 248 ~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~ 325 (729)
|+++.+||+++|+++||+++ +.+++.+++++++++++|++.... ..+..+....-..++++....... ..
T Consensus 495 wvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l------~kl~~i~~~~Lr~IIv~d~~~~~~~~~~ 566 (1452)
T PTZ00297 495 IVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSV------AAILTCRSRKLETVVYTHSFYDEDDHAV 566 (1452)
T ss_pred HHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHH------HHHHhhcccCCcEEEEECCCcccccccc
Confidence 99999999999999999975 467899999999999999986432 111111111122344443210000 00
Q ss_pred ccC--CCCcCHHHHHHHhhccccCccccccCCCCCeeEEEe---ccCCCCCCceEEeCCchHHHHHHHHHhhC---CCCC
Q 004815 326 KLR--DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF---SSGTTGEPKAIPWTNATPFKAAADAWCHM---DIRK 397 (729)
Q Consensus 326 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~---TSGSTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~ 397 (729)
... ....+|++++..+... . ........+++++.|+| ||||||.||||++||+|++..+....... ...+
T Consensus 567 ~~~~~i~~~s~~~ll~~G~~~-~-~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~ 644 (1452)
T PTZ00297 567 ARDLNITLIPYEFVEQKGRLC-P-VPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFK 644 (1452)
T ss_pred cccCCcceeeHHHHHhcCccc-C-ccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCC
Confidence 000 1235688887754311 1 11223347889999996 99999999999999999998887765432 4568
Q ss_pred CCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcC----CC-------
Q 004815 398 ADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN----CI------- 466 (729)
Q Consensus 398 ~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~----~~------- 466 (729)
+|+++.++|++|.++....+.++..|+++.. .++..+++.|+++++|++.++|.+++.+.+.. ..
T Consensus 645 ~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~----~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~ 720 (1452)
T PTZ00297 645 KHLMVHFTPFAMLFNRVFVLGLFAHGSAVAT----VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSW 720 (1452)
T ss_pred CCEEEEechHHHHHHHHHHHHHHHcCCEEEe----CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 8999999999999987666788999999864 35788999999999999999999998775421 00
Q ss_pred ---------------CCCC---------------C-CCccEEEeecC--CCCHhHHHHHHhccCCCCeeecccccccccc
Q 004815 467 ---------------DGYD---------------W-SSIRCFGSTGE--ASNVDEYLWLMGRALYKPVIEYCGGTEIGGG 513 (729)
Q Consensus 467 ---------------~~~~---------------l-~sLr~v~~gGe--~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~ 513 (729)
.... + ..+|.+++||. +++..+. . +.++...||.||+.
T Consensus 721 lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~-----~--~i~i~~g~glTE~~-- 791 (1452)
T PTZ00297 721 LFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL-----E--HISVCYVPCLREVF-- 791 (1452)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh-----C--CceEEEecceEEee--
Confidence 0000 0 35788888873 4443221 1 36788899999953
Q ss_pred cccCCcccccccccccCCCCCcEEEEEcC-C-CCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCcee
Q 004815 514 FITGSLLQAQSLAAFSTPAMGCKLFILGN-D-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQIL 591 (729)
Q Consensus 514 ~~~~~~~~~~~~~~iG~p~~~~~~~v~d~-~-g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~ 591 (729)
+.+... .....|.|+||++++|.|. + +.. .+ .|||+++. .++++.|++.+
T Consensus 792 -~~~~~~---~~~~~G~PlpgvEvKI~~~~E~~~~--~~---~GEIlvr~--------~kdpe~T~e~~----------- 843 (1452)
T PTZ00297 792 -FLPSEG---VFCVDGTPAPSLQVDLEPFDEPSDG--AG---IGQLVLAK--------KGEPRRTLPIA----------- 843 (1452)
T ss_pred -eecCCC---CcccCCeecCceEEEEcccccccCC--CC---CCeEEEEE--------CCChHHHHHhh-----------
Confidence 222221 1123499999999999873 2 221 12 39999942 13566665522
Q ss_pred EEeCceEEEecCceEEEEcccCCeeec-CceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCC----
Q 004815 592 RRHGDVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS---- 666 (729)
Q Consensus 592 y~TGDl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~---- 666 (729)
+.|++||+|.++||++|.||. +|++|.|..||+.+ .++|.|.+++|+|-.. ..++|.|++..+
T Consensus 844 ------~gW~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l-~~sp~I~qi~V~Gd~~-----k~lvALVvpd~e~l~~ 911 (1452)
T PTZ00297 844 ------AQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIF-SQSRYVNDIFLYADPS-----RPIIAIVSPNRDTVEF 911 (1452)
T ss_pred ------CcCccCCeEEEEeccccceECCCCcEEcHHHHHHHH-hcCCCccEEEEEecCC-----CceEEEEEeCHHHHHH
Confidence 234579999999999999997 89999999999999 5999999999998432 459999987631
Q ss_pred ------CCC-------CCChHHHHH----HHHHH---HH--hhCCCCCccceEEeC-CCC-----CCCCCChhhHHHHHH
Q 004815 667 ------NYT-------PPDLNQLRM----SFNSA---VQ--KKLNPLFKVSHVVPL-PSL-----PRTATNKVMRRVLRK 718 (729)
Q Consensus 667 ------~~~-------~~~~~~l~~----~l~~~---l~--~~L~~~~~P~~i~~v-~~l-----P~t~~GKidR~~L~~ 718 (729)
+.. ..+..++.+ .+.+. +. ..+..+.+++.|.++ +.+ -+||+.|+.|+.+.+
T Consensus 912 ~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~ 991 (1452)
T PTZ00297 912 EWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHS 991 (1452)
T ss_pred HHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHH
Confidence 100 012233322 12222 22 226677888877765 345 489999999999999
Q ss_pred HHHh
Q 004815 719 QLAQ 722 (729)
Q Consensus 719 ~~~~ 722 (729)
.+.+
T Consensus 992 kY~~ 995 (1452)
T PTZ00297 992 YFSS 995 (1452)
T ss_pred HHHH
Confidence 8876
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=360.32 Aligned_cols=289 Identities=18% Similarity=0.186 Sum_probs=228.8
Q ss_pred CCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCC--CCEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCCC
Q 004815 357 EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRK--ADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSP 433 (729)
Q Consensus 357 ~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~ 433 (729)
++.++++|||||||.||||+++|+++.+.+.+....+++.. .|++++.+|++|..+. +.++.++..|+++++... .
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~-~ 173 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA-A 173 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC-C
Confidence 55789999999999999999999999988877777777644 4689999999998886 678889999999998764 5
Q ss_pred ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccc
Q 004815 434 LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGG 513 (729)
Q Consensus 434 ~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~ 513 (729)
++..+++.++.+ |++.++|++++.+.+.. .++++++. ++||+++++++++.+.+. +...+++.||+||++.+
T Consensus 174 ~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i 245 (386)
T TIGR02372 174 PASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGI 245 (386)
T ss_pred ChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccc
Confidence 566677777643 89999999999997652 34677885 678999999999988764 32468999999998864
Q ss_pred cccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEE
Q 004815 514 FITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRR 593 (729)
Q Consensus 514 ~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~ 593 (729)
++... ....|+|+|++++.+ | ++. + ..| ..|++
T Consensus 246 ~~~~~------~~~~~~~~p~~~~~~-~-~~~----------~-------------------------~g~----~~~~~ 278 (386)
T TIGR02372 246 GLREA------PDDPFRLLPDLACFA-D-TLS----------S-------------------------AGL----ARRLD 278 (386)
T ss_pred ccccC------CCCCcccCCCccccC-C-Ccc----------C-------------------------CCc----cceee
Confidence 33211 123456666655432 1 100 0 000 12689
Q ss_pred eCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCCh
Q 004815 594 HGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 673 (729)
Q Consensus 594 TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~ 673 (729)
|||+|+|++||+++|+||+||+||++|++|+|.|||++|. .||+|.+|+|+. .+ ++++|+|++++ +. +.
T Consensus 279 tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~-~~p~V~~~~v~~-----~g-~~~~a~vv~~~-~~---~~ 347 (386)
T TIGR02372 279 LQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILE-RNPRVRAAAVRL-----DG-RRLKAFIVVAE-DA---DE 347 (386)
T ss_pred cCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHH-cCCCceEEEEEc-----CC-ceEEEEEEECC-CC---Ch
Confidence 9999999999999999999999999999999999999995 999999998853 34 68999999886 33 33
Q ss_pred HHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhh
Q 004815 674 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712 (729)
Q Consensus 674 ~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKid 712 (729)
+.+.+.+++.++++||+|++|..|.++++||+|++||++
T Consensus 348 ~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 348 AELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 445566777889999999999999999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=370.38 Aligned_cols=500 Identities=17% Similarity=0.128 Sum_probs=340.2
Q ss_pred hccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEE
Q 004815 183 LSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262 (729)
Q Consensus 183 l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~ 262 (729)
+.+.+...|...+..+-......+...+.||++.+..++.+|+.|...|...|+.|++++.++.++++..++++++|+++
T Consensus 42 ~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~ 121 (1032)
T KOG1178|consen 42 FRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTF 121 (1032)
T ss_pred HHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEE
Confidence 44445566777766654433234455699999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC----HHH---HHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHH
Q 004815 263 VSIADSFA----SLE---ISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 263 vpldp~~~----~~~---l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
+|+||.+| +++ +++.+......++. .+...........++ .. .....
T Consensus 122 ~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~----------~l~i~~~~~~~~~~~------------~s----v~~~~ 175 (1032)
T KOG1178|consen 122 LPIDPSWPNSELAGYLMRIAHFLTSVELEIVR----------RLNIIDILLNSLFPK------------LS----VETIA 175 (1032)
T ss_pred EEecCCCcccccchHHHhhhhhheeccceehh----------hhhhHHHHhhccccc------------cc----hhhcc
Confidence 99999999 332 22222111111110 011111111110000 00 00001
Q ss_pred HHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHH
Q 004815 336 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL 415 (729)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 415 (729)
+.+..... ...........+++.+++.||||+||.||||.-+|..+++...|....+..+..+++-....++++-.+..
T Consensus 176 ~~f~~~~~-~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~ 254 (1032)
T KOG1178|consen 176 DSFQMVLH-NEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQK 254 (1032)
T ss_pred chhhhhhc-cCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHH
Confidence 11111110 11112223445788999999999999999999999999999999999999999999877777877777765
Q ss_pred HHHHhhcCceEEEeCCCCC---hhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCC-------------CCCCCCccEEEe
Q 004815 416 VYASLLNGASIALYNGSPL---GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID-------------GYDWSSIRCFGS 479 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~---~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~-------------~~~l~sLr~v~~ 479 (729)
...+++..+..++++...+ +..+...+++++++..+.+|+++++++...... ....+.|+....
T Consensus 255 ~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~ 334 (1032)
T KOG1178|consen 255 FIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVL 334 (1032)
T ss_pred HHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeee
Confidence 5555555555555543332 578999999999999999999988887653221 112346899999
Q ss_pred ecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCccccc--------ccccccCCCC--CcEEEEEcCCCCccCC
Q 004815 480 TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQ--------SLAAFSTPAM--GCKLFILGNDGCPIPQ 549 (729)
Q Consensus 480 gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~--------~~~~iG~p~~--~~~~~v~d~~g~~~p~ 549 (729)
+||+....++..+...+.-.-...-|+.|+.............. ...+.+.-+- .+.+..+...|.+++.
T Consensus 335 ~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 414 (1032)
T KOG1178|consen 335 GGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEG 414 (1032)
T ss_pred cCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeeccCcccCC
Confidence 99999988876444333212233448888877644332221100 0011111111 1344555555666665
Q ss_pred CCCceeEEEeec-----cccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeec
Q 004815 550 NVPGMGELALSP-----LIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVS 624 (729)
Q Consensus 550 g~~giGel~v~~-----~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~ 624 (729)
++ |-.+++. .++..+ +..++.....|... +..-+|+|||||+|+..++|.+.+.||.|+|||+||+||+
T Consensus 415 ~v---~~~~l~~~~~~~~~~~~g--~~~~~~~~~~~~~~-d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~ 488 (1032)
T KOG1178|consen 415 GV---GKGCLGAEQNLSSWVVDG--YSTPENFLPNFLTV-DGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIE 488 (1032)
T ss_pred cc---cceeecccccccceeecc--ccchhhcCCccccc-ccchhhcccccccceeecCCCEEEEEeccceEEEccEEEe
Confidence 55 2333322 222211 22222222212110 1223689999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCC
Q 004815 625 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLP 704 (729)
Q Consensus 625 ~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP 704 (729)
++||+.++. .||.|.++.+.++.+...+ +++++|++... +. ...+...|++++.++|++||+|+.++.++++|
T Consensus 489 L~ei~t~v~-~~p~v~~~itl~~~~~~~~-~~l~aFvv~~~-~~----~~~~~~~i~~~l~~~La~y~vPs~~V~l~~vP 561 (1032)
T KOG1178|consen 489 LGELNTVVE-VHPDVKEAITLARENSTVG-QTLLAFVVERG-GS----KSVLIRDIRNYLKKELASYMLPSLVVPLAKVP 561 (1032)
T ss_pred hhhhchhhc-cCcchhhhheeeeeccccC-ceEEEEEeccC-CC----CchhHHHHHHhhcccccceecceEEEEhhhCC
Confidence 999999995 8899999999999988776 89999999886 33 22336778889999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHh
Q 004815 705 RTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 705 ~t~~GKidR~~L~~~~~~ 722 (729)
+|++||||+++|.+....
T Consensus 562 l~~~GKvDkkaL~~~~s~ 579 (1032)
T KOG1178|consen 562 LNPNGKVDKKALLEYNSK 579 (1032)
T ss_pred cCCCCCcChhhhhhhhhh
Confidence 999999999999984433
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=329.16 Aligned_cols=328 Identities=20% Similarity=0.190 Sum_probs=240.8
Q ss_pred CCCCCeeEEEeccCCCCCCceEEeCCchHHHHHH---HHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEEEe
Q 004815 354 QPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA---DAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIALY 429 (729)
Q Consensus 354 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~ 429 (729)
.+.+++++++|||||||.||+|+++|.++..... .....+++.++|+++...++++..+. ...+.++..|++++..
T Consensus 72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 3567889999999999999999999998765432 23345789999999887766654443 3456788899998876
Q ss_pred CCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCC--CCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccc
Q 004815 430 NGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG 507 (729)
Q Consensus 430 ~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~ 507 (729)
+. .++..+++.|+++++|++.++|+++..|++....... ...++|.+++|||+++++..+++.+.++ +++++.||+
T Consensus 152 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~~YG~ 229 (422)
T TIGR02155 152 SG-GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLG-MKATDIYGL 229 (422)
T ss_pred CC-CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhC-CceEecccc
Confidence 54 3467899999999999999999999988765322222 2358999999999999999888887765 899999999
Q ss_pred cccccccccCCcccccccccccCCC--CCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCccccccccccccccccc
Q 004815 508 TEIGGGFITGSLLQAQSLAAFSTPA--MGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584 (729)
Q Consensus 508 TE~~~~~~~~~~~~~~~~~~iG~p~--~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p 584 (729)
||+++..+...... ...|.++ ++..++|+| ++|+++|.|++ |||++++.. +..| |
T Consensus 230 tE~~~~~~~~~~~~----~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~--Gelvvt~~~-------------~~~~---p 287 (422)
T TIGR02155 230 SEVIGPGVAMECVE----TQDGLHIWEDHFYPEIIDPHTGEVLPDGEE--GELVFTTLT-------------KEAL---P 287 (422)
T ss_pred hhhcCCceeecccc----cCCCceEecCeeEEEEECCCCCCCCCCCCe--eEEEEecCC-------------cccc---c
Confidence 99852111111100 1123333 356778999 57999999997 999996421 1122 2
Q ss_pred CCCCceeEEeCceEEEecC-c-----eEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 585 SRNGQILRRHGDVFERTSG-G-----YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 585 ~~~g~~~y~TGDl~~~~~d-G-----~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
. .||+|||+++++++ | .+++.||.||+||++|.+|+|.|||++|. .||+|.....+.+...... +.++
T Consensus 288 ~----~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~-~~~~v~~~~q~~~~~~~~~-~~~~ 361 (422)
T TIGR02155 288 V----IRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVIL-KMDELSPHYQLELTRNGHM-DELT 361 (422)
T ss_pred e----eeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHH-hCcCcCCCEEEEEEcCCCc-cEEE
Confidence 1 28999999999876 4 57899999999999999999999999995 9999985555555544433 5677
Q ss_pred EEEEecCCCCC----CCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHH
Q 004815 659 IVVVFKDSNYT----PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714 (729)
Q Consensus 659 a~vv~~~~~~~----~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~ 714 (729)
+.|+... +.. ..+..++.+.|++.+++.+..++. -.|+.+++||+|+ ||+.|.
T Consensus 362 ~~v~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 362 LKVELKP-ESYTLRLHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred EEEEEec-CcccccchHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 7777764 220 112345567777888888877642 2344457999988 999763
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=269.61 Aligned_cols=327 Identities=16% Similarity=0.039 Sum_probs=217.6
Q ss_pred cCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHh---hCCCCCCCEEEEccCcchhhhHHH-HHHHhhcCceEEE
Q 004815 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC---HMDIRKADIVAWPTNLGWMMGPWL-VYASLLNGASIAL 428 (729)
Q Consensus 353 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~-i~~~L~~G~~lvl 428 (729)
..+.++++.+.|||||||+||+|.++|.++......... ..+++++|+++...+++++.+.+. .++++..|++++.
T Consensus 82 ~~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~ 161 (445)
T TIGR03335 82 SADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP 161 (445)
T ss_pred cCCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence 345678899999999999999999999998765544332 358999999999999888777644 4567788888754
Q ss_pred eCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCC--CCCCccEEEeecCCCCHhHHHHHHhccCCCCeeeccc
Q 004815 429 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 506 (729)
Q Consensus 429 ~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 506 (729)
... ....+++|+++++|++..+|+.+..|.+....... ..+++|.+++|||+++++..+++.+.+ +++++|.||
T Consensus 162 ~~~---~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG 237 (445)
T TIGR03335 162 EGK---CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYG 237 (445)
T ss_pred CCc---hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCC
Confidence 322 24568899999999999999998877654322221 246899999999999999888877665 489999999
Q ss_pred ccccccccccCCcccccccccccCC--CCCcEEEEEcCCC-CccCCCCCceeEEEeeccccCCCcccccccccccccccc
Q 004815 507 GTEIGGGFITGSLLQAQSLAAFSTP--AMGCKLFILGNDG-CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGM 583 (729)
Q Consensus 507 ~TE~~~~~~~~~~~~~~~~~~iG~p--~~~~~~~v~d~~g-~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~ 583 (729)
+||+++...+ .. ..|.. .+.+.++|+|+++ +++|.|+. |||+++...-.. .....-++
T Consensus 238 ~TE~~~~~~c-~~-------~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~--GELvvT~L~~~~-------~r~~~Pli-- 298 (445)
T TIGR03335 238 STEGTMCGEC-QA-------VAGLHVPEDLVHLDVYDPRHQRFLPDGEC--GRIVLTTLLKPG-------ERCGSLLI-- 298 (445)
T ss_pred hhhhhheEEe-cC-------CCCccccCCceEEEEEcCCCCCCCcCCCc--eEEEEEecCCCC-------ccCCceEE--
Confidence 9998632211 11 11333 3457899999874 57899997 999996542110 00011123
Q ss_pred cCCCCceeEEeCceEEEec-C----ce----EEEEcccCCeeecCceeechHHHHHHHhcCC---CCeeeeE-EEeecCC
Q 004815 584 PSRNGQILRRHGDVFERTS-G----GY----YRAHGRADDTMNLGGIKVSSVEIERICNAVD---SNVLETA-AIGVPPP 650 (729)
Q Consensus 584 p~~~g~~~y~TGDl~~~~~-d----G~----l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~---p~V~~a~-Vv~~~~~ 650 (729)
-|+|||++++.. + |. +..+||.||+++++|.+|+|.+||++|. .+ +++..-. ++...+.
T Consensus 299 -------RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~-~~~~~~~~~~~~~~~~~~~~ 370 (445)
T TIGR03335 299 -------NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVF-QRENMDSLTGEYEAFLYGEE 370 (445)
T ss_pred -------EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHh-ccCCCCCCCccEEEEEecCC
Confidence 399999999732 2 21 4457999999999999999999999996 64 5554222 3322222
Q ss_pred CCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCC-------CCCccceEEe--CCCCCCCC-CChhhH
Q 004815 651 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN-------PLFKVSHVVP--LPSLPRTA-TNKVMR 713 (729)
Q Consensus 651 ~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~-------~~~~P~~i~~--v~~lP~t~-~GKidR 713 (729)
.+...+...|...+ +. ..+.+++.+.+.+.+-..++ ...+...+.+ -..||+++ .||..|
T Consensus 371 -~~~~~~~v~~e~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 371 -EGEITLRVSLECED-KD-NCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred -CCCceEEEEEEecC-cc-cchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 22235555555544 22 12334555444443111121 1122223333 35799984 688765
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-26 Score=251.38 Aligned_cols=516 Identities=14% Similarity=0.112 Sum_probs=342.5
Q ss_pred hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAI 255 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vv~~LA~ 255 (729)
-+.-++|+..++++||.+|+..-+.. ..+..++||++|..+|.++|..|..+ -+++||.|+++.+++.|++++++||
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~--~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~C 847 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNAR--GATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYAC 847 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccC--CcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHH
Confidence 34567788889999999999987662 35567999999999999999999977 4899999999999999999999999
Q ss_pred HHcCCEEEecCCCCC------HHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCC
Q 004815 256 VLAGYIVVSIADSFA------SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRD 329 (729)
Q Consensus 256 l~aGa~~vpldp~~~------~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 329 (729)
+.+|.+++|+.|... ...+..+++.++++.|+++.......+.-+....+.+.+-+.+++.+....
T Consensus 848 ly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~-------- 919 (1363)
T KOG3628|consen 848 LYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE-------- 919 (1363)
T ss_pred HhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch--------
Confidence 999999999988543 346888999999999999986543333333333333322222222221110
Q ss_pred CCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcch
Q 004815 330 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGW 409 (729)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 409 (729)
+|..-...... .....++....++.+||+=+.--++|.--||..+|.++++.++...+.+.+.+..-++...+++-
T Consensus 920 ---t~~k~~~~~~k-~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~s 995 (1363)
T KOG3628|consen 920 ---TIRKRKKNIKK-LNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYS 995 (1363)
T ss_pred ---hhhhhhhhhhc-cCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCcc
Confidence 01111111100 11122334455788999999888999999999999999999999999998888887777777776
Q ss_pred hhhH-HHHHHHhhcCceEEEeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCC-------CCCCccEEE
Q 004815 410 MMGP-WLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY-------DWSSIRCFG 478 (729)
Q Consensus 410 ~~~~-~~i~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~-------~l~sLr~v~ 478 (729)
..|+ ...+...++|...++.+.. .++..|+..|++++|.-++.+=..+..+.+....... ++++ ..++
T Consensus 996 Glgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~-s~vv 1074 (1363)
T KOG3628|consen 996 GLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSS-SIVV 1074 (1363)
T ss_pred chhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhccccc-ceee
Confidence 6665 3455777888887776532 2667799999999999998888888877654322222 2222 3344
Q ss_pred eecCCCCHhHHHHHHhccC----CC-Ce-------------eecccccccccccccCCcc-----------ccc--cccc
Q 004815 479 STGEASNVDEYLWLMGRAL----YK-PV-------------IEYCGGTEIGGGFITGSLL-----------QAQ--SLAA 527 (729)
Q Consensus 479 ~gGe~l~~~~~~~~~~~~~----~~-~l-------------~~~YG~TE~~~~~~~~~~~-----------~~~--~~~~ 527 (729)
..-|+....+..-+.+.+. .. .+ ++.|-.-|-+....-.... .+. ....
T Consensus 1075 ~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~d 1154 (1363)
T KOG3628|consen 1075 PAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYD 1154 (1363)
T ss_pred ecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCcccccc
Confidence 4444444444433332221 00 11 1222222221110000000 000 0112
Q ss_pred ccCCCCCcEEEEEcCC-CCccCCCCCceeEEEeeccccCCCccccccccccccccc---ccCCCCceeEEeCceEEEe--
Q 004815 528 FSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG---MPSRNGQILRRHGDVFERT-- 601 (729)
Q Consensus 528 iG~p~~~~~~~v~d~~-g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~---~p~~~g~~~y~TGDl~~~~-- 601 (729)
.|.-.+++++.|++++ ..+|..|+- ||||+.+..-...+....++.....|.. .....+..|-||||+|+..
T Consensus 1155 SG~~~~~~~i~IvnPEtk~pc~dge~--GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t 1232 (1363)
T KOG3628|consen 1155 SGKLPVYTDIAIVNPETKGPCRDGEL--GEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRT 1232 (1363)
T ss_pred CCcccccceeEEeCCccccccccCCc--ceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeee
Confidence 3777789999999976 557888875 9999943221111110111122222221 1223366799999999974
Q ss_pred ----cC----ceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCCh
Q 004815 602 ----SG----GYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 673 (729)
Q Consensus 602 ----~d----G~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~ 673 (729)
.+ ..||++|-.++.+.++|.|..|.+||..+.+.||.|.+|+|+-. + ..+|..+.... +...
T Consensus 1233 ~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~-----~-glvVvviE~~g----q~~~ 1302 (1363)
T KOG3628|consen 1233 SLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQA-----T-GLVVVVIECHG----QQEL 1302 (1363)
T ss_pred ecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEee-----C-CeEEEEEEecC----chhH
Confidence 22 45899999999999999999999999999889999999999864 2 46776666655 2344
Q ss_pred HHHHHHHHHHHHhhCCCCC-ccceEEeCCC--CCCCCCChhhHHHHHHHHHh
Q 004815 674 NQLRMSFNSAVQKKLNPLF-KVSHVVPLPS--LPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 674 ~~l~~~l~~~l~~~L~~~~-~P~~i~~v~~--lP~t~~GKidR~~L~~~~~~ 722 (729)
..|...+.+. .|..+. +...+++++. +|+++.|...|..+++.+..
T Consensus 1303 ~~LvPlIv~~---vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~ 1351 (1363)
T KOG3628|consen 1303 ADLVPLIVNV---VLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLA 1351 (1363)
T ss_pred hhhhHHHHHH---HHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHh
Confidence 5555554433 343444 4466667764 99999999999999888754
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=221.60 Aligned_cols=220 Identities=19% Similarity=0.133 Sum_probs=162.0
Q ss_pred ccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEE
Q 004815 184 SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262 (729)
Q Consensus 184 ~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~ 262 (729)
...++++|+++|+++.+++ .+...++||+||.++++++|+.|++ .|+++||||+|+++|+++++++++|++++|+++
T Consensus 3 ~~~~~~~p~~~al~~~~~~--~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~ 80 (227)
T TIGR03089 3 SPLLAADPASPRLTFYDDA--TGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEV 80 (227)
T ss_pred hhhhhhCCCCcEEEEEcCC--CCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEE
Confidence 3456779999999875321 0122479999999999999999998 799999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCC--CCCcccccCCCCcCHHHHHHH
Q 004815 263 VSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAK--GSSFSMKLRDGDISWLDFLER 340 (729)
Q Consensus 263 vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~ 340 (729)
+|++ +++++++|++++...... ....++.+... ..........+...|.+....
T Consensus 81 vp~n-------------~s~a~~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (227)
T TIGR03089 81 VLAG-------------DPDADVVVTGPDRLAAAA-----------GSGEVVALSLDPLGRRVAGELPPGVIDFAPEVRV 136 (227)
T ss_pred EeCC-------------CCCCCEEEeCcchhhhcc-----------cCCceEEEeccccccCCCCCCCCcccchhhhhhc
Confidence 9995 889999999886542211 11233333210 000000011223455554432
Q ss_pred hhccccCccccc-cCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HHHHH
Q 004815 341 VRKLKENEFAAV-EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYA 418 (729)
Q Consensus 341 ~~~~~~~~~~~~-~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~ 418 (729)
.. ....+. ...++|+|.|+||||+ +|++++... ..++++++|+++ .+|++|..++ ..++.
T Consensus 137 ~~----~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~ 198 (227)
T TIGR03089 137 HG----DQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLA 198 (227)
T ss_pred cC----CCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHH
Confidence 11 111112 3467999999999985 566655443 557889999999 9999999998 57899
Q ss_pred HhhcCceEEEeCCCCChhhHHHHHHHcCCc
Q 004815 419 SLLNGASIALYNGSPLGSGFAKFVQDAKVT 448 (729)
Q Consensus 419 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt 448 (729)
+|..|+++++.+ .+++..+++.|+++|||
T Consensus 199 ~l~~G~t~v~~~-rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 199 PLAAGGSLVLVT-HPDPARLDQIAETERVT 227 (227)
T ss_pred HhccCceEEEec-CCCHHHHHHHHHhhcCC
Confidence 999999999996 58999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=204.58 Aligned_cols=326 Identities=23% Similarity=0.209 Sum_probs=226.5
Q ss_pred cCCCCCeeEEEeccCCCCCCceEEeCCchHHH---HHHHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEEE
Q 004815 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFK---AAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 428 (729)
Q Consensus 353 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl 428 (729)
.++-++...|--||||||+|+-+..++..+-. .+.......+...+|++.....++...+- ...+++--.|++++=
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip 165 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP 165 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence 34456666788999999999999999986544 33344455689999999887776644443 455566667766554
Q ss_pred eCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCC--CCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeeccc
Q 004815 429 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDG--YDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 506 (729)
Q Consensus 429 ~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~--~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 506 (729)
..+ -..+...++|+.+++|++.++|+.+..|++.....+ ..-.+||.+++|+|+++++..+.+..+++ ++.++.||
T Consensus 166 ~~~-g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g-~~~~diYG 243 (438)
T COG1541 166 ISG-GNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFG-CKAFDIYG 243 (438)
T ss_pred cCC-ccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhC-Cceeeccc
Confidence 332 355778899999999999999999999988654332 23367999999999999999988887775 88899999
Q ss_pred cccccccc-ccCCcccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccccCCCccccccccccccccccc
Q 004815 507 GTEIGGGF-ITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584 (729)
Q Consensus 507 ~TE~~~~~-~~~~~~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p 584 (729)
.||..+.- ..+.... -.--+-+..-+.|+|+ .|+.+|.|.. |||+++...- +..-++
T Consensus 244 ltE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~dP~t~e~l~dge~--GelV~T~L~~-----------~~~PlI--- 302 (438)
T COG1541 244 LTEGFGPGAGECTERN-----GLHIWEDHFIFEIVDPETGEQLPDGER--GELVITTLTK-----------EGMPLI--- 302 (438)
T ss_pred cccccCCccccccccc-----CCCcchhhceeeeecCCcCccCCCCCe--eEEEEEeccc-----------cCcceE---
Confidence 99987652 1111111 1112345688899995 6999999997 9999864321 111233
Q ss_pred CCCCceeEEeCceEEEecC----ce-----EEEEcccCCeeecCceeechHHHHHHHhcCCCCee-eeEEEeecCCCCCc
Q 004815 585 SRNGQILRRHGDVFERTSG----GY-----YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVL-ETAAIGVPPPDGGP 654 (729)
Q Consensus 585 ~~~g~~~y~TGDl~~~~~d----G~-----l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~-~a~Vv~~~~~~~g~ 654 (729)
-|+|||+++..++ |. ..+.||+||+++++|.+|+|..||++|. +.+.+. +-.++... .++.
T Consensus 303 ------RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~-~~~~~~~~yqi~~~~--~~~~ 373 (438)
T COG1541 303 ------RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLL-QIPEVTPHYQIILTR--NGGL 373 (438)
T ss_pred ------EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHh-cccCCCceEEEEEec--CCCC
Confidence 3999999999763 32 3589999999999999999999999997 899888 44444433 2333
Q ss_pred eeEEEEEEecCCCCC-CCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhH
Q 004815 655 EQLTIVVVFKDSNYT-PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMR 713 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~-~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR 713 (729)
..+.+-|+..+ +.. ..+..++.+.+...+...+... +--.++.+.++|+|.. |..|
T Consensus 374 d~L~V~vE~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~v~~v~~g~l~r~~~-K~kr 430 (438)
T COG1541 374 DELTVRVELEN-EAEELEDERRLAKKLIKNIKSELGVR-VEVELVEPGELPRTEG-KAKR 430 (438)
T ss_pred ceEEEEEEecC-cccchHHHHHHHHHHHHHHHhhcCCc-eEEEEEeccceecccC-ceeE
Confidence 67888888876 220 1112222345555555544321 1134556678999974 6543
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=203.31 Aligned_cols=116 Identities=22% Similarity=0.257 Sum_probs=103.9
Q ss_pred eeEEeCceEEE-ecCceEEEEcccCCeeecCc---eeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecC
Q 004815 590 ILRRHGDVFER-TSGGYYRAHGRADDTMNLGG---IKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 665 (729)
Q Consensus 590 ~~y~TGDl~~~-~~dG~l~~~GR~d~~iki~G---~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 665 (729)
.||+|||+|++ |+||+++|.||.| +| ++|+|. ||++|. +||+|.+|+|++++++..| +.++|||++..
T Consensus 209 gW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~-~hp~V~eaaVvgvpd~~~g-e~v~A~Vv~~~ 280 (365)
T PRK09188 209 IWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALK-SDPAVSDVAIALFSLPAKG-VGLYAFVEAEL 280 (365)
T ss_pred cEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHH-hCCCccEEEEEEEEcCCCC-eEEEEEEEECC
Confidence 39999999998 6999999999998 88 799999 999995 9999999999999999888 89999999875
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 666 SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 666 ~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
..+.+++++ +++++||+ ++|..|.++++||+|+||||+|++|+.++.+
T Consensus 281 ----~~~~~el~~----~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~ 328 (365)
T PRK09188 281 ----PADEKSLRA----RLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMN 328 (365)
T ss_pred ----CCCHHHHHH----HHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhc
Confidence 345666666 57788999 9999999999999999999999999998643
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-14 Score=155.33 Aligned_cols=258 Identities=15% Similarity=0.049 Sum_probs=160.6
Q ss_pred eEEEeccCCCCCCceEEeCCchHHHHHHHH---HhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCce-EEEeCCCCCh
Q 004815 360 TNILFSSGTTGEPKAIPWTNATPFKAAADA---WCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS-IALYNGSPLG 435 (729)
Q Consensus 360 a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~-lvl~~~~~~~ 435 (729)
..+..||||||+|-.+.++........... ....++..++++..+. +..+ .++.++.+... +..++-..+.
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~--~ly~~~~~~~~~~~~~~l~~~~ 176 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADN--NLYQSVNNRWISLDFFDLLAPF 176 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccCh--hHHHHHHhccceeeecCCCcCH
Confidence 457789999999999999987653322211 1223566777765542 1110 11222222211 2333322345
Q ss_pred hhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccc
Q 004815 436 SGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFI 515 (729)
Q Consensus 436 ~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 515 (729)
+..++.|++++++++.+.|+.+..|++.......+ .+++.++++||.+++...+.+.+.++ +++++.||+|| +....
T Consensus 177 ~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~~YG~tE-g~la~ 253 (430)
T TIGR02304 177 QAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQIYQATE-GFLAS 253 (430)
T ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeEccCCch-hheEE
Confidence 67899999999999999999999998864333323 46899999999999988777777775 89999999999 44322
Q ss_pred cCCcccccccccccCCCCCcEEE--EEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEE
Q 004815 516 TGSLLQAQSLAAFSTPAMGCKLF--ILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRR 593 (729)
Q Consensus 516 ~~~~~~~~~~~~iG~p~~~~~~~--v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~ 593 (729)
.+... . .-.--..+-+. ++|+++++ ..+|+...- ...-++ -|+
T Consensus 254 eC~~g-~-----lHl~ed~~~vE~~ivD~~~~~---------~~ViT~L~n-----------~~~PlI---------RYr 298 (430)
T TIGR02304 254 TCRCG-T-----LHLNEDLVHIEKQYLDEHKRF---------VPIITDFTR-----------TTQPIV---------RYR 298 (430)
T ss_pred ecCCC-C-----EEEccccEEEEeeEECCCCce---------EEEEecCCC-----------ccceEE---------eee
Confidence 22111 0 00111223344 78877643 334432211 111233 399
Q ss_pred eCceEEEecC----ce----E-EEEcccCCeeec---Cc--eeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEE
Q 004815 594 HGDVFERTSG----GY----Y-RAHGRADDTMNL---GG--IKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 659 (729)
Q Consensus 594 TGDl~~~~~d----G~----l-~~~GR~d~~iki---~G--~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a 659 (729)
|||++++.++ |. | .+.||.||++++ +| ..|.|..|+.+|....++|.+.-++-.. . ..+..
T Consensus 299 tGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~---~--~~l~v 373 (430)
T TIGR02304 299 LNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG---S--AQLEL 373 (430)
T ss_pred CCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc---C--CeEEE
Confidence 9999988543 32 3 378999999985 34 5569999998864467889888776421 1 35665
Q ss_pred EEEecC
Q 004815 660 VVVFKD 665 (729)
Q Consensus 660 ~vv~~~ 665 (729)
.++...
T Consensus 374 ~~~~~~ 379 (430)
T TIGR02304 374 IADCEL 379 (430)
T ss_pred EEEeCh
Confidence 665543
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=159.73 Aligned_cols=490 Identities=14% Similarity=0.083 Sum_probs=301.4
Q ss_pred CCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHH-HHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCCEEEe
Q 004815 188 KRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAY-ALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVS 264 (729)
Q Consensus 188 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~-~L~~~Gv~~gd~Vai~~~~s--~~~vv~~LA~l~aGa~~vp 264 (729)
..++..+|.++-+.. |....+||..+..++.+.|+ .|.+-|.+++|+|.++...+ .++++..++|.-+|.+.+|
T Consensus 105 nhs~~~ta~i~id~k---gk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp 181 (1363)
T KOG3628|consen 105 NHSATSTAHICIDKK---GKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVP 181 (1363)
T ss_pred cCCCCCceEEEEcCC---CceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeecc
Confidence 567888999998874 34779999999999999999 67777999999999998876 7999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhcc
Q 004815 265 IADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKL 344 (729)
Q Consensus 265 ldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (729)
+.+.++.+++..+++-...+++++.....+......... .......+|..........
T Consensus 182 ~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~----------------------s~~k~v~~w~t~~~k~~~~ 239 (1363)
T KOG3628|consen 182 LSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV----------------------SLAKAVAWWKTNDFKGNYT 239 (1363)
T ss_pred chhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc----------------------cHHHHHHhhhcccccceee
Confidence 999999999999999999999999876432221111000 0000011111100000000
Q ss_pred -ccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHH---------------HH-----HhhCCCCCCCEEEE
Q 004815 345 -KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA---------------DA-----WCHMDIRKADIVAW 403 (729)
Q Consensus 345 -~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---------------~~-----~~~~~~~~~d~~l~ 403 (729)
....-+.-.. + ..||-||++++|.--||+.+|+ ++...+ +. ...+++...+.++.
