Citrus Sinensis ID: 004816
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 729 | 2.2.26 [Sep-21-2011] | |||||||
| P34422 | 740 | Dipeptidyl peptidase fami | no | no | 0.337 | 0.332 | 0.287 | 3e-21 | |
| P39839 | 657 | Uncharacterized peptidase | yes | no | 0.314 | 0.348 | 0.273 | 7e-17 | |
| P13676 | 732 | Acylamino-acid-releasing | yes | no | 0.297 | 0.296 | 0.293 | 3e-16 | |
| Q8R146 | 732 | Acylamino-acid-releasing | yes | no | 0.294 | 0.293 | 0.299 | 5e-16 | |
| P80227 | 730 | Acylamino-acid-releasing | yes | no | 0.314 | 0.313 | 0.286 | 3e-15 | |
| P13798 | 732 | Acylamino-acid-releasing | yes | no | 0.285 | 0.284 | 0.278 | 4e-15 | |
| P19205 | 732 | Acylamino-acid-releasing | yes | no | 0.293 | 0.292 | 0.297 | 7e-15 | |
| Q9YBQ2 | 582 | Acylamino-acid-releasing | no | no | 0.248 | 0.310 | 0.313 | 3e-12 | |
| Q95WU5 | 761 | Dipeptidyl-peptidase 4 OS | N/A | no | 0.318 | 0.304 | 0.221 | 7e-10 | |
| Q0C8V9 | 723 | Probable dipeptidyl-pepti | N/A | no | 0.320 | 0.323 | 0.232 | 2e-08 |
| >sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 128/271 (47%), Gaps = 25/271 (9%)
Query: 447 DTLKYKSYFSLPELIEF--PTEVP-GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT 503
D + ++Y SLP ++VP G + YA + + A P++ ++V HGGP
Sbjct: 389 DEMTIQAYLSLPPQAPLLKSSQVPDGDRPYA-----NLGMIPAVPQK---MIVLVHGGPK 440
Query: 504 SEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV 563
+ + + T+RG++ + VN+ GSTG+G+ G WG D F V
Sbjct: 441 ARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHFDILDAVEFAV 500
Query: 564 GSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYI 622
G A+ + + GGS GGY TL AL F TF G + G ++L L + +
Sbjct: 501 SKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQAIPPYWLGFR 560
Query: 623 DNL---VGSE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 672
+L VG++ + +SP+ F D+ + PI++ QG D V ++ + AL+
Sbjct: 561 KDLIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGANDPRVKQAESDQFVAALE 620
Query: 673 ENGLPVALVEYEGEQHGFRKAENIKFTLEQQ 703
+ +PV + Y E HG RK +N ++EQ
Sbjct: 621 KKHIPVTYLLYPDEGHGVRKPQN---SMEQH 648
|
Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration. Caenorhabditis elegans (taxid: 6239) EC: 3EC: .EC: 4EC: .EC: 1EC: 4EC: .EC: - |
| >sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 109/249 (43%), Gaps = 20/249 (8%)
Query: 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSI 514
S+PE I++ TE G + P+ Q E PL++ HGGP
Sbjct: 398 ISIPEEIQYATE-DGVMVNGWLMRPA----QMEGETTYPLILNIHGGPHMMYGHTYFHEF 452
Query: 515 QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRL 573
Q ++G+A V +N GS GYG+EF + G +G D +D + D KRL
Sbjct: 453 QVLAAKGYAVVYINPRGSHGYGQEFVNAVRGDYGGKDYDDVMQAVDEAIKRDPHIDPKRL 512
Query: 574 CITGGSAGGYTTLAALAFRDTFKAGA---------SLYGVADLSMLRAETHKFESRYIDN 624
+TGGS GG+ T + + FKA S +GV+D+ + + D
Sbjct: 513 GVTGGSYGGFMTNWIVGQTNRFKAAVTQRSISNWISFHGVSDIGYFFTDWQLEHDMFED- 571
Query: 625 LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 684
+EK +++SP+ + P+++ G D P +QA +++ ALK+ G LV +
Sbjct: 572 ---TEK-LWDRSPLKYAANVETPLLILHGERDDRCPIEQAEQLFIALKKMGKETKLVRFP 627
Query: 685 GEQHGFRKA 693
H +
Sbjct: 628 NASHNLSRT 636
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 474 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 533
A PSNP + + P++V HGGP S L G+A + VNY GST
Sbjct: 486 AILLQPSNP----PDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGST 541
Query: 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT--------- 584
G+G++ L G G DV D ++ D +R+ + GGS GG+
Sbjct: 542 GFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYP 601
Query: 585 -TLAALAFRDTFKAGASLYGVADL-SMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 642
T +A R+ AS+ G D+ ET S + ++ +KSPI ++
Sbjct: 602 ETYSACIARNPVINIASMMGSTDIPDWCMVETGFPYSNSCLPDLNVWEEMLDKSPIKYIP 661
Query: 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694
+ P++L G ED+ VP Q + Y+ALK +PV L+ Y H + E
Sbjct: 662 QVKTPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSNHALSEVE 713
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 19/234 (8%)
Query: 474 AYYYPPSNPIYQASPEE-KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 532
A PSN SP++ + P++V HGGP S L G+A + VNY GS
Sbjct: 486 AILLQPSN-----SPDKSQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGS 540
Query: 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT-------- 584
TG+G++ L G G DV D ++ D +R+ + GGS GG+
Sbjct: 541 TGFGQDSILSLPGNVGHQDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQY 600
Query: 585 --TLAALAFRDTFKAGASLYGVADL-SMLRAET-HKFESRYIDNLVGSEKDYYEKSPINF 640
T +A R+ S+ G D+ ET + + Y+ +L E + +KSPI +
Sbjct: 601 PETYSACIARNPVINIVSMMGTTDIPDWCMVETGFPYSNDYLPDLNVLE-EMLDKSPIKY 659
Query: 641 VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694
+ + P++L G ED+ VP Q + Y ALK +PV L+ Y H + E
Sbjct: 660 IPQVKTPVLLMLGQEDRRVPFKQGLEYYHALKARNVPVRLLLYPKSTHALSEVE 713
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P80227|ACPH_BOVIN Acylamino-acid-releasing enzyme OS=Bos taurus GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 479 PSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538
PSNP + + P++V HGGP S L G+A + VNY GSTG+G++
Sbjct: 489 PSNP----PDKTQVPMVVMPHGGPHSSFVTSWMLLPAMLCKMGFAALLVNYRGSTGFGQD 544
Query: 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT----------TLAA 588
L G G DV D ++ D R+ + GGS GG+ T A
Sbjct: 545 SILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALLGGSHGGFLSCHLIGQYPETYGA 604
Query: 589 LAFRDTFKAGASLYG---VADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 645
R+ AS+ G + D ++ A D V SE KSPI + +
Sbjct: 605 CVVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPDPNVWSE--MLNKSPIKYTPQVK 662
Query: 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 705
P++L G ED+ VP Q + Y+ALK +PV L+ Y H + E + ++
Sbjct: 663 TPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSTHSLSEVEVESDSFMNAVI 722
Query: 706 FFARVVGH 713
+ +GH
Sbjct: 723 WMCTHLGH 730
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 15/223 (6%)
Query: 486 ASPEEKP--PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL 543
SP +K P++V HGGP S L G+A + VNY GSTG+G++ L
Sbjct: 492 GSPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSL 551
Query: 544 LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLY 602
G G DV D ++ D + + GGS GG+ + + + +T++A +
Sbjct: 552 PGNVGHQDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRACVARN 611
Query: 603 GVADLSMLRAETH-----------KFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILF 651
V +++ + T F S + +L + +KSPI ++ + P++L
Sbjct: 612 PVINIASMLGSTDIPDWCVVEAGFPFSSDCLPDL-SVWAEMLDKSPIRYIPQVKTPLLLM 670
Query: 652 QGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694
G ED+ VP Q + Y+ALK +PV L+ Y H + E
Sbjct: 671 LGQEDRRVPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVE 713
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 103/235 (43%), Gaps = 21/235 (8%)
Query: 474 AYYYPPSNPIYQASPEE-KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 532
A PSN SPE+ + P++V HGGP S L G+A + VNY GS
Sbjct: 486 AILLQPSN-----SPEKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGS 540
Query: 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT-------- 584
TG+G++ L G G DV D ++ D R+ + GGS GG+
Sbjct: 541 TGFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQY 600
Query: 585 --TLAALAFRDTFKAGASLYG---VADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPIN 639
T +A R+ AS+ G + D M+ A + S + +L +KSPI
Sbjct: 601 PETYSACVVRNPVINIASMMGSTDIPDWCMVEA-GFSYSSDCLPDL-SVWAAMLDKSPIK 658
Query: 640 FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694
+ + P++L G ED+ VP Q + Y+ LK +PV L+ Y H + E
Sbjct: 659 YAPQVKTPLLLMLGQEDRRVPFKQGMEYYRVLKARNVPVRLLLYPKSTHALSEVE 713
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q9YBQ2|APEH_AERPE Acylamino-acid-releasing enzyme OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_1547.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 552
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 553 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 611
D + A + SG A E L I G S GGY TL AL + FKAG + V D +
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMY 478
Query: 612 AETHKFESRYIDNLVGSEKDYYE-KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 670
+ +I+ L G ++ +SPIN VD+ P+ L D P ++
Sbjct: 479 ELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGE 538
Query: 671 LKENG 675
L G
Sbjct: 539 LLARG 543
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q95WU5|DPP_GIAIN Dipeptidyl-peptidase 4 OS=Giardia intestinalis GN=DPP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 25/257 (9%)
Query: 449 LKYKSYFSLPELIEFPTE-VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR 507
L++ PE P++ P Q +++Y+ P+N + PL++ HGGP S
Sbjct: 490 LRHIDELQEPEEFYLPSKSFPDQYVHSWYFAPAN----LRDSHEYPLILYVHGGPESPWA 545
Query: 508 GILNL--SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW---GIVDVNDCCSCATFL 562
+ + Q +RG+ + N+ GS+ +G F++ + G W + D+ D S
Sbjct: 546 NSWSYRWNPQLIAARGYGVLATNFHGSSSFGEVFQKSVRGNWYSYPLEDIMDAWSNIYTH 605
Query: 563 VGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY----GVADLSMLRAETHK-- 616
+++C G S G + + ++ + Y GV D ET +
Sbjct: 606 ADKAYLSREKVCAMGASFGA----TFMNYMNSHVNNVTCYVTHDGVFDTMCNALETDELF 661
Query: 617 FESR-----YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL 671
F R +D V +++ Y + +P FV+ S P+++ G +D + +++AL
Sbjct: 662 FPVRELGGFLLDEQVDNQQLYEKWNPARFVENMSAPMLVIHGQKDYRIQVYHGISLFQAL 721
Query: 672 KENGLPVALVEYEGEQH 688
+ G+ LV + + H
Sbjct: 722 RLRGIKTKLVYFPTQSH 738
|
May be involved in metabolism of dipeptides or may affect host defense mechanisms. Giardia intestinalis (taxid: 5741) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|Q0C8V9|DPP5_ASPTN Probable dipeptidyl-peptidase 5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dpp5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 99/250 (39%), Gaps = 16/250 (6%)
Query: 490 EKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547
+K PL HGGP S + + + + +G+ V N GSTG+G+E + + W
Sbjct: 469 KKYPLFFYIHGGPQSATPDSWSTRWNAKVFADQGYVVVAPNPTGSTGFGQELTDAIANNW 528
Query: 548 GIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTT--LAALAFRDTFKAGASLYG- 603
G D ++ + D + G S GG+ + FKA G
Sbjct: 529 GGAPYEDLVKAWEYVDKNLPYVDTENGVAAGASYGGFMINWIQGSDLGRKFKALVCHDGT 588
Query: 604 -VADLSMLRAETHKFESRYIDNLVGSEKDY--YEKSPINFVDKFSCPIILFQGLEDKVVP 660
VAD + E E + G+ +Y ++ S + +FS P ++ +D +P
Sbjct: 589 FVADAKISTEELWFIEHDFNGTFWGARDNYRRWDPSAPERILQFSTPQLVIHSDQDYRLP 648
Query: 661 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG-------H 713
+ ++ L+E G+P + + E H K EN +Q + + R G
Sbjct: 649 VAEGLAMFNVLQERGVPSRFLNFPDENHWVLKQENSLVWHQQMLGWLNRYSGIEEANPDA 708
Query: 714 FDVADEIIPI 723
+ D IIP+
Sbjct: 709 VSLDDTIIPV 718
|
Extracellular dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 729 | ||||||
| 225458521 | 675 | PREDICTED: uncharacterized protein LOC10 | 0.921 | 0.995 | 0.806 | 0.0 | |
| 255538410 | 731 | acylamino-acid-releasing enzyme, putativ | 0.987 | 0.984 | 0.744 | 0.0 | |
| 224067282 | 672 | predicted protein [Populus trichocarpa] | 0.916 | 0.994 | 0.796 | 0.0 | |
| 225458519 | 677 | PREDICTED: uncharacterized protein LOC10 | 0.916 | 0.986 | 0.795 | 0.0 | |
| 356527044 | 681 | PREDICTED: uncharacterized protein LOC10 | 0.928 | 0.994 | 0.780 | 0.0 | |
| 357459569 | 732 | Acyl-peptide hydrolase-like protein [Med | 0.991 | 0.987 | 0.720 | 0.0 | |
| 449446971 | 734 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.980 | 0.715 | 0.0 | |
| 145358557 | 730 | alpha/beta-hydrolase domain-containing p | 0.901 | 0.9 | 0.774 | 0.0 | |
| 9759033 | 678 | acyl-peptide hydrolase-like [Arabidopsis | 0.920 | 0.989 | 0.759 | 0.0 | |
| 356567356 | 674 | PREDICTED: uncharacterized protein LOC10 | 0.914 | 0.989 | 0.744 | 0.0 |
| >gi|225458521|ref|XP_002284264.1| PREDICTED: uncharacterized protein LOC100262703 [Vitis vinifera] gi|302142369|emb|CBI19572.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/682 (80%), Positives = 605/682 (88%), Gaps = 10/682 (1%)
Query: 51 MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
MAST+ + +DK+TAP+GSWKSP+TADVVSGA KRLGGTAVD GRLI+LESRPT
Sbjct: 1 MASTA-------SAEDKLTAPFGSWKSPITADVVSGAEKRLGGTAVDARGRLIFLESRPT 53
Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
E+GR VLVKE KAG+EP DITPKE++VRT AQEYGGGAF+I GDTVIFSNYKDQRLYK
Sbjct: 54 ESGRSVLVKESGKAGEEPIDITPKEFSVRTVAQEYGGGAFKISGDTVIFSNYKDQRLYKQ 113
Query: 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230
SI S+ SSP PITPDYG P V YADG+FD RF+R++TVREDRR+ +LN T IVAI L
Sbjct: 114 SISSEYSSPSPITPDYGGPAVCYADGVFDSRFDRFITVREDRRESSLNPITTIVAIDLRD 173
Query: 231 QNIQ---VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 287
NIQ VLV+G+DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGD+ KR
Sbjct: 174 NNIQEPKVLVAGNDFYAFPRLDPKGERLAWIEWSHPNMPWDKTELWVGYISENGDICKRT 233
Query: 288 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 347
CVAGFDP ++ESPTEPKWSSKGELFF+TDRK+GFWNLH+WIESNNEV+A+YS+DAEF+RP
Sbjct: 234 CVAGFDPKLLESPTEPKWSSKGELFFITDRKSGFWNLHRWIESNNEVVAVYSMDAEFARP 293
Query: 348 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGN 407
LW+FG+NSYE +QSHG+K LIACSYRQNGRSY+GILD SLSLLD PFTDI+NIT G
Sbjct: 294 LWIFGMNSYEFLQSHGQKELIACSYRQNGRSYIGILDAVQSSLSLLDTPFTDINNITSGT 353
Query: 408 DCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEV 467
+ +VEGAS V P SVAKVTLDD K K VDFK++ SSSPD+ KYKSYFSLPE IEFPTEV
Sbjct: 354 EFFYVEGASTVHPLSVAKVTLDDQKSKVVDFKIIRSSSPDSSKYKSYFSLPEFIEFPTEV 413
Query: 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV 527
PGQ AYAY+YPPSNPIYQA EE+PPLL+KSHGGPTSE RGILNLSIQYWTSRGWAFVDV
Sbjct: 414 PGQNAYAYFYPPSNPIYQAGQEERPPLLLKSHGGPTSETRGILNLSIQYWTSRGWAFVDV 473
Query: 528 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA 587
NYGGSTGYGRE+RERLLGRWGIVDVNDCCSCA FLV SGK D RLCITGGSAGGYTTLA
Sbjct: 474 NYGGSTGYGREYRERLLGRWGIVDVNDCCSCARFLVESGKVDGDRLCITGGSAGGYTTLA 533
Query: 588 ALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCP 647
ALAFR+TFKAGASLYGVADLS+LRAETHKFES YIDNLVG E DY+E+SPINFVDKFSCP
Sbjct: 534 ALAFRETFKAGASLYGVADLSLLRAETHKFESHYIDNLVGGESDYFERSPINFVDKFSCP 593
Query: 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707
IILFQGLEDKVVPP QARKIY+ALKE GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF
Sbjct: 594 IILFQGLEDKVVPPVQARKIYQALKEKGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 653
Query: 708 ARVVGHFDVADEIIPIKIDNFD 729
AR+VGHF VADEI PIKIDNFD
Sbjct: 654 ARLVGHFKVADEITPIKIDNFD 675
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538410|ref|XP_002510270.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] gi|223550971|gb|EEF52457.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/728 (74%), Positives = 619/728 (85%), Gaps = 8/728 (1%)
Query: 7 SAITTLTRFSASSSSASINFKYIFSRRTVFTASPKR---QKQRGCKIMASTSPVPETYSA 63
S+ TLTR S + +++ FK R + ++ Q+Q K MAS++ P ++
Sbjct: 5 SSAITLTRLSYYHTCSTL-FKLSHQIRILTCPISRKRYQQRQHNYKTMASSTQ-PLESAS 62
Query: 64 TQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAK 123
Q+ APYGSWKSP+TADVVSGASKRLGGTAVDG+GRL WLESRPTEAGR VLVKE K
Sbjct: 63 KQETTAAPYGSWKSPITADVVSGASKRLGGTAVDGNGRLFWLESRPTEAGRSVLVKEADK 122
Query: 124 AGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPIT 183
GD+ +DITPK+Y+VR+TAQEYGGGAF I GDTVIF+NYKDQRLYK S+DS+DS P+P+T
Sbjct: 123 QGDKTTDITPKDYSVRSTAQEYGGGAFTISGDTVIFANYKDQRLYKQSVDSRDSPPVPLT 182
Query: 184 PDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ---VLVSGS 240
PDYG P VSYADG+FD FNR+VT+ EDRR ++++ T IV + L+ +NIQ VL+SG+
Sbjct: 183 PDYGSPSVSYADGVFDSLFNRFVTIMEDRRLSSMDAVTTIVTVGLSDENIQEPKVLLSGN 242
Query: 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 300
DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGDVYKR+CVAG D +VESP
Sbjct: 243 DFYAFPRIDPKGERIAWIEWGHPNMPWDKTELWVGYISENGDVYKRICVAGCDTAVVESP 302
Query: 301 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQ 360
TEPKWSS GELFF+TDR++GFWNL+KW+ES NEV A+Y L AEFSRPLWVFG NSYE+IQ
Sbjct: 303 TEPKWSSTGELFFITDRRSGFWNLYKWVESVNEVQALYPLAAEFSRPLWVFGTNSYELIQ 362
Query: 361 SHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEP 420
++ K+LIACSYRQ GRSYLGILD SLSLLDIPFTDIDNI+ GN+CL++EGAS V P
Sbjct: 363 NNEGKHLIACSYRQKGRSYLGILDYAESSLSLLDIPFTDIDNISSGNNCLYIEGASAVHP 422
Query: 421 SSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPS 480
SVAK+ LDD K DFK+VWSSSPD+LKY SYFSLPE IEFPTEVPGQ AYAY+YPPS
Sbjct: 423 PSVAKLDLDDRGSKVADFKIVWSSSPDSLKYASYFSLPEFIEFPTEVPGQNAYAYFYPPS 482
Query: 481 NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540
NP+YQASPEEKPPLL+KSHGGPT + RGILN SIQYWTSRGWAFVDVNYGGSTGYGRE+R
Sbjct: 483 NPMYQASPEEKPPLLLKSHGGPTGDTRGILNPSIQYWTSRGWAFVDVNYGGSTGYGREYR 542
Query: 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 600
ERL+ WGI DVNDCCSCA FLV +GKAD +RLCITGGSAGGYTTLAALAF++TFKAGAS
Sbjct: 543 ERLIKNWGITDVNDCCSCAKFLVDTGKADGERLCITGGSAGGYTTLAALAFKETFKAGAS 602
Query: 601 LYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVP 660
LYGVADLSMLRAETHKFES YIDNLVG EKDY+E+SPINFVD FSCPIILFQGLEDKVV
Sbjct: 603 LYGVADLSMLRAETHKFESHYIDNLVGDEKDYFERSPINFVDGFSCPIILFQGLEDKVVA 662
Query: 661 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADEI 720
PDQAR IY ALK+ G+PVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR+VGHF+VADEI
Sbjct: 663 PDQARTIYNALKKKGVPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARLVGHFNVADEI 722
Query: 721 IPIKIDNF 728
PIK+DN
Sbjct: 723 TPIKVDNI 730
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224067282|ref|XP_002302446.1| predicted protein [Populus trichocarpa] gi|222844172|gb|EEE81719.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1131 bits (2926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/683 (79%), Positives = 607/683 (88%), Gaps = 15/683 (2%)
Query: 51 MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
MAS++ V + +A QDKITAPYGSWKSP+TADVVSGASKRLGG AVD HG L W+ESRP+
Sbjct: 1 MASSTQVADA-TAKQDKITAPYGSWKSPITADVVSGASKRLGGIAVDDHGHLFWVESRPS 59
Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
E+GR VLV+E K G+EP+DITPKE+AVRTTAQEYGGGAF I DTVI+SNYKDQRLYK
Sbjct: 60 ESGRAVLVREADKPGEEPTDITPKEFAVRTTAQEYGGGAFTISADTVIYSNYKDQRLYKQ 119
Query: 171 SIDSK-DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229
SI SK DSSP+P+TPDYG P+VSYADG+FD RFNR+VTV EDRR + NSTT IVA+ L+
Sbjct: 120 SIKSKVDSSPVPLTPDYGGPVVSYADGVFDLRFNRFVTVMEDRRVSSTNSTTTIVAVGLS 179
Query: 230 GQNIQ---VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR 286
++IQ VLVSG+DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGDV+ R
Sbjct: 180 DKSIQEPKVLVSGNDFYAFPRIDPKGERIAWIEWGHPNMPWDKTELWVGYISENGDVHNR 239
Query: 287 VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 346
+CVAG DPT+VESPTEPKWSSKGELFF+TDRK+GFWNL+KWIES NEV AIYSLDAEFS
Sbjct: 240 ICVAGCDPTLVESPTEPKWSSKGELFFITDRKSGFWNLYKWIESVNEVQAIYSLDAEFST 299
Query: 347 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLG 406
PLW+FGINSYE+IQ++ KNLIACSYRQNGRS+LGILDD SLSLLDIPFTDI+++T
Sbjct: 300 PLWIFGINSYELIQNNEGKNLIACSYRQNGRSFLGILDDVQSSLSLLDIPFTDINHMTSW 359
Query: 407 NDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE 466
N CL+VEGAS + PSSVAKV D ++WSSSPD+LKYKSYFSLPELIEFPTE
Sbjct: 360 NRCLYVEGASAIHPSSVAKVLQD----------IIWSSSPDSLKYKSYFSLPELIEFPTE 409
Query: 467 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 526
VPGQ AYAY+YPPSNPIYQAS EEKPPLL+KSHGGPTSE RGILNLSIQYWTSRGWAFVD
Sbjct: 410 VPGQNAYAYFYPPSNPIYQASQEEKPPLLLKSHGGPTSETRGILNLSIQYWTSRGWAFVD 469
Query: 527 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 586
VNYGGSTGYGRE+RERLL +WGIVDVNDCCSC FLV +GK D +RLCITGGSAGGYTTL
Sbjct: 470 VNYGGSTGYGREYRERLLNKWGIVDVNDCCSCGKFLVDNGKVDSERLCITGGSAGGYTTL 529
Query: 587 AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC 646
AALAF++TFKAGASLYGVADLSMLRAETHKFES YIDNLVG+E+DY+E+SPINFVD+FSC
Sbjct: 530 AALAFKETFKAGASLYGVADLSMLRAETHKFESHYIDNLVGTEEDYFERSPINFVDRFSC 589
Query: 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 706
PIILFQGLEDKVVPPDQARKIY ALK+ GLPVALVEYEGEQHGFRKAENIKFTLEQQM+F
Sbjct: 590 PIILFQGLEDKVVPPDQARKIYLALKKKGLPVALVEYEGEQHGFRKAENIKFTLEQQMLF 649
Query: 707 FARVVGHFDVADEIIPIKIDNFD 729
FAR+VG F VADEI PI+IDN D
Sbjct: 650 FARLVGRFTVADEIDPIRIDNLD 672
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458519|ref|XP_002284254.1| PREDICTED: uncharacterized protein LOC100267853 [Vitis vinifera] gi|302142370|emb|CBI19573.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1124 bits (2908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/671 (79%), Positives = 594/671 (88%), Gaps = 3/671 (0%)
Query: 62 SATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEP 121
+A+QDK+TAPYGSWKSP+TAD+VSGA KRLGGTAVDG GRLIWLE+RPTE+GRGVLVKE
Sbjct: 7 AASQDKVTAPYGSWKSPITADIVSGADKRLGGTAVDGDGRLIWLETRPTESGRGVLVKES 66
Query: 122 AKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP 181
AG EP DITPKE++VRT AQEYGGG F+I G T++FSNY DQRLYK SI S D SP+P
Sbjct: 67 ETAGGEPIDITPKEFSVRTVAQEYGGGDFKISGHTLLFSNYTDQRLYKQSISSGDPSPVP 126
Query: 182 ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ---VLVS 238
ITPDYGE V YADGIFD RF+RYVTVRED R+ +LN +T IVAI L+ NIQ VLV
Sbjct: 127 ITPDYGEQAVRYADGIFDSRFDRYVTVREDSRESSLNPSTTIVAIDLSDNNIQEPKVLVG 186
Query: 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 298
GSDFYAFPRMD +GER+AWIEW HPNMPWDKAELWVGYISENGD+ KR+CVAG DPT++E
Sbjct: 187 GSDFYAFPRMDSKGERIAWIEWSHPNMPWDKAELWVGYISENGDICKRICVAGCDPTLLE 246
Query: 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 358
SPTEPKWSS+GELFF+TDRK+GFWNL++WIES+NEV+A+Y+LDAEFSRPLWVFGI+SYE
Sbjct: 247 SPTEPKWSSRGELFFITDRKSGFWNLYRWIESSNEVVAVYALDAEFSRPLWVFGISSYEF 306
Query: 359 IQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGV 418
+QS G+K LI CSYRQNGRSYLGILD LS LDIPFTDI+NI+ G DC ++EGAS V
Sbjct: 307 LQSGGQKELIVCSYRQNGRSYLGILDVVNSLLSALDIPFTDINNISSGIDCFYIEGASAV 366
Query: 419 EPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYP 478
P S+AKVTLDDHK +AV FK++WSSS D +YKSYFSLPELIEFPTEVPGQ AYAY+YP
Sbjct: 367 HPLSLAKVTLDDHKSEAVGFKIIWSSSADISEYKSYFSLPELIEFPTEVPGQNAYAYFYP 426
Query: 479 PSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538
PSNPIYQAS +EKPPLL++SHGGPT EA LNLSIQYWTSRGWAFVDVNYGGSTGYGRE
Sbjct: 427 PSNPIYQASQDEKPPLLLESHGGPTDEAHQSLNLSIQYWTSRGWAFVDVNYGGSTGYGRE 486
Query: 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 598
FRERLLGRWGIVDVNDCCSCA FLV SGK D KRLC TGGSAGG+TTLAALAF++ FKAG
Sbjct: 487 FRERLLGRWGIVDVNDCCSCAKFLVDSGKVDGKRLCATGGSAGGFTTLAALAFKEIFKAG 546
Query: 599 ASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKV 658
ASLYG+ADLSMLRA KFES YIDNLVGSE Y+E+SPINFVDKFSCPIILFQGLEDKV
Sbjct: 547 ASLYGIADLSMLRAGMPKFESHYIDNLVGSESAYFERSPINFVDKFSCPIILFQGLEDKV 606
Query: 659 VPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVAD 718
VPP+QARKIY ALK+ GLPVALV+YEGEQHGFRKAENIKFTLEQQMVFFARVVGHF+VAD
Sbjct: 607 VPPEQARKIYLALKKKGLPVALVQYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFEVAD 666
Query: 719 EIIPIKIDNFD 729
+I PIKIDNFD
Sbjct: 667 QITPIKIDNFD 677
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527044|ref|XP_003532124.1| PREDICTED: uncharacterized protein LOC100784480 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1120 bits (2898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/683 (78%), Positives = 599/683 (87%), Gaps = 6/683 (0%)
Query: 51 MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
MAS++ T + ++ITAPYGSWKSP+T DVVSGASKRLGGTAVDG GRLIWLESRP
Sbjct: 1 MASSAAT--TIPSLSERITAPYGSWKSPITTDVVSGASKRLGGTAVDGRGRLIWLESRPA 58
Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
E+GRGVLV EP G E DITPKE+ VRT AQEYGGGAF + GD V F+NYKDQRLYK
Sbjct: 59 ESGRGVLVVEPENPGGEAVDITPKEFGVRTVAQEYGGGAFTVSGDVVFFANYKDQRLYKQ 118
Query: 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL-- 228
SI S D P+P+TPDYG P+VSYADGI D RFNR+++VREDR + + N TT IV+IAL
Sbjct: 119 SISSLDVPPIPLTPDYGGPVVSYADGILDVRFNRFISVREDRCESSQNPTTTIVSIALGS 178
Query: 229 -NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 287
+ Q QVLV GSDFYAFPR+DP+ ERMAWI+W HPNMPWDK+ELWVGYISENG++YKRV
Sbjct: 179 KDAQEPQVLVGGSDFYAFPRLDPKSERMAWIQWSHPNMPWDKSELWVGYISENGEIYKRV 238
Query: 288 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 347
CVAG +P++VESPTEPKWSS GELFF+TDR+NGFWNLHKWIES N+VL +YSL+AEF+RP
Sbjct: 239 CVAGNNPSLVESPTEPKWSSDGELFFITDRENGFWNLHKWIESENKVLPVYSLEAEFARP 298
Query: 348 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLSLLDIPFTDIDNITLG 406
LW+FG+NSYE +QSH KNLIACSYRQ G+SYLGI+DD G L++LDIPFTDIDNIT
Sbjct: 299 LWIFGMNSYEFLQSHTRKNLIACSYRQQGKSYLGIIDDVKGSKLTVLDIPFTDIDNITSS 358
Query: 407 NDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE 466
N+ LFVEGAS V PSSVAKVTLD+ K KAVDF ++WSSSPD+LKY SYFS PELIEFPTE
Sbjct: 359 NNYLFVEGASAVHPSSVAKVTLDNDKSKAVDFNIIWSSSPDSLKYSSYFSKPELIEFPTE 418
Query: 467 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 526
VPGQ AYAY+YPP+NP +QAS EEKPPLL+KSHGGPT+E RGILNLSIQYWTSRGWAFVD
Sbjct: 419 VPGQNAYAYFYPPTNPDFQASEEEKPPLLLKSHGGPTAETRGILNLSIQYWTSRGWAFVD 478
Query: 527 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 586
VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT+LV SGK D +RLCITGGSAGGYTTL
Sbjct: 479 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATYLVNSGKVDGERLCITGGSAGGYTTL 538
Query: 587 AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC 646
AALAF++TFKAGASLYGVAD++MLRAETHKFES YID L G EK YE+SPIN VDKFSC
Sbjct: 539 AALAFKETFKAGASLYGVADVNMLRAETHKFESHYIDRLGGGEKGCYERSPINHVDKFSC 598
Query: 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 706
PIILFQGL+DKVVPP+QARKIY+ALKE G+PVALVEYEGEQHGFRKAENIKFTLEQQMVF
Sbjct: 599 PIILFQGLDDKVVPPEQARKIYQALKEKGVPVALVEYEGEQHGFRKAENIKFTLEQQMVF 658
Query: 707 FARVVGHFDVADEIIPIKIDNFD 729
FAR+VGHF+VAD+I PIKIDNFD
Sbjct: 659 FARLVGHFNVADDINPIKIDNFD 681
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357459569|ref|XP_003600065.1| Acyl-peptide hydrolase-like protein [Medicago truncatula] gi|355489113|gb|AES70316.1| Acyl-peptide hydrolase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/738 (72%), Positives = 614/738 (83%), Gaps = 15/738 (2%)
Query: 1 MAISLLSAIT--TLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVP 58
MA SA+T TLTR S+SSS S K +F+ F++ Q+ R C ST+
Sbjct: 1 MATLASSALTLITLTRSSSSSSHYS---KCLFNH---FSSKTHHQRSRFCSFNTSTTKTM 54
Query: 59 ETYS--ATQDKIT-APYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRG 115
+Y+ + D IT APYGSWKSP+TADVVSGASKRLGGTAVDG GRLIWLESRPTE+GR
Sbjct: 55 ASYTPPSESDTITTAPYGSWKSPITADVVSGASKRLGGTAVDGRGRLIWLESRPTESGRA 114
Query: 116 VLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSK 175
VLV EP G E DITPKE+ VRT AQEYGGGAF + GD V F+NYKDQRLYK SI S
Sbjct: 115 VLVLEPENPGGEAVDITPKEFGVRTLAQEYGGGAFTVAGDVVFFANYKDQRLYKQSITSL 174
Query: 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--- 232
D P+P+TPDYG P+VSYADG+ D RFNR++ VREDRR+ + N T IV+IAL ++
Sbjct: 175 DVPPIPLTPDYGGPVVSYADGVLDTRFNRFIAVREDRRESSQNPPTTIVSIALGSKDDHE 234
Query: 233 IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF 292
+VLV GSDFYAFPR+ P+ E++AWI+W HPNMPWDK+ELWVGYISENG++YKRVCVAG
Sbjct: 235 PEVLVGGSDFYAFPRLGPKSEKIAWIQWSHPNMPWDKSELWVGYISENGEIYKRVCVAGN 294
Query: 293 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFG 352
DP++VESPTEPKWSS GELFF+TDR +GFWNLHKWIES N+ + +YSLDAEF+RPLWVFG
Sbjct: 295 DPSVVESPTEPKWSSDGELFFITDRGSGFWNLHKWIESENKAVPVYSLDAEFARPLWVFG 354
Query: 353 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLSLLDIPFTDIDNITLGNDCLF 411
+NSYE ++S ++NLIACSYRQ G SYLGI++D G +LS+LDIPFTDIDNIT G DCLF
Sbjct: 355 MNSYEFVKSPKQRNLIACSYRQKGVSYLGIIEDAQGSNLSVLDIPFTDIDNITSGTDCLF 414
Query: 412 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 471
VEGAS V PSSVAKV LDD K K VDF ++WSSSPD+LKY SY S PELIEFPTEVPGQ
Sbjct: 415 VEGASAVLPSSVAKVALDDKKSKVVDFNIIWSSSPDSLKYSSYISKPELIEFPTEVPGQN 474
Query: 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 531
AYAY+YPPSNP Y+A EKPPLL+KSHGGPT+E GILNLSIQYWTSRGWAF DVNYGG
Sbjct: 475 AYAYFYPPSNPTYRAIEGEKPPLLLKSHGGPTAETHGILNLSIQYWTSRGWAFADVNYGG 534
Query: 532 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 591
STGYGRE+R+RLLGRWGIVDVNDCCSCAT+LV SGK D +RLCITGGSAGGYTTLAALAF
Sbjct: 535 STGYGREYRDRLLGRWGIVDVNDCCSCATYLVDSGKVDGERLCITGGSAGGYTTLAALAF 594
Query: 592 RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILF 651
+DTFKAGASLYGVADL +L ETHKFES YIDNLVG EK ++E+SPIN VDKFSCPIILF
Sbjct: 595 KDTFKAGASLYGVADLKLLVEETHKFESHYIDNLVGGEKAWFERSPINHVDKFSCPIILF 654
Query: 652 QGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711
QGLEDKVVPP QAR+IY+ALK+ G+PVAL+EYEGEQHGFRKAENIK+TLEQQM+FFAR++
Sbjct: 655 QGLEDKVVPPSQAREIYQALKKKGVPVALIEYEGEQHGFRKAENIKYTLEQQMLFFARLI 714
Query: 712 GHFDVADEIIPIKIDNFD 729
G F+VAD+I P+KI+NFD
Sbjct: 715 GRFNVADDITPVKIENFD 732
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446971|ref|XP_004141243.1| PREDICTED: uncharacterized protein LOC101211004 [Cucumis sativus] gi|449498688|ref|XP_004160606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226296 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1090 bits (2818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/732 (71%), Positives = 613/732 (83%), Gaps = 12/732 (1%)
Query: 8 AITTLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMA-------STSPVPET 60
A+ L RF + SS NF + +R ++ T S ++Q + K M +T+ P
Sbjct: 5 ALLRLFRFPSPSSLFISNFNPL-NRASINTLSTRKQFRSYNKTMTSSMSSSPNTTNDPPQ 63
Query: 61 YSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKE 120
S KITAPYGSW SP+TADVV+GASKRLGGTAV +G LIWLESRPTE+GRGVLVKE
Sbjct: 64 LSDQLPKITAPYGSWSSPITADVVTGASKRLGGTAVTANGHLIWLESRPTESGRGVLVKE 123
Query: 121 PAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL 180
K GDEP DITPKE++VR T QEYGGGAF + GD V+FSNY DQRLYK S++S D SP
Sbjct: 124 SVKEGDEPCDITPKEFSVRNTTQEYGGGAFTVAGDIVVFSNYSDQRLYKQSLNS-DLSPQ 182
Query: 181 PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI---QVLV 237
+TPDYG VSYADG+FD RFNR++TV+ED RQ +LN T IV++ L+G++I +VLV
Sbjct: 183 ALTPDYGGRSVSYADGVFDSRFNRFITVQEDGRQSSLNPITTIVSVELDGKDINEPKVLV 242
Query: 238 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 297
G+DFYAFPR+DP+GER+AWIEW HPNMPWDK+ELWVGY+SENG+VYKRVCVAG DP +V
Sbjct: 243 GGNDFYAFPRVDPKGERIAWIEWGHPNMPWDKSELWVGYLSENGEVYKRVCVAGGDPKLV 302
Query: 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYE 357
ESPTEPKWS++GEL+F+TDR+ GFWNL+KW E+NNEV IYSL AEFSRPLWVFG NSY+
Sbjct: 303 ESPTEPKWSAQGELYFITDRQTGFWNLYKWFEANNEVAPIYSLSAEFSRPLWVFGTNSYD 362
Query: 358 IIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASG 417
++++ +N+I CSYRQ GRSYLG+LD+ SLSLLDIPFTDI+NI LG+DC++VEG+SG
Sbjct: 363 LLKTGDGRNIIVCSYRQRGRSYLGVLDETQSSLSLLDIPFTDIENIALGSDCIYVEGSSG 422
Query: 418 VEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYY 477
+ PSS+AKVTL++ L+ V F ++WSSSPD LK+KSYFSLPE IEFPTEVPGQ AYAY+Y
Sbjct: 423 LHPSSIAKVTLNERSLEVVGFTIIWSSSPDILKFKSYFSLPEFIEFPTEVPGQNAYAYFY 482
Query: 478 PPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537
PPSNP YQASP EKPPLL+KSHGGPT+E RG LN SIQYWTSRGW +VDVNYGGSTGYGR
Sbjct: 483 PPSNPKYQASPNEKPPLLLKSHGGPTAETRGNLNPSIQYWTSRGWGYVDVNYGGSTGYGR 542
Query: 538 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKA 597
E+RERLL +WGIVDVNDCCSCA FLV SGK D ++LCITGGSAGGYTTLAALAFRDTFKA
Sbjct: 543 EYRERLLRQWGIVDVNDCCSCARFLVESGKVDGEQLCITGGSAGGYTTLAALAFRDTFKA 602
Query: 598 GASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK 657
GASLYG+ADL +LRA+THKFES YIDNLVG+EKDY+++SPINFVDKFSCPIILFQGLEDK
Sbjct: 603 GASLYGIADLRLLRADTHKFESHYIDNLVGNEKDYFDRSPINFVDKFSCPIILFQGLEDK 662
Query: 658 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVA 717
VV P+Q+RKIY ALKE GLPVALVEYEGEQHGFRKAENIKFTLEQQM+FFAR VG F VA
Sbjct: 663 VVLPNQSRKIYNALKEKGLPVALVEYEGEQHGFRKAENIKFTLEQQMMFFARTVGRFQVA 722
Query: 718 DEIIPIKIDNFD 729
D I P+KIDNFD
Sbjct: 723 DAINPLKIDNFD 734
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145358557|ref|NP_198470.3| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gi|332006674|gb|AED94057.1| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1084 bits (2803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/665 (77%), Positives = 579/665 (87%), Gaps = 8/665 (1%)
Query: 69 TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
TAPYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP E+GRGVLV + G+
Sbjct: 69 TAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPNESGRGVLVLQ----GETS 124
Query: 129 SDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG 187
DITPK++AVRT QEYGGGAF+I D T++FSNYKDQRLYK I KDSSP PITPDYG
Sbjct: 125 IDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYKQDITDKDSSPKPITPDYG 184
Query: 188 EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ---VLVSGSDFYA 244
P V+YADG+FD RFNRYVTVRED RQD N T IV + L+G+ ++ VLVSG+DFYA
Sbjct: 185 TPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLSGETLEEPKVLVSGNDFYA 244
Query: 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 304
FPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++ KRVCVAG DP VESPTEPK
Sbjct: 245 FPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNIDKRVCVAGCDPKYVESPTEPK 304
Query: 305 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGE 364
WSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF++PLW+FG NSYEII+ E
Sbjct: 305 WSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEFAKPLWIFGTNSYEIIECSEE 364
Query: 365 KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVA 424
KNLIACSYRQ G+SYLGI+DD S SLLDIP TD D+ITLGN CL+VEGAS V P SVA
Sbjct: 365 KNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSITLGNQCLYVEGASAVLPPSVA 424
Query: 425 KVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIY 484
+VTLD HK KA+ ++VWSSSPD LKYK+YFS+PELIEFPTEVPGQ AYAY+YPP+NP+Y
Sbjct: 425 RVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFPTEVPGQNAYAYFYPPTNPLY 484
Query: 485 QASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 544
AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAFVDVNYGGSTGYGRE+RERLL
Sbjct: 485 NASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVDVNYGGSTGYGREYRERLL 544
Query: 545 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGV 604
+WGIVDV+DCC CA +LV SGKAD KRLCI+GGSAGGYTTLA+LAFRD FKAGASLYGV
Sbjct: 545 RQWGIVDVDDCCGCAKYLVSSGKADVKRLCISGGSAGGYTTLASLAFRDVFKAGASLYGV 604
Query: 605 ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA 664
ADL ML+ E HKFESRYIDNLVG EKD+YE+SPINFVDKFSCPIILFQGLEDKVV PDQ+
Sbjct: 605 ADLKMLKEEGHKFESRYIDNLVGDEKDFYERSPINFVDKFSCPIILFQGLEDKVVTPDQS 664
Query: 665 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADEIIPIK 724
RKIY+ALK+ GLPVALVEYEGEQHGFRKAENIK+TLEQQMVFFARVVG F VAD+I P+K
Sbjct: 665 RKIYEALKKKGLPVALVEYEGEQHGFRKAENIKYTLEQQMVFFARVVGGFKVADDITPLK 724
Query: 725 IDNFD 729
IDNFD
Sbjct: 725 IDNFD 729
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9759033|dbj|BAB09360.1| acyl-peptide hydrolase-like [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1083 bits (2801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/685 (75%), Positives = 587/685 (85%), Gaps = 14/685 (2%)
Query: 51 MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
M+S+SP +A TAPYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP
Sbjct: 1 MSSSSPD----AAQTPLTTAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPN 56
Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYK 169
E+GRGVLV + G+ DITPK++AVRT QEYGGGAF+I D T++FSNYKDQRLYK
Sbjct: 57 ESGRGVLVLQ----GETSIDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYK 112
Query: 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229
I KDSSP PITPDYG P V+YADG+FD RFNRYVTVRED RQD N T IV + L+
Sbjct: 113 QDITDKDSSPKPITPDYGTPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLS 172
Query: 230 GQNIQ-----VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY 284
G+ ++ VLVSG+DFYAFPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++
Sbjct: 173 GETLEDPEPKVLVSGNDFYAFPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNID 232
Query: 285 KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF 344
KRVCVAG DP VESPTEPKWSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF
Sbjct: 233 KRVCVAGCDPKYVESPTEPKWSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEF 292
Query: 345 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNIT 404
++PLW+FG NSYEII+ EKNLIACSYRQ G+SYLGI+DD S SLLDIP TD D+IT
Sbjct: 293 AKPLWIFGTNSYEIIECSEEKNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSIT 352
Query: 405 LGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFP 464
LGN CL+VEGAS V P SVA+VTLD HK KA+ ++VWSSSPD LKYK+YFS+PELIEFP
Sbjct: 353 LGNQCLYVEGASAVLPPSVARVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFP 412
Query: 465 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAF 524
TEVPGQ AYAY+YPP+NP+Y AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAF
Sbjct: 413 TEVPGQNAYAYFYPPTNPLYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAF 472
Query: 525 VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 584
VDVNYGGSTGYGRE+RERLL +WGIVDV+DCC CA +LV SGKAD KRLCI+GGSAGGYT
Sbjct: 473 VDVNYGGSTGYGREYRERLLRQWGIVDVDDCCGCAKYLVSSGKADVKRLCISGGSAGGYT 532
Query: 585 TLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF 644
TLA+LAFRD FKAGASLYGVADL ML+ E HKFESRYIDNLVG EKD+YE+SPINFVDKF
Sbjct: 533 TLASLAFRDVFKAGASLYGVADLKMLKEEGHKFESRYIDNLVGDEKDFYERSPINFVDKF 592
Query: 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQM 704
SCPIILFQGLEDKVV PDQ+RKIY+ALK+ GLPVALVEYEGEQHGFRKAENIK+TLEQQM
Sbjct: 593 SCPIILFQGLEDKVVTPDQSRKIYEALKKKGLPVALVEYEGEQHGFRKAENIKYTLEQQM 652
Query: 705 VFFARVVGHFDVADEIIPIKIDNFD 729
VFFARVVG F VAD+I P+KIDNFD
Sbjct: 653 VFFARVVGGFKVADDITPLKIDNFD 677
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567356|ref|XP_003551887.1| PREDICTED: uncharacterized protein LOC100794040 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1072 bits (2771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/670 (74%), Positives = 579/670 (86%), Gaps = 3/670 (0%)
Query: 63 ATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPA 122
+T TAPYGSWKSP+T+D VSGA+K LGGT +DG GRLIWLE RPTE+GRGVLV EP
Sbjct: 4 STATVTTAPYGSWKSPITSDDVSGATKDLGGTTIDGRGRLIWLEFRPTESGRGVLVLEPE 63
Query: 123 KAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPI 182
G E DITPKE+ VRT AQEYGGGAF + GD V F+NY DQRLYK SI S D P+P+
Sbjct: 64 NNGGEAVDITPKEFGVRTLAQEYGGGAFTVSGDVVFFANYNDQRLYKQSISSLDVPPVPL 123
Query: 183 TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ---VLVSG 239
TPDYG PLVSYADG D RFNR+++VREDRR+ +LN T IV+IAL +++Q VLVSG
Sbjct: 124 TPDYGGPLVSYADGRLDARFNRFISVREDRRESSLNPPTTIVSIALGSKDLQEPEVLVSG 183
Query: 240 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299
SDFYAFPR+D + ER+ WI+W+HP+MPWDK ELWVGYISENG++YKRVC+AG DP+ VES
Sbjct: 184 SDFYAFPRLDSKSERITWIQWNHPSMPWDKTELWVGYISENGEIYKRVCIAGNDPSRVES 243
Query: 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEII 359
PTEPKWS GELFFVTD++NGFWN+HKWIE N+V+++YSL+AEF+RPLW +G+NSYE +
Sbjct: 244 PTEPKWSLDGELFFVTDKENGFWNIHKWIEFENKVVSVYSLEAEFTRPLWTYGMNSYEFV 303
Query: 360 QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVE 419
+S +KNLIACSYRQ+G+SYLGI+D G L+++D P TDI+NIT GNDCL+VEGAS V
Sbjct: 304 ESSKQKNLIACSYRQHGKSYLGIIDVQGSKLTVIDFPCTDINNITSGNDCLYVEGASEVL 363
Query: 420 PSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPP 479
PSSVAKVT DD K KAVDF ++WSSSPD+LKY SY S PE IEFPTEVPGQ AYAY+YPP
Sbjct: 364 PSSVAKVTFDDDKSKAVDFNIIWSSSPDSLKYSSYISKPEFIEFPTEVPGQNAYAYFYPP 423
Query: 480 SNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 539
SNP +QAS EEKPPLL+KSHGGPT E RGILNLS+QYWTSRGWA VDVNYGGSTGYGR +
Sbjct: 424 SNPDFQASKEEKPPLLLKSHGGPTQETRGILNLSVQYWTSRGWAVVDVNYGGSTGYGRVY 483
Query: 540 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGA 599
RERLL +WGIVDVNDCCSCAT+LV SGK D++RLCI GGSAGGYTTLA LAFRDTF+AGA
Sbjct: 484 RERLLRQWGIVDVNDCCSCATYLVDSGKVDKERLCIMGGSAGGYTTLAVLAFRDTFQAGA 543
Query: 600 SLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVV 659
SLYG+ADL++LRAETHKFES Y++NLVG +KD YE+SPIN VD FSCPII+FQGLEDKVV
Sbjct: 544 SLYGIADLNLLRAETHKFESHYVENLVGDDKDMYERSPINHVDNFSCPIIIFQGLEDKVV 603
Query: 660 PPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADE 719
PPDQARKIY+A+KE G+PVALVEYEGEQHGFRKAENIKFTLEQ+MVFFAR++GHFDVAD+
Sbjct: 604 PPDQARKIYQAVKEKGVPVALVEYEGEQHGFRKAENIKFTLEQEMVFFARLIGHFDVADD 663
Query: 720 IIPIKIDNFD 729
I PIKIDNFD
Sbjct: 664 ITPIKIDNFD 673
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 729 | ||||||
| TAIR|locus:2183587 | 730 | AT5G36210 [Arabidopsis thalian | 0.991 | 0.990 | 0.721 | 6.9e-292 | |
| TIGR_CMR|CBU_1529 | 636 | CBU_1529 "prolyl oligopeptidas | 0.559 | 0.641 | 0.458 | 5.5e-93 | |
| DICTYBASE|DDB_G0288631 | 700 | DDB_G0288631 "peptidase S9 fam | 0.691 | 0.72 | 0.343 | 1.4e-80 | |
| WB|WBGene00001057 | 643 | dpf-4 [Caenorhabditis elegans | 0.666 | 0.755 | 0.345 | 5.6e-68 | |
| TIGR_CMR|SO_1686 | 678 | SO_1686 "prolyl oligopeptidase | 0.566 | 0.609 | 0.351 | 1.2e-63 | |
| UNIPROTKB|Q88A85 | 610 | PSPTO_0508 "Uncharacterized pr | 0.445 | 0.532 | 0.391 | 2.8e-57 | |
| TIGR_CMR|SO_A0048 | 642 | SO_A0048 "periplasmic prolyl o | 0.308 | 0.350 | 0.337 | 1.6e-26 | |
| TIGR_CMR|SO_4618 | 645 | SO_4618 "prolyl oligopeptidase | 0.268 | 0.303 | 0.321 | 9.6e-23 | |
| TIGR_CMR|SO_4252 | 662 | SO_4252 "prolyl oligopeptidase | 0.305 | 0.336 | 0.319 | 6.4e-21 | |
| WB|WBGene00001059 | 740 | dpf-6 [Caenorhabditis elegans | 0.327 | 0.322 | 0.305 | 5.8e-20 |
| TAIR|locus:2183587 AT5G36210 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2803 (991.8 bits), Expect = 6.9e-292, P = 6.9e-292
Identities = 530/735 (72%), Positives = 607/735 (82%)
Query: 1 MAISLLSAITTLTRFXXXXXXXXINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVPET 60
MA+ LL+++ L F SR F++S +R + K + S + + +
Sbjct: 1 MALLLLTSLNHLVSFSLTRLPSSSAHNLFLSRS--FSSSIRRFNRFSLKPLRSFASMSSS 58
Query: 61 Y-SATQDKIT-APYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLV 118
A Q +T APYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP E+GRGVLV
Sbjct: 59 SPDAAQTPLTTAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPNESGRGVLV 118
Query: 119 KEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDS 177
+ G+ DITPK++AVRT QEYGGGAF+I D T++FSNYKDQRLYK I KDS
Sbjct: 119 LQ----GETSIDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYKQDITDKDS 174
Query: 178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ--- 234
SP PITPDYG P V+YADG+FD RFNRYVTVRED RQD N T IV + L+G+ ++
Sbjct: 175 SPKPITPDYGTPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLSGETLEEPK 234
Query: 235 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 294
VLVSG+DFYAFPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++ KRVCVAG DP
Sbjct: 235 VLVSGNDFYAFPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNIDKRVCVAGCDP 294
Query: 295 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGIN 354
VESPTEPKWSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF++PLW+FG N
Sbjct: 295 KYVESPTEPKWSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEFAKPLWIFGTN 354
Query: 355 SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEG 414
SYEII+ EKNLIACSYRQ G+SYLGI+DD S SLLDIP TD D+ITLGN CL+VEG
Sbjct: 355 SYEIIECSEEKNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSITLGNQCLYVEG 414
Query: 415 ASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYA 474
AS V P SVA+VTLD HK KA+ ++VWSSSPD LKYK+YFS+PELIEFPTEVPGQ AYA
Sbjct: 415 ASAVLPPSVARVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFPTEVPGQNAYA 474
Query: 475 YYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 534
Y+YPP+NP+Y AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAFVDVNYGGSTG
Sbjct: 475 YFYPPTNPLYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVDVNYGGSTG 534
Query: 535 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDT 594
YGRE+RERLL +WGIVDV+DCC CA +LV SGKAD KRLCI+GGSAGGYTTLA+LAFRD
Sbjct: 535 YGREYRERLLRQWGIVDVDDCCGCAKYLVSSGKADVKRLCISGGSAGGYTTLASLAFRDV 594
Query: 595 FKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGL 654
FKAGASLYGVADL ML+ E HKFESRYIDNLVG EKD+YE+SPINFVDKFSCPIILFQGL
Sbjct: 595 FKAGASLYGVADLKMLKEEGHKFESRYIDNLVGDEKDFYERSPINFVDKFSCPIILFQGL 654
Query: 655 EDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHF 714
EDKVV PDQ+RKIY+ALK+ GLPVALVEYEGEQHGFRKAENIK+TLEQQMVFFARVVG F
Sbjct: 655 EDKVVTPDQSRKIYEALKKKGLPVALVEYEGEQHGFRKAENIKYTLEQQMVFFARVVGGF 714
Query: 715 DVADEIIPIKIDNFD 729
VAD+I P+KIDNFD
Sbjct: 715 KVADDITPLKIDNFD 729
|
|
| TIGR_CMR|CBU_1529 CBU_1529 "prolyl oligopeptidase family protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 197/430 (45%), Positives = 272/430 (63%)
Query: 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYE 357
E ++P++S +G L+F++D K+GF NL+ + + +V ++ L+AE P WVF + +Y+
Sbjct: 224 EFVSQPQFSPEGTLYFLSD-KSGFGNLYCY--EDGKVKSMCPLNAECDSPPWVFKLKTYD 280
Query: 358 IIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD-IDNITLGNDCLFVEGAS 416
+ +KN +A G+ LG+++D G + D+PFT + + + D + GA+
Sbjct: 281 FL----DKNRLAVIVNHKGKQTLGVIED-GR-YTAFDLPFTSFVPTLAVQRDQVIFIGAA 334
Query: 417 GVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYY 476
P V D K K + +++ S P T+ K Y S PE IEFPT+ G+ AY +Y
Sbjct: 335 ---PDRFPAVVCYDSKNKRTE--ILYESVPLTID-KKYLSYPEAIEFPTD-EGKTAYGFY 387
Query: 477 YPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536
YPP N YQ EKPPL+V SHGGPTS LNL Q+WTS G+A +DVNYGGSTGYG
Sbjct: 388 YPPCNGDYQPPENEKPPLIVISHGGPTSSTSTALNLKNQFWTSCGFAVLDVNYGGSTGYG 447
Query: 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFK 596
+ +RERL GRWG+VDV DC + A +LV GKAD KRL I GGSAGG+T +AL F D F
Sbjct: 448 KAYRERLKGRWGVVDVADCVNGAKYLVKIGKADPKRLIIRGGSAGGFTVFSALIFYDVFA 507
Query: 597 AGASLYGVADLSMLRAETHKFESRYIDNLVGS---EKDYYE-KSPINFVDKFSCPIILFQ 652
AG+S +GVADL ++THKFES Y++ LVG +K Y+ +SPIN D+ SCPII Q
Sbjct: 508 AGSSYFGVADLESFASDTHKFESHYLETLVGKYPEQKSLYDARSPINHADRLSCPIIFLQ 567
Query: 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712
GLEDKVV P QA + +K+ GLP A V +E EQHGFR A+NIK LE ++ FF ++
Sbjct: 568 GLEDKVVLPAQAEVMIAKMKQKGLPYAYVVFEHEQHGFRNAKNIKTALESELYFFGKLF- 626
Query: 713 HFDVADEIIP 722
+F+ ++ P
Sbjct: 627 NFEPSESCRP 636
|
|
| DICTYBASE|DDB_G0288631 DDB_G0288631 "peptidase S9 family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 195/568 (34%), Positives = 290/568 (51%)
Query: 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRM---- 248
++ G + + + V ED + +V I L I+++ G DFYA+P +
Sbjct: 141 FSSGSVNKENEKVIMVCEDHTNEK-EVLHYLVEINLKTNEIEIIEKGHDFYAYPTLYNGK 199
Query: 249 DPRGER--------------MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 294
D +A+I W+ PNMPWD + + + + N ++ G++
Sbjct: 200 DKSSSSSSSSSSSSSSSSSLLAYIYWNFPNMPWDNSNVCIKDLKTN-EIIN--ISNGYE- 255
Query: 295 TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKW-IESN--NEVLAIYSLD-AEFSRPLW 349
ES P W+ + L+F++D NG+W +HK+ ++S ++V++ +D E P+W
Sbjct: 256 ---ESVLNPIWNEFDDCLYFISDL-NGYWTIHKYDLKSKKRSQVISSELIDFKEIGEPMW 311
Query: 350 VFGINSY------EIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI 403
FG + Y ++I + + L+ + N + I + F H S++ P
Sbjct: 312 YFGRSYYGFITPSKLIAALADYGLVIFNIETNQVEQI-IRNQFSHVKSIVASP------- 363
Query: 404 TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEF 463
+L LF+ G+S V S + K+ + K +FK + + S S P IEF
Sbjct: 364 SLST-ALFIGGSSTVMFSPI-KLNYNSDSKKC-EFKQLLNVKGGESITDSMISKPIEIEF 420
Query: 464 PTEVPG----QKAYAYYYPPS-NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 518
T +KA+AYYYPP+ + PPLLVKSHGGPT A +LN QYWT
Sbjct: 421 NTSSKSDNLIEKAFAYYYPPTFKKDSSTTTTPPPPLLVKSHGGPTDRAYSVLNYEYQYWT 480
Query: 519 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 578
SRG+A +DVNY GS+G+G+ +R+ L G WG+ D D + A +V G AD+ ++ I GG
Sbjct: 481 SRGFAILDVNYRGSSGFGKRYRKLLNGNWGLYDNADLVNAALHMVKMGLADKDKMFIDGG 540
Query: 579 SAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEK-D------ 631
SAGG+ TL +L F D FK G S YGVADL L ETHKFESRY D L+ K D
Sbjct: 541 SAGGFATLCSLTFYDIFKGGCSYYGVADLETLFKETHKFESRYQDTLITEMKLDGPNGEW 600
Query: 632 ---YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688
Y ++SPIN +D PI LF GLED VVP +Q+ +Y LK G+P L + GE H
Sbjct: 601 KRIYKDRSPINHLDLLKSPIALFHGLEDHVVPYNQSVLMYDHLKSKGIPSILELFPGEGH 660
Query: 689 GFRKAENIKFTLEQQMVFFARVVGHFDV 716
GF +NI LE + +FF +++ +
Sbjct: 661 GFLSKDNIIKCLEYEYIFFCKLLNQLPI 688
|
|
| WB|WBGene00001057 dpf-4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 177/513 (34%), Positives = 265/513 (51%)
Query: 208 VREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 267
V E + DA +++I +N V+ G+DFYA+PR+ P G+++ W++W PNMPW
Sbjct: 134 VNETHQADAKFPENRLISIDRATKNQNVIAHGADFYAYPRVSPDGKKLVWMQWSLPNMPW 193
Query: 268 DKAELWVGYISENGDVYKRVCVAGFDPTIVE-SPTEPKWSSKGELFFVTDRKNGFWNLHK 326
D+ + + + + G+ V + D T + + +EP W EL V D N +WN++K
Sbjct: 194 DETSIRMADL-KGGESSNEVTLK--DGTGKQINYSEPTWDGD-ELLTVNDSTN-WWNVYK 248
Query: 327 WIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385
N V + + E S PLW G +Y + + + N Y ++G + I
Sbjct: 249 SAAEPNSVEKNLNPIQREISYPLWQLGFRNYVLNKKYLVMNADGILYVRSGDVTVEIPTP 308
Query: 386 FGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSS 445
G+++ + +D G+D LF + SSV + L + K KV S
Sbjct: 309 -GYTV----FGYLSLDQN--GSD-LFAIASGPKRASSVISIDLAN---KNFPLKV-HRES 356
Query: 446 PDTLKYKSY-FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS 504
D+ + + S PE EF + G Y+YPP N Y A PP+L+ HGGPT+
Sbjct: 357 RDSSEIDALEISEPE--EFVFKSDGVDVSGYFYPPKNCSYSAPAGTLPPVLLLGHGGPTA 414
Query: 505 EARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG 564
A+ L+L Q++TSRG A DVNY GSTG+G EFR L G+ D +D + A LV
Sbjct: 415 PAQNNLDLKKQFFTSRGIAVFDVNYRGSTGFGTEFRRMLYKNCGVADRDDMLNGAKALVE 474
Query: 565 SGKADEKRLCITGGSAGGYTTLAALAF-RDTFKAGASLYGVADLSMLRAETHKFESRYID 623
GK D +++ ITG S+GGY L+ L ++ KA S+YGVADL L +THK E Y +
Sbjct: 475 QGKVDAEKVLITGSSSGGYLILSCLISPKNIIKAAVSVYGVADLLALDEDTHKLERCYNE 534
Query: 624 NLVGSEKD----YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 679
L+G + Y E+SPI +DK PI G ED VVP Q+ +Y+ ++ +G+ A
Sbjct: 535 MLIGKYPEQASIYEERSPIYHIDKIRTPIAFLHGREDTVVPMSQSITMYEKIRASGVTTA 594
Query: 680 LVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712
L+ ++GE HGFR + IK + E F + VG
Sbjct: 595 LMLFDGEGHGFRNGQVIKESTEATFYFLMKAVG 627
|
|
| TIGR_CMR|SO_1686 SO_1686 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 152/433 (35%), Positives = 235/433 (54%)
Query: 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 358
S +P + G+L+ V+D N +WN+++ + + + + S +AEF+ P W G ++Y
Sbjct: 256 SVAQPLFGPDGKLYVVSDISN-WWNIYR-VTPSYTLEPVLSKNAEFAVPDWRLGNHNYAF 313
Query: 359 IQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGV 418
LIA SY + R+ L + L I F +I + G D ++ GA
Sbjct: 314 ---ENATTLIA-SYVEGNRAALLRIHLDSELTESLAIDFAEITQVVKGEDGVYFVGAKAT 369
Query: 419 EPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYP 478
+ +V +L V++ + L +Y S I F T Q+AY Y+Y
Sbjct: 370 PEKGIYRVVGRGTEL-------VYAPALANLN-PNYVSRAINIAFATG-KDQQAYGYFYG 420
Query: 479 PSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538
P NP Y + +PPL+V HGGPTS A IQ+WTSRG+A +D+N+ GS+G+GR
Sbjct: 421 PVNPKYVPPHDTRPPLIVMLHGGPTSRASLAYRSEIQFWTSRGFAVLDLNFRGSSGFGRA 480
Query: 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 598
+R+ L G+WG DV D + A +LV G D +L I G SAGG T +++LAF + F+AG
Sbjct: 481 YRQSLYGKWGESDVEDAVNAAKYLVAKGWVDANKLAIRGISAGGLTVMSSLAFYNVFQAG 540
Query: 599 ASLYGVADLSMLRAETHKFESRYIDNLVGSEKD----YYEKSPINFVDKFSCPIILFQGL 654
S G++D+ L THKFES Y+D L+G + Y E SP+N +D + P+++FQ L
Sbjct: 541 VSYEGISDVEQLAKSTHKFESGYLDQLIGPYPENTDRYRELSPLNHLDGLNEPLLIFQSL 600
Query: 655 EDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHF 714
+K+VP Q+R+IY ALK G+P A ++Y + R E+ LE ++ F+ +V F
Sbjct: 601 RNKIVPTSQSRQIYDALKAKGVPTAYIDYGDDSDEGRTPEHKAAGLETELAFYGQVF-KF 659
Query: 715 DVADEIIPIKIDN 727
A ++ P+ +DN
Sbjct: 660 TPAGKLPPLILDN 672
|
|
| UNIPROTKB|Q88A85 PSPTO_0508 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 135/345 (39%), Positives = 195/345 (56%)
Query: 371 SYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDD 430
S+ Q+G LG+ G S + ++ ++ + + ++ AS V ++V ++ D
Sbjct: 278 SWSQDGSGVLGLCQADG-STEDFSVGYSRFRSLAVDEEFVYCIAASAVSTAAVLAISRAD 336
Query: 431 HKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEE 490
H + + SP + S P+ + +P+ G +AY Y+YP + +
Sbjct: 337 HSVHVL----AGGGSPLPAEL---ISRPQALCYPSG--GAEAYGYFYPAM------TGAQ 381
Query: 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 550
KPPL+V HGGPTS +L+ IQYWT RG+A D+NY GS+GYGR +R+ L WG+
Sbjct: 382 KPPLVVFIHGGPTSACYPVLDPRIQYWTHRGFAVADLNYRGSSGYGRAYRQGLHLTWGVA 441
Query: 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML 610
DV D C+ T L G DE++ I GGSAGGYTTL ALAF D F+AGASLYGV+D L
Sbjct: 442 DVQDACAVVTHLAERGLIDEQQAFIRGGSAGGYTTLCALAFEDVFRAGASLYGVSDPVAL 501
Query: 611 RAETHKFESRYIDNLVG---SEKDYYE-KSPINFVDKFSCPIILFQGLEDKVVPPDQARK 666
THKFE Y+D L+G ++ + YE ++P+ + S P+I FQG D VV P+Q R
Sbjct: 502 AKATHKFEGDYLDWLIGDPVTDIERYEARTPLLHANLISVPVIFFQGELDAVVVPEQTRA 561
Query: 667 IYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711
+ KAL++NG+ Y E HGFRKA N LE++ F+ V+
Sbjct: 562 MLKALQDNGIKAEGHFYPDEHHGFRKAHNQADALEKEWRFYRDVL 606
|
|
| TIGR_CMR|SO_A0048 SO_A0048 "periplasmic prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 79/234 (33%), Positives = 121/234 (51%)
Query: 488 PEEKP---PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 544
P++K P ++ HGGP + + +Q ++G+A V VN+ GSTGYG+ F E
Sbjct: 407 PKDKKTNLPTVILPHGGPHARDYWGFDPLVQMLANQGFAVVQVNFRGSTGYGKNFEEAGY 466
Query: 545 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL-AALAFRDTFKAGASLYG 603
G+WG +D + + G ADE R+CI G S GGY+ L +A + DTFK G
Sbjct: 467 GKWGTKIQDDIMLATQYAIQQGIADENRMCILGISFGGYSALQSATRYPDTFKCAIGYAG 526
Query: 604 VADLSMLRAETH----KFESRYIDNLVGSEKDYYE-KSPINFVDKFSCPIILFQGLEDKV 658
V DL ML E + Y+D +G++K + +SP++FVD +++ G EDK
Sbjct: 527 VYDLEMLYNEGDVKDTSWGDAYLDKTLGTDKAALKSQSPVHFVDMLKASVLIIHGEEDKR 586
Query: 659 VPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712
+ A + KAL + +P + + E HGF K ENI ++ + F R +G
Sbjct: 587 ASIEHANALMKALDKANIPYEKLIKDKEGHGFYKQENIGEANKKIVDFLNRKIG 640
|
|
| TIGR_CMR|SO_4618 SO_4618 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 9.6e-23, P = 9.6e-23
Identities = 64/199 (32%), Positives = 104/199 (52%)
Query: 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 552
P ++ HGGP S + Q++ +RG+A +N+ GS GYG EF + L WG+
Sbjct: 420 PTIIFPHGGPISYDSNDFDYWAQFFANRGYAVFRMNFRGSAGYGYEFMKAGLKSWGLEMQ 479
Query: 553 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 611
ND +L+ G +D +R+CI G S GGY L A D ++ S+ GV D++ L
Sbjct: 480 NDVEDGTRYLINQGISDPQRICIVGASYGGYAALMGAAMTPDLYRCAVSVAGVTDVANLV 539
Query: 612 AETHKFES-RYIDNLVGSEKDY-YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYK 669
+ +F + + +G + + YE+SPI+ DK + P++L G +D+VV +R+++
Sbjct: 540 RSSRRFTNYEVVKEQIGDDFNVLYERSPISKADKITIPVLLLHGDKDRVVKVQHSREMFD 599
Query: 670 ALKENGLPVALVEYEGEQH 688
LK V +E E H
Sbjct: 600 ELKSRKKNVEYIELENGGH 618
|
|
| TIGR_CMR|SO_4252 SO_4252 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 6.4e-21, Sum P(2) = 6.4e-21
Identities = 76/238 (31%), Positives = 112/238 (47%)
Query: 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS--EARGILNLSIQYWT 518
I F T GQK + Y P Y + PL+V HGGP + G + Q
Sbjct: 409 ISF-TNRDGQKIHGYLTLP----Y-GKEAKNLPLVVNPHGGPHGIRDWWGF-DPQNQLLA 461
Query: 519 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 578
G A + VN+ GS GYG F + +WG +D +++G G D++R+CI GG
Sbjct: 462 QNGMAVLQVNFRGSGGYGERFEQAGYQKWGSDIQHDIIDATQYVIGQGFVDKERICIAGG 521
Query: 579 SAGGYTTL-AALAFRDTFKAGASLYGVADLSMLRAETHKFESR----YIDNLVGSEKDYY 633
S GGY+ L +A+ D FK GV DL ++ E +R Y+ +++G +K
Sbjct: 522 SFGGYSALQSAVLAPDMFKCAVGFAGVYDLELMFDEGDVARTRSGTSYLKDVLGQDKATL 581
Query: 634 EK-SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690
+ SP V K ++L G ED+ P +Q + KALK + P + + E HGF
Sbjct: 582 KAMSPSENVAKLKANLLLVHGGEDERAPIEQLESLEKALKNHNYPYQKLVMDNEGHGF 639
|
|
| WB|WBGene00001059 dpf-6 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 81/265 (30%), Positives = 130/265 (49%)
Query: 447 DTLKYKSYFSLPELIEF--PTEVP-GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT 503
D + ++Y SLP ++VP G + YA + + A P++ ++V HGGP
Sbjct: 389 DEMTIQAYLSLPPQAPLLKSSQVPDGDRPYA-----NLGMIPAVPQK---MIVLVHGGP- 439
Query: 504 SEARGILNLS-IQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF 561
+AR S + W T+RG++ + VN+ GSTG+G+ G WG D F
Sbjct: 440 -KARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHFDILDAVEF 498
Query: 562 LVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADL-SMLRAETHKFES 619
V G A+ + + GGS GGY TL AL F TF G + G ++L S+++A +
Sbjct: 499 AVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQAIPPYWLG 558
Query: 620 RYID--NLVGSE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 670
D +VG++ + +SP+ F D+ + PI++ QG D V ++ + A
Sbjct: 559 FRKDLIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGANDPRVKQAESDQFVAA 618
Query: 671 LKENGLPVALVEYEGEQHGFRKAEN 695
L++ +PV + Y E HG RK +N
Sbjct: 619 LEKKHIPVTYLLYPDEGHGVRKPQN 643
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 729 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 4e-69 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 1e-48 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 9e-10 | |
| COG0657 | 312 | COG0657, Aes, Esterase/lipase [Lipid metabolism] | 1e-08 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 3e-07 | |
| pfam05448 | 319 | pfam05448, AXE1, Acetyl xylan esterase (AXE1) | 7e-07 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 2e-06 | |
| COG1073 | 299 | COG1073, COG1073, Hydrolases of the alpha/beta sup | 1e-05 | |
| PRK10566 | 249 | PRK10566, PRK10566, esterase; Provisional | 2e-05 | |
| pfam07859 | 207 | pfam07859, Abhydrolase_3, alpha/beta hydrolase fol | 3e-05 | |
| pfam01738 | 215 | pfam01738, DLH, Dienelactone hydrolase family | 1e-04 | |
| COG4099 | 387 | COG4099, COG4099, Predicted peptidase [General fun | 5e-04 | |
| COG3458 | 321 | COG3458, COG3458, Acetyl esterase (deacetylase) [S | 0.001 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 0.003 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 238 bits (608), Expect = 4e-69
Identities = 124/486 (25%), Positives = 192/486 (39%), Gaps = 33/486 (6%)
Query: 235 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 294
L G+ D G +A I PW I NG++
Sbjct: 162 KLGLGNLDVVSFATDGDGRLVASIRLDDDADPW--VTNLYVLIEGNGELESLT-PGEGSI 218
Query: 295 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFG-- 352
+ + + K + + + +I L + E L
Sbjct: 219 SKLAFDADGKS-----IALLGTESDRGLAEGDFI------LLLDGELGEVDGDLSSGDDT 267
Query: 353 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFV 412
++ + L+ + G S L +DD G + L + + L +
Sbjct: 268 RGAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLAL 327
Query: 413 EGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKA 472
+S EP + + + +SS ++ K + PE + + + G+
Sbjct: 328 AYSSPTEPPEIYLYDRGE--------EAKLTSSNNSGLKKVKLAEPEPVTYKSN-DGETI 378
Query: 473 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 532
+ + Y P P +K PL+V HGGP+++ N IQ S G+A + NY GS
Sbjct: 379 HGWLYKPPGF----DPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGS 434
Query: 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR 592
TGYGREF + + G WG VD+ D + LV D +R+ ITGGS GGY TL A
Sbjct: 435 TGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKT 494
Query: 593 DTFKAGASLY-GVADLSMLRAETHKFESRYIDNLVGSEKD---YYEKSPINFVDKFSCPI 648
FKA ++ GV L T +N G +D Y ++SPI + D P+
Sbjct: 495 PRFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKYEDRSPIFYADNIKTPL 554
Query: 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708
+L G ED VP +QA ++ ALK G PV LV + E HGF + EN L++ + +F
Sbjct: 555 LLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFK 614
Query: 709 RVVGHF 714
R +
Sbjct: 615 RHLKQR 620
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 1e-48
Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 5/204 (2%)
Query: 514 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 573
+Q RG+ N GS GYGR + + G G + +D + A +L+ G D RL
Sbjct: 7 LQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYVDPDRL 66
Query: 574 CITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLV-GSEKD 631
I GGS GGY T AAL R D FKA ++ V D ++T F RY++ ++
Sbjct: 67 AIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDNEE 126
Query: 632 YYEK-SPINFVD--KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688
Y SP + D K P++L GL D VPP +A K+ AL+ G V L+ + E H
Sbjct: 127 GYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEALKLVAALQAKGKNVLLLIFPDEGH 186
Query: 689 GFRKAENIKFTLEQQMVFFARVVG 712
G K N + +++ F +V+G
Sbjct: 187 GGGKPRNKREEYARELAFLLKVLG 210
|
Length = 212 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 9e-10
Identities = 46/221 (20%), Positives = 70/221 (31%), Gaps = 44/221 (19%)
Query: 482 PIYQASPEEK--PPLLVKSHG--GPTSEARGILNLSIQYWTSRGWAFVDVNY----GGST 533
P Y A P P ++ H G R + + G+ + + G T
Sbjct: 15 PAYLARPAGAGGFPGVIVLHEIFGLNPHIRDV----ARRLAKAGYVVLAPDLYGRQGDPT 70
Query: 534 GYGREFRERLLGRWGIVDVNDCCS----CATFLVGSGKADEKRLCITGGSAGGYTTLAAL 589
E E G VD + + +L + D KR+ + G GG L A
Sbjct: 71 DIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAA 130
Query: 590 AFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPII 649
KA + YG ++ +T K P++
Sbjct: 131 TRAPEVKAAVAFYG----GLIADDTA------------------------DAPKIKVPVL 162
Query: 650 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690
L ED +P + AL++ G+ V L Y G HGF
Sbjct: 163 LHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203
|
Length = 236 |
| >gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 55/259 (21%), Positives = 88/259 (33%), Gaps = 49/259 (18%)
Query: 464 PTEVPGQKAYAYYYPPSNPIYQASPEEKP----PLLVKSHGG-----PTSEARGILNLSI 514
P P A A P+ P+ K P+++ HGG ++
Sbjct: 47 PATSPEDVALAGPSGDGVPVRVYRPDRKAAATAPVVLYLHGGGWVLGSLRTHDALVA--- 103
Query: 515 QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGK---ADE 570
+ + G V V+Y RL + D + +L + D
Sbjct: 104 RLAAAAGAVVVSVDY------------RLAPEHPFPAALEDAYAAYRWLRANAAELGIDP 151
Query: 571 KRLCITGGSAGGY-TTLAALAFRDTF----KAGASLYGVADLSMLRAETHKFE------- 618
R+ + G SAGG+ ALA RD A + + DL+ A +
Sbjct: 152 SRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGYGEADLLDA 211
Query: 619 ----SRYIDNLVGSEKDYY--EKSPINFVDKFSC-PIILFQGLEDKVVPPDQARKIYKAL 671
+ + D +G+ D E SP+ D P ++ D + D+ + L
Sbjct: 212 AAILAWFADLYLGAAPDREDPEASPLASDDLSGLPPTLIQTAEFDPLR--DEGEAYAERL 269
Query: 672 KENGLPVALVEYEGEQHGF 690
+ G+PV L Y G HGF
Sbjct: 270 RAAGVPVELRVYPGMIHGF 288
|
Length = 312 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 63/220 (28%), Positives = 93/220 (42%), Gaps = 20/220 (9%)
Query: 483 IYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541
+ + + +++ P L+ ++GG S S + W RG FV N G +G E+ +
Sbjct: 412 VRKGAKKDENPTLLYAYGGFNISLTPRFSG-SRKLWLERGGVFVLANIRGGGEFGPEWHQ 470
Query: 542 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGAS 600
+ +D + A L+ G ++L I GGS GG AAL R + F GA+
Sbjct: 471 AGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELF--GAA 528
Query: 601 LYGVADLSMLRAETHKFE--SRYIDNLVGSEKDY------YEKSPINFVD---KFSCPII 649
+ V L MLR H S +I G+ D SP + + K+ P +
Sbjct: 529 VCEVPLLDMLR--YHLLTAGSSWIAEY-GNPDDPEDRAFLLAYSPYHNLKPGQKYP-PTL 584
Query: 650 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 689
+ L D V P ARK L+E G PV L E HG
Sbjct: 585 ITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHG 624
|
Length = 648 |
| >gnl|CDD|203252 pfam05448, AXE1, Acetyl xylan esterase (AXE1) | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 64/309 (20%), Positives = 105/309 (33%), Gaps = 62/309 (20%)
Query: 437 DFKVVWSSSPDTLKYKSYFSL-PELIEFPTEVPGQKAYAYYYPPSN--PIYQ-----ASP 488
DF W TL+ L PEL ++P + Y + I
Sbjct: 22 DFDEFWDR---TLEELRQVDLDPELEPADFQLPTVECYDLTFTGFGGARIKAWLVLPKHA 78
Query: 489 EEKPPLLVKSHG--GPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 546
E K P LV+ HG G + L+ W + G+A ++ G G +
Sbjct: 79 EGKHPALVEFHGYNGGRGDWHDNLH-----WAAAGYAVFAMDVRGQGGGSEDPGGVTGPT 133
Query: 547 W------GIVDVN----------DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590
+ G++D D ++ + DE+R+ + G S GG LAA A
Sbjct: 134 YKGHITRGLLDGPDHYYYRRVFLDAVRAVEIVMSLPEVDEERIGVYGASQGGALALAAAA 193
Query: 591 FRDTFKAGASLYG-------VADLSMLRA---ETHKFESRYIDNLVGSEKDYYEK----S 636
K + Y +L + E ++ ++ D E++ +
Sbjct: 194 LSPRIKKVVADYPFLSDFKRAVELDLAEEPYDEIFRY-FKFFDPHHEREEEVFRTLSYID 252
Query: 637 PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL---KENGLPVALVEYEGEQH----G 689
N + P+++ GL D+V PP Y L KE + Y H G
Sbjct: 253 IKNLAHRIKGPVLMSVGLMDQVCPPSTVFAAYNHLTTEKE------IKVYPEYGHEGGPG 306
Query: 690 FRKAENIKF 698
F++ + KF
Sbjct: 307 FQEDQQYKF 315
|
This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan. Length = 319 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 38/188 (20%), Positives = 57/188 (30%), Gaps = 51/188 (27%)
Query: 498 SHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS 557
HG + L + SRG+ V V+Y G +G
Sbjct: 5 LHGA-GGDPEAYAPL-ARALASRGYNVVAVDYPG---HGASLGAPDAEAV---------- 49
Query: 558 CATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKF 617
+ D +R+ + G S GG L A KA L
Sbjct: 50 -----LADAPLDPERIVLVGHSLGGGVALLLAARDPRVKAAVVLAAGDPPD--------- 95
Query: 618 ESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 677
++ + K + P+++ G D VVPP++A + AL P
Sbjct: 96 -------------------ALDDLAKLTVPVLIIHGTRDGVVPPEEAEALAAALPG---P 133
Query: 678 VALVEYEG 685
LV EG
Sbjct: 134 AELVVIEG 141
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|223999 COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 1e-05
Identities = 40/195 (20%), Positives = 61/195 (31%), Gaps = 16/195 (8%)
Query: 520 RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGS 579
+D +Y G R+L + + + A G + D R+ + G S
Sbjct: 115 LSEGVLDKDY---RLLGASLGPRILAGLSLGGPS---AGALLAWGPTRLDASRIVVWGES 168
Query: 580 AGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESR-YIDNLVGSEKDYYEKSPI 638
GG L L Y L +D L P
Sbjct: 169 LGGALALLLLGANPELARELIDY----LITPGGFAPLPAPEAPLDTLPLRAVLLLLLDPF 224
Query: 639 NFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIK 697
+ +K S P++L G D+VVP A +Y+A +E P L+ G H
Sbjct: 225 DDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPA 282
Query: 698 FT--LEQQMVFFARV 710
L++ F R
Sbjct: 283 VEQALDKLAEFLERH 297
|
Length = 299 |
| >gnl|CDD|182555 PRK10566, PRK10566, esterase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 569 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML-------RAETHKFESRY 621
+ RL + G S GG T L +A K ASL G + L +
Sbjct: 105 LDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLFPPLIPETAAQQAE 164
Query: 622 IDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL 676
+N+V ++ + +++ + P++L+ GL D VVP ++ ++ +AL+E GL
Sbjct: 165 FNNIVAPLAEW---EVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGL 217
|
Length = 249 |
| >gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 29/145 (20%)
Query: 568 ADEKRLCITGGSAGGYTTLA-ALAFRDT----FKAGASLYGVADLSMLRAETHKFESRYI 622
AD R+ + G SAGG A AL RD +Y DL +++ +
Sbjct: 68 ADPSRIAVAGDSAGGNLAAAVALRARDEGLPLPAGQVLIYPGLDLRTESESYNEYADGPL 127
Query: 623 DNLVGSEKDYYEK---SPINFVDKFSCPIIL--FQGLEDKVVPP------------DQAR 665
L + D++ + + D + P+ GL PP D+
Sbjct: 128 --LTRDDMDWFWRLYLPGADRDDPLASPLFAADLSGL-----PPALVVVAEFDPLRDEGE 180
Query: 666 KIYKALKENGLPVALVEYEGEQHGF 690
+ L+ G+ V LVEY G HGF
Sbjct: 181 AYAERLRAAGVEVELVEYPGMIHGF 205
|
This catalytic domain is found in a very wide range of enzymes. Length = 207 |
| >gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 29/130 (22%)
Query: 561 FLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESR 620
+L G D K++ + G GG LA R+ A S YG
Sbjct: 88 YLRGQPYVDTKKVGVVGFCLGGRLAFL-LAARNGVDAAVSFYGTGP-------------- 132
Query: 621 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 680
+ P++ PI+ G ED VP + + +AL+ + L
Sbjct: 133 --------------EPPLDEAPAIKAPILAHFGEEDPFVPAEARDLLEEALRAANVDHEL 178
Query: 681 VEYEGEQHGF 690
Y G H F
Sbjct: 179 HVYPGAGHAF 188
|
Length = 215 |
| >gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 41/149 (27%)
Query: 569 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 628
D R+ + G S GG+ T A F A A + G
Sbjct: 267 DRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVP-----------------------IAGG 303
Query: 629 EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ- 687
Y + PI +F +DKV+P +R +Y+ LK V +
Sbjct: 304 GDRVYLVRTLK-----KAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFLEGTT 358
Query: 688 --HG----------FRKAENIKFTLEQQM 704
G + AE I++ L+Q++
Sbjct: 359 VLEGVDHSGVWWATYNDAEAIEWLLKQRL 387
|
Length = 387 |
| >gnl|CDD|225989 COG3458, COG3458, Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 60/255 (23%), Positives = 85/255 (33%), Gaps = 52/255 (20%)
Query: 458 PELIEFPTEVPGQKAYAYYYPPSN--PIY-----QASPEEKPPLLVKSHG--GPTSEARG 508
P L +P + Y + I + K P +V+ HG G E
Sbjct: 42 PVLERSDFTLPRVEVYDVTFTGYGGARIKGWLVLPRHEKGKLPAVVQFHGYGGRGGEWHD 101
Query: 509 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW-------GIVD---------- 551
+L+ W G+A ++ G ++ + G GI+D
Sbjct: 102 MLH-----WAVAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGV 156
Query: 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML- 610
D L + DE+R+ +TGGS GG LAA A KA VAD L
Sbjct: 157 FLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKA-----VVADYPFLS 211
Query: 611 ---RAETHKFESRYIDNLVGSEKDYYEKSPI-----------NFVDKFSCPIILFQGLED 656
RA E Y D + K + K N + P+++ GL D
Sbjct: 212 DFPRAIELATEGPY-DEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMD 270
Query: 657 KVVPPDQARKIYKAL 671
V PP Y AL
Sbjct: 271 PVCPPSTQFAAYNAL 285
|
Length = 321 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 8/122 (6%)
Query: 567 KADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLV 626
+ + G S GG LAA A R AG L L L + + L
Sbjct: 61 ALGLGPVVLVGHSLGGAVALAAAARRPERVAGLVLISPP-LRDLEELLAADAAALLALLR 119
Query: 627 GSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 686
+ + + + P+++ G +D +VPP+ AR++ +AL LV G
Sbjct: 120 A---ALLDADLREALARLTVPVLVIHGEDDPLVPPEAARRLAEALP----GAELVVLPGA 172
Query: 687 QH 688
H
Sbjct: 173 GH 174
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 729 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 100.0 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 100.0 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.97 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.96 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.9 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.88 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.88 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK10566 | 249 | esterase; Provisional | 99.87 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.85 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.85 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.85 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.85 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.85 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.83 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.83 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.82 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.82 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.81 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.81 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.81 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.81 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.81 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.81 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.8 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.79 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.78 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.78 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.77 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.77 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.76 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.75 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.75 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.75 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.74 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.72 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.71 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.71 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.71 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.69 | |
| PLN02511 | 388 | hydrolase | 99.69 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.69 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.67 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.67 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.66 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.66 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.65 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.65 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.64 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.64 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.63 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.62 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.61 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.6 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.6 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.6 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.6 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.6 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.59 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.59 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.59 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.59 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.58 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.58 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.57 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.57 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.57 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.56 | |
| PLN00021 | 313 | chlorophyllase | 99.56 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.55 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.55 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.55 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.55 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.55 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.55 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.55 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.54 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.54 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.54 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.54 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.53 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.52 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.52 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.51 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.51 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.51 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.5 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.49 | |
| PLN02578 | 354 | hydrolase | 99.47 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.47 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.45 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.45 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.45 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.44 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.43 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.43 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.43 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.42 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.42 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.41 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.4 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.4 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.37 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.37 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.34 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.33 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.31 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.31 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.31 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.3 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.27 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.25 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.25 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.24 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 99.23 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.23 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.22 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 99.2 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 99.18 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 99.18 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.15 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 99.15 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.14 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.14 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.12 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 99.11 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.11 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.11 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 99.11 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 99.08 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.06 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.05 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 99.04 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 99.04 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 99.01 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.98 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 98.98 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.95 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.94 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.94 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.93 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.91 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.9 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.87 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.85 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.84 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.82 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.81 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.79 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.79 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.77 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.77 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.75 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.75 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.74 | |
| PRK10115 | 686 | protease 2; Provisional | 98.73 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.73 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.73 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.72 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.7 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.7 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.69 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.68 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.66 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.65 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.64 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.62 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.6 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 98.6 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.58 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.58 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.58 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.56 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.54 | |
| PTZ00420 | 568 | coronin; Provisional | 98.53 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.52 | |
| PTZ00421 | 493 | coronin; Provisional | 98.52 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 98.52 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.51 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.5 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.49 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.47 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.46 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.46 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.42 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 98.39 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.36 | |
| PTZ00421 | 493 | coronin; Provisional | 98.35 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 98.35 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.34 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.33 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 98.33 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.33 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.32 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 98.32 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 98.31 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.29 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.28 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.28 | |
| PTZ00420 | 568 | coronin; Provisional | 98.27 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.26 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 98.26 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 98.24 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 98.23 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.23 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 98.22 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.21 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.2 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.19 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 98.17 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 98.17 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.16 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.14 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.13 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 98.13 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.13 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 98.11 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.09 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 98.09 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.08 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 98.06 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 98.06 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.05 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 98.03 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.03 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 97.96 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.94 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.94 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.93 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 97.93 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 97.92 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.92 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.9 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.89 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 97.86 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.86 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.82 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.81 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.8 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 97.8 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.79 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.74 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.73 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.72 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.71 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.69 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.69 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.66 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.65 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 97.65 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.64 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.64 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 97.63 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.62 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.62 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.6 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 97.6 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 97.59 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 97.57 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.56 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.56 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.56 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 97.53 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 97.52 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.52 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 97.49 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.49 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.48 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.39 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.39 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.38 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.38 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.38 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 97.36 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.35 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.35 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 97.33 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.32 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 97.32 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.31 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.31 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.31 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.21 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.19 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.18 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 97.16 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 97.15 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.15 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.13 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 97.12 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.12 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 97.1 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.1 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.09 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.09 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.09 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.08 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.05 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 97.04 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.04 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.02 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 97.0 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.0 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.98 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.94 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.9 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 96.9 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 96.9 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.86 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.84 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.84 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 96.84 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.83 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 96.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.79 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 96.76 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.68 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.67 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 96.66 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.66 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.63 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.63 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 96.62 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 96.62 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 96.58 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 96.57 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 96.56 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 96.49 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 96.48 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.45 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.44 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 96.43 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.41 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.4 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.39 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 96.36 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.32 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 96.3 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.3 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.28 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 96.27 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.27 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 96.23 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 96.19 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 96.19 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.18 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 96.17 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 96.16 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 96.02 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.01 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 96.0 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.98 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 95.94 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 95.94 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.93 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 95.84 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 95.82 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 95.79 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 95.76 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 95.72 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 95.7 | |
| PLN02209 | 437 | serine carboxypeptidase | 95.68 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 95.65 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 95.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.6 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 95.57 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 95.56 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 95.55 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 95.53 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 95.48 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.43 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 95.41 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 95.39 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 95.39 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 95.32 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 95.3 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.28 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 95.21 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.14 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 95.13 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 94.99 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 94.98 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 94.98 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 94.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 94.9 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 94.89 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 94.86 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.86 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.86 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 94.85 | |
| KOG2521 | 350 | consensus Uncharacterized conserved protein [Funct | 94.74 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 94.7 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 94.68 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 94.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 94.61 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 94.49 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 94.48 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 94.47 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.46 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 94.45 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 94.38 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.3 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 94.29 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 94.28 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 94.28 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 94.25 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 94.16 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 94.12 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 94.08 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 94.08 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 93.98 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 93.96 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 93.93 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.9 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 93.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.8 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 93.8 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.78 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 93.77 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 93.69 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 93.65 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.64 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 93.56 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.46 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 93.41 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 93.34 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 93.33 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 93.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.25 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 93.21 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.09 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 93.0 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 92.91 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 92.89 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 92.83 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 92.77 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 92.77 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.64 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 92.5 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 92.45 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 92.34 | |
| PLN02193 | 470 | nitrile-specifier protein | 92.2 | |
| KOG2541 | 296 | consensus Palmitoyl protein thioesterase [Lipid tr | 92.19 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 92.15 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 92.08 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 91.78 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 91.52 | |
| COG2939 | 498 | Carboxypeptidase C (cathepsin A) [Amino acid trans | 91.4 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 91.34 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 91.22 | |
| PLN02633 | 314 | palmitoyl protein thioesterase family protein | 91.01 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 90.94 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 90.73 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 90.73 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 90.63 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 90.53 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 90.44 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 90.17 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 89.92 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.55 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 89.52 | |
| COG3946 | 456 | VirJ Type IV secretory pathway, VirJ component [In | 89.16 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 88.92 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 88.81 | |
| COG4287 | 507 | PqaA PhoPQ-activated pathogenicity-related protein | 88.73 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 88.65 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 88.63 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 88.59 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 88.57 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 88.26 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.18 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 88.03 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 87.82 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 87.72 | |
| PLN02153 | 341 | epithiospecifier protein | 87.57 | |
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 87.5 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.44 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 87.38 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 87.3 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 87.14 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 87.05 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-49 Score=441.81 Aligned_cols=581 Identities=25% Similarity=0.344 Sum_probs=416.5
Q ss_pred CCHHHHhccCCccCceEEcC-CCcEEEEeecCC---CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC
Q 004816 79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG 154 (729)
Q Consensus 79 lt~e~i~~~~~~~~~~~~~p-g~~~~~~~~~~~---~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (729)
++++++... ..++.+..+| ++.++++....+ ...+..+|..+.. ..+.++... .. ....|++++
T Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~-~~-------~~~~~spdg 71 (620)
T COG1506 4 FDAEDLLAL-ARVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGK---TVRLLTFGG-GV-------SELRWSPDG 71 (620)
T ss_pred CCHHHHHhh-hcccCcccCCCCceeEEeeccccccccccccceEEEecc---cccccccCC-cc-------cccccCCCC
Confidence 456666666 6778999999 999999976421 3344455654322 122222222 11 123355666
Q ss_pred CEEEEEECCC---CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccC----CC------------
Q 004816 155 DTVIFSNYKD---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR----QD------------ 215 (729)
Q Consensus 155 ~~i~~~~~~~---~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~----~~------------ 215 (729)
..++|..... .++|+++.. + .++.. .....+..|+|+|+.+++...... ..
T Consensus 72 ~~~~~~~~~~~~~~~l~l~~~~---g---~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (620)
T COG1506 72 SVLAFVSTDGGRVAQLYLVDVG---G---LITKT----AFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWF 141 (620)
T ss_pred CEEEEEeccCCCcceEEEEecC---C---ceeee----ecccccceeCCCCCeEEEEecccccccCCceeeeecccceee
Confidence 6777776222 378888865 2 12221 233477889999999988321110 00
Q ss_pred -CC-CcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC
Q 004816 216 -AL-NSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 293 (729)
Q Consensus 216 -~~-~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~ 293 (729)
.. ....++|++|.++ ....+..+......++|++|++.++.+.......+|. ...++.... ++.. ....++ .
T Consensus 142 ~~~g~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~--~~~~~~-~ 215 (620)
T COG1506 142 DGRGGERSDLYVVDIES-KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWV-TNLYVLIEG-NGEL--ESLTPG-E 215 (620)
T ss_pred cCCCCcccceEEEccCc-ccccccCCCCceeeeeeCCCCceeEEeeeccccCCce-EeeEEEecC-CCce--EEEcCC-C
Confidence 00 1356788888775 4445555556666788888889888777555423343 223333223 4443 223333 2
Q ss_pred CCccccccCceeCCCCc-EEEEEecCC-Cc---eEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEE
Q 004816 294 PTIVESPTEPKWSSKGE-LFFVTDRKN-GF---WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLI 368 (729)
Q Consensus 294 ~~~~~~~~~~~wspDG~-l~~~~~~~~-g~---~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l 368 (729)
.+...+.|.+||+ +++...... +. ..++.++.+.++.......... ....|.. ... . ++..+
T Consensus 216 ----~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~---~~~-~----~~~~~ 282 (620)
T COG1506 216 ----GSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDD-TRGAWAV---EGG-L----DGDGL 282 (620)
T ss_pred ----ceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCc-ccCcHHh---ccc-c----CCCcE
Confidence 4567889999999 777776522 21 2355555344443331111000 0111111 011 1 56667
Q ss_pred EEEEEE-CCeEEEEEEECCCCceEeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCC
Q 004816 369 ACSYRQ-NGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD 447 (729)
Q Consensus 369 ~~~s~~-~g~~~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~ 447 (729)
++...+ .|...++.++..++....+..+...+..+..+++.+++..+++..|.++|+++. ++..+++ ....
T Consensus 283 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~------~~~~ 354 (620)
T COG1506 283 LFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLT------SSNN 354 (620)
T ss_pred EEEEecCCCceEEEEEeccCCceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEe------eccc
Confidence 777766 777888888766666666666667777776688999999999999999999987 3333322 2233
Q ss_pred CccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEe
Q 004816 448 TLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV 527 (729)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~ 527 (729)
..+....+.+++.+++++. ||.++++|++.|.+.+ +.+++|+||++||||..+....|....|.|+++||+|+.+
T Consensus 355 ~~~~~~~~~~~e~~~~~~~-dG~~i~~~l~~P~~~~----~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~ 429 (620)
T COG1506 355 SGLKKVKLAEPEPVTYKSN-DGETIHGWLYKPPGFD----PRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAP 429 (620)
T ss_pred ccccccccCCceEEEEEcC-CCCEEEEEEecCCCCC----CCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEe
Confidence 4455677889999999998 9999999999998854 4566999999999999888888999999999999999999
Q ss_pred cCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccCh
Q 004816 528 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADL 607 (729)
Q Consensus 528 d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~ 607 (729)
|||||+|||++|.....++||..+.+|+.++++++.+.+.+|++||+|+|+|+||||+++++++.++|+++++..+++++
T Consensus 430 n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~f~a~~~~~~~~~~ 509 (620)
T COG1506 430 NYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAVAGGVDW 509 (620)
T ss_pred CCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCchhheEEeccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999966699999999998777
Q ss_pred hHHhhhcchhhhhhhhhhcC----ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE
Q 004816 608 SMLRAETHKFESRYIDNLVG----SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 683 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 683 (729)
..+......-.......... +.+.|...||+.+++++++|+|+|||++|.+||.+|+++|+++|+.+|+++++++|
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~ 589 (620)
T COG1506 510 LLYFGESTEGLRFDPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVF 589 (620)
T ss_pred hhhccccchhhcCCHHHhCCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEe
Confidence 65543322211111222222 46789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHHHhCC
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 713 (729)
|+++|++..+++....++.+++||+++++.
T Consensus 590 p~e~H~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 590 PDEGHGFSRPENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred CCCCcCCCCchhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999973
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=421.32 Aligned_cols=570 Identities=12% Similarity=0.075 Sum_probs=397.2
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCC-CCC--CCCcccCCCC-CcccccccccCCceEEEECCEEEEEECCCC--
Q 004816 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPA-KAG--DEPSDITPKE-YAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ-- 165 (729)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~-~~~--g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 165 (729)
+.|... |++.||.....+ .++.||+... .+. +..+.|++.. .......+..++..++++++.|+|..+..|
T Consensus 75 ~~p~~~-g~~~y~~~~~~g--~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E 151 (686)
T PRK10115 75 SAPYIK-NGYRYRHIYEPG--CEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRR 151 (686)
T ss_pred CCCEEE-CCEEEEEEEcCC--CccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcE
Confidence 345544 888888876443 3567775443 211 1234555422 111111222334445556668888877665
Q ss_pred --cEEEEeCCCCCCC--CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC--ceEEeeeC
Q 004816 166 --RLYKHSIDSKDSS--PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ--NIQVLVSG 239 (729)
Q Consensus 166 --~l~~~d~~~~~~~--~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g--~~~~lt~~ 239 (729)
+|++.++.+ |. ...+... . ..+.|++||+.|+|++.+... ....+||+.++.++ +.+.|..+
T Consensus 152 ~~~l~v~d~~t--g~~l~~~i~~~------~-~~~~w~~D~~~~~y~~~~~~~---~~~~~v~~h~lgt~~~~d~lv~~e 219 (686)
T PRK10115 152 QYGIRFRNLET--GNWYPELLDNV------E-PSFVWANDSWTFYYVRKHPVT---LLPYQVWRHTIGTPASQDELVYEE 219 (686)
T ss_pred EEEEEEEECCC--CCCCCccccCc------c-eEEEEeeCCCEEEEEEecCCC---CCCCEEEEEECCCChhHCeEEEee
Confidence 799999987 65 3444332 2 348899999999998874321 12378999999988 45556553
Q ss_pred CC--eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec-CCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEe
Q 004816 240 SD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 240 ~~--~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~ 316 (729)
.+ ......-+.||+++....... ..+++++++.+ .+++. ..+..... + .. ..+. ..++.+++.++
T Consensus 220 ~~~~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~~--~~~~~~~~-~--~~-~~~~-~~~~~ly~~tn 287 (686)
T PRK10115 220 KDDTFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAEP--FVFLPRRK-D--HE-YSLD-HYQHRFYLRSN 287 (686)
T ss_pred CCCCEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCCc--eEEEECCC-C--CE-EEEE-eCCCEEEEEEc
Confidence 22 222233455999987444332 23567777753 13432 22332222 1 11 1111 11233777777
Q ss_pred cCCCceEEEEEEcC-CCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeecc
Q 004816 317 RKNGFWNLHKWIES-NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 317 ~~~g~~~l~~~d~~-~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~ 395 (729)
.......|..+++. .++.+.|..+..+ +.. .++.+ .++.|++...++|...|+.++++++..+.|+.
T Consensus 288 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~-----~~i--~~~~~-----~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~ 355 (686)
T PRK10115 288 RHGKNFGLYRTRVRDEQQWEELIPPREN-----IML--EGFTL-----FTDWLVVEERQRGLTSLRQINRKTREVIGIAF 355 (686)
T ss_pred CCCCCceEEEecCCCcccCeEEECCCCC-----CEE--EEEEE-----ECCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence 64567789988887 4566666644211 111 12233 34589999999999999999988777777763
Q ss_pred C-CcceEE--ee--eeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCccCCCCCCCcEEEEeeccCCCe
Q 004816 396 P-FTDIDN--IT--LGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQ 470 (729)
Q Consensus 396 ~-~~~v~~--~~--~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~ 470 (729)
+ ...+.. .. .+++.+++..++...|.++|.+|+++++.+.|+ ......+++..+ .++++++++. ||.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~------~~~~~~~~~~~~-~~e~v~~~s~-DG~ 427 (686)
T PRK10115 356 DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK------QTEVPGFDAANY-RSEHLWITAR-DGV 427 (686)
T ss_pred CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE------ecCCCCcCcccc-EEEEEEEECC-CCC
Confidence 2 222222 22 445789999999999999999999988765554 222233555544 8899999998 999
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcc
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 550 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~ 550 (729)
+|++++..+++.. ..++.|+||++|||++....+.|....+.|+++||+|+.+|+|||+|+|+.|++.....++..
T Consensus 428 ~Ip~~l~~~~~~~----~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~ 503 (686)
T PRK10115 428 EVPVSLVYHRKHF----RKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKN 503 (686)
T ss_pred EEEEEEEEECCCC----CCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCC
Confidence 9999666544321 135669999999999999999999999999999999999999999999999999988888889
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh--cchhhhhhhhhhcC
Q 004816 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE--THKFESRYIDNLVG 627 (729)
Q Consensus 551 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~--~~~~~~~~~~~~~~ 627 (729)
+++|++++++||++++++|++|++|+|.|+||+++.+++. +|++|+|+|+..|++|+..+... ....... ...+|
T Consensus 504 ~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~--~~e~G 581 (686)
T PRK10115 504 TFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGE--FEEWG 581 (686)
T ss_pred cHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhH--HHHhC
Confidence 9999999999999999999999999999999999999998 89999999999999999876421 1111111 11223
Q ss_pred C------hhhhhhcCcccccCCCCCC-EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE---CCCCcccCC-cccH
Q 004816 628 S------EKDYYEKSPINFVDKFSCP-IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY---EGEQHGFRK-AENI 696 (729)
Q Consensus 628 ~------~~~~~~~sp~~~~~~i~~P-vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~---~~~gH~~~~-~~~~ 696 (729)
+ .+.+.++||+.++++++.| +|++||.+|.+||+.|+.+++++|++++++++++++ +++||+... ....
T Consensus 582 ~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~ 661 (686)
T PRK10115 582 NPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKS 661 (686)
T ss_pred CCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHH
Confidence 2 2345679999999999999 677899999999999999999999999998888888 999998432 2233
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 004816 697 KFTLEQQMVFFARVVGHF 714 (729)
Q Consensus 697 ~~~~~~~~~fl~~~l~~~ 714 (729)
.+.....+.|+...++.-
T Consensus 662 ~~~~A~~~aFl~~~~~~~ 679 (686)
T PRK10115 662 YEGVAMEYAFLIALAQGT 679 (686)
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 445556789999888733
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=344.34 Aligned_cols=546 Identities=19% Similarity=0.236 Sum_probs=386.9
Q ss_pred cccccccCCceEEEECC--EEEEEECCCCcEEEEeCCCCC--CCCeecCCCC--CCCceeeecceecC-CCCEEEEEEec
Q 004816 139 RTTAQEYGGGAFRIFGD--TVIFSNYKDQRLYKHSIDSKD--SSPLPITPDY--GEPLVSYADGIFDP-RFNRYVTVRED 211 (729)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~i~~~~~~~~~l~~~d~~~~~--~~~~~lt~~~--~~~~~~~~~~~~SP-dG~~l~~~~~~ 211 (729)
|.|....|+.+|.+... ..+|....+ ||--. +++. -...+++... -.......+|+++| |+.+|+|+.+
T Consensus 145 RkR~~~~GItsYe~hk~sg~~lF~~~s~--l~~c~-d~g~~~~t~~p~~p~~v~t~~t~~~~dP~lcP~~~~fia~i~~- 220 (867)
T KOG2281|consen 145 RKRLGVTGITSYEIHKGSGKFLFQANSG--LYHCS-DGGPQGFTVSPLTPLPVKTSPTSTRMDPKLCPADPDFIAYIKV- 220 (867)
T ss_pred HhhhceeeeeeEEEEcCCccEEEEecCC--ccccc-cCCCcccccCCCCCccccCCCCCCccCcccCCCCccceeeeeh-
Confidence 44555567888877633 566665422 33221 1100 1112222110 00112236888888 5999999976
Q ss_pred cCCCCCCcceEEEEEEcCCCceEEeeeC------------------------CCeeeeeeeCCCC----CeEEEEEecCC
Q 004816 212 RRQDALNSTTEIVAIALNGQNIQVLVSG------------------------SDFYAFPRMDPRG----ERMAWIEWHHP 263 (729)
Q Consensus 212 ~~~~~~~~~~~l~~~dl~~g~~~~lt~~------------------------~~~~~~~~~SPDG----~~la~~~~~~~ 263 (729)
+.||+.++.+++.++||.. .+.+.+.+|||-. .+|+|...|++
T Consensus 221 ---------~dl~V~n~~~~~ekrlt~~h~g~sn~~dd~~saGVasyv~QEEfdR~~GyWW~p~s~~~~~rIlYeeVdes 291 (867)
T KOG2281|consen 221 ---------CDLWVLNILTGEEKRLTYIHNGSSNSKDDAISAGVASYVVQEEFDRFEGYWWSPPSGLKILRILYEEVDES 291 (867)
T ss_pred ---------hhhhhhhhhhchhhceeeeeccccccccchhhcCcchHHHHHHHHhhcceeecCCCCCceEEEEeeecChh
Confidence 5699999999999888742 1356789999732 45777765544
Q ss_pred -------------------------CCCCCCcEEEEEEecC--CCCeeee---EEecCC--CCCccccccCceeCCCCc-
Q 004816 264 -------------------------NMPWDKAELWVGYISE--NGDVYKR---VCVAGF--DPTIVESPTEPKWSSKGE- 310 (729)
Q Consensus 264 -------------------------~~~~~~~~l~~~d~~~--~g~~~~~---~~~~~~--~~~~~~~~~~~~wspDG~- 310 (729)
|.++....|-++.+.. .|+...+ .+.... .-.|..++.++.|.|||+
T Consensus 292 ev~V~h~~s~~~~~~~~d~~rYPrtGt~Nak~~Lkmv~~~~~~~gk~~~v~~kdlv~~~~~~f~~~EYI~Ragwtpdgky 371 (867)
T KOG2281|consen 292 EVEVIHVPSPVLGDRRVDSYRYPRTGTKNAKSTLKMVEFENDAEGKIYDVPLKDLVQPFHCLFEDVEYIARAGWTPDGKY 371 (867)
T ss_pred heEEEeccCcccCCCccccccCCcCCCCCceeeEEEEEEeeccccceeccchhhcccccccccccceeeeeccccCCCcE
Confidence 1122233444444431 1222111 111110 112346788899999999
Q ss_pred EEEEE-ecCCCceEEEEEEcCCCeE---------------------EEeeccCccccCCcccccCcceeeeee--cCCCC
Q 004816 311 LFFVT-DRKNGFWNLHKWIESNNEV---------------------LAIYSLDAEFSRPLWVFGINSYEIIQS--HGEKN 366 (729)
Q Consensus 311 l~~~~-~~~~g~~~l~~~d~~~g~~---------------------~~l~~~~~~~~~~~w~~~~~~~~~l~~--~~~~~ 366 (729)
++.+. ++.+.+.+|..++++.... ..+..+. ...|....+-+.+++- +....
T Consensus 372 vwvq~LdR~Q~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~viyee~----sd~winiHd~f~~~~~~~~e~~~ 447 (867)
T KOG2281|consen 372 VWVQVLDRSQQRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVIYEEP----SDGWINIHDIFHPLPQSTHEASY 447 (867)
T ss_pred EEEEEecCCcceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceEEecC----CCceEEhhhcccccccCCcccee
Confidence 44333 3434455666777654332 1122222 3467665555665541 11334
Q ss_pred EEEEEEEECCeEEEEEEECCC----------------------CceEeeccCCcceEE---e-eeeCCEEEEEEeCCCCC
Q 004816 367 LIACSYRQNGRSYLGILDDFG----------------------HSLSLLDIPFTDIDN---I-TLGNDCLFVEGASGVEP 420 (729)
Q Consensus 367 ~l~~~s~~~g~~~ly~~d~~~----------------------g~~~~lt~~~~~v~~---~-~~~~~~~~~~~~~~~~~ 420 (729)
.++|++++.++.|||.+.... ++...||.+.|.|.. + +++-.+++|+.++.++|
T Consensus 448 ~fi~asE~~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSgeweVl~r~Gi~VdE~~~LVYf~gt~d~P 527 (867)
T KOG2281|consen 448 PFIWASEETGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGEWEVLARHGIWVDEVRKLVYFVGTKDTP 527 (867)
T ss_pred eEEEecccccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccceeehhhcCeeecccceEEEEEccCCCC
Confidence 589999999999999886433 234567788887644 3 56678899999999999
Q ss_pred ce--EEEEEcC-CCcceeeee---------------------------eEEecCC---CCC---------------ccCC
Q 004816 421 SS--VAKVTLD-DHKLKAVDF---------------------------KVVWSSS---PDT---------------LKYK 452 (729)
Q Consensus 421 ~~--ly~~d~~-~~~~~~lt~---------------------------~~~~~~~---~~~---------------~~~~ 452 (729)
.+ ||.+... .|+..+||+ ...+-.. ... ...+
T Consensus 528 lE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~~~~ 607 (867)
T KOG2281|consen 528 LEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGAPPP 607 (867)
T ss_pred ceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcCCCC
Confidence 88 8998888 788888886 1111100 000 0112
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cc----hhhhHHHhhCCcEEEEe
Q 004816 453 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL----NLSIQYWTSRGWAFVDV 527 (729)
Q Consensus 453 ~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~----~~~~~~la~~G~~v~~~ 527 (729)
.++..++.+.+++. .|..+.+.+|+|.+.. +++++|+|++++|||.-+... .| ....+.|+++||.|+.+
T Consensus 608 Pdy~p~eif~fqs~-tg~~lYgmiyKPhn~~----pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~I 682 (867)
T KOG2281|consen 608 PDYVPPEIFSFQSK-TGLTLYGMIYKPHNFQ----PGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFI 682 (867)
T ss_pred CccCChhheeeecC-CCcEEEEEEEccccCC----CCCCCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEE
Confidence 34555677888987 8999999999999855 588999999999999754332 22 24567899999999999
Q ss_pred cCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC-CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 528 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 528 d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
|-|||.-.|..|...+..++|..+++|...++++|.++. ++|.+||+|.|+|+|||++++++. +|+.|+++|+.+|++
T Consensus 683 DnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT 762 (867)
T KOG2281|consen 683 DNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVT 762 (867)
T ss_pred cCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcce
Confidence 999999999999999999999999999999999999984 899999999999999999999998 999999999999999
Q ss_pred ChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCC---CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 606 DLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS---CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
+|..|.. .+.++||+.+-.++..|.+-|-..++.++. ..+|++||--|..|...+.-.+..+|-++|++.++++
T Consensus 763 ~W~~YDT---gYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~lvkagKpyeL~I 839 (867)
T KOG2281|consen 763 DWRLYDT---GYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSALVKAGKPYELQI 839 (867)
T ss_pred eeeeecc---cchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEEEecccccchhhhhHHHHHHHHHhCCCceEEEE
Confidence 9987644 355777776655678888888888888775 3499999999999999999999999999999999999
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
||++.|+..+++.....-.+++.|+.+
T Consensus 840 fP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 840 FPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred ccccccccCCCccchhHHHHHHHHHhh
Confidence 999999999999888888899999875
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=320.58 Aligned_cols=523 Identities=22% Similarity=0.261 Sum_probs=338.2
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC-CCCcceEEEEEEcCCCceEEeeeCCC--
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-ALNSTTEIVAIALNGQNIQVLVSGSD-- 241 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~-~~~~~~~l~~~dl~~g~~~~lt~~~~-- 241 (729)
...+++++.+ +. ..+....+ .....-+.|||.|++++|+.+++-.. .......+.++.- +++-.......+
T Consensus 127 ~~~~~~~~~~--~~-~~~~~~~~--~~~~~~~~wsp~~~~l~yv~~~niy~~~~~~~~~~~~~~~-~~~~~i~ng~~Dw~ 200 (755)
T KOG2100|consen 127 AKYHLYDLNT--GE-KLHPPEYE--GSKIQYASWSPLGNDLAYVLHNNIYYQSSEEDEDVRIVSN-GGEDVIFNGKPDWI 200 (755)
T ss_pred EEEEEEEcCC--CC-cccCcccC--CCeeEEEEEcCCCCEEEEEEecccccccCcCCCceEEEec-CCCceEEcCCCCce
Confidence 3567777776 43 22222211 23345678999999999998754211 0000111112221 111111111111
Q ss_pred -------eeeeeeeCCCCCeEEEEEecCCCC---------------------------CCCCcEEEEEEecCCCCeeeeE
Q 004816 242 -------FYAFPRMDPRGERMAWIEWHHPNM---------------------------PWDKAELWVGYISENGDVYKRV 287 (729)
Q Consensus 242 -------~~~~~~~SPDG~~la~~~~~~~~~---------------------------~~~~~~l~~~d~~~~g~~~~~~ 287 (729)
.....+|||||.+++|...++... +.....|++.|.. +..... .