T Consensus 240 ~~k~~~P~~~~-~--~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~ 315 (1363)
T KOG3628|consen 240 KDKIKKPRMQL-P--YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLT 315 (1363)
T ss_pred hhhccCCceee-e--eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceee
Confidence 0001111111 2 7899999999999999999997 332221 11 12245566677766
Q ss_pred ccCcchhhhH-HHHHHHhhcCceEEEeCCCC--ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC-----------CCCC
Q 004815 404 PTNLGWMMGP-WLVYASLLNGASIALYNGSP--LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-----------IDGY 469 (729)
Q Consensus 404 ~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~~--~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~-----------~~~~ 469 (729)
....+-..|+ .+++.+|.+|.|.+.++... .|..+.+++.++|.+++..=-..|++...... ....
T Consensus 316 ~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~ 395 (1363)
T KOG3628|consen 316 NLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTP 395 (1363)
T ss_pred ccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCC
Confidence 6655555555 56889999999999998754 45578899999999988776555544322100 1125
Q ss_pred CCCCccEEEeecCCCCHhHHH----HHHhccCC--CC---------------eeecccccccccccccCCcc--------
Q 004815 470 DWSSIRCFGSTGEASNVDEYL----WLMGRALY--KP---------------VIEYCGGTEIGGGFITGSLL-------- 520 (729)
Q Consensus 470 ~l~sLr~v~~gGe~l~~~~~~----~~~~~~~~--~~---------------l~~~YG~TE~~~~~~~~~~~-------- 520 (729)
+++++|..++.-..+..+-.+ +|..-.+. .+ .+.+=+.+|.+....-.+..
T Consensus 396 d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e 475 (1363)
T KOG3628|consen 396 DLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGE 475 (1363)
T ss_pred CccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccc
Confidence 689999999999998877432 23221110 11 11222234444322111110
Q ss_pred ---------------------cccccccccCCCC-CcEEEEEcCC-CCccCCCCCceeEEEeeccccCCCcccccccccc
Q 004815 521 ---------------------QAQSLAAFSTPAM-GCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYD 577 (729)
Q Consensus 521 ---------------------~~~~~~~iG~p~~-~~~~~v~d~~-g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~ 577 (729)
.......+|.-.+ .+.+.|++++ .+.|..++. |||||.....+..++- -+..|.
T Consensus 476 ~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eV--GEIwVsS~~~~~~~~a-l~~~t~ 552 (1363)
T KOG3628|consen 476 GLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEV--GEIWVSSNSLGKLFYA-LDKQTE 552 (1363)
T ss_pred eeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcc--eeEEEecCCcccceee-cccccc
Confidence 0001112344333 3566677765 668889985 9999976666544432 222233
Q ss_pred ccccccc------CCCCceeEEeCceEEEecCceEEEEcccCCee-ecCceeechHHHHH---------HHhcCCCCeee
Q 004815 578 VYFSGMP------SRNGQILRRHGDVFERTSGGYYRAHGRADDTM-NLGGIKVSSVEIER---------ICNAVDSNVLE 641 (729)
Q Consensus 578 ~~f~~~p------~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~i-ki~G~ri~~~eIE~---------~L~~~~p~V~~ 641 (729)
.-|...| ......+.|||=+|++.+++ ++++|-.+|++ .+.|.+....+|-. .+++..+.|-+
T Consensus 553 ~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gk-i~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~ 631 (1363)
T KOG3628|consen 553 NTFKATPVESSGKPPSNVPFMRTGLLGFVHNGK-IYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFD 631 (1363)
T ss_pred ceEEeeeccccCCCCccchhhhhcceeeeeCCe-EEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEE
Confidence 3333222 22234578999999997555 66666555555 56888776655432 22245667888
Q ss_pred eEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCcc----ceEEeCCCCCCCCCChhhHHHHH
Q 004815 642 TAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV----SHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 642 a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P----~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
+.|+- +++++..++-++ .. ..++-.++..+.+ +.+-..+.. -.++.-+.||+|+-|-|.-..++
T Consensus 632 ~saf~-------~E~~~Vv~~esP-~a---~e~~~~q~~~~v~-q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k 699 (1363)
T KOG3628|consen 632 VSAFE-------DEHIVVVVLESP-DA---TEENSFQWMSRVF-QALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECK 699 (1363)
T ss_pred Eeeee-------cceEEEEEEeCc-ch---hhhhhhhHHHHHH-HHHHHHhcccceEEEEeccccCCCccccccccHHHH
Confidence 77764 255655555444 22 2222222222222 222222222 24566688999998889999999
Q ss_pred HHHHh
Q 004815 718 KQLAQ 722 (729)
Q Consensus 718 ~~~~~ 722 (729)
+.|.+
T Consensus 700 ~~F~~ 704 (1363)
T KOG3628|consen 700 QAFLE 704 (1363)
T ss_pred HHHHc
Confidence 99876
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-12 Score=104.26 Aligned_cols=70 Identities=37% Similarity=0.553 Sum_probs=58.1
Q ss_pred HHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCcc--ceEEeCCC-C
Q 004815 627 EIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV--SHVVPLPS-L 703 (729)
Q Consensus 627 eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P--~~i~~v~~-l 703 (729)
|||++|. +||+|.+|+|++.+++..| +.++||+++ . .++ |+++++++||+||+| ..++.+++ |
T Consensus 1 EIE~~l~-~~~~V~~~~V~~~~d~~~g-~~l~a~vv~-~-------~~~----i~~~~~~~l~~~~~P~~~~~v~~~~~l 66 (73)
T PF13193_consen 1 EIESVLR-QHPGVAEAAVVGVPDEDWG-ERLVAFVVL-D-------EEE----IRDHLRDKLPPYMVPRRIRFVRLDEEL 66 (73)
T ss_dssp HHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEE-H-------HHH----HHHHHHHHS-GGGS-SEEEEEEESSSE
T ss_pred CHHHHHh-cCCCccEEEEEEEEccccc-ccceeEEEe-e-------ecc----cccchhhhCCCcceeeEEEEccccCcC
Confidence 8999995 9999999999999998888 899999987 2 244 444688899999999 66777788 9
Q ss_pred CCCCCCh
Q 004815 704 PRTATNK 710 (729)
Q Consensus 704 P~t~~GK 710 (729)
|+|+|||
T Consensus 67 P~t~~GK 73 (73)
T PF13193_consen 67 PRTPSGK 73 (73)
T ss_dssp EBETTSS
T ss_pred CCCCCCC
Confidence 9999999
|
... |
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=9e-12 Score=105.21 Aligned_cols=82 Identities=11% Similarity=0.016 Sum_probs=49.9
Q ss_pred CCccchHHHHHhhcCCCC---CCchhheeeeeecCCCC----CC-CCCccCChhhhhhCcHHHHHHHhccccccCC-CCC
Q 004815 44 ATPATWQNITTHILSPDL---PFSFHQLLYYGCYKDFG----PD-PPAWIPDPEAAKVTNVGKLLQTRGEEFLGSG-YKD 114 (729)
Q Consensus 44 ~hq~~Pfe~lv~~l~~~r---~~~~~~~~f~~~~~~~~----~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~ 114 (729)
+||+|||++||++|+++| ++|+||+||.+++.... .+ .....+.....++|||.+.+.+.++++.+.+ |++
T Consensus 1 ~hq~~Pf~~lv~~l~~~r~~~~~plfqv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~l~~~~~~~~l~~~~~Y~~ 80 (91)
T PF13745_consen 1 EHQDYPFERLVEALGPPRDPSRNPLFQVMFNYQNFSQSALDLGGLRLEPIPLENGGAKFDLTLEVREDGDGLRLQLEYNT 80 (91)
T ss_dssp -T--S-HHHHHHHT-----TTS-SS-SEEEEEE----S----SSEEEEE-SS--SB-SSSEEEEEEE-SS-EEEEEEEET
T ss_pred CCccCCHHHHHHHhCcccCCccccccCeEEEEEecccccccCCCceEEEeeccccceeeeEEEEEEecCCeEEEEEEEEh
Confidence 699999999999999887 58999999999998751 11 1122333456799999999999999999999 999
Q ss_pred CCCCHHHHHHHHhhCh
Q 004815 115 PISSFSNFQEFSVSNP 130 (729)
Q Consensus 115 ~~~~~~~~~~~~i~~~ 130 (729)
++|++.+|++|
T Consensus 81 -----~lf~~~ti~~~ 91 (91)
T PF13745_consen 81 -----DLFSEETIERM 91 (91)
T ss_dssp -----TT--HHHHHHH
T ss_pred -----HhCCHHHHhcC
Confidence 99999999875
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-07 Score=99.03 Aligned_cols=236 Identities=17% Similarity=0.121 Sum_probs=129.0
Q ss_pred CCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHH---HHhhCCCCCCC--EEEEccCcch-----hhhHHHHHHHhhcC
Q 004815 354 QPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD---AWCHMDIRKAD--IVAWPTNLGW-----MMGPWLVYASLLNG 423 (729)
Q Consensus 354 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d--~~l~~~~~~~-----~~~~~~i~~~L~~G 423 (729)
.+++++..++-||||||.|--+.+.+..+...... ....+...... .++...|-.. .+........+..+
T Consensus 86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
T PF04443_consen 86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG 165 (365)
T ss_pred cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence 34566778899999999986666665555443322 22333322222 2333223221 11112333444555
Q ss_pred ceEEEeCCCCChhhHHHHH----HHcCCcEEEecHHHHHHHHhcCCCC--CCCCC-CccEEEeec------CCCCHhHH-
Q 004815 424 ASIALYNGSPLGSGFAKFV----QDAKVTMLGVVPSIVRTWKSTNCID--GYDWS-SIRCFGSTG------EASNVDEY- 489 (729)
Q Consensus 424 ~~lvl~~~~~~~~~l~~~i----~~~~vt~~~~~P~~l~~l~~~~~~~--~~~l~-sLr~v~~gG------e~l~~~~~- 489 (729)
..-.+-....+.+.+...+ .+.++..++..|.++-.++...... ...|+ ..+.+-.|| +.++.+.+
T Consensus 166 ~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~ 245 (365)
T PF04443_consen 166 SRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFY 245 (365)
T ss_pred ceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHH
Confidence 5544423334555444433 4556777888887666554432222 23343 345555554 45665554
Q ss_pred HHHHhccCC---CCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCC-CCccCCCCCceeEEEeeccccC
Q 004815 490 LWLMGRALY---KPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFG 565 (729)
Q Consensus 490 ~~~~~~~~~---~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~-g~~~p~g~~giGel~v~~~~~~ 565 (729)
+.+.+.++- ..++++||+||.......+... . .++|.. +.|.|++ .+++|.|++ |-|-+-..+..
T Consensus 246 ~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~--~------~~~p~w-V~iRDp~tl~~~~~Ge~--Gli~vidl~~~ 314 (365)
T PF04443_consen 246 ARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG--H------FHVPPW-VIIRDPETLEPLPPGET--GLIQVIDLANT 314 (365)
T ss_pred HHHHHHHCCCCHHHeeeeeeccccchhheeCCCC--c------ccCCCe-EEEECCCCCcCCCCCCe--eEEEEEccccc
Confidence 445554553 3699999999977543322110 0 133333 7777864 789999997 88876332211
Q ss_pred CCcccccccccccccccccCCCCceeEEeCceEEEecC--------ceEEEEcccCCeeecCcee
Q 004815 566 ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG--------GYYRAHGRADDTMNLGGIK 622 (729)
Q Consensus 566 ~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~d--------G~l~~~GR~d~~iki~G~r 622 (729)
. .++ ..-|.|+|.+..+ .++.++||.+. -.+||-.
T Consensus 315 s-------------------~p~--~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~-ae~RGCs 357 (365)
T PF04443_consen 315 S-------------------YPG--FILTEDLGVLHGDDDCGCRKGKYFEVLGRADG-AEIRGCS 357 (365)
T ss_pred C-------------------CCc--EEEEcceeeecCCCCCCCccCCEEEEEeCCCC-CccCCcH
Confidence 0 123 2459999988654 27999999874 2345543
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.4e-06 Score=92.37 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=85.2
Q ss_pred CCCccEEEeecCCCCHhHHHHHHhccCCCCe-eecccccccccccccCCcccccccccccCCCCCc-EEEEE--cCC---
Q 004815 471 WSSIRCFGSTGEASNVDEYLWLMGRALYKPV-IEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGC-KLFIL--GND--- 543 (729)
Q Consensus 471 l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l-~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~v~--d~~--- 543 (729)
+++|+.|.+-+..-...-..+++..++++++ -..|+.||+-+.+-.. . .. +.+...++. -...+ |+.
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~---~~--~~~~l~~~~~ffEFip~~~~~~~ 339 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-P---ED--PGYVLAPDSGFFEFIPVDEDEQN 339 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--C---CC----EEE-TTSSEEEEEE-STT---
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-C---CC--CceEeecCCeEEEEEeccCCccc
Confidence 6789966654444334455666667777664 4689999975432221 1 11 111222222 12222 221
Q ss_pred ----CCc-----cCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEec--Cc--eEEEEc
Q 004815 544 ----GCP-----IPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTS--GG--YYRAHG 610 (729)
Q Consensus 544 ----g~~-----~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~--dG--~l~~~G 610 (729)
.+. +..|+. -||+|+.. + |=--|+.||++++.. ++ .|+|+|
T Consensus 340 ~~~~~~~l~~~ele~G~~--YelviTt~--~----------------------GLyRY~iGDvVrv~gf~~~~P~i~F~~ 393 (528)
T PF03321_consen 340 PSEQPKTLLLHELEVGEE--YELVITTN--S----------------------GLYRYRIGDVVRVTGFYNQTPRIEFVG 393 (528)
T ss_dssp ----SSSEEGGG--TT-E--EEEEEEST--T----------------------S-SSEEECEEEEEEEEETTEEEEEEEE
T ss_pred ccCCCceecHHHhcCCCe--EEEEEecc--c----------------------ceeeeecCCEEEEeeccCCCcEEEEec
Confidence 222 233433 45555321 1 101399999999853 44 799999
Q ss_pred ccCCeeecCceeechHHHHHHHhcC----CCCeeeeEEEeecCCCCCceeEEEEEEecC
Q 004815 611 RADDTMNLGGIKVSSVEIERICNAV----DSNVLETAAIGVPPPDGGPEQLTIVVVFKD 665 (729)
Q Consensus 611 R~d~~iki~G~ri~~~eIE~~L~~~----~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 665 (729)
|.+.++++.|.++.-.+|+++|.+. .-.+.+..|......... ..-+.|+.+..
T Consensus 394 R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~-~~Y~~~~e~~~ 451 (528)
T PF03321_consen 394 RRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNP-PHYVLFWELEG 451 (528)
T ss_dssp ETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSS-BEEEEEEEECS
T ss_pred cCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCC-CceEEEEEeCC
Confidence 9999999999999999999999643 234667666654222222 45666666665
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0076 Score=68.12 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=38.4
Q ss_pred eEEeCceEEEec----CceEEEEcccCCeeecCceeechHHHHHHHhc
Q 004815 591 LRRHGDVFERTS----GGYYRAHGRADDTMNLGGIKVSSVEIERICNA 634 (729)
Q Consensus 591 ~y~TGDl~~~~~----dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~ 634 (729)
-|+.||.+++.. --.|.|+||.+..+++.|.++.-.+++.+|..
T Consensus 409 RY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 409 RYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred EeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 389999999853 35799999999999999999999999998853
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.017 Score=64.63 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=37.9
Q ss_pred eEEeCceEEEe----cCceEEEEcccCCeeecCceeechHHHHHHHhc
Q 004815 591 LRRHGDVFERT----SGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 634 (729)
Q Consensus 591 ~y~TGDl~~~~----~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~ 634 (729)
-||.||+.+.. ..-.+.|++|.+.+..+.|.+..-.++..++..
T Consensus 422 RYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 422 RYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN 469 (612)
T ss_pred EEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence 38999998863 557899999999999999999999999888753
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.017 Score=64.87 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=37.8
Q ss_pred eEEeCceEEE----ecCceEEEEcccCCeeecCceeechHHHHHHHh
Q 004815 591 LRRHGDVFER----TSGGYYRAHGRADDTMNLGGIKVSSVEIERICN 633 (729)
Q Consensus 591 ~y~TGDl~~~----~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~ 633 (729)
-||.||+.+. +.--.+.|+||.+.+..+.|.+..-.++..++.
T Consensus 416 RYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~ 462 (606)
T PLN02247 416 RYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVT 462 (606)
T ss_pred EEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHH
Confidence 3899999876 456789999999999999999999999988885
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.001 Score=56.21 Aligned_cols=88 Identities=25% Similarity=0.379 Sum_probs=55.7
Q ss_pred ceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCC--CChHHHHHHHHHHHHhhCCCCCcc-ce
Q 004815 620 GIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP--PDLNQLRMSFNSAVQKKLNPLFKV-SH 696 (729)
Q Consensus 620 G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~--~~~~~l~~~l~~~l~~~L~~~~~P-~~ 696 (729)
|.+|+|..||++|. ++|++....-+.+....+. +.+...|...+ +... .+..++.+.+.+.++..|.- .| -.
T Consensus 1 GvnvfP~~Ie~vl~-~~~~~~~~y~i~v~~~~~~-D~l~v~vE~~~-~~~~~~~~~~~l~~~i~~~lk~~lgv--~~~V~ 75 (96)
T PF14535_consen 1 GVNVFPSQIEEVLR-EFPEVSPEYQIVVTREGGL-DELTVRVELRP-GFSDDAEDLEALAERIAERLKERLGV--RPEVE 75 (96)
T ss_dssp TEEE-HHHHHHHHC-TSTTEEEEEEEEEEEETTE-EEEEEEEEEST-TCCTTHHHHHHHHHHHHHHHHHHHSS---EEEE
T ss_pred CcEECHHHHHHHHH-hCcCCCCcEEEEEEcCCCC-cEEEEEEEECC-ccCcchHHHHHHHHHHHHHHHhhcCc--eEEEE
Confidence 78999999999994 9999994444444333333 67888888887 4301 13577888888889888753 33 34
Q ss_pred EEeCCCCCCCCCChhhH
Q 004815 697 VVPLPSLPRTATNKVMR 713 (729)
Q Consensus 697 i~~v~~lP~t~~GKidR 713 (729)
++...+||+| .||..|
T Consensus 76 lv~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 76 LVPPGTLPRS-EGKAKR 91 (96)
T ss_dssp EE-TT-S----SSSS-S
T ss_pred EECCCCccCC-CCcceE
Confidence 5556789998 688655
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.22 Score=53.49 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=77.3
Q ss_pred CeEEEEeecCCCCCCc--eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCCEEEecCCC
Q 004815 193 DIVIRWCDEGDGGLPV--KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV--NSVVIYLAIVLAGYIVVSIADS 268 (729)
Q Consensus 193 ~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~--~~vv~~LA~l~aGa~~vpldp~ 268 (729)
++..+.... |.+|.. .-+|..+....+..+|+.|...|..+||+|.++..-+. .-+-..+|+.++|++++|+.+.
T Consensus 91 ~i~~ihaSS-GTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g 169 (438)
T COG1541 91 EIVRIHASS-GTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG 169 (438)
T ss_pred ceEEEEccC-CCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc
Confidence 344344433 334443 46899999999999999999999999999999887332 2267789999999999999884
Q ss_pred CCHHHHHHHHHhcCceEEEEecce
Q 004815 269 FASLEISARLRISKAKAIFTQDLI 292 (729)
Q Consensus 269 ~~~~~l~~~l~~~~~~~vl~~~~~ 292 (729)
.-++...++++.++.+|.+.+.+
T Consensus 170 -~~~~~~~l~~df~~tvI~~tps~ 192 (438)
T COG1541 170 -NTERQLELMKDFKPTVIAATPSY 192 (438)
T ss_pred -cHHHHHHHHHhcCCcEEEEChHH
Confidence 45777889999999999998863
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=84.29 E-value=5.8 Score=43.91 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=69.3
Q ss_pred CCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCCEEEecC
Q 004815 191 LDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN--SVVIYLAIVLAGYIVVSIA 266 (729)
Q Consensus 191 pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~--~vv~~LA~l~aGa~~vpld 266 (729)
.+.++.+....| ..|. ..-+|..++...+...++.+...|+++||++.++.+.+.. .....+++.+.|+..+|..
T Consensus 85 ~~~i~~i~~TSG-TTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~ 163 (445)
T TIGR03335 85 WKDIYTIHETSG-TSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG 163 (445)
T ss_pred HHHeEEEEeCCC-CCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence 345665553332 2333 2458999999988889999988999999999999876643 2344578899999988765
Q ss_pred CCCCHHHHHHHHHhcCceEEEEec
Q 004815 267 DSFASLEISARLRISKAKAIFTQD 290 (729)
Q Consensus 267 p~~~~~~l~~~l~~~~~~~vl~~~ 290 (729)
. .+....++++.++..++...
T Consensus 164 ~---~~~~~~~i~~~~~t~l~~~p 184 (445)
T TIGR03335 164 K---CTFPIRIIESYRPTGIVASV 184 (445)
T ss_pred c---hhHHHHHHHHhCCCEEEECH
Confidence 3 23456788999999887654
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=82.40 E-value=7.3 Score=42.77 Aligned_cols=99 Identities=14% Similarity=0.055 Sum_probs=71.1
Q ss_pred CCCeEEEEeecCCCCCCc--eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCCEEEecC
Q 004815 191 LDDIVIRWCDEGDGGLPV--KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV--NSVVIYLAIVLAGYIVVSIA 266 (729)
Q Consensus 191 pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~--~~vv~~LA~l~aGa~~vpld 266 (729)
++.++.+.... |.+|.. ..+|...+......+++.+...|+++||++..+...+. ......++.++.|+..++++
T Consensus 74 ~~~~~~~~~TS-GTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 74 REQVVRIHASS-GTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred hHHcEEEEECC-CCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 34455553322 233433 35688888777777888888889999999988765543 22334677889999999997
Q ss_pred CCCCHHHHHHHHHhcCceEEEEecc
Q 004815 267 DSFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 267 p~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
+.. .+.+...|++.++++++....
T Consensus 153 ~~~-~~~~~~~i~~~~~t~l~~~Ps 176 (422)
T TIGR02155 153 GGQ-TEKQVQLIQDFKPDIIMVTPS 176 (422)
T ss_pred CCC-HHHHHHHHHHHCCCEEEEcHH
Confidence 765 477889999999999998764
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=80.08 E-value=8.9 Score=38.04 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=57.8
Q ss_pred CCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCCEEEecCC
Q 004815 190 SLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV--NSVVIYLAIVLAGYIVVSIAD 267 (729)
Q Consensus 190 ~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~--~~vv~~LA~l~aGa~~vpldp 267 (729)
.++.+|++.-.. -.|.+.+...+ ...|+.++|++. .+|-.. .+...+++++.+|++.|.+ +
T Consensus 148 ~~~D~a~l~yTs--------g~~~~~~~~~~-------~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~ 210 (227)
T TIGR03089 148 DATAPALVAGGG--------EWTGAELVAAA-------RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-T 210 (227)
T ss_pred CCCcceeeeccc--------cccHHHHHHHH-------hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-c
Confidence 456778776554 23555444332 667899999999 888654 5566899999999999988 6
Q ss_pred CCCHHHHHHHHHhcCc
Q 004815 268 SFASLEISARLRISKA 283 (729)
Q Consensus 268 ~~~~~~l~~~l~~~~~ 283 (729)
.+.++++-..+++.++
T Consensus 211 rFd~~~~l~~i~~~~v 226 (227)
T TIGR03089 211 HPDPARLDQIAETERV 226 (227)
T ss_pred CCCHHHHHHHHHhhcC
Confidence 8899999888888765
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 729 | ||||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 4e-42 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 6e-42 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 6e-42 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 1e-41 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 1e-41 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 2e-41 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 6e-41 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 2e-30 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 3e-14 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 6e-12 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 1e-08 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 1e-07 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 4e-07 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 4e-07 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 2e-06 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 3e-06 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 3e-06 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 3e-06 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 7e-06 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 5e-05 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 8e-05 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 3e-04 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 4e-04 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 5e-04 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 5e-04 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 6e-04 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 6e-04 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 6e-04 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 7e-04 |
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 3e-47
Identities = 121/595 (20%), Positives = 214/595 (35%), Gaps = 96/595 (16%)
Query: 171 LPGAFVNPAKNCL-----SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAY 225
+P F N A + L + + + W + G +EL A
Sbjct: 33 VPAKF-NFASDVLDHWADMEKAGKRPPSPALWWVNG-KG--KELMWNFRELSENSQQAAN 88
Query: 226 AL-NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAK 284
L A GL +G +A+ +P ++ L + AG I + S +I RL++SKAK
Sbjct: 89 VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAK 148
Query: 285 AIFTQDLIIRGDKSIPLYSRV--IDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDFLERV 341
AI D + V + ++ P L I + S DG +++ L
Sbjct: 149 AIVAGD---------EVIQEVDTVASECPSLRIKLLVSEKS-----CDGWLNFKKLLNE- 193
Query: 342 RKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV 401
VE + + I F+SGT+G PK + ++ A ++ +DI+
Sbjct: 194 ---ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIM 250
Query: 402 AW-PTNLGWMMGPW-LVYASLLNGASIALYNGSPLGSG-FAKFVQDAKVTMLGVVPSIVR 458
W ++ GW++ + GA ++ K + + + P + R
Sbjct: 251 -WTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYR 309
Query: 459 TWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFIT-- 516
+ + Y + ++ + GE+ + + E G TE G +
Sbjct: 310 MLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWR-AQTGLDIRESYGQTETGLTCMVSK 367
Query: 517 ------GSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 570
G + T A + I+ + G +P G++ +
Sbjct: 368 TMKIKPGYM---------GTAASCYDVQIIDDKGNVLPPGT--EGDIGIR---------- 406
Query: 571 LNANHYDVYFSG---MPSRNGQILRRH----GDVFERTSGGYYRAHGRADDTMNLGGIKV 623
+ FSG P + +R GD + GY++ GRADD +N G ++
Sbjct: 407 VKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRI 466
Query: 624 SSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQLTIV---VVFKDSNYTPPDLNQLRM 678
E+E NA+ + V+ETA I PD P + +V VV + D QL
Sbjct: 467 GPSEVE---NALMEHPAVVETAVISS--PD--PVRGEVVKAFVVLAS-QFLSHDPEQLTK 518
Query: 679 SFNSAVQKKLNPLFKVSHVVP-----LPSLPRTATNKVMRRVLRKQLAQLDQNSK 728
V+ P + P + +LP+T T K+ R LR + ++ ++
Sbjct: 519 ELQQHVKSVTAP-----YKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMSGKAR 568
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 6e-47
Identities = 120/569 (21%), Positives = 204/569 (35%), Gaps = 75/569 (13%)
Query: 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA 229
P A N A +N R+ S T EL A AL
Sbjct: 17 EAPPALFNFAAYLFRLNETRA-GKTAYIDDT--------GSTTYGELEERARRFASALRT 67
Query: 230 LGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQ 289
LG+ I + M V V +L + AG + V + L S A+A+
Sbjct: 68 LGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIAS 127
Query: 290 DLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEF 349
+ + ++ +++ + R+ + E +
Sbjct: 128 GAL------VQNVTQALESAEHDGCQLIVSQP------RESEPRLAPLFEELIDAAAPAA 175
Query: 350 AAVEQPVE--AFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIVAWPT 405
A + AF L+SSG+TG+PK T+A + A+ + + I + D+V
Sbjct: 176 KAAATGCDDIAF--WLYSSGSTGKPKGTVHTHANLY-WTAELYAKPILGIAENDVVFSAA 232
Query: 406 NLGWMMGPW-LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN 464
L + G + L GA+ L P + + + T+ VP++ +
Sbjct: 233 KLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP 292
Query: 465 CIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY-KPVIEYCGGTEIGGGFITGSLLQAQ 523
+ +IR S GEA + A + +++ G TE+ F++ +
Sbjct: 293 NLPARADVAIRICTSAGEALPREIGER--FTAHFGCEILDGIGSTEMLHIFLSNRAGAVE 350
Query: 524 SLAAFSTPAMGCKLFILGNDGCPIPQNVPG-MGELALS-PLIF-GASSTLLNANHYDVYF 580
P G ++ + G +P G +G+L + P Y+
Sbjct: 351 YGTT-GRPVPGYEIELRDEAGHAVP---DGEVGDLYIKGPSAAVM-------------YW 393
Query: 581 SGMPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 636
++ R GD + R G Y GR+DD + + G VS VE+E + D
Sbjct: 394 -NNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHD 452
Query: 637 SNVLETAAIGVPPPDGGPEQLTIV---VVFKDSNYTPPDL--NQLRMSFNSAVQKKLNPL 691
+ VLE A +GV VV K + P ++ +L+ +F V+ +L P
Sbjct: 453 A-VLEAAVVGVDHGGLV-----KTRAFVVLKR-EFAPSEILAEELK-AF---VKDRLAP- 500
Query: 692 FKV-SHVVPLPSLPRTATNKVMRRVLRKQ 719
K +V + LP+TAT K+ R LR+Q
Sbjct: 501 HKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 3e-45
Identities = 172/661 (26%), Positives = 268/661 (40%), Gaps = 138/661 (20%)
Query: 124 EFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCL 183
+ S+++P+ +W + + P Q + N N +W +N A NCL
Sbjct: 29 KQSINDPDTFWGEQGKILD--WITPYQKVK----NTSFAPGNVSIKWYEDGTLNLAANCL 82
Query: 184 SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMP 243
+ + + D I W EGD K ++ +EL +V A L LG+ KG +AI MP
Sbjct: 83 DRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMP 140
Query: 244 MNVNSVVIYLA---------IVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIR 294
M + V LA ++ G+ ++A + S ++ + T D +R
Sbjct: 141 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAG---------CIIDSSSRLVITADEGVR 191
Query: 295 GDKSIPLYSRVIDAQAPLA-------IVIPAKGSSFSMKLRDG-DISWLDFLERVRKLKE 346
+SIPL V DA IV+ GS + +G D+ W D +E+ +
Sbjct: 192 AGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ--EGRDLWWRDLIEKASPEHQ 249
Query: 347 NEFAAVEQPVEAFTNILFSSGTTGEPKAIP--------WTNATPFKAAADA------WCH 392
E E P+ F IL++SG+TG+PK + + T FK D WC
Sbjct: 250 PEAMNAEDPL--F--ILYTSGSTGKPKGVLHTTGGYLVYAATT-FKYVFDYHPGDIYWC- 303
Query: 393 MDIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVT 448
AD+ GW+ G +L+Y L GA+ ++ G P A+ V +V
Sbjct: 304 ----TADV-------GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352
Query: 449 MLGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 506
+L P+ +R + I+G D SS+R GS GE N + + W Y I G
Sbjct: 353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEW------YWKKI---G 403
Query: 507 G-----------TEIGGGFIT----------GSLLQAQSLAAFSTPAMGCKLFILGNDGC 545
TE GG IT GS + P G + ++ N+G
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA---------TRPFFGVQPALVDNEGH 454
Query: 546 PIPQNVPGMGELALS---PLIFGASSTLLNANH---YDVYFSGMPSRNGQILRRHGDVFE 599
P G L ++ P G + TL +H YFS GD
Sbjct: 455 PQEGATEGN--LVITDSWP---GQARTLFG-DHERFEQTYFSTFK---NMYFS--GDGAR 503
Query: 600 RTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQL 657
R GYY GR DD +N+ G ++ + EIE +A+ ++ + E A +G+P G + +
Sbjct: 504 RDEDGYYWITGRVDDVLNVSGHRLGTAEIE---SALVAHPKIAEAAVVGIPHAIKG-QAI 559
Query: 658 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717
V P +L + V+K++ PL + SLP+T + K+MRR+LR
Sbjct: 560 YAYVTLNHG-EEPSP--ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Query: 718 K 718
K
Sbjct: 617 K 617
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 1e-42
Identities = 159/678 (23%), Positives = 261/678 (38%), Gaps = 133/678 (19%)
Query: 113 KDPISSFSNFQEF---SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQ 169
+ ++Q S+ +P ++ + + P + +P S
Sbjct: 17 RGSHMGLQDYQRLHKESIEDPAKFFGSKATQFLNWSK-PFDKVFIPDPK-TGRPSFQNNA 74
Query: 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYAL-N 228
W +N NC+ ++ ++ + I + EGD S+T KEL EV VA L
Sbjct: 75 WFLNGQLNACYNCVDRHALKTPNKKAIIF--EGDEPGQGYSITYKELLEEVCQVAQVLTY 132
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLA---------IVLAGYIVVSIADSFASLEISARLR 279
++G+ KG +A+ MPM +++ LA +V AG+ S+ D R+
Sbjct: 133 SMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRD---------RIN 183
Query: 280 ISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLA-----IVIPAKGSSFSMKLRDG-DIS 333
+K + T D RG K I V DA +V + S+ D+
Sbjct: 184 DGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP-SVAFHAPRDLD 242
Query: 334 WLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIP--------WTNATPFKA 385
W ++ + E P+ F +L++SG+TG PK + T +
Sbjct: 243 WATEKKKYKTYYPCTPVDSEDPL--F--LLYTSGSTGAPKGVQHSTAGYLLGALLT-MRY 297
Query: 386 AADA------WCHMDIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPLGSGF 438
D + DI GW+ G ++VY LL G + ++ G+P +
Sbjct: 298 TFDTHQEDVFFT-----AGDI-------GWITGHTYVVYGPLLYGCATLVFEGTPAYPNY 345
Query: 439 AKF---VQDAKVTMLGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 493
+++ + + KVT V P+ +R K + I+ + S+RC GS GE + + W
Sbjct: 346 SRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEW-- 403
Query: 494 GRALYKPVIEYCGG-----------TEIGGGFITGSLLQAQSLAAFSTP-----AM---- 533
Y I G TE G +T LA TP A
Sbjct: 404 ----YSEKI---GKNEIPIVDTYWQTESGSHLVTP-------LAGGVTPMKPGSASFPFF 449
Query: 534 GCKLFIL-GNDGCPIPQNVPGMGELALS---PLIFGASSTLLNANH---YDVYFSGMPSR 586
G +L N G + + G LA+ P + T+ NH D Y + P
Sbjct: 450 GIDAVVLDPNTGEELNTS-HAEGVLAVKAAWP---SFARTIWK-NHDRYLDTYLNPYP-- 502
Query: 587 NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAA 644
G GD + GY GR DD +N+ G ++S+ EIE A+ + V E A
Sbjct: 503 -GYYFT--GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE---AAIIEDPIVAECAV 556
Query: 645 IGVPPPDGGPEQLTIVVVFKD----SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPL 700
+G G + + VV K+ S T +L ++ V+K + P ++ +
Sbjct: 557 VGFNDDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILV 615
Query: 701 PSLPRTATNKVMRRVLRK 718
LP+T + K+MRR+LRK
Sbjct: 616 DDLPKTRSGKIMRRILRK 633
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 3e-39
Identities = 119/582 (20%), Positives = 203/582 (34%), Gaps = 84/582 (14%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+ L N A + + V ++ S + + + WCD+ G K T K+L+ A
Sbjct: 48 KILVPENFNFAYDVVDVYARDSPEKLAMIWCDD-YGN--EKIFTFKDLKYYSDKAANFFV 104
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
G+ KG + + + + L + G I V + +I R+ + K I
Sbjct: 105 KHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVC 164
Query: 289 QDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENE 348
D +D IP K + + +G I + LE + E
Sbjct: 165 IA----EDDVPE----QVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERP 216
Query: 349 FAAVEQPVE--AFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAW-PT 405
V E + FSSGT G PK + N P A ++ + +
Sbjct: 217 TGEVSTKNEDICL--VYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLH-YTVA 273
Query: 406 NLGWMMGPW-LVYASLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKST 463
+ GW W +Y + G ++ +Y+ + VT P+I R
Sbjct: 274 DSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE 333
Query: 464 NCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQ 523
+ + Y++S+++ GE N + + + ++E G TE +
Sbjct: 334 D-LSHYNFSTLKYAVVAGEPLNPEVFNRFL-EFTGIKLMEGFGQTETV--------VTIA 383
Query: 524 SLAAFST-------PAMGCKLFILGNDGCPIPQNVPGMGELAL-----SPLIFGASSTLL 571
+ P G K+ ++ DG GE+ + P+
Sbjct: 384 TFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGE--EGEIVINTMEGKPVGL------- 434
Query: 572 NANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVE 627
+ Y P R + GD+ GY GRADD + G KV E
Sbjct: 435 ----FVHYG-KDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFE 489
Query: 628 IERICNAVDSN--VLETAAIGVPPPDGGPEQLTIV---VVFKDSNYTPPDLNQLRMSFNS 682
+E +A+ + VLE A GV PD P + ++ +V +YTP D L+
Sbjct: 490 VE---SALIQHPAVLECAITGV--PD--PVRGQVIKATIVLTK-DYTPSD--SLKNELQD 539
Query: 683 AVQKKLNPLFKVSHVVP-----LPSLPRTATNKVMRRVLRKQ 719
V+ P + P +P LP+T + K+ R +R +
Sbjct: 540 HVKNVTAP-----YKYPRIIEFVPELPKTISGKIRRVEIRDK 576
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 9e-33
Identities = 102/550 (18%), Positives = 176/550 (32%), Gaps = 98/550 (17%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSI 265
+ ++ +EL +A +L G+ G + + N + + A++ G V
Sbjct: 49 RQLSYRELNQAADNLACSLRRQGIKPGETALVQLG---NVAELYITFFALLKLGVAPVLA 105
Query: 266 ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSM 325
S E++A + + + + + + +V
Sbjct: 106 LFSHQRSELNAYASQIEPALLIADRQH-ALFSGDDFLNTFVTEHSSIRVVQLLND----- 159
Query: 326 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT------N 379
G+ + D + +F A P + S GTTG PK IP T +
Sbjct: 160 ---SGEHNLQDAINHPA----EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYS 212
Query: 380 ATPFKAAADAWCHMDIRKADIVAWPT----NLGWMMGPWLVYASLLNGASIALYNG-SPL 434
+ + + N L G ++ L S
Sbjct: 213 VR---RSVEIC---QFTQQTRYLCAIPAAHNYAMSSP--GSLGVFLAGGTVVLAADPSA- 263
Query: 435 GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCF---GSTGEASNVDEY 489
F ++ +V + +VP V W +S++ G+ A+
Sbjct: 264 TLCFP-LIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARI 322
Query: 490 LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLF------ILGND 543
+G L + G E G + + L + T G + + +
Sbjct: 323 PAEIGCQL---QQVF-GMAE---GLVNYTRLDDSAEKIIHT--QGYPMCPDDEVWVADAE 373
Query: 544 GCPIPQNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRR----H-GD 596
G P+PQ G L P F G Y+ P N GD
Sbjct: 374 GNPLPQGEV--GRLMTRGPYTFRG-------------YY-KSPQHNASAFDANGFYCSGD 417
Query: 597 VFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVLETAAIGVPPPDGGP 654
+ GY GR D +N GG K+++ EIE N + V+ A + + G
Sbjct: 418 LISIDPEGYITVQGREKDQINRGGEKIAAEEIE---NLLLRHPAVIYAALVSMEDELMG- 473
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMR 713
E+ +V K+ P Q+R F ++ + FK+ V + SLP TA KV +
Sbjct: 474 EKSCAYLVVKE----PLRAVQVR-RF--LREQGIAE-FKLPDRVECVDSLPLTAVGKVDK 525
Query: 714 RVLRKQLAQL 723
+ LR+ LA
Sbjct: 526 KQLRQWLASR 535
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 6e-32
Identities = 100/565 (17%), Positives = 185/565 (32%), Gaps = 107/565 (18%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
++T E +A A+ GL+ I + ++ + L + G V D
Sbjct: 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 108
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA----PLAIVIPAKGSSFS 324
+ E+ + IS+ +F ++++ Q I+I S
Sbjct: 109 YNERELLNSMNISQPTVVFVSK---------KGLQKILNVQKKLPIIQKIII-----MDS 154
Query: 325 MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTN---ILFSSGTTGEPKAIPWTNA- 380
G S F+ NE+ V + + I+ SSG+TG PK + +
Sbjct: 155 KTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRT 214
Query: 381 --TPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGF 438
F A D I + G + L+ G + L
Sbjct: 215 ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL---------M 265
Query: 439 AKF--------VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYL 490
+F +QD K+ +VP++ + + ID YD S++ S G A
Sbjct: 266 YRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS-GGAP------ 318
Query: 491 WLMGRALYKPVIEYCGGTEIGGGF--------ITGSLLQAQSLAAFSTPAMGCKLFIL-G 541
+ + + + V + I G+ I + A + ++
Sbjct: 319 --LSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDL 376
Query: 542 NDGCPIPQNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRR----H- 594
+ G + N GEL + P+I G Y P ++ + H
Sbjct: 377 DTGKTLGVNQR--GELCVRGPMIMSG-------------YV-NNPEATNALIDKDGWLHS 420
Query: 595 GDVFERTSGGYYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648
GD+ Y+ R + G +V+ E+E I + + + G+P
Sbjct: 421 GDI------AYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPN-IFDAGVAGLP 473
Query: 649 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV--SHVVPLPSLPRT 706
D G +VV+ T ++ + + V ++ K VV + +P+