T Consensus 201 yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~~~yp~~~~~~ypk~g~~np~v~l~v~~~~-~~~~~~-~ 278 (755)
T KOG2100|consen 201 YEEEVLSSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDDDQYPKSTNFHYPKAGAPNPAVSLFVVDLH-DPPRLG-I 278 (755)
T ss_pred eehhhcccCccceeCCCCceeEEEEecccccceEEeccccccccCcccceeecCCCCCCCCeEEEEEEeCC-Cceeec-c
Confidence 223568999999999987554321 1122344555533 111100 0
Q ss_pred EecCCCCCccccccCceeCCCCcEEEEEe-cCCCceEEEEEEcCCCeEEEeeccCccccCC-cccccCc-ceeeeeecCC
Q 004816 288 CVAGFDPTIVESPTEPKWSSKGELFFVTD-RKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-LWVFGIN-SYEIIQSHGE 364 (729)
Q Consensus 288 ~~~~~~~~~~~~~~~~~wspDG~l~~~~~-~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~-~w~~~~~-~~~~l~~~~~ 364 (729)
......+.-..++....|..+.++.++.. +.+....+-..|.. +......... .. .|....+ .-.++. +
T Consensus 279 ~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~~~~~~~~cd~~-~~~~~~~~~~----~~~~W~~~~~~~~~~~~---d 350 (755)
T KOG2100|consen 279 PPPTNQRSGEYYVTNVKWDTTEKVLVVWTNREQNISVETLCDTP-GICRVVYEES----SDGGWVEHQNVEPVFSS---D 350 (755)
T ss_pred CCccccccCceEEEEEEEecCccEEEEEEccCCCeeeeEEecCc-ccceeeEecc----ccccccccccccceEee---c
Confidence 00000000003445567877766444433 31222223333333 2222221111 22 3665433 122222 3
Q ss_pred C-CEEEEEEEECC-eEEEEEEECCCC-ceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCc--eEEEEEcCCCcceeee
Q 004816 365 K-NLIACSYRQNG-RSYLGILDDFGH-SLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPS--SVAKVTLDDHKLKAVD 437 (729)
Q Consensus 365 ~-~~l~~~s~~~g-~~~ly~~d~~~g-~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~--~ly~~d~~~~~~~~lt 437 (729)
+ ..+++.+..++ ..|+..+...++ ..+.++.+.|.+..+ ...+...+++.+....+. .+|.+++.+...++||
T Consensus 351 ~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~~lt 430 (755)
T KOG2100|consen 351 GSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTVESLT 430 (755)
T ss_pred CCceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEcccccccccc
Confidence 3 44555666666 889988888777 778899999988766 224445555555554443 4888888765544444
Q ss_pred e----------eEEecC---------C--CCC--ccCC------------------------CCCCCcEEEEeeccCCCe
Q 004816 438 F----------KVVWSS---------S--PDT--LKYK------------------------SYFSLPELIEFPTEVPGQ 470 (729)
Q Consensus 438 ~----------~~~~~~---------~--~~~--~~~~------------------------~~~~~~~~~~~~~~~dG~ 470 (729)
- ...+.. . ..+ .+.. ..+...+...+.. +|.
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~--~~~ 508 (755)
T KOG2100|consen 431 CSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETNEELKKTIENVALPIVEFGKIEI--DGI 508 (755)
T ss_pred ccCCCCcceEEEEecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccChhhHHHhhcccCCcceeEEEEe--ccE
Confidence 2 011110 0 001 0000 0111122222222 688
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc---chhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~---~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
...+.+..|++.. +.+++|+||.+||||++..... .++....+..+|++|+.+|+||++++|.+++....+++
T Consensus 509 ~~~~~~~lP~~~~----~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~l 584 (755)
T KOG2100|consen 509 TANAILILPPNFD----PSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNL 584 (755)
T ss_pred EEEEEEecCCCCC----CCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhc
Confidence 8899999998854 4779999999999997544332 23444567788999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CC-CcceEEEEeccccChhHHhhhcchhhhhhhhhh
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNL 625 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~-~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 625 (729)
|..++.|...+++++++.+.+|.+||+|+|+|+|||+++.++. .+ +.|+|+++.+|++|+. +.... +..+|+...
T Consensus 585 G~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~--~terymg~p 661 (755)
T KOG2100|consen 585 GDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDST--YTERYMGLP 661 (755)
T ss_pred CCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eeccc--ccHhhcCCC
Confidence 9999999999999999999999999999999999999999998 54 8899999999999998 54433 335555544
Q ss_pred cCChhhhhhcCcccccCCCCCCE-EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHH
Q 004816 626 VGSEKDYYEKSPINFVDKFSCPI-ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQM 704 (729)
Q Consensus 626 ~~~~~~~~~~sp~~~~~~i~~Pv-L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 704 (729)
..+...|.+.++..++..++.|. |++||+.|..|+.+|+.+++++|+.+|+++.+++||++.|++.........+..+.
T Consensus 662 ~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~ 741 (755)
T KOG2100|consen 662 SENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLD 741 (755)
T ss_pred ccccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHH
Confidence 44455699999999999999886 99999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHhC
Q 004816 705 VFFARVVG 712 (729)
Q Consensus 705 ~fl~~~l~ 712 (729)
.||..++.
T Consensus 742 ~~~~~~~~ 749 (755)
T KOG2100|consen 742 RFLRDCFG 749 (755)
T ss_pred HHHHHHcC
Confidence 99998776
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=287.08 Aligned_cols=561 Identities=13% Similarity=0.087 Sum_probs=385.7
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCC-CcccCCCCCccc-ccccccCCceEEEECCEEEEEECCCC----cEEEEeC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDE-PSDITPKEYAVR-TTAQEYGGGAFRIFGDTVIFSNYKDQ----RLYKHSI 172 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~-~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~d~ 172 (729)
+...|+.+.. +++.+.++......++. .+.|++...-+. ...+..|+.+.+++.+.++++.+..| .|.+.|+
T Consensus 85 ~~~~Yy~r~~--~g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL 162 (682)
T COG1770 85 GPYEYYSRTE--EGKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDL 162 (682)
T ss_pred CCeeEEEEec--CCCcceeEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEec
Confidence 5566665543 46677776653332333 455554321111 12233345555555667888776554 6777888
Q ss_pred CCCCCC--CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC--CceEEeee--CCCeeeee
Q 004816 173 DSKDSS--PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQVLVS--GSDFYAFP 246 (729)
Q Consensus 173 ~~~~~~--~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~--g~~~~lt~--~~~~~~~~ 246 (729)
.+ ++ +..++. ....++|.+||+.++|++.+....| ..||.-.+.+ ..-+.|.. +..+..+.
T Consensus 163 ~t--g~~~~d~i~~-------~~~~~~Wa~d~~~lfYt~~d~~~rp----~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v 229 (682)
T COG1770 163 AT--GEELPDEITN-------TSGSFAWAADGKTLFYTRLDENHRP----DKVWRHRLGTPGSSDELVYEEKDDRFFLSV 229 (682)
T ss_pred cc--ccccchhhcc-------cccceEEecCCCeEEEEEEcCCCCc----ceEEEEecCCCCCcceEEEEcCCCcEEEEe
Confidence 87 43 223332 2367899999999999988765443 7899988887 55555654 34455556
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC--CCc-EEEEEecCCC-ce
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGE-LFFVTDRKNG-FW 322 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp--DG~-l~~~~~~~~g-~~ 322 (729)
.=|-+.++|+....++ ..+++++++.+ +.+..+..+.+... ....+. -|. +++.++. .| .+
T Consensus 230 ~~s~s~~yi~i~~~~~-----~tsE~~ll~a~-~p~~~p~vv~pr~~--------g~eY~~eh~~d~f~i~sN~-~gknf 294 (682)
T COG1770 230 GRSRSEAYIVISLGSH-----ITSEVRLLDAD-DPEAEPKVVLPREN--------GVEYSVEHGGDRFYILSNA-DGKNF 294 (682)
T ss_pred eeccCCceEEEEcCCC-----cceeEEEEecC-CCCCceEEEEEcCC--------CcEEeeeecCcEEEEEecC-CCcce
Confidence 6677778776544333 45789999998 55544444544442 122222 255 6666766 45 67
Q ss_pred EEEEEEc--CCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcce
Q 004816 323 NLHKWIE--SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI 400 (729)
Q Consensus 323 ~l~~~d~--~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v 400 (729)
.|++... ....++.+++......-. ++.. -.++|++.....|...|++.+.++++...|.-+....
T Consensus 295 ~l~~ap~~~~~~~w~~~I~h~~~~~l~-------~~~~-----f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay 362 (682)
T COG1770 295 KLVRAPVSADKSNWRELIPHREDVRLE-------GVDL-----FADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAY 362 (682)
T ss_pred EEEEccCCCChhcCeeeeccCCCceee-------eeee-----eccEEEEEecccCCceEEEEecCCCceeeEEecchhh
Confidence 7876554 223345554333211111 1111 3467888888889999999999888887776553321
Q ss_pred E-Ee----eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCccCCCCCCCcEEEEeeccCCCeEEEEE
Q 004816 401 D-NI----TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAY 475 (729)
Q Consensus 401 ~-~~----~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~l~~~ 475 (729)
. .+ -.+...+.+..++.++|.++|-+|+.+++.+.|.+..+.. .+++... ..+.+..... ||..|+..
T Consensus 363 ~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~-----g~dp~~Y-~s~riwa~a~-dgv~VPVS 435 (682)
T COG1770 363 SAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPG-----GFDPEDY-VSRRIWATAD-DGVQVPVS 435 (682)
T ss_pred hccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCC-----CCChhHe-EEEEEEEEcC-CCcEeeEE
Confidence 1 11 3556789999999999999999999999987666544432 2444333 3467777776 99999999
Q ss_pred EEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHH
Q 004816 476 YYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC 555 (729)
Q Consensus 476 l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~ 555 (729)
+..-++.. ...+.|++|+.+|..+......|+...-.|.++||+....+.||++.-|+.|.+........+...|+
T Consensus 436 Lvyrkd~~----~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DF 511 (682)
T COG1770 436 LVYRKDTK----LDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDF 511 (682)
T ss_pred EEEecccC----CCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHH
Confidence 88776522 25677999999999889888999987788999999999999999999999999988776677889999
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCCh-----
Q 004816 556 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSE----- 629 (729)
Q Consensus 556 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----- 629 (729)
++++++|+++++.++++|+++|.|+||+++..++. .|++|+++|+..|+.|...-...........-...||++
T Consensus 512 Ia~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~ 591 (682)
T COG1770 512 IAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEY 591 (682)
T ss_pred HHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHH
Confidence 99999999999999999999999999999998888 999999999999999975433222211111112233432
Q ss_pred -hhhhhcCcccccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCC---CEEEEEECCCCcc-cCCcccHHHHHHHH
Q 004816 630 -KDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL---PVALVEYEGEQHG-FRKAENIKFTLEQQ 703 (729)
Q Consensus 630 -~~~~~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~gH~-~~~~~~~~~~~~~~ 703 (729)
+.+..+||+.++..-. +|+|++.|.+|++|.+.+..++.++|++.+. ++-+..-.++||+ .+..-...+-....
T Consensus 592 y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee~A~e 671 (682)
T COG1770 592 YDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFE 671 (682)
T ss_pred HHHHhhcCchhccccCCCCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCCCCchHHHHHHHHH
Confidence 3446789999887754 5799999999999999999999999999753 5667776799996 33323333344445
Q ss_pred HHHHHHHhC
Q 004816 704 MVFFARVVG 712 (729)
Q Consensus 704 ~~fl~~~l~ 712 (729)
..|+.+.++
T Consensus 672 YaF~l~~~~ 680 (682)
T COG1770 672 YAFLLKLAG 680 (682)
T ss_pred HHHHhhhcc
Confidence 667766554
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=268.04 Aligned_cols=205 Identities=35% Similarity=0.578 Sum_probs=178.7
Q ss_pred cchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHH
Q 004816 509 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA 588 (729)
Q Consensus 509 ~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~ 588 (729)
.|+...++|+++||+|+.+||||++|+|..|.....++++..+++|+.+++++|++++.+|++||+|+|+|+||++++.+
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCcceEEEEeccccChhHHhhhcchhhh-hhhhhh--cCChhhhhhcCcccccCC--CCCCEEEEEeCCCCCCChH
Q 004816 589 LA-FRDTFKAGASLYGVADLSMLRAETHKFES-RYIDNL--VGSEKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPPD 662 (729)
Q Consensus 589 ~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~sp~~~~~~--i~~PvL~i~G~~D~~vp~~ 662 (729)
+. +|++|+++|+.+|+.|+..+......+.. .+.... ....+.|...+|+..+.+ +++|+|++||++|.+||++
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~ 161 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVPPS 161 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSSTTH
T ss_pred hcccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccCHH
Confidence 99 99999999999999998776654332222 222211 125677888999999998 8899999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCC
Q 004816 663 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 663 ~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 713 (729)
++.+++++|+++|+++++++||+++|++..+++..+..+.+++||+++|+.
T Consensus 162 ~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 162 QSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998899999999999999999983
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=247.87 Aligned_cols=321 Identities=21% Similarity=0.249 Sum_probs=255.2
Q ss_pred eEEEEEEECCCCceEeeccCCcc-eE--EeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCccCCC
Q 004816 377 RSYLGILDDFGHSLSLLDIPFTD-ID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKS 453 (729)
Q Consensus 377 ~~~ly~~d~~~g~~~~lt~~~~~-v~--~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~~~~~ 453 (729)
...|-+.+..+-..+.|..+... +. ....++..+++..++-.+|..+|+.++.+++++.+. .....+++.
T Consensus 318 ~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik-------~~p~~FDa~ 390 (648)
T COG1505 318 SGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIR-------EQPVQFDAD 390 (648)
T ss_pred cceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCceehhhh-------hccCCcCcc
Confidence 33566666666555666654332 22 335667888999999999999999999999875543 224455655
Q ss_pred CCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCC
Q 004816 454 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 454 ~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~ 533 (729)
++ .+++....+. ||.+|++++.. ++.. .+ +.|++|+-+||..-...+.|......|.++|...+..|.||+|
T Consensus 391 ~~-~veQ~~atSk-DGT~IPYFiv~-K~~~----~d-~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGG 462 (648)
T COG1505 391 NY-EVEQFFATSK-DGTRIPYFIVR-KGAK----KD-ENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGG 462 (648)
T ss_pred Cc-eEEEEEEEcC-CCccccEEEEe-cCCc----CC-CCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCC
Confidence 55 4677777787 99999999997 5533 13 6799999999988888899998789999999999999999999
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA 612 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~ 612 (729)
.||.+|+++..+......++|+.++++.|+++++..+++++|.|.|-||.++..+++ +|+.|.|+|+..|+.|+..|..
T Consensus 463 EfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~ 542 (648)
T COG1505 463 EFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHL 542 (648)
T ss_pred ccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcc
Confidence 999999999887777788999999999999999999999999999999999988888 9999999999999999988754
Q ss_pred hcc--hhhhhhhhhhc-CChhhhhhcCcccccCCC-C-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCC
Q 004816 613 ETH--KFESRYIDNLV-GSEKDYYEKSPINFVDKF-S-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687 (729)
Q Consensus 613 ~~~--~~~~~~~~~~~-~~~~~~~~~sp~~~~~~i-~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~g 687 (729)
-.. .+...|.+.-. .+.....++||+++++.- + +|+||..+..|.+|.|.|+++|+.+|++.+.++-+.+--++|
T Consensus 543 l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gG 622 (648)
T COG1505 543 LTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGG 622 (648)
T ss_pred cccchhhHhhcCCCCCHHHHHHHHhcCchhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCc
Confidence 321 11122211100 122456789999998873 3 689999999999999999999999999999999999999999
Q ss_pred cccCCcccH-HHHHHHHHHHHHHHhC
Q 004816 688 HGFRKAENI-KFTLEQQMVFFARVVG 712 (729)
Q Consensus 688 H~~~~~~~~-~~~~~~~~~fl~~~l~ 712 (729)
|+-..+... .+....++.||.+.|+
T Consensus 623 H~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 623 HGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 986554333 5566778899988774
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-25 Score=233.11 Aligned_cols=491 Identities=17% Similarity=0.146 Sum_probs=312.3
Q ss_pred ceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEE
Q 004816 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWV 274 (729)
Q Consensus 196 ~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~ 274 (729)
...|||-++|+|.....+.+ ...+ +.++...++.- +.........+|.- ||+.|.|...++.+ ...+||.
T Consensus 143 s~~spD~~~ia~~~~~~~~e----~~~~-v~~~~~~~~~~-~~~~~g~~y~~w~~~dg~~l~~~t~~~~~---r~hkvy~ 213 (712)
T KOG2237|consen 143 SESSPDHKYIAYTKDTEGKE----LFTV-VIDVKFSGPVW-THDGKGVSYLAWAKQDGEDLLYGTEDENN---RPHKVYY 213 (712)
T ss_pred cccCCCceEEEEEEcCCCCc----ccee-eeeeccCCcee-eccCCceEeeeecccCCceeeeeeecccc---CcceEEE
Confidence 34789999999987765433 2344 66666554322 22334455677877 99988888877655 3456999
Q ss_pred EEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCC---ceEEEEEEcCC---CeEEEeec---------
Q 004816 275 GYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG---FWNLHKWIESN---NEVLAIYS--------- 339 (729)
Q Consensus 275 ~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g---~~~l~~~d~~~---g~~~~l~~--------- 339 (729)
..+. +.+-..+.+....+.. .......-+.+|.+.+.+.. .+ ...+|..|... |....+.+
T Consensus 214 h~~G-tdq~~Dvl~~~e~d~~--~~vf~~~~kD~~~~~i~si~-~t~s~~~~vf~~d~~~~~~gl~~~~~~~v~~v~~f~ 289 (712)
T KOG2237|consen 214 HTLG-TDQSEDVLLYEEKDEP--KHVFISETKDSGFYTINSIS-ETCSPVNKVFLCDLSSPSDGLELLILPRVKGVDCFV 289 (712)
T ss_pred Eecc-cCCCcceEEEecCCCC--eEEEEEEEecCceEEEEEee-ccCCccceEEEEecccccCCcchheeeccchhhhhh
Confidence 8887 3333445555555411 11111122333444333333 22 33666666532 21100110
Q ss_pred cCcc--------------ccCCcccccCccee----------eeeec---------CCCCEEEEEEEECCeEEEE--EEE
Q 004816 340 LDAE--------------FSRPLWVFGINSYE----------IIQSH---------GEKNLIACSYRQNGRSYLG--ILD 384 (729)
Q Consensus 340 ~~~~--------------~~~~~w~~~~~~~~----------~l~~~---------~~~~~l~~~s~~~g~~~ly--~~d 384 (729)
+..+ ...|.......++. |...+ -++..+++....+-. ++- +.-
T Consensus 290 eh~~fi~~~~t~~~~~tn~~~p~y~l~r~~~~~~~~~~W~~v~~e~~~~vl~~~~~~~~~~ll~~~~~~l~-~i~q~~~~ 368 (712)
T KOG2237|consen 290 EHYDFITNEGTEFYFLTNKDAPNYYLLRIDVKEPEESKWETVFAEHEKDVLEDVDMVNDNLLLVCYMSDLK-HILQVRDL 368 (712)
T ss_pred hhhhheeccCcceeeeccCCCCceeEEeeeccCccccccceeecccchhhhhhhhhhcCceEEEEEecCch-hhcccccc
Confidence 0000 00010000000000 00000 011111111111110 111 011
Q ss_pred CCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCC--CccCCCCCCCcEE
Q 004816 385 DFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD--TLKYKSYFSLPEL 460 (729)
Q Consensus 385 ~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~--~~~~~~~~~~~~~ 460 (729)
+++...+.+..+-+.+... ..+...+.|..++.-+|+.+|.+|++.++++ ..++..... +.++.+.. ..++
T Consensus 369 l~g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e----~~vf~e~~~~lpg~~~s~y-~~~r 443 (712)
T KOG2237|consen 369 LDGSLLRSFPLPVGSVSGTSGDFKSSTIRFQFSSFLTPGSIYDYDLANGKPE----PSVFREITVVLPGFDASDY-VVER 443 (712)
T ss_pred ccCceeeeecCCCCcccccccCCCCceEEEEEeccCCCCeEEEeeccCCCCC----CcceeeeccccCcccccce-EEEE
Confidence 2333444444444444444 3445678888999999999999999998652 223333221 34444433 5788
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~ 540 (729)
+++++. ||..++..+..-+... ...+.|++|+.||+.+-...+.|......|..+|+..+..|.||+|++|.+|+
T Consensus 444 ~~~~Sk-DGt~VPM~Iv~kk~~k----~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WH 518 (712)
T KOG2237|consen 444 IEVSSK-DGTKVPMFIVYKKDIK----LDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWH 518 (712)
T ss_pred EEEecC-CCCccceEEEEechhh----hcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchh
Confidence 999998 9999999988754422 24578999999999888888888887777888999999999999999999999
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc--chh
Q 004816 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET--HKF 617 (729)
Q Consensus 541 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~--~~~ 617 (729)
+........+..+|++++++||++++++.++|+++.|.|.||.++..++. +|++|+|+|+..|+.|+......+ +..
T Consensus 519 k~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt 598 (712)
T KOG2237|consen 519 KDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLT 598 (712)
T ss_pred hccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccc
Confidence 99887777788999999999999999999999999999999999988888 999999999999999987654322 222
Q ss_pred hhhhhhhhcCC---hhhhhhcCcccccCCCC-----CCEEEEEeCCCCCCChHHHHHHHHHHHhC-------CCCEEEEE
Q 004816 618 ESRYIDNLVGS---EKDYYEKSPINFVDKFS-----CPIILFQGLEDKVVPPDQARKIYKALKEN-------GLPVALVE 682 (729)
Q Consensus 618 ~~~~~~~~~~~---~~~~~~~sp~~~~~~i~-----~PvL~i~G~~D~~vp~~~~~~~~~~l~~~-------g~~~~~~~ 682 (729)
...| ..+++ .+.+...+|+...++++ +.+|+..+.+|.+|++.++.++.++|+.+ ..++-+.+
T Consensus 599 ~sd~--ee~g~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i 676 (712)
T KOG2237|consen 599 TSDY--EEWGNPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRI 676 (712)
T ss_pred hhhh--cccCChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEE
Confidence 2222 12233 34455566666666654 34899999999999999999999999875 13678999
Q ss_pred ECCCCcccCCccc-HHHHHHHHHHHHHHHhC
Q 004816 683 YEGEQHGFRKAEN-IKFTLEQQMVFFARVVG 712 (729)
Q Consensus 683 ~~~~gH~~~~~~~-~~~~~~~~~~fl~~~l~ 712 (729)
..++||+...+.. ..+-.....+|+.+.+.
T Consensus 677 ~~~agH~~~~~~~k~~~E~a~~yaFl~K~~~ 707 (712)
T KOG2237|consen 677 ETKAGHGAEKPRFKQIEEAAFRYAFLAKMLN 707 (712)
T ss_pred ecCCccccCCchHHHHHHHHHHHHHHHHHhc
Confidence 9999998654322 23444567788888776
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=221.94 Aligned_cols=248 Identities=16% Similarity=0.158 Sum_probs=182.2
Q ss_pred CCEEEEEECC--------CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCE--EEEEEeccCCCCCCcceEE
Q 004816 154 GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR--YVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 154 ~~~i~~~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~--l~~~~~~~~~~~~~~~~~l 223 (729)
+.+|+|+... ..+||++|.++ +.+++||... .....|+|||||++ ++|++...+ ..+|
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG--~~~~~lt~~~----~~~~sP~wSPDG~~~~~~y~S~~~g------~~~I 213 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDG--QNLRPLTQEH----SLSITPTWMHIGSGFPYLYVSYKLG------VPKI 213 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCC--CCceEcccCC----CCcccceEccCCCceEEEEEEccCC------CceE
Confidence 6788888653 23899999998 8899999862 33478999999987 455765442 3689
Q ss_pred EEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEE--EecCCCCe-eeeEEecCCCCCccccc
Q 004816 224 VAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG--YISENGDV-YKRVCVAGFDPTIVESP 300 (729)
Q Consensus 224 ~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~--d~~~~g~~-~~~~~~~~~~~~~~~~~ 300 (729)
|++++++|+.++|+...+....|+|||||++|+|+.. ..+ ..++|+. +++ ++.. ....++.+.. ...
T Consensus 214 ~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~-~~g----~~di~~~~~~~~-~g~~g~~~~lt~~~~----~~~ 283 (428)
T PRK01029 214 FLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISD-RYG----NPDLFIQSFSLE-TGAIGKPRRLLNEAF----GTQ 283 (428)
T ss_pred EEEECCCCCceEeecCCCCccceEECCCCCEEEEEEC-CCC----CcceeEEEeecc-cCCCCcceEeecCCC----CCc
Confidence 9999999999999876666677999999999999983 222 3457775 554 3211 1233443322 233
Q ss_pred cCceeCCCCc-EEEEEecCCCceEEEEEEcC--CCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 301 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIES--NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 301 ~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~--~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
..|.|||||+ |+|.++. .|..+||+++++ +++.+.|+........+.|++ |++.|++.....|.
T Consensus 284 ~~p~wSPDG~~Laf~s~~-~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP------------DG~~Laf~~~~~g~ 350 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNK-DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP------------DGKKIAFCSVIKGV 350 (428)
T ss_pred CCeEECCCCCEEEEEECC-CCCceEEEEECcccccceEEeccCCCCccceeECC------------CCCEEEEEEcCCCC
Confidence 5789999999 9999887 677899999875 355777775555556788887 88999999888888
Q ss_pred EEEEEEECCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 378 SYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 378 ~~ly~~d~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
.+||++|+++++.++|+.....+... +++++.++|. +.......||++++++++.++|+
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~-~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYS-AGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred cEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEE-ECCCCCceEEEEECCCCCEEEee
Confidence 89999999999999998764333333 4455555554 44455678999999999877665
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-23 Score=221.48 Aligned_cols=264 Identities=13% Similarity=0.203 Sum_probs=192.8
Q ss_pred ccCceEEcCCCcEEEEeecCCC---CCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCE--EEEEECCC
Q 004816 90 RLGGTAVDGHGRLIWLESRPTE---AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT--VIFSNYKD 164 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~---~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~ 164 (729)
-.+.+.+. +.++.|+..+.+. ..+..||..+.+| +.+++|+...... ....|+++++. ++|++..+
T Consensus 138 ~tg~~g~~-~~~iayv~~~~~~~~~~~~~~l~~~d~dG-~~~~~lt~~~~~~-------~sP~wSPDG~~~~~~y~S~~~ 208 (428)
T PRK01029 138 LTGVPGIS-SGKIIFSLSTTNSDTELKQGELWSVDYDG-QNLRPLTQEHSLS-------ITPTWMHIGSGFPYLYVSYKL 208 (428)
T ss_pred HcCCCccc-cCEEEEEEeeCCcccccccceEEEEcCCC-CCceEcccCCCCc-------ccceEccCCCceEEEEEEccC
Confidence 34567777 8999999765432 2366899998883 4788888643111 23568888776 56677655
Q ss_pred C--cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE--EcCC---CceEEee
Q 004816 165 Q--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI--ALNG---QNIQVLV 237 (729)
Q Consensus 165 ~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~--dl~~---g~~~~lt 237 (729)
+ +||++++++ ++.++|+... .....++|||||++|+|+.+..+ ..++|+. ++++ ++.++|+
T Consensus 209 g~~~I~~~~l~~--g~~~~lt~~~----g~~~~p~wSPDG~~Laf~s~~~g------~~di~~~~~~~~~g~~g~~~~lt 276 (428)
T PRK01029 209 GVPKIFLGSLEN--PAGKKILALQ----GNQLMPTFSPRKKLLAFISDRYG------NPDLFIQSFSLETGAIGKPRRLL 276 (428)
T ss_pred CCceEEEEECCC--CCceEeecCC----CCccceEECCCCCEEEEEECCCC------CcceeEEEeecccCCCCcceEee
Confidence 4 899999998 8889998763 22356899999999999986432 2356664 5554 5678888
Q ss_pred eCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 238 SGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 238 ~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
.+. .....|+|||||++|+|++. +.+ ..+||+++++..+.. .+.+.... .....+.|||||+ |+|..
T Consensus 277 ~~~~~~~~~p~wSPDG~~Laf~s~-~~g----~~~ly~~~~~~~g~~--~~~lt~~~----~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 277 NEAFGTQGNPSFSPDGTRLVFVSN-KDG----RPRIYIMQIDPEGQS--PRLLTKKY----RNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred cCCCCCcCCeEECCCCCEEEEEEC-CCC----CceEEEEECcccccc--eEEeccCC----CCccceeECCCCCEEEEEE
Confidence 653 34567999999999999983 322 357999988622221 22222222 3446799999999 99988
Q ss_pred ecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeecc
Q 004816 316 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 316 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~ 395 (729)
.. .+..+|+++|+++++.+.|+........+.|++ |++.|++.+...+...||++++++++.++|+.
T Consensus 346 ~~-~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp------------DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 346 VI-KGVRQICVYDLATGRDYQLTTSPENKESPSWAI------------DSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred cC-CCCcEEEEEECCCCCeEEccCCCCCccceEECC------------CCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 77 677899999999999999986554556788886 88899999888888999999999999998886
Q ss_pred CCc
Q 004816 396 PFT 398 (729)
Q Consensus 396 ~~~ 398 (729)
...
T Consensus 413 ~~g 415 (428)
T PRK01029 413 GSG 415 (428)
T ss_pred CCC
Confidence 543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-22 Score=215.66 Aligned_cols=244 Identities=14% Similarity=0.163 Sum_probs=183.0
Q ss_pred CEEEEEECCC-----CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 155 DTVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 155 ~~i~~~~~~~-----~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
++|+|+.... .+||++|.++ ...++++.. ......++|||||++|+|++.... ..+||+++++
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg--~~~~~lt~~----~~~~~~p~wSPDG~~la~~s~~~g------~~~i~i~dl~ 231 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESG------RSALVIQTLA 231 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCC--CCCEEeecC----CCceeeeEEcCCCCEEEEEEecCC------CcEEEEEECC
Confidence 5788876532 2899999997 788889876 345678999999999999875432 3579999999
Q ss_pred CCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 230 GQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 230 ~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
+|+.++|+...+....|.|||||++|+|+.... ...+||++|++ +++. ..+... . .....+.|+|||
T Consensus 232 ~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~-tg~~--~~lt~~-~----~~~~~~~wSPDG 298 (429)
T PRK03629 232 NGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLA-SGQI--RQVTDG-R----SNNTEPTWFPDS 298 (429)
T ss_pred CCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECC-CCCE--EEccCC-C----CCcCceEECCCC
Confidence 999999887666667899999999999987332 23569999998 6765 333333 2 345689999999
Q ss_pred c-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCC
Q 004816 310 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 388 (729)
Q Consensus 310 ~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g 388 (729)
+ |+|.+++ .+..+||++|+++++.++++........+.|++ |++.|++....++..+||+++++++
T Consensus 299 ~~I~f~s~~-~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------DG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 299 QNLAYTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CEEEEEeCC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEEccCCCceEEEEECCCC
Confidence 9 9999887 677899999999998888875433344566765 8889998888888889999999999
Q ss_pred ceEeeccCCcce-EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 389 SLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 389 ~~~~lt~~~~~v-~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
+.+.|+...... ..+++++.. +++.+.......|++++++++..++|+
T Consensus 366 ~~~~Lt~~~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 366 GVQVLTDTFLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CeEEeCCCCCCCCceECCCCCE-EEEEEcCCCceEEEEEECCCCCeEECc
Confidence 999998654222 223555544 445554555566999999887765553
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-22 Score=217.26 Aligned_cols=245 Identities=15% Similarity=0.196 Sum_probs=186.7
Q ss_pred CCEEEEEECCCC------cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 154 GDTVIFSNYKDQ------RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 154 ~~~i~~~~~~~~------~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
..+|+|+....+ +||++|.++ ...++|+.. ......++|||||++|+|+..... ..+||++|
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg--~~~~~lt~~----~~~v~~p~wSpDG~~lay~s~~~g------~~~i~~~d 232 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDG--ANVRYLTDG----SSLVLTPRFSPNRQEITYMSYANG------RPRVYLLD 232 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCC--CCcEEEecC----CCCeEeeEECCCCCEEEEEEecCC------CCEEEEEE
Confidence 458888875433 899999987 888999976 345678999999999999976442 25899999
Q ss_pred cCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 228 LNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 228 l~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
+++|+.++++...+....|+|||||++|+|..... ...+||++|++ +++. .++.. .. .....+.|+|
T Consensus 233 l~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~--~~Lt~-~~----~~~~~~~~sp 299 (435)
T PRK05137 233 LETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG-----GNTDIYTMDLR-SGTT--TRLTD-SP----AIDTSPSYSP 299 (435)
T ss_pred CCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC-----CCceEEEEECC-CCce--EEccC-CC----CccCceeEcC
Confidence 99999999987666667899999999999987432 24679999998 6765 23332 22 3345799999
Q ss_pred CCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 308 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 308 DG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
||+ |+|.+++ .+..+||++|+++++.++|+........+.|++ +++.|++.....+..+|++++++
T Consensus 300 DG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp------------dG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 300 DGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP------------RGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred CCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcccCeEECC------------CCCEEEEEEcCCCceEEEEEECC
Confidence 999 9998877 677899999999999999986555556678887 88899888877777899999998
Q ss_pred CCceEeeccCCcceEE--eeeeCCEEEEEEeCCCCC--ceEEEEEcCCCcceeee
Q 004816 387 GHSLSLLDIPFTDIDN--ITLGNDCLFVEGASGVEP--SSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 387 ~g~~~~lt~~~~~v~~--~~~~~~~~~~~~~~~~~~--~~ly~~d~~~~~~~~lt 437 (729)
++..+.++.+. .+.. ++++++.++|........ ..||++++++++.++|+
T Consensus 367 ~~~~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 367 GSGERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCceEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 88888887653 2332 355666666655544432 57999999888765543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=209.87 Aligned_cols=251 Identities=10% Similarity=0.065 Sum_probs=185.2
Q ss_pred EEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCE-EEEEECC--CCcEEEEe
Q 004816 95 AVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYK--DQRLYKHS 171 (729)
Q Consensus 95 ~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~--~~~l~~~d 171 (729)
.|+ .+.+|++.... ..++.||..+.++. .++.++..... -...|+++++. ++|++.. ..+||++|
T Consensus 152 ~f~-~r~~~v~~~~~--~~~~~l~~~d~dg~-~~~~~~~~~~~--------~~p~wSpDG~~~i~y~s~~~~~~~Iyv~d 219 (419)
T PRK04043 152 DWM-KRKVVFSKYTG--PKKSNIVLADYTLT-YQKVIVKGGLN--------IFPKWANKEQTAFYYTSYGERKPTLYKYN 219 (419)
T ss_pred Cce-eeEEEEEEccC--CCcceEEEECCCCC-ceeEEccCCCe--------EeEEECCCCCcEEEEEEccCCCCEEEEEE
Confidence 455 56666665321 23678999988833 45556543211 13567777875 6776655 35999999
Q ss_pred CCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCC
Q 004816 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPR 251 (729)
Q Consensus 172 ~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPD 251 (729)
+.+ ++.++|+... .....+.|||||++|+|+....+ ..+||++++++++.++||........|.||||
T Consensus 220 l~t--g~~~~lt~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPD 287 (419)
T PRK04043 220 LYT--GKKEKIASSQ----GMLVVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNTKTLTQITNYPGIDVNGNFVED 287 (419)
T ss_pred CCC--CcEEEEecCC----CcEEeeEECCCCCEEEEEEccCC------CcEEEEEECCCCcEEEcccCCCccCccEECCC
Confidence 998 8899998752 33356789999999999976532 36899999999999999987766678999999
Q ss_pred CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCC-----CceEEE
Q 004816 252 GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-----GFWNLH 325 (729)
Q Consensus 252 G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~-----g~~~l~ 325 (729)
|++|+|++ ++. ...+||++|++ +|+..+ ++... . ..+.|||||+ |+|+..... +..+|+
T Consensus 288 G~~I~F~S-dr~----g~~~Iy~~dl~-~g~~~r--lt~~g-----~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~ 352 (419)
T PRK04043 288 DKRIVFVS-DRL----GYPNIFMKKLN-SGSVEQ--VVFHG-----K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLY 352 (419)
T ss_pred CCEEEEEE-CCC----CCceEEEEECC-CCCeEe--CccCC-----C--cCceECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence 99999998 433 34689999998 677533 33222 1 1358999999 888876521 337899
Q ss_pred EEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCC
Q 004816 326 KWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 397 (729)
Q Consensus 326 ~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~ 397 (729)
++|+++++.+.|+... ....|.|+| |++.|+|.+...+...|+.+++++.....|....
T Consensus 353 v~d~~~g~~~~LT~~~-~~~~p~~SP------------DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~ 411 (419)
T PRK04043 353 LISTNSDYIRRLTANG-VNQFPRFSS------------DGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKV 411 (419)
T ss_pred EEECCCCCeEECCCCC-CcCCeEECC------------CCCEEEEEEccCCcEEEEEEecCCCeeEEeecCC
Confidence 9999999999998643 334688887 8999999998888889999999988777776533
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=208.69 Aligned_cols=230 Identities=10% Similarity=0.036 Sum_probs=172.0
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCE-EEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFY 243 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~-l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~ 243 (729)
.+||++|.++ ...++++.. . ....++|||||++ ++|++.... ..+||++|+++|+.++|+...+..
T Consensus 169 ~~l~~~d~dg--~~~~~~~~~----~-~~~~p~wSpDG~~~i~y~s~~~~------~~~Iyv~dl~tg~~~~lt~~~g~~ 235 (419)
T PRK04043 169 SNIVLADYTL--TYQKVIVKG----G-LNIFPKWANKEQTAFYYTSYGER------KPTLYKYNLYTGKKEKIASSQGML 235 (419)
T ss_pred ceEEEECCCC--CceeEEccC----C-CeEeEEECCCCCcEEEEEEccCC------CCEEEEEECCCCcEEEEecCCCcE
Confidence 4999999997 778888876 2 3467899999997 555554321 258999999999999998766666
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCce
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 322 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~ 322 (729)
..|.|||||++|+|+.... ...+||++|++ +++.++ ++... .....+.|+|||+ |+|++++ .+..
T Consensus 236 ~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~-~g~~~~--LT~~~-----~~d~~p~~SPDG~~I~F~Sdr-~g~~ 301 (419)
T PRK04043 236 VVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTN-TKTLTQ--ITNYP-----GIDVNGNFVEDDKRIVFVSDR-LGYP 301 (419)
T ss_pred EeeEECCCCCEEEEEEccC-----CCcEEEEEECC-CCcEEE--cccCC-----CccCccEECCCCCEEEEEECC-CCCc
Confidence 7799999999999988432 35789999998 676533 33222 2235789999999 9999988 7888
Q ss_pred EEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC------CeEEEEEEECCCCceEeeccC
Q 004816 323 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN------GRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 323 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~------g~~~ly~~d~~~g~~~~lt~~ 396 (729)
+||++|+++|+.++++.... . .+.|++ +++.|++..... +..+||+++++++..++|+..
T Consensus 302 ~Iy~~dl~~g~~~rlt~~g~-~-~~~~SP------------DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFHGK-N-NSSVST------------YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred eEEEEECCCCCeEeCccCCC-c-CceECC------------CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC
Confidence 99999999999988884321 1 346776 888888887654 447999999999999999976
Q ss_pred Ccce-EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 397 FTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 397 ~~~v-~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
.... ..++++++.++|. +.......|+.+++++....+|
T Consensus 368 ~~~~~p~~SPDG~~I~f~-~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 368 GVNQFPRFSSDGGSIMFI-KYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCcCCeEECCCCCEEEEE-EccCCcEEEEEEecCCCeeEEe
Confidence 4332 3335666655555 4445556799999988765444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=212.35 Aligned_cols=242 Identities=15% Similarity=0.176 Sum_probs=180.2
Q ss_pred EEEEEECCC-----CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 156 TVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 156 ~i~~~~~~~-----~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
+|+|+.... .+||++|.++ ...++|+.. ......++|||||++|+|++.... ..+||++|+++
T Consensus 184 riayv~~~~~~~~~~~l~i~d~dG--~~~~~l~~~----~~~~~~p~wSPDG~~La~~s~~~g------~~~L~~~dl~t 251 (448)
T PRK04792 184 RIAYVVVNDKDKYPYQLMIADYDG--YNEQMLLRS----PEPLMSPAWSPDGRKLAYVSFENR------KAEIFVQDIYT 251 (448)
T ss_pred EEEEEEeeCCCCCceEEEEEeCCC--CCceEeecC----CCcccCceECCCCCEEEEEEecCC------CcEEEEEECCC
Confidence 666765432 2899999987 777888876 345678999999999999976532 36899999999
Q ss_pred CceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 231 QNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 231 g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
|+.++++...+....|.|||||++|+|+.... ...+||++|++ +++... +.. .. .....+.|+|||+
T Consensus 252 g~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~-tg~~~~--lt~-~~----~~~~~p~wSpDG~ 318 (448)
T PRK04792 252 QVREKVTSFPGINGAPRFSPDGKKLALVLSKD-----GQPEIYVVDIA-TKALTR--ITR-HR----AIDTEPSWHPDGK 318 (448)
T ss_pred CCeEEecCCCCCcCCeeECCCCCEEEEEEeCC-----CCeEEEEEECC-CCCeEE--Ccc-CC----CCccceEECCCCC
Confidence 99888887655556899999999999987433 24679999998 676532 322 22 3346789999999
Q ss_pred -EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 311 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 311 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
|+|.++. .+..+||++|+++++.+.|+........+.|++ |++.|++.+...+..+||++++++++
T Consensus 319 ~I~f~s~~-~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp------------DG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 319 SLIFTSER-GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP------------DGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred EEEEEECC-CCCceEEEEECCCCCEEEEecCCCCCcCeeECC------------CCCEEEEEEecCCceEEEEEECCCCC
Confidence 8898877 677899999999999888874332333466776 88899998887888899999999999
Q ss_pred eEeeccCCcceE-EeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 390 LSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 390 ~~~lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
.+.|+....+.. .++++++.++|. +.......+|.++.+++..++|
T Consensus 386 ~~~lt~~~~d~~ps~spdG~~I~~~-~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 386 MQVLTSTRLDESPSVAPNGTMVIYS-TTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred eEEccCCCCCCCceECCCCCEEEEE-EecCCceEEEEEECCCCceEEC
Confidence 988886543322 335555555544 4455556799999877765544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=209.24 Aligned_cols=251 Identities=12% Similarity=0.092 Sum_probs=189.0
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~~ 176 (729)
.++++|+..+.++..++.||.++.++ +..+.++.... ......|+++++.|+|..... .+||++++.+
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg-~~~~~lt~~~~-------~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-- 232 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-- 232 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCC-CCCEEeecCCC-------ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC--
Confidence 46788887655445577899998873 35666765431 122456888888999986543 4899999998
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
++.++|+... .....+.|||||++|+|+....+ ..+||++|+++++.++++.+......|.|||||++|+
T Consensus 233 G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~ 302 (429)
T PRK03629 233 GAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 302 (429)
T ss_pred CCeEEccCCC----CCcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEE
Confidence 8888888652 23467899999999999865432 2479999999999999998766678899999999999
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
|++ ++.+ ..+||++|++ +++.. ++.... .....+.|||||+ |+|.... .+..+|+++|+++++.+
T Consensus 303 f~s-~~~g----~~~Iy~~d~~-~g~~~--~lt~~~-----~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 303 YTS-DQAG----RPQVYKVNIN-GGAPQ--RITWEG-----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ 368 (429)
T ss_pred EEe-CCCC----CceEEEEECC-CCCeE--EeecCC-----CCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE
Confidence 998 3322 3579999998 66653 232221 3345789999999 8887766 66778999999999988
Q ss_pred EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 336 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 336 ~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
.|+.. .....|.|++ |++.|++.+.+.+...|++++++++..+.|+..
T Consensus 369 ~Lt~~-~~~~~p~~Sp------------DG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~ 416 (429)
T PRK03629 369 VLTDT-FLDETPSIAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT 416 (429)
T ss_pred EeCCC-CCCCCceECC------------CCCEEEEEEcCCCceEEEEEECCCCCeEECccC
Confidence 88843 2334677876 889999999887888899999998888888653
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=198.77 Aligned_cols=213 Identities=14% Similarity=0.110 Sum_probs=155.9
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCC-CCCchhHH
Q 004816 462 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFR 540 (729)
Q Consensus 462 ~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs-~g~g~~~~ 540 (729)
-+.+. +|..|.||+..|.+.. .++.++||++||..... ..+..++.+|+++||+|+.+|+||+ |.++.++.
T Consensus 13 ~~~~~-dG~~L~Gwl~~P~~~~-----~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~ 84 (307)
T PRK13604 13 VICLE-NGQSIRVWETLPKENS-----PKKNNTILIASGFARRM--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTID 84 (307)
T ss_pred eEEcC-CCCEEEEEEEcCcccC-----CCCCCEEEEeCCCCCCh--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccc
Confidence 35566 8999999999997521 45678999999974432 3477899999999999999999876 55554443
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchh---
Q 004816 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKF--- 617 (729)
Q Consensus 541 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~--- 617 (729)
.... .. ...|+.++++|+.++ +.++|+|+||||||.+++.++..+ .++++|+.+|+.++..+......+
T Consensus 85 ~~t~-s~---g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~~-~v~~lI~~sp~~~l~d~l~~~~~~~~~ 156 (307)
T PRK13604 85 EFTM-SI---GKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINEI-DLSFLITAVGVVNLRDTLERALGYDYL 156 (307)
T ss_pred cCcc-cc---cHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcCC-CCCEEEEcCCcccHHHHHHHhhhcccc
Confidence 2211 11 279999999999886 346899999999999987666644 499999999999977554421111
Q ss_pred --hh----h---hh------hhhcCCh---hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEE
Q 004816 618 --ES----R---YI------DNLVGSE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 679 (729)
Q Consensus 618 --~~----~---~~------~~~~~~~---~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 679 (729)
.. . +. ..+..+. ..+...+|+..+++++.|+|+|||.+|..||++++++++++++. .+++
T Consensus 157 ~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kk 234 (307)
T PRK13604 157 SLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCK 234 (307)
T ss_pred cCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcE
Confidence 00 0 00 0000000 11123566677888999999999999999999999999999764 3679
Q ss_pred EEEECCCCcccCC
Q 004816 680 LVEYEGEQHGFRK 692 (729)
Q Consensus 680 ~~~~~~~gH~~~~ 692 (729)
++++||++|.+..
T Consensus 235 l~~i~Ga~H~l~~ 247 (307)
T PRK13604 235 LYSLIGSSHDLGE 247 (307)
T ss_pred EEEeCCCccccCc
Confidence 9999999999864
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=209.48 Aligned_cols=250 Identities=14% Similarity=0.183 Sum_probs=186.5
Q ss_pred CCcEEEEeecCC-CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCC
Q 004816 99 HGRLIWLESRPT-EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK 175 (729)
Q Consensus 99 g~~~~~~~~~~~-~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~ 175 (729)
..+++|+..... +..+..||.++.+ ++..++++.....+ ....|+++++.|+|..... .+||++++.+
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~d-g~~~~~lt~~~~~v-------~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~- 235 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQD-GANVRYLTDGSSLV-------LTPRFSPNRQEITYMSYANGRPRVYLLDLET- 235 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCC-CCCcEEEecCCCCe-------EeeEECCCCCEEEEEEecCCCCEEEEEECCC-
Confidence 678999876432 1226789988877 33567777543111 1345777788999987543 4899999998
Q ss_pred CCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeE
Q 004816 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERM 255 (729)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~l 255 (729)
++.++|+... .....++|||||++|+|+..... ..+||++|+++++.++|+........|.|||||++|
T Consensus 236 -g~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 236 -GQRELVGNFP----GMTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred -CcEEEeecCC----CcccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCCCCccCceeEcCCCCEE
Confidence 8888888652 33467899999999999876442 367999999999999999877667789999999999
Q ss_pred EEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeE
Q 004816 256 AWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 256 a~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
+|.+ ++.+ ..+||++|++ +++.. ++..+ . .....+.|||||+ |+|.... .+..+|+++|++++..
T Consensus 305 ~f~s-~~~g----~~~Iy~~d~~-g~~~~--~lt~~-~----~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 305 VFES-DRSG----SPQLYVMNAD-GSNPR--RISFG-G----GRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE 370 (435)
T ss_pred EEEE-CCCC----CCeEEEEECC-CCCeE--EeecC-C----CcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce
Confidence 9988 3332 3579999988 66653 33332 2 3445789999999 8888765 5678999999988877
Q ss_pred EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe---EEEEEEECCCCceEeecc
Q 004816 335 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR---SYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 335 ~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~---~~ly~~d~~~g~~~~lt~ 395 (729)
+.++.. .....+.|++ |++.|++.+...+. ..||.++++++..+.|+.
T Consensus 371 ~~lt~~-~~~~~p~~sp------------DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 371 RILTSG-FLVEGPTWAP------------NGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred EeccCC-CCCCCCeECC------------CCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 777643 3455678876 88899998876655 689999999988887764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-21 Score=207.55 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=178.6
Q ss_pred CEEEEEECCC--CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 155 DTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 155 ~~i~~~~~~~--~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
.+|+|..... .+||++|.++ ...++++.. ...+..++|||||++|+|+..... ..+||++|+++|+
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG--~~~~~l~~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~I~~~dl~~g~ 231 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADG--QNAQSALSS----PEPIISPAWSPDGTKLAYVSFESK------KPVVYVHDLATGR 231 (427)
T ss_pred cEEEEEEccCCccEEEEECCCC--CCceEeccC----CCCcccceEcCCCCEEEEEEccCC------CcEEEEEECCCCC
Confidence 5788887543 3899999987 777888765 345678999999999999875432 3579999999999
Q ss_pred eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-E
Q 004816 233 IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 311 (729)
Q Consensus 233 ~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l 311 (729)
.++++...+....|+|||||++|+|....+ ...+||++|++ ++... .+.. .. .....+.|+|||+ |
T Consensus 232 ~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~~--~lt~-~~----~~~~~~~wSpDG~~l 298 (427)
T PRK02889 232 RRVVANFKGSNSAPAWSPDGRTLAVALSRD-----GNSQIYTVNAD-GSGLR--RLTQ-SS----GIDTEPFFSPDGRSI 298 (427)
T ss_pred EEEeecCCCCccceEECCCCCEEEEEEccC-----CCceEEEEECC-CCCcE--ECCC-CC----CCCcCeEEcCCCCEE
Confidence 888876556667899999999999976332 24679999987 56542 2322 22 3345789999999 9
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
+|.+++ .+..+||.++.++++.++++........+.|++ +++.|++.+...+..+||++++++++.+
T Consensus 299 ~f~s~~-~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 299 YFTSDR-GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP------------DGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred EEEecC-CCCcEEEEEECCCCceEEEecCCCCcCceEECC------------CCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 998876 677899999998888888874333334567776 8889998888778789999999999999
Q ss_pred eeccCCcce-EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 392 LLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 392 ~lt~~~~~v-~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
+++...... ..++++++.++| .+.......+|.+++++...++|
T Consensus 366 ~lt~~~~~~~p~~spdg~~l~~-~~~~~g~~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 366 ALTDTTRDESPSFAPNGRYILY-ATQQGGRSVLAAVSSDGRIKQRL 410 (427)
T ss_pred EccCCCCccCceECCCCCEEEE-EEecCCCEEEEEEECCCCceEEe
Confidence 988653322 222455555544 44455556799999876554433
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=206.58 Aligned_cols=252 Identities=12% Similarity=0.123 Sum_probs=186.4
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC--cEEEEeCCCCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKD 176 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~d~~~~~ 176 (729)
..++.|+..+......+.|+..+.++ +..+.++..+. ......|+++++.|+|....++ +||++|+.+
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG-~~~~~l~~~~~-------~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-- 251 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDG-YNEQMLLRSPE-------PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-- 251 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCC-CCceEeecCCC-------cccCceECCCCCEEEEEEecCCCcEEEEEECCC--
Confidence 45677776544333456788877763 34566665431 1124568888889999876543 899999998
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
++.++++... .....++|||||++|+|+....+ ..+||++|+++++.++|+........|.|||||++|+
T Consensus 252 g~~~~lt~~~----g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~ 321 (448)
T PRK04792 252 QVREKVTSFP----GINGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLI 321 (448)
T ss_pred CCeEEecCCC----CCcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEE
Confidence 8888888652 22357899999999999865432 3689999999999999988766667899999999999
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
|.+ +..+ ..+||++|++ +|+... +.... .....+.|+|||+ |+|.... .+..+|+++|+++++.+
T Consensus 322 f~s-~~~g----~~~Iy~~dl~-~g~~~~--Lt~~g-----~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 322 FTS-ERGG----KPQIYRVNLA-SGKVSR--LTFEG-----EQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGAMQ 387 (448)
T ss_pred EEE-CCCC----CceEEEEECC-CCCEEE--EecCC-----CCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCCeE
Confidence 987 3322 3579999998 676533 32222 2234689999999 8887776 67789999999999988
Q ss_pred EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCC
Q 004816 336 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 397 (729)
Q Consensus 336 ~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~ 397 (729)
.|+... ....|.|++ +++.|++.+..+|...||+++.+++..+.++.+.
T Consensus 388 ~lt~~~-~d~~ps~sp------------dG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 388 VLTSTR-LDESPSVAP------------NGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred EccCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 887442 233567776 8899999999889899999999888888886543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=209.00 Aligned_cols=243 Identities=14% Similarity=0.201 Sum_probs=179.4
Q ss_pred CEEEEEECCC------CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 155 DTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 155 ~~i~~~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.+|+|+.... .+|+++|.++ +..++++.. ......++|||||++|+|++.... ..+||++++
T Consensus 163 ~~ia~v~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~----~~~~~~p~wSpDG~~la~~s~~~~------~~~l~~~~l 230 (430)
T PRK00178 163 TRILYVTAERFSVNTRYTLQRSDYDG--ARAVTLLQS----REPILSPRWSPDGKRIAYVSFEQK------RPRIFVQNL 230 (430)
T ss_pred eeEEEEEeeCCCCCcceEEEEECCCC--CCceEEecC----CCceeeeeECCCCCEEEEEEcCCC------CCEEEEEEC
Confidence 3677865322 1699999997 778888766 344678899999999999976532 358999999
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
++|+.++++...+....|+|||||++|+|..... ...+||++|++ +++.. .+. ... .....+.|+||
T Consensus 231 ~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~~--~lt-~~~----~~~~~~~~spD 297 (430)
T PRK00178 231 DTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD-----GNPEIYVMDLA-SRQLS--RVT-NHP----AIDTEPFWGKD 297 (430)
T ss_pred CCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC-----CCceEEEEECC-CCCeE--Ecc-cCC----CCcCCeEECCC
Confidence 9999999886655556799999999999987332 23679999998 67653 232 222 33467899999
Q ss_pred Cc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
|+ ++|.++. .+..+||++++.+++.++++........+.|++ +++.+++....++..+||++|+++
T Consensus 298 g~~i~f~s~~-~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------dg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 298 GRTLYFTSDR-GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA------------DGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccceEECC------------CCCEEEEEEccCCceEEEEEECCC
Confidence 99 9999877 678899999999999888874333334566766 888999988777888899999999
Q ss_pred CceEeeccCCcceEE-eeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 388 HSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 388 g~~~~lt~~~~~v~~-~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
++.+.|+........ ++++++ .+++.+.......||.++++++..++|
T Consensus 365 g~~~~lt~~~~~~~p~~spdg~-~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 365 GSVRILTDTSLDESPSVAPNGT-MLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred CCEEEccCCCCCCCceECCCCC-EEEEEEecCCceEEEEEECCCCceEEC
Confidence 999999875433322 344554 555555555556799999877665443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-21 Score=207.84 Aligned_cols=244 Identities=16% Similarity=0.173 Sum_probs=180.3
Q ss_pred CEEEEEECCC------CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 155 DTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 155 ~~i~~~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.+|+|+.... .+||++|.++ +..++|+.. ......++|||||++|+|++.... ..+||++++
T Consensus 168 ~~ia~v~~~~~~~~~~~~l~i~D~~g--~~~~~lt~~----~~~v~~p~wSpDg~~la~~s~~~~------~~~l~~~dl 235 (433)
T PRK04922 168 TRIAYVTVSGAGGAMRYALQVADSDG--YNPQTILRS----AEPILSPAWSPDGKKLAYVSFERG------RSAIYVQDL 235 (433)
T ss_pred ceEEEEEEeCCCCCceEEEEEECCCC--CCceEeecC----CCccccccCCCCCCEEEEEecCCC------CcEEEEEEC
Confidence 3677765421 2799999987 778899876 345678999999999999975432 357999999
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
++|+.++++...+....|.|||||++|+|+.... ...+||++|++ +++... +.. .. .....+.|+||
T Consensus 236 ~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~-~g~~~~--lt~-~~----~~~~~~~~spD 302 (433)
T PRK04922 236 ATGQRELVASFRGINGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLG-SRQLTR--LTN-HF----GIDTEPTWAPD 302 (433)
T ss_pred CCCCEEEeccCCCCccCceECCCCCEEEEEEeCC-----CCceEEEEECC-CCCeEE--Ccc-CC----CCccceEECCC
Confidence 9999888876555556799999999999987433 23679999998 676532 222 22 23357899999
Q ss_pred Cc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
|+ ++|.+++ .+..+||++++++++.++++........+.|++ +++.|++.+..++..+|+++++++
T Consensus 303 G~~l~f~sd~-~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 303 GKSIYFTSDR-GGRPQIYRVAASGGSAERLTFQGNYNARASVSP------------DGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred CCEEEEEECC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEECCCCceeEEEEECCC
Confidence 99 9999887 677899999999998888874333334567776 888898887767778999999999
Q ss_pred CceEeeccCCcceE-EeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 388 HSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 388 g~~~~lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
++.+.|+.+..... .++++++.+++ .+.......||.++++++..++|+
T Consensus 370 g~~~~Lt~~~~~~~p~~spdG~~i~~-~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 370 GSVRTLTPGSLDESPSFAPNGSMVLY-ATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CCeEECCCCCCCCCceECCCCCEEEE-EEecCCceEEEEEECCCCceEEcc
Confidence 99999987643322 22445554544 444455667999999877665543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=203.95 Aligned_cols=253 Identities=14% Similarity=0.148 Sum_probs=187.9
Q ss_pred CCcEEEEeecC-CCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC--cEEEEeCCCC
Q 004816 99 HGRLIWLESRP-TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSK 175 (729)
Q Consensus 99 g~~~~~~~~~~-~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~d~~~~ 175 (729)
+.+++|+..+. .+..++.||.++.+ ++..+.++..... .....|+++++.|+|.....+ +||++++.+
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~-g~~~~~lt~~~~~-------v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~- 237 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSD-GYNPQTILRSAEP-------ILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT- 237 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCC-CCCceEeecCCCc-------cccccCCCCCCEEEEEecCCCCcEEEEEECCC-
Confidence 56788886543 23446778888876 3356777654311 124567788889999876543 799999998
Q ss_pred CCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeE
Q 004816 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERM 255 (729)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~l 255 (729)
++.++++..+ .....++|||||++|+|+....+ ..+||++++++++.++++........|+|||||++|
T Consensus 238 -g~~~~l~~~~----g~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l 306 (433)
T PRK04922 238 -GQRELVASFR----GINGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSI 306 (433)
T ss_pred -CCEEEeccCC----CCccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECccCCCCccceEECCCCCEE
Confidence 8888888652 22357899999999999875442 257999999999999998766556779999999999
Q ss_pred EEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeE
Q 004816 256 AWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 256 a~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
+|.+ ++.+ ..+||+++++ +++... +.... .+...+.|||||+ |+|.... .+..+|+++|+++++.