Sbjct: 474 DDDAGELPAAVVVLEHGKTMTEKEI----VDY---VASQVTT-AKKLRGGVVFVDEVPKG 525
Query: 707 ATNKVMRRVLRKQLAQLDQN--SKL 729
T K+ R +R+ L + + SKL
Sbjct: 526 LTGKLDARKIREILIKAKKGGKSKL 550
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-31
Identities = 105/540 (19%), Positives = 180/540 (33%), Gaps = 83/540 (15%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSI 265
+ +EL +A LG+ + + + +P N + A+ G + V
Sbjct: 49 THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP---NIKEFFEVIFALFRLGALPVFA 105
Query: 266 ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSM 325
S S EI+ ++A A D G L +V L +I A +
Sbjct: 106 LPSHRSSEITYFCEFAEAAAYIIPDAY-SGFDYRSLARQVQSKLPTLKNIIVAGEA---- 160
Query: 326 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKA 385
+ + D KL E + + V + S G+TG K IP T+ +
Sbjct: 161 ---EEFLPLEDLHTEPVKLPEVKSSDV-------AFLQLSGGSTGLSKLIPRTHDDYIYS 210
Query: 386 AADAWCHMDIRKADIVAWPT----NLGWMMGPWLVYASLLNGASIALYNG-SPLGSGFAK 440
+ + + + N L L G + L SP F
Sbjct: 211 LKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL--GVLYAGGRVVLSPSPSPD-DAFP- 266
Query: 441 FVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF---GSTGEASNVDEYLWLMGRAL 497
++ KVT+ +VP + W D SS++ G+ A + G L
Sbjct: 267 LIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTL 326
Query: 498 YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST------PAMGCKLFILGNDGCPIPQNV 551
+ G E G + + L +T P + + + +
Sbjct: 327 ---QQVF-GMAE---GLVNYTRLDDPEEIIVNTQGKPMSPYDESR--VWDDHDRDVKPGE 377
Query: 552 PGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRR----H-GDVFERTSGG 604
G L P G Y+ N GD+ T G
Sbjct: 378 T--GHLLTRGPYTIRG-------------YY-KAEEHNAASFTEDGFYRTGDIVRLTRDG 421
Query: 605 YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFK 664
Y GRA D +N GG KV++ E+E A + V + A + +P G E+ + ++ +
Sbjct: 422 YIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA-VHDAAMVSMPDQFLG-ERSCVFIIPR 479
Query: 665 DSNYTPPDLNQ-LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQ 722
D +L LR ++ L +K+ V + S P+T KV ++ LR+ +++
Sbjct: 480 DEAPKAAELKAFLR-------ERGLAA-YKIPDRVEFVESFPQTGVGKVSKKALREAISE 531
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 4e-31
Identities = 108/551 (19%), Positives = 184/551 (33%), Gaps = 101/551 (18%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSI 265
+ ++ EL +A L GL KG + +P N +++ A++ AG +V++
Sbjct: 54 RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLP---NVAEFYIVFFALLKAGVVVLNA 110
Query: 266 ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSM 325
S E++A ++ + K + + + D I++
Sbjct: 111 LYSHRQYELNAFIKQIQPKLLIGSRQH-EVFSNNQFIDSLHDVNLSPEIILMLNHQ---- 165
Query: 326 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT------N 379
D LD++E E P + S G+TG PK IP T +
Sbjct: 166 ---ATDFGLLDWIETPA---ETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYS 219
Query: 380 ATPFKAAADAWCHMDIRKADIVAWPT----NLGWMMGPWLVYASLLNGASIALYNGSPLG 435
A+A+ + + N L G + + +P
Sbjct: 220 VR---ASAEI---CGLNSNTRLLCALPAPHNFMLSSP--GALGVLHAGGCVVM---APNP 268
Query: 436 SGFAKF--VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 493
F +Q +V M +VPS V W S++ G AS + +
Sbjct: 269 EPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGG-ASFPESLARQV 327
Query: 494 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST------PAMGCKLFILGNDGCPI 547
L + + G E G + + L F+T K I+ +
Sbjct: 328 PEVLNCKLQQVFGMAE---GLVNYTRLDDSDEQIFTTQGRPISSDDEIK--IVDEQYREV 382
Query: 548 PQNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRR----H-GDVFER 600
P+ G LA P F G Y+ P N Q+ + GD+ +R
Sbjct: 383 PEGEI--GMLATRGPYTFCG-------------YY-QSPEHNSQVFDEDNYYYSGDLVQR 426
Query: 601 TSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVL-------ETAAIGVPPPDGG 653
T G R GR D +N GG K++S EIE ++ A + + G
Sbjct: 427 TPDGNLRVVGRIKDQINRGGEKIASEEIE--------KLILLHPEVMHAALVAIVDEQFG 478
Query: 654 PEQLTIVVVFKDSNYTPPDLNQ-LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKV 711
E+ +V ++ L + L + + +K+ + + SLP TA KV
Sbjct: 479 -EKSCAFIVSRNPELKAVVLRRHLM-------ELGIAQ-YKLPDQIKLIESLPLTAVGKV 529
Query: 712 MRRVLRKQLAQ 722
++ LR L
Sbjct: 530 DKKQLRSILNT 540
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 9e-31
Identities = 102/563 (18%), Positives = 180/563 (31%), Gaps = 107/563 (19%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ E + + AL GL IA+ + +A + G V +
Sbjct: 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA----PLAIVIPAKGSSFS 324
+ E+ L ISK +F+ +VI Q IVI S
Sbjct: 111 YTLRELVHSLGISKPTIVFSSK---------KGLDKVITVQKTVTTIKTIVIL-----DS 156
Query: 325 MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFT---NILFSSGTTGEPKAIPWTNA- 380
G F++R + V+ I+ SSG+TG PK + T+
Sbjct: 157 KVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHEN 216
Query: 381 --TPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGF 438
T F A D + V G + L+ G + +
Sbjct: 217 IVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVM---------L 267
Query: 439 AKF--------VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYL 490
KF +QD K T + +VP++ + ++ YD S++ S G A
Sbjct: 268 TKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIAS-GGAP------ 320
Query: 491 WLMGRALYKPVIEYCGGTEIGGGF--------ITGSLLQAQSLAAFSTPAMGCKLFIL-G 541
+ + + + V + G+ I + A K ++
Sbjct: 321 --LSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDL 378
Query: 542 NDGCPIPQNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRR----H- 594
+ + N GE+ + P++ G Y P +++ H
Sbjct: 379 DTKKSLGPNRR--GEVCVKGPMLMKG-------------YV-NNPEATKELIDEEGWLHT 422
Query: 595 GDVFERTSGGYYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648
GD+ GYY R + G +V E+E + S + + GVP
Sbjct: 423 GDI------GYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPS-IFDAGVAGVP 475
Query: 649 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV--SHVVPLPSLPRT 706
P G +VV+ N T ++ M + V +++ K V + +P+
Sbjct: 476 DPVAGELPGAVVVLESGKNMTEKEV----MDY---VASQVSN-AKRLRGGVRFVDEVPKG 527
Query: 707 ATNKVMRRVLRKQLAQLDQNSKL 729
T K+ R +R+ L + +K+
Sbjct: 528 LTGKIDGRAIREILKK--PVAKM 548
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-30
Identities = 115/537 (21%), Positives = 192/537 (35%), Gaps = 88/537 (16%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
MT ++ A A L ALG+ KG +A+ MP +V ++ G + V I
Sbjct: 42 VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 101
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
A+ E+S L S +K + G S P+ + P V
Sbjct: 102 LAAPEVSFILSDSGSKVVIY------GAPSAPVIDAIRAQADPPGTVTDW---------- 145
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD 388
G S + L + AVE + I+++SGTTG PK + T+ + AA+
Sbjct: 146 IGADSLAERLRS----AAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASS 201
Query: 389 AWCHMDIRKADIVAWPT------NLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFV 442
+D+R D + P L ++ + G ++ + +
Sbjct: 202 WASTIDVRYRDRLLLPLPMFHVAALTTVIFS------AMRGVTLISM-PQFDATKVWSLI 254
Query: 443 QDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--- 499
+ +V + G VP+I+ + D R F + G M AL K
Sbjct: 255 VEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAP---------MPEALIKIYA 305
Query: 500 ----PVIEYCGGTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGM 554
V++ TE GG + S + + M + + G+DG G
Sbjct: 306 AKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIRE---HGE 362
Query: 555 GELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRA 608
GE+ + S ++ Y+ P R GD+ E GY
Sbjct: 363 GEVVIKSDILLKE-------------YW-NRPEATRDAFDNGWFRTGDIGEIDDEGYLYI 408
Query: 609 HGRADDTMNLGGIKVSSVEIERICNAVDS--NVLETAAIGVPPPDGGPEQLTIVVVFKDS 666
R D + GG V EIE + + V E A IG+P G E +VV +
Sbjct: 409 KDRLKDMIISGGENVYPAEIE---SVIIGVPGVSEVAVIGLPDEKWG-EIAAAIVVADQN 464
Query: 667 NYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQ 722
+ + + + +L +K+ V+ ++PR T K+++ VLR+Q +
Sbjct: 465 EVSEQQI----VEY---CGTRLAR-YKLPKKVIFAEAIPRNPTGKILKTVLREQYSA 513
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 3e-30
Identities = 110/536 (20%), Positives = 184/536 (34%), Gaps = 82/536 (15%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
++ EL A VA L A GL G +A +V ++V+YLA V AG + + + +
Sbjct: 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTA 86
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
+ E+ + ++ K + + + +
Sbjct: 87 YTLHELDYFITDAEPKIVVC------DPSKRDGIAAIAAKVGATVETLGP---------- 130
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD 388
DG S D FA +++ + IL++SGTTG K ++ +
Sbjct: 131 DGRGSLTDAAAG----ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLT 186
Query: 389 AWCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQD 444
+ D++ + G + +L S+ KF D
Sbjct: 187 LVDYWRFTPDDVLIHALPIYHTHGLFVA---SNVTLFARGSMIF---------LPKFDPD 234
Query: 445 A------KVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 498
+ T+L VP+ + + +R F S G A + +
Sbjct: 235 KILDLMARATVLMGVPTFYTRLLQSPRLTKETTGHMRLFIS-GSAPLLADTHREWSAKTG 293
Query: 499 KPVIEYCGGTEIGGGFITGSLLQAQSLAAFS--TPAMGCKLFILGND-GCPIPQNVPGMG 555
V+E G TE T + + + G + + G +P+ G
Sbjct: 294 HAVLERYGMTETNM--NTSNPYDGDRVPG-AVGPALPGVSARVTDPETGKELPRGDI--G 348
Query: 556 ELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILR-----RHGDVFERTSGGYYRA 608
+ + P +F G Y+ MP + R GD+ + GY
Sbjct: 349 MIEVKGPNVFKG-------------YW-RMPEKTKSEFRDDGFFITGDLGKIDERGYVHI 394
Query: 609 HGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNY 668
GR D + GG V EIE +A+ V+E+A IGVP D G E +T VVV
Sbjct: 395 LGRGKDLVITGGFNVYPKEIESEIDAMPG-VVESAVIGVPHADFG-EGVTAVVVRDKG-- 450
Query: 669 TPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQL 723
D Q+ + +L FK+ V+ + LPR KV + VLR+ +
Sbjct: 451 ATIDEAQVL----HGLDGQLAK-FKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-29
Identities = 87/526 (16%), Positives = 169/526 (32%), Gaps = 66/526 (12%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+T ++ A +A L G+ G +AI + + A+ L G I++ +
Sbjct: 30 VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYR 89
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
+ EI+ L + G + + V+ + + +
Sbjct: 90 LNADEIAFVLGDGAPSVVVA------GTDYRDIVAGVLPSLGGVKKAYA---------IG 134
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD 388
DG + F + + F+A E I+ ++ G P+ + A +
Sbjct: 135 DGSGPFAPFKDL---ASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSS 191
Query: 389 AWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVT 448
+ +AD+ L + G L+ G + + + A+ ++ KVT
Sbjct: 192 LVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA-AKFDPAQAARDIEAHKVT 250
Query: 449 MLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK-PVIEYCGG 507
++ ++ + +S+R + E + G
Sbjct: 251 VMAEFAPML--GNILDQAAPAQLASLRAVTG-LDTP---ETIERFEATCPNATFWATFGQ 304
Query: 508 TEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIF-G 565
+E G ++ + P + ++ + P+P GE+ L P +F G
Sbjct: 305 SETSG--LSTFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKG 360
Query: 566 ASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRAD--DTMNLG 619
Y+ + R GD+ + GY GRA + + G
Sbjct: 361 -------------YW-NNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTG 406
Query: 620 GIKVSSVEIERICNAVDS--NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLR 677
G V E+E A+ + + IGVP P E + V V K + L
Sbjct: 407 GENVYPAEVE---GALKQHPAIADAVVIGVPDPQWS-EAIKAVCVCKPG--ESIAADALA 460
Query: 678 MSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQ 722
V + +K HVV + +LP+ A + R ++ Q
Sbjct: 461 ----EFVASLIAR-YKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQ 501
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 4e-29
Identities = 107/581 (18%), Positives = 198/581 (34%), Gaps = 96/581 (16%)
Query: 183 LSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDM 242
+ +++ + I + +SM E+ +A ++ G+ KG + + +
Sbjct: 25 IDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCI 84
Query: 243 PMNVNS---VVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSI 299
P NS V+ A+ V I + S E+ L S+A +
Sbjct: 85 P---NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHS--------- 132
Query: 300 PLYSRVIDAQAPLA----IVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQP 355
LY V+ + +S S + G + E V+ E + A
Sbjct: 133 MLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGS----EDFENVKVNPEEDVAL---- 184
Query: 356 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL 415
I ++ GTTG PK + T+ A + D + +G M P
Sbjct: 185 ------IPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTI-----VGCM--PMF 231
Query: 416 -VYASLLNGASIALYNGSPL-------GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-- 465
++ + G+ A+ ++ K T VP + +T
Sbjct: 232 HSAE--FGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESS 289
Query: 466 IDGYDWSSIRCFGSTGEA---SNVDEYLWLMGRALYKPVIEYCGG---TEIGGGFITGSL 519
YDWS ++ F + + V++ L L P + + TE T
Sbjct: 290 NKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP 349
Query: 520 LQAQSLAAFSTPAMGCKLFIL-GNDGCPIPQNVPGMGELALS-PLIF-G-------ASST 569
L+ P +L ++ DG + GE+ + P IF G
Sbjct: 350 LRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQEC 407
Query: 570 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 629
+F R GDV G+ R + + G ++ E+E
Sbjct: 408 WWYDEKGRKFF------------RTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELE 455
Query: 630 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD---SNYTPPDLNQLRMSFNSAVQK 686
+ ++ V++ A IG P + G E +V K D+ + + V++
Sbjct: 456 ALLMKHEA-VMDVAVIGKPDEEAG-EVPKAFIVLKPEYRGKVDEEDI----IEW---VRE 506
Query: 687 KLNPLFKVSHVVP-LPSLPRTATNKVMRRVLRKQLAQLDQN 726
+++ +K V + LPRTA+ K++RR+LR++ A+ +
Sbjct: 507 RISG-YKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHH 546
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 9e-29
Identities = 105/556 (18%), Positives = 207/556 (37%), Gaps = 108/556 (19%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
T ++ VA LN +G+ +G I + +P + V+ +L G I+ +
Sbjct: 48 DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPF 107
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
E++ + S+AK + TQ Y +V D + + S+
Sbjct: 108 STPAELAKHAKASRAKLLITQA---------CYYEKVKDFARESDVKVMCVDSA-----P 153
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT--N--ATPFK 384
DG + + + + ENE V+ + + +SSGTTG PK + T + +
Sbjct: 154 DGCLHFSELTQA----DENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQ 209
Query: 385 AAADAWCHMDIRKADIVAWPTNLGWMMGPWL-VYA--SLLNGASIALYNGSPL------- 434
++ D++ L + P +YA S++ L G+P+
Sbjct: 210 QVDGDNPNLYFHSEDVI-----LCVL--PMFHIYALNSIMLC---GLRVGAPILIMPKFE 259
Query: 435 GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494
++ KV++ VVP ++ + + +D +D SS+R S G A +G
Sbjct: 260 IGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKS-GGAP--------LG 310
Query: 495 RALYKPVIEYCGGTEIGGGF--------ITGSLLQAQSLAAFS-----TPAMGCKLFIL- 540
+ L V +G G+ + L A+ T ++ I+
Sbjct: 311 KELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD 370
Query: 541 GNDGCPIPQNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRRH---- 594
G +P+N P GE+ + I G Y P + + +
Sbjct: 371 PETGASLPRNQP--GEICIRGDQIMKG-------------YL-NDPEATSRTIDKEGWLH 414
Query: 595 -GDVFERTSGGYYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 647
GD+ GY R + + G +V+ E+E + A + + A +G+
Sbjct: 415 TGDI------GYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPE-ISDAAVVGL 467
Query: 648 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTA 707
D G + VV + S T ++ + + K++ ++ V + ++P+
Sbjct: 468 KDEDAGEVPVAFVVKSEKSQATEDEI----KQY---ISKQVIFYKRIKRVFFIEAIPKAP 520
Query: 708 TNKVMRRVLRKQLAQL 723
+ K++R+ L+++LA +
Sbjct: 521 SGKILRKNLKEKLAGI 536
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-26
Identities = 105/563 (18%), Positives = 200/563 (35%), Gaps = 104/563 (18%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
T ++ +A + LG+++ + + +P V+ +LA G +
Sbjct: 87 HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPF 146
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
F EI+ + + S K I T+ ++ Q +VI + S+ +
Sbjct: 147 FTPAEIAKQAKASNTKLIITEA---------RYVDKIKPLQNDDGVVIVCIDDNESVPIP 197
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT--N--ATPFK 384
+G + + + + + E +VE + + +SSGTTG PK + T + +
Sbjct: 198 EGCLRFTELTQSTTEASE-VIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 256
Query: 385 AAADAWCHMDIRKADIVAWPTNLGWMMGPWL-VYA--SLLNGASIALYNGSPL------- 434
++ D++ L + P +YA S++ L G+ +
Sbjct: 257 QVDGENPNLYFHSDDVI-----LCVL--PMFHIYALNSIMLC---GLRVGAAILIMPKFE 306
Query: 435 GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494
+ + +Q KVT+ +VP IV ++ + YD SSIR S G A +G
Sbjct: 307 INLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKS-GAAP--------LG 357
Query: 495 RALYKPVIE----------YCGGTEIGGGFITGSLLQAQSLAAFS------TPAMGCKLF 538
+ L V Y G TE G + S K+
Sbjct: 358 KELEDAVNAKFPNAKLGQGY-GMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKI- 415
Query: 539 ILGNDGCPIPQNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRRH-- 594
+ + G + +N P GE+ + I G Y P+ + + +
Sbjct: 416 VDPDTGDSLSRNQP--GEICIRGHQIMKG-------------YL-NNPAATAETIDKDGW 459
Query: 595 ---GDVFERTSGGYYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAI 645
GD+ G R + + G +V+ E+E + + + A +
Sbjct: 460 LHTGDI------GLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPD-ITDVAVV 512
Query: 646 GVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPR 705
+ G + VV KDS + D+ F V K++ +++ V S+P+
Sbjct: 513 AMKEEAAGEVPVAFVVKSKDSELSEDDV----KQF---VSKQVVFYKRINKVFFTESIPK 565
Query: 706 TATNKVMRRVLRKQLAQLDQNSK 728
+ K++R+ LR +LA +
Sbjct: 566 APSGKILRKDLRAKLANGLGSGM 588
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 121/534 (22%), Positives = 183/534 (34%), Gaps = 100/534 (18%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+S+T EL A A + +A+ + + V +A +LAG V +
Sbjct: 47 RSLTYAELAAAAGATA-----GRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPK 101
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
E++ L S + D +P + A + + + A+G+
Sbjct: 102 SGDKELAHILSDSAPSLVLAPP-----DAELP---PALGALERVDVDVRARGAVPEDGAD 153
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIP------WTNATP 382
DGD + ++++SGTTG PK T
Sbjct: 154 DGDPAL---------------------------VVYTSGTTGPPKGAVIPRRALATTLD- 185
Query: 383 FKAAADAWCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYNGSPLGSGF 438
A ADAW D++ L G ++G + L G S+ G G
Sbjct: 186 --ALADAW---QWTGEDVLVQGLPLFHVHGLVLG---ILGPLRRGGSVRHL-GRFSTEGA 236
Query: 439 AKFVQDAKVTMLGVVPSI---VRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495
A+ + D TML VP++ + + + R S G A+ +
Sbjct: 237 ARELND-GATMLFGVPTMYHRIAETLPADPELAKALAGARLLVS-GSAALPVHDHERIAA 294
Query: 496 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFS-TPAMGCKLFILGNDGCPIPQNVPG- 553
A + VIE G TE T + A P G +L ++ DG PI
Sbjct: 295 ATGRRVIERYGMTETLM--NTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGES 352
Query: 554 MGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRRH-----GDVFERTSGGYY 606
+GE+ + P +F Y P GD+ R GY
Sbjct: 353 VGEIQVRGPNLFTE-------------YL-NRPDATAAAFTEDGFFRTGDMAVRDPDGYV 398
Query: 607 RAHGRAD-DTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 665
R GR D + GG K+ + EIE V E A G P PD G E++ +V D
Sbjct: 399 RIVGRKATDLIKSGGYKIGAGEIENALLEHPE-VREAAVTGEPDPDLG-ERIVAWIVPAD 456
Query: 666 SNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRK 718
PP L L V +L P K V L ++PR K+M+R L +
Sbjct: 457 PA-APPALGTLA----DHVAARLAP-HKRPRVVRYLDAVPRNDMGKIMKRALNR 504
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 3e-21
Identities = 109/542 (20%), Positives = 177/542 (32%), Gaps = 99/542 (18%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSIAD 267
+T ELRA V VA L+A GL +A+ P NS V+ LA+ G + +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAP---NSADVVIAILALHRLGAVPALLNP 86
Query: 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKL 327
S E++ ++ + A + + + + I+ L
Sbjct: 87 RLKSAELAELIKRGEMTAAVI-------AVGRQVADAIFQSGSGARIIF----------L 129
Query: 328 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK-------AIPWTNA 380
D + ++ I ++SGTTG PK A
Sbjct: 130 GDLVRDGEPYSY------GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAES-RV 182
Query: 381 TPFKAAADAWCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYNG-SPLG 435
+ + ++V L G+ + A+L + + P
Sbjct: 183 L----FMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV---LVAALALDGTYVVVEEFRP-- 233
Query: 436 SGFAKFVQDAKVTMLGVVPSIVRTWKS-----TNCIDGYDWSSIRCFGSTGEASNVDEYL 490
+ VQ +VT L P+ + + S+R + A+ D L
Sbjct: 234 VDALQLVQQEQVTSLFATPTH---LDALAAAAAHAGSSLKLDSLRH-VTFAGATMPDAVL 289
Query: 491 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQN 550
+ + L + G TE + + Q + P ++ I+ G
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMN---SLYMRQPK-TGTEMAPGFFSEVRIVRIGGGVDEIV 345
Query: 551 VPG-MGELAL--SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTS 602
G GEL + S F G Y P + L+ R DV T
Sbjct: 346 ANGEEGELIVAASDSAFVG-------------YL-NQPQATAEKLQDGWYRTSDVAVWTP 391
Query: 603 GGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVLETAAIGVPPPDGGPEQLTIV 660
G R GR DD + GG + EIE + + V E IG+ G + +T
Sbjct: 392 EGTVRILGRVDDMIISGGENIHPSEIE---RVLGTAPGVTEVVVIGLADQRWG-QSVTAC 447
Query: 661 VVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQ 719
VV + + L +F +L FK L LP+ A NKV+RR L +Q
Sbjct: 448 VVPRLG--ETLSADALD-TF--CRSSELAD-FKRPKRYFILDQLPKNALNKVLRRQLVQQ 501
Query: 720 LA 721
++
Sbjct: 502 VS 503
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 2e-12
Identities = 42/276 (15%), Positives = 97/276 (35%), Gaps = 21/276 (7%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+S T + L E L+A L + S + + + ++ S+++ A LA + I
Sbjct: 25 ESYTYQNLYCEASLLA---KRLKAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTR 81
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
E++ ++R + IF + I + A + +
Sbjct: 82 LTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNT------- 134
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD 388
G V K + ++ +I+F+SGTTG KA+P T + +A
Sbjct: 135 MGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIG 194
Query: 389 AWCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYNG-SPLGSGFAKFVQ 443
+ + + G + + +++ G ++ + + + ++
Sbjct: 195 CKESLGFDRDTNWLSVLPIYHISGLSV----LLRAVIEGFTVRIVDKFNA--EQILTMIK 248
Query: 444 DAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGS 479
+ ++T + +VP + + Y+ I G+
Sbjct: 249 NERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA 284
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 3e-10
Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 16/131 (12%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVLETAAIGVPPPDG 652
GD+ E GY + R D + GG + +IE + + +G P
Sbjct: 380 GDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIE---TVAKQFPGISDAVCVGHPDDTW 436
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKV 711
G + + V + + L + K L +KV H + +LP T+T K+
Sbjct: 437 G-QVPKLYFVSESD-ISKAQLIA-------YLSKHLAK-YKVPKHFEKVDTLPYTSTGKL 486
Query: 712 MRRVLRKQLAQ 722
R L ++
Sbjct: 487 QRNKLYREGHH 497
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 610 GRADDTMNLGGIKVSSVEIERICNAVDSNVL--ETAAIGVPPPDGGPEQLTIVVVFKDSN 667
GR D + + G +IE + + + AA + + +LT++ K+
Sbjct: 455 GRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQ--EEHEYKLTVMCEVKNRF 512
Query: 668 YTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLP--SLPRTATNKVMRRVLRKQLAQ 722
+ L V + +V +V +P ++P T + K+ R RK L
Sbjct: 513 MDDVAQDNLFNEIFELVYENHQ--LEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 33/251 (13%), Positives = 72/251 (28%), Gaps = 47/251 (18%)
Query: 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVI 251
+ + ++ ++MT ++L +A L A G G + + + +
Sbjct: 26 NKKSCTFLNKE----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQA 81
Query: 252 YLAIVLAGYIVVSIA--DSFASLE-ISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDA 308
+L + AG I V I L+ + SK +
Sbjct: 82 FLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLM-------------------- 121
Query: 309 QAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGT 368
+ + + I + LE + + + + + ++SG+
Sbjct: 122 --IADHIKKFTADELNTNPKFLKIPAIA-LESIELNRSSSWQPTSIKSNDIAFLQYTSGS 178
Query: 369 TGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWM-----MGPWLVYASLLNG 423
T PK + ++ + + I+ W+ MG L+ L
Sbjct: 179 TMHPKGVMVSHHNLLDNLNKIFTSFHMNDETII-----FSWLPPHHDMG--LIGCILT-- 229
Query: 424 ASIALYNGSPL 434
+Y G
Sbjct: 230 ---PIYGGIQA 237
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 44/255 (17%), Positives = 78/255 (30%), Gaps = 46/255 (18%)
Query: 192 DDIVIRWCD-EGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVV 250
D + D E D ++T +L VA L+ G G + I P + VV
Sbjct: 39 HDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVV 97
Query: 251 IYLAIVLAGYIVVSIA--DSFASLE-ISARLRISKAKAIFTQDLIIRGDKSIPLYSRVID 307
+L + AG I V ++ + E + L S AI T S +D
Sbjct: 98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILT-------------TSSAVD 144
Query: 308 AQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSG 367
P + S ++ ++ + N + E + + ++SG
Sbjct: 145 DVVQHVARRPG----------ESPPSIIE-VDLLDLDAPNGYTFKEDEYPSTAYLQYTSG 193
Query: 368 TTGEPKAIPWTNA---TPFKAAADAWCHMDIRKADIVAWPTNLGWM-----MGPWLVYAS 419
+T P + ++ F+ + + W+ MG LV
Sbjct: 194 STRTPAGVVMSHQNVRVNFEQLMSGYFAD--TDGIPPPNSALVSWLPFYHDMG--LVIGI 249
Query: 420 LLNGASIALYNGSPL 434
+ G P
Sbjct: 250 CA-----PILGGYPA 259
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 111/586 (18%), Positives = 199/586 (33%), Gaps = 144/586 (24%)
Query: 194 IVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL 253
+V R V T E+ + L ALG+ G +A + + Y
Sbjct: 36 VVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 90
Query: 254 AIVLAGYIVVSI-----ADSFASLEISARLRISKAKAIFTQDLIIRGDKS-IPLYSRVID 307
A+ G ++ + EI+ L ++ K + D + +PL +
Sbjct: 91 AVPGMGAVLHTANPRLSPK-----EIAYILNHAEDKVLLF-------DPNLLPLVEAIRG 138
Query: 308 A--QAPLAIVIPAKGSSFSMKLRDGDISWLDFLER---VRKLKENEFAAVEQPVEAFTNI 362
+V+ K +G +++ + L ++ E +
Sbjct: 139 ELKTVQHFVVMDEKAP-------EGYLAYEEALGEEADPVRVPERAACG----------M 181
Query: 363 LFSSGTTGEPKAIPWT------NATPFKAAADAWCHMDIRKADIVAWPT-----NLGWMM 411
+++GTTG PK + ++ ++ AA + + D+V N W
Sbjct: 182 AYTTGTTGLPKGVVYSHRALVLHSL----AASLVDGTALSEKDVVLPVVPMFHVN-AW-- 234
Query: 412 GPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKS-TNCID--G 468
L YA+ L GA L + + VT VP++ W + + ++ G
Sbjct: 235 C--LPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTV---WLALADYLESTG 289
Query: 469 YDWSSIRCFGSTGEASNVDEYLWLMGRALYK-------PVIEYCGGTEIGGGFITGSLLQ 521
+ ++R G A R+L V + G TE + + ++
Sbjct: 290 HRLKTLRRLVVGGSA---------APRSLIARFERMGVEVRQGYGLTETSP-VVVQNFVK 339
Query: 522 AQSLAAFST------------PAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASS 568
+ L + S P +L + +G P+P++ +GE+ L P I G
Sbjct: 340 SH-LESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG-- 396
Query: 569 TLLNANHYDVYFSGMPSRNGQILRR----H-GDVFERTSGGYYRAHGRADDTMNLGGIK- 622
Y+ G L GD+ GY R D IK
Sbjct: 397 ----------YY-GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDL-----IKS 440
Query: 623 ----VSSVEIERICNAVDS--NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQL 676
+SSV++E NA+ V E A + +P P E+ VVV + TP +L
Sbjct: 441 GGEWISSVDLE---NALMGHPKVKEAAVVAIPHPKWQ-ERPLAVVVPRGEKPTPEEL--- 493
Query: 677 RMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLA 721
++ +++ V +PRT+ K ++R LR+Q
Sbjct: 494 NEHL---LKAGF-AKWQLPDAYVFAEEIPRTSAGKFLKRALREQYK 535
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 84/444 (18%), Positives = 142/444 (31%), Gaps = 116/444 (26%)
Query: 330 GDISWLDFLER---VRK--LKEN----EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNA 380
D+ L L + K L++N FA P E + SSGTTG+P + +T
Sbjct: 59 DDLKSLADLAKFPFSTKNDLRDNYPFGLFAV---PREQVVRVHASSGTTGKPTVVGYT-- 113
Query: 381 TPFKAAADAWCHM--------DIRKADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNG 431
D W ++ R D + G G + Y + G +
Sbjct: 114 ---ARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVV---- 166
Query: 432 SPLGSGF----AKFVQDAKVTMLGVVPS----IVRTWKSTNCIDGYDWSSIRCFGSTGEA 483
P+ G + ++D + ++ V PS ++ +D + SS++ E
Sbjct: 167 -PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQG-MDPAE-SSLKIGIFGAEP 223
Query: 484 SNVDEYLWL--MGRALYK----PVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKL 537
W + + ++ G +E+ G + A
Sbjct: 224 -------WTQALRNEVETRVGIDALDIYGLSEVMGPGV-----------ACECVETKDGP 265
Query: 538 FILG----------NDGCPIPQNVPG-MGELALSPLIFGASSTLLNANHYDVYFSGMPSR 586
I G +P G GEL T L MP
Sbjct: 266 VIWEDHFYPEIIDPVTGEVLP---DGSQGELVF---------TSLTK-------EAMP-- 304
Query: 587 NGQILR-RHGDVFE------RTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNV 639
++R R D+ R + GR+DD + + G+ V +IE I A+
Sbjct: 305 ---VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPL-- 359
Query: 640 LETAAIGVPPPDGGPEQLTIVVVFKD---SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSH 696
L DG ++L + V + ++ T + L ++ + V
Sbjct: 360 LSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGV-T 418
Query: 697 VVPLPSLPRTATNKVMRRV--LRK 718
V+ +P TAT K RRV R+
Sbjct: 419 VLAAGGIPATATGKA-RRVIDRRQ 441
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 90/446 (20%), Positives = 150/446 (33%), Gaps = 123/446 (27%)
Query: 330 GDISWLDFLER---VRK--LKEN---EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT 381
D+ L L R K L+++ AV P + + I SSGTTG+P + +T
Sbjct: 57 DDLKTLADLSRFPFTTKGDLRDSYPFGMFAV--PQDRISRIHASSGTTGKPTVVGYT--- 111
Query: 382 PFKAAADAWCHM--------DIRKADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNGS 432
A D W ++ R+ D V G G Y + G ++
Sbjct: 112 --AADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVI----- 164
Query: 433 PLGSGF----AKFVQDAKVTMLGVVPS----IVRTWKSTNCIDGYDWSSIRCFGSTGEAS 484
P G G + +QD + ++ V PS I + +D SS+R E
Sbjct: 165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG-LDPVQ-SSLRIGIFGAEP- 221
Query: 485 NVDEYLWL--MGRALYK----PVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLF 538
W M A+ + ++ G +E+ G + A
Sbjct: 222 ------WTNDMRVAIEQRMGIDAVDIYGLSEVMGPGV-----------ASECVETKDGPT 264
Query: 539 ILG----------NDGCPIPQNVPG-MGELALSPLIFGASSTLLNANHYDVYFSGMPSRN 587
I G +P G +GEL T L +P
Sbjct: 265 IWEDHFYPEIIDPETGEVLP---DGELGELVF---------TSLTK-------EALP--- 302
Query: 588 GQILR-RHGDVFE------RTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVL 640
I+R R D+ RT + GR+DD M + G+ V +IE +L
Sbjct: 303 --IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQ-------LL 353
Query: 641 ETAAIG-----VPPPDGGPEQLTIVV-VFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV 694
+ A+ V +G + LT+ V ++ + + + ++ + +
Sbjct: 354 KQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVI 413
Query: 695 SHVVPLPSLPRTATNKVMRRV--LRK 718
+V+P+ + R+ K RRV RK
Sbjct: 414 -NVLPVNGIERS-VGKA-RRVVDKRK 436
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 31/242 (12%), Positives = 63/242 (26%), Gaps = 29/242 (11%)
Query: 348 EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATP----FKAAADAWCHMDIRKADIVAW 403
P ++ + S GTTG PK + +A + + +A
Sbjct: 82 NLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAA 141
Query: 404 PTNLGWMMGPWLVYASLLNGASIALYNGSP------LGSGFAKFV--------------- 442
++G +L G + P L G V
Sbjct: 142 IPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTL 201
Query: 443 QDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK-PV 501
+ + L P ++R + S+ G N+DE ++ L
Sbjct: 202 MNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEF 261
Query: 502 IEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFIL-GNDGCPIPQNVPGMGELALS 560
G T G + + + + + ++ + G + ++
Sbjct: 262 SASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNVIVT 319
Query: 561 PL 562
L
Sbjct: 320 HL 321
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 33/212 (15%)
Query: 362 ILFSSGTTGEPK--AIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 419
I+++SGTTG+PK N D +M D +N + + YAS
Sbjct: 612 IMYTSGTTGKPKGNITTHANIQGLVKHVD---YMAFSDQDTFLSVSNYAFDAFTFDFYAS 668
Query: 420 LLNGASIALYNGSPLGSG--FAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 477
+LN A + + + L + V ++ ++ +RC
Sbjct: 669 MLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA---GEDWMKGLRCI 725
Query: 478 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEI--GGG------FITGSLLQAQSLAAFS 529
GE ++V + + G ++ G F T ++ + S
Sbjct: 726 LFGGERASVP---------HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISS 776
Query: 530 ----TPAMGCKLFILGNDGCPIPQNVPGMGEL 557
P ++IL P GEL
Sbjct: 777 LPIGKPISNASVYILNEQSQLQPFGAV--GEL 806
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 28/213 (13%)
Query: 362 ILFSSGTTGEPK--AIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 419
I+F+SGTTG+PK I N F D+ K + + + +
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPT 209
Query: 420 LLNGAS--IALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 477
L G + + V + PS ++ ++ F
Sbjct: 210 LALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHF 269
Query: 478 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEI--GGG------FITGSLLQAQSLAAFS 529
GE V + + E +I G ++ + + + ++
Sbjct: 270 YFDGEELTVS---------TARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYT 320
Query: 530 TPAMGC-----KLFILGNDGCPIPQNVPGMGEL 557
+G +I+ DG + GE+
Sbjct: 321 RLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEI 351
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 63/498 (12%), Positives = 117/498 (23%), Gaps = 142/498 (28%)
Query: 317 PAKGSSFSMKLRDGDISWLDFLERVR------KLKENEFAAVEQPVEAFTNILFSSGTTG 370
P K + + D L+ E + K + + + + E + G
Sbjct: 917 PEKKEMIQEVIVEED---LEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSV--KLLKG 971
Query: 371 EPKAIPWTNATPFKAAA------DAWCHM----DIRKAD------IV----AWPTNLGWM 410
IP A +A + I + D +V A+ G
Sbjct: 972 ATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAF-IASGIT 1030
Query: 411 MGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLG-------VVPSIVRTWKST 463
++ + + +GS +G G + K + S +
Sbjct: 1031 --DPYEMYKYVHVSEVGNCSGSGMG-GVSALRGMFKDRFKDEPVQNDILQESFI-----N 1082
Query: 464 NCIDGYDWSSIRCFGSTG-----------EASNVDEYLWL--MGRALYKPVIEYCGGTE- 509
+ + S+G +VD + G+A + I GG +
Sbjct: 1083 TMSAWV--NMLL-ISSSGPIKTPVGACATSVESVDIGVETILSGKA--RICI--VGGYDD 1135
Query: 510 -----IGG--------------------------------GFITGS-----LLQAQSLAA 527
GF+ ++ LA
Sbjct: 1136 FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLAL 1195
Query: 528 FSTPAMGCKLFILG--------NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY 579
MG I G D PG G I + ++ Y
Sbjct: 1196 ----KMGVP--IYGIVAMAATATDKIGRSVPAPGKG-------ILTTAREHHSSVKYASP 1242
Query: 580 FSGMPSRNGQILRRHGDVFERTSG--GYYRAHG---RADDTMNLGGIKVSSVEIERICNA 634
M R Q++ R + + + ++D + + E
Sbjct: 1243 NLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQL 1302
Query: 635 VDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV 694
+ G P + T DL S N +
Sbjct: 1303 RAA----QQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATI 1358
Query: 695 SHVVPLPSLPRTATNKVM 712
+ + + L R+ N V+
Sbjct: 1359 NEM--MKHLGRSEGNPVI 1374
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 35/148 (23%), Positives = 50/148 (33%), Gaps = 34/148 (22%)
Query: 330 GDISWLDFLER---VRK--LKEN----EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNA 380
I LD + + K ++ N A I SSGTTG P I +
Sbjct: 52 DSIQSLDDIRKIPFTTKSDMRANYPFGLVAGD--MKRDGVRIHSSSGTTGNPTVIVHS-- 107
Query: 381 TPFKAAADAWCHM--------DIRKADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNG 431
+ D+W ++ IRK D+ + G G Y + G
Sbjct: 108 ---QHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV---- 160
Query: 432 SPLGSGF----AKFVQDAKVTMLGVVPS 455
P +G KF+ D K T L +PS
Sbjct: 161 -PAAAGNSKRQIKFISDFKTTALHAIPS 187
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.58 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.56 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.76 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.71 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.68 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 98.16 | |
| 4hvm_A | 493 | Tlmii; PSI-biology, midwest center for structural | 97.54 | |
| 1l5a_A | 436 | Amide synthase, VIBH; nonribosomal peptide synthet | 97.54 | |
| 2xhg_A | 466 | Tyrocidine synthetase A; isomerase, nonribosomal p | 95.3 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 90.2 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 89.6 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 89.06 | |
| 1q9j_A | 422 | PAPA5, polyketide synthase associated protein 5; c | 83.82 |
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-94 Score=891.80 Aligned_cols=637 Identities=16% Similarity=0.144 Sum_probs=520.2
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCCCCchhheeeeeecCCC-C-CCCCCccCC------
Q 004815 18 EALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDF-G-PDPPAWIPD------ 87 (729)
Q Consensus 18 ~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r~~~~~~~~f~~~~~~~-~-~~~~~~~~~------ 87 (729)
+++++..+++.+|.++|++++++.++ +||++||+++++.++ .+|+|++||+.+++.. + .......++
T Consensus 302 lplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~i~~~l~---~~~lf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 378 (1304)
T 2vsq_A 302 VPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQAD---QPKLIDHIIVFENYPLQDAKNEESSENGFDMVDV 378 (1304)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHHHHHSSS---CSSSCCCEEEECSSCHHHHSCCCHHHHSEEEEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHHHHHHhC---CCcccceeEEEeecccccccccccccCCceeEee
Confidence 46777778889999999999999888 999999999999986 6799999999887643 0 000000000
Q ss_pred -hhhhhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCC-CCC
Q 004815 88 -PEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGEN-HLS 164 (729)
Q Consensus 88 -~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 164 (729)
.....+|||++.+.. ++++...+ |++ ++|++.+++++.++|.++|+++ ...|+..+...++..+ ++.