T Consensus 307 ~f~s-d~~g----~~~iy~~dl~-~g~~~~--lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 307 YFTS-DRGG----RPQIYRVAAS-GGSAER--LTFQG-----NYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSV 372 (433)
T ss_pred EEEE-CCCC----CceEEEEECC-CCCeEE--eecCC-----CCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCe
Confidence 9997 4332 3579999998 666432 32222 2345789999999 8887765 5677999999999998
Q ss_pred EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc
Q 004816 335 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 335 ~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
+.|+... ....+.|++ +++.+++.++..+...||.++++++..++|+.+..
T Consensus 373 ~~Lt~~~-~~~~p~~sp------------dG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 373 RTLTPGS-LDESPSFAP------------NGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred EECCCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEEcccCCC
Confidence 8887543 334577776 88999999998889999999999888888876433
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=205.22 Aligned_cols=245 Identities=18% Similarity=0.178 Sum_probs=178.4
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC----
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS---- 240 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~---- 240 (729)
+.+|++|+.+ ++.++|+.. ......+.|||||+.|+|+++ .+||+.++.+++.++||.+.
T Consensus 23 ~~y~i~d~~~--~~~~~l~~~----~~~~~~~~~sP~g~~~~~v~~----------~nly~~~~~~~~~~~lT~dg~~~i 86 (353)
T PF00930_consen 23 GDYYIYDIET--GEITPLTPP----PPKLQDAKWSPDGKYIAFVRD----------NNLYLRDLATGQETQLTTDGEPGI 86 (353)
T ss_dssp EEEEEEETTT--TEEEESS-E----ETTBSEEEE-SSSTEEEEEET----------TEEEEESSTTSEEEESES--TTTE
T ss_pred eeEEEEecCC--CceEECcCC----ccccccceeecCCCeeEEEec----------CceEEEECCCCCeEEeccccceeE
Confidence 4799999998 888888875 234578899999999999986 46999999999999998643
Q ss_pred --------------CeeeeeeeCCCCCeEEEEEecCCC----------------------------CCCCCcEEEEEEec
Q 004816 241 --------------DFYAFPRMDPRGERMAWIEWHHPN----------------------------MPWDKAELWVGYIS 278 (729)
Q Consensus 241 --------------~~~~~~~~SPDG~~la~~~~~~~~----------------------------~~~~~~~l~~~d~~ 278 (729)
+.....+|||||++|||.+.++.. .+....+|+++|++
T Consensus 87 ~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 87 YNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp EESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred EcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 233567899999999999976551 22234468899998
Q ss_pred CCCCeeeeEEe---cCCCCCccccccCceeCCCCc-EEEEEe-cCCCceEEEEEEcCCCeEEEeeccCccccCCcccccC
Q 004816 279 ENGDVYKRVCV---AGFDPTIVESPTEPKWSSKGE-LFFVTD-RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGI 353 (729)
Q Consensus 279 ~~g~~~~~~~~---~~~~~~~~~~~~~~~wspDG~-l~~~~~-~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~ 353 (729)
+++...+... ...+ .++..+.|++|++ +++... +.+....|.++|+.+++.+.+..+. ...|....
T Consensus 167 -~~~~~~~~~~~~~~~~~----~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~----~~~Wv~~~ 237 (353)
T PF00930_consen 167 -SGKTTELDPPNSLNPQD----YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET----SDGWVDVY 237 (353)
T ss_dssp -STCCCEE---HHHHTSS----EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE----SSSSSSSS
T ss_pred -CCcEEEeeeccccCCCc----cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec----CCcceeee
Confidence 6765433333 2333 7888999999999 766554 4355667889999998887776433 56676555
Q ss_pred cceeee-eecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCce--EEEEEc
Q 004816 354 NSYEII-QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSS--VAKVTL 428 (729)
Q Consensus 354 ~~~~~l-~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~--ly~~d~ 428 (729)
....|+ + ++..+++.++++|..|||+++.+++..++||.+.+.|..+ .+.++..+|+.++...|.+ ||++++
T Consensus 238 ~~~~~~~~---~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 238 DPPHFLGP---DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp SEEEE-TT---TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred cccccccC---CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 566665 4 7888999999999999999999999999999999999665 4455555555555555544 999999
Q ss_pred C-CCcceeee
Q 004816 429 D-DHKLKAVD 437 (729)
Q Consensus 429 ~-~~~~~~lt 437 (729)
+ ++++++||
T Consensus 315 ~~~~~~~~LT 324 (353)
T PF00930_consen 315 DSGGEPKCLT 324 (353)
T ss_dssp TETTEEEESS
T ss_pred CCCCCeEecc
Confidence 9 88887776
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=202.35 Aligned_cols=249 Identities=15% Similarity=0.185 Sum_probs=183.6
Q ss_pred CcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCCCC
Q 004816 100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKDS 177 (729)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~~~ 177 (729)
++++|+.. ..++..||..+.++ ...+.++..... .....|+++++.|+|....+ .+||++|+.+ +
T Consensus 164 ~~iayv~~---~~~~~~L~~~D~dG-~~~~~l~~~~~~-------v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~--g 230 (427)
T PRK02889 164 TRIAYVIK---TGNRYQLQISDADG-QNAQSALSSPEP-------IISPAWSPDGTKLAYVSFESKKPVVYVHDLAT--G 230 (427)
T ss_pred cEEEEEEc---cCCccEEEEECCCC-CCceEeccCCCC-------cccceEcCCCCEEEEEEccCCCcEEEEEECCC--C
Confidence 56777753 24567788888762 345666543311 12356788888999987654 3799999998 8
Q ss_pred CCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEE
Q 004816 178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAW 257 (729)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~ 257 (729)
+.++++..+ .....++|||||++|+|+....+ ..+||++++++++.++|+........|.|||||++|+|
T Consensus 231 ~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f 300 (427)
T PRK02889 231 RRRVVANFK----GSNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYF 300 (427)
T ss_pred CEEEeecCC----CCccceEECCCCCEEEEEEccCC------CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEE
Confidence 888887552 23357899999999999865442 36899999999989999876666678999999999999
Q ss_pred EEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 258 IEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
++ ++.+ ..+||+++++ +++... +.... .+...+.|||||+ |+|.+.. .+..+|+++|+++++.+.
T Consensus 301 ~s-~~~g----~~~Iy~~~~~-~g~~~~--lt~~g-----~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 301 TS-DRGG----APQIYRMPAS-GGAAQR--VTFTG-----SYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLATGQVTA 366 (427)
T ss_pred Ee-cCCC----CcEEEEEECC-CCceEE--EecCC-----CCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCCCCeEE
Confidence 87 4333 3579999987 565422 22221 2335689999999 8888776 667799999999999888
Q ss_pred eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc
Q 004816 337 IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 337 l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
++... ....|.|++ +++.|++.++..|...||.++.+++..+.++.+..
T Consensus 367 lt~~~-~~~~p~~sp------------dg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 367 LTDTT-RDESPSFAP------------NGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred ccCCC-CccCceECC------------CCCEEEEEEecCCCEEEEEEECCCCceEEeecCCC
Confidence 87442 335678876 88999999999999999999998777777765433
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=202.83 Aligned_cols=251 Identities=13% Similarity=0.164 Sum_probs=186.5
Q ss_pred CCcEEEEeec-CCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCC
Q 004816 99 HGRLIWLESR-PTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK 175 (729)
Q Consensus 99 g~~~~~~~~~-~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~ 175 (729)
..++.|+... ..+.+++.|+..+.++ +..+.++..... .....|+++++.|+|....+ .+||++++++
T Consensus 162 ~~~ia~v~~~~~~~~~~~~l~~~d~~g-~~~~~l~~~~~~-------~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~- 232 (430)
T PRK00178 162 STRILYVTAERFSVNTRYTLQRSDYDG-ARAVTLLQSREP-------ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT- 232 (430)
T ss_pred eeeEEEEEeeCCCCCcceEEEEECCCC-CCceEEecCCCc-------eeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-
Confidence 4667777543 3345678898888773 355666543311 12345777788999987654 3899999998
Q ss_pred CCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeE
Q 004816 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERM 255 (729)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~l 255 (729)
++.++|+... .....+.|||||++|+|+....+ ..+||++|+++++.++|+........|.|||||++|
T Consensus 233 -g~~~~l~~~~----g~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i 301 (430)
T PRK00178 233 -GRREQITNFE----GLNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTL 301 (430)
T ss_pred -CCEEEccCCC----CCcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEE
Confidence 8888888652 22356899999999999875432 257999999999999998776667789999999999
Q ss_pred EEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeE
Q 004816 256 AWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 256 a~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
+|.+ ++.+ ..+||+++++ +|+... +.... .+...+.|||||+ ++|.... .+..+|+++|+++++.
T Consensus 302 ~f~s-~~~g----~~~iy~~d~~-~g~~~~--lt~~~-----~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 302 YFTS-DRGG----KPQIYKVNVN-GGRAER--VTFVG-----NYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEEE-CCCC----CceEEEEECC-CCCEEE--eecCC-----CCccceEECCCCCEEEEEEcc-CCceEEEEEECCCCCE
Confidence 9987 3332 3579999998 676533 22221 2335689999999 8888766 5677899999999998
Q ss_pred EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 335 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 335 ~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
+.|+... ....|.|++ +++.+++++.+.|...||.++.+++..+.|+.+
T Consensus 368 ~~lt~~~-~~~~p~~sp------------dg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~ 416 (430)
T PRK00178 368 RILTDTS-LDESPSVAP------------NGTMLIYATRQQGRGVLMLVSINGRVRLPLPTA 416 (430)
T ss_pred EEccCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCC
Confidence 8887532 333677776 889999999999999999999988777777654
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-21 Score=192.31 Aligned_cols=226 Identities=19% Similarity=0.257 Sum_probs=149.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCC-chhHHHhhccCCC--
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY-GREFRERLLGRWG-- 548 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~-g~~~~~~~~~~~~-- 548 (729)
+..+.+.|.+. ..++.|+||++||.++.. ..+...++.|+++||.|+++|+||.+.. +..........|.
T Consensus 12 ~~~~~~~p~~~-----~~~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK10566 12 IEVLHAFPAGQ-----RDTPLPTVFFYHGFTSSK--LVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQIL 84 (249)
T ss_pred cceEEEcCCCC-----CCCCCCEEEEeCCCCccc--chHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHH
Confidence 34455667541 134679999999985443 4567788999999999999999986532 1100000000011
Q ss_pred cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc-ch----hhhhhh
Q 004816 549 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HK----FESRYI 622 (729)
Q Consensus 549 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~-~~----~~~~~~ 622 (729)
....+|+.++++++.+++.+|.+||+++|||+||++++.++. +|+ +++++...+......+.... .. ....+
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 162 (249)
T PRK10566 85 LQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPW-VKCVASLMGSGYFTSLARTLFPPLIPETAAQQ- 162 (249)
T ss_pred HHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCC-eeEEEEeeCcHHHHHHHHHhcccccccccccH-
Confidence 123678888999999888889999999999999999999988 554 55554443322221111100 00 00000
Q ss_pred hhhcCChhhhhhcCcccccCCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCC--CEEEEEECCCCcccCCcccHHHH
Q 004816 623 DNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGL--PVALVEYEGEQHGFRKAENIKFT 699 (729)
Q Consensus 623 ~~~~~~~~~~~~~sp~~~~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~~~~gH~~~~~~~~~~~ 699 (729)
.........+...++...+.++ ++|+|++||++|.++|++++++++++++.+|. +++++++++++|.+. ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~-----~~~ 237 (249)
T PRK10566 163 AEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT-----PEA 237 (249)
T ss_pred HHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC-----HHH
Confidence 0000001122334455556666 68999999999999999999999999999886 478999999999874 356
Q ss_pred HHHHHHHHHHHh
Q 004816 700 LEQQMVFFARVV 711 (729)
Q Consensus 700 ~~~~~~fl~~~l 711 (729)
++.+++||+++|
T Consensus 238 ~~~~~~fl~~~~ 249 (249)
T PRK10566 238 LDAGVAFFRQHL 249 (249)
T ss_pred HHHHHHHHHhhC
Confidence 789999999875
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=189.43 Aligned_cols=241 Identities=20% Similarity=0.220 Sum_probs=158.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hhhhHHHhhCCcEEEEecCCCCC--
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGST-- 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la~~G~~v~~~d~rGs~-- 533 (729)
......+.+..-|..+.+.+|.|+.. +++++|+|+++||.++....+.. ....+.+...||+|+.+|..+.+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~~-----~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~ 91 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPAS-----DSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLN 91 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCcc-----cCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCC
Confidence 34566666654778899999999741 25678999999997654432222 22345667789999999975432
Q ss_pred ----------CCchh-HHHhhccCCCc-----ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcce
Q 004816 534 ----------GYGRE-FRERLLGRWGI-----VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFK 596 (729)
Q Consensus 534 ----------g~g~~-~~~~~~~~~~~-----~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~ 596 (729)
+++.. +.......|+. ...+++...++.... .+|.++++|+|+||||++|+.++. +|++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~ 169 (283)
T PLN02442 92 VEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYK 169 (283)
T ss_pred CCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEE
Confidence 11111 11111111211 113333333333322 368899999999999999999988 999999
Q ss_pred EEEEeccccChhHHhhhcchhhhhhhhhhcC-Chhhhhh---cCcccccCCCCCCEEEEEeCCCCCCChH-HHHHHHHHH
Q 004816 597 AGASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYE---KSPINFVDKFSCPIILFQGLEDKVVPPD-QARKIYKAL 671 (729)
Q Consensus 597 a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~sp~~~~~~i~~PvL~i~G~~D~~vp~~-~~~~~~~~l 671 (729)
++++.+|+.++..... ........++ ..+.+.+ .+++.++...++|+|++||++|.+++.. ++..+++++
T Consensus 170 ~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l 244 (283)
T PLN02442 170 SVSAFAPIANPINCPW-----GQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEAC 244 (283)
T ss_pred EEEEECCccCcccCch-----hhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHH
Confidence 9999999987542110 0111111222 2233333 4445556667899999999999999874 688999999
Q ss_pred HhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 672 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 672 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+++|.+++++++|+++|.+. .+..+++..+.|..++++
T Consensus 245 ~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 245 KEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred HHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 99999999999999999864 445555666666666654
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=195.65 Aligned_cols=231 Identities=16% Similarity=0.108 Sum_probs=157.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.++++.. +|..+.++++.|.. .++.|+||+.||. .+.....+...++.|+++||+|+++|+||.|...
T Consensus 167 ~~e~v~i~~~-~g~~l~g~l~~P~~-------~~~~P~Vli~gG~-~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~ 237 (414)
T PRK05077 167 ELKELEFPIP-GGGPITGFLHLPKG-------DGPFPTVLVCGGL-DSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSS 237 (414)
T ss_pred ceEEEEEEcC-CCcEEEEEEEECCC-------CCCccEEEEeCCc-ccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence 3678899887 77799999999864 3567888766554 3333344566788999999999999999865432
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-H---Hh
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-M---LR 611 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-~---~~ 611 (729)
.. ... ........+++++|...+.+|.+||+++|+|+||+++++++. +|++++++|+.+|+.+.. . ..
T Consensus 238 ~~---~~~----~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~ 310 (414)
T PRK05077 238 KW---KLT----QDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQ 310 (414)
T ss_pred CC---Ccc----ccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhh
Confidence 21 000 011222357889999988899999999999999999999997 888999999999876421 1 00
Q ss_pred hhcchhhhhhhhhhcC----Chhhh----hhcCcc--c-ccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEE
Q 004816 612 AETHKFESRYIDNLVG----SEKDY----YEKSPI--N-FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 680 (729)
Q Consensus 612 ~~~~~~~~~~~~~~~~----~~~~~----~~~sp~--~-~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 680 (729)
..........+...++ +.+.+ ...+.. . ...++++|+|+++|++|.++|+++++.+.+... +.++
T Consensus 311 ~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l 386 (414)
T PRK05077 311 QQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKL 386 (414)
T ss_pred hhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeE
Confidence 0000000011111111 11111 111111 1 125789999999999999999999997765543 4588
Q ss_pred EEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 681 VEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 681 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+++|+. |.+ +...+++..+.+||.++|
T Consensus 387 ~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 387 LEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred EEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 999986 433 356789999999999886
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-20 Score=193.71 Aligned_cols=243 Identities=18% Similarity=0.229 Sum_probs=163.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
+.+...+... ||.++++..+.|.+ .....|+||++||.... ..+.+...+..|+++||.|+++|+||.|.+.
T Consensus 31 ~~~~~~~~~~-dg~~l~~~~~~~~~------~~~~~~~VvllHG~~~~-~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~ 102 (330)
T PLN02298 31 KGSKSFFTSP-RGLSLFTRSWLPSS------SSPPRALIFMVHGYGND-ISWTFQSTAIFLAQMGFACFALDLEGHGRSE 102 (330)
T ss_pred ccccceEEcC-CCCEEEEEEEecCC------CCCCceEEEEEcCCCCC-cceehhHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 4455667776 99999998888754 12346899999998433 2344556677889999999999999876543
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh----
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR---- 611 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~---- 611 (729)
.. ......-....+|+.++++++......+..+++|+||||||.+++.++. +|++++++|+.+|........
T Consensus 103 ~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 179 (330)
T PLN02298 103 GL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPW 179 (330)
T ss_pred Cc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCch
Confidence 21 0000001123788999999998764445568999999999999998887 899999999999865422100
Q ss_pred --hhcchhhhhhhhh--------hcC----C--hhhhhhcCc----------------------ccccCCCCCCEEEEEe
Q 004816 612 --AETHKFESRYIDN--------LVG----S--EKDYYEKSP----------------------INFVDKFSCPIILFQG 653 (729)
Q Consensus 612 --~~~~~~~~~~~~~--------~~~----~--~~~~~~~sp----------------------~~~~~~i~~PvL~i~G 653 (729)
.....+...+... ... . ...+...+| ...+.++++|+|++||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G 259 (330)
T PLN02298 180 PIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHG 259 (330)
T ss_pred HHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEec
Confidence 0000000000000 000 0 000001111 1235678899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC--cc-cHHHHHHHHHHHHHHHhC
Q 004816 654 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AE-NIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 654 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~-~~~~~~~~~~~fl~~~l~ 712 (729)
++|.++|++.++++++.+... ..+++++++++|.+.. ++ ......+.+.+|+.++++
T Consensus 260 ~~D~ivp~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~ 319 (330)
T PLN02298 260 SADVVTDPDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCT 319 (330)
T ss_pred CCCCCCCHHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999988643 3589999999998643 32 345678889999999986
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=185.82 Aligned_cols=242 Identities=17% Similarity=0.190 Sum_probs=162.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHH-hhCCcEEEEecC--CCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNY--GGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l-a~~G~~v~~~d~--rGs~ 533 (729)
+.+..++.+...+..+.+.+|.|++.. .++.|+|+++||.+.....+.+....+.+ ++.||.|++||+ ||.+
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~-----~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~ 86 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAA-----AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTG 86 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCcc-----CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCC
Confidence 345566666546778889999997621 34679999999986544433333333444 456999999997 5544
Q ss_pred CCch--hHH---------HhhccCCC--cccHHHHHHHHHHHHh-CCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEE
Q 004816 534 GYGR--EFR---------ERLLGRWG--IVDVNDCCSCATFLVG-SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAG 598 (729)
Q Consensus 534 g~g~--~~~---------~~~~~~~~--~~~~~D~~~~~~~l~~-~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~ 598 (729)
..+. .|. +.....+. ......+...+..+++ ...+|.++++|+|+||||++++.++. +|+.|+++
T Consensus 87 ~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~ 166 (275)
T TIGR02821 87 IAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSV 166 (275)
T ss_pred CCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEE
Confidence 2221 111 00000111 0112233333333333 34578899999999999999999998 99999999
Q ss_pred EEeccccChhHHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCC--CCCCEEEEEeCCCCCCCh-HHHHHHHHHHHhC
Q 004816 599 ASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPP-DQARKIYKALKEN 674 (729)
Q Consensus 599 v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~--i~~PvL~i~G~~D~~vp~-~~~~~~~~~l~~~ 674 (729)
++.+|+.+.... .....++...++ +.+.+...+|...+.+ ..+|+|+.||++|..+|. .++..+.++|+++
T Consensus 167 ~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~ 241 (275)
T TIGR02821 167 SAFAPIVAPSRC-----PWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAA 241 (275)
T ss_pred EEECCccCcccC-----cchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHc
Confidence 999999775321 111112222222 2334445566554443 457999999999999999 6889999999999
Q ss_pred CCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 675 GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 675 g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
|++++++++||++|+|. .+...++..++|+.+++
T Consensus 242 g~~v~~~~~~g~~H~f~---~~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 242 GQALTLRRQAGYDHSYY---FIASFIADHLRHHAERL 275 (275)
T ss_pred CCCeEEEEeCCCCccch---hHHHhHHHHHHHHHhhC
Confidence 99999999999999984 45677888888887753
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=185.72 Aligned_cols=204 Identities=20% Similarity=0.287 Sum_probs=143.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCC-CchhH--HHhhccC--
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG-YGREF--RERLLGR-- 546 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g-~g~~~--~~~~~~~-- 546 (729)
+.+++..|.+ .++.|.||++|+..+.. ......++.|+++||.|++||+-+..+ ..... .......
T Consensus 1 ~~ay~~~P~~-------~~~~~~Vvv~~d~~G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~ 71 (218)
T PF01738_consen 1 IDAYVARPEG-------GGPRPAVVVIHDIFGLN--PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELF 71 (218)
T ss_dssp EEEEEEEETT-------SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCH
T ss_pred CeEEEEeCCC-------CCCCCEEEEEcCCCCCc--hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHH
Confidence 4678888876 35779999999974332 445568899999999999999765333 11111 1111111
Q ss_pred --CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchhhhhhhhh
Q 004816 547 --WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDN 624 (729)
Q Consensus 547 --~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 624 (729)
.......|+.+++++|.+++.++.+||+++|+|+||.+++.++...+.++++|+.+|.....
T Consensus 72 ~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~~~~~a~v~~yg~~~~~---------------- 135 (218)
T PF01738_consen 72 APRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARDPRVDAAVSFYGGSPPP---------------- 135 (218)
T ss_dssp HHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCTTTSSEEEEES-SSSGG----------------
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhccccceEEEEcCCCCCC----------------
Confidence 11123688889999999998788999999999999999999998557899999999911100
Q ss_pred hcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc-------ccHH
Q 004816 625 LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA-------ENIK 697 (729)
Q Consensus 625 ~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~-------~~~~ 697 (729)
.+.....++++|+|+++|++|+.++.+...++.+.|+++|+++++++|||++|+|..+ +...
T Consensus 136 -----------~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~ 204 (218)
T PF01738_consen 136 -----------PPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAE 204 (218)
T ss_dssp -----------GHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHH
T ss_pred -----------cchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHH
Confidence 1112345678999999999999999999999999999999999999999999999643 3456
Q ss_pred HHHHHHHHHHHHHh
Q 004816 698 FTLEQQMVFFARVV 711 (729)
Q Consensus 698 ~~~~~~~~fl~~~l 711 (729)
+.++++++||+++|
T Consensus 205 ~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 205 DAWQRTLAFFKRHL 218 (218)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcC
Confidence 88899999999876
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=188.74 Aligned_cols=238 Identities=14% Similarity=0.139 Sum_probs=169.6
Q ss_pred CCEEEEEECC-----CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 154 GDTVIFSNYK-----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 154 ~~~i~~~~~~-----~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
+++|+|+... +.+||++|.++ ...++|+.. ......++|||||++|+|++.... ..+||++|+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg--~~~~~lt~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~i~i~dl 235 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDG--FNQFIVNRS----SQPLMSPAWSPDGSKLAYVSFENK------KSQLVVHDL 235 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCC--CCceEeccC----CCccccceEcCCCCEEEEEEecCC------CcEEEEEeC
Confidence 4578787643 24899999987 677888876 345688999999999999876432 357999999
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
.+++.++++...+....++|||||++|+|..... ...+||++|++ +++. ..+. ... .....+.|+||
T Consensus 236 ~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~-~~~~--~~lt-~~~----~~~~~~~wSpD 302 (429)
T PRK01742 236 RSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD-----GVLNIYVMGAN-GGTP--SQLT-SGA----GNNTEPSWSPD 302 (429)
T ss_pred CCCceEEEecCCCccCceeECCCCCEEEEEEecC-----CcEEEEEEECC-CCCe--Eeec-cCC----CCcCCEEECCC
Confidence 9998888876555556799999999999987332 23579999987 6664 2333 232 34568999999
Q ss_pred Cc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
|+ |+|.+++ .+..+||.++..++..+.+. ... ..+.|++ +++.|++.+. ..++.+|+.+
T Consensus 303 G~~i~f~s~~-~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~Sp------------DG~~ia~~~~----~~i~~~Dl~~ 362 (429)
T PRK01742 303 GQSILFTSDR-SGSPQVYRMSASGGGASLVG-GRG--YSAQISA------------DGKTLVMING----DNVVKQDLTS 362 (429)
T ss_pred CCEEEEEECC-CCCceEEEEECCCCCeEEec-CCC--CCccCCC------------CCCEEEEEcC----CCEEEEECCC
Confidence 99 8998877 78889999998887776663 221 2456765 7888877654 3578889999
Q ss_pred CceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 388 HSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 388 g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
++.+.++.... ...+ ..++++.+++++.......++.++.++...++|+
T Consensus 363 g~~~~lt~~~~-~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 363 GSTEVLSSTFL-DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCeEEecCCCC-CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 98888875432 2222 3444555555555555556778787776665553
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=186.20 Aligned_cols=237 Identities=27% Similarity=0.419 Sum_probs=157.3
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
....++|.+. +|.+|.++++.|++ ..++.|+||.+||.+... ..+. ....++.+||+|+.+|.||.++..
T Consensus 55 ~vy~v~f~s~-~g~~V~g~l~~P~~------~~~~~Pavv~~hGyg~~~--~~~~-~~~~~a~~G~~vl~~d~rGqg~~~ 124 (320)
T PF05448_consen 55 EVYDVSFESF-DGSRVYGWLYRPKN------AKGKLPAVVQFHGYGGRS--GDPF-DLLPWAAAGYAVLAMDVRGQGGRS 124 (320)
T ss_dssp EEEEEEEEEG-GGEEEEEEEEEES-------SSSSEEEEEEE--TT--G--GGHH-HHHHHHHTT-EEEEE--TTTSSSS
T ss_pred EEEEEEEEcc-CCCEEEEEEEecCC------CCCCcCEEEEecCCCCCC--CCcc-cccccccCCeEEEEecCCCCCCCC
Confidence 4567889987 99999999999985 257889999999974432 1121 123578999999999999988544
Q ss_pred hhHHHhh----cc--CCCc----------ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEE
Q 004816 537 REFRERL----LG--RWGI----------VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 600 (729)
Q Consensus 537 ~~~~~~~----~~--~~~~----------~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~ 600 (729)
....... .+ ..|. ..+.|+..++++|.+.+.+|.+||++.|.|.||.+++.+++..++|+++++
T Consensus 125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~rv~~~~~ 204 (320)
T PF05448_consen 125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPRVKAAAA 204 (320)
T ss_dssp -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST-SEEEE
T ss_pred CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCccccEEEe
Confidence 3322110 00 0111 126899999999999999999999999999999999999995568999999
Q ss_pred eccc-cChhHHhhhcc---hh--hhhhhh---hhcCC----hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHH
Q 004816 601 LYGV-ADLSMLRAETH---KF--ESRYID---NLVGS----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKI 667 (729)
Q Consensus 601 ~~~~-~d~~~~~~~~~---~~--~~~~~~---~~~~~----~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~ 667 (729)
..|. .|+........ .+ ...|+. ..... .+.+...+..+.+++|++|+|+..|..|.+||+....+.
T Consensus 205 ~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~ 284 (320)
T PF05448_consen 205 DVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAA 284 (320)
T ss_dssp ESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHH
T ss_pred cCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHH
Confidence 9984 56654432211 11 112222 11111 133456788888999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 668 YKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 668 ~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
++.+.. +.++++||..+|.... ....++.++||.+|
T Consensus 285 yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 285 YNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp HCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred HhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 999975 5799999999996432 22267788999875
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-18 Score=185.27 Aligned_cols=244 Identities=17% Similarity=0.193 Sum_probs=175.9
Q ss_pred CCEEEEEECC----CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 154 GDTVIFSNYK----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 154 ~~~i~~~~~~----~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
+++++|.... ..+||++|.++ +..++|+.. ......++|||||++|+|+..... ..+||+++++
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~----~~~~~~p~~Spdg~~la~~~~~~~------~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSGKSRRYELQVADYDG--ANPQTITRS----REPILSPAWSPDGQKLAYVSFESG------KPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeCCCCcceEEEEcCCC--CCCEEeecC----CCceecccCCCCCCEEEEEEcCCC------CcEEEEEECC
Confidence 4567777644 23799999987 778888875 234578899999999999875432 2579999999
Q ss_pred CCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 230 GQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 230 ~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
+++.+.++...+....++|||||++|+|..... ...+||++++. ++.... +.. .. .....+.|+|||
T Consensus 223 ~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-----~~~~i~~~d~~-~~~~~~--l~~-~~----~~~~~~~~s~dg 289 (417)
T TIGR02800 223 TGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD-----GNPDIYVMDLD-GKQLTR--LTN-GP----GIDTEPSWSPDG 289 (417)
T ss_pred CCCEEEeecCCCCccceEECCCCCEEEEEECCC-----CCccEEEEECC-CCCEEE--CCC-CC----CCCCCEEECCCC
Confidence 998888876555556799999999999886322 24579999998 665422 222 22 223568999999
Q ss_pred c-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCC
Q 004816 310 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 388 (729)
Q Consensus 310 ~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g 388 (729)
+ |+|.+++ .+..+||++|+++++.+.++........+.|++ +++.++++....+..+|+.++++++
T Consensus 290 ~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp------------dg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 290 KSIAFTSDR-GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP------------DGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccCeEECC------------CCCEEEEEEccCCceEEEEEeCCCC
Confidence 9 8888877 677799999999998888875444445566765 7888888887777889999999998
Q ss_pred ceEeeccCCcceE-EeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 389 SLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 389 ~~~~lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
..+.++....... .++++++.+++... ......+|.++.+++..++|
T Consensus 357 ~~~~l~~~~~~~~p~~spdg~~l~~~~~-~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 357 GERVLTDTGLDESPSFAPNGRMILYATT-RGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CeEEccCCCCCCCceECCCCCEEEEEEe-CCCcEEEEEEECCCceeeEC
Confidence 8888876433222 23555555555554 44456788888766654433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-19 Score=184.76 Aligned_cols=241 Identities=15% Similarity=0.110 Sum_probs=158.2
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCC
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 535 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~ 535 (729)
...++..+... +|.++++..+.|.. ..|+||++||.. .....|...+..++++||.|+++|+||.|.+
T Consensus 28 ~~~~~~~~~~~-~g~~l~~~~~~~~~---------~~~~vll~HG~~--~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S 95 (330)
T PRK10749 28 RQREEAEFTGV-DDIPIRFVRFRAPH---------HDRVVVICPGRI--ESYVKYAELAYDLFHLGYDVLIIDHRGQGRS 95 (330)
T ss_pred hhccceEEEcC-CCCEEEEEEccCCC---------CCcEEEEECCcc--chHHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Confidence 34456666666 89999988887632 236899999973 3233466677788899999999999988765
Q ss_pred chhHHHhhccCCC--cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh----
Q 004816 536 GREFRERLLGRWG--IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---- 608 (729)
Q Consensus 536 g~~~~~~~~~~~~--~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~---- 608 (729)
+........+... ..-++|+.++++.+... .+..++.++||||||.+++.++. +|++++++|+.+|.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~ 173 (330)
T PRK10749 96 GRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLP 173 (330)
T ss_pred CCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCC
Confidence 4322110011100 11256677777766544 24578999999999999998887 999999999998864311
Q ss_pred H-H-------hhhcc-----------hh-------------hhh---hhhhhcCCh-------------hhhhh-cCccc
Q 004816 609 M-L-------RAETH-----------KF-------------ESR---YIDNLVGSE-------------KDYYE-KSPIN 639 (729)
Q Consensus 609 ~-~-------~~~~~-----------~~-------------~~~---~~~~~~~~~-------------~~~~~-~sp~~ 639 (729)
. . ..... .+ ... +......++ +.+.. .....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
T PRK10749 174 SWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLA 253 (330)
T ss_pred cHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHh
Confidence 0 0 00000 00 000 000000000 00000 01123
Q ss_pred ccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCC---CEEEEEECCCCcccCCcc--cHHHHHHHHHHHHHHH
Q 004816 640 FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGL---PVALVEYEGEQHGFRKAE--NIKFTLEQQMVFFARV 710 (729)
Q Consensus 640 ~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~gH~~~~~~--~~~~~~~~~~~fl~~~ 710 (729)
.+.++++|+|++||++|.+++++.+..+++.++.++. +++++++|+++|...... .....++.+++|++++
T Consensus 254 ~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 254 GAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred hccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 4577899999999999999999999999999987653 458999999999876433 3678889999999874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-18 Score=182.99 Aligned_cols=246 Identities=14% Similarity=0.105 Sum_probs=175.2
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~~ 176 (729)
+++++|+..+.+....+.||.++.++ +..+.++.... ......|+++++.|+|.+..+ .+||++|+.+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg-~~~~~lt~~~~-------~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t-- 237 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDG-FNQFIVNRSSQ-------PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS-- 237 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCC-CCceEeccCCC-------ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC--
Confidence 67888887655433456788888773 24555554321 112456888888999987544 3899999988
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
++.++++... .....++|||||++|+++....+ ..+||++|+++++.++|+.+......|.|||||++|+
T Consensus 238 g~~~~l~~~~----g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~ 307 (429)
T PRK01742 238 GARKVVASFR----GHNGAPAFSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSIL 307 (429)
T ss_pred CceEEEecCC----CccCceeECCCCCEEEEEEecCC------cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEE
Confidence 7777777542 22356899999999999875432 2579999999999999988776778899999999999
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
|.+ ++.+ ..+||.++.. ++.. ..+ ... . ..+.|||||+ |++... ..++++|+.+++.+
T Consensus 308 f~s-~~~g----~~~I~~~~~~-~~~~---~~l-~~~----~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 308 FTS-DRSG----SPQVYRMSAS-GGGA---SLV-GGR----G--YSAQISADGKTLVMING-----DNVVKQDLTSGSTE 366 (429)
T ss_pred EEE-CCCC----CceEEEEECC-CCCe---EEe-cCC----C--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeE
Confidence 987 3332 3579999876 4543 222 222 2 3578999999 777653 34788999999888
Q ss_pred EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc
Q 004816 336 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 336 ~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
.++.. .....+.|++ +++.|++.+.+.+...++.++.+++..+.|+....
T Consensus 367 ~lt~~-~~~~~~~~sP------------dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 367 VLSST-FLDESPSISP------------NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred EecCC-CCCCCceECC------------CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC
Confidence 77632 2334566776 88889888877666678888888888888865443
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=185.26 Aligned_cols=240 Identities=15% Similarity=0.152 Sum_probs=157.5
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+...+... +|.++.+..+.|.+ ++..|+||++||.+... ...+...+..|+++||.|+++|+||.|.+...
T Consensus 62 ~~~~~~~~-~g~~l~~~~~~p~~-------~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~ 132 (349)
T PLN02385 62 EESYEVNS-RGVEIFSKSWLPEN-------SRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGFGLSEGL 132 (349)
T ss_pred eeeeEEcC-CCCEEEEEEEecCC-------CCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCCCCCCCC
Confidence 33445555 89999999998864 34568999999974322 22345677888889999999999987654321
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH------H-
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM------L- 610 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~------~- 610 (729)
.. ....+ ...++|+.+.++.+..+...+..+++|+||||||.+++.++. +|++++++|+.+|...... .
T Consensus 133 ~~--~~~~~-~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~ 209 (349)
T PLN02385 133 HG--YIPSF-DDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLV 209 (349)
T ss_pred CC--CcCCH-HHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHH
Confidence 00 00011 112677777788776554445568999999999999999988 9999999999988643210 0
Q ss_pred ---h---hh-cch---h-hhhhhhhhcCCh-----------------------hhhhh-cCcccccCCCCCCEEEEEeCC
Q 004816 611 ---R---AE-THK---F-ESRYIDNLVGSE-----------------------KDYYE-KSPINFVDKFSCPIILFQGLE 655 (729)
Q Consensus 611 ---~---~~-~~~---~-~~~~~~~~~~~~-----------------------~~~~~-~sp~~~~~~i~~PvL~i~G~~ 655 (729)
. .. ... . ...+......+. +.+.. .+....+.++++|+|++||++
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~ 289 (349)
T PLN02385 210 LQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEA 289 (349)
T ss_pred HHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 0 00 000 0 000000000000 00110 011233667899999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC--ccc-HHHHHHHHHHHHHHHhC
Q 004816 656 DKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AEN-IKFTLEQQMVFFARVVG 712 (729)
Q Consensus 656 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~-~~~~~~~~~~fl~~~l~ 712 (729)
|.++|++.++++++.+... +.+++++|+++|.+.. ++. ....++.+++||++++.
T Consensus 290 D~vv~~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 290 DKVTDPSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CCccChHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 9999999999998887543 4589999999998753 222 44588999999999874
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-19 Score=168.88 Aligned_cols=238 Identities=16% Similarity=0.225 Sum_probs=169.3
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
.....+... +|..+....|.|.+ ..+.+.+|+++||. +....+.|...+..|+..||.|+++|++|.|++..
T Consensus 27 ~~~~~~~n~-rG~~lft~~W~p~~------~~~pr~lv~~~HG~-g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdG 98 (313)
T KOG1455|consen 27 YSESFFTNP-RGAKLFTQSWLPLS------GTEPRGLVFLCHGY-GEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDG 98 (313)
T ss_pred eeeeeEEcC-CCCEeEEEecccCC------CCCCceEEEEEcCC-cccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCC
Confidence 344445555 89999999999965 23566799999997 34445678888999999999999999998765431
Q ss_pred hHHHhhccCCC--cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh--
Q 004816 538 EFRERLLGRWG--IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA-- 612 (729)
Q Consensus 538 ~~~~~~~~~~~--~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~-- 612 (729)
. ..... ..-++|+...++.+..+..-.....+++||||||.+++.++. +|..+.++|+.+|..-+..-..
T Consensus 99 l-----~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~ 173 (313)
T KOG1455|consen 99 L-----HAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPH 173 (313)
T ss_pred C-----cccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCC
Confidence 1 11111 123788888888877775545568999999999999999998 9999999999988653221100
Q ss_pred ----h----cchhhhhh--------hhhhcCCh--hhhhhcCcc----------------------cccCCCCCCEEEEE
Q 004816 613 ----E----THKFESRY--------IDNLVGSE--KDYYEKSPI----------------------NFVDKFSCPIILFQ 652 (729)
Q Consensus 613 ----~----~~~~~~~~--------~~~~~~~~--~~~~~~sp~----------------------~~~~~i~~PvL~i~ 652 (729)
. ...+...+ ......++ ......+|+ ..+.++..|+|++|
T Consensus 174 p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilH 253 (313)
T KOG1455|consen 174 PPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILH 253 (313)
T ss_pred cHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEe
Confidence 0 00000000 00000011 111222332 23677889999999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC---CcccHHHHHHHHHHHHHHH
Q 004816 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR---KAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~~fl~~~ 710 (729)
|+.|.++.+..++++|+..... +.++..|||.-|.+. .+++....+..|++|++++
T Consensus 254 G~dD~VTDp~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 254 GTDDKVTDPKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cCCCcccCcHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 9999999999999999998876 448999999999975 5688889999999999875
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-19 Score=179.89 Aligned_cols=225 Identities=17% Similarity=0.209 Sum_probs=154.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
||.++.+.+|.|.. .+.|+|+++||.. .....|...++.|+++||.|+++|+||.|.+... ......+
T Consensus 9 ~g~~l~~~~~~~~~--------~~~~~v~llHG~~--~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~--~~~~~~~ 76 (276)
T PHA02857 9 DNDYIYCKYWKPIT--------YPKALVFISHGAG--EHSGRYEELAENISSLGILVFSHDHIGHGRSNGE--KMMIDDF 76 (276)
T ss_pred CCCEEEEEeccCCC--------CCCEEEEEeCCCc--cccchHHHHHHHHHhCCCEEEEccCCCCCCCCCc--cCCcCCH
Confidence 89999999998842 2348899999973 3456777889999999999999999987654321 0001111
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh--h-------h-c--
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR--A-------E-T-- 614 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~--~-------~-~-- 614 (729)
. ..++|+...++++.... ...+++++|||+||.+++.++. +|++++++|+.+|..+..... . . .
T Consensus 77 ~-~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 77 G-VYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred H-HHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 1 12677777777776542 3468999999999999999887 999999999999875432110 0 0 0
Q ss_pred ch----hhhh-----------hhhhhcC--C--hhhh-----hhc-CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHH
Q 004816 615 HK----FESR-----------YIDNLVG--S--EKDY-----YEK-SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYK 669 (729)
Q Consensus 615 ~~----~~~~-----------~~~~~~~--~--~~~~-----~~~-sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~ 669 (729)
.. +... +...... . ...+ ... .....+.++++|+|+++|++|.++|++.+.++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~ 233 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFMQ 233 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHHH
Confidence 00 0000 0000000 0 0000 000 0123466889999999999999999999999988
Q ss_pred HHHhCCCCEEEEEECCCCcccCCc--ccHHHHHHHHHHHHHHH
Q 004816 670 ALKENGLPVALVEYEGEQHGFRKA--ENIKFTLEQQMVFFARV 710 (729)
Q Consensus 670 ~l~~~g~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~fl~~~ 710 (729)
.+.. ++++++++++||.+... +..++.++.+++|++++
T Consensus 234 ~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 234 HANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 7743 46899999999987654 44788999999999986
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=168.69 Aligned_cols=215 Identities=21% Similarity=0.270 Sum_probs=167.9
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+.++++.. +..+.+++..|.. ....|+||++|+-.+. .......++.|+..||.|++||+-+..+....
T Consensus 3 ~~v~~~~~--~~~~~~~~a~P~~-------~~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~ 71 (236)
T COG0412 3 TDVTIPAP--DGELPAYLARPAG-------AGGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTD 71 (236)
T ss_pred cceEeeCC--CceEeEEEecCCc-------CCCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCc
Confidence 45677775 4899999999987 3344999999996433 34667789999999999999996542221111
Q ss_pred ------HHHhh-ccCCC-cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHH
Q 004816 539 ------FRERL-LGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML 610 (729)
Q Consensus 539 ------~~~~~-~~~~~-~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~ 610 (729)
..... ..... .....|+.++++||..++.++.+||+++|+|+||.+++.++...+.++++|+.+|..-...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~v~a~v~fyg~~~~~~- 150 (236)
T COG0412 72 IEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVKAAVAFYGGLIADD- 150 (236)
T ss_pred ccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCCccEEEEecCCCCCCc-
Confidence 11110 00111 3458999999999999988899999999999999999999996658999999998532110
Q ss_pred hhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 611 RAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
.....++++|+|+.+|+.|..+|......+.+.+.++++++++.+|+++.|+|
T Consensus 151 ---------------------------~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 151 ---------------------------TADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred ---------------------------ccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 01156889999999999999999999999999999999999999999999999
Q ss_pred CCcc----------cHHHHHHHHHHHHHHHhC
Q 004816 691 RKAE----------NIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 691 ~~~~----------~~~~~~~~~~~fl~~~l~ 712 (729)
.++. .....++++++||+++++
T Consensus 204 ~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 204 ANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 7542 245788999999999875
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-18 Score=176.71 Aligned_cols=230 Identities=17% Similarity=0.263 Sum_probs=161.5
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc-ccchhhhHHHhh-CCcEEEEecCCCCCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGY 535 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~la~-~G~~v~~~d~rGs~g~ 535 (729)
.+.+.++.. +| .+.+.+|.|.. ...|+||++|||++.... ..+......|+. .|+.|+.+|||.++++
T Consensus 57 ~~~~~i~~~-~g-~i~~~~y~P~~--------~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 57 TRAYMVPTP-YG-QVETRLYYPQP--------DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEEEecC-CC-ceEEEEECCCC--------CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 566777775 55 58899999853 235899999999765333 235556777777 5999999999987642
Q ss_pred chhHHHhhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh-C------CCcceEEEEecccc
Q 004816 536 GREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F------RDTFKAGASLYGVA 605 (729)
Q Consensus 536 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~------~~~~~a~v~~~~~~ 605 (729)
. + ....+|+.++++|+.++ ..+|++||+|+|+|+||.+++.++. . +.+++++++++|+.
T Consensus 127 ~----------~-p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~ 195 (318)
T PRK10162 127 R----------F-PQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY 195 (318)
T ss_pred C----------C-CCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence 1 1 12479999999999764 4578999999999999999988875 1 36789999999988
Q ss_pred ChhHHhhh---cc---hhh----hhhhhhhcCChhhhhhcCccccc--CCC---CCCEEEEEeCCCCCCChHHHHHHHHH
Q 004816 606 DLSMLRAE---TH---KFE----SRYIDNLVGSEKDYYEKSPINFV--DKF---SCPIILFQGLEDKVVPPDQARKIYKA 670 (729)
Q Consensus 606 d~~~~~~~---~~---~~~----~~~~~~~~~~~~~~~~~sp~~~~--~~i---~~PvL~i~G~~D~~vp~~~~~~~~~~ 670 (729)
++...... .. .+. ..+.....++.. ...+|.... ..+ -+|++|++|+.|... .+++.++++
T Consensus 196 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~--~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~ 271 (318)
T PRK10162 196 GLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDA--DRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQT 271 (318)
T ss_pred CCCCChhHHHhCCCccccCHHHHHHHHHHhCCCcc--ccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHH
Confidence 75321100 00 000 011111111111 012232111 222 379999999999886 589999999
Q ss_pred HHhCCCCEEEEEECCCCcccCCc----ccHHHHHHHHHHHHHHHhC
Q 004816 671 LKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 671 l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 712 (729)
|+++|+++++++++|..|+|... +...+.++.+.+||+++++
T Consensus 272 L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 272 LAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998532 3356788899999999875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=180.49 Aligned_cols=251 Identities=16% Similarity=0.257 Sum_probs=183.0
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~~ 176 (729)
+++++|+..+. ..++..||..+.+ ++..+.++...... ....|+++++.|+|..... .+||++++.+
T Consensus 155 ~~~~~~~~~~~-~~~~~~l~~~d~~-g~~~~~l~~~~~~~-------~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-- 223 (417)
T TIGR02800 155 STRIAYVSKSG-KSRRYELQVADYD-GANPQTITRSREPI-------LSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-- 223 (417)
T ss_pred CCEEEEEEEeC-CCCcceEEEEcCC-CCCCEEeecCCCce-------ecccCCCCCCEEEEEEcCCCCcEEEEEECCC--
Confidence 67888887654 3567788888776 33567776543111 1335777788899987554 4899999988
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
++.++++... .....++|||||++|+|+..... ..+||++++++++.++++........|.|+|||++|+
T Consensus 224 g~~~~~~~~~----~~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~ 293 (417)
T TIGR02800 224 GQREKVASFP----GMNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIA 293 (417)
T ss_pred CCEEEeecCC----CCccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEE
Confidence 7677776542 22356889999999998865432 2579999999998888887655556789999999999
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
|.+ ++.+ ..+||+++++ +++. ..+.... .....+.|+|||+ ++|.... .+..+|+.+|+.++..+
T Consensus 294 ~~s-~~~g----~~~iy~~d~~-~~~~--~~l~~~~-----~~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 294 FTS-DRGG----SPQIYMMDAD-GGEV--RRLTFRG-----GYNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDGGGER 359 (417)
T ss_pred EEE-CCCC----CceEEEEECC-CCCE--EEeecCC-----CCccCeEECCCCCEEEEEEcc-CCceEEEEEeCCCCCeE
Confidence 987 3332 3479999998 6664 2333222 3456789999999 7777766 56789999999988877
Q ss_pred EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCC
Q 004816 336 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 397 (729)
Q Consensus 336 ~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~ 397 (729)
.++... ....+.|++ +++.|++.+.+++...||+++.+++..+.++.+.
T Consensus 360 ~l~~~~-~~~~p~~sp------------dg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~ 408 (417)
T TIGR02800 360 VLTDTG-LDESPSFAP------------NGRMILYATTRGGRGVLGLVSTDGRFRARLPLGN 408 (417)
T ss_pred EccCCC-CCCCceECC------------CCCEEEEEEeCCCcEEEEEEECCCceeeECCCCC
Confidence 776432 334566765 8889999999888889999998887777777653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=180.99 Aligned_cols=237 Identities=13% Similarity=0.112 Sum_probs=161.2
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
....+... ++..+.+..|.|.. ++..|+||++||.... ...|...+..|+++||.|+++|+||.|.....
T Consensus 111 ~~~~~~~~-~~~~l~~~~~~p~~-------~~~~~~Vl~lHG~~~~--~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~ 180 (395)
T PLN02652 111 ATSLFYGA-RRNALFCRSWAPAA-------GEMRGILIIIHGLNEH--SGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL 180 (395)
T ss_pred EEEEEECC-CCCEEEEEEecCCC-------CCCceEEEEECCchHH--HHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence 45556666 88899999998854 3446899999997433 34466788899999999999999987664332
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCC---cceEEEEeccccChhHHh---h
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLYGVADLSMLR---A 612 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~---~~~a~v~~~~~~d~~~~~---~ 612 (729)
.. .........+|+.++++++..+. +..+++++||||||.+++.++.+|+ +++++|+.+|...+.... .
T Consensus 181 ~~---~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~~p~~~~~v~glVL~sP~l~~~~~~~~~~ 255 (395)
T PLN02652 181 HG---YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAASYPSIEDKLEGIVLTSPALRVKPAHPIVG 255 (395)
T ss_pred CC---CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHhccCcccccceEEEECcccccccchHHHH
Confidence 11 00001122678888999887652 2357999999999999998776664 899999999875432100 0
Q ss_pred h--------cchh--hh------------hhhhhhcCChhh-------------hhhc-CcccccCCCCCCEEEEEeCCC
Q 004816 613 E--------THKF--ES------------RYIDNLVGSEKD-------------YYEK-SPINFVDKFSCPIILFQGLED 656 (729)
Q Consensus 613 ~--------~~~~--~~------------~~~~~~~~~~~~-------------~~~~-sp~~~~~~i~~PvL~i~G~~D 656 (729)
. ...+ .. ........++.. +... .....+.++++|+|++||++|
T Consensus 256 ~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D 335 (395)
T PLN02652 256 AVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTAD 335 (395)
T ss_pred HHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCC
Confidence 0 0000 00 000000000000 0000 011335678999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 657 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 657 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.++|++++.++++.+... ..+++++++++|.........++++.+.+|+..++.
T Consensus 336 ~vvp~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 336 RVTDPLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCCHHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999987543 458889999999976666788999999999999886
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=186.64 Aligned_cols=207 Identities=19% Similarity=0.237 Sum_probs=154.7
Q ss_pred hhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC--CCC------------CCcEEEEEc
Q 004816 513 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG--KAD------------EKRLCITGG 578 (729)
Q Consensus 513 ~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~d------------~~ri~i~G~ 578 (729)
+.++|+.+||+|+.+|.||.++++..+. .++..+.+|..++|+||..+. +.| ..||+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~-----~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPT-----TGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCc-----cCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 5588999999999999999887655432 234567899999999998532 112 479999999
Q ss_pred ChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcch------h-------hhh------------------h---hh
Q 004816 579 SAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHK------F-------ESR------------------Y---ID 623 (729)
Q Consensus 579 S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~------~-------~~~------------------~---~~ 623 (729)
||||++++.+|+ .|+.++++|..+++.++..++..... + ... + +.
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999998887 88999999999999887654322100 0 000 0 00
Q ss_pred hhc-------C-ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCccc
Q 004816 624 NLV-------G-SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695 (729)
Q Consensus 624 ~~~-------~-~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~ 695 (729)
.+. + ..+.|...+++.++++|++|+|++||.+|..+++.++.+++++|++++++.++++.++ +|.......
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~ 504 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQ 504 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchh
Confidence 000 0 1123456678888999999999999999999999999999999999998988877765 686555455
Q ss_pred HHHHHHHHHHHHHHHhCCCCCC-CCCCceec
Q 004816 696 IKFTLEQQMVFFARVVGHFDVA-DEIIPIKI 725 (729)
Q Consensus 696 ~~~~~~~~~~fl~~~l~~~~~~-~~~~~~~~ 725 (729)
..++.+.+.+||+++|++..+. ...+++.+
T Consensus 505 ~~d~~e~~~~Wfd~~LkG~~ng~~~~~pv~i 535 (767)
T PRK05371 505 SIDFRDTMNAWFTHKLLGIDNGVENELPAVI 535 (767)
T ss_pred HHHHHHHHHHHHHhccccCCCCcccCCcceE
Confidence 6678899999999999876554 22345544
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=156.21 Aligned_cols=203 Identities=19% Similarity=0.258 Sum_probs=153.0
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
-.|+++||..++ ......+.++|.++||.|.+|+|+|.|--+..+......+| .+|+.++.++|.+.++ +.
T Consensus 16 ~AVLllHGFTGt--~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~e 86 (243)
T COG1647 16 RAVLLLHGFTGT--PRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DE 86 (243)
T ss_pred EEEEEEeccCCC--cHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---Ce
Confidence 689999998443 34567788999999999999999998877777777777777 7899999999998865 68
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhh--hhhhhhcC-C----hhhhhhc---------
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFES--RYIDNLVG-S----EKDYYEK--------- 635 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~--~~~~~~~~-~----~~~~~~~--------- 635 (729)
|.+.|.||||.+|+.++. +| .+++|..++.........-...+.. +......+ + .+.++..
T Consensus 87 I~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~~~~~~ 164 (243)
T COG1647 87 IAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTPMTTTA 164 (243)
T ss_pred EEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcchHHHHH
Confidence 999999999999999998 66 7888888776542211100000000 00000000 0 0111111
Q ss_pred -------CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 636 -------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 636 -------sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.....++.|..|+|+++|.+|..||.+.+..+++.+... +.++.+|++.||.+..........+.++.||+
T Consensus 165 ~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~ 242 (243)
T COG1647 165 QLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESD--DKELKWLEGSGHVITLDKERDQVEEDVITFLE 242 (243)
T ss_pred HHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccCC--cceeEEEccCCceeecchhHHHHHHHHHHHhh
Confidence 123347789999999999999999999999999998764 55999999999999998899999999999996
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-17 Score=172.37 Aligned_cols=239 Identities=16% Similarity=0.232 Sum_probs=172.0
Q ss_pred CCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC---CcEEEEeCCCCCCCCeecCCC
Q 004816 109 PTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD---QRLYKHSIDSKDSSPLPITPD 185 (729)
Q Consensus 109 ~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~d~~~~~~~~~~lt~~ 185 (729)
+.....+.|+..+.+ +-..+.++....... -..|++++..+.|..... .++|++++++ +...++...
T Consensus 167 ~~~~~~~~l~~~D~d-g~~~~~l~~~~~~~~-------~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--g~~~~i~~~ 236 (425)
T COG0823 167 DGGPLPYELALGDYD-GYNQQKLTDSGSLIL-------TPAWSPDGKKLAYVSFELGGCPRIYYLDLNT--GKRPVILNF 236 (425)
T ss_pred ccCCCCceEEEEccC-CcceeEecccCccee-------ccccCcCCCceEEEEEecCCCceEEEEeccC--Cccceeecc
Confidence 344566677777766 223444444332111 234666777777765443 3699999998 666666554
Q ss_pred CCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCC
Q 004816 186 YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 265 (729)
Q Consensus 186 ~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~ 265 (729)
......|+|||||++|+|+...+. ..+||++|+.++..++|+.+.+....|.|||||++|+|++ ++.+.
T Consensus 237 ----~g~~~~P~fspDG~~l~f~~~rdg------~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~ 305 (425)
T COG0823 237 ----NGNNGAPAFSPDGSKLAFSSSRDG------SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTS-DRGGR 305 (425)
T ss_pred ----CCccCCccCCCCCCEEEEEECCCC------CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEe-CCCCC
Confidence 234478999999999999988763 4689999999999889999888888999999999999998 66653
Q ss_pred CCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCe-EEEeeccCcc
Q 004816 266 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAE 343 (729)
Q Consensus 266 ~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~ 343 (729)
.+||+++++ ++.. .+++... .....|.|||||+ ++|.... .|.+.+...++.++. .+.++ ....
T Consensus 306 ----p~I~~~~~~-g~~~--~riT~~~-----~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~~~~~lt-~~~~ 371 (425)
T COG0823 306 ----PQIYLYDLE-GSQV--TRLTFSG-----GGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGGKIRILT-STYL 371 (425)
T ss_pred ----cceEEECCC-CCce--eEeeccC-----CCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCCcEEEcc-cccc
Confidence 489999998 5554 3333333 2224899999999 8888854 677889999987776 55554 3334
Q ss_pred ccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec
Q 004816 344 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 344 ~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
...|.|.+ +++.+++.+...+...|+.++..+...+.+.
T Consensus 372 ~e~ps~~~------------ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 372 NESPSWAP------------NGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred CCCCCcCC------------CCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 45788886 7888888888778889999888766655443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-17 Score=172.44 Aligned_cols=230 Identities=16% Similarity=0.221 Sum_probs=172.3
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
.+|++.|-++ ...+.++.. ......+.|+|||+.++|+.-..... .++|++++++++..++..-.+...
T Consensus 173 ~~l~~~D~dg--~~~~~l~~~----~~~~~~p~ws~~~~~~~y~~f~~~~~-----~~i~~~~l~~g~~~~i~~~~g~~~ 241 (425)
T COG0823 173 YELALGDYDG--YNQQKLTDS----GSLILTPAWSPDGKKLAYVSFELGGC-----PRIYYLDLNTGKRPVILNFNGNNG 241 (425)
T ss_pred ceEEEEccCC--cceeEeccc----CcceeccccCcCCCceEEEEEecCCC-----ceEEEEeccCCccceeeccCCccC
Confidence 4899999886 667777765 45667899999999999996655432 579999999998888777666677
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN 323 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~ 323 (729)
.|+|||||++|+|..... ...+||++|+. ++.. .++.... .....|.|+|||+ |+|.+++ .|..+
T Consensus 242 ~P~fspDG~~l~f~~~rd-----g~~~iy~~dl~-~~~~--~~Lt~~~-----gi~~~Ps~spdG~~ivf~Sdr-~G~p~ 307 (425)
T COG0823 242 APAFSPDGSKLAFSSSRD-----GSPDIYLMDLD-GKNL--PRLTNGF-----GINTSPSWSPDGSKIVFTSDR-GGRPQ 307 (425)
T ss_pred CccCCCCCCEEEEEECCC-----CCccEEEEcCC-CCcc--eecccCC-----ccccCccCCCCCCEEEEEeCC-CCCcc
Confidence 899999999999998443 35789999998 5553 2233333 3335899999999 9999999 89999
Q ss_pred EEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcce-E
Q 004816 324 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDI-D 401 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v-~ 401 (729)
||+++++++..++++........|.|++ |+++|++.+...|...+...++.++. ++.++.....- .
T Consensus 308 I~~~~~~g~~~~riT~~~~~~~~p~~Sp------------dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~p 375 (425)
T COG0823 308 IYLYDLEGSQVTRLTFSGGGNSNPVWSP------------DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESP 375 (425)
T ss_pred eEEECCCCCceeEeeccCCCCcCccCCC------------CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCC
Confidence 9999999999999996555555889987 88889888866677889988887777 77776654332 2
Q ss_pred EeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 402 NITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.+..++..++++.... ....++.+++.+..
T Consensus 376 s~~~ng~~i~~~s~~~-~~~~l~~~s~~g~~ 405 (425)
T COG0823 376 SWAPNGRMIMFSSGQG-GGSVLSLVSLDGRV 405 (425)
T ss_pred CcCCCCceEEEeccCC-CCceEEEeecccee
Confidence 2244455555544443 55667777655443
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=157.78 Aligned_cols=220 Identities=20% Similarity=0.224 Sum_probs=159.7
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGY 535 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~ 535 (729)
..+.+..++. .|..+.+..+.|.. ...++|++.||. ...-.........+.. .+++|+.+||+|.|.+
T Consensus 34 ~v~v~~~~t~-rgn~~~~~y~~~~~--------~~~~~lly~hGN--a~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S 102 (258)
T KOG1552|consen 34 FVEVFKVKTS-RGNEIVCMYVRPPE--------AAHPTLLYSHGN--AADLGQMVELFKELSIFLNCNVVSYDYSGYGRS 102 (258)
T ss_pred ccceEEeecC-CCCEEEEEEEcCcc--------ccceEEEEcCCc--ccchHHHHHHHHHHhhcccceEEEEeccccccc
Confidence 4466667776 88888888888854 245899999996 2211111112222333 4899999999987765
Q ss_pred chhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcc
Q 004816 536 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETH 615 (729)
Q Consensus 536 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~ 615 (729)
+....+. ..++|+.++.+||.+... ..++|+++|+|+|...++.+|...+ .+++|+.+|+.+..+......
T Consensus 103 ~G~psE~-------n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~-~~alVL~SPf~S~~rv~~~~~ 173 (258)
T KOG1552|consen 103 SGKPSER-------NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP-LAAVVLHSPFTSGMRVAFPDT 173 (258)
T ss_pred CCCcccc-------cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC-cceEEEeccchhhhhhhccCc
Confidence 4443221 348999999999999976 7799999999999999999998433 999999999998776544311
Q ss_pred hhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCccc
Q 004816 616 KFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695 (729)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~ 695 (729)
... . .+..+.-+..++.|++|+|++||++|.++|..++.+++++.++ +++-.+..|+||... +.
T Consensus 174 ~~~-~----------~~d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~---~~epl~v~g~gH~~~--~~ 237 (258)
T KOG1552|consen 174 KTT-Y----------CFDAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKE---KVEPLWVKGAGHNDI--EL 237 (258)
T ss_pred ceE-E----------eeccccccCcceeccCCEEEEecccCceecccccHHHHHhccc---cCCCcEEecCCCccc--cc
Confidence 100 0 1112222667888899999999999999999999999999986 578888899999743 33
Q ss_pred HHHHHHHHHHHHHHHhC
Q 004816 696 IKFTLEQQMVFFARVVG 712 (729)
Q Consensus 696 ~~~~~~~~~~fl~~~l~ 712 (729)
-.++++.+..|+....+
T Consensus 238 ~~~yi~~l~~f~~~~~~ 254 (258)
T KOG1552|consen 238 YPEYIEHLRRFISSVLP 254 (258)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 34677777777766554
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=149.27 Aligned_cols=231 Identities=19% Similarity=0.205 Sum_probs=168.4
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhh-HHHhhCCcEEEEecCCCCC
Q 004816 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSI-QYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 455 ~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~-~~la~~G~~v~~~d~rGs~ 533 (729)
-..-+.+++.++ |..++++|+... ....|+++++|+..++. ..+-+.+ -++...+.+|+.++|||-|
T Consensus 51 n~pye~i~l~T~-D~vtL~a~~~~~---------E~S~pTlLyfh~NAGNm--Ghr~~i~~~fy~~l~mnv~ivsYRGYG 118 (300)
T KOG4391|consen 51 NMPYERIELRTR-DKVTLDAYLMLS---------ESSRPTLLYFHANAGNM--GHRLPIARVFYVNLKMNVLIVSYRGYG 118 (300)
T ss_pred CCCceEEEEEcC-cceeEeeeeecc---------cCCCceEEEEccCCCcc--cchhhHHHHHHHHcCceEEEEEeeccc
Confidence 345688999998 999999999873 23679999999974333 2222233 3456779999999999754
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA 612 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~ 612 (729)
.+..+..+. .-.-|..++++||..++..|..|+++.|.|.||..|+.+++ ..+++.|+++.+-+.++..+.-
T Consensus 119 ~S~GspsE~-------GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i 191 (300)
T KOG4391|consen 119 KSEGSPSEE-------GLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAI 191 (300)
T ss_pred cCCCCcccc-------ceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhh
Confidence 432221111 12578999999999999999999999999999999999988 7889999999998888744332
Q ss_pred -hcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC
Q 004816 613 -ETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691 (729)
Q Consensus 613 -~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 691 (729)
....+...|+..+. .+..| .....+...+.|.|++.|..|.+|||.++.++++......+ ++.+||++.|+-.
T Consensus 192 ~~v~p~~~k~i~~lc-~kn~~---~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~K--rl~eFP~gtHNDT 265 (300)
T KOG4391|consen 192 PLVFPFPMKYIPLLC-YKNKW---LSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSRTK--RLAEFPDGTHNDT 265 (300)
T ss_pred heeccchhhHHHHHH-HHhhh---cchhhhccccCceEEeecCccccCCcHHHHHHHHhCchhhh--hheeCCCCccCce
Confidence 22222333333221 01122 22334557789999999999999999999999999877644 8999999999732
Q ss_pred CcccHHHHHHHHHHHHHHHhC
Q 004816 692 KAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 692 ~~~~~~~~~~~~~~fl~~~l~ 712 (729)
. -..-.++.+.+|+.+...
T Consensus 266 ~--i~dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 266 W--ICDGYFQAIEDFLAEVVK 284 (300)
T ss_pred E--EeccHHHHHHHHHHHhcc
Confidence 2 123678889999999876
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=157.19 Aligned_cols=235 Identities=21% Similarity=0.285 Sum_probs=162.7
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
-.++|.+. +|.+|.+|+..|.. ..++.|+||..||..++...+ . ..-.|+..||+|+..|.||.+++..+
T Consensus 57 ydvTf~g~-~g~rI~gwlvlP~~------~~~~~P~vV~fhGY~g~~g~~--~-~~l~wa~~Gyavf~MdvRGQg~~~~d 126 (321)
T COG3458 57 YDVTFTGY-GGARIKGWLVLPRH------EKGKLPAVVQFHGYGGRGGEW--H-DMLHWAVAGYAVFVMDVRGQGSSSQD 126 (321)
T ss_pred EEEEEecc-CCceEEEEEEeecc------cCCccceEEEEeeccCCCCCc--c-ccccccccceeEEEEecccCCCcccc
Confidence 45777786 99999999999987 347899999999974443222 1 22356889999999999998876331
Q ss_pred HHHhhcc-------CCC----------cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEe
Q 004816 539 FRERLLG-------RWG----------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASL 601 (729)
Q Consensus 539 ~~~~~~~-------~~~----------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~ 601 (729)
-.....+ ..| ...+.|+..+++-+.+...+|.+||++.|.|.||.+++.++...++++++++.
T Consensus 127 t~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~rik~~~~~ 206 (321)
T COG3458 127 TADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKAVVAD 206 (321)
T ss_pred CCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcChhhhccccc
Confidence 1110000 001 12388999999999999999999999999999999999999977799999999
Q ss_pred ccccC-hhHHhhh--cchhhh--hhhhhhcC-Ch---hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHH
Q 004816 602 YGVAD-LSMLRAE--THKFES--RYIDNLVG-SE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 672 (729)
Q Consensus 602 ~~~~d-~~~~~~~--~~~~~~--~~~~~~~~-~~---~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~ 672 (729)
+|+.. ....... ...+.+ .|....-. .. +.+...+-.+.+.+++.|+|+..|.-|++|||....+++++|.
T Consensus 207 ~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~ 286 (321)
T COG3458 207 YPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALT 286 (321)
T ss_pred ccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhccc
Confidence 99753 2221110 111110 11111100 11 2233345566788999999999999999999999999999997
Q ss_pred hCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 673 ENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 673 ~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
. +.++.+||.-+|.-. +. ...+.+..|+...
T Consensus 287 ~---~K~i~iy~~~aHe~~-p~---~~~~~~~~~l~~l 317 (321)
T COG3458 287 T---SKTIEIYPYFAHEGG-PG---FQSRQQVHFLKIL 317 (321)
T ss_pred C---CceEEEeeccccccC-cc---hhHHHHHHHHHhh
Confidence 5 447888887778522 22 2223456666554
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-17 Score=159.83 Aligned_cols=185 Identities=18% Similarity=0.093 Sum_probs=130.8
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCC----CCchhHHHhhccCCCcc-------cHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST----GYGREFRERLLGRWGIV-------DVNDCCS 557 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~----g~g~~~~~~~~~~~~~~-------~~~D~~~ 557 (729)
.+..|+||++||.+.+ ...+...+..|...++.+..+.++|.. +.|+.|.... ...... ..+.+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHH
Confidence 3456899999997433 345667788888877666666666532 2234443211 100111 1233455
Q ss_pred HHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcC
Q 004816 558 CATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKS 636 (729)
Q Consensus 558 ~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 636 (729)
.++++.++..++.+||+++|+|+||.+++.++. +|+.+.++++.++.... . +
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~-----------------~---~------- 142 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS-----------------L---P------- 142 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc-----------------c---c-------
Confidence 667777777788899999999999999999887 88888888877663210 0 0
Q ss_pred cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 637 PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 637 p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
.....++|+|++||++|.+||++.+.++++.|++.|.++++++||+++|.+.. +.++.+.+||.+.+
T Consensus 143 ---~~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~-----~~~~~~~~~l~~~l 209 (232)
T PRK11460 143 ---ETAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDP-----RLMQFALDRLRYTV 209 (232)
T ss_pred ---ccccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH-----HHHHHHHHHHHHHc
Confidence 01123689999999999999999999999999999999999999999999853 45556666666665
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-17 Score=165.23 Aligned_cols=235 Identities=17% Similarity=0.222 Sum_probs=159.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
.+..+... ||..+.+..+.+.. .+..+||++||. ......|...+..|..+||.|+++|.||.|.+.+
T Consensus 10 ~~~~~~~~-d~~~~~~~~~~~~~--------~~~g~Vvl~HG~--~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r- 77 (298)
T COG2267 10 TEGYFTGA-DGTRLRYRTWAAPE--------PPKGVVVLVHGL--GEHSGRYEELADDLAARGFDVYALDLRGHGRSPR- 77 (298)
T ss_pred ccceeecC-CCceEEEEeecCCC--------CCCcEEEEecCc--hHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCC-
Confidence 44556665 89999999998754 122799999998 5555667778999999999999999998877653
Q ss_pred HHHhhccCCC--cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH--Hhhh
Q 004816 539 FRERLLGRWG--IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--LRAE 613 (729)
Q Consensus 539 ~~~~~~~~~~--~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~--~~~~ 613 (729)
...+... ..-..|+...++.+... .-..+++++||||||.+++.++. ++..++++|+.+|...+.. ....
T Consensus 78 ---~~rg~~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~ 152 (298)
T COG2267 78 ---GQRGHVDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLI 152 (298)
T ss_pred ---CCcCCchhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHH
Confidence 1111111 11145555555555543 12478999999999999999998 8899999999999877662 1000
Q ss_pred -c-------chhhhhh-hh-----hhc-----CChhh--hhhcCcc-----------------------cccCCCCCCEE
Q 004816 614 -T-------HKFESRY-ID-----NLV-----GSEKD--YYEKSPI-----------------------NFVDKFSCPII 649 (729)
Q Consensus 614 -~-------~~~~~~~-~~-----~~~-----~~~~~--~~~~sp~-----------------------~~~~~i~~PvL 649 (729)
. ..+...+ .. ... .+++. ....+|. ....++++|+|
T Consensus 153 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvL 232 (298)
T COG2267 153 LARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVL 232 (298)
T ss_pred HHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEE
Confidence 0 0000000 00 000 01100 0111221 12456789999
Q ss_pred EEEeCCCCCCC-hHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccH--HHHHHHHHHHHHHHhC
Q 004816 650 LFQGLEDKVVP-PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENI--KFTLEQQMVFFARVVG 712 (729)
Q Consensus 650 ~i~G~~D~~vp-~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~--~~~~~~~~~fl~~~l~ 712 (729)
+++|++|.+++ .+...++++.+... ++++++++|+.|...+.... .++++.+.+|+.+++.
T Consensus 233 ll~g~~D~vv~~~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 233 LLQGGDDRVVDNVEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred EEecCCCccccCcHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 99999999999 67666666665543 36999999999998777666 8999999999998875
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-16 Score=174.41 Aligned_cols=246 Identities=17% Similarity=0.158 Sum_probs=159.1
Q ss_pred eccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc--cccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH
Q 004816 464 PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541 (729)
Q Consensus 464 ~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~--~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~ 541 (729)
+.. ||.+|.+.++.|.+ .++.|+||++||...... ........+.|+++||.|+.+|+||.++++..+..
T Consensus 2 ~~~-DG~~L~~~~~~P~~-------~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~ 73 (550)
T TIGR00976 2 PMR-DGTRLAIDVYRPAG-------GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDL 73 (550)
T ss_pred cCC-CCCEEEEEEEecCC-------CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEe
Confidence 345 89999999999975 346899999998643221 01112245789999999999999998776544321
Q ss_pred hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhh-
Q 004816 542 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFES- 619 (729)
Q Consensus 542 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~- 619 (729)
++....+|+.++++|+.+++..+ .||+++|+||||++++.++. +|+.++++|+.++..++.........+..
T Consensus 74 -----~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~~g~~~~~ 147 (550)
T TIGR00976 74 -----LGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAFPGALRLD 147 (550)
T ss_pred -----cCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhccCCeeccc
Confidence 12356899999999999997766 69999999999999999988 88999999999888775432100000000
Q ss_pred ---hhhh----------------------hhcC---Ch-------------------------------hhhhhcCcccc
Q 004816 620 ---RYID----------------------NLVG---SE-------------------------------KDYYEKSPINF 640 (729)
Q Consensus 620 ---~~~~----------------------~~~~---~~-------------------------------~~~~~~sp~~~ 640 (729)
.+.. .... .. +.+...+....
T Consensus 148 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 227 (550)
T TIGR00976 148 VLLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWVSISLWRD 227 (550)
T ss_pred hhHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhccCchhhH
Confidence 0000 0000 00 00111222335
Q ss_pred cCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC---------CcccHH-HHHHHHHHHHHHH
Q 004816 641 VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR---------KAENIK-FTLEQQMVFFARV 710 (729)
Q Consensus 641 ~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~---------~~~~~~-~~~~~~~~fl~~~ 710 (729)
++++++|+|++.|-.|. ....+.+.++.+.+.+ +..+++-|. .|... ...... .....+++||+.+
T Consensus 228 ~~~i~vP~l~~~gw~D~--~~~g~~~~~~~~~~~~-~~~lilGpw-~H~~~~~~~~~~~~g~~~~~~~~~~~~~~wfD~~ 303 (550)
T TIGR00976 228 LGGSDVPTLVTGGWYDN--HSRGSIRLFLAVHRGG-AQRLVVGPW-THSGLGGRVGDGNYGMAALSWVDEAEQLAFFDRH 303 (550)
T ss_pred hcCCCCCEEEeCcccCC--CCchHHHHHHHHhhcC-CceEEEccC-CCCCcccccCCCccCccccccchhhhhHHHHHHH
Confidence 66899999999999994 4456777777877654 556765554 57511 001000 1111468999999
Q ss_pred hCCCCCC-CCCCceeccC
Q 004816 711 VGHFDVA-DEIIPIKIDN 727 (729)
Q Consensus 711 l~~~~~~-~~~~~~~~~~ 727 (729)
|++..+. ...+++.+..
T Consensus 304 Lkg~~~g~~~~p~v~~~~ 321 (550)
T TIGR00976 304 LKGGTTGVRSEPKVRLFT 321 (550)
T ss_pred hCCCCCCCCCCCceEEEe
Confidence 9976543 3445666543
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-16 Score=162.42 Aligned_cols=235 Identities=14% Similarity=0.110 Sum_probs=146.5
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~ 540 (729)
..+... ||..+......... .....|+||++||.+++.........+..|.++||.|+++|+||.++......
T Consensus 34 ~~~~~~-dg~~~~l~w~~~~~------~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~ 106 (324)
T PRK10985 34 QRLELP-DGDFVDLAWSEDPA------QARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLH 106 (324)
T ss_pred eEEECC-CCCEEEEecCCCCc------cCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCc
Confidence 345565 88776544322211 13456899999998655433334557788999999999999999765432111
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEEeccccChhHHhhhc---
Q 004816 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYGVADLSMLRAET--- 614 (729)
Q Consensus 541 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~--~~~a~v~~~~~~d~~~~~~~~--- 614 (729)
. .+.....+|+..+++++.++. ...++.++|||+||.+++.++. +++ .++++|++++..++.......
T Consensus 107 ~----~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~ 180 (324)
T PRK10985 107 R----IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQG 180 (324)
T ss_pred c----eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhh
Confidence 1 011124799999999998863 3468999999999998777766 443 388888888876643211000
Q ss_pred -----c-----hhhhhh---hhh-----------h------------c-----C--C-hhhhhhcCcccccCCCCCCEEE
Q 004816 615 -----H-----KFESRY---IDN-----------L------------V-----G--S-EKDYYEKSPINFVDKFSCPIIL 650 (729)
Q Consensus 615 -----~-----~~~~~~---~~~-----------~------------~-----~--~-~~~~~~~sp~~~~~~i~~PvL~ 650 (729)
. ...... ... . . + . .+.|...++...++++++|+|+
T Consensus 181 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~~P~li 260 (324)
T PRK10985 181 FSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIRKPTLI 260 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCCCCEEE
Confidence 0 000000 000 0 0 0 0 1233344555667889999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc----ccHHHHHHHHHHHHHHHhC
Q 004816 651 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 651 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 712 (729)
++|++|++++++....+.+ ....+++++++++||...-. ....-.-+.+.+||+..+.
T Consensus 261 i~g~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 322 (324)
T PRK10985 261 IHAKDDPFMTHEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYLE 322 (324)
T ss_pred EecCCCCCCChhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhhc
Confidence 9999999998866655432 22367889999999963211 1112344567888877653
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=156.52 Aligned_cols=189 Identities=17% Similarity=0.135 Sum_probs=123.3
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-hhhHHHhhCCcEEEEecCCCCCCCchhH--HHhhccCCCcc
Q 004816 474 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREF--RERLLGRWGIV 550 (729)
Q Consensus 474 ~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~~~la~~G~~v~~~d~rGs~g~g~~~--~~~~~~~~~~~ 550 (729)
+++|.|++. .+++|+||++||+++........ .+.+.+.+.||.|++||++|+++.+..| ........+..
T Consensus 1 ~~ly~P~~~------~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~ 74 (212)
T TIGR01840 1 MYVYVPAGL------TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTG 74 (212)
T ss_pred CEEEcCCCC------CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCc
Confidence 367888762 45789999999986543322111 2344455679999999999876543322 11111122334
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH--HhhhcchhhhhhhhhhcC
Q 004816 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--LRAETHKFESRYIDNLVG 627 (729)
Q Consensus 551 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~--~~~~~~~~~~~~~~~~~~ 627 (729)
+..|+..+++++.++..+|++||+|+|+|+||++++.++. +|++|+++++.++...... .......+ ....
T Consensus 75 ~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~ 148 (212)
T TIGR01840 75 EVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQM------CTAA 148 (212)
T ss_pred cHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhc------CCCC
Confidence 6788999999999988899999999999999999999987 9999999999887642110 00000000 0000
Q ss_pred Chhhhhhc-Cc-ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC
Q 004816 628 SEKDYYEK-SP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 674 (729)
Q Consensus 628 ~~~~~~~~-sp-~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~ 674 (729)
....+.+. .. .........|++++||++|.+||++.+++++++|++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 149 TAASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred CHHHHHHHHhccCCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 01111100 00 0112233456789999999999999999999999985
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=160.76 Aligned_cols=275 Identities=15% Similarity=0.151 Sum_probs=184.8
Q ss_pred EEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCC------
Q 004816 116 VLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEP------ 189 (729)
Q Consensus 116 ~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~------ 189 (729)
.+|.++.. +++.+.+.... ....-..|+++++.++|+. +++||+.++.+ +..++||.+....
T Consensus 24 ~y~i~d~~-~~~~~~l~~~~-------~~~~~~~~sP~g~~~~~v~--~~nly~~~~~~--~~~~~lT~dg~~~i~nG~~ 91 (353)
T PF00930_consen 24 DYYIYDIE-TGEITPLTPPP-------PKLQDAKWSPDGKYIAFVR--DNNLYLRDLAT--GQETQLTTDGEPGIYNGVP 91 (353)
T ss_dssp EEEEEETT-TTEEEESS-EE-------TTBSEEEE-SSSTEEEEEE--TTEEEEESSTT--SEEEESES--TTTEEESB-
T ss_pred eEEEEecC-CCceEECcCCc-------cccccceeecCCCeeEEEe--cCceEEEECCC--CCeEEeccccceeEEcCcc
Confidence 45556555 23455555431 0112345777888999996 46799999988 8889999763110
Q ss_pred --------ceeeecceecCCCCEEEEEEeccCCC---------------------------CCCcceEEEEEEcCCCceE
Q 004816 190 --------LVSYADGIFDPRFNRYVTVREDRRQD---------------------------ALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 190 --------~~~~~~~~~SPdG~~l~~~~~~~~~~---------------------------~~~~~~~l~~~dl~~g~~~ 234 (729)
-.+...+-|||||++|+|.+-+...- ..+....|+++++++++..
T Consensus 92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~ 171 (353)
T PF00930_consen 92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT 171 (353)
T ss_dssp -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC
T ss_pred ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE
Confidence 01224456999999999997654321 1124567999999998875
Q ss_pred Eeee------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC-C
Q 004816 235 VLVS------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-S 307 (729)
Q Consensus 235 ~lt~------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws-p 307 (729)
.+.. .......+.|++|+++|++...++.. +...|.++|+. +|..+.+. ......|......+.+. +
T Consensus 172 ~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q---~~~~l~~~d~~-tg~~~~~~--~e~~~~Wv~~~~~~~~~~~ 245 (353)
T PF00930_consen 172 ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQ---NRLDLVLCDAS-TGETRVVL--EETSDGWVDVYDPPHFLGP 245 (353)
T ss_dssp EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTS---TEEEEEEEEEC-TTTCEEEE--EEESSSSSSSSSEEEE-TT
T ss_pred EeeeccccCCCccCcccceecCCCcEEEEEEcccCC---CEEEEEEEECC-CCceeEEE--EecCCcceeeecccccccC
Confidence 5432 22344577999999988888777655 56788999998 67653222 33333565444556665 7
Q ss_pred CCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccC-CcccccCcceeeeeecCCCCEEEEEEEE--CCeEEEEEE
Q 004816 308 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR-PLWVFGINSYEIIQSHGEKNLIACSYRQ--NGRSYLGIL 383 (729)
Q Consensus 308 DG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~l~~~s~~--~g~~~ly~~ 383 (729)
|+. +++.+.+ .|+.+||+++.+++..+.||.++.++.. ..|.. +++.|||++.. .+..|||++
T Consensus 246 ~~~~~l~~s~~-~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~------------~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 246 DGNEFLWISER-DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDE------------DNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp TSSEEEEEEET-TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEEC------------TSSEEEEEESSGGTTSBEEEEE
T ss_pred CCCEEEEEEEc-CCCcEEEEEcccccceeccccCceeecccceEcC------------CCCEEEEEecCCCCCceEEEEE
Confidence 887 8888886 8999999999999999999977766643 23332 77899999986 457899999
Q ss_pred ECC-CCceEeeccCCcce--EEeeeeCCEEEEEEeCCCCCc
Q 004816 384 DDF-GHSLSLLDIPFTDI--DNITLGNDCLFVEGASGVEPS 421 (729)
Q Consensus 384 d~~-~g~~~~lt~~~~~v--~~~~~~~~~~~~~~~~~~~~~ 421 (729)
+++ ++++++||...... ..++++++.++...++++.|.
T Consensus 313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 999 99999999876654 333777888888898888763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=159.29 Aligned_cols=223 Identities=22% Similarity=0.262 Sum_probs=156.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc--hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhcc
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL--NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 545 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~--~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~ 545 (729)
.+..+.+.+|.|.. . .....|+||++|||.+....... ......++..|+.|+.+|||-.+.+.
T Consensus 60 ~~~~~~~~~y~p~~-~----~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~--------- 125 (312)
T COG0657 60 SGDGVPVRVYRPDR-K----AAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHP--------- 125 (312)
T ss_pred CCCceeEEEECCCC-C----CCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCC---------
Confidence 55567788899821 0 24568999999999775544432 34556667789999999999776531
Q ss_pred CCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh--CC---CcceEEEEeccccChhHHhhhcc--
Q 004816 546 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA--FR---DTFKAGASLYGVADLSMLRAETH-- 615 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~--~~---~~~~a~v~~~~~~d~~~~~~~~~-- 615 (729)
+ ...++|+.++++|+.++ ..+|+++|+++|+|.||.+++.++. +. ....+.++++|..|...-.....
T Consensus 126 -~-p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~~~~~~~~ 203 (312)
T COG0657 126 -F-PAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGY 203 (312)
T ss_pred -C-CchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcccccchhhc
Confidence 1 13489999999999987 3589999999999999999998886 32 36799999999988765000000
Q ss_pred ---------hhhhhhhhhhcCChhhh--hhcCccccc--CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 616 ---------KFESRYIDNLVGSEKDY--YEKSPINFV--DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 616 ---------~~~~~~~~~~~~~~~~~--~~~sp~~~~--~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
.....+.....+..... ...+|+... .. -+|+++++|+.|.+.+ ++..+.++|+++|++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~ 280 (312)
T COG0657 204 GEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRV 280 (312)
T ss_pred CCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEE
Confidence 00111222222211111 234554433 23 4789999999999876 89999999999999999999
Q ss_pred ECCCCcccC--CcccHHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFR--KAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 683 ~~~~gH~~~--~~~~~~~~~~~~~~fl~~ 709 (729)
+++..|+|. ........+..+.+|+..
T Consensus 281 ~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 281 YPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred eCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 999999983 333344556677777763
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=162.14 Aligned_cols=239 Identities=15% Similarity=0.137 Sum_probs=149.8
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+...+... ||..+....+.+.... .....|+||++||..++.....+...+..+.++||.|+++|+||.|+....
T Consensus 72 ~re~l~~~-DG~~~~ldw~~~~~~~----~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~ 146 (388)
T PLN02511 72 RRECLRTP-DGGAVALDWVSGDDRA----LPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVT 146 (388)
T ss_pred eEEEEECC-CCCEEEEEecCccccc----CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence 44456666 8888876554432110 123468999999985554332334456667789999999999987764321
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCc--ceEEEEeccccChhHH----h
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDT--FKAGASLYGVADLSML----R 611 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~--~~a~v~~~~~~d~~~~----~ 611 (729)
- ...+.....+|+.++++++..+. ...++.++|||+||.+++.++. ++++ +.+++++++..++... .
T Consensus 147 ~----~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~ 220 (388)
T PLN02511 147 T----PQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFH 220 (388)
T ss_pred C----cCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHh
Confidence 0 01111234789999999998763 3468999999999999999987 7776 7888877766554110 0
Q ss_pred h------------hcchhhh-h--hhh---------------------h-----hcC--Ch-hhhhhcCcccccCCCCCC
Q 004816 612 A------------ETHKFES-R--YID---------------------N-----LVG--SE-KDYYEKSPINFVDKFSCP 647 (729)
Q Consensus 612 ~------------~~~~~~~-~--~~~---------------------~-----~~~--~~-~~~~~~sp~~~~~~i~~P 647 (729)
. ....... . ... . ..+ .. +.|...++...+.+|++|
T Consensus 221 ~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~I~vP 300 (388)
T PLN02511 221 KGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKHVRVP 300 (388)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhccCCCC
Confidence 0 0000000 0 000 0 000 11 223455667788899999
Q ss_pred EEEEEeCCCCCCChHHHH-HHHHHHHhCCCCEEEEEECCCCcccCC--cccH---HHHHHHHHHHHHHHhC
Q 004816 648 IILFQGLEDKVVPPDQAR-KIYKALKENGLPVALVEYEGEQHGFRK--AENI---KFTLEQQMVFFARVVG 712 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~-~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~~---~~~~~~~~~fl~~~l~ 712 (729)
+|+++|++|+++|.+... ... +....+++++++++||.... ++.. .-..+.+.+||+....
T Consensus 301 tLiI~g~dDpi~p~~~~~~~~~----~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~~ 367 (388)
T PLN02511 301 LLCIQAANDPIAPARGIPREDI----KANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALEE 367 (388)
T ss_pred eEEEEcCCCCcCCcccCcHhHH----hcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999999999999875432 222 22346799999999996322 1110 1245677888887764
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-16 Score=159.74 Aligned_cols=229 Identities=20% Similarity=0.229 Sum_probs=141.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.++++-. |..|.+++..|.. .++.|+||++-|. .+.....+.....+|+.+|++++++|.+|.|...
T Consensus 164 ~i~~v~iP~e--g~~I~g~LhlP~~-------~~p~P~VIv~gGl-Ds~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~ 233 (411)
T PF06500_consen 164 PIEEVEIPFE--GKTIPGYLHLPSG-------EKPYPTVIVCGGL-DSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESP 233 (411)
T ss_dssp EEEEEEEEET--TCEEEEEEEESSS-------SS-EEEEEEE--T-TS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGT
T ss_pred CcEEEEEeeC--CcEEEEEEEcCCC-------CCCCCEEEEeCCc-chhHHHHHHHHHHHHHhCCCEEEEEccCCCcccc
Confidence 4688888884 7999999999975 5678988887554 3433333445557789999999999999765321
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC-hhHHhhhc
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD-LSMLRAET 614 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d-~~~~~~~~ 614 (729)
......+. -.-..++++||...+.+|..||+++|.|+||+.|.+++. ++++++++|+..|++. +..-....
T Consensus 234 ---~~~l~~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~ 306 (411)
T PF06500_consen 234 ---KWPLTQDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQ 306 (411)
T ss_dssp ---TT-S-S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHH
T ss_pred ---cCCCCcCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHH
Confidence 11111121 123568899999999999999999999999999999997 8999999999998643 22111111
Q ss_pred chhhhhhhhh---hcC----Chh----hhhhcCcccc--c--CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEE
Q 004816 615 HKFESRYIDN---LVG----SEK----DYYEKSPINF--V--DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 679 (729)
Q Consensus 615 ~~~~~~~~~~---~~~----~~~----~~~~~sp~~~--~--~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 679 (729)
......|++. .+| +.+ ....+|...+ + .+..+|+|.+.+++|.++|.++..-++.. +.+-+
T Consensus 307 ~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~~----s~~gk 382 (411)
T PF06500_consen 307 QRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAES----STDGK 382 (411)
T ss_dssp TTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHHT----BTT-E
T ss_pred hcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHhc----CCCCc
Confidence 1111222222 122 111 2234444332 3 56778999999999999999887655433 33446
Q ss_pred EEEECCCC-cccCCcccHHHHHHHHHHHHHHHh
Q 004816 680 LVEYEGEQ-HGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 680 ~~~~~~~g-H~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
...++... |. .....+..+.+||++.|
T Consensus 383 ~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 383 ALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp EEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred eeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 66776544 53 34588889999999875
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=140.13 Aligned_cols=145 Identities=26% Similarity=0.322 Sum_probs=112.3
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcE
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 573 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 573 (729)
+||++||.... ...+..+++.|+++||.|+.+|+++.+.... ..++..+++++.+... +.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAGYP-DPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHHHC-TCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhhcC-CCCcE
Confidence 58999998443 4457788999999999999999997665311 2356666666543222 78999
Q ss_pred EEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEe
Q 004816 574 CITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQG 653 (729)
Q Consensus 574 ~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G 653 (729)
+++|||+||.+++.++...++++++|+.+|..+ ...+.+.+.|+|+++|
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~~~v~~~v~~~~~~~-------------------------------~~~~~~~~~pv~~i~g 112 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARNPRVKAVVLLSPYPD-------------------------------SEDLAKIRIPVLFIHG 112 (145)
T ss_dssp EEEEETHHHHHHHHHHHHSTTESEEEEESESSG-------------------------------CHHHTTTTSEEEEEEE
T ss_pred EEEEEccCcHHHHHHhhhccceeEEEEecCccc-------------------------------hhhhhccCCcEEEEEE
Confidence 999999999999999983389999999999311 0113355679999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 654 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 654 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
++|..+++++..+++++++ .+.+++++++++|+
T Consensus 113 ~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 113 ENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp TT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred CCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 9999999999999999988 47899999999995
|
... |
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=158.64 Aligned_cols=209 Identities=22% Similarity=0.276 Sum_probs=140.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc--c------hhhhHHHhhCCcEEEEecCCCCCCCchhH
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI--L------NLSIQYWTSRGWAFVDVNYGGSTGYGREF 539 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~--~------~~~~~~la~~G~~v~~~d~rGs~g~g~~~ 539 (729)
||.+|.+.+|.| +.. ..++.|+||..|+......... . ......|+++||+|+..|.||.++++..+
T Consensus 1 DGv~L~adv~~P-~~~----~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~ 75 (272)
T PF02129_consen 1 DGVRLAADVYRP-GAD----GGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEF 75 (272)
T ss_dssp TS-EEEEEEEEE---T----TSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B
T ss_pred CCCEEEEEEEec-CCC----CCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcc
Confidence 789999999999 211 2678999999998742210110 0 01123499999999999999988877665
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH-Hhh-hc--
Q 004816 540 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-LRA-ET-- 614 (729)
Q Consensus 540 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~-~~~-~~-- 614 (729)
... ...+.+|..++|+|+.+++..+ .||+++|.|++|++++.++. .|+.++|++...+..|+.. ... ..
T Consensus 76 ~~~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~ 149 (272)
T PF02129_consen 76 DPM-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAF 149 (272)
T ss_dssp -TT-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEE
T ss_pred ccC-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcc
Confidence 432 4467899999999999997655 79999999999999999998 8999999999888766543 100 00
Q ss_pred -c----hh---------------------h---------hh----------hhhhhc---CChhhhhhcCcccccCCCCC
Q 004816 615 -H----KF---------------------E---------SR----------YIDNLV---GSEKDYYEKSPINFVDKFSC 646 (729)
Q Consensus 615 -~----~~---------------------~---------~~----------~~~~~~---~~~~~~~~~sp~~~~~~i~~ 646 (729)
. .+ . .. +..... ...+.+.+.++..++.++++
T Consensus 150 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~v 229 (272)
T PF02129_consen 150 RLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDV 229 (272)
T ss_dssp BCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--S
T ss_pred cccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCC
Confidence 0 00 0 00 000000 01233445555566789999
Q ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHhCC-CCEEEEEECCCCcc
Q 004816 647 PIILFQGLEDKVVPPDQARKIYKALKENG-LPVALVEYEGEQHG 689 (729)
Q Consensus 647 PvL~i~G~~D~~vp~~~~~~~~~~l~~~g-~~~~~~~~~~~gH~ 689 (729)
|+|+++|..|.... ..+.+.+++|+..+ .+.++++-|. +|+
T Consensus 230 P~l~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 230 PVLIVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEEEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CEEEecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999997666 89999999999988 6778888875 574
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-15 Score=149.96 Aligned_cols=231 Identities=12% Similarity=0.114 Sum_probs=145.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc--ccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR--GILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~--~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
+.+.+.. +|..+.+++..|.+ . +.+.||++|||+..... ..+...++.|+++||.|+++|+||.|.+.
T Consensus 3 ~~~~~~~--~~~~l~g~~~~p~~-------~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~ 72 (274)
T TIGR03100 3 RALTFSC--EGETLVGVLHIPGA-------S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSE 72 (274)
T ss_pred eeEEEEc--CCcEEEEEEEcCCC-------C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCC
Confidence 3566766 68889999999865 1 23567777877543222 22445678899999999999999866532
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhH-----Hh
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSM-----LR 611 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~-----~~ 611 (729)
... ..+ ....+|+.++++++.++.. ..++|+++|||+||++++.++.++++++++|+.+|...... ..
T Consensus 73 ~~~-----~~~-~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~~~v~~lil~~p~~~~~~~~~~~~~ 145 (274)
T TIGR03100 73 GEN-----LGF-EGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPADLRVAGLVLLNPWVRTEAAQAASRI 145 (274)
T ss_pred CCC-----CCH-HHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhCCCccEEEEECCccCCcccchHHHH
Confidence 210 111 1226889999999987521 23679999999999999998876678999999998743211 00
Q ss_pred hhc---chhhhhhhhhhc-CC------hhhhhh----c---C-----------cccccCCCCCCEEEEEeCCCCCCChHH
Q 004816 612 AET---HKFESRYIDNLV-GS------EKDYYE----K---S-----------PINFVDKFSCPIILFQGLEDKVVPPDQ 663 (729)
Q Consensus 612 ~~~---~~~~~~~~~~~~-~~------~~~~~~----~---s-----------p~~~~~~i~~PvL~i~G~~D~~vp~~~ 663 (729)
... ......++...+ |. ...+.. . . -...+..+++|+|+++|..|...+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~ 225 (274)
T TIGR03100 146 RHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFA 225 (274)
T ss_pred HHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHH
Confidence 000 000001111110 10 000000 0 0 012244678999999999998742111
Q ss_pred -----HHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 664 -----ARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 664 -----~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+.++.+.+.. ..++++++++++|.+.......+..+.+.+||+
T Consensus 226 ~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 226 DSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred HHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 0222222332 357899999999987777777899999999986
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=152.03 Aligned_cols=202 Identities=14% Similarity=0.159 Sum_probs=127.9
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
.+.|+||++||.+++. ..|...+..|. +||.|+++|+||.|.+.... ... ...+|....+..+++. ++
T Consensus 11 ~~~~~iv~lhG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~----~~~---~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 11 ADAPVVVLSSGLGGSG--SYWAPQLDVLT-QRFHVVTYDHRGTGRSPGEL----PPG---YSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCCEEEEEcCCCcch--hHHHHHHHHHH-hccEEEEEcCCCCCCCCCCC----ccc---CCHHHHHHHHHHHHHH--hC
Confidence 3468899999985433 34555555554 57999999999877654321 111 1234443333333332 24
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh-----------hc--chh---------hhhhhhhh-
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA-----------ET--HKF---------ESRYIDNL- 625 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~-----------~~--~~~---------~~~~~~~~- 625 (729)
.+++.++|||+||++++.++. +|++++++|+.++......... .. ..+ ...++...
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENA 158 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccc
Confidence 578999999999999999988 8889999998887543211000 00 000 00000000
Q ss_pred ----------cC---Ch-------hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 626 ----------VG---SE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 626 ----------~~---~~-------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
.. .. ..+...+....++++++|+|+++|++|..+|+++++++++.+. ..+++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~ 234 (257)
T TIGR03611 159 ARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALP----NAQLKLLPY 234 (257)
T ss_pred hhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcC----CceEEEECC
Confidence 00 00 0011122334567889999999999999999999988887764 347889999
Q ss_pred CCcccCCcccHHHHHHHHHHHHH
Q 004816 686 EQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 686 ~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+||.+.. ++..++.+.+.+|++
T Consensus 235 ~gH~~~~-~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 235 GGHASNV-TDPETFNRALLDFLK 256 (257)
T ss_pred CCCCccc-cCHHHHHHHHHHHhc
Confidence 9998643 566778888888875
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=155.93 Aligned_cols=202 Identities=14% Similarity=0.125 Sum_probs=126.5
Q ss_pred CEEEEEcCCCCCCcccc-chhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~-~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
|.||++||.+.....+. +...+..+++.||.|+++|+||.|.+.... ..........+|+.++++.+ +.+
T Consensus 31 ~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~---~~~~~~~~~~~~l~~~l~~l------~~~ 101 (282)
T TIGR03343 31 EAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVV---MDEQRGLVNARAVKGLMDAL------DIE 101 (282)
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCc---CcccccchhHHHHHHHHHHc------CCC
Confidence 57999999754433221 112345567789999999999865543211 00011112245555555554 457
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh------------HHhhhc-ch---hhhhhhhh----------
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------------MLRAET-HK---FESRYIDN---------- 624 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~------------~~~~~~-~~---~~~~~~~~---------- 624 (729)
++.++||||||++++.++. +|++++++|+.++..... .+.... .. ....+...
T Consensus 102 ~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (282)
T TIGR03343 102 KAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLITE 181 (282)
T ss_pred CeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCcH
Confidence 9999999999999999998 999999999987642100 000000 00 00000000
Q ss_pred ---------hcCChh---hhh---------hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE
Q 004816 625 ---------LVGSEK---DYY---------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 683 (729)
Q Consensus 625 ---------~~~~~~---~~~---------~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 683 (729)
....+. .+. ..+....+.++++|+|+++|++|..++++.+.++++.++ +++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~i 257 (282)
T TIGR03343 182 ELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHVF 257 (282)
T ss_pred HHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEEe
Confidence 000000 000 011122356889999999999999999988888877765 5689999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHH
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+++||.. ..+....+.+.+.+|+.
T Consensus 258 ~~agH~~-~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 258 SRCGHWA-QWEHADAFNRLVIDFLR 281 (282)
T ss_pred CCCCcCC-cccCHHHHHHHHHHHhh
Confidence 9999975 44666788888888885
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=134.82 Aligned_cols=178 Identities=19% Similarity=0.258 Sum_probs=131.1
Q ss_pred CCCCCEEEEEcCCC---CCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC
Q 004816 489 EEKPPLLVKSHGGP---TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 565 (729)
Q Consensus 489 ~~~~P~vv~~hGg~---~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 565 (729)
.+..|+.|++|.-| +.+.+......+..|.++||+++.+||||-|++..+|. .|..+.+|+.++++|+.++
T Consensus 25 ~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD------~GiGE~~Da~aaldW~~~~ 98 (210)
T COG2945 25 TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFD------NGIGELEDAAAALDWLQAR 98 (210)
T ss_pred CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCccc------CCcchHHHHHHHHHHHHhh
Confidence 35678999988754 23444444557788899999999999999887666553 3556799999999999998
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCC
Q 004816 566 GKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 645 (729)
Q Consensus 566 ~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~ 645 (729)
.. +..-..+.|+|+|+++++.++.+-+.....++..|..+...+ .++....
T Consensus 99 hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~~~~is~~p~~~~~df----------------------------s~l~P~P 149 (210)
T COG2945 99 HP-DSASCWLAGFSFGAYIAMQLAMRRPEILVFISILPPINAYDF----------------------------SFLAPCP 149 (210)
T ss_pred CC-CchhhhhcccchHHHHHHHHHHhcccccceeeccCCCCchhh----------------------------hhccCCC
Confidence 43 223347899999999999999833335666777776552111 1244556
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+|.|+++|+.|.++++....++++. .+.+++++++++|.|.. ......+.+.+|+.
T Consensus 150 ~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~g--Kl~~l~~~i~~~l~ 205 (210)
T COG2945 150 SPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFHG--KLIELRDTIADFLE 205 (210)
T ss_pred CCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceecc--cHHHHHHHHHHHhh
Confidence 8999999999999988777777655 46789999999998864 33456667777774
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-15 Score=155.26 Aligned_cols=233 Identities=16% Similarity=0.162 Sum_probs=143.8
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc--------------------c---c-hhhhHHHh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--------------------I---L-NLSIQYWT 518 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~--------------------~---~-~~~~~~la 518 (729)
+... +|..|....|.|.+ +..+|+++||........ . | ..+++.|.
T Consensus 2 ~~~~-~g~~l~~~~~~~~~---------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~ 71 (332)
T TIGR01607 2 FRNK-DGLLLKTYSWIVKN---------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFN 71 (332)
T ss_pred ccCC-CCCeEEEeeeeccC---------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHH
Confidence 3445 88899988888743 246999999964333211 1 1 35688999
Q ss_pred hCCcEEEEecCCCCCCCchh-HHHhhccCCCcccHHHHHHHHHHHHhC------------------CCCCCCcEEEEEcC
Q 004816 519 SRGWAFVDVNYGGSTGYGRE-FRERLLGRWGIVDVNDCCSCATFLVGS------------------GKADEKRLCITGGS 579 (729)
Q Consensus 519 ~~G~~v~~~d~rGs~g~g~~-~~~~~~~~~~~~~~~D~~~~~~~l~~~------------------~~~d~~ri~i~G~S 579 (729)
++||.|+++|+||.|..... ........| ..-++|+...++.+.+. ..-...+++|+|||
T Consensus 72 ~~G~~V~~~D~rGHG~S~~~~~~~g~~~~~-~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhS 150 (332)
T TIGR01607 72 KNGYSVYGLDLQGHGESDGLQNLRGHINCF-DDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLS 150 (332)
T ss_pred HCCCcEEEecccccCCCccccccccchhhH-HHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeecc
Confidence 99999999999987654321 100000111 11257777777776541 11113579999999
Q ss_pred hHHHHHHHHHh-CCC--------cceEEEEeccccChhHH---------------hhhcchhhhhhh-hh---hcCCh--
Q 004816 580 AGGYTTLAALA-FRD--------TFKAGASLYGVADLSML---------------RAETHKFESRYI-DN---LVGSE-- 629 (729)
Q Consensus 580 ~GG~~a~~~~~-~~~--------~~~a~v~~~~~~d~~~~---------------~~~~~~~~~~~~-~~---~~~~~-- 629 (729)
|||.+++.++. ++. .++++|+.+|...+... ......+..... .. ...++
T Consensus 151 mGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~ 230 (332)
T TIGR01607 151 MGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYV 230 (332)
T ss_pred CccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhh
Confidence 99999998875 332 58899988876432110 000000000000 00 00000
Q ss_pred hhhhhcCcc----------------------cccCCC--CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 630 KDYYEKSPI----------------------NFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 630 ~~~~~~sp~----------------------~~~~~i--~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
......+|+ ..+.++ ++|+|++||++|.+++++.+.++++.+... +++++++++
T Consensus 231 ~~~~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~--~~~l~~~~g 308 (332)
T TIGR01607 231 NDIIKFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSIS--NKELHTLED 308 (332)
T ss_pred hhHHhcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccCC--CcEEEEECC
Confidence 000001111 123445 689999999999999999999888776542 468899999
Q ss_pred CCcccCCcccHHHHHHHHHHHHH
Q 004816 686 EQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 686 ~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++|.+.......+.++.+.+|+.
T Consensus 309 ~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 309 MDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCCCccCCCHHHHHHHHHHHhh
Confidence 99998776667889999999985
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=149.21 Aligned_cols=183 Identities=22% Similarity=0.266 Sum_probs=123.0
Q ss_pred EEEEcCCCCCCcccc-chhhhHHHhh-CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC---CCCC
Q 004816 495 LVKSHGGPTSEARGI-LNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKAD 569 (729)
Q Consensus 495 vv~~hGg~~~~~~~~-~~~~~~~la~-~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d 569 (729)
||++|||.+...... .......+++ .|+.|+.+|||-++... ....++|+.++++|+.++ ..+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~~-----------~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEAP-----------FPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTSS-----------TTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccccc-----------ccccccccccceeeecccccccccc
Confidence 789999987654443 3345566665 89999999999654321 124489999999999998 4578
Q ss_pred CCcEEEEEcChHHHHHHHHHh---C--CCcceEEEEeccccCh-h----HHhhh---cc--hhhhh----hhhhhcC-Ch
Q 004816 570 EKRLCITGGSAGGYTTLAALA---F--RDTFKAGASLYGVADL-S----MLRAE---TH--KFESR----YIDNLVG-SE 629 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~---~--~~~~~a~v~~~~~~d~-~----~~~~~---~~--~~~~~----~~~~~~~-~~ 629 (729)
+++|+|+|+|.||.+++.++. . ...++++++.+|+.|+ . .+... .. .+... +.....+ ..
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYLPGSD 149 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHHSTGG
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccccccc
Confidence 999999999999999998885 2 2358999999999877 1 11100 00 00000 0111111 11
Q ss_pred hhhhhcCcccccCCC--CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC
Q 004816 630 KDYYEKSPINFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691 (729)
Q Consensus 630 ~~~~~~sp~~~~~~i--~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 691 (729)
......+|+.. ..+ -+|+++++|+.|..+ .++..++++|++.|++++++++++..|.|.
T Consensus 150 ~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 150 RDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp TTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred ccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 12234566655 223 258999999999764 789999999999999999999999999873
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=141.57 Aligned_cols=233 Identities=20% Similarity=0.221 Sum_probs=152.0
Q ss_pred EeeccCCCeEE-EEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH
Q 004816 462 EFPTEVPGQKA-YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540 (729)
Q Consensus 462 ~~~~~~dG~~l-~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~ 540 (729)
.+..+ ||..+ ..|...|. ..+.|+||.+||--++...+....++..+.++||.|+++|.||.++.-..
T Consensus 53 ~v~~p-dg~~~~ldw~~~p~--------~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~-- 121 (345)
T COG0429 53 RLETP-DGGFIDLDWSEDPR--------AAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT-- 121 (345)
T ss_pred EEEcC-CCCEEEEeeccCcc--------ccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc--
Confidence 44454 55554 44444443 34569999999976676667666788889999999999999998764321
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHH-HHHHHHHh--CCCcceEEEEeccccChhHHhhhcch-
Q 004816 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG-YTTLAALA--FRDTFKAGASLYGVADLSMLRAETHK- 616 (729)
Q Consensus 541 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG-~~a~~~~~--~~~~~~a~v~~~~~~d~~~~~~~~~~- 616 (729)
.... +.....+|+..+++++.+... +.++.++|.|+|| +++.+++. ....+.+++..+...|+.........
T Consensus 122 ~p~~--yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~ 197 (345)
T COG0429 122 SPRL--YHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSG 197 (345)
T ss_pred Ccce--ecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCc
Confidence 1111 112236999999999998643 5799999999999 66666665 33456777766655554321110000
Q ss_pred ----hhhh---------------------------hhh---------h-----hcC--C-hhhhhhcCcccccCCCCCCE
Q 004816 617 ----FESR---------------------------YID---------N-----LVG--S-EKDYYEKSPINFVDKFSCPI 648 (729)
Q Consensus 617 ----~~~~---------------------------~~~---------~-----~~~--~-~~~~~~~sp~~~~~~i~~Pv 648 (729)
+-.+ .+. . ..| + .+.|+..|.+..+.+|++|+
T Consensus 198 ~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~Ir~Pt 277 (345)
T COG0429 198 FSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKIRKPT 277 (345)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccccccccccce
Confidence 0000 000 0 001 2 35677889999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc-cCC-cc-cH-HHHHHHHHHHHHHHhC
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-FRK-AE-NI-KFTLEQQMVFFARVVG 712 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~~~-~~-~~-~~~~~~~~~fl~~~l~ 712 (729)
||||..+|++++++.--+.... .+..+.+..-+-+||. |.. .. +. .-..+++.+||+..+.
T Consensus 278 Lii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 278 LIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred EEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 9999999999988543333222 4557899999999995 322 21 11 2455678999988764
|
|
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=148.10 Aligned_cols=206 Identities=12% Similarity=0.070 Sum_probs=126.8
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.||++||.+. ....|...+..|.++||.|+++|+||.|.+.... .. .....++....+..++++ ++.+
T Consensus 46 ~~~lvliHG~~~--~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~---~~---~~~~~~~~a~~l~~~l~~--l~~~ 115 (302)
T PRK00870 46 GPPVLLLHGEPS--WSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPT---RR---EDYTYARHVEWMRSWFEQ--LDLT 115 (302)
T ss_pred CCEEEEECCCCC--chhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCC---Cc---ccCCHHHHHHHHHHHHHH--cCCC
Confidence 468999999743 3445677788888889999999999766432210 00 112234444444444443 2346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh------HH--hhhc----c--------------hhhhhhhhh
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------ML--RAET----H--------------KFESRYIDN 624 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~------~~--~~~~----~--------------~~~~~~~~~ 624 (729)
++.++|||+||.+++.++. +|++++++|+.++..... .+ +... . .........
T Consensus 116 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (302)
T PRK00870 116 DVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAA 195 (302)
T ss_pred CEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHH
Confidence 8999999999999999998 999999999887632100 00 0000 0 000000000
Q ss_pred h---cCCh------hhhhh---cCc-----------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEE
Q 004816 625 L---VGSE------KDYYE---KSP-----------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 681 (729)
Q Consensus 625 ~---~~~~------~~~~~---~sp-----------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 681 (729)
. .... ..+.. ..+ ...+.++++|+|+++|++|.++|... .++.+.+... ..+.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~~ 273 (302)
T PRK00870 196 YDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPHP 273 (302)
T ss_pred hhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhcccc-ccccee
Confidence 0 0000 00000 000 12356789999999999999999765 6676666532 123578
Q ss_pred EECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 682 EYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 682 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+++++||... .+....+.+.+.+|+.++
T Consensus 274 ~i~~~gH~~~-~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 274 TIKGAGHFLQ-EDSGEELAEAVLEFIRAT 301 (302)
T ss_pred eecCCCccch-hhChHHHHHHHHHHHhcC
Confidence 9999999753 466678888999998764
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=142.95 Aligned_cols=189 Identities=21% Similarity=0.215 Sum_probs=112.6
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhH-HHhhCCcEEEEecCCC-----CCCC-chhHHHhhccCCC-cccHHHH-----
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQ-YWTSRGWAFVDVNYGG-----STGY-GREFRERLLGRWG-IVDVNDC----- 555 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~-~la~~G~~v~~~d~rG-----s~g~-g~~~~~~~~~~~~-~~~~~D~----- 555 (729)
++..|+||++||.+... ..+..... .+......++.++-+- .+|+ ...|.+....... ..+.+++
T Consensus 11 ~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~ 88 (216)
T PF02230_consen 11 GKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAE 88 (216)
T ss_dssp ST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHH
T ss_pred CCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHH
Confidence 45679999999973333 22222222 2233467777775331 1121 1245432211111 1122333
Q ss_pred --HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhh
Q 004816 556 --CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDY 632 (729)
Q Consensus 556 --~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (729)
...++...+. .++++||++.|+|.||.+++.++. +|..+.++|+++|.........
T Consensus 89 ~l~~li~~~~~~-~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~~-------------------- 147 (216)
T PF02230_consen 89 RLDELIDEEVAY-GIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESELE-------------------- 147 (216)
T ss_dssp HHHHHHHHHHHT-T--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCCH--------------------
T ss_pred HHHHHHHHHHHc-CCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccccc--------------------
Confidence 3334444444 489999999999999999999998 9999999999999653221000
Q ss_pred hhcCcccccCCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 633 YEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 633 ~~~sp~~~~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
...... ++|++++||.+|+++|.+.+++.++.|++.+.+++++.|++.||.+. .+.++.+.+|+.+++
T Consensus 148 ------~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 148 ------DRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp ------CCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred ------ccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 000111 68999999999999999999999999999999999999999999865 467788899998874
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-14 Score=146.61 Aligned_cols=207 Identities=12% Similarity=0.057 Sum_probs=128.1
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+.+. ..|...+..|+.+ |.|+++|+||.|.+...-....... .....+|+...+..+++.. ..++
T Consensus 30 ~~vlllHG~~~~~--~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~-~~~~~~~~a~~l~~~l~~l--~~~~ 103 (294)
T PLN02824 30 PALVLVHGFGGNA--DHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPN-SFYTFETWGEQLNDFCSDV--VGDP 103 (294)
T ss_pred CeEEEECCCCCCh--hHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCcccccccc-ccCCHHHHHHHHHHHHHHh--cCCC
Confidence 6799999985543 4567777888776 6999999998765443210000000 1123455444444444332 2378
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh----------hHH----hhhc--chhhh-------------hhh
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----------SML----RAET--HKFES-------------RYI 622 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~----------~~~----~~~~--~~~~~-------------~~~ 622 (729)
+.++|||+||.+++.++. +|++++++|+.++.... ..+ .... ..... ..+
T Consensus 104 ~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (294)
T PLN02824 104 AFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNIL 183 (294)
T ss_pred eEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHHH
Confidence 999999999999999998 99999999998864310 000 0000 00000 000
Q ss_pred hhhcC-----Ch----------------hhhhh---c----CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC
Q 004816 623 DNLVG-----SE----------------KDYYE---K----SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 674 (729)
Q Consensus 623 ~~~~~-----~~----------------~~~~~---~----sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~ 674 (729)
..... +. ..+.. . .....+.++++|+|+++|++|..+|.+.++.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~--- 260 (294)
T PLN02824 184 CQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFD--- 260 (294)
T ss_pred HHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcC---
Confidence 00000 00 00000 0 011336678999999999999999998777654432
Q ss_pred CCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 675 GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 675 g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
...++++++++||... .+...++.+.+.+|+.++
T Consensus 261 -~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 261 -AVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVARH 294 (294)
T ss_pred -CccceEEeCCCCCChh-hhCHHHHHHHHHHHHhcC
Confidence 2358999999999654 467788889999998764
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-14 Score=143.23 Aligned_cols=226 Identities=19% Similarity=0.220 Sum_probs=154.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc---cccchhhhHHH-hhCCcEEEEecCCCCCCCchhHHHhh
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERL 543 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~---~~~~~~~~~~l-a~~G~~v~~~d~rGs~g~g~~~~~~~ 543 (729)
....+...+|.|.... +..+.|+||++|||++... ...|......+ .+.+..|+.+|||-.+.+-
T Consensus 70 ~~~~l~vRly~P~~~~----~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~------- 138 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSS----SETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHP------- 138 (336)
T ss_pred CCCCeEEEEEcCCCCC----cccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCC-------
Confidence 3456888899997732 2267899999999987544 34455555555 4569999999999766422
Q ss_pred ccCCCcccHHHHHHHHHHHHhC----CCCCCCcEEEEEcChHHHHHHHHHh-----C--CCcceEEEEeccccChhHHhh
Q 004816 544 LGRWGIVDVNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAALA-----F--RDTFKAGASLYGVADLSMLRA 612 (729)
Q Consensus 544 ~~~~~~~~~~D~~~~~~~l~~~----~~~d~~ri~i~G~S~GG~~a~~~~~-----~--~~~~~a~v~~~~~~d~~~~~~ 612 (729)
-...++|...+++|+.++ ..+|++||+|+|-|.||.+|..++. . +.++++.|+++|++.......