T Consensus 379 ~~~~~~~~dL~l~~~~-~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l----~~~p~~~~~~~~~l~~~e~~ 448 (1304)
T 2vsq_A 379 HVFEKSNYDLNLMASP-GDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQL----IQNPDQPVSTINLVDDRERE 448 (1304)
T ss_dssp EECCCCCSSEEEEEEC-SSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHH----HHSTTSBGGGCCCCCHHHHH
T ss_pred ecccccccCeEEEEec-CCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHh----ccCccccccccCCCCHHHHH
Confidence 012467788776543 56677788 988 9999999999999999999997 3445555555444332 222
Q ss_pred CCCCCcCCCCcc---hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 004815 165 NPGGQWLPGAFV---NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAID 241 (729)
Q Consensus 165 ~~~~~~~~~~~~---~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~ 241 (729)
..+..|+..... ....++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++|++|+|+
T Consensus 449 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~ 520 (1304)
T 2vsq_A 449 FLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSVVALY 520 (1304)
T ss_dssp HHHTTTSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred HHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEE
Confidence 334566654322 3456788889999999999999877 99999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCC
Q 004815 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGS 321 (729)
Q Consensus 242 ~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 321 (729)
++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.........++ .....++...
T Consensus 521 ~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~---------~~~~~~~~~~-- 589 (1304)
T 2vsq_A 521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP---------YTGTTLFIDD-- 589 (1304)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC---------CCSEEEESSC--
T ss_pred eCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC---------CCCcEEEecc--
Confidence 99999999999999999999999999999999999999999999999875432111111 0011111100
Q ss_pred CcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEE
Q 004815 322 SFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV 401 (729)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 401 (729)
... .. .....+.....++++|||+|||||||+||||+++|+++.+. .+....++++++|++
T Consensus 590 ---------~~~-------~~--~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~ 650 (1304)
T 2vsq_A 590 ---------QTR-------FE--EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTF 650 (1304)
T ss_dssp ---------GGG-------GG--SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEE
T ss_pred ---------ccc-------cc--cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEE
Confidence 000 00 01112233457899999999999999999999999999876 555667899999999
Q ss_pred EEccCcchhhhHHHHHHHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEe
Q 004815 402 AWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGS 479 (729)
Q Consensus 402 l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~ 479 (729)
+++++++|+.+.+++|.+|+.|+++++.+.. .++..+.+.|++++||+++++|++++.|.+.. ...+++||.+++
T Consensus 651 l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~ 727 (1304)
T 2vsq_A 651 LSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILF 727 (1304)
T ss_dssp EECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEE
T ss_pred EEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEE
Confidence 9999999999999999999999999998743 47889999999999999999999999998653 223678999999
Q ss_pred ecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcc---cccccccccCCCCCcEEEEEcCCCCccCCCCCceeE
Q 004815 480 TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 556 (729)
Q Consensus 480 gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGe 556 (729)
|||++++++.+++.+.+++++++|.||+||++++++..... ......++|+|++|++++|+|++++++|.|++ ||
T Consensus 728 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GE 805 (1304)
T 2vsq_A 728 GGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAV--GE 805 (1304)
T ss_dssp ESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCC--EE
T ss_pred ecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCc--eE
Confidence 99999999999988888778999999999999865543322 22345789999999999999999999999997 99
Q ss_pred EEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCC
Q 004815 557 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 636 (729)
Q Consensus 557 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~ 636 (729)
|+|++..+..+ |+++++.|+++|+.+|+.+|.+||||||+|+|++||+|+|+||+|+|||+||+||+|+|||++|. +|
T Consensus 806 l~i~G~~v~~G-Y~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~-~~ 883 (1304)
T 2vsq_A 806 LCISGMGVSKG-YVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQ-EY 883 (1304)
T ss_dssp EEEEETTCCCC-BTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHH-HS
T ss_pred EEEeccccCcc-ccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHH-hC
Confidence 99977666554 46789999999999998889999999999999999999999999999999999999999999995 99
Q ss_pred CCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHH
Q 004815 637 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 716 (729)
Q Consensus 637 p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L 716 (729)
|+|++|+|++.++..++ +.++||++.+. ..+.+++++ +|+++||.||+|+.|+++++||+|+||||||++|
T Consensus 884 p~V~~a~V~~~~~~~~~-~~l~a~vv~~~----~~~~~~l~~----~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L 954 (1304)
T 2vsq_A 884 PGVKDAVVVADRHESGD-ASINAYLVNRT----QLSAEDVKA----HLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954 (1304)
T ss_dssp SSCCEEEEEEECCSSSC-CEEEEEEECSS----SSCHHHHHH----HHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCC
T ss_pred CCCceEEEEEEecCCCC-EEEEEEEeCCC----CCCHHHHHH----HHHHhChHhhhccEEEEecccCCCCCcccCHhhc
Confidence 99999999999887766 89999999776 356666665 5788999999999999999999999999999999
Q ss_pred HHHHH
Q 004815 717 RKQLA 721 (729)
Q Consensus 717 ~~~~~ 721 (729)
++...
T Consensus 955 ~~~~~ 959 (1304)
T 2vsq_A 955 PKPDQ 959 (1304)
T ss_dssp CCCCG
T ss_pred CCcch
Confidence 76543
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-88 Score=782.34 Aligned_cols=581 Identities=26% Similarity=0.402 Sum_probs=477.2
Q ss_pred CHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeEEE
Q 004815 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIR 197 (729)
Q Consensus 118 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~ 197 (729)
+|..+.+++++++++||.++++. +.|.++++++++.... ......+||+++..|.++++|+++++++||++|++
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~wf~~~~~n~~~~~l~~~a~~~pd~~Al~ 96 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFA----PGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAII 96 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECC----TTCCEEEESTTCEECHHHHHTGGGHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccc----cCCCCCEECCCCChhHHHHHHHHHhccCCCceEEE
Confidence 46888999999999999999885 6788888888754210 00234689999999999999999998999999999
Q ss_pred EeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHH
Q 004815 198 WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277 (729)
Q Consensus 198 ~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~ 277 (729)
+.+. ..+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++
T Consensus 97 ~~~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~ 174 (652)
T 1pg4_A 97 WEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGC 174 (652)
T ss_dssp EECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHH
T ss_pred EEcC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHH
Confidence 8543 12234689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecceecCCccccchhhHHhhcC-------CcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccc
Q 004815 278 LRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA-------PLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 350 (729)
Q Consensus 278 l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (729)
++++++++||+++.....++.++....+.+.+. ..++++...+..... ......+|.+++.... ...+
T Consensus 175 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~ 249 (652)
T 1pg4_A 175 IIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS----PEHQ 249 (652)
T ss_dssp HHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSC----SCCC
T ss_pred HHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcC----CCCC
Confidence 999999999999987776666655444433221 234444432211110 0123456777765322 1122
Q ss_pred cccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHH-HHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEEE
Q 004815 351 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA-DAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 428 (729)
Q Consensus 351 ~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl 428 (729)
.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|++++ +.++.+|++|+++++
T Consensus 250 ~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl 329 (652)
T 1pg4_A 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329 (652)
T ss_dssp CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred ccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEE
Confidence 3345689999999999999999999999999876653 44567899999999999999999998 788999999999999
Q ss_pred eCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHhccC--CCCe
Q 004815 429 YNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--YKPV 501 (729)
Q Consensus 429 ~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~--~~~l 501 (729)
+++. .++..+++.|++++||+++++|++++.|++... ....++++||.+++|||++++++++++.+.++ ++++
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i 409 (652)
T 1pg4_A 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPV 409 (652)
T ss_dssp ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCE
T ss_pred ECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcE
Confidence 9864 478899999999999999999999999987643 34567899999999999999999999987765 3789
Q ss_pred eecccccccccccccCCc-ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCC-cccccccccccc
Q 004815 502 IEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGAS-STLLNANHYDVY 579 (729)
Q Consensus 502 ~~~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~-~~~~~~~~~~~~ 579 (729)
+|.||+||+++.++.... ..+...+++|+|++|++++|+|++|+++|.|+. |||+|++.+.+.. .|+++++.+...
T Consensus 410 ~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~gY~~~~e~~~~~ 487 (652)
T 1pg4_A 410 VDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFEQT 487 (652)
T ss_dssp EEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHHHH
T ss_pred EccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhhhhcCCHHHHHhh
Confidence 999999999876555433 223456899999999999999999999999986 9999966322211 235566655444
Q ss_pred cccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEE
Q 004815 580 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 659 (729)
Q Consensus 580 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a 659 (729)
|... .+| ||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++|
T Consensus 488 ~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a 561 (652)
T 1pg4_A 488 YFST--FKN--MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYA 561 (652)
T ss_dssp HHSS--STT--SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hhhc--CCC--EEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEE
Confidence 3221 123 9999999999999999999999999999999999999999995 9999999999999988777 89999
Q ss_pred EEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 660 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 660 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
||++++ +. . ..+++.+.|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.+
T Consensus 562 ~Vv~~~-~~-~-~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 621 (652)
T 1pg4_A 562 YVTLNH-GE-E-PSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 621 (652)
T ss_dssp EEEECT-TC-C-CCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred EEEECC-CC-C-CCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhC
Confidence 999987 54 2 234567778888999999999999999999999999999999999999875
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-88 Score=780.67 Aligned_cols=592 Identities=24% Similarity=0.378 Sum_probs=476.7
Q ss_pred CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCC
Q 004815 112 YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSL 191 (729)
Q Consensus 112 y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 191 (729)
++..+.+|..++++++++++.||.++++.. +.|.++++++++.... .........+||.++..|.++++|+++++++|
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~~p 96 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPK-TGRPSFQNNAWFLNGQLNACYNCVDRHALKTP 96 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSS-SCSBCSTTCCBSTTCEECHHHHHTHHHHTTCT
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccc-cccCCCCCCCcCCCCCccHHHHHHHHHhccCC
Confidence 556667889999999999999999999862 5899999988865410 00001223689999999999999999999999
Q ss_pred CCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCC
Q 004815 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN-ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270 (729)
Q Consensus 192 d~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~ 270 (729)
|++|+++.+. ..+..+++||+||+++++++|+.|+ ++||++||+|+|+++|++++++++|||+++|++++|++|.++
T Consensus 97 d~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~ 174 (663)
T 1ry2_A 97 NKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 174 (663)
T ss_dssp TSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSC
T ss_pred CceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCC
Confidence 9999998643 1233468999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhc---C--CcEEEEcCCCC-CcccccCCCCcCHHHHHHHhhcc
Q 004815 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ---A--PLAIVIPAKGS-SFSMKLRDGDISWLDFLERVRKL 344 (729)
Q Consensus 271 ~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 344 (729)
.+++.++++++++++||+++...+.++.++....+.+.+ + ..++++..... .... ......+|.++.....
T Consensus 175 ~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 251 (663)
T 1ry2_A 175 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYK-- 251 (663)
T ss_dssp HHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSC--
T ss_pred HHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcC--
Confidence 999999999999999999998777666666554444332 2 23444443221 1100 1123456777664321
Q ss_pred ccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHH-HHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhc
Q 004815 345 KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA-DAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLN 422 (729)
Q Consensus 345 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~ 422 (729)
...+.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.++++|++++ +.++++|+.
T Consensus 252 --~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~ 329 (663)
T 1ry2_A 252 --TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLY 329 (663)
T ss_dssp --SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHH
T ss_pred --CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHh
Confidence 12233455689999999999999999999999999876654 44567899999999999999999998 788999999
Q ss_pred CceEEEeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHhccC
Q 004815 423 GASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 497 (729)
Q Consensus 423 G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~ 497 (729)
|++++++++. +++..++++|++++||+++++|++++.|.+... ....++++||.+++|||++++++++++.+.++
T Consensus 330 G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g 409 (663)
T 1ry2_A 330 GCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIG 409 (663)
T ss_dssp TSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999864 477899999999999999999999999987654 34567899999999999999999999988765
Q ss_pred --CCCeeecccccccccccccCCc--ccccccccccCCCCCcEEEEEcC-CCCccCC-CCCceeEEEeeccccCCC-ccc
Q 004815 498 --YKPVIEYCGGTEIGGGFITGSL--LQAQSLAAFSTPAMGCKLFILGN-DGCPIPQ-NVPGMGELALSPLIFGAS-STL 570 (729)
Q Consensus 498 --~~~l~~~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~-g~~giGel~v~~~~~~~~-~~~ 570 (729)
+++++|.||+||+++.++.... ..+...+++|+|++|++++|+|+ +|++++. |+. |||+|.+...+.. .|+
T Consensus 410 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~gy~ 487 (663)
T 1ry2_A 410 KNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFARTIW 487 (663)
T ss_dssp CSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCEET
T ss_pred CCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcccc
Confidence 4789999999999876555433 23456689999999999999999 8999988 875 9999965322211 245
Q ss_pred ccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCC
Q 004815 571 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650 (729)
Q Consensus 571 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 650 (729)
++++.+.+.|... .+| ||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++
T Consensus 488 ~~~~~~~~~~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~ 562 (663)
T 1ry2_A 488 KNHDRYLDTYLNP--YPG--YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDD 562 (663)
T ss_dssp TCHHHHHHHHTSS--STT--SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCC
T ss_pred cChHHHHHhhhcC--CCC--EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEecC
Confidence 6666665544321 124 9999999999999999999999999999999999999999995 9999999999999988
Q ss_pred CCCceeEEEEEEecCCCCCC---CChH---HHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 651 DGGPEQLTIVVVFKDSNYTP---PDLN---QLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 651 ~~g~~~l~a~vv~~~~~~~~---~~~~---~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
..| +.++|||++++ +. . ...+ ++.+.|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.+
T Consensus 563 ~~g-~~~~a~Vv~~~-~~-~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 563 LTG-QAVAAFVVLKN-KS-SWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 637 (663)
T ss_dssp TTS-CCCEEEEEEC--------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred CCC-eEEEEEEEEcC-CC-ccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcC
Confidence 777 88999999987 43 1 1011 467778888999999999999999999999999999999999998765
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-82 Score=726.59 Aligned_cols=523 Identities=20% Similarity=0.251 Sum_probs=416.0
Q ss_pred CCcCCCCcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Q 004815 168 GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (729)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (729)
..|......|.+.++|+++++++||++|+++.+. .+..+++||+||+++++++|++|+++|+++||+|+|+++|+++
T Consensus 47 ~~~~~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~---~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e 123 (580)
T 3etc_A 47 FKILVPENFNFAYDVVDVYARDSPEKLAMIWCDD---YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD 123 (580)
T ss_dssp CCBCCCSSCCHHHHTHHHHHHHCTTCEEEEEEES---SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH
T ss_pred CCCCCcccchHHHHHHHHHHhhCCCCEEEEEEcC---CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence 3466667789999999999999999999998654 2344689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC---CcEEEEcCCCCCcc
Q 004815 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA---PLAIVIPAKGSSFS 324 (729)
Q Consensus 248 ~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~ 324 (729)
+++++|||+|+|+++||++|.++.+++.+++++++++++|++.... .......+...++ ...+.+...
T Consensus 124 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----- 194 (580)
T 3etc_A 124 FWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD----- 194 (580)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS-----
T ss_pred HHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc-----
Confidence 9999999999999999999999999999999999999999987521 0122223333332 233333221
Q ss_pred cccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEc
Q 004815 325 MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWP 404 (729)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 404 (729)
...+...+.+.+.................++++|||+|||||||.||||+++|.+++..+......+++.+++++++.
T Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (580)
T 3etc_A 195 --VLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTV 272 (580)
T ss_dssp --CCTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEEC
T ss_pred --cccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEe
Confidence 112345566665543321111111134678999999999999999999999999998888777777899999999999
Q ss_pred cCcchhhhHHH-HHHHhhcCceEEEeC-CCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecC
Q 004815 405 TNLGWMMGPWL-VYASLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGE 482 (729)
Q Consensus 405 ~~~~~~~~~~~-i~~~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe 482 (729)
++++|+.+.+. ++.++..|+++++.+ ...++..+++.|+++++|+++++|++++.|++.. ....++++||.+++|||
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe 351 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGE 351 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSS
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccC
Confidence 99999999864 788999999999985 4568889999999999999999999999998763 34567899999999999
Q ss_pred CCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeec-
Q 004815 483 ASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSP- 561 (729)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~- 561 (729)
++++++.+++.+.++ ++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|.|+. |||+|.+
T Consensus 352 ~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v~~~ 427 (580)
T 3etc_A 352 PLNPEVFNRFLEFTG-IKLMEGFGQTETVVTIATFP-WMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVINTM 427 (580)
T ss_dssp CCCHHHHHHHHHHHS-CCCEEEECCTTSSCCEECCT-TSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEECT
T ss_pred CCCHHHHHHHHHHhC-CeEecccccccccceeecCC-CCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEEecC
Confidence 999999999987664 89999999999987554433 334566899999999999999999999999997 9999963
Q ss_pred ----cccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCC
Q 004815 562 ----LIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 637 (729)
Q Consensus 562 ----~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p 637 (729)
..+. ..|+++++.|++.|.. | ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||
T Consensus 428 ~g~~~~~~-~gY~~~p~~t~~~f~~-----g--wy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p 498 (580)
T 3etc_A 428 EGKPVGLF-VHYGKDPERTEETWHD-----G--YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI-QHP 498 (580)
T ss_dssp TCCCTTCC-CEETTCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT-TST
T ss_pred CCCCCeee-ccccCCHhHHHhhcCC-----C--EEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCC
Confidence 1121 1256788888888852 3 9999999999999999999999999999999999999999995 999
Q ss_pred CeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 638 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 638 ~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
+|.+|+|++++++..| +.++|+|++++ +. ...+++.+.|+++++++||+||+|..|+++++||+|+||||+|++|+
T Consensus 499 ~V~~a~Vvg~~~~~~g-~~~~a~vv~~~-~~--~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr 574 (580)
T 3etc_A 499 AVLECAITGVPDPVRG-QVIKATIVLTK-DY--TPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIR 574 (580)
T ss_dssp TEEEEEEEEEEETTTE-EEEEEEEEECT-TC--CCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------
T ss_pred CeeeEEEEeeeccCCC-cEEEEEEEECC-CC--CCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHH
Confidence 9999999999998887 89999999987 54 23456777888899999999999999999999999999999999999
Q ss_pred HHHHh
Q 004815 718 KQLAQ 722 (729)
Q Consensus 718 ~~~~~ 722 (729)
++..+
T Consensus 575 ~~~~~ 579 (580)
T 3etc_A 575 DKDQS 579 (580)
T ss_dssp -----
T ss_pred hHhhc
Confidence 98653
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-82 Score=726.97 Aligned_cols=479 Identities=18% Similarity=0.145 Sum_probs=398.7
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|
T Consensus 28 tl~~~~~~~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailk 99 (620)
T 4dg8_A 28 TVVARFSEMAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILL 99 (620)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 456788899999999999999887 999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
+|++|||+||.+|.+++.+++++++++++++++.........+ ...+..
T Consensus 100 aGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~------------~~~~~~------------------- 148 (620)
T 4dg8_A 100 SGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLP------------CVPVRH------------------- 148 (620)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSC------------EEEGGG-------------------
T ss_pred hCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCCc------------eeeecc-------------------
Confidence 9999999999999999999999999999997664221100000 000000
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~ 417 (729)
.. ............++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++.+|++|+++++++|
T Consensus 149 ---~~-~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 223 (620)
T 4dg8_A 149 ---LP-AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW 223 (620)
T ss_dssp ---CC-CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred ---CC-cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence 00 001111223346899999999999999999999999999887765 4568899999999999999999999999
Q ss_pred HHhhcCceEEEeC-CCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 418 ASLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 418 ~~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
.+|+.|+++++.+ ...++..++++|+++++|++.++|++++.|.+.. ..++++||.+++|||+++++..+++...+
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~ 300 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRH 300 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHC
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhC
Confidence 9999999999975 3458889999999999999999999999998753 34578999999999999999988888777
Q ss_pred CCCCeeecccccccccccccCCc---ccccccccccCCCCCcEEEEEcCCCCc-cCCCCCceeEEEeeccccCCCccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSL---LQAQSLAAFSTPAMGCKLFILGNDGCP-IPQNVPGMGELALSPLIFGASSTLLN 572 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~v~d~~g~~-~p~g~~giGel~v~~~~~~~~~~~~~ 572 (729)
++++++|.||+||++++++.... .......++|+|++|++++|+|+++++ +|.|++ |||+|++..+..+ |+++
T Consensus 301 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~G-Y~~~ 377 (620)
T 4dg8_A 301 PRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQG-YRND 377 (620)
T ss_dssp TTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSE-ETTC
T ss_pred CCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccc-cCCC
Confidence 78899999999999976543322 222345789999999999999999988 799997 9999976665543 4678
Q ss_pred ccccccccccccCCCCc--eeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCC
Q 004815 573 ANHYDVYFSGMPSRNGQ--ILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650 (729)
Q Consensus 573 ~~~~~~~f~~~p~~~g~--~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 650 (729)
++.|+++|..+|. .|. +||||||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++
T Consensus 378 p~~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~ 455 (620)
T 4dg8_A 378 AARTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERN 455 (620)
T ss_dssp HHHHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEET
T ss_pred hhhhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCC
Confidence 8999999998884 344 89999999999999999999999999999999999999999995 9999999999998876
Q ss_pred CCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 651 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 651 ~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
.. ..++++++... . .. ++ .|+++||.||+|+.|+++++||+|+||||||++|++++.+
T Consensus 456 ~~--~~lv~~~~~~~-~---~~----~~----~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 456 GV--KQLLCAWTGKA-D---AS----PQ----ALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp TE--EEEEEEEEECT-T---CC----CH----HHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred Cc--eEEEEEEecCh-H---HH----HH----HHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 43 46666666543 1 12 22 3667899999999999999999999999999999987654
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-81 Score=709.95 Aligned_cols=503 Identities=18% Similarity=0.217 Sum_probs=421.9
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|.++++++||++|+++...+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 23 ~l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~ 96 (536)
T 3ni2_A 23 PLHSYVLENLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASH 96 (536)
T ss_dssp CHHHHHTTTGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 3567788899999999999986321 2899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
+|++++|++|.++.+++.+++++++++++|+++... .............++.+... ..+...+.++
T Consensus 97 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 162 (536)
T 3ni2_A 97 RGAIITAANPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSEL 162 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHH
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHH
Confidence 999999999999999999999999999999987532 22222222222233332211 1233445555
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHh----hCCCCCCCEEEEccCcchhhhH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGP 413 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~ 413 (729)
...... ..+.....++++|||+|||||||.||||+++|+++++.+.+... .+++.++|++++.+|++|++++
T Consensus 163 ~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (536)
T 3ni2_A 163 TQADEN----EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYAL 238 (536)
T ss_dssp HTSCGG----GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHH
T ss_pred hhcccc----ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHH
Confidence 443221 22334567899999999999999999999999999888776543 4578899999999999999998
Q ss_pred -HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHH
Q 004815 414 -WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWL 492 (729)
Q Consensus 414 -~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~ 492 (729)
..++.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++
T Consensus 239 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~ 317 (536)
T 3ni2_A 239 NSIMLCGLRVGAPILIMPK-FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTV 317 (536)
T ss_dssp HHTHHHHHHHTCCEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEcCC-CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHH
Confidence 567899999999999864 678899999999999999999999999998876667789999999999999999999999
Q ss_pred HhccCCCCeeecccccccccccccCC----cccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCC
Q 004815 493 MGRALYKPVIEYCGGTEIGGGFITGS----LLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGAS 567 (729)
Q Consensus 493 ~~~~~~~~l~~~YG~TE~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~ 567 (729)
++.+++++++|.||+||++..++... .......+++|+|++|++++|+| ++|+++|.|++ |||+|++..+..+
T Consensus 318 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G 395 (536)
T 3ni2_A 318 RAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKG 395 (536)
T ss_dssp HHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSE
T ss_pred HHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchh
Confidence 98888899999999999986544332 12233567899999999999999 56999999997 9999976655543
Q ss_pred cccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEee
Q 004815 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 647 (729)
Q Consensus 568 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~ 647 (729)
|+++++.|++.|..+ +||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|+++
T Consensus 396 -Y~~~p~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~ 467 (536)
T 3ni2_A 396 -YLNDPEATSRTIDKE------GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGL 467 (536)
T ss_dssp -ETTCHHHHHHHBCTT------SCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEE
T ss_pred -hcCChhHHHhhccCC------CceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEee
Confidence 467888888888532 39999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 648 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 648 ~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+++..| +.++|||+..+ +. ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++++++
T Consensus 468 ~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 468 KDEDAG-EVPVAFVVKSE-KS-QATEDEIKQ----YISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EETTTE-EEEEEEEEECT-TC-CCCHHHHHH----HHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ecCCCC-ceeEEEEEecC-CC-CCCHHHHHH----HHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 988887 88999999887 54 456666665 5788999999999999999999999999999999998765
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-82 Score=717.95 Aligned_cols=516 Identities=18% Similarity=0.199 Sum_probs=390.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|+++++++||++|+++.+.....+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 21 l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 100 (549)
T 3g7s_A 21 LADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRV 100 (549)
T ss_dssp TTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 45678888899999999999874322334459999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
|+++||+||.++.+++.+++++++++++|+++... .....+........+++.. .....+.++.
T Consensus 101 G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 164 (549)
T 3g7s_A 101 AATPVPINPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVM 164 (549)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHH
Confidence 99999999999999999999999999999997532 2222222222222222221 1234566665
Q ss_pred HHhhccccCccccccCCC-CCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHH
Q 004815 339 ERVRKLKENEFAAVEQPV-EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~ 417 (729)
..... ........+ +++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..++
T Consensus 165 ~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~ 240 (549)
T 3g7s_A 165 DSGSE----DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVN 240 (549)
T ss_dssp HHSCS----CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHT
T ss_pred hcCcc----ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHH
Confidence 54321 122223334 8999999999999999999999999999998888889999999999999999999987788
Q ss_pred HHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCC--CCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 418 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID--GYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 418 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~--~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|++..... ..++++||.+++||+++++++.+++.+.
T Consensus 241 ~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~ 319 (549)
T 3g7s_A 241 LMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKL 319 (549)
T ss_dssp THHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHH
Confidence 9999999999987 468889999999999999999999999998764322 2568999999999999999999988766
Q ss_pred ----cC--CCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCc
Q 004815 496 ----AL--YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 496 ----~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~ 568 (729)
++ +++++|.||+||++++++...........++|+|++|++++|+| ++|+++|.|+. |||+|++..+..+
T Consensus 320 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~G- 396 (549)
T 3g7s_A 320 AAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKG- 396 (549)
T ss_dssp HHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSE-
T ss_pred HHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhh-
Confidence 33 37899999999999876666554445678999999999999999 88999999997 9999976655443
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeec
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 648 (729)
|+++++.|++.|..++ +|.+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+
T Consensus 397 Y~~~~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~ 473 (549)
T 3g7s_A 397 YWKREKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGKP 473 (549)
T ss_dssp ETTCTTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECCC
T ss_pred hCCChhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeE
Confidence 4678899999886443 47789999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceeEEEEEEecCCCC-CCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhhcC
Q 004815 649 PPDGGPEQLTIVVVFKDSNY-TPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQNS 727 (729)
Q Consensus 649 ~~~~g~~~l~a~vv~~~~~~-~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~~~ 727 (729)
++..| +.++|+|++++ +. ...+.+++++ +|+++||.||+|..|+++++||+|+||||||++|+++..+-++++
T Consensus 474 ~~~~g-~~~~a~vv~~~-~~~~~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~ 547 (549)
T 3g7s_A 474 DEEAG-EVPKAFIVLKP-EYRGKVDEEDIIE----WVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHHH 547 (549)
T ss_dssp C-------CEEEEEECS-TTTTSCCHHHHHH----HHHTTCC-----CCCCEEEECC-----------------------
T ss_pred ccccC-ceEEEEEEECC-CccCcCCHHHHHH----HHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcccccc
Confidence 88877 88999999987 41 1355566655 688899999999999999999999999999999999988755443
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-80 Score=698.57 Aligned_cols=496 Identities=20% Similarity=0.190 Sum_probs=415.0
Q ss_pred hhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Q 004815 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (729)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa 260 (729)
++|+++++++||++|++.....+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 78 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGG 78 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhCCCCceEEEecCCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 46778888999999988633211 3899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHH
Q 004815 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 340 (729)
Q Consensus 261 ~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 340 (729)
++||+||.++.+++.+++++++++++|+++... .....+.......+..+... ....+.+....
T Consensus 79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 142 (503)
T 4fuq_A 79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR------DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAG 142 (503)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGT------TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEECchhh------HHHHHHHhhcCceEEEecCC----------cccccchhhhc
Confidence 999999999999999999999999999987532 22233333333322222111 11112221111
Q ss_pred hhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHH
Q 004815 341 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYAS 419 (729)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~ 419 (729)
...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++ ..++.+
T Consensus 143 ----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 218 (503)
T 4fuq_A 143 ----ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218 (503)
T ss_dssp ----SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHH
T ss_pred ----CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 112223345678999999999999999999999999999999998899999999999999999999987 457789
Q ss_pred hhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCC
Q 004815 420 LLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 499 (729)
Q Consensus 420 L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~ 499 (729)
++.|+++++.+. .++..+++.++ ++|++.++|+++..|++.......++++||.+++||+++++++.+++...++ .
T Consensus 219 l~~g~~~~~~~~-~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~ 294 (503)
T 4fuq_A 219 LFARGSMIFLPK-FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-H 294 (503)
T ss_dssp HHTTCEEEECSS-CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-C
T ss_pred HHhCCEEEEcCC-CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-C
Confidence 999999999874 68888999997 8999999999999999887666677899999999999999999999887765 7
Q ss_pred CeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCccccccccccc
Q 004815 500 PVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 578 (729)
Q Consensus 500 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~ 578 (729)
+++|.||+||+++.++ .........+++|+|++|++++|+| ++|+++|.|+. |||+|++..+..+ |+++++.|++
T Consensus 295 ~~~~~YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~~~~t~~ 370 (503)
T 4fuq_A 295 AVLERYGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKG-YWRMPEKTKS 370 (503)
T ss_dssp CEEECCEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCC-BTTCHHHHHH
T ss_pred CccceEcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhh-hcCChhhhHh
Confidence 8999999999987643 3333344567899999999999999 78999999997 9999976655543 4678888998
Q ss_pred ccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 579 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
.|..++ ||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..+ +.++
T Consensus 371 ~f~~~g------~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 442 (503)
T 4fuq_A 371 EFRDDG------FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVT 442 (503)
T ss_dssp TBCTTS------CEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred hhCCCC------CeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeE
Confidence 887433 9999999999999999999999999999999999999999995 9999999999999998877 8899
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 659 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 659 a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
|+|+.++ +. ..+.+++++ +++++||.||+|..|+++++||+|+||||||++|++++.++
T Consensus 443 a~v~~~~-~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 443 AVVVRDK-GA-TIDEAQVLH----GLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEEECT-TC-CCCHHHHHH----HHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEEeCC-CC-CCCHHHHHH----HHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 9999887 54 466666655 58889999999999999999999999999999999998764
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-80 Score=695.88 Aligned_cols=497 Identities=17% Similarity=0.143 Sum_probs=425.8
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
.++|.++++++||++|+++.++ ++||+||+++++++|++|+++ |+++|++|+++++|++++++++|||+++
T Consensus 4 ~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 4 LHAIQTHAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 3567888999999999999776 999999999999999999885 8899999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
|++++|++|.++.+++.+++++++++++|+++...... .. .......+.++.
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~------------~~----------------~~~~~~~~~~~~ 127 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA------------VG----------------QQIQTVSAEELL 127 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC------------CC----------------CSSCEEEHHHHH
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh------------cc----------------cccceecHhhhh
Confidence 99999999999999999999999999999976421000 00 001123344443
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHH
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~ 418 (729)
..... .........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.
T Consensus 128 ~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 128 ENEGG---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp TSCSC---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred ccccC---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 32211 112233457899999999999999999999999999999999888999999999999999999999999999
Q ss_pred HhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 419 SLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 419 ~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
+|..|+++++.+.. .++..+++.|+++++|++.++|+++..++.........++++|.+++||+++++++.+++.+.+
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~ 284 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERF 284 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHC
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHC
Confidence 99999999998643 3678899999999999999999999999987766667789999999999999999999999988
Q ss_pred CCCCeeecccccccccccccCCcc----cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLN 572 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~ 572 (729)
++++++|.||+||+++.++..... ......++|+|++|++++|+|++|+++|.|++ |||+|.+..+..+ |+++
T Consensus 285 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~ 361 (511)
T 3e7w_A 285 PKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRG-YLGE 361 (511)
T ss_dssp TTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCC-BTTC
T ss_pred CCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChh-hCCC
Confidence 889999999999998765543221 12345679999999999999999999999997 9999976655443 4678
Q ss_pred ccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004815 573 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652 (729)
Q Consensus 573 ~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~ 652 (729)
++.|++.|...+ |.+||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|. +||+|.+|+|++.+++..
T Consensus 362 ~~~t~~~f~~~~---g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~ 436 (511)
T 3e7w_A 362 PELTEKAFFSHE---GQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGT 436 (511)
T ss_dssp HHHHHHHEEESS---SSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSS
T ss_pred cccchhhhcCCC---CCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCC
Confidence 888988886533 6678999999999 59999999999999999999999999999995 899999999999988777
Q ss_pred CceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhhc
Q 004815 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 726 (729)
Q Consensus 653 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~~ 726 (729)
+ +.++|+|++++ +. ..+..++.+.|+++++++||.||+|..|+++++||+|+||||||++|++++.+...+
T Consensus 437 ~-~~~~a~vv~~~-~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 507 (511)
T 3e7w_A 437 V-EYLIAAIVPEE-HE-FEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHH 507 (511)
T ss_dssp C-CEEEEEEEECC-CC-CSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTC
T ss_pred c-eEEEEEEEecc-cc-ccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhccc
Confidence 7 88999999887 44 345566778888899999999999999999999999999999999999999875443
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-80 Score=708.57 Aligned_cols=499 Identities=17% Similarity=0.202 Sum_probs=414.5
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++ ||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 29 l~~~~~~~a~--pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~a 98 (617)
T 3rg2_A 29 LTDILTRHAA--SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98 (617)
T ss_dssp TTHHHHTTTT--CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence 4567888876 99999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
|++|||++|.+|.+++.++++++++++++++........ ......+...... ..+.+... .....+.+.