T Consensus 139 ----~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~ 214 (336)
T KOG1515|consen 139 ----FPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTE 214 (336)
T ss_pred ----CCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCC
Confidence 124589999999999885 5689999999999999999977764 2 468999999999876543322
Q ss_pred hcch-------h-----hhhhhhhhcCChh---hhhhcCccc-----ccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHH
Q 004816 613 ETHK-------F-----ESRYIDNLVGSEK---DYYEKSPIN-----FVDKFS-CPIILFQGLEDKVVPPDQARKIYKAL 671 (729)
Q Consensus 613 ~~~~-------~-----~~~~~~~~~~~~~---~~~~~sp~~-----~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l 671 (729)
.... . ...++.....+.. .....+|.. ...-.. .|+|++.++.|... .++..++++|
T Consensus 215 ~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~L 292 (336)
T KOG1515|consen 215 SEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKL 292 (336)
T ss_pred HHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHHH
Confidence 1000 0 0001111110100 111122222 111222 56999999999765 8899999999
Q ss_pred HhCCCCEEEEEECCCCcccCC--c--ccHHHHHHHHHHHHHHH
Q 004816 672 KENGLPVALVEYEGEQHGFRK--A--ENIKFTLEQQMVFFARV 710 (729)
Q Consensus 672 ~~~g~~~~~~~~~~~gH~~~~--~--~~~~~~~~~~~~fl~~~ 710 (729)
++.|++++++.++++.|+|.. + ....+.++.+.+|+.+.
T Consensus 293 kk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 293 KKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 999999999999999999632 2 34567777888887754
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-14 Score=151.37 Aligned_cols=226 Identities=11% Similarity=0.097 Sum_probs=137.7
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh-hhHHHh---hCCcEEEEecCCCCCCCc
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWT---SRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~la---~~G~~v~~~d~rGs~g~g 536 (729)
..+.+. .+.++++....|.+ ....|.||++||.+.+. ..|.. ....|+ .++|.|+++|+||.|.+.
T Consensus 178 ~~~~~~-~~~~l~~~~~gp~~-------~~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~ 247 (481)
T PLN03087 178 TSWLSS-SNESLFVHVQQPKD-------NKAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSP 247 (481)
T ss_pred eeeEee-CCeEEEEEEecCCC-------CCCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCc
Confidence 344444 57788888887765 22236799999985543 23332 223443 479999999999765443
Q ss_pred hhHHHhhccCCCcccHHHHHHHH-HHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh------
Q 004816 537 REFRERLLGRWGIVDVNDCCSCA-TFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------ 608 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~------ 608 (729)
... ... ...++....+ +.+++. .+.+++.++||||||++++.++. +|++++++|+.++.....
T Consensus 248 ~p~----~~~---ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~ 318 (481)
T PLN03087 248 KPA----DSL---YTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQA 318 (481)
T ss_pred CCC----CCc---CCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhH
Confidence 210 111 2244444444 234443 23468999999999999999988 999999999988643110
Q ss_pred -HHhh------hc-c-----h----hhh---h-----------hhhh---hcCC---hhhhh----hc--Cc--------
Q 004816 609 -MLRA------ET-H-----K----FES---R-----------YIDN---LVGS---EKDYY----EK--SP-------- 637 (729)
Q Consensus 609 -~~~~------~~-~-----~----~~~---~-----------~~~~---~~~~---~~~~~----~~--sp-------- 637 (729)
.... .. . . +.. . .... .... ...+. .. .+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 398 (481)
T PLN03087 319 TQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNI 398 (481)
T ss_pred HHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHH
Confidence 0000 00 0 0 000 0 0000 0000 00000 00 00
Q ss_pred -----------c-cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHH
Q 004816 638 -----------I-NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 705 (729)
Q Consensus 638 -----------~-~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 705 (729)
+ ....+|++|+|+++|++|..+|++.++.+.+.+. .+++++++++||.....+....+.+.+.+
T Consensus 399 i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP----~a~l~vI~~aGH~~~v~e~p~~fa~~L~~ 474 (481)
T PLN03087 399 ICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVP----RARVKVIDDKDHITIVVGRQKEFARELEE 474 (481)
T ss_pred HhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCC----CCEEEEeCCCCCcchhhcCHHHHHHHHHH
Confidence 0 0112689999999999999999999998887775 45899999999975433556778888888
Q ss_pred HHHH
Q 004816 706 FFAR 709 (729)
Q Consensus 706 fl~~ 709 (729)
|+..
T Consensus 475 F~~~ 478 (481)
T PLN03087 475 IWRR 478 (481)
T ss_pred Hhhc
Confidence 8754
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-14 Score=145.77 Aligned_cols=216 Identities=15% Similarity=0.142 Sum_probs=134.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.+++++.... +...|.||++||.+.+. ..|......|.. +|.|+++|+||.|.+... . ..+
T Consensus 10 ~~~~~~~~~~~~---------~~~~~plvllHG~~~~~--~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~---~--~~~ 72 (276)
T TIGR02240 10 DGQSIRTAVRPG---------KEGLTPLLIFNGIGANL--ELVFPFIEALDP-DLEVIAFDVPGVGGSSTP---R--HPY 72 (276)
T ss_pred CCcEEEEEEecC---------CCCCCcEEEEeCCCcch--HHHHHHHHHhcc-CceEEEECCCCCCCCCCC---C--CcC
Confidence 677887655421 11235689999974433 356666777654 699999999976654321 0 111
Q ss_pred Cc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh------HH---hhhcch
Q 004816 548 GI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------ML---RAETHK 616 (729)
Q Consensus 548 ~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~------~~---~~~~~~ 616 (729)
.. ...+|+.++++++ +.+++.++|||+||.+++.++. +|++++++|+.++..... .. ......
T Consensus 73 ~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (276)
T TIGR02240 73 RFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRR 146 (276)
T ss_pred cHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchh
Confidence 10 1134444444443 3468999999999999999998 999999999998764311 00 000000
Q ss_pred hh---------hhhhhhhc-CChh----------------hhh------hcCcccccCCCCCCEEEEEeCCCCCCChHHH
Q 004816 617 FE---------SRYIDNLV-GSEK----------------DYY------EKSPINFVDKFSCPIILFQGLEDKVVPPDQA 664 (729)
Q Consensus 617 ~~---------~~~~~~~~-~~~~----------------~~~------~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~ 664 (729)
+. ..+..... .+++ .+. .......+.++++|+|+++|++|..+|++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~ 226 (276)
T TIGR02240 147 YIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINM 226 (276)
T ss_pred hhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHH
Confidence 00 00000000 0000 000 0111233678899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 665 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 665 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+++.+.+. ..+++++++ ||... .+...++.+.+.+|+.+.-.
T Consensus 227 ~~l~~~~~----~~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~~~ 268 (276)
T TIGR02240 227 RLLAWRIP----NAELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEERQ 268 (276)
T ss_pred HHHHHhCC----CCEEEEEcC-CCchh-hccHHHHHHHHHHHHHHhhh
Confidence 88887765 347777875 99754 46677888899999987644
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=145.50 Aligned_cols=199 Identities=18% Similarity=0.149 Sum_probs=124.1
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
..|+||++||.+.+ ...|...++.|. .||.|+++|+||.|..... . .....++..+.+..+++. .+.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~-----~---~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPALT-PDFRVLRYDKRGHGLSDAP-----E---GPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHhh-cccEEEEecCCCCCCCCCC-----C---CCCCHHHHHHHHHHHHHH--hCC
Confidence 45899999997433 344556666664 6899999999987654221 1 112345555545544443 244
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH---Hhhh--------cchh----hhh--------------
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM---LRAE--------THKF----ESR-------------- 620 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~---~~~~--------~~~~----~~~-------------- 620 (729)
+++.++|||+||++++.++. +|++++++++.++...... +... .... ...
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 68999999999999999888 8899999888775432110 0000 0000 000
Q ss_pred --hhhhhcC-Chh-------hhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 621 --YIDNLVG-SEK-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 621 --~~~~~~~-~~~-------~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
+...... ... .+...+....+.++++|+|+++|++|..+|.+....+.+.+. ..+++++++++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 234 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIP 234 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcc
Confidence 0000000 000 011112223456788999999999999999988887777664 35889999999975
Q ss_pred CCcccHHHHHHHHHHHH
Q 004816 691 RKAENIKFTLEQQMVFF 707 (729)
Q Consensus 691 ~~~~~~~~~~~~~~~fl 707 (729)
.. +......+.+.+|+
T Consensus 235 ~~-~~p~~~~~~i~~fl 250 (251)
T TIGR02427 235 CV-EQPEAFNAALRDFL 250 (251)
T ss_pred cc-cChHHHHHHHHHHh
Confidence 43 45566777777775
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=153.31 Aligned_cols=249 Identities=16% Similarity=0.124 Sum_probs=160.2
Q ss_pred CCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc----hhhhHHHhhCCcEEEEecC
Q 004816 454 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNY 529 (729)
Q Consensus 454 ~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~----~~~~~~la~~G~~v~~~d~ 529 (729)
..-..|+..+.+. ||..+....+.+.+.. . ...+.|+|+++||...+...+.. ...+..|+++||.|+.+|.
T Consensus 40 ~gy~~e~h~v~T~-DGy~L~l~ri~~~~~~-~--~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~ 115 (395)
T PLN02872 40 AGYSCTEHTIQTK-DGYLLALQRVSSRNPR-L--GSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNV 115 (395)
T ss_pred cCCCceEEEEECC-CCcEEEEEEcCCCCCC-C--CCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccc
Confidence 3446788889998 9999987777543211 0 12345789999997555444322 2345568899999999999
Q ss_pred CCCCC-CchhHHHhhc-----cCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCC---cceEEEE
Q 004816 530 GGSTG-YGREFRERLL-----GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGAS 600 (729)
Q Consensus 530 rGs~g-~g~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~---~~~a~v~ 600 (729)
||.+. +|........ ..|......|+.++++++.+.. .+++.++|||+||.+++.++.+|+ +++++++
T Consensus 116 RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~~~p~~~~~v~~~~~ 192 (395)
T PLN02872 116 RGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAALTQPNVVEMVEAAAL 192 (395)
T ss_pred cccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHhhChHHHHHHHHHHH
Confidence 99653 3322211111 1122222479999999998752 478999999999999986666665 5777777
Q ss_pred eccccChhH----------------Hh--hh------cc---------hhh-----hhhhhhhc----------------
Q 004816 601 LYGVADLSM----------------LR--AE------TH---------KFE-----SRYIDNLV---------------- 626 (729)
Q Consensus 601 ~~~~~d~~~----------------~~--~~------~~---------~~~-----~~~~~~~~---------------- 626 (729)
.+|+..+.. +. .. .. .+. ...+....
T Consensus 193 l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~ 272 (395)
T PLN02872 193 LCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLE 272 (395)
T ss_pred hcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHh
Confidence 766532100 00 00 00 000 00000000
Q ss_pred ----C---------------------------Chhhhhh-cCcccccCCC--CCCEEEEEeCCCCCCChHHHHHHHHHHH
Q 004816 627 ----G---------------------------SEKDYYE-KSPINFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALK 672 (729)
Q Consensus 627 ----~---------------------------~~~~~~~-~sp~~~~~~i--~~PvL~i~G~~D~~vp~~~~~~~~~~l~ 672 (729)
+ +...|.. ..|.+.++++ ++|+++++|++|..++++.+.++.+.+.
T Consensus 273 ~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp 352 (395)
T PLN02872 273 YEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELP 352 (395)
T ss_pred cCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCC
Confidence 0 1111211 2355667888 4799999999999999999988888876
Q ss_pred hCCCCEEEEEECCCCcc--cCCcccHHHHHHHHHHHHHHHhC
Q 004816 673 ENGLPVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 673 ~~g~~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
. ..+++.+++.+|. +...+..+..++.+++|++++.+
T Consensus 353 ~---~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 353 S---KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred C---ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 4 2478889999996 44556677899999999998765
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=136.26 Aligned_cols=180 Identities=19% Similarity=0.120 Sum_probs=113.8
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhh--CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~--~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
|.||++||.+.+...+........+.+ .+|.|+++|++|. + +++...++.+.++. +.
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~---~----------------~~~~~~l~~l~~~~--~~ 60 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPY---P----------------ADAAELLESLVLEH--GG 60 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCC---H----------------HHHHHHHHHHHHHc--CC
Confidence 579999998655544333334455655 3799999999863 2 23444445555442 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc-chhhhhhhh--hhcC--ChhhhhhcCcccccCCC
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HKFESRYID--NLVG--SEKDYYEKSPINFVDKF 644 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~~sp~~~~~~i 644 (729)
+++.++|+|+||++++.++. +|. + +|+++|..+........ ......+.. ..+. ..+......+ ..+. .
T Consensus 61 ~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~i~-~ 135 (190)
T PRK11071 61 DPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKVMQI-DPLE-S 135 (190)
T ss_pred CCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHhcCC-ccCC-C
Confidence 68999999999999999998 773 3 47788876642221110 000000000 0000 0011121222 1233 5
Q ss_pred CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 645 ~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.+|++++||++|.+||++.+.++++.. .++.++|++|.|... ++.++.+.+|+.
T Consensus 136 ~~~v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 136 PDLIWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred hhhEEEEEeCCCCcCCHHHHHHHHHhc-------ceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 678899999999999999999999843 566889999999543 678888888874
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-14 Score=145.60 Aligned_cols=215 Identities=12% Similarity=0.106 Sum_probs=132.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++.+..+. ..|.||++||.+.+. ..|...++.|++++ .|+++|+||.|.+.... ..
T Consensus 15 ~g~~i~y~~~G------------~g~~vvllHG~~~~~--~~w~~~~~~L~~~~-~via~D~~G~G~S~~~~-----~~- 73 (295)
T PRK03592 15 LGSRMAYIETG------------EGDPIVFLHGNPTSS--YLWRNIIPHLAGLG-RCLAPDLIGMGASDKPD-----ID- 73 (295)
T ss_pred CCEEEEEEEeC------------CCCEEEEECCCCCCH--HHHHHHHHHHhhCC-EEEEEcCCCCCCCCCCC-----CC-
Confidence 67777754331 126799999986443 45566778888876 99999999776543321 11
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh---hHH-------h---hh
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---SML-------R---AE 613 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~---~~~-------~---~~ 613 (729)
...++....+..+++. ++.+++.++|||+||.+++.++. +|++++++|++++.... ..+ . ..
T Consensus 74 --~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (295)
T PRK03592 74 --YTFADHARYLDAWFDA--LGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRS 149 (295)
T ss_pred --CCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhC
Confidence 1233333333333333 13478999999999999999998 99999999998874311 100 0 00
Q ss_pred cc---h-h--hhhhhhhhcC-------Chh---hhh-----------------hcCc--------------ccccCCCCC
Q 004816 614 TH---K-F--ESRYIDNLVG-------SEK---DYY-----------------EKSP--------------INFVDKFSC 646 (729)
Q Consensus 614 ~~---~-~--~~~~~~~~~~-------~~~---~~~-----------------~~sp--------------~~~~~~i~~ 646 (729)
.. . . ...+...... .++ .+. ...+ ...+.++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 229 (295)
T PRK03592 150 PGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDV 229 (295)
T ss_pred cccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCC
Confidence 00 0 0 0000000000 000 000 0000 012456899
Q ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 647 PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
|+|+++|++|..+++....++...+.. ..++++++++||... .+...+..+.+.+|+.+..
T Consensus 230 P~lii~G~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 230 PKLLINAEPGAILTTGAIRDWCRSWPN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred CeEEEeccCCcccCcHHHHHHHHHhhh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhc
Confidence 999999999999966666565544332 458899999999764 4667889999999998764
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-14 Score=143.25 Aligned_cols=200 Identities=18% Similarity=0.138 Sum_probs=124.7
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|+||++||.++. ...|......|+. +|.|+++|+||.|....... .....+++.+.+..+++.. +.+
T Consensus 28 ~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~l~~~i~~~--~~~ 95 (278)
T TIGR03056 28 GPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFR-------FRFTLPSMAEDLSALCAAE--GLS 95 (278)
T ss_pred CCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCCCCCCCCccc-------cCCCHHHHHHHHHHHHHHc--CCC
Confidence 4789999997543 3445566666654 69999999997654322110 1123455555555555442 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH--------H-hh--hcchhh--------------hhhhhh-
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--------L-RA--ETHKFE--------------SRYIDN- 624 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~--------~-~~--~~~~~~--------------~~~~~~- 624 (729)
+++|+|||+||.+++.++. +|++++++|+.++...... + .. ...... ..+...
T Consensus 96 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (278)
T TIGR03056 96 PDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRDT 175 (278)
T ss_pred CceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhcc
Confidence 7899999999999999998 8998999988876432100 0 00 000000 000000
Q ss_pred --hcC--Chhhhh-----------------hc---CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEE
Q 004816 625 --LVG--SEKDYY-----------------EK---SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 680 (729)
Q Consensus 625 --~~~--~~~~~~-----------------~~---sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 680 (729)
... ....+. .. .....++++++|+|+++|++|..+|++..+.+.+.+. .+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~----~~~~ 251 (278)
T TIGR03056 176 GSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVP----TATL 251 (278)
T ss_pred ccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhcc----CCeE
Confidence 000 000000 00 0112356788999999999999999988888776654 4588
Q ss_pred EEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 681 VEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 681 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++++++||.+.. +...+..+.+.+|++
T Consensus 252 ~~~~~~gH~~~~-e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 252 HVVPGGGHLVHE-EQADGVVGLILQAAE 278 (278)
T ss_pred EEECCCCCcccc-cCHHHHHHHHHHHhC
Confidence 999999997654 456778888888873
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-14 Score=144.00 Aligned_cols=203 Identities=13% Similarity=0.094 Sum_probs=123.4
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.||++||++++.. ..+......+.+.||.|+++|+||.|...... ........+++...+..+++.. +.+
T Consensus 25 ~~~vl~~hG~~g~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~ 96 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH-EYLENLRELLKEEGREVIMYDQLGCGYSDQPD-----DSDELWTIDYFVDELEEVREKL--GLD 96 (288)
T ss_pred CCeEEEEcCCCCccH-HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCC-----cccccccHHHHHHHHHHHHHHc--CCC
Confidence 467899999865542 23444555555569999999999865432110 0000123455555555555542 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh-------cch-hh-----------------hhhhhhh
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-------THK-FE-----------------SRYIDNL 625 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~-------~~~-~~-----------------~~~~~~~ 625 (729)
++.++|||+||.+++.++. +|++++++|+.++.......... ... .. .......
T Consensus 97 ~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (288)
T TIGR01250 97 KFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEVF 176 (288)
T ss_pred cEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 7999999999999999988 99999999988775432211000 000 00 0000000
Q ss_pred c----C----------------Chhhh---------------hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHH
Q 004816 626 V----G----------------SEKDY---------------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 670 (729)
Q Consensus 626 ~----~----------------~~~~~---------------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~ 670 (729)
. . ....+ ...+....+.++++|+|+++|++|. ++++....+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~-~~~~~~~~~~~~ 255 (288)
T TIGR01250 177 YHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDT-MTPEAAREMQEL 255 (288)
T ss_pred HHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCc-cCHHHHHHHHHh
Confidence 0 0 00000 0001122356789999999999998 566777766665
Q ss_pred HHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 671 LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 671 l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+. .+++++++++||.... +...++.+.+.+|++
T Consensus 256 ~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 256 IA----GSRLVVFPDGSHMTMI-EDPEVYFKLLSDFIR 288 (288)
T ss_pred cc----CCeEEEeCCCCCCccc-CCHHHHHHHHHHHhC
Confidence 54 4578999999997544 466778888888863
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.7e-14 Score=142.42 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=124.1
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~ 568 (729)
...|.||++||.++.. ..|...+..|+ .+|.|+.+|+||.|..... ..+.. ...+|+.++++++
T Consensus 14 ~~~~~iv~lhG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~------~~~~~~~~~~d~~~~l~~l------ 78 (255)
T PRK10673 14 HNNSPIVLVHGLFGSL--DNLGVLARDLV-NDHDIIQVDMRNHGLSPRD------PVMNYPAMAQDLLDTLDAL------ 78 (255)
T ss_pred CCCCCEEEECCCCCch--hHHHHHHHHHh-hCCeEEEECCCCCCCCCCC------CCCCHHHHHHHHHHHHHHc------
Confidence 3457899999985543 34555566664 4799999999986644321 01110 1245566655554
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc-cCh--h---HHhh---h-----cchh--hhhhhhhhcC----
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV-ADL--S---MLRA---E-----THKF--ESRYIDNLVG---- 627 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~-~d~--~---~~~~---~-----~~~~--~~~~~~~~~~---- 627 (729)
..+++.++|||+||.+++.++. +|++++++|++++. .+. . .+.. . .... ...++.....
T Consensus 79 ~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (255)
T PRK10673 79 QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEGV 158 (255)
T ss_pred CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHHH
Confidence 3467999999999999999988 89999999987532 111 0 0000 0 0000 0000000000
Q ss_pred ---------C------h----hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 628 ---------S------E----KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 628 ---------~------~----~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
. . +.+........+.++++|+|+++|++|..++.+..+.+.+.+. .+++++++++||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH 234 (255)
T PRK10673 159 IQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGAGH 234 (255)
T ss_pred HHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCCCC
Confidence 0 0 0111111112355678999999999999999877777766554 558899999999
Q ss_pred ccCCcccHHHHHHHHHHHHHH
Q 004816 689 GFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 689 ~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.+. .+......+.+.+||.+
T Consensus 235 ~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 235 WVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred eee-ccCHHHHHHHHHHHHhc
Confidence 653 45667788888888875
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.2e-14 Score=141.15 Aligned_cols=200 Identities=12% Similarity=0.125 Sum_probs=124.1
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC-Cc
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE-KR 572 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~-~r 572 (729)
.||++||.+.+ ...|...+..|++.||.|+++|+||.|.+...- . .....+++..-+..+++. ++. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~-----~--~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTGAGISLTDS-----N--TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCcCCCCCCCc-----c--ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 49999998543 455777788888899999999999876543210 0 012233433333333332 122 58
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEecccc---C---hhHHh---hhc------------c-h-----hhhhhhhh
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA---D---LSMLR---AET------------H-K-----FESRYIDN 624 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~---d---~~~~~---~~~------------~-~-----~~~~~~~~ 624 (729)
+.++||||||.+++.++. +|++++++|+.++.. . ...+. ... . . ....+...
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 999999999999999998 999999999887641 1 01110 000 0 0 00001000
Q ss_pred h-cC--Chh--hh--hh--cCcc----------cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 625 L-VG--SEK--DY--YE--KSPI----------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 625 ~-~~--~~~--~~--~~--~sp~----------~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
. .. ..+ .+ .. ..+. ..+.++++|+|+++|++|..+|+..++.+.+.+. .++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~----~a~~~~i~~ 229 (255)
T PLN02965 154 YYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWP----PAQTYVLED 229 (255)
T ss_pred HHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCC----cceEEEecC
Confidence 0 00 000 00 00 0000 1234688999999999999999988888877765 348899999
Q ss_pred CCcccCCcccHHHHHHHHHHHHHH
Q 004816 686 EQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 686 ~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+||.... +...++.+.+.+|+.+
T Consensus 230 ~GH~~~~-e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 230 SDHSAFF-SVPTTLFQYLLQAVSS 252 (255)
T ss_pred CCCchhh-cCHHHHHHHHHHHHHH
Confidence 9997543 5666777777777654
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-14 Score=139.77 Aligned_cols=181 Identities=19% Similarity=0.263 Sum_probs=117.1
Q ss_pred EEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEE
Q 004816 495 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 574 (729)
Q Consensus 495 vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~ 574 (729)
||++||.+.+. ..|...+..| ++||.|+++|+||.|....... ......++....+..+++.- ..+++.
T Consensus 1 vv~~hG~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~l~~~l~~~--~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDPLAEAL-ARGYRVIAFDLPGHGRSDPPPD------YSPYSIEDYAEDLAELLDAL--GIKKVI 69 (228)
T ss_dssp EEEE-STTTTG--GGGHHHHHHH-HTTSEEEEEECTTSTTSSSHSS------GSGGSHHHHHHHHHHHHHHT--TTSSEE
T ss_pred eEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEecCCccccccccc------cCCcchhhhhhhhhhccccc--cccccc
Confidence 78999985443 6677788888 4899999999998665443211 11123444444444444432 237899
Q ss_pred EEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh--h----hcch-----------hhhhhhhhhcC--Ch-----
Q 004816 575 ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR--A----ETHK-----------FESRYIDNLVG--SE----- 629 (729)
Q Consensus 575 i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~--~----~~~~-----------~~~~~~~~~~~--~~----- 629 (729)
++|||+||.+++.++. +|++++++|+.+|........ . .... +.......... ..
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 9999999999999998 999999999999988643211 0 0000 00000000000 00
Q ss_pred -------hh----hhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 630 -------KD----YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 630 -------~~----~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
+. +...+....+.++++|+|+++|++|..++.+...++.+.+. +++++++|++||.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 217 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLP----NAELVVIPGAGHFL 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHST----TEEEEEETTSSSTH
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCC----CCEEEEECCCCCcc
Confidence 00 11223335567889999999999999999777766666553 67999999999975
|
... |
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=145.92 Aligned_cols=231 Identities=18% Similarity=0.207 Sum_probs=139.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc---------cchhhh---HHHhhCCcEEEEecCCCC-CC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---------ILNLSI---QYWTSRGWAFVDVNYGGS-TG 534 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~---------~~~~~~---~~la~~G~~v~~~d~rGs-~g 534 (729)
+|.++++..+.+.+ ....|.||++||...+.... .|...+ ..|...+|.|+++|+||. .|
T Consensus 14 ~~~~~~y~~~g~~~-------~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g 86 (351)
T TIGR01392 14 SDVRVAYETYGTLN-------AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYG 86 (351)
T ss_pred CCceEEEEeccccC-------CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCC
Confidence 56778877775533 12246899999975543221 233332 356678999999999983 22
Q ss_pred -Cchh-HHHhh---ccCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh
Q 004816 535 -YGRE-FRERL---LGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL 607 (729)
Q Consensus 535 -~g~~-~~~~~---~~~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~ 607 (729)
.+.+ +.... ..+.....++|+...+..+++.. ..++ +.++||||||.+++.++. +|++++++|+.++....
T Consensus 87 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 164 (351)
T TIGR01392 87 STGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARH 164 (351)
T ss_pred CCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcC
Confidence 2221 10000 00111234667666666555553 3357 999999999999999888 99999999998875431
Q ss_pred hH----Hhh----h---cc---------------hhh-hh------h-----hhhhcC----------------------
Q 004816 608 SM----LRA----E---TH---------------KFE-SR------Y-----IDNLVG---------------------- 627 (729)
Q Consensus 608 ~~----~~~----~---~~---------------~~~-~~------~-----~~~~~~---------------------- 627 (729)
.. +.. . .. ... .. + +...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 244 (351)
T TIGR01392 165 SAWCIAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESY 244 (351)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHH
Confidence 11 000 0 00 000 00 0 000000
Q ss_pred ------------Chh-------hhhhcCc-------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEE
Q 004816 628 ------------SEK-------DYYEKSP-------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 681 (729)
Q Consensus 628 ------------~~~-------~~~~~sp-------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 681 (729)
+.. .+...+. ...+++|++|+|+++|++|..+|++.++++.+.+......++++
T Consensus 245 ~~~~~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~ 324 (351)
T TIGR01392 245 LRYQGDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYV 324 (351)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEE
Confidence 000 0111110 13466789999999999999999999999999998765444554
Q ss_pred EE-CCCCcccCCcccHHHHHHHHHHHHH
Q 004816 682 EY-EGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 682 ~~-~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.+ +++||... .+...++.+.+.+||+
T Consensus 325 ~i~~~~GH~~~-le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 325 EIESPYGHDAF-LVETDQVEELIRGFLR 351 (351)
T ss_pred EeCCCCCcchh-hcCHHHHHHHHHHHhC
Confidence 54 68999653 3566777788888863
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=146.07 Aligned_cols=213 Identities=12% Similarity=0.059 Sum_probs=126.8
Q ss_pred CCCEEEEEcCCCCCCccccchhhh---HHHhhCCcEEEEecCCCCCCCchhHHH---hhccCCCccc-HHHHHHHHHHHH
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSI---QYWTSRGWAFVDVNYGGSTGYGREFRE---RLLGRWGIVD-VNDCCSCATFLV 563 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~---~~la~~G~~v~~~d~rGs~g~g~~~~~---~~~~~~~~~~-~~D~~~~~~~l~ 563 (729)
+.|+||++||.++.... +...+ ..|...+|.|+++|+||.|.+...... .....+.... .+|+.+....+.
T Consensus 40 ~~~~vll~~~~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (339)
T PRK07581 40 KDNAILYPTWYSGTHQD--NEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLT 117 (339)
T ss_pred CCCEEEEeCCCCCCccc--chhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHH
Confidence 45778888876544322 22221 356667899999999987654322110 0000111111 355554344454
Q ss_pred hCCCCCCCcE-EEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH--------h----h-----------------
Q 004816 564 GSGKADEKRL-CITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML--------R----A----------------- 612 (729)
Q Consensus 564 ~~~~~d~~ri-~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~--------~----~----------------- 612 (729)
+.. ..+++ .|+||||||++|+.++. +|++++++|+.++....... . .
T Consensus 118 ~~l--gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (339)
T PRK07581 118 EKF--GIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGL 195 (339)
T ss_pred HHh--CCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHH
Confidence 432 34684 78999999999999998 99999999988654321000 0 0
Q ss_pred -----hc------chh-h------------hhh----hhhhcC--Chhh-------hhh----------cCcccccCCCC
Q 004816 613 -----ET------HKF-E------------SRY----IDNLVG--SEKD-------YYE----------KSPINFVDKFS 645 (729)
Q Consensus 613 -----~~------~~~-~------------~~~----~~~~~~--~~~~-------~~~----------~sp~~~~~~i~ 645 (729)
.. ..+ . ..+ ...... ++.. +.. .+....+.+|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~ 275 (339)
T PRK07581 196 RAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSIT 275 (339)
T ss_pred HHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCC
Confidence 00 000 0 000 000000 0000 000 01123456789
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC-CCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG-EQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+|+|+++|++|..+|+..+..+.+.+. ..+++++++ +||.. ..+...++...+.+|+.+++.
T Consensus 276 ~PtLvI~G~~D~~~p~~~~~~l~~~ip----~a~l~~i~~~~GH~~-~~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 276 AKTFVMPISTDLYFPPEDCEAEAALIP----NAELRPIESIWGHLA-GFGQNPADIAFIDAALKELLA 338 (339)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeEEEeCCCCCccc-cccCcHHHHHHHHHHHHHHHh
Confidence 999999999999999998888877764 358899998 89964 345566788888999998764
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=141.56 Aligned_cols=218 Identities=17% Similarity=0.171 Sum_probs=142.5
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 549 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~ 549 (729)
..+.+.++.|.. .+++|+||++||+.. ....|...++.|+++||.|+++|++|..+.+ ..
T Consensus 37 ~~~p~~v~~P~~-------~g~~PvVv~lHG~~~--~~~~y~~l~~~Las~G~~VvapD~~g~~~~~-----------~~ 96 (313)
T PLN00021 37 PPKPLLVATPSE-------AGTYPVLLFLHGYLL--YNSFYSQLLQHIASHGFIVVAPQLYTLAGPD-----------GT 96 (313)
T ss_pred CCceEEEEeCCC-------CCCCCEEEEECCCCC--CcccHHHHHHHHHhCCCEEEEecCCCcCCCC-----------ch
Confidence 457778898965 467899999999843 3445777888999999999999988643211 11
Q ss_pred ccHHHHHHHHHHHHhC--------CCCCCCcEEEEEcChHHHHHHHHHh-CC-----CcceEEEEeccccChhHHhhhcc
Q 004816 550 VDVNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAALA-FR-----DTFKAGASLYGVADLSMLRAETH 615 (729)
Q Consensus 550 ~~~~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~~a~~~~~-~~-----~~~~a~v~~~~~~d~~~~~~~~~ 615 (729)
.+.+|..++++|+.+. ..+|.+|++|+|||+||++++.++. ++ .+|+++|...|+........ +
T Consensus 97 ~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~~-~- 174 (313)
T PLN00021 97 DEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGKQ-T- 174 (313)
T ss_pred hhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccccccccC-C-
Confidence 2356677777877652 2367789999999999999999987 55 36899999988755321100 0
Q ss_pred hhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCC-----CCC----hH-HHHHHHHHHHhCCCCEEEEEECC
Q 004816 616 KFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK-----VVP----PD-QARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~-----~vp----~~-~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
.+..+. .. ....++..|+|++++..|. .+| .. +..++++.++. +..+.+.++
T Consensus 175 ------------~p~il~-~~--~~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~---~~~~~~~~~ 236 (313)
T PLN00021 175 ------------PPPVLT-YA--PHSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA---PAVHFVAKD 236 (313)
T ss_pred ------------CCcccc-cC--cccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---CeeeeeecC
Confidence 000010 00 1122367999999998763 222 32 34677777654 778889999
Q ss_pred CCcccC-Cc---------------------ccHHHHHHHHHHHHHHHhCCCCC-------CCCCCceeccC
Q 004816 686 EQHGFR-KA---------------------ENIKFTLEQQMVFFARVVGHFDV-------ADEIIPIKIDN 727 (729)
Q Consensus 686 ~gH~~~-~~---------------------~~~~~~~~~~~~fl~~~l~~~~~-------~~~~~~~~~~~ 727 (729)
.||.-. .. ..++.....+..||+.+|.+..- ...+.|++++.
T Consensus 237 ~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~~~~~~~~~~~~~~p~~l~~ 307 (313)
T PLN00021 237 YGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDTGDLDAIVDGPSLAPVKLDP 307 (313)
T ss_pred CCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHhcCCCCCCeeccc
Confidence 999621 11 11234445678999999864321 12356666654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-13 Score=136.44 Aligned_cols=243 Identities=18% Similarity=0.190 Sum_probs=166.8
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
++.|+|+... +||.+++.+ +++++||++ -.-++.+++||||++|+|++--.... ....+||+++.++|++
T Consensus 50 GD~IiFt~~D--dlWe~slk~--g~~~ritS~----lGVvnn~kf~pdGrkvaf~rv~~~ss--~~taDly~v~~e~Ge~ 119 (668)
T COG4946 50 GDRIIFTCCD--DLWEYSLKD--GKPLRITSG----LGVVNNPKFSPDGRKVAFSRVMLGSS--LQTADLYVVPSEDGEA 119 (668)
T ss_pred CcEEEEEech--HHHHhhhcc--CCeeEEecc----cceeccccCCCCCcEEEEEEEEecCC--CccccEEEEeCCCCcE
Confidence 7789999654 499999998 899999987 34568899999999999965432211 1136899999999999
Q ss_pred EEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEE
Q 004816 234 QVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 234 ~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
+++|- |..+..-.-|+|||+-|+++..-.+-..| ..||.+..+ +.+..++.+.+. .+..+ .||.++
T Consensus 120 kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~--~~lYkv~~d-g~~~e~LnlGpa---------thiv~-~dg~iv 186 (668)
T COG4946 120 KRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQW--TELYKVNVD-GIKTEPLNLGPA---------THIVI-KDGIIV 186 (668)
T ss_pred EEEEEeccccceeeccCCCCCEEEEeccCCCcccc--eeeeEEccC-CceeeeccCCce---------eeEEE-eCCEEE
Confidence 99986 33333445799999988877654443323 468999887 554433222111 22222 566433
Q ss_pred EEEecC---------CC-ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEE
Q 004816 313 FVTDRK---------NG-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 382 (729)
Q Consensus 313 ~~~~~~---------~g-~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~ 382 (729)
..++.- .| ...||.-...+...+.+.+.+..+..|.-+ +.++||.++.+|..+||.
T Consensus 187 igRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV--------------~~RvYFlsD~eG~GnlYS 252 (668)
T COG4946 187 IGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV--------------GERVYFLSDHEGVGNLYS 252 (668)
T ss_pred EccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE--------------cceEEEEecccCccceEE
Confidence 333210 11 234775433333677777777666666543 468999999999999999
Q ss_pred EECCCCceEeeccCC-cceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeee
Q 004816 383 LDDFGHSLSLLDIPF-TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDF 438 (729)
Q Consensus 383 ~d~~~g~~~~lt~~~-~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~ 438 (729)
+|++|+.+++.|.-. .-...+..|++++++..+ +.+|++|+++.++++|.-
T Consensus 253 vdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~-----GdIylydP~td~lekldI 304 (668)
T COG4946 253 VDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNA-----GDIYLYDPETDSLEKLDI 304 (668)
T ss_pred eccCCchhhhcCCchhccccccCCCCcEEEEecC-----CcEEEeCCCcCcceeeec
Confidence 999999988877532 223444778888888766 469999999988877763
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=144.01 Aligned_cols=204 Identities=17% Similarity=0.208 Sum_probs=124.0
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+.+ ...|...+..|++ +|.|+++|++|.|.+.... ... ...++....+..+++. ...++
T Consensus 89 p~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~----~~~---~~~~~~a~~l~~~l~~--l~~~~ 156 (360)
T PLN02679 89 PPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPP----GFS---YTMETWAELILDFLEE--VVQKP 156 (360)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCC----Ccc---ccHHHHHHHHHHHHHH--hcCCC
Confidence 679999998544 3456666677765 7999999999766543210 001 1233333333322222 13468
Q ss_pred EEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChh------HHhh--------------hcchh-----h----hhh
Q 004816 573 LCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLS------MLRA--------------ETHKF-----E----SRY 621 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~------~~~~--------------~~~~~-----~----~~~ 621 (729)
+.|+|||+||.+++.++. +|++++++|++++..... .... ..... . ...
T Consensus 157 ~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (360)
T PLN02679 157 TVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRDN 236 (360)
T ss_pred eEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHHH
Confidence 999999999999988775 699999999988642110 0000 00000 0 000
Q ss_pred h----hhhcC------------------C---hhhhhh-------cCcccccCCCCCCEEEEEeCCCCCCChHHH-HHHH
Q 004816 622 I----DNLVG------------------S---EKDYYE-------KSPINFVDKFSCPIILFQGLEDKVVPPDQA-RKIY 668 (729)
Q Consensus 622 ~----~~~~~------------------~---~~~~~~-------~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~-~~~~ 668 (729)
+ ..... . ...+.. .+....+.++++|+|+++|++|..+|++.. .+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~~ 316 (360)
T PLN02679 237 LKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKYF 316 (360)
T ss_pred HHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHHH
Confidence 0 00000 0 001110 011234567899999999999999998743 2344
Q ss_pred HHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 669 KALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 669 ~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+.+.+.-.++++++++++||.. ..+..+++.+.+.+||.+
T Consensus 317 ~~l~~~ip~~~l~~i~~aGH~~-~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 317 SSLPSQLPNVTLYVLEGVGHCP-HDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred HhhhccCCceEEEEcCCCCCCc-cccCHHHHHHHHHHHHHh
Confidence 5555443467999999999974 456788899999999976
|
|
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=7e-15 Score=148.45 Aligned_cols=213 Identities=20% Similarity=0.175 Sum_probs=115.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc------------ccc----hhhhHHHhhC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR------------GIL----NLSIQYWTSR 520 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~------------~~~----~~~~~~la~~ 520 (729)
+.+.+.|... ++..+.++++.|.+ ..++.|+||++||....... ..+ ......|+.+
T Consensus 87 ~~EKv~f~~~-p~~~vpaylLvPd~------~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~ 159 (390)
T PF12715_consen 87 TREKVEFNTT-PGSRVPAYLLVPDG------AKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR 159 (390)
T ss_dssp EEEEEEE--S-TTB-EEEEEEEETT--------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred EEEEEEEEcc-CCeeEEEEEEecCC------CCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence 4578888887 89999999999987 24678999999984321100 001 1256789999
Q ss_pred CcEEEEecCCCCCCCchhH----------HH------hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHH
Q 004816 521 GWAFVDVNYGGSTGYGREF----------RE------RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 584 (729)
Q Consensus 521 G~~v~~~d~rGs~g~g~~~----------~~------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~ 584 (729)
||.|+++|..|-|..+..- .. .....+......|.+.++|||..++.+|++||+++|+|+||+.
T Consensus 160 GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 160 GYVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp TSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CCEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence 9999999998765543210 00 0111222334667778999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEEEeccccChhHHhhhc-----------chhhhhhhhhhcCChhhhhhcCcccccCC-CCCCEEEEE
Q 004816 585 TLAALAFRDTFKAGASLYGVADLSMLRAET-----------HKFESRYIDNLVGSEKDYYEKSPINFVDK-FSCPIILFQ 652 (729)
Q Consensus 585 a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~PvL~i~ 652 (729)
++++++-.++++++|+.+-+.....-.... ......++..++...+.-. -+.- ...|+|++.
T Consensus 240 a~~LaALDdRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~Pd------IasliAPRPll~~n 313 (390)
T PF12715_consen 240 AWWLAALDDRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPD------IASLIAPRPLLFEN 313 (390)
T ss_dssp HHHHHHH-TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHH------HHHTTTTS-EEESS
T ss_pred HHHHHHcchhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHH------HHHHhCCCcchhhc
Confidence 999999778999998876654433211000 0111122222221111000 0111 136899999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
|..|..+|. .++-|+.. .++.+++++.||.
T Consensus 314 G~~Dklf~i--V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 314 GGKDKLFPI--VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp -B-HHHHHH--HHHHHHHT-T-GGGEEE---GG
T ss_pred CCcccccHH--HHHHHHhc-CCCcceEEeeccc
Confidence 999987654 33333332 2334688888885
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=144.89 Aligned_cols=212 Identities=17% Similarity=0.169 Sum_probs=125.0
Q ss_pred CCEEEEEcCCCCCCccccchhhhHH-------HhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHH-HHHH
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQY-------WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCA-TFLV 563 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~-------la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~ 563 (729)
.|.||++||.+.+...+.-...... +.+.+|.|+++|+||.|.+...- ............+++...+ ..+.
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~-~~~~~~~~~~~~~~~a~~~~~~l~ 147 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPS-DGLRAAFPRYDYDDMVEAQYRLVT 147 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCC-cCCCCCCCcccHHHHHHHHHHHHH
Confidence 4779999998654333210122222 23578999999999876542110 0000001113355555433 3343
Q ss_pred hCCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEEeccccC--------hhHH-h---hhcc-----h------hh
Q 004816 564 GSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD--------LSML-R---AETH-----K------FE 618 (729)
Q Consensus 564 ~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d--------~~~~-~---~~~~-----~------~~ 618 (729)
+.. +.+++. |+||||||++|+.++. +|++++++|+.++... .... . .... . ..
T Consensus 148 ~~l--gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (360)
T PRK06489 148 EGL--GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSL 225 (360)
T ss_pred Hhc--CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHH
Confidence 432 335774 8999999999999998 9999999998876421 0000 0 0000 0 00
Q ss_pred h----h------------------------hhhhhcC-----Chhhhh-------hcCcccccCCCCCCEEEEEeCCCCC
Q 004816 619 S----R------------------------YIDNLVG-----SEKDYY-------EKSPINFVDKFSCPIILFQGLEDKV 658 (729)
Q Consensus 619 ~----~------------------------~~~~~~~-----~~~~~~-------~~sp~~~~~~i~~PvL~i~G~~D~~ 658 (729)
. . +...... ....+. ..+....+.+|++|+|+++|++|.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~ 305 (360)
T PRK06489 226 KRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDER 305 (360)
T ss_pred HHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcc
Confidence 0 0 0000000 001110 1122234678999999999999999
Q ss_pred CChHHH--HHHHHHHHhCCCCEEEEEECCC----CcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 659 VPPDQA--RKIYKALKENGLPVALVEYEGE----QHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 659 vp~~~~--~~~~~~l~~~g~~~~~~~~~~~----gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+|++.+ +++.+.+. ..+++++|++ ||... +....+.+.+.+|+.++-+
T Consensus 306 ~p~~~~~~~~la~~ip----~a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~~ 359 (360)
T PRK06489 306 NPPETGVMEAALKRVK----HGRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQVPK 359 (360)
T ss_pred cChhhHHHHHHHHhCc----CCeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhccc
Confidence 999865 56666664 4589999996 99764 5788888999999987543
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=145.01 Aligned_cols=209 Identities=14% Similarity=0.128 Sum_probs=125.6
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHH-HHHHH-HHHHHhCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVN-DCCSC-ATFLVGSGK 567 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~-D~~~~-~~~l~~~~~ 567 (729)
..|+||++||.++.. ..|...+..|++ +|.|+++|+||.|...+.. ..... .+.. .+... .+++...
T Consensus 104 ~~p~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~-----~~~~~~~~~~~~~~~~i~~~~~~l-- 173 (402)
T PLN02894 104 DAPTLVMVHGYGASQ--GFFFRNFDALAS-RFRVIAIDQLGWGGSSRPD-----FTCKSTEETEAWFIDSFEEWRKAK-- 173 (402)
T ss_pred CCCEEEEECCCCcch--hHHHHHHHHHHh-CCEEEEECCCCCCCCCCCC-----cccccHHHHHHHHHHHHHHHHHHc--
Confidence 458899999985432 334445566655 5999999999877654321 00000 0111 12222 2333322
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh---H----Hhhhcc------------------------
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---M----LRAETH------------------------ 615 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~---~----~~~~~~------------------------ 615 (729)
+.+++.++||||||++++.++. +|++++++|+.+|..-.. . ......
T Consensus 174 -~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (402)
T PLN02894 174 -NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGL 252 (402)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhc
Confidence 4568999999999999999888 999999999887642110 0 000000
Q ss_pred -----hhhhhhhhh----h-----cC--Chhhh--------------------------hhcCcc-cccCCCCCCEEEEE
Q 004816 616 -----KFESRYIDN----L-----VG--SEKDY--------------------------YEKSPI-NFVDKFSCPIILFQ 652 (729)
Q Consensus 616 -----~~~~~~~~~----~-----~~--~~~~~--------------------------~~~sp~-~~~~~i~~PvL~i~ 652 (729)
.....+... . .. ..+.+ ....+. ..+.++++|+|+++
T Consensus 253 gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~ 332 (402)
T PLN02894 253 GPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIY 332 (402)
T ss_pred cchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEE
Confidence 000000000 0 00 00000 001222 33677899999999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCCCC
Q 004816 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFD 715 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~ 715 (729)
|++|.+++ ....++.+.+ +.++++++++++||.. ..++...+.+.+.+|++.++.+.+
T Consensus 333 G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~-~~E~P~~f~~~l~~~~~~~~~~~~ 390 (402)
T PLN02894 333 GRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFV-FLDNPSGFHSAVLYACRKYLSPDR 390 (402)
T ss_pred eCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCee-eccCHHHHHHHHHHHHHHhccCCc
Confidence 99998664 5555544443 3457899999999964 446778899999999999998543
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-13 Score=145.26 Aligned_cols=234 Identities=16% Similarity=0.178 Sum_probs=141.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-----------cchhhh---HHHhhCCcEEEEecCCCC-
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----------ILNLSI---QYWTSRGWAFVDVNYGGS- 532 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-----------~~~~~~---~~la~~G~~v~~~d~rGs- 532 (729)
+|.++.+..+-..+ .+..|.||++||.+.+.... .|...+ ..+...+|.|+++|++|.
T Consensus 31 ~~~~~~y~~~G~~~-------~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~ 103 (379)
T PRK00175 31 PPVELAYETYGTLN-------ADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGC 103 (379)
T ss_pred CCceEEEEeccccC-------CCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCC
Confidence 45566665554321 12348899999986654321 133322 134367899999999983
Q ss_pred CCC-chhHHHh-----hccCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 533 TGY-GREFRER-----LLGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 533 ~g~-g~~~~~~-----~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
++. +.+.... ...++....++|+.+.+..+++.. +.++ +.++||||||.+++.++. +|++++++|++++.
T Consensus 104 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 181 (379)
T PRK00175 104 KGSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASS 181 (379)
T ss_pred CCCCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCC
Confidence 222 2110000 000111244667666666666553 3356 589999999999999988 99999999998865
Q ss_pred cChhH----Hh-------hhc-------------ch--------------------hhhhhhhhh---------------
Q 004816 605 ADLSM----LR-------AET-------------HK--------------------FESRYIDNL--------------- 625 (729)
Q Consensus 605 ~d~~~----~~-------~~~-------------~~--------------------~~~~~~~~~--------------- 625 (729)
..... +. ... .. +...+....
T Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~ 261 (379)
T PRK00175 182 ARLSAQNIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQV 261 (379)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchH
Confidence 42110 00 000 00 000000000
Q ss_pred -----------c--CChhhh-------hhcC--------cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCC
Q 004816 626 -----------V--GSEKDY-------YEKS--------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 677 (729)
Q Consensus 626 -----------~--~~~~~~-------~~~s--------p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~ 677 (729)
. -+...+ ...+ -...+++|++|+|+++|++|..+|++.++++.+.+...+..
T Consensus 262 ~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~ 341 (379)
T PRK00175 262 ESYLRYQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGAD 341 (379)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCC
Confidence 0 000000 0000 11235688999999999999999999999999999987777
Q ss_pred EEEEEEC-CCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 678 VALVEYE-GEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 678 ~~~~~~~-~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+++++++ ++||... .+...++.+.+.+||.+.-
T Consensus 342 ~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~~ 375 (379)
T PRK00175 342 VSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERAA 375 (379)
T ss_pred eEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhhh
Confidence 7888885 8999743 3556678888999998754
|
|
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-13 Score=132.74 Aligned_cols=208 Identities=17% Similarity=0.150 Sum_probs=130.0
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~ 568 (729)
...|+|+++||.|.....+ +.....|+++||.|+++|+||.|.+... .....+.. ....|+.+.++.|-
T Consensus 42 ~~gP~illlHGfPe~wysw--r~q~~~la~~~~rviA~DlrGyG~Sd~P---~~~~~Yt~~~l~~di~~lld~Lg----- 111 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESWYSW--RHQIPGLASRGYRVIAPDLRGYGFSDAP---PHISEYTIDELVGDIVALLDHLG----- 111 (322)
T ss_pred CCCCEEEEEccCCccchhh--hhhhhhhhhcceEEEecCCCCCCCCCCC---CCcceeeHHHHHHHHHHHHHHhc-----
Confidence 3469999999998765444 4456789999999999999975542221 11111110 12555666666553
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC---hhHHhhh---------------cchhhh----------
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSMLRAE---------------THKFES---------- 619 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d---~~~~~~~---------------~~~~~~---------- 619 (729)
-+|+.++||++|+.+|..++. +|+++++.|+.+.... ....... ....+.
T Consensus 112 -~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~~ 190 (322)
T KOG4178|consen 112 -LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEML 190 (322)
T ss_pred -cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHHh
Confidence 479999999999999999998 9999999998875433 0000000 000000
Q ss_pred --h----------------------hhhhh-------------cC--C-hhhhhhcCc--ccccCCCCCCEEEEEeCCCC
Q 004816 620 --R----------------------YIDNL-------------VG--S-EKDYYEKSP--INFVDKFSCPIILFQGLEDK 657 (729)
Q Consensus 620 --~----------------------~~~~~-------------~~--~-~~~~~~~sp--~~~~~~i~~PvL~i~G~~D~ 657 (729)
. ..+.- .+ + .+.+..+.+ .-...++++|++++.|.+|.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D~ 270 (322)
T KOG4178|consen 191 VKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLDP 270 (322)
T ss_pred HHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCcc
Confidence 0 00000 00 0 111122221 22355788999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 658 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 658 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+.++....+.+++.-- .-.+.++++|+||. ...+...+..+.++.|+++..
T Consensus 271 v~~~p~~~~~~rk~vp--~l~~~vv~~~~gH~-vqqe~p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 271 VLPYPIFGELYRKDVP--RLTERVVIEGIGHF-VQQEKPQEVNQAILGFINSFS 321 (322)
T ss_pred cccchhHHHHHHHhhc--cccceEEecCCccc-ccccCHHHHHHHHHHHHHhhc
Confidence 9887633333333221 12378899999995 455778899999999998753
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=138.14 Aligned_cols=198 Identities=16% Similarity=0.161 Sum_probs=120.7
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHH-HHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ 571 (729)
|+||++||.+++ ...|......|+ +||.|+.+|+||.|..... ......+.+++... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~--~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGS--GADWQALIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCc--hhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 679999997443 345667778887 8999999999986654321 01111234444444 5555444 2457
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh-----------------h-cchhhhhhhhh-h------
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA-----------------E-THKFESRYIDN-L------ 625 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~-----------------~-~~~~~~~~~~~-~------ 625 (729)
++.++|||+||.+++.++. +|+.++++++.++...+..... . ...+...+... .
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeeccc
Confidence 8999999999999999998 8999999999887543211000 0 00000000000 0
Q ss_pred cC--------------Ch----hhh------hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEE
Q 004816 626 VG--------------SE----KDY------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 681 (729)
Q Consensus 626 ~~--------------~~----~~~------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 681 (729)
.. .. ..+ ...++...+.++++|+|+++|++|..++ +. .+.+.+....++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~----~~~~~~~~~~~~~~ 225 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QI----AKEMQKLLPNLTLV 225 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HH----HHHHHhcCCCCcEE
Confidence 00 00 000 0012223356789999999999997652 22 33344444467899
Q ss_pred EECCCCcccCCcccHHHHHHHHHHHH
Q 004816 682 EYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 682 ~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
++|++||.+.. +...+..+.+.+|+
T Consensus 226 ~~~~~gH~~~~-e~~~~~~~~i~~~l 250 (251)
T TIGR03695 226 IIANAGHNIHL-ENPEAFAKILLAFL 250 (251)
T ss_pred EEcCCCCCcCc-cChHHHHHHHHHHh
Confidence 99999997543 44567777777776
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=138.86 Aligned_cols=195 Identities=13% Similarity=0.078 Sum_probs=122.2
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
..|.||++||.+.+ ...|...+..|.+ .|.|+++|+||.|.+.. +.....+++. +.+.+. ..
T Consensus 12 g~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~---------~~~~~~~~~~---~~l~~~---~~ 73 (256)
T PRK10349 12 GNVHLVLLHGWGLN--AEVWRCIDEELSS-HFTLHLVDLPGFGRSRG---------FGALSLADMA---EAVLQQ---AP 73 (256)
T ss_pred CCCeEEEECCCCCC--hhHHHHHHHHHhc-CCEEEEecCCCCCCCCC---------CCCCCHHHHH---HHHHhc---CC
Confidence 34569999997433 3456777777765 49999999997654321 1112234433 344433 24
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh--------------HHhhh----cchhhhhhhhh-hcCC--
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--------------MLRAE----THKFESRYIDN-LVGS-- 628 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~--------------~~~~~----~~~~~~~~~~~-~~~~-- 628 (729)
+++.++|||+||++++.++. +|++++++|+.++..... .+... .......++.. ....
T Consensus 74 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
T PRK10349 74 DKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTET 153 (256)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCch
Confidence 78999999999999999988 899999999887632110 00000 00000011000 0000
Q ss_pred -------------------h-------hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 629 -------------------E-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 629 -------------------~-------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
. ..+...+....+.++++|+|+++|++|.++|.+.+..+.+.+. ..++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~ 229 (256)
T PRK10349 154 ARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYI 229 (256)
T ss_pred HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCC----CCeEEE
Confidence 0 0011122223467789999999999999999887776666654 458999
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+|++||.... ++...+.+.+.+|-.
T Consensus 230 i~~~gH~~~~-e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 230 FAKAAHAPFI-SHPAEFCHLLVALKQ 254 (256)
T ss_pred eCCCCCCccc-cCHHHHHHHHHHHhc
Confidence 9999997543 666777777777643
|
|
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=141.60 Aligned_cols=220 Identities=15% Similarity=0.084 Sum_probs=131.0
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH
Q 004816 462 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541 (729)
Q Consensus 462 ~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~ 541 (729)
.+... +|.++++..+.+ .+.+.||++||++++... ......+...+|.|+++|+||.|.+...
T Consensus 8 ~~~~~-~~~~l~y~~~g~----------~~~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~--- 70 (306)
T TIGR01249 8 YLNVS-DNHQLYYEQSGN----------PDGKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRGCGKSTPH--- 70 (306)
T ss_pred eEEcC-CCcEEEEEECcC----------CCCCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCCCCCCCCC---
Confidence 44454 677887544321 112458999998655432 1233445567999999999976543211
Q ss_pred hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh----hH-------
Q 004816 542 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----SM------- 609 (729)
Q Consensus 542 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~----~~------- 609 (729)
.. ......+|+.+.+..+.+.. +.+++.++||||||++++.++. +|++++++|+.++.... ..