T Consensus 99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 168 (617)
T 3rg2_A 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSG-DDFLNTFVTEHSSIRVVQLLND---------SGEHNLQDA 168 (617)
T ss_dssp TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSS-SHHHHHHHHHSTTCCEEEEETC---------CSTTBHHHH
T ss_pred CeEEccCCccccHHHHHHHHhhcCceEEEeccccccccc-HHHHHHHhhcCCccceeeeccc---------ccccchhhh
Confidence 999999999999999999999999999999975321000 0111222222222 22222111 112233333
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH--HH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP--WL 415 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~ 415 (729)
..... .........++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|.++. ++
T Consensus 169 ~~~~~----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 244 (617)
T 3rg2_A 169 INHPA----EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPG 244 (617)
T ss_dssp HHSCC----SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hcccc----cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHH
Confidence 32211 1223345578999999999999999999999999999999999889999999999999998777665 47
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC--CCCCCCCccEEEeecCCCCHhHHHHHH
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLM 493 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~ 493 (729)
++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++.
T Consensus 245 ~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 323 (617)
T 3rg2_A 245 SLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIP 323 (617)
T ss_dssp HHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHH
Confidence 9999999999999865 5778899999999999999999999998775322 233689999999999999999999988
Q ss_pred hccCCCCeeecccccccccccccCCcccccccccccCCC-CCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccc
Q 004815 494 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLN 572 (729)
Q Consensus 494 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~ 572 (729)
..+ +++++|.||+||+++.++...........++|+|+ ++++++|+|++|+++|.|++ |||+|++..+..+ |+++
T Consensus 324 ~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~G-Y~~~ 399 (617)
T 3rg2_A 324 AEI-GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRG-YYKS 399 (617)
T ss_dssp HHT-CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSC-CTTC
T ss_pred HHh-CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccch-hcCC
Confidence 776 48999999999998765544333333456899997 78899999999999999997 9999977766544 4678
Q ss_pred ccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004815 573 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652 (729)
Q Consensus 573 ~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~ 652 (729)
++.|+++|..++ ||||||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..
T Consensus 400 p~~t~~~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~ 472 (617)
T 3rg2_A 400 PQHNASAFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELM 472 (617)
T ss_dssp HHHHHHHBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTT
T ss_pred hhhhhhccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCccc
Confidence 899999997554 9999999999999999999999999999999999999999995 999999999999988877
Q ss_pred CceeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 653 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+ +.++||++..+ ..+..+++++ +++ .||.||+|+.|+++++||+|+||||||++|++++.+
T Consensus 473 ~-~~~~a~vv~~~----~~~~~~l~~~----l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 473 G-EKSCAYLVVKE----PLRAVQVRRF----LREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp E-EEEEEEEEESS----CCCHHHHHHH----HHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred C-eeEEEEEEeCC----CCCHHHHHHH----HHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 7 88999999887 4566776664 666 699999999999999999999999999999998765
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-80 Score=698.60 Aligned_cols=498 Identities=16% Similarity=0.180 Sum_probs=419.8
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
.++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 4 ~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 4 LEQIEKWAAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 3567888899999999999877 99999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 339 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 339 (729)
+++||++|.++.+++.+++++++++++|++....... .. ..++. ...+.++..
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~------------~~--~~~~~-------------~~~~~~~~~ 128 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD------------LP--VRIVS-------------EDNLKDIFF 128 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC------------CS--SEEEE-------------THHHHHHHH
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc------------cc--cceec-------------hhhhhhhcc
Confidence 9999999999999999999999999999986421100 00 00000 011222222
Q ss_pred HhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHH
Q 004815 340 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 419 (729)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~ 419 (729)
... .....+.....++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+
T Consensus 129 ~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 206 (512)
T 3fce_A 129 THK--GNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPS 206 (512)
T ss_dssp HTT--TCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHH
T ss_pred ccc--ccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHH
Confidence 111 111223345678999999999999999999999999999999998889999999999999999999999999999
Q ss_pred hhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccC
Q 004815 420 LLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 497 (729)
Q Consensus 420 L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~ 497 (729)
++.|+++++.+.. .++..+++.|+++++|++.++|+++..++........++++||.+++||+++++++.+++.+.++
T Consensus 207 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~ 286 (512)
T 3fce_A 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFP 286 (512)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred HhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCC
Confidence 9999999998753 36788999999999999999999999998876666677899999999999999999999999888
Q ss_pred CCCeeecccccccccccccCCcc----cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccc
Q 004815 498 YKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 573 (729)
Q Consensus 498 ~~~l~~~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~ 573 (729)
+++++|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+|.+..+..+ |++++
T Consensus 287 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~~ 363 (512)
T 3fce_A 287 KATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVG-YLGSP 363 (512)
T ss_dssp TCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSC-BTTCH
T ss_pred CCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChh-hcCCc
Confidence 89999999999998765443321 12245689999999999999999999999997 9999976655443 46788
Q ss_pred cccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004815 574 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 653 (729)
Q Consensus 574 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 653 (729)
+.|++.|... +|++||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|+++++...+
T Consensus 364 ~~t~~~f~~~---~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~ 438 (512)
T 3fce_A 364 ELTEKAFTMI---DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY 438 (512)
T ss_dssp HHHHHHEEEE---TTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE
T ss_pred hhhhhccccC---CCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc
Confidence 8888888632 36779999999999 79999999999999999999999999999995 9999999999999887776
Q ss_pred ceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhh
Q 004815 654 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 725 (729)
Q Consensus 654 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~ 725 (729)
+.++|+|++.+ +. ..+..++.+.++++|+++||.||+|..|+++++||+|++|||||++|++.+.+..+
T Consensus 439 -~~~~a~vv~~~-~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 439 -DYLLAVVVPGE-HS-FEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEH 507 (512)
T ss_dssp -EEEEEEEEECS-CC-CSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC---
T ss_pred -eEEEEEEecCC-cc-ccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccc
Confidence 88999999887 43 34555677788889999999999999999999999999999999999999987544
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-79 Score=696.56 Aligned_cols=522 Identities=21% Similarity=0.268 Sum_probs=427.5
Q ss_pred CCCcCCCCcchHHhhhhccccCC-----CCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEE
Q 004815 167 GGQWLPGAFVNPAKNCLSVNSKR-----SLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAI 240 (729)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~-----~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai 240 (729)
+..|+.....|...++|++++++ +||++|+++.+. .+..+++||+||+++++++|++|+++ |+++||+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~---~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i 104 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNG---KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAV 104 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECS---SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcC---CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEE
Confidence 45677677778888889888877 999999998542 11234899999999999999999999 9999999999
Q ss_pred ECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcC
Q 004815 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPA 318 (729)
Q Consensus 241 ~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ 318 (729)
+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|+++... +....+....+. .++++..
T Consensus 105 ~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999987532 122222222222 2333321
Q ss_pred CCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHH--HHHHHHhhCCCC
Q 004815 319 KGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK--AAADAWCHMDIR 396 (729)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~--~~~~~~~~~~~~ 396 (729)
.. ..+...+.+++..... ..+.....++++|||+|||||||.||||+++|+ ++. ...+. ..++++
T Consensus 179 ~~-------~~~~~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~ 245 (570)
T 3c5e_A 179 KS-------CDGWLNFKKLLNEAST----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQ 245 (570)
T ss_dssp SC-------CTTSEEHHHHHHHSCS----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCC
T ss_pred cC-------ccccccHHHHhhcccc----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCC
Confidence 11 1123456666543221 122234568999999999999999999999999 444 44444 678899
Q ss_pred CCCEEEEccCcchhhhHH-HHHHHhhcCceEEEeCC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCc
Q 004815 397 KADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 474 (729)
Q Consensus 397 ~~d~~l~~~~~~~~~~~~-~i~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sL 474 (729)
++|++++.+|++|+.+++ .++.+|..|+++++.+. ..++..+++.|+++++|++.++|++++.|.+.. ....++++|
T Consensus 246 ~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~l 324 (570)
T 3c5e_A 246 ASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHL 324 (570)
T ss_dssp TTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTC
T ss_pred CCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccc
Confidence 999999999999999985 68899999999999874 468889999999999999999999999998763 334568899
Q ss_pred cEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCce
Q 004815 475 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGM 554 (729)
Q Consensus 475 r~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~gi 554 (729)
|.+++|||++++++.+++.+.+ +++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|.|+.
T Consensus 325 r~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~-- 400 (570)
T 3c5e_A 325 QNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE-- 400 (570)
T ss_dssp CEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC--
T ss_pred eEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccCCCceEEEECCCCCCCCCCCC--
Confidence 9999999999999999988776 488999999999986554432 223456789999999999999999999999997
Q ss_pred eEEEee-----ccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHH
Q 004815 555 GELALS-----PLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 629 (729)
Q Consensus 555 Gel~v~-----~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE 629 (729)
|||+|. +..+.. .|+++++.|++.|.. +||+|||+|++++||+++|+||+|||||++|+||+|.|||
T Consensus 401 GEl~v~~~~~~g~~v~~-GY~~~~~~t~~~f~~-------~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE 472 (570)
T 3c5e_A 401 GDIGIRVKPIRPIGIFS-GYVDNPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVE 472 (570)
T ss_dssp EEEEEECSSBCCTTCCC-EETTCHHHHHHTEET-------TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHH
T ss_pred CeeEEeccCCCCchhhc-cccCChhHhhhhhcC-------CccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHH
Confidence 999996 333322 246788888888852 3999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCC
Q 004815 630 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATN 709 (729)
Q Consensus 630 ~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~G 709 (729)
++|. +||+|.+|+|++.+++..| +.++|||++.+ +....+.+.+.+.|+++|+++||+||+|..|+++++||+|+||
T Consensus 473 ~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~G 549 (570)
T 3c5e_A 473 NALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLAS-QFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTG 549 (570)
T ss_dssp HHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECG-GGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTC
T ss_pred HHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECC-cccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCc
Confidence 9995 9999999999999988777 88999999876 3211344567778888999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhc
Q 004815 710 KVMRRVLRKQLAQLDQN 726 (729)
Q Consensus 710 KidR~~L~~~~~~~~~~ 726 (729)
||+|++|++.+...+.+
T Consensus 550 Ki~R~~L~~~~~~~s~~ 566 (570)
T 3c5e_A 550 KIQRAKLRDKEWKMSGK 566 (570)
T ss_dssp CBCHHHHHHHHTC----
T ss_pred CCcHHHHHHHHHhhhhc
Confidence 99999999998776544
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-80 Score=701.17 Aligned_cols=482 Identities=19% Similarity=0.201 Sum_probs=404.3
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 40 ~l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 111 (563)
T 1amu_A 40 TIHQLFEEQVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLK 111 (563)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 356778888999999999998776 999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC--CcEEEEcCCCCCcccccCCCCcCHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
+|+++||++|.++.+++.+++++++++++|+++.... ...... ..+..+.. . . +
T Consensus 112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~----------~~~~~~~~~~~~~~~~--~---------~--~- 167 (563)
T 1amu_A 112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH----------LIHNIQFNGQVEIFEE--D---------T--I- 167 (563)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH----------HHTTSCCCSEEEECCC--S---------T--T-
T ss_pred hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhh----------hhhhccccCceeeecc--h---------h--h-
Confidence 9999999999999999999999999999999874321 111111 11111110 0 0 0
Q ss_pred HHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHH
Q 004815 336 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL 415 (729)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 415 (729)
.. ...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.
T Consensus 168 ---~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 240 (563)
T 1amu_A 168 ---KI----REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE 240 (563)
T ss_dssp ---TT----SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH
T ss_pred ---cc----ccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHH
Confidence 00 00011123446789999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHH
Q 004815 416 VYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 493 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~ 493 (729)
++.+|+.|+++++.+.. .++..+++.|+++++|++.++|+++..|... .+++||.+++||+++++++.+++.
T Consensus 241 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~ 314 (563)
T 1amu_A 241 MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWK 314 (563)
T ss_dssp HHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHT
T ss_pred HHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHH
Confidence 99999999999998643 4678899999999999999999999877432 368899999999999999999887
Q ss_pred hccCCCCeeecccccccccccccCCcc--cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccc
Q 004815 494 GRALYKPVIEYCGGTEIGGGFITGSLL--QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 571 (729)
Q Consensus 494 ~~~~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~ 571 (729)
+. ++++|.||+||++++++..... ......++|+|++|++++|+|++|+++|.|+. |||+|++..+..+ |++
T Consensus 315 ~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~ 388 (563)
T 1amu_A 315 EK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARG-YWK 388 (563)
T ss_dssp TT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCE-ETT
T ss_pred hC---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhChh-hCC
Confidence 53 6899999999998755443221 12345689999999999999999999999996 9999966554433 467
Q ss_pred cccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCC
Q 004815 572 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 651 (729)
Q Consensus 572 ~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 651 (729)
+++.|++.|..+|+.+|++||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++.
T Consensus 389 ~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~ 467 (563)
T 1amu_A 389 RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQ 467 (563)
T ss_dssp CHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTT
T ss_pred CchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCC
Confidence 88899999998888778899999999999999999999999999999999999999999995 99999999999999887
Q ss_pred CCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHH
Q 004815 652 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 720 (729)
Q Consensus 652 ~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~ 720 (729)
.+ +.++|||+... ..+.+++++ +++++||.||+|..|+++++||+|+||||||++|++..
T Consensus 468 ~~-~~~~a~vv~~~----~~~~~~l~~----~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 468 EQ-PYLCAYFVSEK----HIPLEQLRQ----FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp SC-EEEEEEEEESS----CCCHHHHHH----HHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred CC-eEEEEEEEeCC----CCCHHHHHH----HHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 77 88999999865 356666665 57789999999999999999999999999999998754
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-80 Score=701.59 Aligned_cols=500 Identities=18% Similarity=0.194 Sum_probs=413.0
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 27 l~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 27 FGDLLRDRAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp HHHHHHHHHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 45678888899999999998766 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
|+++||++|.++.+++.+++++++++++|+++.... .........+....+. ..+++..... .+.++
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 166 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEAE-----------EFLPL 166 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCCT-----------TSEEG
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCcc-----------chhhh
Confidence 999999999999999999999999999999875310 0000112222222222 1122211100 01111
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH--H
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW--L 415 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~ 415 (729)
... ...........++++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++. .
T Consensus 167 ~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 242 (539)
T 1mdb_A 167 EDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPG 242 (539)
T ss_dssp GGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hhc----cccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHH
Confidence 110 0111122345689999999999999999999999999999988888889999999999999999999885 6
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.
T Consensus 243 ~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 321 (539)
T 1mdb_A 243 VLGVLYAGGRVVLSPS-PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAV 321 (539)
T ss_dssp HHHHHHTTCEEEECSS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHH
T ss_pred HHHHHHhCCEEEECCC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHH
Confidence 8999999999999864 678899999999999999999999999987654445678999999999999999999988877
Q ss_pred cCCCCeeecccccccccccccCCcccccccccccCCCCC-cEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMG-CKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~-~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~ 574 (729)
+ +++++|.||+||+++.+............++|+|+++ .+++|+|++|+++|.|+. |||+|++..+..+ |+++++
T Consensus 322 ~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~~~ 397 (539)
T 1mdb_A 322 F-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRG-YYKAEE 397 (539)
T ss_dssp T-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSS-CTTCHH
T ss_pred h-CCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchh-hcCChh
Confidence 6 4889999999997654333222222345789999976 489999999999999997 9999976655443 467888
Q ss_pred ccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 575 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
.|++.|..++ ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..|
T Consensus 398 ~t~~~f~~~g------~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g- 469 (539)
T 1mdb_A 398 HNAASFTEDG------FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG- 469 (539)
T ss_dssp HHHHHBCTTS------CEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-
T ss_pred hhhhhccCCC------CeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC-
Confidence 8888887433 9999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred eeEEEEEEecCCCCCCCChHHHHHHHHHHHHhh-CCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK-LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~-L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+.++|||++++ . ..+.+++++ +++++ ||.||+|+.|+++++||+|+||||||++|++++.+
T Consensus 470 ~~~~a~vv~~~-~--~~~~~~l~~----~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 470 ERSCVFIIPRD-E--APKAAELKA----FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp EEEEEEEEESS-S--CCCHHHHHH----HHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred ceEEEEEEECC-C--CCCHHHHHH----HHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHH
Confidence 88999999875 2 356666666 46676 99999999999999999999999999999999876
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-80 Score=694.64 Aligned_cols=495 Identities=22% Similarity=0.207 Sum_probs=410.4
Q ss_pred hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
....++|.++++++||++|+++.+.. .++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 16 ~~l~~~l~~~a~~~p~~~A~~~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 16 KNIGWMLRQRATVSPRLQAYVEPSTD------VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp GCHHHHHHHHHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCcC------ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 34567788899999999999986542 489999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCH
Q 004815 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISW 334 (729)
Q Consensus 257 ~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~ 334 (729)
++|+++||+||.++.+++.+++++++++++|+++... +....+...... ..+.+. ....+
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~ 151 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSL 151 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHH
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccH
Confidence 9999999999999999999999999999999987532 112222211110 000000 01122
Q ss_pred HHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH
Q 004815 335 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW 414 (729)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 414 (729)
.+..... ....+.....++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++.
T Consensus 152 ~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 152 AERLRSA----AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp HHHHHHC----CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHH
T ss_pred HHHhhcc----CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHH
Confidence 3332221 122334456789999999999999999999999999999999888899999999999999999999998
Q ss_pred HHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 415 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 415 ~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
.++.+++.|+++++.+. .++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++..
T Consensus 228 ~~~~~~~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~ 306 (517)
T 3r44_A 228 TVIFSAMRGVTLISMPQ-FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA 306 (517)
T ss_dssp HHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHHhcCeEEEEeCC-CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHh
Confidence 76666669999999864 68899999999999999999999999998765444566889999999999999999998876
Q ss_pred ccCCCCeeecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccc
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 573 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~ 573 (729)
. +++++|.||+||+++.++..... .....+++|+|+++++++|+|++|++++.| . |||+|++..+..+ |++++
T Consensus 307 ~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~G-Y~~~p 380 (517)
T 3r44_A 307 K--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKE-YWNRP 380 (517)
T ss_dssp T--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSE-ETTCH
T ss_pred c--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhh-hCCCh
Confidence 5 58999999999998765443332 234567899999999999999999999998 4 9999976655543 46788
Q ss_pred cccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004815 574 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 653 (729)
Q Consensus 574 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 653 (729)
+.|++.|.. +||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..|
T Consensus 381 ~~t~~~f~~-------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g 452 (517)
T 3r44_A 381 EATRDAFDN-------GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG 452 (517)
T ss_dssp HHHHHTEET-------TEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE
T ss_pred hhhHhhhcC-------CCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC
Confidence 889888842 39999999999999999999999999999999999999999995 9999999999999988877
Q ss_pred ceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 654 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 654 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+.++++| ..+ +. ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++++.+
T Consensus 453 -~~~~a~v-~~~-~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 513 (517)
T 3r44_A 453 -EIAAAIV-VAD-QN-EVSEQQIVE----YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSA 513 (517)
T ss_dssp -EEEEEEE-EEC-TT-TCCHHHHHH----HHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGG
T ss_pred -ceEEEEE-ECC-CC-CCCHHHHHH----HHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHh
Confidence 7788888 444 33 456666665 5778899999999999999999999999999999999876
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-79 Score=690.81 Aligned_cols=499 Identities=16% Similarity=0.131 Sum_probs=410.1
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 6 l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 6 MIDSIEQFAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp HHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 34668888899999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
|+++||++|.++.+++.+++++++++++|+++......... ....+.++.
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~------------------------------~~~~~~~~~ 127 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI------------------------------SLVSLSEIE 127 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS------------------------------EEEEHHHHH
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccC------------------------------cccchhhhh
Confidence 99999999999999999999999999999987532111000 011223322
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh--CCCCCCCEEEEccCcchhhhHHHH
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIVAWPTNLGWMMGPWLV 416 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~i 416 (729)
..... ...........++++|||+|||||||.||||+++|+++++.+.+.... +++.+++++++..+++|+.+.+.+
T Consensus 128 ~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 206 (521)
T 3l8c_A 128 SAKLA-EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYW 206 (521)
T ss_dssp HHHHH-TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHH
T ss_pred hcccc-cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHH
Confidence 22111 111222345678999999999999999999999999999888777665 788899999999999999999989
Q ss_pred HHHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 417 YASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
+.++..|+++++.+.. .++..+++.|.++++|++.++|+++..+.........++++||.+++||+++++++.+++.+
T Consensus 207 ~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~ 286 (521)
T 3l8c_A 207 APTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFE 286 (521)
T ss_dssp HHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHH
Confidence 9999999999998753 36788999999999999999999999998876656677899999999999999999999998
Q ss_pred ccCCCCeeecccccccccccccCCcc----cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccc
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 570 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~ 570 (729)
.+++++++|.||+||+++.++..... ......++|+|++|++++|+|++|+++|.|+. |||+|.+..+..+ |+
T Consensus 287 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~ 363 (521)
T 3l8c_A 287 RFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKG-YL 363 (521)
T ss_dssp HCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSC-BT
T ss_pred HCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChh-hc
Confidence 88889999999999998765443221 12245689999999999999999999999997 9999976655443 46
Q ss_pred ccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCC
Q 004815 571 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650 (729)
Q Consensus 571 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 650 (729)
++++.|++.|... ++.+||+|||+|++++||+++|+||+||+||++|++|+|.|||++|. +||+|.+|+|++.++.
T Consensus 364 ~~~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~ 439 (521)
T 3l8c_A 364 NNPEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNK 439 (521)
T ss_dssp TCHHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSS
T ss_pred CCchHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecC
Confidence 7888888888643 35679999999999999999999999999999999999999999995 9999999999998765
Q ss_pred CCCceeEEEEEEecCCCCCC--CChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhh
Q 004815 651 DGGPEQLTIVVVFKDSNYTP--PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724 (729)
Q Consensus 651 ~~g~~~l~a~vv~~~~~~~~--~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~ 724 (729)
..+.+.++|+|++++ +... ....++.+.|+++|+++||.||+|..|+++++||+|+||||||++|++++.+..
T Consensus 440 ~~~~~~~~a~vv~~~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 440 EHKVQNLLAYIVVKD-GVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp SCC---CEEEEEECT-TSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred CCCceEEEEEEEecC-ccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 544478999999987 4311 122356777888999999999999999999999999999999999999987633
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-80 Score=709.01 Aligned_cols=488 Identities=20% Similarity=0.227 Sum_probs=322.6
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 76 ~l~~~l~~~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 147 (570)
T 4gr5_A 76 CVHELFEAQAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLK 147 (570)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 456788999999999999999776 999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
+|+++||++|.++.+++.+++++++++++|+++..... +.....++... . .
T Consensus 148 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~-~---------------~ 198 (570)
T 4gr5_A 148 AGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------------LTGTTTLYVED-E---------------A 198 (570)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------------SCSSEEEECCC------------------
T ss_pred HCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------------ccCCcceeeec-c---------------c
Confidence 99999999999999999999999999999998753211 11111111000 0 0
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~ 417 (729)
... ...........++++|||+|||||||.||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+.+.++
T Consensus 199 ~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 273 (570)
T 4gr5_A 199 ASD----APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELF 273 (570)
T ss_dssp ---------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHH
T ss_pred ccc----ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHH
Confidence 000 01112233467899999999999999999999999999876654 3567899999999999999999988999
Q ss_pred HHhhcCceEEEeCC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 418 ASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 418 ~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
.+|+.|+++++.+. ..++..+++.|+++++|++.++|+++..|++... .++++||.+++|||+++++..+++.+.+
T Consensus 274 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 350 (570)
T 4gr5_A 274 GALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDH 350 (570)
T ss_dssp HHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHC
T ss_pred HHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhC
Confidence 99999999999864 3578899999999999999999999999987642 3478999999999999999999988888
Q ss_pred CCCCeeecccccccccccccCCcc---cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 573 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~ 573 (729)
++++++|.||+||+++.++..... ......++|+|++|++++|+|++++++|.|+. |||+|.+..+..+ |++++
T Consensus 351 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~G-Y~~~~ 427 (570)
T 4gr5_A 351 PALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAHG-YVSRP 427 (570)
T ss_dssp TTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCE-ETTCH
T ss_pred CCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccchh-cCCCc
Confidence 888999999999998755433221 12334679999999999999999999999996 9999966555433 46788
Q ss_pred cccccccccccC--CCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCC
Q 004815 574 NHYDVYFSGMPS--RNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 651 (729)
Q Consensus 574 ~~~~~~f~~~p~--~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 651 (729)
+.|++.|..+|+ .+|.+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++.
T Consensus 428 ~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~ 506 (570)
T 4gr5_A 428 ALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRL 506 (570)
T ss_dssp HHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------------------------
T ss_pred hhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCC
Confidence 899999988775 346789999999999999999999999999999999999999999995 99999999999998877
Q ss_pred CCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHH
Q 004815 652 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 720 (729)
Q Consensus 652 ~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~ 720 (729)
++ +.++|||+.+..+. ..+.+++++ +|+++||.||+|..|+++++||+|++|||||++|++.-
T Consensus 507 ~~-~~~~a~vv~~~~~~-~~~~~~l~~----~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 507 GD-KQLVAYVVAERADA-PPDAAELRR----HVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CC-eEEEEEEEecCCCC-CcCHHHHHH----HHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 77 88999999875122 234445544 67888999999999999999999999999999998753
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-78 Score=680.19 Aligned_cols=487 Identities=20% Similarity=0.191 Sum_probs=401.0
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++||++|+++.+.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 4 l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 4 VNEMLRRAATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp HHHHHHHHHHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 456788888999999999986211 38999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEE--ecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFT--QDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|++++|+||.++.+++.+++++++++++|+ ++.. ...+........ ++ .+.+
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~-~~----------------~~~~ 131 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV---------ADAIFQSGSGAR-II----------------FLGD 131 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CH---------HHHHHHHCCCCE-EE----------------EGGG
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhh---------hhhhhhccccce-eE----------------Eecc
Confidence 999999999999999999999999999999 5431 111111111111 11 1111
Q ss_pred HHHHhhcc-ccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCC--CCCCEEEEccCcchhhhH
Q 004815 337 FLERVRKL-KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDI--RKADIVAWPTNLGWMMGP 413 (729)
Q Consensus 337 ~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~ 413 (729)
+....... .....+.....++++|||+|||||||.||||+++|+++.+.+.+....+++ +++|++++.+|++|++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~ 211 (504)
T 1t5h_X 132 LVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211 (504)
T ss_dssp TEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHH
T ss_pred hhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchH
Confidence 11110000 001111134568999999999999999999999999999988888778888 889999999999999998
Q ss_pred -HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcC-C-CCCCCCCCccEEEeecCCCCHhHHH
Q 004815 414 -WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN-C-IDGYDWSSIRCFGSTGEASNVDEYL 490 (729)
Q Consensus 414 -~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~-~-~~~~~l~sLr~v~~gGe~l~~~~~~ 490 (729)
..++.+|+.|+++++.+. .++..+++.|+++++|++.++|++++.|.+.. . ....++++||.+++|||++++++.+
T Consensus 212 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~ 290 (504)
T 1t5h_X 212 FAVLVAALALDGTYVVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLE 290 (504)
T ss_dssp TTTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHH
T ss_pred HHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHH
Confidence 678899999999999875 68889999999999999999999999998764 2 2345689999999999999999999
Q ss_pred HHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCC---CccCCCCCceeEEEee-ccccCC
Q 004815 491 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG---CPIPQNVPGMGELALS-PLIFGA 566 (729)
Q Consensus 491 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g---~~~p~g~~giGel~v~-~~~~~~ 566 (729)
++.+.++ .+++|.||+||+++.+. .. ....+++|.|+++++++|+|+++ +++|.|+. |||+|+ +..+..
T Consensus 291 ~~~~~~~-~~~~~~YG~TE~~~~~~--~~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~ 363 (504)
T 1t5h_X 291 TVHQHLP-GEKVNIYGTTEAMNSLY--MR--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFV 363 (504)
T ss_dssp HHHHHCC-SEEEEEEEETTTEEEEE--EE--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCC
T ss_pred HHHHhcC-cceeeeecccccccccc--cc--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeec
Confidence 9988775 78999999999843221 11 23457899999999999999888 99999997 999997 544432
Q ss_pred CcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEe
Q 004815 567 SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIG 646 (729)
Q Consensus 567 ~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~ 646 (729)
.|+++++.|++.|.. | ||+|||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++
T Consensus 364 -GY~~~~~~t~~~f~~-----g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~ 434 (504)
T 1t5h_X 364 -GYLNQPQATAEKLQD-----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIG 434 (504)
T ss_dssp -CBTTCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEE
T ss_pred -eecCCchhhhhhhcC-----C--ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEE
Confidence 256788888888831 3 9999999999999999999999999999999999999999995 999999999999
Q ss_pred ecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHH
Q 004815 647 VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721 (729)
Q Consensus 647 ~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~ 721 (729)
.+++..| +.++|||++++ +. ..+.+++++ ++++ +||.||+|+.|+++++||+|+||||||++|++++.
T Consensus 435 ~~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 435 LADQRWG-QSVTACVVPRL-GE-TLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EECSSSS-EEEEEEEEECT-TC-CCCHHHHHH----HHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred eecCCCC-cEEEEEEEecC-Cc-CcCHHHHHH----HHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9998887 89999999987 54 456666665 5777 89999999999999999999999999999998864
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-79 Score=698.10 Aligned_cols=505 Identities=19% Similarity=0.186 Sum_probs=327.7
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 32 l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 32 LTRILTVGVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp TTHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 34678888899999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
|++++|++|.++.+++.+++++++++++|+++..... ........+...... ..+.+.... .....+.++
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 174 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ--------ATDFGLLDW 174 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC--------TTSEEHHHH
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC--------ccccchhhh
Confidence 9999999999999999999999999999998753210 000112222222222 222222111 012233444
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH--H
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW--L 415 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~ 415 (729)
...... .........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.++.. .
T Consensus 175 ~~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 251 (544)
T 3o83_A 175 IETPAE---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPG 251 (544)
T ss_dssp HHSCCS---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hhcccc---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHH
Confidence 332211 11122345689999999999999999999999999999999998999999999999999998887764 6
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
++.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++||+++++++.+++.+.
T Consensus 252 ~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 330 (544)
T 3o83_A 252 ALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEV 330 (544)
T ss_dssp HHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHH
T ss_pred HHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 8999999999999875 578899999999999999999999999988765555668899999999999999999998877
Q ss_pred cCCCCeeecccccccccccccCCcccccccccccCCC-CCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~ 574 (729)
+ +++++|.||+||+++.++...........++|+|+ ++++++|+|++|+++|.|+. |||+|++..+..+ |+++++
T Consensus 331 ~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~~~ 406 (544)
T 3o83_A 331 L-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCG-YYQSPE 406 (544)
T ss_dssp H-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSC-CTTCHH
T ss_pred h-CCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchh-hcCChh
Confidence 6 48999999999998655443333333457899996 89999999999999999997 9999976655443 467888
Q ss_pred ccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 575 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
.|++.|..+ +||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..|
T Consensus 407 ~t~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g- 478 (544)
T 3o83_A 407 HNSQVFDED------NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG- 478 (544)
T ss_dssp HHHHHBCTT------CCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------
T ss_pred hhhhhCCCC------CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC-
Confidence 898888643 39999999999999999999999999999999999999999995 9999999999999998887
Q ss_pred eeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
+.++|+|+.++ . ..+.+++++ ++++ .||.||+|..|+++++||+|+||||||++|++++...
T Consensus 479 ~~~~a~vv~~~-~--~~~~~~l~~----~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 479 EKSCAFIVSRN-P--ELKAVVLRR----HLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ceEEEEEEeCC-C--CCCHHHHHH----HHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 88999999876 2 234455555 4666 7999999999999999999999999999999998753
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-78 Score=684.55 Aligned_cols=502 Identities=18% Similarity=0.150 Sum_probs=415.5
Q ss_pred Hhh-hhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 179 AKN-CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 179 ~~~-~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
..+ +|.++++++ |++|+++.+.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 27 l~~~~l~~~~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 27 TQLRKYMERYAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHHHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred HHHHHHHhhhccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 345 566677778 99999984211 2899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC--CcEEEEcCCCCCcccccCCCCcCHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
+|++++|++|.++.+++.+++++++++++|+++... .....+....+ ..++.+... . ...+...|.
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~ 167 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSK--V----DYRGYQCLD 167 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCS--S----CBTTBCBHH
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCc--c----cccccccHH
Confidence 999999999999999999999999999999987532 22222222332 122222111 0 001233566
Q ss_pred HHHHHhhccccCccccccC------CCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh---CCCCCCCEEEEccC
Q 004815 336 DFLERVRKLKENEFAAVEQ------PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTN 406 (729)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~ 406 (729)
++...... ...+.... .++++|||+|||||||.||||+++|+++.+.+.+.... ++++++|++++.+|
T Consensus 168 ~~~~~~~~---~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 244 (548)
T 2d1s_A 168 TFIKRNTP---PGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVP 244 (548)
T ss_dssp HHHHHTSC---TTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred HHHhcCcc---ccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEecc
Confidence 66654321 00111122 23899999999999999999999999999988877666 78899999999999
Q ss_pred cchhhhHHH-HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCC
Q 004815 407 LGWMMGPWL-VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 485 (729)
Q Consensus 407 ~~~~~~~~~-i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~ 485 (729)
++|+++++. ++.++ .|+++++.+. .++..+++.|+++++|++.++|++++.|.+.......++++||.+++||++++
T Consensus 245 ~~h~~g~~~~~~~~l-~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 322 (548)
T 2d1s_A 245 FHHGFGMFTTLGYLI-CGFRVVMLTK-FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLS 322 (548)
T ss_dssp TTSHHHHHHHHHHHH-TTCEEEECCC-CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHh-cCcEEEEcCC-CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCC
Confidence 999999865 56677 9999999864 68899999999999999999999999999876555567899999999999999
Q ss_pred HhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeecccc
Q 004815 486 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIF 564 (729)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~ 564 (729)
+++.+++.+.+++++++|.||+||++..++... ......+++|+|+++++++|+| ++|+++|.|+. |||+|++..+
T Consensus 323 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v 399 (548)
T 2d1s_A 323 KEVGEAVARRFNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPML 399 (548)
T ss_dssp HHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC-TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTS
T ss_pred HHHHHHHHHHcCCCceeeccccccccceeeecC-cccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHH
Confidence 999999998887789999999999987655432 2234567999999999999999 78999999997 9999976655
Q ss_pred CCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEE
Q 004815 565 GASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAA 644 (729)
Q Consensus 565 ~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~V 644 (729)
..+ |+++++.|++.|..+ +||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. +||+|.+|+|
T Consensus 400 ~~G-Y~~~~~~t~~~f~~~------g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V 471 (548)
T 2d1s_A 400 MKG-YVNNPEATKELIDEE------GWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGV 471 (548)
T ss_dssp CSE-ETTCHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEE
T ss_pred hhh-hcCChHHhhhcccCC------cEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH-hCCCccEEEE
Confidence 443 467888888888532 39999999999999999999999999999999999999999995 9999999999
Q ss_pred EeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccc-eEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 645 IGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVS-HVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 645 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~-~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++.+++..| +.++|+|++++ +. ..+.+++++ +++++|+.|++|. .|+++++||+|++||++|++|++++.+
T Consensus 472 ~~~~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 472 AGVPDPVAG-ELPGAVVVLES-GK-NMTEKEVMD----YVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp EEEEETTTE-EEEEEEEEECT-TC-CCCHHHHHH----HHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred EEEEcCCCC-eeeEEEEEEcC-CC-CCCHHHHHH----HHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhh
Confidence 999988777 88999999887 54 456666655 5788999999999 999999999999999999999999875
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-79 Score=741.23 Aligned_cols=561 Identities=17% Similarity=0.160 Sum_probs=336.8
Q ss_pred CHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeEEE
Q 004815 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIR 197 (729)
Q Consensus 118 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~ 197 (729)
+.++.++.+|++|..++..+++.+......+.....-.+. ..... -.......++|.++++++||++|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~p~~~tl~~~l~~~a~~~pd~~Al~ 81 (979)
T 3tsy_A 12 SGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK---------LPDIY-IPNHLSLHDYIFQNISEFATKPCLI 81 (979)
T ss_dssp ---------------------------------CCCBCCS---------SCCCC-CCTTSCHHHHHTTTGGGTTTSEEEE
T ss_pred cCcccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC---------CCCCC-CCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 3499999999999999999988764333322222111111 01111 1112345678889999999999999
Q ss_pred EeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHH
Q 004815 198 WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277 (729)
Q Consensus 198 ~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~ 277 (729)
+...+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||+||.++.+++.++
T Consensus 82 ~~~~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~ 155 (979)
T 3tsy_A 82 NGPTG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155 (979)
T ss_dssp ETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHH
T ss_pred ECCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHH
Confidence 86321 289999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCC
Q 004815 278 LRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVE 357 (729)
Q Consensus 278 l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (729)
++++++++||+++... +....+.......++.+... . ......+...+.++...... .....+.....++
T Consensus 156 l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 225 (979)
T 3tsy_A 156 AKASNTKLIITEARYV------DKIKPLQNDDGVVIVCIDDN-E--SVPIPEGCLRFTELTQSTTE-ASEVIDSVEISPD 225 (979)
T ss_dssp HHHHTEEEEEECSTTT------TTSHHHHHTSCCEEEECCCC-T--TSCCCTTEEEGGGTSSCCSG-GGGGSCCSCCCTT
T ss_pred HHHcCCeEEEEChHHH------HHHHHHhhcCCceEEEeCCc-c--cccCCcccccHHHHhhcccc-ccccCCcCCCCcc
Confidence 9999999999998543 22233332222223332211 1 11111223334433322111 1112233456789
Q ss_pred CeeEEEeccCCCCCCceEEeCCchHHHHHHHHHh----hCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCC
Q 004815 358 AFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGS 432 (729)
Q Consensus 358 ~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~ 432 (729)
++|||+|||||||+||||+++|+++++.+.+... .+++.++|++++.+|++|++++ ..++.+|..|+++++.+.
T Consensus 226 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~- 304 (979)
T 3tsy_A 226 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPK- 304 (979)
T ss_dssp SEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSS-
T ss_pred ceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCC-
Confidence 9999999999999999999999999988776543 4578899999999999999998 457899999999999864
Q ss_pred CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeeccccccccc
Q 004815 433 PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGG 512 (729)
Q Consensus 433 ~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~ 512 (729)
.++..+++.|+++++|++.++|+++..|.+.......++++||.+++||+++++++.+++.+.+++++++|.||+||+++
T Consensus 305 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~ 384 (979)
T 3tsy_A 305 FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP 384 (979)
T ss_dssp CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCS
T ss_pred CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhH
Confidence 67889999999999999999999999999887666777899999999999999999999998888899999999999987
Q ss_pred ccccCC----cccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCC
Q 004815 513 GFITGS----LLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRN 587 (729)
Q Consensus 513 ~~~~~~----~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~ 587 (729)
+++... .......+++|+|++|++++|+| ++|+++|.|++ |||+|++..+..+ |+++++.|++.|..+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~G-Y~~~p~~t~~~f~~~---- 457 (979)
T 3tsy_A 385 VLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKG-YLNNPAATAETIDKD---- 457 (979)
T ss_dssp EEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSE-ETTCHHHHHHHBCTT----
T ss_pred HHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCcccc-ccCChhhhhhhccCC----
Confidence 544332 12234567899999999999999 55999999997 9999976665543 467888898888643
Q ss_pred CceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCC
Q 004815 588 GQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSN 667 (729)
Q Consensus 588 g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~ 667 (729)
+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++|||+..+ +
T Consensus 458 --g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv~~~-~ 532 (979)
T 3tsy_A 458 --GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVVKSK-D 532 (979)
T ss_dssp --SCEEEEEEEEECTTSCEEEEEESCC-----------------------------------------------------
T ss_pred --CcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEEEEEEECC-C
Confidence 39999999999999999999999999999999999999999995 9999999999999988777 88999999876 4
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 668 YTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 668 ~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
. ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++++.+
T Consensus 533 ~-~~~~~~l~~----~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 582 (979)
T 3tsy_A 533 S-ELSEDDVKQ----FVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLAN 582 (979)
T ss_dssp -------------------------------------------------------
T ss_pred C-CCCHHHHHH----HHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHh
Confidence 3 345555555 6788999999999999999999999999999999998875
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-79 Score=688.66 Aligned_cols=497 Identities=17% Similarity=0.153 Sum_probs=316.7
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 8 l~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 79 (509)
T 3ivr_A 8 LADVYRRNAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALI 79 (509)
T ss_dssp HHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 45778889999999999999776 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
|++++|+||.++.+++.+++++++++++|+++... ...............++.... ....+.++.
T Consensus 80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 144 (509)
T 3ivr_A 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFK 144 (509)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGG
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHh
Confidence 99999999999999999999999999999987532 111111122222111111111 111111111
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHH
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~ 418 (729)
... .....+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..++.
T Consensus 145 ~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 221 (509)
T 3ivr_A 145 DLA---SDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT 221 (509)
T ss_dssp GTC---CCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hcc---CCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHH
Confidence 100 11122334567899999999999999999999999999999999989999999999999999999999987777
Q ss_pred HhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCC
Q 004815 419 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 498 (729)
Q Consensus 419 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~ 498 (729)
+++.|++.++.. ..++..+++.|+++++|++.++|+++..|++.. ...++++||.++.+|++ +..+++...+++
T Consensus 222 ~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~ 295 (509)
T 3ivr_A 222 LQQAGGASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPN 295 (509)
T ss_dssp HHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTT
T ss_pred HHHhCCcEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCC
Confidence 777777777766 578899999999999999999999999998875 44568899999999987 777788888878
Q ss_pred CCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccccc
Q 004815 499 KPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 578 (729)
Q Consensus 499 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~ 578 (729)
++++|.||+||++++++..... ....++|+|++|++++|+|++|+++|.|+. |||+|++..+..+ |+++++.|++
T Consensus 296 ~~~~~~YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~g-Y~~~~~~t~~ 370 (509)
T 3ivr_A 296 ATFWATFGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKG-YWNNAAATQH 370 (509)
T ss_dssp CEEEEEEEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCE-ETTCHHHHHH
T ss_pred CeEEcccCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCcccc-ccCCHHHhHH
Confidence 9999999999998765543322 223459999999999999999999999997 9999976655443 4678888888
Q ss_pred ccccccCCCCceeEEeCceEEEecCceEEEEccc--CCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCcee
Q 004815 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA--DDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQ 656 (729)
Q Consensus 579 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~--d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 656 (729)
.|.. +||+|||+|++++||+++|+||. ||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.
T Consensus 371 ~f~~-------g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~-~~ 441 (509)
T 3ivr_A 371 AFRN-------GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS-EA 441 (509)
T ss_dssp HTGG-------GSEEEEEEEEECTTSCEEEEEEC----------------------------------------------
T ss_pred Hhhc-------CCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-cE
Confidence 8852 39999999999999999999999 999999999999999999995 9999999999999988877 88
Q ss_pred EEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhhcC
Q 004815 657 LTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQNS 727 (729)
Q Consensus 657 l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~~~ 727 (729)
++|+|++.+ +. ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++++.+..++.
T Consensus 442 ~~a~v~~~~-~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 442 IKAVCVCKP-GE-SIAADALAE----FVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEEeCC-CC-CCCHHHHHH----HHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 999999876 44 345555555 677889999999999999999999999999999999998866554
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-79 Score=690.58 Aligned_cols=501 Identities=20% Similarity=0.210 Sum_probs=375.8
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|+++++++||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 20 l~~~l~~~a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 20 LWDFLERAAALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp THHHHHHHHHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 45678888889999999996321 12248999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-c-EEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-L-AIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|+++||++|.++.+++.+++++++++++|+++... +....+...++. . ++++.... ..+...+.+
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 162 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEE 162 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHH
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHH
Confidence 99999999999999999999999999999987532 122222222222 1 22222110 012234444
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHH--HhhCCCCCCCEEEEccCcchhhhHH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA--WCHMDIRKADIVAWPTNLGWMMGPW 414 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~ 414 (729)
+..... ......+++++||+|||||||.||||+++|+++++..... ...++++++|++++.+|++|+.++.
T Consensus 163 ~~~~~~-------~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 235 (541)
T 1v25_A 163 ALGEEA-------DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC 235 (541)
T ss_dssp HCCSCC-------CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT
T ss_pred HhhccC-------CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH
Confidence 432111 1134567899999999999999999999999998776653 3457889999999999999999987
Q ss_pred HHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 415 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 415 ~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
.++.+++.|+++++.+...++..+++.|+++++|++.++|+++..|++.......++++||.+++||+++++++.+++ .
T Consensus 236 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~ 314 (541)
T 1v25_A 236 LPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-E 314 (541)
T ss_dssp HHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-H
T ss_pred HHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-H
Confidence 788999999999998765688999999999999999999999999987643344568899999999999999999988 4
Q ss_pred ccCCCCeeecccccccccccccCCccc----------ccccccccCCCCCcEEEEEcCCCCccCCC--CCceeEEEeecc
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLLQ----------AQSLAAFSTPAMGCKLFILGNDGCPIPQN--VPGMGELALSPL 562 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~v~d~~g~~~p~g--~~giGel~v~~~ 562 (729)
.+ +++++|.||+||++..++...... .....++|+|++|++++|+|++|+++|.+ +. |||+|++.
T Consensus 315 ~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~--GEl~v~g~ 391 (541)
T 1v25_A 315 RM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL--GEVQLKGP 391 (541)
T ss_dssp HT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCC--EEEEEEST
T ss_pred Hh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcc--eEEEEeCc
Confidence 44 588999999999987655443221 12347899999999999999999999853 44 99999766
Q ss_pred ccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeee
Q 004815 563 IFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLET 642 (729)
Q Consensus 563 ~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a 642 (729)
.+..+ |+++++.|++.|..+ | ||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. .||+|.+|
T Consensus 392 ~v~~G-Y~~~p~~t~~~f~~~----g--~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a 463 (541)
T 1v25_A 392 WITGG-YYGNEEATRSALTPD----G--FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEA 463 (541)
T ss_dssp TSBSS-CBTCHHHHHTTBCTT----S--CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------
T ss_pred chhcc-ccCChhhhhhhccCC----C--CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEE
Confidence 55443 467888898888642 2 9999999999999999999999999999999999999999995 99999999
Q ss_pred EEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHH
Q 004815 643 AAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721 (729)
Q Consensus 643 ~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~ 721 (729)
+|++.+++..+ +.++|||+++. . ..+.+++++ ++++ +||.||+|+.|+++++||+|+||||+|++|++++.
T Consensus 464 ~Vv~~~~~~~~-~~~~a~vv~~~-~--~~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 535 (541)
T 1v25_A 464 AVVAIPHPKWQ-ERPLAVVVPRG-E--KPTPEELNE----HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYK 535 (541)
T ss_dssp CEEEEECSSSS-EEEEECC--------------------------CCCTTTSCSBC--------------CCTTHHHHST
T ss_pred EEEEecCCCcC-ceEEEEEEECC-C--CCCHHHHHH----HHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHH
Confidence 99999998887 88999998763 2 234455555 4667 89999999999999999999999999999999876
Q ss_pred hh
Q 004815 722 QL 723 (729)
Q Consensus 722 ~~ 723 (729)
+.
T Consensus 536 ~~ 537 (541)
T 1v25_A 536 NY 537 (541)
T ss_dssp TS
T ss_pred Hh
Confidence 53
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-79 Score=693.76 Aligned_cols=512 Identities=18% Similarity=0.155 Sum_probs=323.0
Q ss_pred HHhhhhccccCCCCCCeEEEEe-ecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWC-DEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~-~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
...++|.++++++|+++|++.. +. ...+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 21 tl~~~l~~~a~~~p~~~a~~a~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 96 (550)
T 3rix_A 21 TAGEQLHKAMKRYALVPGTIAFTDA----HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 96 (550)
T ss_dssp CHHHHHHHHHHHHHTSTTCEEEEET----TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCceEEEeeec----CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHH
Confidence 3456788888899999997621 11 011389999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHH
Q 004815 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 257 ~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
++|++++|++|.++.+++.+++++++++++|+++... .....+....+. ..+++...... ..+...+.
T Consensus 97 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 165 (550)
T 3rix_A 97 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD-----YQGFQSMY 165 (550)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC-----BTTBCBHH
T ss_pred HcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCcc-----ccCcccHH
Confidence 9999999999999999999999999999999987532 223333333332 22222211111 12345666
Q ss_pred HHHHHhhcccc--Cc-cccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh---CCCCCCCEEEEccCcch
Q 004815 336 DFLERVRKLKE--NE-FAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTNLGW 409 (729)
Q Consensus 336 ~~~~~~~~~~~--~~-~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~ 409 (729)
++......... .. .+.....++++|||+|||||||.||||+++|+++++.+.+.... +++.++|++++.+|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 245 (550)
T 3rix_A 166 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 245 (550)
T ss_dssp HHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHH
Confidence 66654432111 01 11122346789999999999999999999999999887776554 57889999999999999
Q ss_pred hhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHH
Q 004815 410 MMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 489 (729)
Q Consensus 410 ~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~ 489 (729)
+++++.++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.
T Consensus 246 ~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~ 324 (550)
T 3rix_A 246 GFGMFTTLGYLICGFRVVLMYR-FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVG 324 (550)
T ss_dssp HHHHHHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHH
Confidence 9999888999999999999864 678899999999999999999999999998876667778999999999999999999
Q ss_pred HHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCc
Q 004815 490 LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 490 ~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~ 568 (729)
+++.+.++...++|.||+||+++.++.... .....+++|+|+++++++|+| ++|+++|.|+. |||+|++..+..+
T Consensus 325 ~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G- 400 (550)
T 3rix_A 325 EAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSG- 400 (550)
T ss_dssp HHHHHHTTCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSE-
T ss_pred HHHHHHcCCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcchh-
Confidence 999888875569999999999976554433 334568999999999999999 56999999997 9999976655443
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeec
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 648 (729)
|+++++.|+..|..+ +||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++
T Consensus 401 Y~~~~~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~ 473 (550)
T 3rix_A 401 YVNNPEATNALIDKD------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLP 473 (550)
T ss_dssp ETTCHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEC---------------------------------------
T ss_pred hcCChhhhhhhcCCC------CCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHH-hCCCcceEEEEEee
Confidence 467888888888543 39999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCcc-ceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 649 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 649 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P-~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
++..| +.++|+|+.++ +. ..+.+++++ +++++|++|+.| ..|+++++||+|+||||||++|++++.+.
T Consensus 474 ~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 542 (550)
T 3rix_A 474 DDDAG-ELPAAVVVLEH-GK-TMTEKEIVD----YVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA 542 (550)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cCCCC-ceEEEEEEecC-CC-CCCHHHHHH----HHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhh
Confidence 98887 88999999887 54 355555655 567778887655 57999999999999999999999999873
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-77 Score=676.53 Aligned_cols=503 Identities=23% Similarity=0.241 Sum_probs=401.9
Q ss_pred CcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Q 004815 174 AFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL 253 (729)
Q Consensus 174 ~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~L 253 (729)
...|...++|+++++ +||++|+++.+. ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 344677788998888 999999998765 99999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC---CcEEEEcCCCCCcccccCCC
Q 004815 254 AIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA---PLAIVIPAKGSSFSMKLRDG 330 (729)
Q Consensus 254 A~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~ 330 (729)
||+++|+++||++|.++.+++.+++++++++++|+++... .......+... ..++++...... ...
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 160 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRESE-----PRL 160 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------C
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEecccccc-----ccc
Confidence 9999999999999999999999999999999999987532 11222222111 222222211100 001
Q ss_pred CcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchH-HHHHHHHHhhCCCCCCCEEEEccCcch
Q 004815 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATP-FKAAADAWCHMDIRKADIVAWPTNLGW 409 (729)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~~ 409 (729)
...++++..... ...+.....++++|||+|||||||.||||+++|+++ .+...+....++++++|++++.+|++|
T Consensus 161 ~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 236 (529)
T 2v7b_A 161 APLFEELIDAAA----PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFF 236 (529)
T ss_dssp CCBHHHHHHTSC----CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTS
T ss_pred ccchhhhhccCC----CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHH
Confidence 224666554221 122233457899999999999999999999999998 566555555678999999999999999
Q ss_pred hhhHH-HHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhH
Q 004815 410 MMGPW-LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDE 488 (729)
Q Consensus 410 ~~~~~-~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~ 488 (729)
++++. .++.+|..|+++++.+...++..+++.|+++++|++.++|+++..+++..........+||.+++|||++++++
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~ 316 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREI 316 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHH
Confidence 99985 56789999999999865678899999999999999999999999998765333321248999999999999999
Q ss_pred HHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCc
Q 004815 489 YLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 489 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~ 568 (729)
.+++.+.+ +++++|.||+||++..++..... ....+++|+|++|++++|+|++|+++|.|+. |||+|++..+..+
T Consensus 317 ~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g- 391 (529)
T 2v7b_A 317 GERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVM- 391 (529)
T ss_dssp HHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCC-
T ss_pred HHHHHHHh-CCceeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCcccc-
Confidence 99998776 48999999999996554443322 2456789999999999999999999999997 9999976555433
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeec
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 648 (729)
|+++++.|+..|.. +||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|++.
T Consensus 392 Y~~~~~~t~~~f~~-------~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~- 462 (529)
T 2v7b_A 392 YWNNREKSRATFLG-------EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLV-QHDAVLEAAVVGV- 462 (529)
T ss_dssp BTTCHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHT-TSTTEEEEEEEEE-
T ss_pred cCCChHHHHHhhhc-------CCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEEe-
Confidence 46788888888852 29999999999999999999999999999999999999999995 9999999999998
Q ss_pred CCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHH
Q 004815 649 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718 (729)
Q Consensus 649 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~ 718 (729)
++..+ +.++|+|++.+ +. ...+.+.+.|+++++++||+||+|..|+++++||+|+|||++|++|++
T Consensus 463 ~~~~~-~~~~a~vv~~~-~~--~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 463 DHGGL-VKTRAFVVLKR-EF--APSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EETTE-EEEEEEEEECT-TC--CCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred cCCCc-eEEEEEEEecC-CC--CcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 55555 78999999876 33 112334556777899999999999999999999999999999999985
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-76 Score=665.41 Aligned_cols=473 Identities=22% Similarity=0.224 Sum_probs=375.4
Q ss_pred hHHhhhhccccCCCCC-CeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLD-DIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAI 255 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~ 255 (729)
....+.|.++++++|+ ++|+++.++ ++||+||+++++++|++|+ .|++|+|+++|++++++++|||
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~ 88 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAA 88 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHH
Confidence 3445667778888887 999999877 9999999999999998875 3889999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCH
Q 004815 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISW 334 (729)
Q Consensus 256 l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 334 (729)
+++|+++||+||.++.+++.+++++++++++|++.... ... .... ..+.+...
T Consensus 89 ~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~------~~~~~~~~~~~~~--------------- 142 (505)
T 3nyq_A 89 LLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LPP------ALGALERVDVDVR--------------- 142 (505)
T ss_dssp HHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CCG------GGTTSEEEECCTT---------------
T ss_pred HHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cch------hhccccccccccc---------------
Confidence 99999999999999999999999999999999987421 000 0001 01111000
Q ss_pred HHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-
Q 004815 335 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP- 413 (729)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~- 413 (729)
.....+.....++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|..+.
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 212 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHT
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHH
Confidence 000112234568899999999999999999999999999999998888999999999999999999887
Q ss_pred HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC---CCCCCCCccEEEeecCCCCHhHHH
Q 004815 414 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI---DGYDWSSIRCFGSTGEASNVDEYL 490 (729)
Q Consensus 414 ~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~---~~~~l~sLr~v~~gGe~l~~~~~~ 490 (729)
+.++.+|..|+++++.+. .++..+++.+ ++++|+++++|+++..|++.... ....++++|.+++||+++++++.+
T Consensus 213 ~~~~~~l~~G~~~~~~~~-~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~ 290 (505)
T 3nyq_A 213 LGILGPLRRGGSVRHLGR-FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHE 290 (505)
T ss_dssp TTTHHHHHHTCEEEECSS-CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHH
T ss_pred HHHHHHHhcCCEEEECCC-CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHH
Confidence 578999999999999754 6778888888 88999999999999999874221 123467899999999999999999
Q ss_pred HHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCC---CCCceeEEEeeccccCCC
Q 004815 491 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQ---NVPGMGELALSPLIFGAS 567 (729)
Q Consensus 491 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~---g~~giGel~v~~~~~~~~ 567 (729)
++...+ +++++|.||+||+++.++... .......++|+|++|++++|+|++|++++. |+. |||+|++..+..+
T Consensus 291 ~~~~~~-~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~G 366 (505)
T 3nyq_A 291 RIAAAT-GRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTE 366 (505)
T ss_dssp HHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCE
T ss_pred HHHHhc-CCeeecccchhhcccccccCC-CCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhh
Confidence 888766 489999999999987654433 334456789999999999999999999886 775 9999976655543
Q ss_pred cccccccccccccccccCCCCceeEEeCceEEEecCceEEEEccc-CCeeecCceeechHHHHHHHhcCCCCeeeeEEEe
Q 004815 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA-DDTMNLGGIKVSSVEIERICNAVDSNVLETAAIG 646 (729)
Q Consensus 568 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~-d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~ 646 (729)
|+++++.|++.|..++ ||+|||+|++++||+++|+||+ |++||++|+||+|.|||++|. +||+|.+|+|++
T Consensus 367 -Y~~~~~~t~~~f~~~g------~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~-~~p~V~~a~Vv~ 438 (505)
T 3nyq_A 367 -YLNRPDATAAAFTEDG------FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTG 438 (505)
T ss_dssp -ETTCHHHHHHTBCTTS------CEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEE
T ss_pred -hCCChhHhhhhhcCCC------CCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHH-HCcCccEEEEEe
Confidence 4678889999997543 9999999999999999999997 699999999999999999995 999999999999
Q ss_pred ecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHH
Q 004815 647 VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718 (729)
Q Consensus 647 ~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~ 718 (729)
.+++..| +.++|||++.+.+. ..+.+++++ +|+++||+||+|+.|+++++||+|+||||||++|++
T Consensus 439 ~~~~~~g-~~l~a~vv~~~~~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 439 EPDPDLG-ERIVAWIVPADPAA-PPALGTLAD----HVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEETTTE-EEEEEEEEESSTTS-CCCHHHHHH----HHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred eECCCCC-cEEEEEEEECCCCC-CCCHHHHHH----HHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 9998887 89999999886222 345555555 678889999999999999999999999999999986
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-75 Score=657.46 Aligned_cols=493 Identities=17% Similarity=0.174 Sum_probs=377.1
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
.++|.++++++||++|+++.++ ++||+||+++++++|++|+++ +||+|+|+++|++++++++|||+++|
T Consensus 4 ~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 4 DFWLYKQAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCHHHHHHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 3567788899999999999877 999999999999999999987 89999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 339 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 339 (729)
++++|++|.++.+++.+++++++++++|++...............+.. ............................
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEF----AGRDITTNGLLDNTMGIQYDTSNETVVP 148 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccccccee----eeeecccccccccccccccccchhhccc
Confidence 999999999999999999999999999999864432211110000000 0000000000000000000000011110
Q ss_pred HhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHH
Q 004815 340 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 419 (729)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~ 419 (729)
.. ...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++..++.+
T Consensus 149 ~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 149 KE---SPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp -C---CHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred cC---CcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence 00 001112234578999999999999999999999999999999988889999999999999999999999889999
Q ss_pred hhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCC
Q 004815 420 LLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 499 (729)
Q Consensus 420 L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~ 499 (729)
++.|+++++.+. .++..+++.|+++++|++.++|++++.|.+...... .+||.+++|||++++++.+++.+. ++
T Consensus 226 l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~ 299 (501)
T 3ipl_A 226 VIEGFTVRIVDK-FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NL 299 (501)
T ss_dssp HHHTCEEEECSS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TC
T ss_pred HHcCceEEeCCC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CC
Confidence 999999999874 688999999999999999999999999988754332 389999999999999999888763 58
Q ss_pred CeeecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccccc
Q 004815 500 PVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 578 (729)
Q Consensus 500 ~l~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~ 578 (729)
+++|.||+||+++.++..... ......++|+|++|++++|+|++ .|.. |||+|.+..+..+ |+++++.++.
T Consensus 300 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~--GEl~v~g~~~~~g-Y~~~~~~t~~ 371 (501)
T 3ipl_A 300 PIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGH--GELMIKGANVMNG-YLYPTDLTGT 371 (501)
T ss_dssp CEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCC--EEEEEESTTSCSC-CSBSTTCCCS
T ss_pred CEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCc--cEEEEeccchhhh-hCcChhhcch
Confidence 999999999998754443332 22355789999999999999986 3444 9999976655443 3567777765
Q ss_pred ccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 579 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
|. .+||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.++
T Consensus 372 -~~-------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~ 441 (501)
T 3ipl_A 372 -FE-------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPK 441 (501)
T ss_dssp -EE-------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred -hc-------CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEE
Confidence 42 239999999999999999999999999999999999999999995 9999999999999998877 8899
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 659 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 659 a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++++... ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++....
T Consensus 442 a~v~~~~----~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 442 LYFVSES----DISKAQLIA----YLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp EEEEESS----CCCHHHHHH----HHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred EEEEeCC----CCCHHHHHH----HHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 9998765 456666666 5778899999999999999999999999999999987654
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-75 Score=666.91 Aligned_cols=503 Identities=16% Similarity=0.185 Sum_probs=309.1
Q ss_pred hhhhccccCCCCCCeEEEEeecC--CCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEG--DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~--~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
.++|+++++++||++|+++.+.. ......+++||+||+++++++|++|++.|+ +||+|+|+++|++++++++|||++
T Consensus 23 ~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~ 101 (562)
T 3ite_A 23 SHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMK 101 (562)
T ss_dssp THHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHH
Confidence 46688899999999999986531 011223589999999999999999999999 799999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
+|+++||++|.++.+++.+++++++++++|+++....... ......++.. ....+.+.
T Consensus 102 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~ 159 (562)
T 3ite_A 102 SGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIEN 159 (562)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHH
T ss_pred hCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhh
Confidence 9999999999999999999999999999999875321110 0011111110 11122222
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh--------CCCCCCCEEEEccCcch
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--------MDIRKADIVAWPTNLGW 409 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--------~~~~~~d~~l~~~~~~~ 409 (729)
..... .........++++|||+|||||||.||||+++|+++.+.+.+.... +.+...+++++.++++|
T Consensus 160 ~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (562)
T 3ite_A 160 LSTQD----TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF 235 (562)
T ss_dssp HHHSC----CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred ccccc----ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence 22211 1122234567889999999999999999999999998877654432 45788999999999999
Q ss_pred hhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHH
Q 004815 410 MMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 489 (729)
Q Consensus 410 ~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~ 489 (729)
+.++..++.++..|+++++.+....+..+.+.|+++++|++.++|++++.+... ..++++||.+++||+++++++.
T Consensus 236 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~ 311 (562)
T 3ite_A 236 DVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQ 311 (562)
T ss_dssp THHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHH
T ss_pred hhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHH
Confidence 999999999999999999876433456788999999999999999999887432 3457899999999999999999
Q ss_pred HHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccccCCCc
Q 004815 490 LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 490 ~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~~~ 568 (729)
+++.+.+ +++++|.||+||+++.++...........++|+|+++++++|+|+ .++++|.|++ |||+|.+..+..+
T Consensus 312 ~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G- 387 (562)
T 3ite_A 312 QIWSSSD-RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANG- 387 (562)
T ss_dssp HHHTTCS-SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCE-
T ss_pred HHHhhCC-CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchh-
Confidence 9887654 589999999999987665544444455678999999999999996 5788999997 9999976655443
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCC-CCeeeeEEEee
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD-SNVLETAAIGV 647 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~-p~V~~a~Vv~~ 647 (729)
|+++++.++..|. +|.+||+|||+|++|+||+++|+||+|||||++|+||+|.|||++|. +| |.|.+++|++.
T Consensus 388 Y~~~p~~t~~~~~-----~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~ 461 (562)
T 3ite_A 388 YLNRPDAKGFCDI-----NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLL 461 (562)
T ss_dssp ESSCTTCCSEEEE-----TTEEEEEEEEEEEECTTSCEEEEEEC------------------------------------
T ss_pred hCCCccccccccC-----CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEe
Confidence 4567777664433 36789999999999999999999999999999999999999999996 65 88999999998
Q ss_pred cCCCCCceeEEEEEEecCCCCCC-------CChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCC-CCChhhHHHHHHH
Q 004815 648 PPPDGGPEQLTIVVVFKDSNYTP-------PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRT-ATNKVMRRVLRKQ 719 (729)
Q Consensus 648 ~~~~~g~~~l~a~vv~~~~~~~~-------~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t-~~GKidR~~L~~~ 719 (729)
+++..++..++++++... .... .....+.+.|+++|+++||.||+|+.|+++++||+| ++||+||++|+++
T Consensus 462 ~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~ 540 (562)
T 3ite_A 462 NHPGTSKQFLVSFVASSG-AAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHM 540 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcceEEEEEEeccc-ccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHH
Confidence 888777334444444332 1100 011223456777889999999999999999999998 9999999999999
Q ss_pred HHhhh
Q 004815 720 LAQLD 724 (729)
Q Consensus 720 ~~~~~ 724 (729)
+.++.
T Consensus 541 ~~~~~ 545 (562)
T 3ite_A 541 FHTLS 545 (562)
T ss_dssp -----
T ss_pred HhccC
Confidence 98754
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-74 Score=660.14 Aligned_cols=505 Identities=15% Similarity=0.117 Sum_probs=401.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 13 l~~~l~~~a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 13 LVDVVRLRALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 45678888999999999998652 12249999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCC---HHHHHHHHHhcCceEEEEecceecCCccccchhhHH-hhcC--CcEEEEcCCCCCcccccCCCCc
Q 004815 259 GYIVVSIADSFA---SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVI-DAQA--PLAIVIPAKGSSFSMKLRDGDI 332 (729)
Q Consensus 259 Ga~~vpldp~~~---~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~i~~~~~~~~~~~~~~~~ 332 (729)
|+++||++|.++ .+++.++++++++++++++...... ..... ...+ .....+.
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~~~--------------- 147 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKK------FTADELNTNPKFLKIPAIA--------------- 147 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHH------HCC-----CCEETTEEEEE---------------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHH------HHHhhhhhcccccccceee---------------
Confidence 999999999884 5789999999999999998753210 00000 0000 0001110
Q ss_pred CHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhh
Q 004815 333 SWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMG 412 (729)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 412 (729)
.+++... ...........++++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|+++
T Consensus 148 -~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g 222 (590)
T 3kxw_A 148 -LESIELN----RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMG 222 (590)
T ss_dssp -GGGCCGG----GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -chhcccc----ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchh
Confidence 0000000 11122334567899999999999999999999999999999999989999999999999999999999
Q ss_pred HHH-HHHHhhcCceEEEeCCCC---ChhhHHHHHHHcCCcEEEecHHHHHHHHhcC---CCCCCCCCCccEEEeecCCCC
Q 004815 413 PWL-VYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN---CIDGYDWSSIRCFGSTGEASN 485 (729)
Q Consensus 413 ~~~-i~~~L~~G~~lvl~~~~~---~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~---~~~~~~l~sLr~v~~gGe~l~ 485 (729)
+.. ++.+|+.|+++++.+... ++..+++.|+++++|++.++|+++..+.+.. .....++++||.+++||++++
T Consensus 223 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~ 302 (590)
T 3kxw_A 223 LIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVR 302 (590)
T ss_dssp HHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCC
T ss_pred hHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCC
Confidence 875 889999999999976432 6788999999999999999999999987752 234567899999999999999
Q ss_pred HhHHHHHHhccC-----CCCeeecccccccccccccCCcc--------------------------cccccccccCCCCC
Q 004815 486 VDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLL--------------------------QAQSLAAFSTPAMG 534 (729)
Q Consensus 486 ~~~~~~~~~~~~-----~~~l~~~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~ 534 (729)
+++.+++.+.++ +.+++|.||+||+++.++..... ......++|+|+++
T Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 382 (590)
T 3kxw_A 303 EETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE 382 (590)
T ss_dssp HHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE
T ss_pred HHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC
Confidence 999999887763 35799999999999865543211 11234689999998
Q ss_pred cEEEEEcCC-CCccCCCCCceeEEEeeccccCCCcccccccccccccccccCC--CCceeEEeCceEEEecCceEEEEcc
Q 004815 535 CKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSR--NGQILRRHGDVFERTSGGYYRAHGR 611 (729)
Q Consensus 535 ~~~~v~d~~-g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~--~g~~~y~TGDl~~~~~dG~l~~~GR 611 (729)
++|+|++ ++++|.|++ |||+|++..+..+ |+++++.|++.|..++.. .|.+||+|||+|+++ ||+|+|+||
T Consensus 383 --v~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR 456 (590)
T 3kxw_A 383 --VKIIDPDTLIPCDFDQV--GEIWVQSNSVAKG-YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGR 456 (590)
T ss_dssp --EEEECTTTCCBCCTTBC--EEEEEESTTSCCC-BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEE
T ss_pred --eEEEcCCCCcCCCCCCE--EEEEEeCCccccc-ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcC
Confidence 8899987 899999997 9999976655543 467889999999876543 255699999999999 999999999
Q ss_pred cCCeeecCceeechHHHHHHHhcCCCCee--eeEEEeecCCCCCceeEEEEEEecCCCC-CCCChHHHHHHHHHHHHhhC
Q 004815 612 ADDTMNLGGIKVSSVEIERICNAVDSNVL--ETAAIGVPPPDGGPEQLTIVVVFKDSNY-TPPDLNQLRMSFNSAVQKKL 688 (729)
Q Consensus 612 ~d~~iki~G~ri~~~eIE~~L~~~~p~V~--~a~Vv~~~~~~~g~~~l~a~vv~~~~~~-~~~~~~~l~~~l~~~l~~~L 688 (729)
+|||||++|+||+|.|||++|+..||+|. +|+|++++++. + +.++++++..+ +. ...+.+++++++++.|...+
T Consensus 457 ~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~-~~~~~~v~~~~-~~~~~~~~~~l~~~l~~~l~~~~ 533 (590)
T 3kxw_A 457 IKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-E-YKLTVMCEVKN-RFMDDVAQDNLFNEIFELVYENH 533 (590)
T ss_dssp SSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-E-EEEEEEEEESC-TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-C-ceEEEEEEecc-ccccchhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999944899998 89999988765 4 78999998876 32 12345667777666665543
Q ss_pred CCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 689 NPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 689 ~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
...+.+..++.+++||+|+||||+|++|++++.+
T Consensus 534 ~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 534 QLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp SCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHH
T ss_pred CCceeEEEEECCCccCcCCCcHHHHHHHHHHHHc
Confidence 2223334556668999999999999999999876
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=517.79 Aligned_cols=396 Identities=17% Similarity=0.120 Sum_probs=310.5
Q ss_pred HHhhhhccccCCCCCCeEEEEeecC-CCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEG-DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
...++|.++++++||++|+++.+.. +.++..+++||+||+++++++|++|+++|+ +||+|+|+++|++++++++|||+
T Consensus 25 tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~ 103 (480)
T 3t5a_A 25 SLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGAL 103 (480)
T ss_dssp CHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHH
Confidence 3457788889999999999998721 112334599999999999999999999996 99999999999999999999999
Q ss_pred HcCCEEEecCC---CCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-------cEEEEcCCCCCcccc
Q 004815 257 LAGYIVVSIAD---SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-------LAIVIPAKGSSFSMK 326 (729)
Q Consensus 257 ~aGa~~vpldp---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~ 326 (729)
++|+++|||++ .++.+++.+++++++++++|+++... ..+.+.... ..+.+....
T Consensus 104 ~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~------ 168 (480)
T 3t5a_A 104 QAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRPGESPPSIIEVDLLD------ 168 (480)
T ss_dssp HTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC------CCEEEEGGGSC------
T ss_pred HhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccccccccceeEecccc------
Confidence 99999999999 88899999999999999999987532 112111110 111110000
Q ss_pred cCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCC------CCE
Q 004815 327 LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRK------ADI 400 (729)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~d~ 400 (729)
.............++++|||+|||||||.||||+++|+++++.+.+....+++.+ +|+
T Consensus 169 ----------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~ 232 (480)
T 3t5a_A 169 ----------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSA 232 (480)
T ss_dssp ----------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEE
T ss_pred ----------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCe
Confidence 0011112334457889999999999999999999999999999888888888877 999
Q ss_pred EEEccCcchhhhH-HHHHHHhhcCceEEEeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhc----CCCCCCCCC
Q 004815 401 VAWPTNLGWMMGP-WLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKST----NCIDGYDWS 472 (729)
Q Consensus 401 ~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~----~~~~~~~l~ 472 (729)
+++.+|++|++++ +.++.+|+.|+++++.+.. .++..+++.|+++++| +..+|+++..++.. ......+++
T Consensus 233 ~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~ 311 (480)
T 3t5a_A 233 LVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLG 311 (480)
T ss_dssp EEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCT
T ss_pred EEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchh
Confidence 9999999999996 5789999999999998643 3778899999999999 78889888877653 223456789
Q ss_pred CccEEEeecCCCCHhHHHHHHhccC-----CCCeeecccccccccccccCCccc------------------------cc
Q 004815 473 SIRCFGSTGEASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQ------------------------AQ 523 (729)
Q Consensus 473 sLr~v~~gGe~l~~~~~~~~~~~~~-----~~~l~~~YG~TE~~~~~~~~~~~~------------------------~~ 523 (729)
+||.+++|||++++++.+++.+.++ +++++|.||+||+++.++...... ..
T Consensus 312 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 391 (480)
T 3t5a_A 312 NILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGAT 391 (480)
T ss_dssp TCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCE
T ss_pred hhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcc
Confidence 9999999999999999999988763 457999999999998665544321 12
Q ss_pred ccccccCCCCCcEEEEEcCC-CCccCCCCCceeEEEeeccccCCCcccccccccccccccccC-----CCCceeEEeCce
Q 004815 524 SLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPS-----RNGQILRRHGDV 597 (729)
Q Consensus 524 ~~~~iG~p~~~~~~~v~d~~-g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~-----~~g~~~y~TGDl 597 (729)
...++|+|++ ++++|+|++ |+++|.|++ |||+|++..+..+ |+++++.|++.|..++. .++++||+|||+
T Consensus 392 ~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDl 467 (480)
T 3t5a_A 392 SLISYMLPRS-PIVRIVDSDTCIECPDGTV--GEIWVHGDNVANG-YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDS 467 (480)
T ss_dssp EEECEECCSS-SEEEEEETTTTEECCTTBC--EEEEEESTTSCCC-BTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEE
T ss_pred eeeecCcccC-CEEEEEcCCCCcCCCCCCE--EEEEEeCCccccc-cccCcchhHHHHhhhhccccCCCCCCCeeeccce
Confidence 3468999999 999999977 799999997 9999976655443 46788999998864332 235679999999
Q ss_pred EEEecCceEEEEcc
Q 004815 598 FERTSGGYYRAHGR 611 (729)
Q Consensus 598 ~~~~~dG~l~~~GR 611 (729)
|+++ ||+|+|+||
T Consensus 468 g~~d-dG~l~~~GR 480 (480)
T 3t5a_A 468 GFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEE-TTEEEECC-
T ss_pred eeEE-CCEEEEeCC
Confidence 9997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-56 Score=476.32 Aligned_cols=317 Identities=17% Similarity=0.162 Sum_probs=267.5
Q ss_pred CCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCCh
Q 004815 356 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLG 435 (729)
Q Consensus 356 ~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~ 435 (729)
.+++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 4789999999999999999999999999999999899999999999999999999999999999999999999875443
Q ss_pred hhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccc
Q 004815 436 SGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFI 515 (729)
Q Consensus 436 ~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 515 (729)
+++.|+++++|++.++|++++.|++... ...++++||.+++||+++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567899999999999999999988753 34568999999999999999999988753 589999999999987655
Q ss_pred cCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeC
Q 004815 516 TGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG 595 (729)
Q Consensus 516 ~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TG 595 (729)
.... .....+++|.|.||+++.+.+ . |||++.+.... .+||+||
T Consensus 190 ~~~~-~~~~~g~~~~~~pgv~~~~~~----------~--Gel~~~g~~~~-----------------------~g~~~TG 233 (358)
T 4gs5_A 190 LKAL-NGPEASELYVFLPGIQYGVDE----------R--GCLHISGAVTN-----------------------GQTVQTN 233 (358)
T ss_dssp EEEC-SSTTCCSCEEECTTCEEEECT----------T--SEEEEESGGGT-----------------------TCCEEEE
T ss_pred cccc-cccccceeeccCCCeEEEecC----------c--CceEEeccccc-----------------------CcceecC
Confidence 4333 334457889999999887643 2 89998643221 2399999
Q ss_pred ceEEEecCceEEEEcccCCeeecCceeechHHHHHHHh--cCCCCeeeeEEE-eecCCCCCceeEEEEEEecCCCCCCCC
Q 004815 596 DVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN--AVDSNVLETAAI-GVPPPDGGPEQLTIVVVFKDSNYTPPD 672 (729)
Q Consensus 596 Dl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~--~~~p~V~~a~Vv-~~~~~~~g~~~l~a~vv~~~~~~~~~~ 672 (729)
|+|++|+|| ++|+||+||+||++|+||+|.|||++|. ..||+|.+|+|+ +.+|+..| +.++|+|+... +
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~-~----- 305 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAM-P----- 305 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCC-C-----
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCC-C-----
Confidence 999999999 6778999999999999999999998773 158999999887 56677777 78888887554 1
Q ss_pred hHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 673 LNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 673 ~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
+...+.|+++|+++||.||+|+.|+++++||+|+||||||++|++++++.