T Consensus 71 ~~---~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 145 (306)
T TIGR01249 71 AC---LEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGAS 145 (306)
T ss_pred CC---cccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchh
Confidence 00 01123456666666665542 3468999999999999999988 99999999988654311 00
Q ss_pred ---------Hhhhc------chhhhhhhhhhcC-C--------------------------------hh---hhhh----
Q 004816 610 ---------LRAET------HKFESRYIDNLVG-S--------------------------------EK---DYYE---- 634 (729)
Q Consensus 610 ---------~~~~~------~~~~~~~~~~~~~-~--------------------------------~~---~~~~---- 634 (729)
+.... ..+...+...... . +. .+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (306)
T TIGR01249 146 MIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENH 225 (306)
T ss_pred hhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHh
Confidence 00000 0000000000000 0 00 0000
Q ss_pred ------cC-----cccccCCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHH
Q 004816 635 ------KS-----PINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQ 702 (729)
Q Consensus 635 ------~s-----p~~~~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~ 702 (729)
.. -...+.++ ++|+|++||++|.++|++.+.++++.+. ..++++++++||....+ ..++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~----~~~~~ 297 (306)
T TIGR01249 226 YFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFP----EAELKVTNNAGHSAFDP----NNLAA 297 (306)
T ss_pred HHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCCCCCh----HHHHH
Confidence 00 01234556 5899999999999999999988888765 45899999999986543 34566
Q ss_pred HHHHHHHHh
Q 004816 703 QMVFFARVV 711 (729)
Q Consensus 703 ~~~fl~~~l 711 (729)
+.+|+..+|
T Consensus 298 i~~~~~~~~ 306 (306)
T TIGR01249 298 LVHALETYL 306 (306)
T ss_pred HHHHHHHhC
Confidence 677776653
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-14 Score=139.45 Aligned_cols=192 Identities=16% Similarity=0.119 Sum_probs=120.8
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+.. ...|...+..|+ .+|.|+++|+||.|..... ...+.+ ..++.+.+. . .++
T Consensus 5 ~~iv~~HG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~---~~~~~~~~~--~-~~~ 66 (245)
T TIGR01738 5 VHLVLIHGWGMN--AEVFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLA---DAAEAIAAQ--A-PDP 66 (245)
T ss_pred ceEEEEcCCCCc--hhhHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHH---HHHHHHHHh--C-CCC
Confidence 679999997433 345666667775 4799999999986653211 112233 344444443 2 268
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh---HH--------hhh----c----chhhhhhhh-hhcC----
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---ML--------RAE----T----HKFESRYID-NLVG---- 627 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~---~~--------~~~----~----~~~~~~~~~-~~~~---- 627 (729)
+.++|||+||++++.++. +|++++++|+.++...+. .+ ... . ......+.. ...+
T Consensus 67 ~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (245)
T TIGR01738 67 AIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTA 146 (245)
T ss_pred eEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999988 899999999886643210 00 000 0 000000000 0000
Q ss_pred ---------------Ch--h-------hhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE
Q 004816 628 ---------------SE--K-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 683 (729)
Q Consensus 628 ---------------~~--~-------~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 683 (729)
.+ . .+...+....+.++++|+|+++|++|..+|++....+.+.+. +++++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~ 222 (245)
T TIGR01738 147 RQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYIF 222 (245)
T ss_pred chHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEEe
Confidence 00 0 000111123467899999999999999999988877776654 5689999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHH
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
+++||.... +...++.+.+.+|+
T Consensus 223 ~~~gH~~~~-e~p~~~~~~i~~fi 245 (245)
T TIGR01738 223 AKAAHAPFL-SHAEAFCALLVAFK 245 (245)
T ss_pred CCCCCCccc-cCHHHHHHHHHhhC
Confidence 999997544 56677777777774
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=130.67 Aligned_cols=191 Identities=19% Similarity=0.187 Sum_probs=118.4
Q ss_pred EEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCCCCch--hHHHhhccCCCc
Q 004816 473 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGR--EFRERLLGRWGI 549 (729)
Q Consensus 473 ~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~--~~~~~~~~~~~~ 549 (729)
.+.+|.|++. +.++.|+||++||.........-......+++ +||+|+.|+......... .|.. .....+.
T Consensus 2 ~Y~lYvP~~~-----~~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~ 75 (220)
T PF10503_consen 2 SYRLYVPPGA-----PRGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGG 75 (220)
T ss_pred cEEEecCCCC-----CCCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCc
Confidence 4678888762 13468999999997443321111112234555 599999998543211112 2222 2223344
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhh-hcC
Q 004816 550 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDN-LVG 627 (729)
Q Consensus 550 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~-~~~ 627 (729)
.+...+..+++++..+..+|++||.+.|+|.||+|+..++. +|++|.++...+|..--... ...... ..+.. ...
T Consensus 76 ~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~-~~~~a~--~~m~~g~~~ 152 (220)
T PF10503_consen 76 GDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAA-SGASAL--SAMRSGPRP 152 (220)
T ss_pred cchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccccccc-CcccHH--HHhhCCCCC
Confidence 56777889999999999999999999999999999999987 99999999988875321100 000000 00000 000
Q ss_pred Chhh-hhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC
Q 004816 628 SEKD-YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 674 (729)
Q Consensus 628 ~~~~-~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~ 674 (729)
.+.. .......- ..-..|++++||+.|..|.+.++.++.+++...
T Consensus 153 ~p~~~~~a~~~~g--~~~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 153 APAAAWGARSDAG--AYPGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred ChHHHHHhhhhcc--CCCCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 1110 00010000 111359999999999999999999999888763
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-13 Score=142.57 Aligned_cols=206 Identities=14% Similarity=0.159 Sum_probs=130.5
Q ss_pred CCEEEEEcCCCCCCcc---ccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 492 PPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~---~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
.| ||++||-...... .....++.+|+++||.|+++|+||.+. +.. ...+.....+|+.++++++.++.
T Consensus 63 ~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~---s~~---~~~~~d~~~~~~~~~v~~l~~~~-- 133 (350)
T TIGR01836 63 TP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDR---ADR---YLTLDDYINGYIDKCVDYICRTS-- 133 (350)
T ss_pred Cc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCH---HHh---cCCHHHHHHHHHHHHHHHHHHHh--
Confidence 35 8888884221111 123467889999999999999986432 111 11111111355888899998874
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh------h-h------------cc------------h
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR------A-E------------TH------------K 616 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~------~-~------------~~------------~ 616 (729)
+.+++.++|||+||.+++.++. +|++++++|+.++..++.... . . .. .
T Consensus 134 ~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p 213 (350)
T TIGR01836 134 KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKP 213 (350)
T ss_pred CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCc
Confidence 3468999999999999998887 899999999998876542110 0 0 00 0
Q ss_pred ---hhhhhhh--hhcCChh---hh--------------------------hhcCc----------ccccCCCCCCEEEEE
Q 004816 617 ---FESRYID--NLVGSEK---DY--------------------------YEKSP----------INFVDKFSCPIILFQ 652 (729)
Q Consensus 617 ---~~~~~~~--~~~~~~~---~~--------------------------~~~sp----------~~~~~~i~~PvL~i~ 652 (729)
....+.. ....+++ .| ..... ...+.++++|+|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~ 293 (350)
T TIGR01836 214 FSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIY 293 (350)
T ss_pred chhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEe
Confidence 0000000 0001110 00 00000 112556889999999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc-c-CCcccHHHHHHHHHHHHHH
Q 004816 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-F-RKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~-~~~~~~~~~~~~~~~fl~~ 709 (729)
|++|.++|++.+..+++.+.. .+++++++++ ||. + ..+....+.+..+.+|+.+
T Consensus 294 G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 294 AERDHLVPPDASKALNDLVSS--EDYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred cCCCCcCCHHHHHHHHHHcCC--CCeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHh
Confidence 999999999999999888764 3568888885 665 2 3334467888999999876
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=132.11 Aligned_cols=208 Identities=21% Similarity=0.280 Sum_probs=136.2
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCC-CEEEEEcCCCCCCccccch------hhhHHHhhCCcEEEEecCCCC
Q 004816 460 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKP-PLLVKSHGGPTSEARGILN------LSIQYWTSRGWAFVDVNYGGS 532 (729)
Q Consensus 460 ~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~-P~vv~~hGg~~~~~~~~~~------~~~~~la~~G~~v~~~d~rGs 532 (729)
.++|.....|.++.+.+|.|++.. +++++ |+||++||++.......-. ..+-..-+-++-|++|.|.-
T Consensus 162 a~~f~d~~tgneLkYrly~Pkdy~----pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~- 236 (387)
T COG4099 162 AVEFYDESTGNELKYRLYTPKDYA----PDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNP- 236 (387)
T ss_pred heEeeccccCceeeEEEecccccC----CCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccccc-
Confidence 344444337899999999998844 46776 9999999975432222100 01111112245667766531
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHH-HHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 610 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~ 610 (729)
-+.... ............+++ -|.+++.+|.+||-++|.|+||+.++.++. +|+.|++++.++|-.|-..
T Consensus 237 -----if~d~e--~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v~- 308 (387)
T COG4099 237 -----IFADSE--EKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRVY- 308 (387)
T ss_pred -----cccccc--cccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchhh-
Confidence 000000 011122444555555 777889999999999999999999999988 9999999999998655211
Q ss_pred hhhcchhhhhhhhhhcCChhhhhhcCcccccCCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC---CC
Q 004816 611 RAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE---GE 686 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~---~~ 686 (729)
+++.+ +.|+.++|+.+|+++|.+++.-+++.|+..+.++.+..|. -.
T Consensus 309 -----------------------------lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~~g~~~ 359 (387)
T COG4099 309 -----------------------------LVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFLEGTTV 359 (387)
T ss_pred -----------------------------hhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhhhcccc
Confidence 11222 4799999999999999999999999999998888777766 22
Q ss_pred CcccCCcccHHH--HHHHHHHHHHH
Q 004816 687 QHGFRKAENIKF--TLEQQMVFFAR 709 (729)
Q Consensus 687 gH~~~~~~~~~~--~~~~~~~fl~~ 709 (729)
.|+......+.. -...+++|+-+
T Consensus 360 ~eG~d~~g~w~atyn~~eaieWLl~ 384 (387)
T COG4099 360 LEGVDHSGVWWATYNDAEAIEWLLK 384 (387)
T ss_pred ccccCCCCcceeecCCHHHHHHHHh
Confidence 344333222222 22356677654
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=129.72 Aligned_cols=209 Identities=14% Similarity=0.206 Sum_probs=132.2
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc--cccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~--~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+.+... ...+.++++.|.+ .++.|+||++||...... ...+...+..|+++||.|+.+|+||.|.....
T Consensus 3 ~~l~~~--~g~~~~~~~~p~~-------~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~ 73 (266)
T TIGR03101 3 FFLDAP--HGFRFCLYHPPVA-------VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGD 73 (266)
T ss_pred EEecCC--CCcEEEEEecCCC-------CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCc
Confidence 455554 4446677787754 234689999999743222 22345567889999999999999986654322
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchh
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKF 617 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~ 617 (729)
... ..+. ...+|+..+++++.+.+ .++++++|||+||.+++.++. +|++++++|+.+|+.+...+....-.+
T Consensus 74 ~~~---~~~~-~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl 146 (266)
T TIGR03101 74 FAA---ARWD-VWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRL 146 (266)
T ss_pred ccc---CCHH-HHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHH
Confidence 111 1111 12688999999998763 468999999999999998887 899999999999988765544331111
Q ss_pred hh-------h-------hhhhhc--------C---Ch---hhhhhcCcccccCCCCCCEEEEEeCCC-CCCChHHHHHHH
Q 004816 618 ES-------R-------YIDNLV--------G---SE---KDYYEKSPINFVDKFSCPIILFQGLED-KVVPPDQARKIY 668 (729)
Q Consensus 618 ~~-------~-------~~~~~~--------~---~~---~~~~~~sp~~~~~~i~~PvL~i~G~~D-~~vp~~~~~~~~ 668 (729)
.. . ....+. | .+ ..+...+...... -..++|++.-..+ .--......++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (266)
T TIGR03101 147 RLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVP-KNCPVHWFEVRPEEGATLSPVFSRLG 225 (266)
T ss_pred HHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCC-CCCceEEEEeccccCCCCCHHHHHHH
Confidence 00 0 000000 0 00 0111111110111 1456788766432 223345678899
Q ss_pred HHHHhCCCCEEEEEECCC
Q 004816 669 KALKENGLPVALVEYEGE 686 (729)
Q Consensus 669 ~~l~~~g~~~~~~~~~~~ 686 (729)
+.+++.|+.++...|+|.
T Consensus 226 ~~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 226 EQWVQSGVEVTVDLVPGP 243 (266)
T ss_pred HHHHHcCCeEeeeecCCc
Confidence 999999999999999988
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-12 Score=132.03 Aligned_cols=243 Identities=17% Similarity=0.191 Sum_probs=158.6
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
-+...++.+ ||..+...+..+...... +.....|+||++||-.++........++....++||.|+++|.||.+|.--
T Consensus 93 y~Reii~~~-DGG~~~lDW~~~~~~~~~-~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~L 170 (409)
T KOG1838|consen 93 YTREIIKTS-DGGTVTLDWVENPDSRCR-TDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKL 170 (409)
T ss_pred ceeEEEEeC-CCCEEEEeeccCcccccC-CCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCcc
Confidence 355556666 888888777766552111 123467999999998777777666778888889999999999999665332
Q ss_pred hHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccccChh---HHh
Q 004816 538 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVADLS---MLR 611 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~d~~---~~~ 611 (729)
.-.. -+.....+|+.++++++.++.. ..++.++|.|+||.+...++. ....+.++++++-..|.. ...
T Consensus 171 tTpr----~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~ 244 (409)
T KOG1838|consen 171 TTPR----LFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSI 244 (409)
T ss_pred CCCc----eeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHH
Confidence 2111 1122337999999999999843 458999999999999988886 222355555555444431 110
Q ss_pred hh-----------------------------------------cchhhhhhhhhhcC---ChhhhhhcCcccccCCCCCC
Q 004816 612 AE-----------------------------------------THKFESRYIDNLVG---SEKDYYEKSPINFVDKFSCP 647 (729)
Q Consensus 612 ~~-----------------------------------------~~~~~~~~~~~~~~---~~~~~~~~sp~~~~~~i~~P 647 (729)
.. ...+...+.....| -.+.|...|+..++++|++|
T Consensus 245 ~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aSs~~~v~~I~VP 324 (409)
T KOG1838|consen 245 ETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKASSSNYVDKIKVP 324 (409)
T ss_pred hcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcchhhhccccccc
Confidence 00 00011111111111 13567888999999999999
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc-cCCc--ccHHHHHHH-HHHHHHHHh
Q 004816 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-FRKA--ENIKFTLEQ-QMVFFARVV 711 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~~~~--~~~~~~~~~-~~~fl~~~l 711 (729)
+|+|++.+|+++|.+ +.-. +..+ .+..+-+++-.-+||- |... .+...++++ +.+||....
T Consensus 325 ~L~ina~DDPv~p~~-~ip~-~~~~-~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~~ 389 (409)
T KOG1838|consen 325 LLCINAADDPVVPEE-AIPI-DDIK-SNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNAI 389 (409)
T ss_pred EEEEecCCCCCCCcc-cCCH-HHHh-cCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHHH
Confidence 999999999999874 2222 2222 3457788888888894 3221 144556666 788887765
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-13 Score=127.46 Aligned_cols=186 Identities=21% Similarity=0.179 Sum_probs=127.4
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH-hhccCCCc----ccHHHHHHHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE-RLLGRWGI----VDVNDCCSCATFLV 563 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~-~~~~~~~~----~~~~D~~~~~~~l~ 563 (729)
+...|+||++||.+ .+...+-...+.... .+.++.+.-+-.-..+..|.. ...+.+-. ...+.+.+.++.+.
T Consensus 15 ~p~~~~iilLHG~G--gde~~~~~~~~~~~P-~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~ 91 (207)
T COG0400 15 DPAAPLLILLHGLG--GDELDLVPLPELILP-NATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELA 91 (207)
T ss_pred CCCCcEEEEEecCC--CChhhhhhhhhhcCC-CCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHH
Confidence 44568999999973 344444443333333 355555543322111222111 11111111 11344556667777
Q ss_pred hCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccC
Q 004816 564 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 642 (729)
Q Consensus 564 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 642 (729)
++..+|.+|++++|+|.|+.+++.++. ++..++++++.+|..-+... ....
T Consensus 92 ~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~----------------------------~~~~ 143 (207)
T COG0400 92 EEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE----------------------------LLPD 143 (207)
T ss_pred HHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc----------------------------cccc
Confidence 777889999999999999999999987 99999999999986533210 0011
Q ss_pred CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 643 ~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
.-.+|+|++||+.|++||...+.++.+.|++.|.+++.++++ .||.+.. +.++.+.+|+.+.+
T Consensus 144 ~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~-----e~~~~~~~wl~~~~ 206 (207)
T COG0400 144 LAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIPP-----EELEAARSWLANTL 206 (207)
T ss_pred cCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCCH-----HHHHHHHHHHHhcc
Confidence 225799999999999999999999999999999999999999 7998753 55667777887754
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-13 Score=143.21 Aligned_cols=197 Identities=13% Similarity=0.157 Sum_probs=122.8
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.||++||.++. ...|......|.. +|.|+++|++|.|.+... ....+.+++.+.+..+++. ++..
T Consensus 131 ~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~~~ 197 (371)
T PRK14875 131 GTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LGIE 197 (371)
T ss_pred CCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCCc
Confidence 4789999997443 3445555666654 599999999987654321 1123356666666666555 4557
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh----HH----hhh--cchh--------------hhhhhhhhc
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS----ML----RAE--THKF--------------ESRYIDNLV 626 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~----~~----~~~--~~~~--------------~~~~~~~~~ 626 (729)
++.++|||+||++++.++. +|++++++|+.++..... .+ ... ...+ ...+.....
T Consensus 198 ~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (371)
T PRK14875 198 RAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVEDLL 277 (371)
T ss_pred cEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHHHH
Confidence 8999999999999998887 888999999988753211 00 000 0000 000000000
Q ss_pred -----CC-hhhh------------hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 627 -----GS-EKDY------------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 627 -----~~-~~~~------------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
.. ...+ ...+....+.++++|+|+++|++|..+|++++..+. ..+++++++++||
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~~gH 350 (371)
T PRK14875 278 KYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPGAGH 350 (371)
T ss_pred HHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCCCCC
Confidence 00 0000 001122246678999999999999999987765432 2468899999999
Q ss_pred ccCCcccHHHHHHHHHHHHHH
Q 004816 689 GFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 689 ~~~~~~~~~~~~~~~~~fl~~ 709 (729)
... -++.....+.+.+||++
T Consensus 351 ~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 351 MPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred Chh-hhCHHHHHHHHHHHhcc
Confidence 754 34556677777777764
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=133.18 Aligned_cols=198 Identities=17% Similarity=0.111 Sum_probs=121.1
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+. ....|......|. ++|.|+++|+||.|.++... . .....+++.+.+..+++.. +.++
T Consensus 35 ~~iv~lHG~~~--~~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~------~-~~~~~~~~~~~~~~~~~~~--~~~~ 102 (286)
T PRK03204 35 PPILLCHGNPT--WSFLYRDIIVALR-DRFRCVAPDYLGFGLSERPS------G-FGYQIDEHARVIGEFVDHL--GLDR 102 (286)
T ss_pred CEEEEECCCCc--cHHHHHHHHHHHh-CCcEEEEECCCCCCCCCCCC------c-cccCHHHHHHHHHHHHHHh--CCCC
Confidence 67999999853 2234555666665 46999999999876543211 0 0123677777777776653 4478
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-----HHhh----hcch---------hhhhhhhhhc--C-Ch-
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-----MLRA----ETHK---------FESRYIDNLV--G-SE- 629 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-----~~~~----~~~~---------~~~~~~~~~~--~-~~- 629 (729)
+.++|||+||.+++.++. +|++++++|+.++..-.. .... .... +...++.... . ..
T Consensus 103 ~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (286)
T PRK03204 103 YLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGTEHRPSSA 182 (286)
T ss_pred EEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccccCCCCHH
Confidence 999999999999999887 999999999876643100 0000 0000 0000000000 0 00
Q ss_pred --hhhh-----------------hc---Cc-ccc----cC--CCCCCEEEEEeCCCCCCChH-HHHHHHHHHHhCCCCEE
Q 004816 630 --KDYY-----------------EK---SP-INF----VD--KFSCPIILFQGLEDKVVPPD-QARKIYKALKENGLPVA 679 (729)
Q Consensus 630 --~~~~-----------------~~---sp-~~~----~~--~i~~PvL~i~G~~D~~vp~~-~~~~~~~~l~~~g~~~~ 679 (729)
..+. .. .+ +.. +. .+++|+|+++|++|..+++. ..+.+.+.+. ..+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip----~~~ 258 (286)
T PRK03204 183 VMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFP----DHV 258 (286)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcC----CCe
Confidence 0000 00 00 000 11 12799999999999988665 3555555554 358
Q ss_pred EEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 680 LVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 680 ~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
+++++++||... .+..+++.+.+.+||
T Consensus 259 ~~~i~~aGH~~~-~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 259 LVELPNAKHFIQ-EDAPDRIAAAIIERF 285 (286)
T ss_pred EEEcCCCccccc-ccCHHHHHHHHHHhc
Confidence 999999999754 366778888888886
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=138.82 Aligned_cols=196 Identities=17% Similarity=0.215 Sum_probs=121.0
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcc-cHHHHHHHHHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~ 571 (729)
|.||++||.+.+ ...|......|+ .+|.|+++|++|.|.+..... .+... ..+|+.+.++.+. .+
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~~~-----~~~~~~~a~~l~~~i~~~~------~~ 152 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELA-KKYKVYALDLLGFGWSDKALI-----EYDAMVWRDQVADFVKEVV------KE 152 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCCCCCCCCccc-----ccCHHHHHHHHHHHHHHhc------cC
Confidence 458899997443 344555556665 469999999998776544311 11110 1344555554442 36
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh------------------H-Hhhhcc----hhh---------
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------------------M-LRAETH----KFE--------- 618 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~------------------~-~~~~~~----~~~--------- 618 (729)
++.++|||+||++++.++. +|++++++|+.++...+. . +..... ...
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAK 232 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999998 999999999886532110 0 000000 000
Q ss_pred -----hhhhhhhcC------------------Ch---hhhh-----------hcCcccccCCCCCCEEEEEeCCCCCCCh
Q 004816 619 -----SRYIDNLVG------------------SE---KDYY-----------EKSPINFVDKFSCPIILFQGLEDKVVPP 661 (729)
Q Consensus 619 -----~~~~~~~~~------------------~~---~~~~-----------~~sp~~~~~~i~~PvL~i~G~~D~~vp~ 661 (729)
......... ++ +.+. ..+....++++++|+|+++|++|..+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~ 312 (354)
T PLN02578 233 QPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGP 312 (354)
T ss_pred CHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCH
Confidence 000000000 00 0000 0111223567899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 662 DQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 662 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+.+.++.+.+. +.+++++ ++||... .+...++.+.+.+|+.
T Consensus 313 ~~~~~l~~~~p----~a~l~~i-~~GH~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 313 AKAEKIKAFYP----DTTLVNL-QAGHCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred HHHHHHHHhCC----CCEEEEe-CCCCCcc-ccCHHHHHHHHHHHHh
Confidence 98888877764 3477777 5899754 4677788889999875
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=119.89 Aligned_cols=166 Identities=19% Similarity=0.254 Sum_probs=124.8
Q ss_pred hhhhHHHhhCCcEEEEecC-CC---CCCCch----hHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHH
Q 004816 511 NLSIQYWTSRGWAFVDVNY-GG---STGYGR----EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG 582 (729)
Q Consensus 511 ~~~~~~la~~G~~v~~~d~-rG---s~g~g~----~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG 582 (729)
+..+..++..||.|+.||+ || +.+.-. .|.+... ...-..|+...++||..++ +..+|+++|+++||
T Consensus 57 r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~---~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGa 131 (242)
T KOG3043|consen 57 REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHS---PPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGA 131 (242)
T ss_pred HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCC---cccchhHHHHHHHHHHHcC--CcceeeEEEEeecc
Confidence 4567788899999999995 44 222111 1222221 1223689999999999774 46899999999999
Q ss_pred HHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCCh
Q 004816 583 YTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPP 661 (729)
Q Consensus 583 ~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~ 661 (729)
-++..+.. .+ .|.++|+.+|..-- ...+.++++|+|++.++.|..+|+
T Consensus 132 k~vv~~~~~~~-~f~a~v~~hps~~d------------------------------~~D~~~vk~Pilfl~ae~D~~~p~ 180 (242)
T KOG3043|consen 132 KVVVTLSAKDP-EFDAGVSFHPSFVD------------------------------SADIANVKAPILFLFAELDEDVPP 180 (242)
T ss_pred eEEEEeeccch-hheeeeEecCCcCC------------------------------hhHHhcCCCCEEEEeecccccCCH
Confidence 98877776 55 89999999885310 122457789999999999999999
Q ss_pred HHHHHHHHHHHhCCC-CEEEEEECCCCcccCC-------cc---cHHHHHHHHHHHHHHHhC
Q 004816 662 DQARKIYKALKENGL-PVALVEYEGEQHGFRK-------AE---NIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 662 ~~~~~~~~~l~~~g~-~~~~~~~~~~gH~~~~-------~~---~~~~~~~~~~~fl~~~l~ 712 (729)
....++-++|+++.. ..++.+|++.+|+|.. ++ ..++.++.++.||.+++.
T Consensus 181 ~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 181 KDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred HHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999988643 3579999999999852 22 345788899999998863
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-11 Score=124.25 Aligned_cols=301 Identities=12% Similarity=0.130 Sum_probs=163.6
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEE
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 169 (729)
.-...|.+ |+++.|...+ .|+..||.++.. +++.+|||..+.. ...+..+++.++.++|... ..+|+.
T Consensus 38 F~~~~ft~dG~kllF~s~~---dg~~nly~lDL~-t~~i~QLTdg~g~------~~~g~~~s~~~~~~~Yv~~-~~~l~~ 106 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDF---DGNRNLYLLDLA-TGEITQLTDGPGD------NTFGGFLSPDDRALYYVKN-GRSLRR 106 (386)
T ss_dssp TTS--B-TTS-EEEEEE-T---TSS-EEEEEETT-T-EEEE---SS-B-------TTT-EE-TTSSEEEEEET-TTEEEE
T ss_pred ecCCCcCCCCCEEEEEecc---CCCcceEEEEcc-cCEEEECccCCCC------CccceEEecCCCeEEEEEC-CCeEEE
Confidence 45678898 8888886553 466789999988 4589999975410 1124455656667777753 247999
Q ss_pred EeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC---C----------CCcceEEEEEEcCCCceEEe
Q 004816 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD---A----------LNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 170 ~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~---~----------~~~~~~l~~~dl~~g~~~~l 236 (729)
+|+++ ++.+.|-..++. -..+.......|++.++.+.....+. + ....+.|+.||+.+|+.+.+
T Consensus 107 vdL~T--~e~~~vy~~p~~-~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v 183 (386)
T PF14583_consen 107 VDLDT--LEERVVYEVPDD-WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV 183 (386)
T ss_dssp EETTT----EEEEEE--TT-EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE
T ss_pred EECCc--CcEEEEEECCcc-cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE
Confidence 99998 777666554211 11223333466899988876443321 1 12357899999999999999
Q ss_pred eeCCCeeeeeeeCC-CCCeEEEEEecCCCCCCCC--cEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EE
Q 004816 237 VSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF 312 (729)
Q Consensus 237 t~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~--~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~ 312 (729)
.....+...+.+|| |...|.|+-- .||.. .+||+++.+ ++.. ..+....+. ..+..--|+|||. |+
T Consensus 184 ~~~~~wlgH~~fsP~dp~li~fCHE----Gpw~~Vd~RiW~i~~d-g~~~---~~v~~~~~~--e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 184 FEDTDWLGHVQFSPTDPTLIMFCHE----GPWDLVDQRIWTINTD-GSNV---KKVHRRMEG--ESVGHEFWVPDGSTIW 253 (386)
T ss_dssp EEESS-EEEEEEETTEEEEEEEEE-----S-TTTSS-SEEEEETT-S------EESS---TT--EEEEEEEE-TTSS-EE
T ss_pred EecCccccCcccCCCCCCEEEEecc----CCcceeceEEEEEEcC-CCcc---eeeecCCCC--cccccccccCCCCEEE
Confidence 88888889999999 7888888762 24554 479999977 3333 222222212 5666778999999 88
Q ss_pred EEEecCCC-ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEE--------------CCe
Q 004816 313 FVTDRKNG-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ--------------NGR 377 (729)
Q Consensus 313 ~~~~~~~g-~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~--------------~g~ 377 (729)
|......+ ...|+.+|+++++.+.+...+... +|..+. |++ +++--.. .+.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~------------H~~ss~-Dg~-L~vGDG~d~p~~v~~~~~~~~~~~ 319 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCS------------HFMSSP-DGK-LFVGDGGDAPVDVADAGGYKIEND 319 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE-SEE------------EEEE-T-TSS-EEEEEE------------------
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCCcee------------eeEEcC-CCC-EEEecCCCCCccccccccceecCC
Confidence 87764233 457999999999877765332110 111100 222 2221111 123
Q ss_pred EEEEEEECCCCceEeeccCCcc-----------eEEe-eeeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 378 SYLGILDDFGHSLSLLDIPFTD-----------IDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 378 ~~ly~~d~~~g~~~~lt~~~~~-----------v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
..||+++++.+..+.|...... .... .+++++.+++.++..++..||++++.
T Consensus 320 p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 320 PWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp -EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred cEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 4788899988887766543211 1111 45566677778888999999999865
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-12 Score=124.32 Aligned_cols=229 Identities=23% Similarity=0.271 Sum_probs=145.6
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCCCCchh
Q 004816 460 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 460 ~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~~ 538 (729)
..++.. +|....+++|.|... .++.|+||++||+.++........-...+++ .||.|+.|| |+.+.
T Consensus 37 ~~s~~~--~g~~r~y~l~vP~g~------~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPd-----g~~~~ 103 (312)
T COG3509 37 VASFDV--NGLKRSYRLYVPPGL------PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPD-----GYDRA 103 (312)
T ss_pred cccccc--CCCccceEEEcCCCC------CCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcC-----ccccc
Confidence 334544 688899999999873 3455999999997443222111111234444 599999995 33344
Q ss_pred HHHhhccCC--------CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH
Q 004816 539 FRERLLGRW--------GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM 609 (729)
Q Consensus 539 ~~~~~~~~~--------~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~ 609 (729)
|.......| +..++..+.+++..|+.+..+|++||.|.|.|.||.|+.+++. +|+.|.++..+++..-...
T Consensus 104 wn~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~ 183 (312)
T COG3509 104 WNANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGV 183 (312)
T ss_pred cCCCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCc
Confidence 433333332 3446788899999999999999999999999999999999998 9999999988887642100
Q ss_pred HhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC---------------
Q 004816 610 LRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN--------------- 674 (729)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~--------------- 674 (729)
-.. ..+-+..+. .--..+|......=..| |-+|..|..++..+..+.++.+...
T Consensus 184 a~~-----~~rp~~~m~----~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~~~~~~~~Waa~ng~~~~p~~~~~~~~~~~ 252 (312)
T COG3509 184 ACT-----PPRPVSVMA----FHGTADPLNPYHGGGVP--IGRGQRDGVVSAADLAARWAAVNGCQAGPDTAELPDVGDG 252 (312)
T ss_pred ccC-----CCCchhHHH----hcCCCCCCCCCCCCCcc--cccccccccccHHHHHHHHHHhcCCCCCCcccccCCCccc
Confidence 000 000001000 00011222111111233 7888888888777666666665322
Q ss_pred --------CCCEEEEEECCCCcccCCccc-----------HHHHHHHHHHHHHHHhC
Q 004816 675 --------GLPVALVEYEGEQHGFRKAEN-----------IKFTLEQQMVFFARVVG 712 (729)
Q Consensus 675 --------g~~~~~~~~~~~gH~~~~~~~-----------~~~~~~~~~~fl~~~l~ 712 (729)
+..++++.+.+.||.+..... -....+.|.+||..+-.
T Consensus 253 ~~~~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~R 309 (312)
T COG3509 253 TDYDTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHRR 309 (312)
T ss_pred ceeeccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhccc
Confidence 246889999999998764211 12467889999998765
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-12 Score=127.71 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=117.7
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
+..|.||++||.... ...|......|.++||.|+++|++|.+..... . . ....+++....+..+++... .
T Consensus 16 ~~~p~vvliHG~~~~--~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~---~-~---~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISGG--SWCWYKIRCLMENSGYKVTCIDLKSAGIDQSD---A-D---SVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCCC--cCcHHHHHHHHHhCCCEEEEecccCCCCCCCC---c-c---cCCCHHHHHHHHHHHHHhcC-C
Confidence 345889999997443 45677788888889999999999976532111 0 0 11224444433333333311 2
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC------hhHHhhhcchh------------------------h
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD------LSMLRAETHKF------------------------E 618 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d------~~~~~~~~~~~------------------------~ 618 (729)
.+++.++||||||.+++.++. +|++++++|..++... ...+....... .
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAIIK 165 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCceeeeC
Confidence 378999999999999999988 9999999999876421 10000000000 0
Q ss_pred hhhhhhh-cC-Chh---h-hhh------c----Ccc--cccCCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEE
Q 004816 619 SRYIDNL-VG-SEK---D-YYE------K----SPI--NFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 679 (729)
Q Consensus 619 ~~~~~~~-~~-~~~---~-~~~------~----sp~--~~~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 679 (729)
..+.... .. .++ . +.. . ++. ....++ ++|+|+|.|++|..+|++.++.+.+.+.. .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~----~~ 241 (273)
T PLN02211 166 KEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPP----SQ 241 (273)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCc----cE
Confidence 0000000 00 000 0 000 0 010 112344 68999999999999999999888877652 27
Q ss_pred EEEECCCCcccCCcccHHHHHHHHHHH
Q 004816 680 LVEYEGEQHGFRKAENIKFTLEQQMVF 706 (729)
Q Consensus 680 ~~~~~~~gH~~~~~~~~~~~~~~~~~f 706 (729)
++.++ +||.. .-+...+..+.+.+.
T Consensus 242 ~~~l~-~gH~p-~ls~P~~~~~~i~~~ 266 (273)
T PLN02211 242 VYELE-SDHSP-FFSTPFLLFGLLIKA 266 (273)
T ss_pred EEEEC-CCCCc-cccCHHHHHHHHHHH
Confidence 77886 79963 223444444444444
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=128.33 Aligned_cols=191 Identities=13% Similarity=0.042 Sum_probs=114.4
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+++. ..|......| .+|.|+++|+||.|.+...- . ...++....+..+++.. +.++
T Consensus 3 p~vvllHG~~~~~--~~w~~~~~~l--~~~~vi~~D~~G~G~S~~~~---~------~~~~~~~~~l~~~l~~~--~~~~ 67 (242)
T PRK11126 3 PWLVFLHGLLGSG--QDWQPVGEAL--PDYPRLYIDLPGHGGSAAIS---V------DGFADVSRLLSQTLQSY--NILP 67 (242)
T ss_pred CEEEEECCCCCCh--HHHHHHHHHc--CCCCEEEecCCCCCCCCCcc---c------cCHHHHHHHHHHHHHHc--CCCC
Confidence 6799999985544 4566666766 37999999999876543211 0 12334333333333332 3479
Q ss_pred EEEEEcChHHHHHHHHHh-CCC-cceEEEEeccccChhHH------------h-hhc-----chhhhhhhh-hh---cCC
Q 004816 573 LCITGGSAGGYTTLAALA-FRD-TFKAGASLYGVADLSML------------R-AET-----HKFESRYID-NL---VGS 628 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~-~~~a~v~~~~~~d~~~~------------~-~~~-----~~~~~~~~~-~~---~~~ 628 (729)
+.++||||||.+++.++. +++ +++++++.++....... + ... ......+.. .. ...
T Consensus 68 ~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (242)
T PRK11126 68 YWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLNA 147 (242)
T ss_pred eEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccCc
Confidence 999999999999999988 755 49999987754321100 0 000 000000000 00 000
Q ss_pred --hhhh----------------hh------cCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 629 --EKDY----------------YE------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 629 --~~~~----------------~~------~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
...+ .. .+....+.++++|+|+++|++|..+. .+.+.. ..++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~-----~~~~~~i~ 217 (242)
T PRK11126 148 EQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQL-----ALPLHVIP 217 (242)
T ss_pred cHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHHh-----cCeEEEeC
Confidence 0000 00 01112456789999999999998541 222221 46899999
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHH
Q 004816 685 GEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 685 ~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
++||.+. .++..++.+.+..|+.+
T Consensus 218 ~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 218 NAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred CCCCchh-hhChHHHHHHHHHHHhh
Confidence 9999654 46677888888888865
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=118.01 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=141.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
.++.+.++.. .+..+.+.+..- +..-+||++||.-...........+..++..||.++.+|++|.|.+.
T Consensus 9 ~~~~ivi~n~-~ne~lvg~lh~t----------gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~ 77 (269)
T KOG4667|consen 9 IAQKIVIPNS-RNEKLVGLLHET----------GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESE 77 (269)
T ss_pred eeeEEEeccC-CCchhhcceecc----------CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcC
Confidence 4566666666 666666644432 33458999999743333333455778889999999999999988765
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh--
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-- 613 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~-- 613 (729)
.++... .+..+++|+..+++++..... ---+|+|||-||-+++.++. +.+ ++-+|-.+|-+|......+
T Consensus 78 gsf~~G----n~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRl 149 (269)
T KOG4667|consen 78 GSFYYG----NYNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERL 149 (269)
T ss_pred CccccC----cccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhh
Confidence 554322 123457999999999976421 22369999999999999988 554 6777778887777654421
Q ss_pred cchhhhh-----hhhhhc--CC-hhhhhhcCcccc--------cC--CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC
Q 004816 614 THKFESR-----YIDNLV--GS-EKDYYEKSPINF--------VD--KFSCPIILFQGLEDKVVPPDQARKIYKALKENG 675 (729)
Q Consensus 614 ~~~~~~~-----~~~~~~--~~-~~~~~~~sp~~~--------~~--~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g 675 (729)
...+..+ +++... +. ...+...|..+. .. ..+||+|-+||..|.+||.+.+.+|++.+..
T Consensus 150 g~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n-- 227 (269)
T KOG4667|consen 150 GEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN-- 227 (269)
T ss_pred cccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC--
Confidence 1111111 111110 00 011111111111 11 2359999999999999999999999999875
Q ss_pred CCEEEEEECCCCcccCCcc
Q 004816 676 LPVALVEYEGEQHGFRKAE 694 (729)
Q Consensus 676 ~~~~~~~~~~~gH~~~~~~ 694 (729)
.+++++||++|.+...+
T Consensus 228 --H~L~iIEgADHnyt~~q 244 (269)
T KOG4667|consen 228 --HKLEIIEGADHNYTGHQ 244 (269)
T ss_pred --CceEEecCCCcCccchh
Confidence 58999999999987644
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-11 Score=129.86 Aligned_cols=313 Identities=13% Similarity=0.134 Sum_probs=184.7
Q ss_pred ceEEcCCCcEEEEeecCCCCCceEEEEcCCCC-CCCC-cccCCCCCccccccc---ccCCceEEEECCEEEEEECCCC--
Q 004816 93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPAKA-GDEP-SDITPKEYAVRTTAQ---EYGGGAFRIFGDTVIFSNYKDQ-- 165 (729)
Q Consensus 93 ~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~-~g~~-~~l~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~-- 165 (729)
.|... |++.||....++ .....++|..... .|.. +.|++.. ....-. ..+...++++++.++|..+..|
T Consensus 73 ~p~~~-g~~~y~~~~~~~-~~~~~~~r~~~~~~~~~~~evllD~n--~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e 148 (414)
T PF02897_consen 73 VPVRR-GGYYYYSRNQGG-KNYPVLYRRKTDEEDGPEEEVLLDPN--ELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSE 148 (414)
T ss_dssp --EEE-TTEEEEEEE-SS--SS-EEEEEETTS-TS-C-EEEEEGG--GGSTTSS-EEEEEEEETTTSSEEEEEEEETTSS
T ss_pred ccEEE-CCeEEEEEEcCC-CceEEEEEEecccCCCCceEEEEcch--HhhccCceEEeeeeeECCCCCEEEEEecCCCCc
Confidence 34434 889998876553 4444667765441 1233 4454321 111111 1112233345668888866554
Q ss_pred --cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC--CCCcceEEEEEEcCCCceE--EeeeC
Q 004816 166 --RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD--ALNSTTEIVAIALNGQNIQ--VLVSG 239 (729)
Q Consensus 166 --~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~--~~~~~~~l~~~dl~~g~~~--~lt~~ 239 (729)
.|+++|+++ |+ .+...- .......+.|++||+.++|+..+.... ......+||+..+.++... .|..+
T Consensus 149 ~~~l~v~Dl~t--g~--~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~ 222 (414)
T PF02897_consen 149 WYTLRVFDLET--GK--FLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE 222 (414)
T ss_dssp EEEEEEEETTT--TE--EEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-
T ss_pred eEEEEEEECCC--Cc--CcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee
Confidence 799999998 53 222210 012223389999999999998766433 1122478999999886543 55443
Q ss_pred C--Ce-eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCC---CeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 240 S--DF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG---DVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 240 ~--~~-~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g---~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
. .+ ..+...|+||++|+....... ..+++|++++. ++ ......+....+ .....+... ++.+++
T Consensus 223 ~~~~~~~~~~~~s~d~~~l~i~~~~~~----~~s~v~~~d~~-~~~~~~~~~~~l~~~~~----~~~~~v~~~-~~~~yi 292 (414)
T PF02897_consen 223 PDEPFWFVSVSRSKDGRYLFISSSSGT----SESEVYLLDLD-DGGSPDAKPKLLSPRED----GVEYYVDHH-GDRLYI 292 (414)
T ss_dssp TTCTTSEEEEEE-TTSSEEEEEEESSS----SEEEEEEEECC-CTTTSS-SEEEEEESSS----S-EEEEEEE-TTEEEE
T ss_pred cCCCcEEEEEEecCcccEEEEEEEccc----cCCeEEEEecc-ccCCCcCCcEEEeCCCC----ceEEEEEcc-CCEEEE
Confidence 2 33 457789999999876664331 23789999998 43 222344444433 111222222 334888
Q ss_pred EEecCCCceEEEEEEcCCCe---EE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC-CC
Q 004816 314 VTDRKNGFWNLHKWIESNNE---VL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GH 388 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~---~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~-~g 388 (729)
.++.......|+.++++... .. .|.+......- ..+.. .+++|++...+++..+|.++++. +.
T Consensus 293 ~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l-------~~~~~-----~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 293 LTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL-------EDVSL-----FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE-------EEEEE-----ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred eeCCCCCCcEEEEecccccccccceeEEcCCCCceeE-------EEEEE-----ECCEEEEEEEECCccEEEEEECCCCc
Confidence 88875567899999987754 33 44433211111 11222 46789999999999999999999 77
Q ss_pred ceEeeccCCc-ceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 389 SLSLLDIPFT-DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 389 ~~~~lt~~~~-~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
....+..+.. .+..+ ..+++.+++..++..+|..+|.+|+++++.+.++
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 7667765543 34444 4567889999999999999999999999987665
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-12 Score=133.89 Aligned_cols=185 Identities=11% Similarity=0.079 Sum_probs=110.4
Q ss_pred chhhhH---HHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEcChHHHHH
Q 004816 510 LNLSIQ---YWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTT 585 (729)
Q Consensus 510 ~~~~~~---~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~a 585 (729)
|...+. .|...+|.|+++|+||.++... ..+ ..+|....+..+++.. +.++ +.++||||||+++
T Consensus 85 w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~-------~~~---~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA 152 (343)
T PRK08775 85 WEGLVGSGRALDPARFRLLAFDFIGADGSLD-------VPI---DTADQADAIALLLDAL--GIARLHAFVGYSYGALVG 152 (343)
T ss_pred chhccCCCCccCccccEEEEEeCCCCCCCCC-------CCC---CHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHH
Confidence 444443 4545689999999997543211 111 1233333333333332 2335 5799999999999
Q ss_pred HHHHh-CCCcceEEEEeccccChhH----Hhh---h----c-------c--h---------hh--hhhhhhhcCC-----
Q 004816 586 LAALA-FRDTFKAGASLYGVADLSM----LRA---E----T-------H--K---------FE--SRYIDNLVGS----- 628 (729)
Q Consensus 586 ~~~~~-~~~~~~a~v~~~~~~d~~~----~~~---~----~-------~--~---------~~--~~~~~~~~~~----- 628 (729)
+.++. +|++++++|++++...... ... . . . . +. ..+.......
T Consensus 153 ~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
T PRK08775 153 LQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVIN 232 (343)
T ss_pred HHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccC
Confidence 99998 9999999999987532110 000 0 0 0 0 00 0000000000
Q ss_pred ------hh---------hhhhcCc-------------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEE
Q 004816 629 ------EK---------DYYEKSP-------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 680 (729)
Q Consensus 629 ------~~---------~~~~~sp-------------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 680 (729)
.. .....++ ...+.+|++|+|+++|++|.++|++.+.++.+.+.. ..++
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l 309 (343)
T PRK08775 233 GRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSL 309 (343)
T ss_pred CCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeE
Confidence 00 0000000 012567899999999999999999988888777642 4589
Q ss_pred EEECC-CCcccCCcccHHHHHHHHHHHHHHH
Q 004816 681 VEYEG-EQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 681 ~~~~~-~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+++++ +||... -+....+.+.+.+||.+.
T Consensus 310 ~~i~~~aGH~~~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 310 RVLRSPYGHDAF-LKETDRIDAILTTALRST 339 (343)
T ss_pred EEEeCCccHHHH-hcCHHHHHHHHHHHHHhc
Confidence 99985 899753 356778888888998764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-11 Score=122.77 Aligned_cols=249 Identities=13% Similarity=0.147 Sum_probs=166.9
Q ss_pred CHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEE
Q 004816 80 TADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIF 159 (729)
Q Consensus 80 t~e~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (729)
|.|.+......+++|... +.++||+.. .+|--.||..+.+|. ..+.-|. ++.|--....-++.+|+|
T Consensus 217 tFeK~vdl~~~vS~PmIV-~~RvYFlsD---~eG~GnlYSvdldGk-DlrrHTn--------FtdYY~R~~nsDGkrIvF 283 (668)
T COG4946 217 TFEKFVDLDGNVSSPMIV-GERVYFLSD---HEGVGNLYSVDLDGK-DLRRHTN--------FTDYYPRNANSDGKRIVF 283 (668)
T ss_pred ceeeeeecCCCcCCceEE-cceEEEEec---ccCccceEEeccCCc-hhhhcCC--------chhccccccCCCCcEEEE
Confidence 566666666778888888 999999976 345556888887721 2333332 334433444556779999
Q ss_pred EECCCCcEEEEeCCCCCCCCeecCCC-CC--CCc-eeeecc-----eecC-CCCEEEEEEeccC------CC--------
Q 004816 160 SNYKDQRLYKHSIDSKDSSPLPITPD-YG--EPL-VSYADG-----IFDP-RFNRYVTVREDRR------QD-------- 215 (729)
Q Consensus 160 ~~~~~~~l~~~d~~~~~~~~~~lt~~-~~--~~~-~~~~~~-----~~SP-dG~~l~~~~~~~~------~~-------- 215 (729)
.. .|+||++|+++ ...+.|.-+ +- .+. ..+.+| .|++ +|..+++++.... +.
T Consensus 284 q~--~GdIylydP~t--d~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~ 359 (668)
T COG4946 284 QN--AGDIYLYDPET--DSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKK 359 (668)
T ss_pred ec--CCcEEEeCCCc--CcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCC
Confidence 95 56699999987 666655432 10 000 011111 1344 7888888754221 00
Q ss_pred -----------C------CCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec
Q 004816 216 -----------A------LNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 278 (729)
Q Consensus 216 -----------~------~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~ 278 (729)
+ ......|-+++.++++.+++..+-+.......|||||+++... +..+||++|++
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN--------dr~el~vidid 431 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN--------DRFELWVIDID 431 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc--------CceEEEEEEec
Confidence 0 0112357788999999899988888888899999999987654 45679999999
Q ss_pred CCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCC--ceEEEEEEcCCCeEEEeeccCccccCCcccccCcc
Q 004816 279 ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG--FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINS 355 (729)
Q Consensus 279 ~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g--~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~ 355 (729)
+|+.+. +-.... .-+..+.|+|+++ ++|.-.. | .++|.++|.++++.-.+|++.+...+|.+.+
T Consensus 432 -ngnv~~--idkS~~----~lItdf~~~~nsr~iAYafP~--gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~---- 498 (668)
T COG4946 432 -NGNVRL--IDKSEY----GLITDFDWHPNSRWIAYAFPE--GYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP---- 498 (668)
T ss_pred -CCCeeE--eccccc----ceeEEEEEcCCceeEEEecCc--ceeeeeEEEEecCCCeEEEecCCcccccCcccCC----
Confidence 887532 222222 4557889999999 7776654 4 4678899999999999997776666777766
Q ss_pred eeeeeecCCCCEEEEEEEE
Q 004816 356 YEIIQSHGEKNLIACSYRQ 374 (729)
Q Consensus 356 ~~~l~~~~~~~~l~~~s~~ 374 (729)
+++.|||.+.+
T Consensus 499 --------d~ryLYfLs~R 509 (668)
T COG4946 499 --------DGRYLYFLSAR 509 (668)
T ss_pred --------CCcEEEEEecc
Confidence 77888887764
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=127.57 Aligned_cols=159 Identities=20% Similarity=0.262 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH----Hhhh---cchhhhhhhh-
Q 004816 553 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM----LRAE---THKFESRYID- 623 (729)
Q Consensus 553 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~----~~~~---~~~~~~~~~~- 623 (729)
+=+..+++||.+++.+++++|+|+|.|.||-+|+.++. +| .++++|+.+|..-... +... ..........
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~ 82 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKF 82 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhc
Confidence 44789999999999999999999999999999999999 66 8999999988532211 0000 0000000000
Q ss_pred --hhcCCh---hhh------hhcCcccccCCCCCCEEEEEeCCCCCCChH-HHHHHHHHHHhCCCC--EEEEEECCCCcc
Q 004816 624 --NLVGSE---KDY------YEKSPINFVDKFSCPIILFQGLEDKVVPPD-QARKIYKALKENGLP--VALVEYEGEQHG 689 (729)
Q Consensus 624 --~~~~~~---~~~------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~-~~~~~~~~l~~~g~~--~~~~~~~~~gH~ 689 (729)
...+.. ..+ ......-.+.++++|+|+++|++|...|-. .++.+.+.|+++|.+ ++++.||++||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~ 162 (213)
T PF08840_consen 83 SWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHL 162 (213)
T ss_dssp EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S-
T ss_pred eecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCce
Confidence 000000 000 001112236788999999999999998874 556778889998865 789999999997
Q ss_pred cCCc---------------------------ccHHHHHHHHHHHHHHHhC
Q 004816 690 FRKA---------------------------ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 690 ~~~~---------------------------~~~~~~~~~~~~fl~~~l~ 712 (729)
+..+ ....+.+.++++||+++|+
T Consensus 163 i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 163 IEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp --STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5311 1356889999999999986
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-11 Score=129.25 Aligned_cols=216 Identities=11% Similarity=0.030 Sum_probs=130.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++....+ ...|.||++||.+.. ...|...+..|++ +|.|+++|++|.|........ ..
T Consensus 113 ~~~~~~y~~~G~----------~~~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~----~~ 175 (383)
T PLN03084 113 DLFRWFCVESGS----------NNNPPVLLIHGFPSQ--AYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPG----YG 175 (383)
T ss_pred CceEEEEEecCC----------CCCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCccc----cc
Confidence 677776433221 124789999998543 3456667777764 899999999976543322100 00
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh-----hHHhhhc-------
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL-----SMLRAET------- 614 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~-----~~~~~~~------- 614 (729)
.....+++...+..++++. ..+++.|+|||+||.+++.++. +|++++++|+.++.... .......
T Consensus 176 ~~ys~~~~a~~l~~~i~~l--~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~ 253 (383)
T PLN03084 176 FNYTLDEYVSSLESLIDEL--KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGE 253 (383)
T ss_pred ccCCHHHHHHHHHHHHHHh--CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhh
Confidence 1123455554444444442 3368999999999999999988 99999999999976421 0000000
Q ss_pred ----chhh--h-----------------hhhhhhc--CC-hhh----hhhc-Cc-------cc---ccCCCCCCEEEEEe
Q 004816 615 ----HKFE--S-----------------RYIDNLV--GS-EKD----YYEK-SP-------IN---FVDKFSCPIILFQG 653 (729)
Q Consensus 615 ----~~~~--~-----------------~~~~~~~--~~-~~~----~~~~-sp-------~~---~~~~i~~PvL~i~G 653 (729)
.... . .|..... +. ... +... .. +. ...++++|+|+++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G 333 (383)
T PLN03084 254 IFSQDPLRASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWG 333 (383)
T ss_pred hhhcchHHHHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEee
Confidence 0000 0 0000000 00 000 0000 00 00 01357899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 654 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 654 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++|..++++.++++.+.. +.+++++|++||.... +..++..+.+.+|+.
T Consensus 334 ~~D~~v~~~~~~~~a~~~-----~a~l~vIp~aGH~~~~-E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 334 LRDRWLNYDGVEDFCKSS-----QHKLIELPMAGHHVQE-DCGEELGGIISGILS 382 (383)
T ss_pred CCCCCcCHHHHHHHHHhc-----CCeEEEECCCCCCcch-hCHHHHHHHHHHHhh
Confidence 999999998777766642 4589999999996544 677788888888875
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-10 Score=118.00 Aligned_cols=275 Identities=12% Similarity=0.141 Sum_probs=149.8
Q ss_pred CCCcccCCCCC-cccccccccCCceEEEECCEEEEEECCCC--cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCC
Q 004816 126 DEPSDITPKEY-AVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF 202 (729)
Q Consensus 126 g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG 202 (729)
.+..+||+.+. +.+.. +-..+|..++++++|.++.++ +||++|+++ ++.+|||.++ +.......+||++
T Consensus 21 ~~VtrLT~~~~~~h~~Y---F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~---g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLY---FYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGP---GDNTFGGFLSPDD 92 (386)
T ss_dssp -EEEE-S-TTS-EE------TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS----B-TTT-EE-TTS
T ss_pred ceEEEecCCCCccccee---ecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCC---CCCccceEEecCC
Confidence 35567777653 22222 234557777889999888765 999999999 9999999874 2222357899999
Q ss_pred CEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC-eeeeeee--CCCCCeEEEEEecCCCC----CC--------
Q 004816 203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD-FYAFPRM--DPRGERMAWIEWHHPNM----PW-------- 267 (729)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~-~~~~~~~--SPDG~~la~~~~~~~~~----~~-------- 267 (729)
+.++|+... .+|+.+|+++++.+.|..-+. +...-.| +.|+++++.+...+... .|
T Consensus 93 ~~~~Yv~~~---------~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 93 RALYYVKNG---------RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp SEEEEEETT---------TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred CeEEEEECC---------CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 999998753 369999999999988876443 3333445 56899998877543321 11
Q ss_pred --CCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC-c-EEEEEecC-CC-ceEEEEEEcCCCeEEEeeccC
Q 004816 268 --DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG-E-LFFVTDRK-NG-FWNLHKWIESNNEVLAIYSLD 341 (729)
Q Consensus 268 --~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG-~-l~~~~~~~-~g-~~~l~~~d~~~g~~~~l~~~~ 341 (729)
....|+.+|+. +|+. ..++... ..+..+.+||.. . |.|..... .. ..+||.++.+++..+.+....
T Consensus 164 a~p~~~i~~idl~-tG~~--~~v~~~~-----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~ 235 (386)
T PF14583_consen 164 ARPHCRIFTIDLK-TGER--KVVFEDT-----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM 235 (386)
T ss_dssp C---EEEEEEETT-T--E--EEEEEES-----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---
T ss_pred hCCCceEEEEECC-CCce--eEEEecC-----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC
Confidence 23579999999 7875 3444443 455678888854 4 55654431 11 258999999988888876322
Q ss_pred --ccccCCcccccCcceeeeeecCCCCEEEEEEEEC-C-eEEEEEEECCCCceEeeccCCcceEEeeeeCCEEEEEEeCC
Q 004816 342 --AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-G-RSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASG 417 (729)
Q Consensus 342 --~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~-g-~~~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~ 417 (729)
...+..-|.+ ||..|++.+... + ...|+.+++++++.+.+....+.+.-.+..++.+++--++.
T Consensus 236 ~~e~~gHEfw~~------------DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 236 EGESVGHEFWVP------------DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTEEEEEEEE-T------------TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE--
T ss_pred CCcccccccccC------------CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCC
Confidence 2333345665 788887766543 3 35799999999988776544333322244444444433221
Q ss_pred -------------CCCceEEEEEcCCCcceeee
Q 004816 418 -------------VEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 418 -------------~~~~~ly~~d~~~~~~~~lt 437 (729)
...+-||++++..++...|.
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp -----------------EEEEEETTTTEEEEEE
T ss_pred CCccccccccceecCCcEEEEeccccCceeeee
Confidence 11225788888887766554
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-11 Score=126.86 Aligned_cols=207 Identities=20% Similarity=0.249 Sum_probs=130.9
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
...|.||++||... ....|+..+..+... |+.|+++|..| .|+. +..+.. ...++.+....+..+..+..
T Consensus 56 ~~~~pvlllHGF~~--~~~~w~~~~~~L~~~~~~~v~aiDl~G-~g~~-s~~~~~----~~y~~~~~v~~i~~~~~~~~- 126 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGA--SSFSWRRVVPLLSKAKGLRVLAIDLPG-HGYS-SPLPRG----PLYTLRELVELIRRFVKEVF- 126 (326)
T ss_pred CCCCcEEEeccccC--CcccHhhhccccccccceEEEEEecCC-CCcC-CCCCCC----CceehhHHHHHHHHHHHhhc-
Confidence 34677999999743 456666655555554 79999999987 3321 111111 11456667766665555533
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEE---EeccccChhH-----Hhhhcch-------------------hhhh
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGA---SLYGVADLSM-----LRAETHK-------------------FESR 620 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v---~~~~~~d~~~-----~~~~~~~-------------------~~~~ 620 (729)
.+++.++|||+||++|+.+|+ +|+.++.++ ...+...... ....... +...
T Consensus 127 -~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 127 -VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred -CcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 245999999999999999998 999999999 4444322110 0000000 0000
Q ss_pred hhhhhcC---C---------------------hhh----h---h--hcCcccccCCCC-CCEEEEEeCCCCCCChHHHHH
Q 004816 621 YIDNLVG---S---------------------EKD----Y---Y--EKSPINFVDKFS-CPIILFQGLEDKVVPPDQARK 666 (729)
Q Consensus 621 ~~~~~~~---~---------------------~~~----~---~--~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~ 666 (729)
....... + .+. + . ...+...+.++. +|+|+++|++|..+|.+.++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~ 285 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEE 285 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHH
Confidence 0000000 0 000 0 0 012233456676 999999999999999997777
Q ss_pred HHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 667 IYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 667 ~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+.+.+ ..+++++++++||.... +..+.....+..|+.++.
T Consensus 286 ~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 286 LKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARLR 325 (326)
T ss_pred HHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHhc
Confidence 77666 36799999999997544 778888899999998753
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-12 Score=115.11 Aligned_cols=203 Identities=17% Similarity=0.151 Sum_probs=143.7
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hhhhHHHhhCCcEEEEecCCC
Q 004816 453 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGG 531 (729)
Q Consensus 453 ~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la~~G~~v~~~d~rG 531 (729)
+...+.+.+.+-- .| .-...+|.|.+ ..|++|++|||.|....... -..+.-...+||+|+.++|.-
T Consensus 40 ~~i~r~e~l~Yg~--~g-~q~VDIwg~~~---------~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l 107 (270)
T KOG4627|consen 40 KQIIRVEHLRYGE--GG-RQLVDIWGSTN---------QAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNL 107 (270)
T ss_pred ccccchhccccCC--CC-ceEEEEecCCC---------CccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCc
Confidence 3445556655543 33 44446777744 34899999999987555432 235566778999999999954
Q ss_pred CCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChhH
Q 004816 532 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSM 609 (729)
Q Consensus 532 s~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~~ 609 (729)
++. ++ .-...+.|+...++|+++... +.+++.+.|||.|+++++++.. +.+++.++++.+|++++..