T Consensus 306 -~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 306 -EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp -HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred -CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 33445566678899999999999999999999999999999999988764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=437.18 Aligned_cols=325 Identities=20% Similarity=0.210 Sum_probs=257.7
Q ss_pred cCCC-CCeeEEEeccCCCCCCceEEeCCchHHHHHHHH---HhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEE
Q 004815 353 EQPV-EAFTNILFSSGTTGEPKAIPWTNATPFKAAADA---WCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIA 427 (729)
Q Consensus 353 ~~~~-~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lv 427 (729)
..++ ++++||+|||||||.||||+++|+++.+...+. ...++++++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3456 899999999999999999999999997766554 345689999999999998765554 56788999999999
Q ss_pred EeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCC--CCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecc
Q 004815 428 LYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYC 505 (729)
Q Consensus 428 l~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 505 (729)
+.+. .++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAAA-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCCS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCCC-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 8764 4788999999999999999999999999876432222 378999999999999999999998877 58999999
Q ss_pred cccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCccccccccccccccccc
Q 004815 506 GGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584 (729)
Q Consensus 506 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p 584 (729)
|+||+++.++..... ....+|.|.+++.++|+| ++|+++|.|+. |||+|++.. +..| |
T Consensus 239 G~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~~-------------~~~~---~ 297 (436)
T 3qov_A 239 GMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTLD-------------REMM---P 297 (436)
T ss_dssp EEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEESS-------------CCSS---C
T ss_pred cchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEeccC-------------cCCc---e
Confidence 999995432222211 122367788899999999 78999999997 999996421 1122 1
Q ss_pred CCCCceeEEeCceEEEecCc------e---EEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004815 585 SRNGQILRRHGDVFERTSGG------Y---YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 655 (729)
Q Consensus 585 ~~~g~~~y~TGDl~~~~~dG------~---l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 655 (729)
..||+|||+|++++|| + ++|+||.||+||++|++|+|.|||++|. +||+|.+++|++.+++..+ +
T Consensus 298 ----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-~ 371 (436)
T 3qov_A 298 ----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-D 371 (436)
T ss_dssp ----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-E
T ss_pred ----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-c
Confidence 1299999999999998 5 6999999999999999999999999995 9999999999999887666 8
Q ss_pred eEEEEEEecCCCCCCCC----hHHHHHHHHHHHHhhCCCC-CccceEEeCC--CCCCCCCChhhHH
Q 004815 656 QLTIVVVFKDSNYTPPD----LNQLRMSFNSAVQKKLNPL-FKVSHVVPLP--SLPRTATNKVMRR 714 (729)
Q Consensus 656 ~l~a~vv~~~~~~~~~~----~~~l~~~l~~~l~~~L~~~-~~P~~i~~v~--~lP~t~~GKidR~ 714 (729)
.++|+|++++ .. .+ .++++++|++.| +.+ ++|..+++++ +||+|+ ||++|.
T Consensus 372 ~l~a~v~~~~-~~--~~~~~~~~~l~~~l~~~l----~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 372 EMIVEVELSD-LS--TDNYIELEKIRRDIIRQL----KDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEECT-TC--CCCHHHHHHHHHHHHHHH----HHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEEEEcC-cc--ccchhhHHHHHHHHHHHH----HHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 8999999873 32 33 455666555444 455 7888899988 999999 999985
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=429.78 Aligned_cols=330 Identities=20% Similarity=0.171 Sum_probs=261.0
Q ss_pred cCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHH---hhCCCCCCCEEEEccCcc-hhhhHHHHHHHhhcCceEEE
Q 004815 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLG-WMMGPWLVYASLLNGASIAL 428 (729)
Q Consensus 353 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~i~~~L~~G~~lvl 428 (729)
...++++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..+++ |..+...++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 45678999999999999999999999999877654433 368899999999999985 56666778899999999988
Q ss_pred eCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCC--CCCCccEEEeecCCCCHhHHHHHHhccCCCCeeeccc
Q 004815 429 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 506 (729)
Q Consensus 429 ~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 506 (729)
.+. .++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 765 4788999999999999999999999999875322222 257999999999999999999998777 588999999
Q ss_pred ccccccc-cccCCcccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccccCCCccccccccccccccccc
Q 004815 507 GTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584 (729)
Q Consensus 507 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p 584 (729)
+||+++. +...... .....+.|.+++.++|+|+ +|+++|.|+. |||+|++. ++..| |
T Consensus 246 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~~-------------t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTSL-------------TKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeCC-------------CcccC---h
Confidence 9997432 2221111 1112455778999999995 6999999997 99999642 11223 2
Q ss_pred CCCCceeEEeCceEEEecC-ceE-----EEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 585 SRNGQILRRHGDVFERTSG-GYY-----RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 585 ~~~g~~~y~TGDl~~~~~d-G~l-----~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
..||+|||+|++++| |++ +++||.||+||++|++|+|.|||++|. .||+|.+++|++++++..+ +.++
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 129999999999999 997 899999999999999999999999995 9999999999998876665 7899
Q ss_pred EEEEecC--CCC-CCCChHHHHHHHHHHHHhhCCCCC-ccceEEeC--CCCCCCCCChhhHHH
Q 004815 659 IVVVFKD--SNY-TPPDLNQLRMSFNSAVQKKLNPLF-KVSHVVPL--PSLPRTATNKVMRRV 715 (729)
Q Consensus 659 a~vv~~~--~~~-~~~~~~~l~~~l~~~l~~~L~~~~-~P~~i~~v--~~lP~t~~GKidR~~ 715 (729)
++|++++ ... ...+.+++++ .|+++|+.|+ +|..|.++ ++||+|++||++|+.
T Consensus 379 a~v~~~~~~~~~~~~~~~~~l~~----~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAALAR----ELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHHHHH----HHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred EEEEECCcccccchhhHHHHHHH----HHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 9998763 100 0122344555 4555666654 77777766 699999999999975
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-48 Score=426.99 Aligned_cols=328 Identities=20% Similarity=0.163 Sum_probs=261.8
Q ss_pred cCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHH---hhCCCCCCCEEEEccCc-chhhhHHHHHHHhhcCceEEE
Q 004815 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNL-GWMMGPWLVYASLLNGASIAL 428 (729)
Q Consensus 353 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~i~~~L~~G~~lvl 428 (729)
...++++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..|+ .|..+...++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 45678999999999999999999999999877654432 36889999999999998 566666778899999999987
Q ss_pred eCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCC--CCCCccEEEeecCCCCHhHHHHHHhccCCCCeeeccc
Q 004815 429 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 506 (729)
Q Consensus 429 ~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 506 (729)
.+. .++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 664 4788999999999999999999999999875322222 247899999999999999999988777 488999999
Q ss_pred ccccccc-cccCCcccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccccCCCccccccccccccccccc
Q 004815 507 GTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584 (729)
Q Consensus 507 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p 584 (729)
+||+++. +....... ...++.|.+++.++|+|+ +|+++|.|+. |||+|++. +++.| |
T Consensus 244 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~~-------------t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVET---KDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTSL-------------TKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTTT---CSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeeEEecCCC---CCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEecC-------------CcCCc---h
Confidence 9998432 22222111 112566778999999995 5999999997 99999641 12223 2
Q ss_pred CCCCceeEEeCceEEEec-CceE-----EEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 585 SRNGQILRRHGDVFERTS-GGYY-----RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 585 ~~~g~~~y~TGDl~~~~~-dG~l-----~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
..||+|||+|++++ ||++ +++||.||+||++|++|+|.|||++|. .||+|.+++|++++++..+ +.++
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~ 376 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT 376 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence 12999999999999 6996 899999999999999999999999995 9999999999998876666 7899
Q ss_pred EEEEecCCCCCC--CChHHHHHHHHHHHHhhCCCC-CccceEEeC--CCCCCCCCChhhHHH
Q 004815 659 IVVVFKDSNYTP--PDLNQLRMSFNSAVQKKLNPL-FKVSHVVPL--PSLPRTATNKVMRRV 715 (729)
Q Consensus 659 a~vv~~~~~~~~--~~~~~l~~~l~~~l~~~L~~~-~~P~~i~~v--~~lP~t~~GKidR~~ 715 (729)
|+|++++ +... .+.+++++ .|+++|+.| .+|..|.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~-~~~~~~~~~~~l~~----~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCP-ETAPDTAAIQVAKQ----ALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCT-TTTTCHHHHHHHHH----HHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECC-CccchhhhHHHHHH----HHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9999876 4300 12244444 566666666 488888888 5999999 9999864
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-32 Score=290.35 Aligned_cols=238 Identities=14% Similarity=0.039 Sum_probs=180.6
Q ss_pred cCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHH---hhCCCCCCCEEEEccCc-chhhhHHHHHHHhhcCceEEE
Q 004815 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNL-GWMMGPWLVYASLLNGASIAL 428 (729)
Q Consensus 353 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~i~~~L~~G~~lvl 428 (729)
..+++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++.+|+ .|+.+....+.++..|+ +++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF 165 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence 34788999999999999999999999999998887543 55688999999999999 88888887778899999 444
Q ss_pred eCCCCChh-----------------------hHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCC
Q 004815 429 YNGSPLGS-----------------------GFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 485 (729)
Q Consensus 429 ~~~~~~~~-----------------------~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~ 485 (729)
.. ..++. .++++|+++++|++.++|+++..|++.......++++||.+++|||+++
T Consensus 166 ~~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 166 SI-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN 244 (369)
T ss_dssp CC-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred Cc-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence 43 24555 6777999999999999999999998763322345688999999999999
Q ss_pred HhHHHHHH-hccCCCCeeecccccccccccccCCcccccccccccCC------CCCcEEEEEcC-CCCccCCCCCceeEE
Q 004815 486 VDEYLWLM-GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP------AMGCKLFILGN-DGCPIPQNVPGMGEL 557 (729)
Q Consensus 486 ~~~~~~~~-~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~v~d~-~g~~~p~g~~giGel 557 (729)
+++.+++. +.+++++++|.||+||+++++.... ..++|+| +++++++|+|+ +|+++|.|++ |||
T Consensus 245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GEl 316 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSLL------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNV 316 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EEE
T ss_pred HHHHHHHHHHhCCCcEEEcccCchhhhcceeccc------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eEE
Confidence 99999999 8887899999999999886542211 1158999 99999999998 8999999997 999
Q ss_pred EeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecC---------ceEEEEcccCCeeecCce
Q 004815 558 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG---------GYYRAHGRADDTMNLGGI 621 (729)
Q Consensus 558 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~d---------G~l~~~GR~d~~iki~G~ 621 (729)
+|++.. +..|.. .|+|||++++.+. ..+..++|.|+++||+|.
T Consensus 317 ~vt~l~-------------~~~~l~--------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 317 IVTHLS-------------PWAFYP--------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEE-------------TTEEEE--------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEcC-------------cccccc--------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 996421 112211 5999999988542 346778999999999885
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-15 Score=131.65 Aligned_cols=96 Identities=19% Similarity=0.316 Sum_probs=73.5
Q ss_pred cccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCCh---HHHHHHHHHHHHh
Q 004815 610 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL---NQLRMSFNSAVQK 686 (729)
Q Consensus 610 GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~---~~l~~~l~~~l~~ 686 (729)
.|.|||||++|+||+|.|||++|. +||+|.+++|++++++.++ +.++++|+..+ +. ..+. +++.+.++++++.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~-~~-~~~~~~~~~l~~~i~~~l~~ 76 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQ-LF-TDDYGRLQALTREITRQLKD 76 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECT-TC-CCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEee-cc-ccccchhhhhHHHHHHHHHH
Confidence 499999999999999999999995 9999999999999988777 88999998887 44 2332 4566677777766
Q ss_pred hCCCCCccceEEeC--CCCCCCCCChhhH
Q 004815 687 KLNPLFKVSHVVPL--PSLPRTATNKVMR 713 (729)
Q Consensus 687 ~L~~~~~P~~i~~v--~~lP~t~~GKidR 713 (729)
.+. +|..+.++ ++||+| +||++|
T Consensus 77 ~~g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 77 EIL---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHS---SCCEEEEECTTCSCCC----CCC
T ss_pred HhC---CccceEEEcCCeecCC-CCCcch
Confidence 652 33344444 589999 799987
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-07 Score=101.48 Aligned_cols=162 Identities=12% Similarity=0.011 Sum_probs=91.6
Q ss_pred CCCccE--EEeecCCCCHhHHHHHHhccCCCCee-ecccccccccccccCCccccccccccc-CCCCCc-EEEEE--cCC
Q 004815 471 WSSIRC--FGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFS-TPAMGC-KLFIL--GND 543 (729)
Q Consensus 471 l~sLr~--v~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~iG-~p~~~~-~~~v~--d~~ 543 (729)
+++|+. ++++|. + ..-..+++..+++.+++ ..|+.||+-+.+-.. +..+ ....+ ..+|+. -...+ |+.
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~-p~~~--~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVT-PRLS--PEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEEEECCC-TTSC--TTTCCEEECTTSCEEEEEEC---
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceeeeeecC-CCCC--ccccceeecCCcEEEEEEecccc
Confidence 577753 344552 2 22224444445667877 999999964432111 1111 11111 122332 12233 322
Q ss_pred C---------CccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEec----CceEEEEc
Q 004815 544 G---------CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTS----GGYYRAHG 610 (729)
Q Consensus 544 g---------~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~----dG~l~~~G 610 (729)
+ ..|..|+. +||+|+... | +. -|++||++++.. ...+.|+|
T Consensus 376 ~~~~~~~v~l~eve~G~~--YelviTt~~-G--------------L~---------RYr~GD~v~v~g~~~~~p~~~~~g 429 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGEE--YEVVITNYA-G--------------LY---------RYRLGDVVKVIGFYNNTPQLKFIC 429 (581)
T ss_dssp ----CCCEEGGGCCTTCE--EEEEEESTT-S--------------CS---------SEEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCceeeHHHcCCCCe--EEEEEeecc-c--------------ee---------eEEcCCEEEEecccCCCcEEEEEe
Confidence 1 24567775 899985331 1 00 399999999864 26799999
Q ss_pred ccCCeeecCceeechHHHHHHHhcC-----CC--CeeeeEEEeecCCCCCceeEEEEEEecC
Q 004815 611 RADDTMNLGGIKVSSVEIERICNAV-----DS--NVLETAAIGVPPPDGGPEQLTIVVVFKD 665 (729)
Q Consensus 611 R~d~~iki~G~ri~~~eIE~~L~~~-----~p--~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 665 (729)
|.|+++++.|.++...+||++|... .. .|.|-.+..- ..... ..-+.|+..+.
T Consensus 430 R~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d-~~~~p-~hyv~~wE~~~ 489 (581)
T 4epl_A 430 RRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYID-VSTDP-GHYAIFWEISG 489 (581)
T ss_dssp ETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEE-CSSSS-CEEEEEEEESS
T ss_pred ecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecC-CCCCC-CcEEEEEeecC
Confidence 9999999999999999999998632 22 3666655542 22211 23444456654
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-07 Score=101.10 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=39.3
Q ss_pred EEeCceEEEec----CceEEEEcccCCeeecCceeechHHHHHHHh
Q 004815 592 RRHGDVFERTS----GGYYRAHGRADDTMNLGGIKVSSVEIERICN 633 (729)
Q Consensus 592 y~TGDl~~~~~----dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~ 633 (729)
|++||++++.. ...+.|+||.+++++++|.+|.+.+||++|.
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVD 457 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHH
Confidence 99999999973 5889999999999999999999999999996
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=104.56 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=81.5
Q ss_pred CCC---ccEEEeecCCCCHhHHHHHHhccCCCCee-ecccccccccccccCCcccccccccccC-CCCCc-EEEEEcCC-
Q 004815 471 WSS---IRCFGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFST-PAMGC-KLFILGND- 543 (729)
Q Consensus 471 l~s---Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~iG~-p~~~~-~~~v~d~~- 543 (729)
+++ +.+++.||- ..-..+++..+++.+++ ..|+.||+-+.+-. .+..+ ....|. .+++. -...++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~-~p~~~--~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGINL-DPLCK--PEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEECS-CTTSC--GGGCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeeecc-CCCCC--cccCceeecCCcEEEEEEeccc
Confidence 566 555566663 22234444445667887 89999996433211 11111 011121 12332 23344321
Q ss_pred ---C-----CccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEec----CceEEEEcc
Q 004815 544 ---G-----CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTS----GGYYRAHGR 611 (729)
Q Consensus 544 ---g-----~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~----dG~l~~~GR 611 (729)
. ..|..|+. +||+|+... | + --|++||++++.. ...+.|+||
T Consensus 370 ~~~~~~v~l~eVe~G~~--YelViTt~~-G--------------L---------~RYr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCT--YEPVVTNFA-G--------------L---------YRMRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTCE--EEEEEECSS-S--------------C---------CSEECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCce--EEEEEeecc-c--------------e---------eeEEcCCEEEEcccCCCCcEEEEEEe
Confidence 1 23446665 899885321 1 0 0399999999975 478999999
Q ss_pred cCCeeecCceeechHHHHHHHhcC
Q 004815 612 ADDTMNLGGIKVSSVEIERICNAV 635 (729)
Q Consensus 612 ~d~~iki~G~ri~~~eIE~~L~~~ 635 (729)
.+++++++|.+|...+||++|...
T Consensus 424 ~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 424 ENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp TTEEECSSSCCEEHHHHHHHHHHC
T ss_pred cCCEEEeeeeECCHHHHHHHHHHH
Confidence 999999999999999999999643
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.6e-08 Score=109.43 Aligned_cols=129 Identities=12% Similarity=-0.018 Sum_probs=98.8
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCC---CCchhheeeeeecCCCCC----C-CCCccCC
Q 004815 18 EALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDL---PFSFHQLLYYGCYKDFGP----D-PPAWIPD 87 (729)
Q Consensus 18 ~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r---~~~~~~~~f~~~~~~~~~----~-~~~~~~~ 87 (729)
.++++..+...+|.++|+++++...+ +||+|||+++++.+++.| ++|+|++||..++..... + .....+.
T Consensus 375 lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~i~~~l~~~r~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (520)
T 2jgp_A 375 LAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEELVEKLAIARDLSRNPLFDTVFTFQNSTEEVMTLPECTLAPFMT 454 (520)
T ss_dssp EEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHHHHHHTCCCCCTTSCSSCSEEEEEECCCCSCCCCSSEEEEECSS
T ss_pred eeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhcCCCCCCCCCcEEEEEEEecCCCccccCCCceeEEeec
Confidence 46677777888999999999998877 999999999999999876 478999999998765310 0 0001111
Q ss_pred hhh--hhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecC
Q 004815 88 PEA--AKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRE 155 (729)
Q Consensus 88 ~~~--~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (729)
... ..++||.+.+...++++...+ |+. ++|++.+++++.++|.++|+.+ .+.|+..+..
T Consensus 455 ~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l----~~~p~~~l~~ 516 (520)
T 2jgp_A 455 DETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASI----VQNPHIRLGE 516 (520)
T ss_dssp CSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHH----HHCTTCBGGG
T ss_pred CCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHH----HhCccCchhh
Confidence 112 578898888777778888888 988 9999999999999999999986 3444444443
|
| >4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} | Back alignment and structure |
|---|
Probab=97.54 E-value=2e-06 Score=95.41 Aligned_cols=131 Identities=6% Similarity=-0.095 Sum_probs=84.1
Q ss_pred HHcCCChHH--HHHHHHHHHHHHHhcCC--CCccchHHHHHh---hcCCCC---CCchhheeeeeecCCCCCC-----CC
Q 004815 18 EALGIPSKL--AEQLHEKLAEIVNTHGA--ATPATWQNITTH---ILSPDL---PFSFHQLLYYGCYKDFGPD-----PP 82 (729)
Q Consensus 18 ~~~~~~~~~--~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~---~l~~~r---~~~~~~~~f~~~~~~~~~~-----~~ 82 (729)
.++++..++ ..+|.++|+++++...+ +| ++||+++++ +|++.| ..|+|++||++++....+. ..
T Consensus 300 lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~i~~~~~~l~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 378 (493)
T 4hvm_A 300 VVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHDVVDLAVDLGVVTPPRVAARWDVAVHLCRNAPSSSLTRGERT 378 (493)
T ss_dssp EEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHTTSCBTTBTTGGGCEEECC---------------
T ss_pred eEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHhhhCcccCCCCCcceeEEEEEEecCCcccccccccc
Confidence 455666667 78999999999998877 99 999999999 888765 5789999998886553100 00
Q ss_pred CccCCh----------------------hhhhhCc---HHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHH
Q 004815 83 AWIPDP----------------------EAAKVTN---VGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKT 136 (729)
Q Consensus 83 ~~~~~~----------------------~~~~~~~---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~ 136 (729)
+..++. ...++|| +.+.+...++++...+ |+. ++| +.+++++.++|.+
T Consensus 379 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~~~~~ 452 (493)
T 4hvm_A 379 LAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLDGLDA 452 (493)
T ss_dssp -----CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHHHHHH
T ss_pred ccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHHHHHH
Confidence 000000 0114577 7777777788888888 988 899 9999999999999
Q ss_pred HHhhcccceecCCceeecCCCCC
Q 004815 137 VLNEMSTSFSVPPQCILRENPNG 159 (729)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~ 159 (729)
+|+++ .+.|+..+...++.
T Consensus 453 ~L~~~----~~~p~~~l~~l~ll 471 (493)
T 4hvm_A 453 AMAQA----VADPSAPLPHSTVD 471 (493)
T ss_dssp HHHHH----HHCTTSBCCC----
T ss_pred HHHHH----HhCCCCccccCCCC
Confidence 99997 35556666555543
|
| >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=97.54 E-value=1.2e-06 Score=95.32 Aligned_cols=119 Identities=6% Similarity=-0.130 Sum_probs=90.0
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCC-CCchhheeeeeecCCCC--CCCCC-ccCChhhh
Q 004815 18 EALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDL-PFSFHQLLYYGCYKDFG--PDPPA-WIPDPEAA 91 (729)
Q Consensus 18 ~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r-~~~~~~~~f~~~~~~~~--~~~~~-~~~~~~~~ 91 (729)
.++++..++..+|.++|+++++...+ +||++||+++++.++..+ .+|+|++||+.+++... ++... ........
T Consensus 279 lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~i~~~l~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (436)
T 1l5a_A 279 LPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGS 358 (436)
T ss_dssp EEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCTTCCBCCCSEEEEECCCCCCCTTCEEEEEEEEECC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHHhcccccCCCccceEEEeeccCccccCCCeeEEEecCCCC
Confidence 46777778888999999999998877 999999999999998876 57999999999876531 00000 00000111
Q ss_pred hhCcHHHHHH-HhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcc
Q 004815 92 KVTNVGKLLQ-TRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMS 142 (729)
Q Consensus 92 ~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 142 (729)
.. ||.+.+. ..++++...+ |+. ++|.+.+++++.++|..+|+++.
T Consensus 359 ~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~ 405 (436)
T 1l5a_A 359 AE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLL 405 (436)
T ss_dssp CC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHH
Confidence 23 6666665 3567788888 988 99999999999999999999874
|
| >2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.00051 Score=75.12 Aligned_cols=118 Identities=10% Similarity=0.001 Sum_probs=79.9
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhcCC-CCccchHHHHHhhcCCC-----CC-CchhheeeeeecCCCC----CC-CCCcc
Q 004815 18 EALGIPSKLAEQLHEKLAEIVNTHGA-ATPATWQNITTHILSPD-----LP-FSFHQLLYYGCYKDFG----PD-PPAWI 85 (729)
Q Consensus 18 ~~~~~~~~~~~~f~~~l~~~~~~~~~-~hq~~Pfe~lv~~l~~~-----r~-~~~~~~~f~~~~~~~~----~~-~~~~~ 85 (729)
.++++..+.+.+|.++|+++++...+ .||++||+ +++.|+.. +. ...++++|+++..... ++ .....
T Consensus 310 lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~ 388 (466)
T 2xhg_A 310 YPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYD-ILKHVTLPENRGSLSFRVQPEVTFNYLGQFDADMRTELFTRSPY 388 (466)
T ss_dssp EEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHH-HHHHTSCGGGSTTCCCCCCCSEEEEEEEECCTTCSSSSCEECTT
T ss_pred ccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccc-eeeecccccccccccccCCCeEEEeecCcccccccCCceecccc
Confidence 45666666778999999999988755 89999999 56777653 22 2334577776642110 00 00000
Q ss_pred CC-------------hhhhhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhc
Q 004815 86 PD-------------PEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEM 141 (729)
Q Consensus 86 ~~-------------~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 141 (729)
+. ......++|.+.+...++++...+ |+. ++|++.+|+++.++|.++|+.+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l 453 (466)
T 2xhg_A 389 SGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAI 453 (466)
T ss_dssp CTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHH
Confidence 00 011136677776655677788888 988 9999999999999999999986
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=2.2 Score=45.42 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=78.2
Q ss_pred CCCCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCCEEEe
Q 004815 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVS 264 (729)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~~~vv~~LA~l~aGa~~vp 264 (729)
..++.+|.+....| .+|. ...+|.+.+...+..+++.+...|+.++|++..+++-+ ...+..+++.+..|+..++
T Consensus 87 ~~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSG-TTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCC-TTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 35677776554432 2332 35789999998888888888889999999999999853 4445567888999999998
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecc
Q 004815 265 IADSFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 265 ldp~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
+++. ..+++...+++.++.+++..+.
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHH
Confidence 7654 7888999999999999988764
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=89.60 E-value=2.5 Score=45.13 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=77.7
Q ss_pred CCCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCCEEEec
Q 004815 190 SLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVSI 265 (729)
Q Consensus 190 ~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~~~vv~~LA~l~aGa~~vpl 265 (729)
.++.+|.+....| .+|. ...+|.+.+...+..+++.+...|++++|++..+++-+ ...+..+++.+..|+..+++
T Consensus 90 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 90 PREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp CGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred ChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 5667775554432 2333 35789999998888888888889999999999998863 44455678889999999988
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEecc
Q 004815 266 ADSFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 266 dp~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
++. ..+++...+++.++++++....
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHH
Confidence 664 7888999999999999988764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=2.2 Score=45.42 Aligned_cols=98 Identities=17% Similarity=0.051 Sum_probs=78.1
Q ss_pred CCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--CHHHHHHHHHHHHcCCEEEecCC
Q 004815 192 DDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM--NVNSVVIYLAIVLAGYIVVSIAD 267 (729)
Q Consensus 192 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~--s~~~vv~~LA~l~aGa~~vpldp 267 (729)
+.+|.+....| .+|. ...+|.+.+...+..+++.+...|+.++|++..+++- ....+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSG-TTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSG-TTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSC-SSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCC-cCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 77887665443 2332 3578999999999999998989999999999999874 44556677889999999998765
Q ss_pred CCCHHHHHHHHHhcCceEEEEecc
Q 004815 268 SFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
. ..+++...+++.++++++....
T Consensus 165 ~-~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 165 G-NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp C-CHHHHHHHHHHHTCCEEECCHH
T ss_pred C-CHHHHHHHHHHHCCCEEEECHH
Confidence 4 6688899999999999888764
|
| >1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=83.82 E-value=0.023 Score=60.79 Aligned_cols=100 Identities=9% Similarity=-0.060 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcCC--CCccch-----HHHHHhhcCCCCCCchhheeeeeecCCCCCCCCCccCCh--------hh-
Q 004815 27 AEQLHEKLAEIVNTHGA--ATPATW-----QNITTHILSPDLPFSFHQLLYYGCYKDFGPDPPAWIPDP--------EA- 90 (729)
Q Consensus 27 ~~~f~~~l~~~~~~~~~--~hq~~P-----fe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~~~~~~~~~--------~~- 90 (729)
+.+|.++++++++...+ +||++| |+++++.+++ ..|+ +++|. |+...+. ....++. ..
T Consensus 297 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~--~~pl-~~~~~--n~~~~~~-~~~~~~~~~~~~~~~~~~ 370 (422)
T 1q9j_A 297 NTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPP--GLPP-LVFCT--DATSFPT-MRTPPGLEIEDIKGQFYC 370 (422)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGGGGGCCCS--SSCC-CEEEE--CCCCCCS-CCCCTTCEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCeeeecccchHHHhcccCC--CCCc-eEEEe--cCCcCCC-CCCCCCceeEeeeccccc
Confidence 35789999999998877 999994 9999999874 3455 56542 3221000 0000100 11
Q ss_pred hhhCcHHHH-HHHhccccccCCCCCCCCCHHHHHHHHhhChHHHHHHHHhhc
Q 004815 91 AKVTNVGKL-LQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEM 141 (729)
Q Consensus 91 ~~~~~l~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 141 (729)
...++|.+. +...++++...+|+. + .+++++.++|.++|+++
T Consensus 371 ~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l 413 (422)
T 1q9j_A 371 SISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTV 413 (422)
T ss_dssp BSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHT
T ss_pred CCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHh
Confidence 345666655 444555555555766 3 78899999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 729 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-90 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 3e-80 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 8e-56 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 4e-50 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 8e-46 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 6e-45 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-40 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 0.002 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 294 bits (753), Expect = 2e-90
Identities = 166/615 (26%), Positives = 266/615 (43%), Gaps = 40/615 (6%)
Query: 124 EFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCL 183
+ S+++P+ +W + P Q + N N +W +N A NCL
Sbjct: 25 KQSINDPDTFWGEQGKI--LDWITPYQKVK----NTSFAPGNVSIKWYEDGTLNLAANCL 78
Query: 184 SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMP 243
+ + + D I W EGD K ++ +EL +V A L LG+ KG +AI MP
Sbjct: 79 DRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMP 136
Query: 244 MNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYS 303
M + V LA G + I F+ ++ + S ++ + T D +R +SIPL
Sbjct: 137 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKK 196
Query: 304 RVIDAQA-----PLAIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLKENEFAAVEQPVE 357
V DA + VI K + + ++G D+ W D +E+ + E E P+
Sbjct: 197 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPL- 255
Query: 358 AFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH-MDIRKADIVAWPTNLGWMMG-PWL 415
IL++SG+TG+PK + T AA + + D DI ++GW+ G +L
Sbjct: 256 ---FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYL 312
Query: 416 VYASLLNGASIALYNGSPL---GSGFAKFVQDAKVTMLGVVPSIVRTWKSTN--CIDGYD 470
+Y L GA+ ++ G P + + V +V +L P+ +R + I+G D
Sbjct: 313 LYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD 372
Query: 471 WSSIRCFGSTGEASNVDEYLWLMGR--ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAF 528
SS+R GS GE N + + W + PV++ TE GGF+ L A L A
Sbjct: 373 RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET-GGFMITPLPGAIELKAG 431
Query: 529 S--TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSR 586
S P G + ++ N+G P G L ++ G + TL F
Sbjct: 432 SATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFG---DHERFEQTYFS 486
Query: 587 NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIG 646
+ + GD R GYY GR DD +N+ G ++ + EIE A + E A +G
Sbjct: 487 TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPK-IAEAAVVG 545
Query: 647 VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRT 706
+P G V + +P ++R + V+K++ PL + SLP+T
Sbjct: 546 IPHAIKGQAIYAYVTLNHGEEPSPELYAEVR----NWVRKEIGPLATPDVLHWTDSLPKT 601
Query: 707 ATNKVMRRVLRKQLA 721
+ K+MRR+LRK A
Sbjct: 602 RSGKIMRRILRKIAA 616
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 267 bits (682), Expect = 3e-80
Identities = 144/622 (23%), Positives = 245/622 (39%), Gaps = 30/622 (4%)
Query: 119 FSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNP 178
+ + S+ +P ++ + + + + + G W +N
Sbjct: 3 YQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSF--QNNAWFLNGQLNA 60
Query: 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYAL-NALGLDKGSA 237
NC+ ++ ++ + I + EGD S+T KEL EV VA L ++G+ KG
Sbjct: 61 CYNCVDRHALKTPNKKAIIF--EGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDT 118
Query: 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDK 297
+A+ MPM +++ LAI G I + F+S + R+ +K + T D RG K
Sbjct: 119 VAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGK 178
Query: 298 SIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKEN-EFAAVEQPV 356
I V DA V + + D K K +
Sbjct: 179 VIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDS 238
Query: 357 EAFTNILFSSGTTGEPKAIP-WTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-W 414
E +L++SG+TG PK + T A D + D+ ++GW+ G +
Sbjct: 239 EDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTY 298
Query: 415 LVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVTMLGVVPSIVRTWKSTN--CIDGY 469
+VY LL G + ++ G+P ++++ + + KVT V P+ +R K I+ +
Sbjct: 299 VVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENH 358
Query: 470 DWSSIRCFGSTGEASNVDEYLWLMGR--ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAA 527
S+RC GS GE + + W + P+++ TE G +T +
Sbjct: 359 SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKP 418
Query: 528 FS--TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY--DVYFSGM 583
S P G +L + G LA+ + T+ + D Y +
Sbjct: 419 GSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 478
Query: 584 PSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETA 643
P GD + GY GR DD +N+ G ++S+ EIE V E A
Sbjct: 479 PG-----YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPI-VAECA 532
Query: 644 AIGVPPPDGGPEQLTIVVVFKD----SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVP 699
+G G + + VV K+ S T +L ++ V+K + P ++
Sbjct: 533 VVGFNDDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIIL 591
Query: 700 LPSLPRTATNKVMRRVLRKQLA 721
+ LP+T + K+MRR+LRK LA
Sbjct: 592 VDDLPKTRSGKIMRRILRKILA 613
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 197 bits (502), Expect = 8e-56
Identities = 105/569 (18%), Positives = 181/569 (31%), Gaps = 56/569 (9%)
Query: 171 LPGAFVNPAKN---CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYAL 227
P ++ N L + V+ G+ V T E+ + L
Sbjct: 2 FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGE----VHRTTYAEVYQRARRLMGGL 57
Query: 228 NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIF 287
ALG+ G +A + + Y A+ G ++ + + EI+ L ++ K +
Sbjct: 58 RALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLL 117
Query: 288 TQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKEN 347
+PL + + + + L +
Sbjct: 118 FD------PNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALG------------E 159
Query: 348 EFAAVEQPVEAFTNILFSSGTTGEPKA--IPWTNATPFKAAADAWCHMDIRKADIVAWPT 405
E V P A + +++GTTG PK AA + + D+V
Sbjct: 160 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVV 219
Query: 406 NLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC 465
+ + L YA+ L GA L + + VT VP++
Sbjct: 220 PMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLE 279
Query: 466 IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL----- 520
G+ ++R G A+ + V + G TE + +
Sbjct: 280 STGHRLKTLRRLVVGGSAAPRSLIARF--ERMGVEVRQGYGLTETSPVVVQNFVKSHLES 337
Query: 521 -----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLNAN 574
+ A P +L + +G P+P++ +GE+ L P I G N
Sbjct: 338 LSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITG--GYYGNEE 395
Query: 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 634
+ R GD+ GY R D + GG +SSV++E
Sbjct: 396 ATRSALTPDG------FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 449
Query: 635 VDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV 694
V E A + +P P E+ VVV + TP +LN+ ++
Sbjct: 450 HPK-VKEAAVVAIPHPKWQ-ERPLAVVVPRGEKPTPEELNE------HLLKAGFAKWQLP 501
Query: 695 SHVVPLPSLPRTATNKVMRRVLRKQLAQL 723
V +PRT+ K ++R LR+Q
Sbjct: 502 DAYVFAEEIPRTSAGKFLKRALREQYKNY 530
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 182 bits (461), Expect = 4e-50
Identities = 97/523 (18%), Positives = 177/523 (33%), Gaps = 39/523 (7%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
++T E +A A+ GL+ I + ++ + L + G V D
Sbjct: 46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 105
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
+ E+ + IS+ +F S ++++ Q L I+ S
Sbjct: 106 YNERELLNSMNISQPTVVFV---------SKKGLQKILNVQKKLPII-QKIIIMDSKTDY 155
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPV---EAFTNILFSSGTTGEPKAIPWTN---ATP 382
G S F+ NE+ V + + I+ SSG+TG PK + +
Sbjct: 156 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVR 215
Query: 383 FKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFV 442
F A D I + G + L+ G + L F + +
Sbjct: 216 FSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEEL-FLRSL 274
Query: 443 QDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVI 502
QD K+ +VP++ + + ID YD S++ S G + + + R +
Sbjct: 275 QDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIR 334
Query: 503 EYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELAL-S 560
+ G TE I + A + ++ D G + N GEL +
Sbjct: 335 QGYGLTET-TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRG 391
Query: 561 PLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGG 620
P+I S +N + GD+ ++ R + G
Sbjct: 392 PMIM---SGYVNNPEATNAL-----IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKG 443
Query: 621 IKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSF 680
+V+ E+E I + + + G+P D G E VVV + ++
Sbjct: 444 YQVAPAELESILLQHPN-IFDAGVAGLPDDDAG-ELPAAVVVLEHG--KTMTEKEIV--- 496
Query: 681 NSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQ 722
V ++ K+ VV + +P+ T K+ R +R+ L +
Sbjct: 497 -DYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 538
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 169 bits (428), Expect = 8e-46
Identities = 90/513 (17%), Positives = 175/513 (34%), Gaps = 55/513 (10%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ +T EL + +A G+ K + + I M +++ + LA++ AG V I
Sbjct: 47 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIE 106
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
+ I L S+A+ + TQ ++ +I +V
Sbjct: 107 YPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVE---------------------- 144
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD 388
F E K++E V ++++SGTTG PK +
Sbjct: 145 -------IFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVF 197
Query: 389 AWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSG--FAKFVQDAK 446
+++ + D + ++ + W ++ +LL GAS+ + + F +++ +
Sbjct: 198 FENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKE 257
Query: 447 VTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 506
+T++ + +D SI+ + G A++ + Y
Sbjct: 258 ITVITLP------PTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTE 311
Query: 507 GTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFG 565
T ++ S+ P +++I+ + GEL + +
Sbjct: 312 TTICATTWVATKETIGHSVPIG-APIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLA- 367
Query: 566 ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSS 625
F P G+ L + GD S G GR D+ + + G +V
Sbjct: 368 -RGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVEL 426
Query: 626 VEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQ 685
E+E I + ETA L V + L QLR
Sbjct: 427 EEVESILLKHMY-ISETAVSVHKDHQEQ-PYLCAYFVSEKH----IPLEQLR----QFSS 476
Query: 686 KKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLR 717
++L P + + S+ + L +P T+ K+ R+ L
Sbjct: 477 EEL-PTYMIPSYFIQLDKMPLTSNGKIDRKQLP 508
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 167 bits (422), Expect = 6e-45
Identities = 88/517 (17%), Positives = 172/517 (33%), Gaps = 37/517 (7%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ +EL +A LG+ + + + +P + A+ G + V S
Sbjct: 49 THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPS 108
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
S EI+ ++A A D G L +V L +I A + + L
Sbjct: 109 HRSSEITYFCEFAEAAAYIIPD-AYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLE 167
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD 388
D L E + S G+TG K IP T+ +
Sbjct: 168 D--------------LHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKR 213
Query: 389 AWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN-GSPLGSGFAKFVQDAKV 447
+ + + + + + A + SP ++ KV
Sbjct: 214 SVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKV 273
Query: 448 TMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG 507
T+ +VP + W D SS++ G + + + + + G
Sbjct: 274 TITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVK-AVFGCTLQQVFGM 332
Query: 508 TEIGGGFITGSLLQAQSLAAFSTP-AMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGA 566
E + + + P + + + + + G L+
Sbjct: 333 AEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGH-------LLTRG 385
Query: 567 SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSV 626
T+ + + + + +G R GD+ T GY GRA D +N GG KV++
Sbjct: 386 PYTIRGYYKAEEHNAASFTEDGF--YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE 443
Query: 627 EIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK 686
E+E A V + A + +P G E+ + ++ +D +L +++
Sbjct: 444 EVENHLLAHP-AVHDAAMVSMPDQFLG-ERSCVFIIPRDEAPKAAELKA-------FLRE 494
Query: 687 KLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQ 722
+ +K+ V + S P+T KV ++ LR+ +++
Sbjct: 495 RGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 154 bits (388), Expect = 1e-40
Identities = 96/535 (17%), Positives = 156/535 (29%), Gaps = 53/535 (9%)
Query: 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVI 251
D + G +T ELRA V VA L+A GL +A+ P + + V+
Sbjct: 17 DHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIA 70
Query: 252 YLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP 311
LA+ G + + S E++ ++ + A VI
Sbjct: 71 ILALHRLGAVPALLNPRLKSAELAELIKRGEMTAA------------------VIAVGRQ 112
Query: 312 LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGE 371
+A I GS + + + ++ I ++SGTTG
Sbjct: 113 VADAIFQSGSGARIIFLGDLVRDGEPYSY-----GPPIEDPQREPAQPAFIFYTSGTTGL 167
Query: 372 PKAIPWTNATPFKAAA----DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIA 427
PKA + P LV A L+G +
Sbjct: 168 PKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227
Query: 428 LYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVD 487
+ P+ + + + + S+R G +
Sbjct: 228 VEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT--MP 285
Query: 488 EYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPI 547
+ + GT + + + A + + I G +
Sbjct: 286 DAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIV 345
Query: 548 PQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYR 607
G +A S F Y + R DV T G R
Sbjct: 346 ANGEEGELIVAASDSAFV---------GYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVR 396
Query: 608 AHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSN 667
GR DD + GG + EIER+ V E IG+ G + +T VV +
Sbjct: 397 ILGRVDDMIISGGENIHPSEIERVLGTAPG-VTEVVVIGLADQRWG-QSVTACVVPRLG- 453
Query: 668 YTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLA 721
+ L + + FK L LP+ A NKV+RR L +Q++
Sbjct: 454 -ETLSADALD----TFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 38.2 bits (88), Expect = 0.002
Identities = 28/204 (13%), Positives = 65/204 (31%), Gaps = 41/204 (20%)
Query: 185 VNSKRSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVW--LVAYALNALGLDKGSAIAI 240
+ ++I ++ G+ K ++ L+ A L +G +
Sbjct: 32 ARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRG----L 87
Query: 241 DMPMNVNSVVIY-------------------LAIVLAGYIVVSIADSFASL------EIS 275
D+P + V + ++ Y V + E+
Sbjct: 88 DLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVR 147
Query: 276 ARLR-ISKAKAIFTQDLIIRGDK----SIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDG 330
L+ + + +D+++R + + Y + + L KG+SF ++
Sbjct: 148 EILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLE---D 204
Query: 331 DISWLDFLERVRKLKENEFAAVEQ 354
D L KL + EF ++++
Sbjct: 205 DSELLSAFIERAKLYDIEFKSIDE 228
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1l5aa2 | 250 | VibH {Vibrio cholerae [TaxId: 666]} | 97.66 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 83.93 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 83.8 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=8.4e-91 Score=799.54 Aligned_cols=583 Identities=26% Similarity=0.405 Sum_probs=484.8
Q ss_pred CCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCCCCe
Q 004815 115 PISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDI 194 (729)
Q Consensus 115 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~ 194 (729)
.+++|+.+++||+++++.||..+++. +.|.++++++++.... ......+||+++++|+++|+|++|++++||++
T Consensus 16 ~~~~y~~l~~~s~~~~~~fW~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~wf~~~~~N~~~n~ldrh~~~~~d~~ 89 (643)
T d1pg4a_ 16 NPEQYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFA----PGNVSIKWYEDGTLNLAANCLDRHLQENGDRT 89 (643)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECC----TTCCEEEESTTCEECHHHHHTGGGHHHHTTSE
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHhh--eeEECCCcccccCccC----CCCCCCeeCCCChhhHHHHHHHHHHHhCCCCE
Confidence 44678999999999999999999987 5788999988876431 11334679999999999999999999999999
Q ss_pred EEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHH
Q 004815 195 VIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEI 274 (729)
Q Consensus 195 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l 274 (729)
|+++.+. ..+..+++||+||+++++++|++|+++||++||+|+|+++|++++++++|||+++||+++|++|.++.+++
T Consensus 90 Ali~~~~--~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l 167 (643)
T d1pg4a_ 90 AIIWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAV 167 (643)
T ss_dssp EEEEECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHH
T ss_pred EEEEEec--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHH
Confidence 9999764 23556789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEecceecCCccccchhhHHhhcC-------CcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccC
Q 004815 275 SARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA-------PLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKEN 347 (729)
Q Consensus 275 ~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (729)
.+++++++++++|+++...+..+.......+...+. ..++++...+...... ......+.+..... ..
T Consensus 168 ~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~ 242 (643)
T d1pg4a_ 168 AGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLIEKA----SP 242 (643)
T ss_dssp HHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCC-BTTEEEHHHHHTTS----CS
T ss_pred HHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccc-cccchhhhhhhccc----Cc
Confidence 999999999999999988887777776665554432 2344444433222111 11223334433322 22
Q ss_pred ccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHH-HHHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCce
Q 004815 348 EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKA-AADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGAS 425 (729)
Q Consensus 348 ~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~ 425 (729)
...+...+++++|||+|||||||+||||+++|++++.. .......++++++|++++.+|++|++++ +.++++|++|++
T Consensus 243 ~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t 322 (643)
T d1pg4a_ 243 EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAT 322 (643)
T ss_dssp CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCE
T ss_pred ccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCE
Confidence 33445567899999999999999999999999996544 4445567899999999999999999997 467899999999
Q ss_pred EEEeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHhccC--C
Q 004815 426 IALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--Y 498 (729)
Q Consensus 426 lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~--~ 498 (729)
++++++. +++..++++|++++||++.++|++++.|++... ....++++||.+++||+++++++++++.+.++ +
T Consensus 323 ~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~ 402 (643)
T d1pg4a_ 323 TLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEK 402 (643)
T ss_dssp EEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTC
T ss_pred EEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCC
Confidence 9998754 367889999999999999999999999987643 34667899999999999999999999988875 5
Q ss_pred CCeeecccccccccccccCCc-ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCc-cccccccc
Q 004815 499 KPVIEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASS-TLLNANHY 576 (729)
Q Consensus 499 ~~l~~~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~-~~~~~~~~ 576 (729)
++++|.||+||++..++...+ ..+...+++|+|++|++++|+|++|++++.|+. |||+|++.+.+... |+++++.+
T Consensus 403 ~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~--Gel~v~~~~p~~~~~~~~~~~~~ 480 (643)
T d1pg4a_ 403 CPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERF 480 (643)
T ss_dssp SCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHH
T ss_pred ceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCce--EEEEEecCCCcccccccCChhhc
Confidence 789999999999876555433 234566899999999999999999999999986 99999765544333 33444544
Q ss_pred cc-ccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004815 577 DV-YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 655 (729)
Q Consensus 577 ~~-~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 655 (729)
.+ +|.. ..+||+|||+|++|+||+|+++||+||+||++|+||+|.|||++|. +||+|.||+|++++++..| +
T Consensus 481 ~~~~~~~-----~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~-~~p~V~eaaVvg~~d~~~g-e 553 (643)
T d1pg4a_ 481 EQTYFST-----FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-Q 553 (643)
T ss_dssp HHHHHSS-----STTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-E
T ss_pred hhhhccc-----CCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEECCCCC-e
Confidence 33 3332 2239999999999999999999999999999999999999999995 9999999999999998887 8
Q ss_pred eEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 656 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 656 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
.++|||++++ +. ....++.+.|+++|+++|++||+|+.|+++++||+|+||||+|++|++++..
T Consensus 554 ~~~a~Vv~~~-~~--~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 617 (643)
T d1pg4a_ 554 AIYAYVTLNH-GE--EPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 617 (643)
T ss_dssp EEEEEEEECT-TC--CCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred EEEEEEEECC-CC--CCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcC
Confidence 9999999988 65 2346677778889999999999999999999999999999999999999875
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-86 Score=765.35 Aligned_cols=591 Identities=24% Similarity=0.357 Sum_probs=470.7
Q ss_pred CCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeEE
Q 004815 117 SSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVI 196 (729)
Q Consensus 117 ~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~Al 196 (729)
++|+.+++||++++++||.++++.. +.|.+++++++........ .......||+++.+|++++||++|++++||++|+
T Consensus 1 ~~y~~l~~~Si~~~~~Fw~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~wf~~~~lN~~~n~ldr~a~~~pd~~Al 78 (640)
T d1ry2a_ 1 QDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGR-PSFQNNAWFLNGQLNACYNCVDRHALKTPNKKAI 78 (640)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCS-BCSTTCCBSTTCEECHHHHHTHHHHTTCTTSEEE
T ss_pred CCHHHHHHHHHhCHHHHHHHHHHhh-eeEecCCeEeeccCCccCC-CCCCCCcCCCCCchhHHHHHHHHHHhhCCCCEEE
Confidence 3689999999999999999998886 7899999988765432111 1234568999999999999999999999999999
Q ss_pred EEeecCCCCCCceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHH
Q 004815 197 RWCDEGDGGLPVKSMTLKELRAEVWLVAYALN-ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEIS 275 (729)
Q Consensus 197 ~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~ 275 (729)
++.+. ..+..+++||+||+++++++|++|+ ++||++||+|+|+++|++++++++|||+++|++++|++|.++.+++.
T Consensus 79 i~~~~--~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~ 156 (640)
T d1ry2a_ 79 IFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLR 156 (640)
T ss_dssp EEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHH
T ss_pred EEEec--CCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHH
Confidence 98754 2456679999999999999999997 67999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEEEecceecCCccccchhhHHhhcCC-----cEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccc
Q 004815 276 ARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-----LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 350 (729)
Q Consensus 276 ~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (729)
++++++++++++++.......+.......+.+.... ....+.................+...... ......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 232 (640)
T d1ry2a_ 157 DRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKK----YKTYYP 232 (640)
T ss_dssp HHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTT----SCSCCC
T ss_pred HHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccccccccccc----cccccc
Confidence 999999999999999877777666655544433221 12222222111111111111122222111 122334
Q ss_pred cccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHH-HHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEEE
Q 004815 351 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAA-ADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 428 (729)
Q Consensus 351 ~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl 428 (729)
..+..++++++|+|||||||.||||+++|++++... ......++++++|++++.+|++|+++. +.++++|+.|+++++
T Consensus 233 ~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 312 (640)
T d1ry2a_ 233 CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLV 312 (640)
T ss_dssp CCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEE
T ss_pred cCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEE
Confidence 445668899999999999999999999999976654 444456889999999999999999997 578899999999999
Q ss_pred eCCCC---ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHhccC--CCCe
Q 004815 429 YNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--YKPV 501 (729)
Q Consensus 429 ~~~~~---~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~--~~~l 501 (729)
+++.. ++..++++|++++||++.++|++++.|.+... ....++++||.+++||+++++++++++.+.++ ..++
T Consensus 313 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i 392 (640)
T d1ry2a_ 313 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPI 392 (640)
T ss_dssp ECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCE
T ss_pred ecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceE
Confidence 87543 67889999999999999999999999987643 34567999999999999999999999998876 3579
Q ss_pred eecccccccccccccCCc--ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCC-ccccccccccc
Q 004815 502 IEYCGGTEIGGGFITGSL--LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGAS-STLLNANHYDV 578 (729)
Q Consensus 502 ~~~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~-~~~~~~~~~~~ 578 (729)
++.||+||++..+..... ..+...+++|+|++|++++|+|+++.....+..+.|||++.+...+.. .|+++++.+.+
T Consensus 393 ~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~ 472 (640)
T d1ry2a_ 393 VDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLD 472 (640)
T ss_dssp EECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHH
T ss_pred EeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHh
Confidence 999999999876544333 234566899999999999999987654433322349999954322222 24567777665
Q ss_pred ccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 579 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
.|..+ +.+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++
T Consensus 473 ~~~~~----~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~d~~~g-e~~~ 546 (640)
T d1ry2a_ 473 TYLNP----YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG-QAVA 546 (640)
T ss_dssp HHTSS----STTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-CCCE
T ss_pred hhccC----CCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-eEEE
Confidence 55432 2239999999999999999999999999999999999999999995 9999999999999998888 8999
Q ss_pred EEEEecCCCCCC-----CChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 659 IVVVFKDSNYTP-----PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 659 a~vv~~~~~~~~-----~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
|||++++ +... ....++++.|+++++++|++||+|+.|+++++||+|+||||+|++|+++++.
T Consensus 547 a~Vv~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 614 (640)
T d1ry2a_ 547 AFVVLKN-KSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 614 (640)
T ss_dssp EEEEEC-------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred EEEEEcC-CCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhC
Confidence 9999987 4311 1124577888889999999999999999999999999999999999998764
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.3e-74 Score=648.72 Aligned_cols=514 Identities=19% Similarity=0.182 Sum_probs=383.1
Q ss_pred cCCCCcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Q 004815 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSV 249 (729)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~v 249 (729)
|......| ..++|+++++++||++|+++... ++.+++||+||+++++++|++|.++|+++||+|+|+++|+++++
T Consensus 5 ~~~~~~~~-l~~~l~~~a~~~pd~~av~~~~~----g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~ 79 (534)
T d1v25a_ 5 TMMDEELN-LWDFLERAAALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL 79 (534)
T ss_dssp CBCCCCCC-THHHHHHHHHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred ccCCCCCC-HHHHHHHHHHHcCCCeEEEEecC----CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHH
Confidence 43344444 45689999999999999998765 45568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCC
Q 004815 250 VIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRD 329 (729)
Q Consensus 250 v~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 329 (729)
+++|||+++|++++|++|.++.+++.++++++++++++++.... .....+..........+....... .
T Consensus 80 ~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~ 148 (534)
T d1v25a_ 80 EAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKAP-----E 148 (534)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCCC-----T
T ss_pred HHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhh------hhHHHHhhcccccceeEEeecccc-----c
Confidence 99999999999999999999999999999999999999987532 223333333332222222111110 0
Q ss_pred CCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHH--hhCCCCCCCEEEEccCc
Q 004815 330 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW--CHMDIRKADIVAWPTNL 407 (729)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~d~~l~~~~~ 407 (729)
...... .. ...........++++++++|||||||.||||+++|.+++....... ..+.+..+|++++.+|+
T Consensus 149 ~~~~~~--~~-----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~ 221 (534)
T d1v25a_ 149 GYLAYE--EA-----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPM 221 (534)
T ss_dssp TCEEHH--HH-----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCT
T ss_pred cccccc--cc-----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccch
Confidence 011110 00 1112233456788999999999999999999999999987654443 34567889999999999
Q ss_pred chhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHh
Q 004815 408 GWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVD 487 (729)
Q Consensus 408 ~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~ 487 (729)
.|..+....+.+++.|+++++.....++..+..++.++++|++.++|+++..++........++++||.+++||+++++.
T Consensus 222 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~ 301 (534)
T d1v25a_ 222 FHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRS 301 (534)
T ss_dssp TSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHH
T ss_pred hhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHH
Confidence 99999988888999999999988778889999999999999999999999999876555566789999999999999999
Q ss_pred HHHHHHhccCCCCeeecccccccccccccCCccc----------ccccccccCCCCCcEEEEEcCCCCccCCCCCceeEE
Q 004815 488 EYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ----------AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGEL 557 (729)
Q Consensus 488 ~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel 557 (729)
..+++.+. +.++++.||+||++..++...... ....+++|+|++|++++|+|++|++++.+..++|||
T Consensus 302 ~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel 379 (534)
T d1v25a_ 302 LIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEV 379 (534)
T ss_dssp HHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEE
T ss_pred HHHHHHHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCeeEEE
Confidence 99888754 468999999999998765443211 123468999999999999999999998854446999
Q ss_pred EeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCC
Q 004815 558 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 637 (729)
Q Consensus 558 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p 637 (729)
+|.+..+..+ |+++++.++..|..++ ||+|||+|++++||.++++||+||+||++|++|+|.|||++|. +||
T Consensus 380 ~v~g~~v~~g-Y~~~~~~t~~~~~~dg------~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~ 451 (534)
T d1v25a_ 380 QLKGPWITGG-YYGNEEATRSALTPDG------FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHP 451 (534)
T ss_dssp EEESTTSBSS-CBTCHHHHHTTBCTTS------CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC------
T ss_pred EEcCCcccce-ecCChhhhhhhcccCC------CCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHH-hCC
Confidence 9966554433 4567778877776433 9999999999999999999999999999999999999999994 999
Q ss_pred CeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 638 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 638 ~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
+|.||+|++++++..+ +.++|+|++++ +. ...+++.+. .+++.||+|++|+.|+++++||+|++|||||++|+
T Consensus 452 ~V~~a~v~~~~~~~~~-~~l~a~vv~~~-~~--~~~~~~~~~---~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr 524 (534)
T d1v25a_ 452 KVKEAAVVAIPHPKWQ-ERPLAVVVPRG-EK--PTPEELNEH---LLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALR 524 (534)
T ss_dssp -----CEEEEECSSSS-EEEEECC-------------------------CCCTTTSCSBC--------------CCTTHH
T ss_pred CcceEEEEEEECCCCC-eEEEEEEEeCC-CC--CCHHHHHHH---HHHhcCCcCCCccEEEEECCCCCCCCccccHHHHH
Confidence 9999999999998888 89999999876 32 233444433 36788999999999999999999999999999999
Q ss_pred HHHHhh
Q 004815 718 KQLAQL 723 (729)
Q Consensus 718 ~~~~~~ 723 (729)
+++.++
T Consensus 525 ~~~~~~ 530 (534)
T d1v25a_ 525 EQYKNY 530 (534)
T ss_dssp HHSTTS
T ss_pred HHHHhh
Confidence 998763
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=2.1e-72 Score=636.33 Aligned_cols=511 Identities=17% Similarity=0.152 Sum_probs=397.5
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...+.+++++ ..|+++|+++.+.+ +++||+||+++++++|++|+++||++||+|+|+++|++++++++|||++
T Consensus 22 ~l~~~~~~~~-~~P~~~a~~d~~~~------~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~ 94 (541)
T d1lcia_ 22 QLHKAMKRYA-LVPGTIAFTDAHIE------VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 94 (541)
T ss_dssp HHHHHHHHHH-TSTTCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCCeEEEEeCCCC------eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 3344444444 34999999875442 3899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
+|++++|+++.++.+++.++|++++++++|++++. .+...++...++....++....... ......+.+.
T Consensus 95 ~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 164 (541)
T d1lcia_ 95 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG------LQKILNVQKKLPIIQKIIIMDSKTD----YQGFQSMYTF 164 (541)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGG------HHHHHHHHHHCTTCCEEEETTCSSC----BTTBEEHHHH
T ss_pred hCeEEEecCCCCCHHHHHHHHHhccceEEeeeccc------cccchhccccccccceeeeecCCcc----ccccchhhhh
Confidence 99999999999999999999999999999999853 2334444555554333332221110 1223344444
Q ss_pred HHHhhcc---ccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh---CCCCCCCEEEEccCcchhh
Q 004815 338 LERVRKL---KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTNLGWMM 411 (729)
Q Consensus 338 ~~~~~~~---~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~ 411 (729)
....... .....+.....++++|||+|||||||.||||+++|++++....+.... ..+.+++++++.+|+.|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 244 (541)
T d1lcia_ 165 VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGF 244 (541)
T ss_dssp HHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHH
T ss_pred hhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccccc
Confidence 4433211 111223344557899999999999999999999999998776665543 3678899999999999999
Q ss_pred hHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHH
Q 004815 412 GPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 491 (729)
Q Consensus 412 ~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~ 491 (729)
+....+..+..|+..+... ..+......++.++++|.+.++|+++..+++.......++++||.+++||+++++...++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~ 323 (541)
T d1lcia_ 245 GMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEA 323 (541)
T ss_dssp HHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHH
T ss_pred ccccccccccccccccccc-ccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccc
Confidence 9988888888888887654 356677889999999999999999999999887777778899999999999999999999
Q ss_pred HHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccccCCCccc
Q 004815 492 LMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTL 570 (729)
Q Consensus 492 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~~~~~ 570 (729)
+.++++...+++.||+||++..++.... .....+++|+|++|++++|+|+ +|++++.|++ |||+|.+..+..+ |+
T Consensus 324 ~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~--Gel~v~g~~~~~g-Y~ 399 (541)
T d1lcia_ 324 VAKRFHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSG-YV 399 (541)
T ss_dssp HHHHTTCSCCBCEECCGGGSSCSEECCC-C---CCCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSE-ET
T ss_pred cccccCCceeeecCCccccCceEEecCc-ccCCCCccccccCCCEEEEEECCCCcCCCCCCe--EEEEEccCccCCe-eC
Confidence 9888877789999999999987655443 3456679999999999999995 5899999997 9999976554433 34
Q ss_pred ccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCC
Q 004815 571 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650 (729)
Q Consensus 571 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 650 (729)
++++.+...|.. ++||+|||+|++++||.++++||.||+||++|++|+|.|||++|. +||+|.+|+|++++++
T Consensus 400 ~~~~~~~~~~~~------~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~ 472 (541)
T d1lcia_ 400 NNPEATNALIDK------DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDD 472 (541)
T ss_dssp TBHHHHHHHBCT------TSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEET
T ss_pred CChhhhhhcccC------CccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECC
Confidence 555555555543 349999999999999999999999999999999999999999995 9999999999999988
Q ss_pred CCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCC-CccceEEeCCCCCCCCCChhhHHHHHHHHHhhh
Q 004815 651 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPL-FKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724 (729)
Q Consensus 651 ~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~-~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~ 724 (729)
..| ++++|+|++++ +. ..+.+++++ +|+++|+++ ++|..|+++++||+|++|||||++|++++.+-+
T Consensus 473 ~~g-~~~~a~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~ 540 (541)
T d1lcia_ 473 DAG-ELPAAVVVLEH-GK-TMTEKEIVD----YVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 540 (541)
T ss_dssp TTE-EEEEEEEEECT-TC-CCCHHHHHH----HHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHHT
T ss_pred CCC-EEEEEEEEECC-CC-CCCHHHHHH----HHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHhC
Confidence 777 89999999987 55 567677666 466777766 579999999999999999999999999988754
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=5.7e-71 Score=620.75 Aligned_cols=482 Identities=19% Similarity=0.202 Sum_probs=403.2
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
+..++|+++++++||++|++++++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 24 tl~~l~~~~a~~~Pd~~Al~~~~~--------~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~ 95 (514)
T d1amua_ 24 TIHQLFEEQVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLK 95 (514)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 466889999999999999999877 999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
+|++++|++|.++.+++.+++++++++++|++.... ..+.................
T Consensus 96 ~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~~~~~--------------- 151 (514)
T d1amua_ 96 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV---------HLIHNIQFNGQVEIFEEDTI--------------- 151 (514)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHTTSCCCSEEEECCCSTT---------------
T ss_pred hCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhh---------hhhhhhcccccccccccccc---------------
Confidence 999999999999999999999999999999987532 11111111122211111000
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~ 417 (729)
. .........+..++++|+|+|||||||.||+|+++|+++..........++..++|++++..++.|..+++.++
T Consensus 152 --~---~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 226 (514)
T d1amua_ 152 --K---IREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMF 226 (514)
T ss_dssp --T---TSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHH
T ss_pred --c---ccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccccc
Confidence 0 01112223445688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 418 ASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 418 ~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
.++..|+++++.... .+....++.+..+.++.+..+|...... ...++++++.+++||+++++++..++..
T Consensus 227 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~G~~~~~~~~~~~~~- 299 (514)
T d1amua_ 227 MALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGSATSPSLVNKWKE- 299 (514)
T ss_dssp HHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEEEEESSCCCHHHHHHHTT-
T ss_pred ccccccccccccccccccchhhhhhhhhhhhcccccceeeecccc------cccccccccEEEEecccCCHHHhhhhcc-
Confidence 999999999987532 2445678899999999999999875532 3455889999999999999999887765
Q ss_pred cCCCCeeecccccccccccccCCc--ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSL--LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 573 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~ 573 (729)
+..+++.||+||++.+++.... .......+.|.++++..+.+.|++++++|.|+. |||+|.+..+..+ |++++
T Consensus 300 --~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~--GEl~v~~~~~~~g-Y~~~~ 374 (514)
T d1amua_ 300 --KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARG-YWKRP 374 (514)
T ss_dssp --TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCE-ETTCH
T ss_pred --ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCe--eEEEEccCccccc-ccccc
Confidence 4679999999999986544333 233345678899999999999999999999996 9999965544332 45677
Q ss_pred cccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004815 574 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 653 (729)
Q Consensus 574 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 653 (729)
+.+.+.|..+++.++++||+|||+|++|+||+|+++||+||+||++|++|+|.+||++|. +||+|.+|+|++.+++..|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~-~~~~V~~~~V~~~~~~~~g 453 (514)
T d1amua_ 375 ELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ 453 (514)
T ss_dssp HHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC
T ss_pred cccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC
Confidence 888888998888888999999999999999999999999999999999999999999995 9999999999999998888
Q ss_pred ceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHH
Q 004815 654 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718 (729)
Q Consensus 654 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~ 718 (729)
+.++|+|++++ ..+.+++++ +++++|++|++|..|+++++||+|++|||+|++|++
T Consensus 454 -~~~~a~v~~~~----~~~~~~l~~----~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 454 -PYLCAYFVSEK----HIPLEQLRQ----FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp -EEEEEEEEESS----CCCHHHHHH----HHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred -EEEEEEEEcCC----CCCHHHHHH----HHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 89999999887 346666665 577889999999999999999999999999999986
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=5.6e-70 Score=615.59 Aligned_cols=501 Identities=18% Similarity=0.192 Sum_probs=404.7
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
+..++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 26 tl~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~ 97 (536)
T d1mdba_ 26 TFGDLLRDRAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (536)
T ss_dssp CHHHHHHHHHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCeEEEECCE--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 357889999999999999999876 999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCc-EEEEcCCCCCcccccCCCCcCHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPL-AIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
+|++++|++|.++.+++.+++++++++++++++........ ............. ......... ....+.+
T Consensus 98 ~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 168 (536)
T d1mdba_ 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR-SLARQVQSKLPTLKNIIVAGEAE--------EFLPLED 168 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHH-HHHHHHHHHCTTCCCEEEESCCT--------TSEEGGG
T ss_pred hCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhh-hhhhhhhhccccccceeeeeccc--------cccchhh
Confidence 99999999999999999999999999999998753211100 1111111111111 111111100 1111111
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH--
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-- 414 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-- 414 (729)
+ ........+..++++++|+|||||||.||||++||+++...+.+....+++.++|++++..++.|.+++.
T Consensus 169 ~-------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~ 241 (536)
T d1mdba_ 169 L-------HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSP 241 (536)
T ss_dssp C-------CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSS
T ss_pred c-------ccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeec
Confidence 0 1112233456789999999999999999999999999999999998999999999999999999999874
Q ss_pred HHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 415 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 415 ~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
.++..+..|.+++. ...+++..++..+++++++.+..+|..+..+..........+++++.+++||+++++....++..
T Consensus 242 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~ 320 (536)
T d1mdba_ 242 GVLGVLYAGGRVVL-SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKA 320 (536)
T ss_dssp HHHHHHHTTCEEEE-CSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHH
T ss_pred cccccccccccccc-cCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhh
Confidence 33344444555554 44578889999999999999999999999887765555667899999999999999999998887
Q ss_pred ccCCCCeeecccccccccccccCCcccccccccccCCCC-CcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccc
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAM-GCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 573 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~-~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~ 573 (729)
.++ ......||.+|.+..+...........+++|.|++ +..+.|.+++|++++.|+. |||++.+..+..+| ++++
T Consensus 321 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~--Gel~v~g~~~~~gY-~~~~ 396 (536)
T d1mdba_ 321 VFG-CTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGY-YKAE 396 (536)
T ss_dssp HTC-SEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSC-TTCH
T ss_pred ccC-ceeeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCeeccccc--ceeecCCCcccccc-cccc
Confidence 765 67788888888776665555555556678999975 6677788889999999997 99999766554433 4455
Q ss_pred cccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004815 574 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 653 (729)
Q Consensus 574 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 653 (729)
+.+...+..+ +||+|||+|++++||+|+++||+||+||++|++|+|.|||++|. +||+|.+|+|++++++..|
T Consensus 397 ~~~~~~~~~~------~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~-~~p~V~~a~vvg~~~~~~g 469 (536)
T d1mdba_ 397 EHNAASFTED------GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG 469 (536)
T ss_dssp HHHHHHBCTT------SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE
T ss_pred cccccccccc------CccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEEcCCCC
Confidence 5555555432 39999999999999999999999999999999999999999995 9999999999999988877
Q ss_pred ceeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 654 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 654 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+.++|||++++ +. .+.++++++ +++ .||+|++|..|+++++||+|++|||||++|++++.+
T Consensus 470 -~~~~a~v~~~~-~~--~~~~~l~~~----l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (536)
T d1mdba_ 470 -ERSCVFIIPRD-EA--PKAAELKAF----LRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (536)
T ss_dssp -EEEEEEEEESS-SC--CCHHHHHHH----HHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred -eEEEEEEEECC-CC--CCHHHHHHH----HHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHH
Confidence 88999999887 43 567777765 544 599999999999999999999999999999999875
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.4e-66 Score=581.78 Aligned_cols=495 Identities=20% Similarity=0.169 Sum_probs=395.1
Q ss_pred hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
+..+++|+++++++||++|+++.+.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 75 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALH 75 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCC------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 45678899999999999999997652 489999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHH
Q 004815 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 257 ~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
++|++++|++|.++.+++++++++++++++|++... .....+.+......++. +.+
T Consensus 76 ~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~i~-----------------~~~ 131 (503)
T d3cw9a1 76 RLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-------QVADAIFQSGSGARIIF-----------------LGD 131 (503)
T ss_dssp HHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCH-------HHHHHHHHTTCCCEEEE-----------------HHH
T ss_pred HhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecch-------HHHHHHhhhcccccccc-----------------chh
Confidence 999999999999999999999999999999988641 11122222222222221 112
Q ss_pred HHHHhhc-cccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCC--CCCCCEEEEccCcchhhhH
Q 004815 337 FLERVRK-LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD--IRKADIVAWPTNLGWMMGP 413 (729)
Q Consensus 337 ~~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~ 413 (729)
+...... ............++++++++|||||||.||+|+++|+++...+......+. ....++++..+|+.|..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 211 (503)
T d3cw9a1 132 LVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211 (503)
T ss_dssp HEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHH
T ss_pred hhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccc
Confidence 1111110 011123334567899999999999999999999999999988877766554 4566899999999888776
Q ss_pred H-HHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcC--CCCCCCCCCccEEEeecCCCCHhHHH
Q 004815 414 W-LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN--CIDGYDWSSIRCFGSTGEASNVDEYL 490 (729)
Q Consensus 414 ~-~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~--~~~~~~l~sLr~v~~gGe~l~~~~~~ 490 (729)
. ..+.+...++++++.+ ..++..++.++.+++++.+..+|+.+..+.... ......+++||.+++||++++++...
T Consensus 212 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~ 290 (503)
T d3cw9a1 212 FAVLVAALALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLE 290 (503)
T ss_dssp HTTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHH
T ss_pred cccccccccccccccccc-ccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccc
Confidence 4 4556666676766654 467888999999999999999999988775532 23445578999999999999999998
Q ss_pred HHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccc
Q 004815 491 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 570 (729)
Q Consensus 491 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~ 570 (729)
++...++ ..+.+.||.||++..+....... ......+.+.+.....+.+..++.++.|+. |++.+........+++
T Consensus 291 ~~~~~~~-~~~~~~yg~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--g~~~~~~~~~~~~~~~ 366 (503)
T d3cw9a1 291 TVHQHLP-GEKVNIYGTTEAMNSLYMRQPKT-GTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYL 366 (503)
T ss_dssp HHHHHCC-SEEEEEEEETTTEEEEEEESCSS-SSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBT
T ss_pred ccccccc-ccccccccccccceeeeeccccc-cccccccccccceeeeeecccCcccCCCcc--cccccccccccccccc
Confidence 8887665 67999999999987654433322 223344556666777777788999999998 8777744433333455
Q ss_pred ccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCC
Q 004815 571 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650 (729)
Q Consensus 571 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 650 (729)
++++.+++.|.+ | ||+|||+|++++||+|+++||+||+||++|++|+|.|||++| .+||+|.+|+|++.+++
T Consensus 367 ~~~~~t~~~~~~-----g--~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l-~~~p~V~~~~v~~~~~~ 438 (503)
T d3cw9a1 367 NQPQATAEKLQD-----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL-GTAPGVTEVVVIGLADQ 438 (503)
T ss_dssp TCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHH-TTSTTEEEEEEEEEEET
T ss_pred CChhhhHHHhcC-----C--ceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHH-HhCCCccEEEEEEEECC
Confidence 677777776642 3 999999999999999999999999999999999999999999 59999999999999988
Q ss_pred CCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHH
Q 004815 651 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 720 (729)
Q Consensus 651 ~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~ 720 (729)
..| +.++|||++++ +. ..+.++++++++ +++||+|++|+.|+++++||+|++|||+|++|++++
T Consensus 439 ~~g-~~~~a~v~~~~-~~-~~~~~~l~~~~~---~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 439 RWG-QSVTACVVPRL-GE-TLSADALDTFCR---SSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp TTE-EEEEEEEEECT-TC-CCCHHHHHHHHH---HSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred CCC-eEEEEEEEeCC-CC-CCCHHHHHHHHH---hcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 877 88999999987 65 577777776532 367999999999999999999999999999999986
|
| >d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=97.66 E-value=2.7e-07 Score=90.02 Aligned_cols=125 Identities=6% Similarity=-0.104 Sum_probs=88.0
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCC-CCchhheeeeeecCCCC--CCCCCccCChhhh
Q 004815 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDL-PFSFHQLLYYGCYKDFG--PDPPAWIPDPEAA 91 (729)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r-~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~~ 91 (729)
..++++...++.+|.++|+++++...+ .||++||+.|++.++..+ ..++|+++|+...+... ++...........
T Consensus 104 ~lP~r~~~~~~~t~~~ll~~v~~~~~~~~~h~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (250)
T d1l5aa2 104 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASG 183 (250)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCTTCCBCCCSEEEEECCCCCCCTTCEEEEEEEEEC
T ss_pred eeeEEEEeCCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhcCCCCCCCccceEEEeeccCccCCCCCceEEEeeecc
Confidence 346667777788999999999998877 999999999999997655 56889988877665530 0000000011112
Q ss_pred hhCcHHHHHHHh-ccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhccccee
Q 004815 92 KVTNVGKLLQTR-GEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFS 146 (729)
Q Consensus 92 ~~~~l~~~~~~~-~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 146 (729)
...|+.+.+... ++.+...+ |+. ++|.+++|+++..+|..+|+++...++
T Consensus 184 ~~~dl~l~v~~~~~~~l~l~~~y~~-----~~~~~~~i~~l~~~~~~ll~~l~~~p~ 235 (250)
T d1l5aa2 184 SAEGINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQ 235 (250)
T ss_dssp CCCSEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeEEEEEEEcCCceEEEEEEEeh-----hhCCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 234566555443 44567777 988 999999999999999999999743333
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=83.93 E-value=4.4 Score=41.53 Aligned_cols=102 Identities=14% Similarity=-0.022 Sum_probs=76.8
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHH---HHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++...+|. .-.+|...+... +.......|++++|++....+-+... +..+++++..|+..+..+.
T Consensus 24 ~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 97 (534)
T d1v25a_ 24 FGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 97 (534)
T ss_dssp STTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred cCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 56788876665542 234677766443 44444567999999998888877663 4567799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHHHHh
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKS 462 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~ 462 (729)
....+.+...++..++..++........+..
T Consensus 98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (534)
T d1v25a_ 98 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128 (534)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred CCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence 7777889999999999999988877766544
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=83.80 E-value=1.1 Score=46.41 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=79.0
Q ss_pred EEeccCCCCCCceEEeCCchHHHHHH---HHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhH
Q 004815 362 ILFSSGTTGEPKAIPWTNATPFKAAA---DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGF 438 (729)
Q Consensus 362 i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l 438 (729)
+.++.+.+| +.+|++.+...+. ......|+.++|++...++-+... +..+++.+..|+..+..+.....+.+
T Consensus 37 ~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~-~v~~lA~~~~G~i~vpl~~~~~~~~l 111 (541)
T d1lcia_ 37 IAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNEREL 111 (541)
T ss_dssp EEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSST-HHHHHHHHHHTCEEEECCTTCCHHHH
T ss_pred EEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCeEEEecCCCCCHHHH
Confidence 444555544 4578877654433 334557999999998877766543 44566899999999998877778899
Q ss_pred HHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecC
Q 004815 439 AKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGE 482 (729)
Q Consensus 439 ~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe 482 (729)
...++..+++++++....+..+.+.. ..++.++.+++...
T Consensus 112 ~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 151 (541)
T d1lcia_ 112 LNSMNISQPTVVFVSKKGLQKILNVQ----KKLPIIQKIIIMDS 151 (541)
T ss_dssp HHHHHHHCCSEEEECGGGHHHHHHHH----HHCTTCCEEEETTC
T ss_pred HHHHHhccceEEeeeccccccchhcc----ccccccceeeeecC
Confidence 99999999999999998877665432 12345565655443
|