T Consensus 108 ~~q-~h---------tL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~E 176 (270)
T KOG4627|consen 108 CPQ-VH---------TLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRE 176 (270)
T ss_pred Ccc-cc---------cHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHH
Confidence 331 11 112347889999999988743 4567999999999999999987 8889999999999999987
Q ss_pred HhhhcchhhhhhhhhhcC-ChhhhhhcCcc-cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCC
Q 004816 610 LRAETHKFESRYIDNLVG-SEKDYYEKSPI-NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687 (729)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~-~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~g 687 (729)
+...... .-++ ..+.-...|+. .....++.|+|++.++.|.---++|.+.+...+++ ..+..|++-+
T Consensus 177 L~~te~g-------~dlgLt~~~ae~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~ 245 (270)
T KOG4627|consen 177 LSNTESG-------NDLGLTERNAESVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYD 245 (270)
T ss_pred HhCCccc-------cccCcccchhhhcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcc
Confidence 6443211 1111 12223333442 23566789999999999987778999999999986 4788999999
Q ss_pred cc
Q 004816 688 HG 689 (729)
Q Consensus 688 H~ 689 (729)
|.
T Consensus 246 hy 247 (270)
T KOG4627|consen 246 HY 247 (270)
T ss_pred hh
Confidence 95
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.8e-12 Score=123.39 Aligned_cols=207 Identities=12% Similarity=0.132 Sum_probs=120.8
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
...+.+|++||.+.+ ...|......|+. ...|.++|..|.|.+.+. ...-+.... ...+.+.++.-...-.
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG~G~SSRP---~F~~d~~~~-e~~fvesiE~WR~~~~-- 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLGFGRSSRP---KFSIDPTTA-EKEFVESIEQWRKKMG-- 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccCCCCCCCC---CCCCCcccc-hHHHHHHHHHHHHHcC--
Confidence 334558889997433 2334444555666 899999999865554433 322222211 2344555553333322
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH------hhhc--------------c---------hh--
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML------RAET--------------H---------KF-- 617 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~------~~~~--------------~---------~~-- 617 (729)
-+++.|+|||+|||++..+|. +|++++.+++.+|..-.... .... . .+
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 369999999999999999988 99999999999885321100 0000 0 00
Q ss_pred ------------------hhhhhhhhc----C-Ch---hhh--------hhcCc-ccccCCCC--CCEEEEEeCCCCCCC
Q 004816 618 ------------------ESRYIDNLV----G-SE---KDY--------YEKSP-INFVDKFS--CPIILFQGLEDKVVP 660 (729)
Q Consensus 618 ------------------~~~~~~~~~----~-~~---~~~--------~~~sp-~~~~~~i~--~PvL~i~G~~D~~vp 660 (729)
.+.++...+ . ++ ..+ .++.| +..+..++ +|+++|+|++|.+ +
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWm-D 317 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWM-D 317 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCcccc-c
Confidence 000000000 0 00 000 01112 22244445 9999999999975 5
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 661 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 661 ~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
...+.++...+. ...++.+++|++||... -++.+.+.+.++.++++
T Consensus 318 ~~~g~~~~~~~~--~~~~~~~~v~~aGHhvy-lDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 318 KNAGLEVTKSLM--KEYVEIIIVPGAGHHVY-LDNPEFFNQIVLEECDK 363 (365)
T ss_pred chhHHHHHHHhh--cccceEEEecCCCceee-cCCHHHHHHHHHHHHhc
Confidence 556666666653 34689999999999753 24556777777777654
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-11 Score=125.40 Aligned_cols=230 Identities=13% Similarity=0.082 Sum_probs=140.2
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc----------c-chhh---hHHHhhCCcEEEEecCCCCCC-
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG----------I-LNLS---IQYWTSRGWAFVDVNYGGSTG- 534 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~----------~-~~~~---~~~la~~G~~v~~~d~rGs~g- 534 (729)
.+|.+..|-..+ ..+-++||++|+..+..... . |..+ -..+--.-|-|+++|.-|++.
T Consensus 41 ~~~~Y~t~G~ln-------~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~ 113 (389)
T PRK06765 41 VQMGYETYGTLN-------RAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQV 113 (389)
T ss_pred ceEEEEeccccC-------CCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcC
Confidence 455555555444 23458999999964422110 1 2211 122334459999999998642
Q ss_pred -------CchhHHHhh-----ccCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEE
Q 004816 535 -------YGREFRERL-----LGRWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGAS 600 (729)
Q Consensus 535 -------~g~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~~~~~~a~v~ 600 (729)
.|..-.... ..+.....+.|+.+.+..+++... .+++. ++||||||++++.++. +|++++.+|+
T Consensus 114 ~~p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lg--i~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ 191 (389)
T PRK06765 114 KDPNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLG--IARLHAVMGPSMGGMQAQEWAVHYPHMVERMIG 191 (389)
T ss_pred CCCCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcC--CCCceEEEEECHHHHHHHHHHHHChHhhheEEE
Confidence 121111111 112344568888888887777643 46775 9999999999999988 9999999999
Q ss_pred eccccCh--h---HHhh---h---cc-------------h------h---------hhhhhhhhcCC-------------
Q 004816 601 LYGVADL--S---MLRA---E---TH-------------K------F---------ESRYIDNLVGS------------- 628 (729)
Q Consensus 601 ~~~~~d~--~---~~~~---~---~~-------------~------~---------~~~~~~~~~~~------------- 628 (729)
+++.... . .+.. . .. . . ...++...++.
T Consensus 192 ia~~~~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~ 271 (389)
T PRK06765 192 VIGNPQNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVS 271 (389)
T ss_pred EecCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCcccccccccccc
Confidence 8653211 0 0000 0 00 0 0 00000000000
Q ss_pred ----hhhhh------------------------hc-------CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHh
Q 004816 629 ----EKDYY------------------------EK-------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE 673 (729)
Q Consensus 629 ----~~~~~------------------------~~-------sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~ 673 (729)
.+.|. .. +....+.++++|+|+++|++|.++|+++++++.+.+..
T Consensus 272 ~~~~~e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~ 351 (389)
T PRK06765 272 TLTSFEKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQK 351 (389)
T ss_pred chhhHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 00110 00 12234567899999999999999999999999999987
Q ss_pred CCCCEEEEEECC-CCcccCCcccHHHHHHHHHHHHHH
Q 004816 674 NGLPVALVEYEG-EQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 674 ~g~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.+.+++++++++ .||.. ..+...++.+.+.+||.+
T Consensus 352 ~~~~a~l~~I~s~~GH~~-~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 352 QGKYAEVYEIESINGHMA-GVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred cCCCeEEEEECCCCCcch-hhcCHHHHHHHHHHHHcc
Confidence 666789999985 89964 335566777888888865
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-11 Score=116.27 Aligned_cols=175 Identities=19% Similarity=0.149 Sum_probs=119.4
Q ss_pred EEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHH
Q 004816 475 YYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVND 554 (729)
Q Consensus 475 ~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D 554 (729)
.++.|.. .+.+|+||++||.. .....|..+.+.+++.||+|+.+|+....+. -...+.++
T Consensus 7 ~v~~P~~-------~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~-----------~~~~~~~~ 66 (259)
T PF12740_consen 7 LVYYPSS-------AGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGGP-----------DDTDEVAS 66 (259)
T ss_pred EEEecCC-------CCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCCC-----------CcchhHHH
Confidence 5567765 56799999999974 3334488899999999999999996532221 12234788
Q ss_pred HHHHHHHHHhCC--------CCCCCcEEEEEcChHHHHHHHHHh-C-----CCcceEEEEeccccChhHHhhhcchhhhh
Q 004816 555 CCSCATFLVGSG--------KADEKRLCITGGSAGGYTTLAALA-F-----RDTFKAGASLYGVADLSMLRAETHKFESR 620 (729)
Q Consensus 555 ~~~~~~~l~~~~--------~~d~~ri~i~G~S~GG~~a~~~~~-~-----~~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 620 (729)
+...++|+.+.. .+|-.|++|+|||.||.+|..++. + +.+|++++++.|+-.+......
T Consensus 67 ~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~------- 139 (259)
T PF12740_consen 67 AAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQT------- 139 (259)
T ss_pred HHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCC-------
Confidence 888999987731 258889999999999999988876 4 5689999999998633221110
Q ss_pred hhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCC--------CCCh--HHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 621 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK--------VVPP--DQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 621 ~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~--------~vp~--~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
.+..+.. .| ..-+...|+|++-..-.. -|-+ .+-.+|+++++. +...++.++.||.
T Consensus 140 -------~P~v~~~-~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~---p~~~~v~~~~GH~ 205 (259)
T PF12740_consen 140 -------EPPVLTY-TP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKP---PSWHFVAKDYGHM 205 (259)
T ss_pred -------CCccccC-cc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCC---CEEEEEeCCCCch
Confidence 0111110 11 111245899999666553 2323 245678777754 7788888999996
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-11 Score=122.02 Aligned_cols=196 Identities=22% Similarity=0.276 Sum_probs=126.3
Q ss_pred hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 512 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 512 ~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
..++.|.++||+|+++||-|-+. .|... .-....+-|.+++++.+... +.-...+++++|+|.||+.+++++.
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Glg~---~y~~~---~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGLGT---PYLNG---RSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCCCC---cccCc---HhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence 46778889999999999987554 33211 11112355666666655543 3223579999999999999988874
Q ss_pred -----CCCc---ceEEEEeccccChhHHhhhcch-------------hhhhh------hhhhcC----------------
Q 004816 591 -----FRDT---FKAGASLYGVADLSMLRAETHK-------------FESRY------IDNLVG---------------- 627 (729)
Q Consensus 591 -----~~~~---~~a~v~~~~~~d~~~~~~~~~~-------------~~~~~------~~~~~~---------------- 627 (729)
-|+. +.++++..+..|+..+...... +...| +...+.
T Consensus 91 l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~ 170 (290)
T PF03583_consen 91 LAPSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLA 170 (290)
T ss_pred HhHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 2443 7888888888776654321100 00000 000000
Q ss_pred ---------C------------------h---hhhhhcCc-ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC-
Q 004816 628 ---------S------------------E---KDYYEKSP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG- 675 (729)
Q Consensus 628 ---------~------------------~---~~~~~~sp-~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g- 675 (729)
. + ..+.+.+. ...-...+.|++|.||..|.+||+....++++.+.++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~ 250 (290)
T PF03583_consen 171 DIVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGG 250 (290)
T ss_pred HHHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCC
Confidence 0 0 00011110 00011235899999999999999999999999999999
Q ss_pred CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCCCCCC
Q 004816 676 LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVA 717 (729)
Q Consensus 676 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 717 (729)
.+++++.+++.+|... ........++|+...|.+.+..
T Consensus 251 a~V~~~~~~~~~H~~~----~~~~~~~a~~Wl~~rf~G~~~~ 288 (290)
T PF03583_consen 251 ADVEYVRYPGGGHLGA----AFASAPDALAWLDDRFAGKPAT 288 (290)
T ss_pred CCEEEEecCCCChhhh----hhcCcHHHHHHHHHHHCCCCCC
Confidence 7999999999999632 2234467789999999877654
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-11 Score=127.23 Aligned_cols=236 Identities=20% Similarity=0.230 Sum_probs=154.7
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc---hhhh---HHHhhCCcEEEEecCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---NLSI---QYWTSRGWAFVDVNYGG 531 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~---~~~~---~~la~~G~~v~~~d~rG 531 (729)
...+.++-+ ||.+|...+|.|++ .++.|+++..+-.|-......+ .... ..|+.+||+|+..|.||
T Consensus 19 ~~~v~V~MR-DGvrL~~dIy~Pa~-------~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG 90 (563)
T COG2936 19 ERDVMVPMR-DGVRLAADIYRPAG-------AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRG 90 (563)
T ss_pred eeeeeEEec-CCeEEEEEEEccCC-------CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccc
Confidence 355777888 99999999999987 5788999998833323221111 1122 37899999999999999
Q ss_pred CCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH
Q 004816 532 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 610 (729)
Q Consensus 532 s~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~ 610 (729)
++++...+.... . .+.+|-.+.|+||.++++.+ .+|+++|.||+|+..+++|+ +|+.+|+++...+..|...-
T Consensus 91 ~~~SeG~~~~~~----~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d 164 (563)
T COG2936 91 RGGSEGVFDPES----S-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRD 164 (563)
T ss_pred cccCCcccceec----c-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccccccc
Confidence 888665543322 1 36899999999999999886 79999999999999999998 88899999988887663211
Q ss_pred ---------------hh-hcc--------hh------hhhhhh-hhc---------CCh-------------hhhhhcCc
Q 004816 611 ---------------RA-ETH--------KF------ESRYID-NLV---------GSE-------------KDYYEKSP 637 (729)
Q Consensus 611 ---------------~~-~~~--------~~------~~~~~~-~~~---------~~~-------------~~~~~~sp 637 (729)
+. ... .. ...+.. ..+ +.+ ..+...+-
T Consensus 165 ~~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~~~~~ 244 (563)
T COG2936 165 DAFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWRRGDR 244 (563)
T ss_pred ccccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhhccCc
Confidence 00 000 00 000000 000 000 11222344
Q ss_pred ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc-----ccHHHHHHHHHHHHHHHhC
Q 004816 638 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA-----ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 638 ~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~-----~~~~~~~~~~~~fl~~~l~ 712 (729)
.....++++|+|++.|-.|.. ...+.++++.++.. +..+++-|- .|.-..- ......++...+||+-++.
T Consensus 245 ~~d~~~i~vP~L~i~gW~D~~--l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~~l~~~~~ 319 (563)
T COG2936 245 VADLSKIKVPALVIGGWSDGY--LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDDFLDAYLD 319 (563)
T ss_pred ccccccCCCcEEEEccccccc--ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHhhhhHhhh
Confidence 455778999999999999964 45677788887764 345666553 4542211 2234555555666666654
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=124.12 Aligned_cols=218 Identities=18% Similarity=0.164 Sum_probs=132.9
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCC----cEEEEecCCCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDVNYGGST 533 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G----~~v~~~d~rGs~ 533 (729)
.+.+.+.+..-|....+++|.|.+.. .+++|+|+++||..+...... ...+..+.+.| ..++.+|.....
T Consensus 180 ~~~~~~~S~~Lg~~r~v~VY~P~~y~-----~~~~PvlyllDG~~w~~~~~~-~~~ld~li~~g~i~P~ivV~id~~~~~ 253 (411)
T PRK10439 180 AKEIIWKSERLGNSRRVWIYTTGDAA-----PEERPLAILLDGQFWAESMPV-WPALDSLTHRGQLPPAVYLLIDAIDTT 253 (411)
T ss_pred eEEEEEEccccCCceEEEEEECCCCC-----CCCCCEEEEEECHHhhhcCCH-HHHHHHHHHcCCCCceEEEEECCCCcc
Confidence 45667777546778888999998732 357899999999765443322 23445566666 446777753211
Q ss_pred CCchhHHHhhccCCCcccHHH-H-HHHHHHHHhCC--CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh
Q 004816 534 GYGREFRERLLGRWGIVDVND-C-CSCATFLVGSG--KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D-~-~~~~~~l~~~~--~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~ 608 (729)
....++. . ...+.+ + ..++.++.++. ..|+++.+|.|+||||+.|+.++. +|++|.++++.+|.+-+.
T Consensus 254 ~R~~el~-----~--~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~ 326 (411)
T PRK10439 254 HRSQELP-----C--NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWP 326 (411)
T ss_pred cccccCC-----c--hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecC
Confidence 1111110 0 001111 1 23445555543 347889999999999999999987 999999999999864221
Q ss_pred HHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 609 MLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
... .. .... + .+.+... ....-...+++-+|..|... .+.++++++.|+++|.++++.+++| ||
T Consensus 327 ~~~---~~-~~~~---l---~~~l~~~----~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-GH 390 (411)
T PRK10439 327 HRG---GQ-QEGV---L---LEQLKAG----EVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-GH 390 (411)
T ss_pred Ccc---CC-chhH---H---HHHHHhc----ccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-Cc
Confidence 100 00 0000 0 0111110 01111235788899988543 5778999999999999999999997 68
Q ss_pred ccCCcccHHHHHHHHHHHH
Q 004816 689 GFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 689 ~~~~~~~~~~~~~~~~~fl 707 (729)
.+ ..+...+..-+.|+
T Consensus 391 d~---~~Wr~~L~~~L~~l 406 (411)
T PRK10439 391 DA---LCWRGGLIQGLIDL 406 (411)
T ss_pred CH---HHHHHHHHHHHHHH
Confidence 64 23444444444444
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=144.99 Aligned_cols=215 Identities=15% Similarity=0.168 Sum_probs=130.5
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
..|.||++||.+.+. ..|...+..|.. +|.|+++|+||.|.+.................+++...+..++++ .+.
T Consensus 1370 ~~~~vVllHG~~~s~--~~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~--l~~ 1444 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTG--EDWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH--ITP 1444 (1655)
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH--hCC
Confidence 357899999985544 346666676654 699999999976654321100000000112345555544444443 235
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh--H---Hhhh-------------cchhhhhhh-hh----h-
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--M---LRAE-------------THKFESRYI-DN----L- 625 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~--~---~~~~-------------~~~~~~~~~-~~----~- 625 (729)
+++.++||||||.+++.++. +|++++++|+.++...+. . .... ...+...+. .. .
T Consensus 1445 ~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 1524 (1655)
T PLN02980 1445 GKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWKSLR 1524 (1655)
T ss_pred CCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhhhhc
Confidence 78999999999999999988 999999999887642211 0 0000 000000000 00 0
Q ss_pred -------------c-CChh----hhhhc------CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC------
Q 004816 626 -------------V-GSEK----DYYEK------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG------ 675 (729)
Q Consensus 626 -------------~-~~~~----~~~~~------sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g------ 675 (729)
. .+.. .+... +....+.++++|+|+++|++|..++ +.+.++.+.+.+..
T Consensus 1525 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~ 1603 (1655)
T PLN02980 1525 NHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDK 1603 (1655)
T ss_pred cCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccc
Confidence 0 0000 00000 1113367889999999999998774 66777777765421
Q ss_pred --CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 676 --LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 676 --~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
..++++++|++||... .++...+.+.+.+||.+.-.
T Consensus 1604 ~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL~~~~~ 1641 (1655)
T PLN02980 1604 GKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFLTRLHN 1641 (1655)
T ss_pred cccceEEEEECCCCCchH-HHCHHHHHHHHHHHHHhccc
Confidence 1268999999999754 46677888999999988654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-10 Score=110.93 Aligned_cols=216 Identities=15% Similarity=0.166 Sum_probs=132.0
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEE
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 169 (729)
.++|.|.+ .+.+||++... + .|++++..+ ....+...+ +..+..+...++.+++... +.+.+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~---~--~i~~~~~~~--~~~~~~~~~--------~~~G~~~~~~~g~l~v~~~--~~~~~ 64 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPG---G--RIYRVDPDT--GEVEVIDLP--------GPNGMAFDRPDGRLYVADS--GGIAV 64 (246)
T ss_dssp EEEEEEETTTTEEEEEETTT---T--EEEEEETTT--TEEEEEESS--------SEEEEEEECTTSEEEEEET--TCEEE
T ss_pred CcceEEECCCCEEEEEEcCC---C--EEEEEECCC--CeEEEEecC--------CCceEEEEccCCEEEEEEc--CceEE
Confidence 36899999 99999998733 3 588887772 233222222 0112222223456666653 34666
Q ss_pred EeCCCCCCCCeecCCCC-CC-CceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeee
Q 004816 170 HSIDSKDSSPLPITPDY-GE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPR 247 (729)
Q Consensus 170 ~d~~~~~~~~~~lt~~~-~~-~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~ 247 (729)
+|+.+ ++.+.+.... +. ...+.++.+++|||+ |++...............||+++.+ ++.+.+..+....++.+
T Consensus 65 ~d~~~--g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~ 140 (246)
T PF08450_consen 65 VDPDT--GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIA 140 (246)
T ss_dssp EETTT--TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEE
T ss_pred EecCC--CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceE
Confidence 69887 7666665431 11 357889999999999 4555433222111111689999998 77887777777778999
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCC-CeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEE
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~ 326 (729)
|||||+.|++... ....||.++++..+ .+...+.+...... ......++...+|+|+... . +...|++
T Consensus 141 ~s~dg~~lyv~ds-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~-~--~~~~I~~ 209 (246)
T PF08450_consen 141 FSPDGKTLYVADS-------FNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVAD-W--GGGRIVV 209 (246)
T ss_dssp EETTSSEEEEEET-------TTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEE-E--TTTEEEE
T ss_pred ECCcchheeeccc-------ccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEE-c--CCCEEEE
Confidence 9999999987763 23559999997333 35545544332200 0235678898999765443 3 3457999
Q ss_pred EEcCCCeEEEee
Q 004816 327 WIESNNEVLAIY 338 (729)
Q Consensus 327 ~d~~~g~~~~l~ 338 (729)
+++++.....+.
T Consensus 210 ~~p~G~~~~~i~ 221 (246)
T PF08450_consen 210 FDPDGKLLREIE 221 (246)
T ss_dssp EETTSCEEEEEE
T ss_pred ECCCccEEEEEc
Confidence 999854444444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-09 Score=109.37 Aligned_cols=242 Identities=13% Similarity=0.099 Sum_probs=139.7
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCccc-CCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDI-TPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.++|.|.| .+.+||+++... .+++++..++ +.+.. .+.. . ......+.+..++.... .++
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~-----~i~r~~~~~g-~~~~~~~p~~--~--------~~~~~~d~~g~Lv~~~~--g~~ 88 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGG-----RIHRLDPETG-KKRVFPSPGG--F--------SSGALIDAGGRLIACEH--GVR 88 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCC-----eEEEecCCcC-ceEEEECCCC--c--------ccceeecCCCeEEEEcc--ccE
Confidence 48999999 899999998443 4888877632 22222 2222 1 01112233333444322 367
Q ss_pred EEeCCCCCCCC-eecCCCC-CCCceeeecceecCCCCEEEEEEec--cCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 169 KHSIDSKDSSP-LPITPDY-GEPLVSYADGIFDPRFNRYVTVRED--RRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 169 ~~d~~~~~~~~-~~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~--~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
+++++. +.. +.++... +.+..+.+|.+..|||+.++-.+.. ...........||+++.+++..+.+.......+
T Consensus 89 ~~~~~~--~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N 166 (307)
T COG3386 89 LLDPDT--GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN 166 (307)
T ss_pred EEeccC--CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC
Confidence 777665 444 5555432 3334678999999999975555541 001111123579999987665666555566778
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec-CCCCeeeeE--Eec-CCCCCccccccCceeCCCCcEEEEEecCCC
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRV--CVA-GFDPTIVESPTEPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~-~~g~~~~~~--~~~-~~~~~~~~~~~~~~wspDG~l~~~~~~~~g 320 (729)
+.+|||||+.++++.+. ...||.++++ .++...... ... ..+ +.....+-..||.++..... +
T Consensus 167 Gla~SpDg~tly~aDT~-------~~~i~r~~~d~~~g~~~~~~~~~~~~~~~----G~PDG~~vDadG~lw~~a~~--~ 233 (307)
T COG3386 167 GLAFSPDGKTLYVADTP-------ANRIHRYDLDPATGPIGGRRGFVDFDEEP----GLPDGMAVDADGNLWVAAVW--G 233 (307)
T ss_pred ceEECCCCCEEEEEeCC-------CCeEEEEecCcccCccCCcceEEEccCCC----CCCCceEEeCCCCEEEeccc--C
Confidence 99999999999888742 3458998886 234332221 221 222 45556677777765543333 3
Q ss_pred ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 321 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 321 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
...|.++++++.....+.-.....+.+.+.- . +.+.||+++.+.+
T Consensus 234 g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG-------~----~~~~L~iTs~~~~ 278 (307)
T COG3386 234 GGRVVRFNPDGKLLGEIKLPVKRPTNPAFGG-------P----DLNTLYITSARSG 278 (307)
T ss_pred CceEEEECCCCcEEEEEECCCCCCccceEeC-------C----CcCEEEEEecCCC
Confidence 4689999998555555441112222233221 0 4467888877653
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-08 Score=105.76 Aligned_cols=244 Identities=7% Similarity=0.011 Sum_probs=134.8
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCee-cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
..|+++++.++.....++.|+++++.+ ++... +... .....+.|+|||+.++...... ..|+++
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~-----~~~~~~~~~~~g~~l~~~~~~~--------~~l~~~ 100 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLAT--GEVIGTLPSG-----PDPELFALHPNGKILYIANEDD--------NLVTVI 100 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCC--CcEEEeccCC-----CCccEEEECCCCCEEEEEcCCC--------CeEEEE
Confidence 345555555656666677899999987 55433 3322 1124568999999765554322 469999
Q ss_pred EcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 227 ALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 227 dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
|+.+++...............|+|||+.+++...+ ...++.+|.. +++... ....+ .....+.|+
T Consensus 101 d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~-------~~~~~~~d~~-~~~~~~-~~~~~------~~~~~~~~s 165 (300)
T TIGR03866 101 DIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSET-------TNMAHFIDTK-TYEIVD-NVLVD------QRPRFAEFT 165 (300)
T ss_pred ECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecC-------CCeEEEEeCC-CCeEEE-EEEcC------CCccEEEEC
Confidence 99876543222222234568999999998876522 2236667876 555421 11111 223457899
Q ss_pred CCCc-EEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 307 SKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 307 pDG~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
|||+ +++.... . ..+.++|+++++.. .+....... .+.. .....+.|.+ +++.+++....++ .|.++|
T Consensus 166 ~dg~~l~~~~~~-~--~~v~i~d~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~s~---dg~~~~~~~~~~~--~i~v~d 235 (300)
T TIGR03866 166 ADGKELWVSSEI-G--GTVSVIDVATRKVIKKITFEIPGV-HPEA-VQPVGIKLTK---DGKTAFVALGPAN--RVAVVD 235 (300)
T ss_pred CCCCEEEEEcCC-C--CEEEEEEcCcceeeeeeeeccccc-cccc-CCccceEECC---CCCEEEEEcCCCC--eEEEEE
Confidence 9999 5554433 2 35778898887643 332111000 0000 0011234443 6666665543333 577778
Q ss_pred CCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 385 DFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 385 ~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.++++..........+..+ ..+++..++.++.. ...|.++|+.+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 236 AKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV--SNDVSVIDVAALKV 283 (300)
T ss_pred CCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC--CCeEEEEECCCCcE
Confidence 8877765332222234444 33344444444322 24688899888774
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=132.85 Aligned_cols=217 Identities=13% Similarity=0.097 Sum_probs=122.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+.+. ..|.||++||.+.+. ..|......| ..||.|+++|+||.|.+.... ....+
T Consensus 11 ~g~~l~~~~~g~~----------~~~~ivllHG~~~~~--~~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~---~~~~~ 74 (582)
T PRK05855 11 DGVRLAVYEWGDP----------DRPTVVLVHGYPDNH--EVWDGVAPLL-ADRFRVVAYDVRGAGRSSAPK---RTAAY 74 (582)
T ss_pred CCEEEEEEEcCCC----------CCCeEEEEcCCCchH--HHHHHHHHHh-hcceEEEEecCCCCCCCCCCC---ccccc
Confidence 7888887665331 247899999985443 4466677777 678999999999866543211 00011
Q ss_pred C-cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEEecccc-Chh-HHhhh--------
Q 004816 548 G-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA-DLS-MLRAE-------- 613 (729)
Q Consensus 548 ~-~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~---~~~~~a~v~~~~~~-d~~-~~~~~-------- 613 (729)
. ....+|+..+++.+. . ..++.|+|||+||.+++.++.. +.++...+..++.. +.. .+...
T Consensus 75 ~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (582)
T PRK05855 75 TLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRPTPR 149 (582)
T ss_pred CHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhcccccchh
Confidence 0 012455555555431 1 2359999999999999877764 34444444333211 000 00000
Q ss_pred -----cchhhh----------------------hhhhhhcC-------C--------------hhhhhhc----Cccccc
Q 004816 614 -----THKFES----------------------RYIDNLVG-------S--------------EKDYYEK----SPINFV 641 (729)
Q Consensus 614 -----~~~~~~----------------------~~~~~~~~-------~--------------~~~~~~~----sp~~~~ 641 (729)
...... ..+..... . ...+... ......
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (582)
T PRK05855 150 RLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRE 229 (582)
T ss_pred hhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCcc
Confidence 000000 00000000 0 0000000 000113
Q ss_pred CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 642 DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 642 ~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
..+++|+|+++|++|..+|+.....+.+.+. ..++++++ +||... .+....+.+.+.+|+.+.-
T Consensus 230 ~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~~~~ 293 (582)
T PRK05855 230 RYTDVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAEFVDAVE 293 (582)
T ss_pred CCccCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHHHHHhcc
Confidence 4478999999999999999988877765543 34666665 689654 4566778888889988743
|
|
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.3e-11 Score=116.20 Aligned_cols=210 Identities=18% Similarity=0.269 Sum_probs=85.9
Q ss_pred CCCEEEEEcCCCCCCcc-ccchhhhHHHhhCCcEEEEecCCCC-CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC--
Q 004816 491 KPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-- 566 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~-~~~~~~~~~la~~G~~v~~~d~rGs-~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-- 566 (729)
+..+||++-|-..+... ++...+++.|...||.|+.+.++-| .|+|..-.+ .+++|+.++++||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~--------~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLD--------RDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HH--------HHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhh--------hHHHHHHHHHHHHHHhhcc
Confidence 34589999885444333 4555678888778999999998753 455544332 35899999999999983
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh--C----CCcceEEEEeccccChhHHhhhcch---hhhh--hhhhhc--C--C---
Q 004816 567 KADEKRLCITGGSAGGYTTLAALA--F----RDTFKAGASLYGVADLSMLRAETHK---FESR--YIDNLV--G--S--- 628 (729)
Q Consensus 567 ~~d~~ri~i~G~S~GG~~a~~~~~--~----~~~~~a~v~~~~~~d~~~~~~~~~~---~~~~--~~~~~~--~--~--- 628 (729)
....++|+|||||-|+.-++.++. . ...+.++|+.+|++|-..+...... +... ....++ + +
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 235789999999999999999997 2 2679999999999986544322111 1000 000000 0 0
Q ss_pred hhhhh---h-cCcc----------------------------cccCCCCCCEEEEEeCCCCCCChH-HHHHHHHHHHhCC
Q 004816 629 EKDYY---E-KSPI----------------------------NFVDKFSCPIILFQGLEDKVVPPD-QARKIYKALKENG 675 (729)
Q Consensus 629 ~~~~~---~-~sp~----------------------------~~~~~i~~PvL~i~G~~D~~vp~~-~~~~~~~~l~~~g 675 (729)
+..+. . ..|+ ....++.+|+|++.+.+|..||.. +.+++.++++.+-
T Consensus 184 p~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~ 263 (303)
T PF08538_consen 184 PREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAAT 263 (303)
T ss_dssp ----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-------------------
T ss_pred eccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceeccccccccccccccccc
Confidence 00000 0 1111 126678899999999999999874 4466777777643
Q ss_pred C----CEEEEEECCCCcccCCccc---HHHHHHHHHHHHH
Q 004816 676 L----PVALVEYEGEQHGFRKAEN---IKFTLEQQMVFFA 708 (729)
Q Consensus 676 ~----~~~~~~~~~~gH~~~~~~~---~~~~~~~~~~fl~ 708 (729)
. .....++||+.|.+..++. .+...+++..||+
T Consensus 264 ~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 264 NPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccCC
Confidence 2 2346689999999876543 2356666666663
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-09 Score=107.46 Aligned_cols=252 Identities=13% Similarity=0.056 Sum_probs=136.7
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.+.++.|+| ++.+|.... ..+...+|. .. +++....++..... ....+.++++.++.....++.|+
T Consensus 32 ~~~~l~~~~dg~~l~~~~~---~~~~v~~~d--~~-~~~~~~~~~~~~~~-------~~~~~~~~g~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCAS---DSDTIQVID--LA-TGEVIGTLPSGPDP-------ELFALHPNGKILYIANEDDNLVT 98 (300)
T ss_pred CCCceEECCCCCEEEEEEC---CCCeEEEEE--CC-CCcEEEeccCCCCc-------cEEEECCCCCEEEEEcCCCCeEE
Confidence 456789999 666665543 234544444 33 12332222211111 11233344445555555567899
Q ss_pred EEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeee
Q 004816 169 KHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPR 247 (729)
Q Consensus 169 ~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~ 247 (729)
++|+.+ ++. ..+... .......|+|||+.+++..... ..++.++..+++...............
T Consensus 99 ~~d~~~--~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~--------~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (300)
T TIGR03866 99 VIDIET--RKVLAEIPVG-----VEPEGMAVSPDGKIVVNTSETT--------NMAHFIDTKTYEIVDNVLVDQRPRFAE 163 (300)
T ss_pred EEECCC--CeEEeEeeCC-----CCcceEEECCCCCEEEEEecCC--------CeEEEEeCCCCeEEEEEEcCCCccEEE
Confidence 999986 432 222211 2235678999999877765432 246667887765543222222334578
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCC--CCCccccccCceeCCCCcEEEEEecCCCceEEE
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF--DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 325 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~--~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~ 325 (729)
|+|||++|++.. .. ...|+++|++ +++.......... ... ......+.|+|||+.+|+... +...|.
T Consensus 164 ~s~dg~~l~~~~-~~------~~~v~i~d~~-~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~--~~~~i~ 232 (300)
T TIGR03866 164 FTADGKELWVSS-EI------GGTVSVIDVA-TRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALG--PANRVA 232 (300)
T ss_pred ECCCCCEEEEEc-CC------CCEEEEEEcC-cceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcC--CCCeEE
Confidence 999999887654 21 2459999998 6654221111110 000 012345789999995444433 224588
Q ss_pred EEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-Eeec
Q 004816 326 KWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLD 394 (729)
Q Consensus 326 ~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~~lt 394 (729)
++|.++++............ .+.|.+ +++.|+.....+| .|.++|+++++. +.+.
T Consensus 233 v~d~~~~~~~~~~~~~~~~~---------~~~~~~---~g~~l~~~~~~~~--~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLLVGQRVW---------QLAFTP---DEKYLLTTNGVSN--DVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEEeCCCcc---------eEEECC---CCCEEEEEcCCCC--eEEEEECCCCcEEEEEE
Confidence 88988877654332211122 233433 6777765554455 467778888774 4444
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-11 Score=124.44 Aligned_cols=219 Identities=20% Similarity=0.269 Sum_probs=129.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCC----cEEEEecCCCCCCCchhHHHh-
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDVNYGGSTGYGREFRER- 542 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G----~~v~~~d~rGs~g~g~~~~~~- 542 (729)
-|.....++|.|++. . +.+++|+|+++||.............++.+...| ..++.++..+.......|...
T Consensus 4 Lg~~~~~~VylP~~y--~--~~~~~PvlylldG~~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~ 79 (251)
T PF00756_consen 4 LGRDRRVWVYLPPGY--D--PSKPYPVLYLLDGQSGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPA 79 (251)
T ss_dssp TTEEEEEEEEECTTG--G--TTTTEEEEEEESHTTHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSB
T ss_pred cCCeEEEEEEECCCC--C--CCCCCEEEEEccCCccccccchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccc
Confidence 477888999999883 2 4788999999999501110111122333344443 556666654433111111110
Q ss_pred -----hccCCCcccHHHH--HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-HHhhh
Q 004816 543 -----LLGRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-MLRAE 613 (729)
Q Consensus 543 -----~~~~~~~~~~~D~--~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-~~~~~ 613 (729)
.....+...+.+. .+++.++.++..+++++.+|+|+||||+.|+.++. ||+.|.++++.+|..+.. .++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~ 159 (251)
T PF00756_consen 80 GSSRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGP 159 (251)
T ss_dssp CTTCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHH
T ss_pred ccccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCc
Confidence 0001111122332 35667777777777666999999999999999988 999999999999987654 11111
Q ss_pred cchhhhhhhhhhcCChhhhhhcCcccc-----cCCCCCCEEEEEeCCCCCCC----------hHHHHHHHHHHHhCCCCE
Q 004816 614 THKFESRYIDNLVGSEKDYYEKSPINF-----VDKFSCPIILFQGLEDKVVP----------PDQARKIYKALKENGLPV 678 (729)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~sp~~~-----~~~i~~PvL~i~G~~D~~vp----------~~~~~~~~~~l~~~g~~~ 678 (729)
.+...+...++... ...-..++++.+|+.|.... .....++.+.|+..|.+.
T Consensus 160 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 226 (251)
T PF00756_consen 160 -------------SDDEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKGIPH 226 (251)
T ss_dssp -------------STCGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEECTT
T ss_pred -------------CCcHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcCCCc
Confidence 01111222222221 12234578999999998332 123445555666677888
Q ss_pred EEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 679 ALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 679 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
.+..++| +|.+ ..+...+...+.||
T Consensus 227 ~~~~~~G-~H~~---~~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 227 TYHVFPG-GHDW---AYWRRRLPDALPWM 251 (251)
T ss_dssp ESEEEHS-ESSH---HHHHHHHHHHHHHH
T ss_pred eEEEecC-ccch---hhHHHHHHHHHhhC
Confidence 9999984 6754 34566666666664
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=122.82 Aligned_cols=190 Identities=19% Similarity=0.193 Sum_probs=106.1
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc------hh-HHHh------hc------cC----
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG------RE-FRER------LL------GR---- 546 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g------~~-~~~~------~~------~~---- 546 (729)
.++|+||+-||.. .....|...+..||++||.|+++++|...... .. .... .. ..
T Consensus 98 ~~~PvvIFSHGlg--g~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLG--GSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCC--cchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 6799999999973 44567888999999999999999999532211 10 0000 00 00
Q ss_pred --------CCcccHHHHHHHHHHHHh--------------------CCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEE
Q 004816 547 --------WGIVDVNDCCSCATFLVG--------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 598 (729)
Q Consensus 547 --------~~~~~~~D~~~~~~~l~~--------------------~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~ 598 (729)
+-.....|+..+++.|.+ ++.+|.++|+++|||+||.+++.++....+|+++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d~r~~~~ 255 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQDTRFKAG 255 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-TT--EE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhccCcceE
Confidence 001126677778877753 1346788999999999999999999877899999
Q ss_pred EEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCE
Q 004816 599 ASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 678 (729)
Q Consensus 599 v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~ 678 (729)
|++.|..-.. + .+. ...++.|+|+|+.+. . ....+...+.+ +...+...
T Consensus 256 I~LD~W~~Pl------------------~-~~~---------~~~i~~P~L~InSe~-f-~~~~~~~~~~~-~~~~~~~~ 304 (379)
T PF03403_consen 256 ILLDPWMFPL------------------G-DEI---------YSKIPQPLLFINSES-F-QWWENIFRMKK-VISNNKES 304 (379)
T ss_dssp EEES---TTS--------------------GGG---------GGG--S-EEEEEETT-T---HHHHHHHHT-T--TTS-E
T ss_pred EEeCCcccCC------------------C-ccc---------ccCCCCCEEEEECcc-c-CChhhHHHHHH-HhccCCCc
Confidence 9998853210 0 000 134678999998874 3 23333333333 33345567
Q ss_pred EEEEECCCCccc-C-----Cc----------------ccHHHHHHHHHHHHHHHhC
Q 004816 679 ALVEYEGEQHGF-R-----KA----------------ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 679 ~~~~~~~~gH~~-~-----~~----------------~~~~~~~~~~~~fl~~~l~ 712 (729)
.++.+.|..|.- . .+ .......+.+++||+++|+
T Consensus 305 ~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 305 RMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp EEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999951 1 01 1133456678999999987
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.2e-11 Score=106.18 Aligned_cols=203 Identities=13% Similarity=0.092 Sum_probs=123.3
Q ss_pred CEEEEEcCCCCCCccccchhhhHHH-hhCCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~l-a~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~ 570 (729)
-.|+++.|.-++ ....|.+....+ ...-+.+++.|.+|. |.+-. .....+. .-..|...+++-+... +.
T Consensus 43 ~~iLlipGalGs-~~tDf~pql~~l~k~l~~TivawDPpGY---G~SrP--P~Rkf~~~ff~~Da~~avdLM~aL---k~ 113 (277)
T KOG2984|consen 43 NYILLIPGALGS-YKTDFPPQLLSLFKPLQVTIVAWDPPGY---GTSRP--PERKFEVQFFMKDAEYAVDLMEAL---KL 113 (277)
T ss_pred ceeEeccccccc-ccccCCHHHHhcCCCCceEEEEECCCCC---CCCCC--CcccchHHHHHHhHHHHHHHHHHh---CC
Confidence 357777786433 344555533333 333499999999864 33211 1111111 1257777788777664 56
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC---hhHHh------------hhcchhhhhhhhhhc----C---
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSMLR------------AETHKFESRYIDNLV----G--- 627 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d---~~~~~------------~~~~~~~~~~~~~~~----~--- 627 (729)
+++.|+|+|-||.+|+.+|+ +++.+...|...+-.- ...+. .....++..|....+ .
T Consensus 114 ~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wv 193 (277)
T KOG2984|consen 114 EPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWV 193 (277)
T ss_pred CCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHH
Confidence 89999999999999998888 8888877777655321 11111 111112222211110 0
Q ss_pred C-hhhhhhc---Cc-ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHH
Q 004816 628 S-EKDYYEK---SP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQ 702 (729)
Q Consensus 628 ~-~~~~~~~---sp-~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~ 702 (729)
+ -..+... .- -.-+.+++||+||+||+.|+.|+..+..-+...++ -.+++++|.++|.|.- ...+++...
T Consensus 194 D~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~----~a~~~~~peGkHn~hL-rya~eFnkl 268 (277)
T KOG2984|consen 194 DVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKS----LAKVEIHPEGKHNFHL-RYAKEFNKL 268 (277)
T ss_pred HHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcc----cceEEEccCCCcceee-echHHHHHH
Confidence 0 0000000 00 11267899999999999999999887765555444 3489999999999854 345677778
Q ss_pred HHHHHHH
Q 004816 703 QMVFFAR 709 (729)
Q Consensus 703 ~~~fl~~ 709 (729)
+++||++
T Consensus 269 v~dFl~~ 275 (277)
T KOG2984|consen 269 VLDFLKS 275 (277)
T ss_pred HHHHHhc
Confidence 8888875
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.5e-10 Score=121.83 Aligned_cols=211 Identities=15% Similarity=0.115 Sum_probs=125.5
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc---hhhhHHHhhCCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---NLSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~---~~~~~~la~~G~~v~~~d~rGs~ 533 (729)
+|.++-+... .+..+.|.|... ....+.||++||.......... +.++.+|+++||.|+++|+||.+
T Consensus 163 Tpg~VV~~~~----~~eLi~Y~P~t~------~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg 232 (532)
T TIGR01838 163 TPGAVVFENE----LFQLIQYEPTTE------TVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPD 232 (532)
T ss_pred CCCeEEEECC----cEEEEEeCCCCC------cCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCC
Confidence 3444445442 344455777641 2223457788886332222221 25789999999999999999754
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHH----HHh-C-CCcceEEEEeccccCh
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA----ALA-F-RDTFKAGASLYGVADL 607 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~----~~~-~-~~~~~a~v~~~~~~d~ 607 (729)
.....+ .+.....+++.++++++.+. .+.+++.++|||+||.++.. ++. + ++++++++++....|+
T Consensus 233 ~s~~~~------~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 233 ASQADK------TFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred cccccC------ChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 332211 11122245688889988865 35689999999999998522 233 4 7789999988876654
Q ss_pred hHHhh---------------hc---------------------chhhhhhhhhhc-CCh---------------------
Q 004816 608 SMLRA---------------ET---------------------HKFESRYIDNLV-GSE--------------------- 629 (729)
Q Consensus 608 ~~~~~---------------~~---------------------~~~~~~~~~~~~-~~~--------------------- 629 (729)
..... .. ..+...+....+ ++.
T Consensus 305 ~~~G~l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~ 384 (532)
T TIGR01838 305 SDPGELGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMH 384 (532)
T ss_pred CCcchhhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHH
Confidence 32100 00 000010111000 100
Q ss_pred -----hhhhhcCc----------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 630 -----KDYYEKSP----------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 630 -----~~~~~~sp----------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
..|.++.. ...+.+|++|+|+++|++|.++|++.+..+.+.+. ..+.++++++||.
T Consensus 385 ~~~lr~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~----~~~~~vL~~sGHi 455 (532)
T TIGR01838 385 NFYLRNLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLG----GPKTFVLGESGHI 455 (532)
T ss_pred HHHHHHHHhcCCCcCCeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCC----CCEEEEECCCCCc
Confidence 01111111 11266789999999999999999999988877654 2356788999996
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.8e-08 Score=102.42 Aligned_cols=257 Identities=10% Similarity=0.046 Sum_probs=131.9
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
++++++.++......+.|..++++.. +..+.+..... ........++|||++|+...... ..|.+++++
T Consensus 42 ~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~~--~~~p~~i~~~~~g~~l~v~~~~~--------~~v~v~~~~ 110 (330)
T PRK11028 42 ISPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAESPL--PGSPTHISTDHQGRFLFSASYNA--------NCVSVSPLD 110 (330)
T ss_pred ECCCCCEEEEEECCCCcEEEEEECCC-CceEEeeeecC--CCCceEEEECCCCCEEEEEEcCC--------CeEEEEEEC
Confidence 44445556555555677877777531 43332221100 11235678999999876554322 457777775
Q ss_pred C-Cce---EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeee---EEecCCCCCccccccC
Q 004816 230 G-QNI---QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR---VCVAGFDPTIVESPTE 302 (729)
Q Consensus 230 ~-g~~---~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~---~~~~~~~~~~~~~~~~ 302 (729)
. +.. .....+........++|||++|+.... ....|+++|++..+.+... ....... .....
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g----~~p~~ 179 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-------KEDRIRLFTLSDDGHLVAQEPAEVTTVEG----AGPRH 179 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC-------CCCEEEEEEECCCCcccccCCCceecCCC----CCCce
Confidence 3 322 111222222334579999998876552 2345999999733443210 0011111 34467
Q ss_pred ceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeec---cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEE
Q 004816 303 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 379 (729)
Q Consensus 303 ~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ 379 (729)
+.|+|||+.+|+.+...+.-.+|.++..+++.+.+.. .......+.|.. .+.+.| +++.+|...+.++...
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~i~~~p---dg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA---DIHITP---DGRHLYACDRTASLIS 253 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce---eEEECC---CCCEEEEecCCCCeEE
Confidence 8999999966666552444445555443555433321 111112233321 344544 6666666544456667
Q ss_pred EEEEECCCCceEeeccC--CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcce
Q 004816 380 LGILDDFGHSLSLLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 434 (729)
Q Consensus 380 ly~~d~~~g~~~~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~ 434 (729)
+|.++.+++..+.+..- ......+ ..++++.+|.+...++.-.+|.++..++.++
T Consensus 254 v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~ 311 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLT 311 (330)
T ss_pred EEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence 77776666554433211 1111223 3334445555554444555777776666653
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=113.15 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=104.3
Q ss_pred cEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEE
Q 004816 522 WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS 600 (729)
Q Consensus 522 ~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~ 600 (729)
|.|+++|.||.+..... ....+.....+|+.+.++.+++...+ +++.++||||||.+++.++. +|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 78999999987654421 11122334588999999999887444 45999999999999999998 9999999999
Q ss_pred ecccc---C------hhH-Hhh-----hcch--------hhhhh------hhhh-cC------------C----------
Q 004816 601 LYGVA---D------LSM-LRA-----ETHK--------FESRY------IDNL-VG------------S---------- 628 (729)
Q Consensus 601 ~~~~~---d------~~~-~~~-----~~~~--------~~~~~------~~~~-~~------------~---------- 628 (729)
..+.. . +.. ... .... ..... .... .. .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 99851 0 000 000 0000 00000 0000 00 0
Q ss_pred ----hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 629 ----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 629 ----~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
...+...++...+.++++|+|+++|++|..+|++....+.+.+. ..+++++++.||..
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIP----NSQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHST----TEEEEEETTCCSTH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcC----CCEEEECCCCChHH
Confidence 00111122234467899999999999999999988888665554 46899999999974
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-07 Score=94.12 Aligned_cols=284 Identities=12% Similarity=0.058 Sum_probs=159.5
Q ss_pred CCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-E
Q 004816 79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-T 156 (729)
Q Consensus 79 lt~e~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (729)
++.-++......+.-+.|+| ++.+|-+. ++++.|...-++.+..+ |+...+ ... ...+..-+..+++.+ +
T Consensus 30 l~~~~~v~~~~nptyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~-G~Lt~l-n~~-----~~~g~~p~yvsvd~~g~ 101 (346)
T COG2706 30 LSLLQLVAELGNPTYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDD-GRLTFL-NRQ-----TLPGSPPCYVSVDEDGR 101 (346)
T ss_pred cchhhhccccCCCceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCC-CeEEEe-ecc-----ccCCCCCeEEEECCCCC
Confidence 44444444435677888999 55565554 45567887888887652 332222 110 011111133455544 4
Q ss_pred EEEEEC-CCCcEEEEeCCCCCCCCeecC---CCCCC-Ccee-----eecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 157 VIFSNY-KDQRLYKHSIDSKDSSPLPIT---PDYGE-PLVS-----YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 157 i~~~~~-~~~~l~~~d~~~~~~~~~~lt---~~~~~-~~~~-----~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
.+|+.. ..+.|-++.++.. |....+. ...+. +..+ .-...+.|||++|+.+.- . ...|+++
T Consensus 102 ~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-G-------~Dri~~y 172 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-G-------TDRIFLY 172 (346)
T ss_pred EEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-C-------CceEEEE
Confidence 555544 4567777777542 3332221 11100 0111 223459999998655532 2 2457777
Q ss_pred EcCCCceEEeee----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-CCCeeeeEEecCCCCC--cccc
Q 004816 227 ALNGQNIQVLVS----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPT--IVES 299 (729)
Q Consensus 227 dl~~g~~~~lt~----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-~g~~~~~~~~~~~~~~--~~~~ 299 (729)
+++.|.....+. ....-....|.|+||.. |+-..- +++|-++..+. .|++.++..+...+.+ ...+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~a-Y~v~EL------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYA-YLVNEL------NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEE-EEEecc------CCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 877775543322 11223456899999954 554222 24455555552 3665554433222111 0034
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEE
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 379 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ 379 (729)
...+..++||+++|.+++..+.-.+|.+|+.+|+...+.....+-.. ..+|.+.+ .++.|+...+++....
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~------PR~F~i~~---~g~~Liaa~q~sd~i~ 316 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQF------PRDFNINP---SGRFLIAANQKSDNIT 316 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcC------CccceeCC---CCCEEEEEccCCCcEE
Confidence 56678999999888888745556678899999987665522111111 23444543 6777787777888899
Q ss_pred EEEEECCCCceEeecc
Q 004816 380 LGILDDFGHSLSLLDI 395 (729)
Q Consensus 380 ly~~d~~~g~~~~lt~ 395 (729)
+|.+|.++|+++++..
T Consensus 317 vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 317 VFERDKETGRLTLLGR 332 (346)
T ss_pred EEEEcCCCceEEeccc
Confidence 9999999999988865
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=130.67 Aligned_cols=216 Identities=14% Similarity=0.138 Sum_probs=128.2
Q ss_pred CCEEEEEcCCCCCCccccch---hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcc-cHHHHHHHHHHHHhCCC
Q 004816 492 PPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSGK 567 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~---~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~ 567 (729)
.|.||++||.+.....+... .++.+|+++||.|+++|+. .++ .. .....+... .+.++.++++.+.+..
T Consensus 67 ~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G-~~~--~~---~~~~~~~l~~~i~~l~~~l~~v~~~~- 139 (994)
T PRK07868 67 GPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFG-SPD--KV---EGGMERNLADHVVALSEAIDTVKDVT- 139 (994)
T ss_pred CCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCC-CCC--hh---HcCccCCHHHHHHHHHHHHHHHHHhh-
Confidence 46799999986555444332 1478899999999999973 222 11 000011111 1223344444443332
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEEeccccChhH-----Hh----hh------------c--ch------
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADLSM-----LR----AE------------T--HK------ 616 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~-~~~~~a~v~~~~~~d~~~-----~~----~~------------~--~~------ 616 (729)
.+++.++|||+||.+++.++. + +++++.+|+++...|+.. +. .. . ..
T Consensus 140 --~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 217 (994)
T PRK07868 140 --GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDIPGWMARTG 217 (994)
T ss_pred --CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCCCHHHHHHH
Confidence 357999999999999988876 5 558999987665543210 00 00 0 00
Q ss_pred h--------hhhhh---hhhcC-----C---------hh---------------hhhh-cCcc----------cccCCCC
Q 004816 617 F--------ESRYI---DNLVG-----S---------EK---------------DYYE-KSPI----------NFVDKFS 645 (729)
Q Consensus 617 ~--------~~~~~---~~~~~-----~---------~~---------------~~~~-~sp~----------~~~~~i~ 645 (729)
+ ...+. ..+.+ + .. .+.. +... ..+.+|+
T Consensus 218 ~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i~ 297 (994)
T PRK07868 218 FQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQMVTLADIT 297 (994)
T ss_pred HHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCEEcchhhCC
Confidence 0 00000 00000 0 00 0000 0111 1267889
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEE-EEECCCCcc--cCCcccHHHHHHHHHHHHHHHhCCCCCCCCC
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL-VEYEGEQHG--FRKAENIKFTLEQQMVFFARVVGHFDVADEI 720 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~-~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~~ 720 (729)
+|+|+++|++|.++|++.+..+.+.+.. .++ ++++++||. +.......+.+..+.+|+.++-...+-++.+
T Consensus 298 ~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~~~~~~~~~ 371 (994)
T PRK07868 298 CPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEGDGDKPENI 371 (994)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhccCCCCCccc
Confidence 9999999999999999999998777643 355 577899997 3445566788999999999987644444333
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=93.48 Aligned_cols=183 Identities=20% Similarity=0.244 Sum_probs=119.3
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCC--CCCchhHHHhhccCCCcccH-HHHHHHHHHHHhCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS--TGYGREFRERLLGRWGIVDV-NDCCSCATFLVGSGK 567 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs--~g~g~~~~~~~~~~~~~~~~-~D~~~~~~~l~~~~~ 567 (729)
..-+||+.||...++........+..|+.+|+.|+.+++.-. --.|+ .... .+.... .....++-.|.+.
T Consensus 13 ~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~---rkPp--~~~~t~~~~~~~~~aql~~~-- 85 (213)
T COG3571 13 APVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGR---RKPP--PGSGTLNPEYIVAIAQLRAG-- 85 (213)
T ss_pred CCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccC---CCCc--CccccCCHHHHHHHHHHHhc--
Confidence 345788899987888888888888999999999999997411 11110 0011 111122 3334445555554
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEe-ccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCC
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASL-YGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF 644 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i 644 (729)
.+..+++|-|+||||-++.+.+. +.+ +.+.+++ +|+. ..+.++..+ ..|+..+
T Consensus 86 l~~gpLi~GGkSmGGR~aSmvade~~A~-i~~L~clgYPfh-------------------ppGKPe~~R----t~HL~gl 141 (213)
T COG3571 86 LAEGPLIIGGKSMGGRVASMVADELQAP-IDGLVCLGYPFH-------------------PPGKPEQLR----TEHLTGL 141 (213)
T ss_pred ccCCceeeccccccchHHHHHHHhhcCC-cceEEEecCccC-------------------CCCCcccch----hhhccCC
Confidence 45678999999999999988876 554 7777765 3332 122233222 2467889
Q ss_pred CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC---------CcccHHHHHHHHHHHHHH
Q 004816 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR---------KAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 645 ~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~---------~~~~~~~~~~~~~~fl~~ 709 (729)
++|+||+||+.|..-..++...+ . ...+.+++++.++.|.+. ..+..+...+.+..|.++
T Consensus 142 ~tPtli~qGtrD~fGtr~~Va~y--~---ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 142 KTPTLITQGTRDEFGTRDEVAGY--A---LSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred CCCeEEeecccccccCHHHHHhh--h---cCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHhh
Confidence 99999999999998777655222 1 224789999999999753 223344555666677654
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-09 Score=99.61 Aligned_cols=179 Identities=16% Similarity=0.162 Sum_probs=109.0
Q ss_pred EEEEcCCCCCCccccchhhhHHHhhCC--cEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 495 LVKSHGGPTSEARGILNLSIQYWTSRG--WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 495 vv~~hGg~~~~~~~~~~~~~~~la~~G--~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|+++||.-.+..........+++++.| ..+..+|++- ..+++...++.++++. .++.
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~~ 60 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPEN 60 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCCC
Confidence 799999855555555556777788776 4566666641 1345556666666653 2345
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchh-hhhhhhhhcC-ChhhhhhcCccccc-CCCCCCE
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKF-ESRYIDNLVG-SEKDYYEKSPINFV-DKFSCPI 648 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~sp~~~~-~~i~~Pv 648 (729)
+.|+|.|+||+.|.+++. ++ +++ |+++|...........-.. ...+...... ....+.+...+... ..-..++
T Consensus 61 ~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~~~~ 137 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNPERY 137 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCCccE
Confidence 999999999999999987 54 344 8889988765443221000 0001000000 11222221111111 1223589
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
++++++.|.++++..+.+.++. +..++.+|++|.|.+ ..+.+..+++|+
T Consensus 138 lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 138 LVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred EEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 9999999999999766555533 244566888999864 567888888886
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.4e-08 Score=95.92 Aligned_cols=218 Identities=11% Similarity=0.139 Sum_probs=136.5
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceE---EeeeCCCe----------eeeeeeCCCCCeEEEEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQ---VLVSGSDF----------YAFPRMDPRGERMAWIE 259 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~---~lt~~~~~----------~~~~~~SPDG~~la~~~ 259 (729)
...++++||++|+ +..-+. ..|-+..+.. |.+. ++....+. .-...++|||++|+...
T Consensus 92 ~yvsvd~~g~~vf-~AnY~~-------g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 92 CYVSVDEDGRFVF-VANYHS-------GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred eEEEECCCCCEEE-EEEccC-------ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 4567999999754 443332 3455555533 4332 22221111 22347899999998776
Q ss_pred ecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-
Q 004816 260 WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY- 338 (729)
Q Consensus 260 ~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~- 338 (729)
.. ..+|++++++ +|.+.......-. ++ .+...+.|.|+|+++|+...-++.-.+|.++...|+.++|-
T Consensus 164 LG-------~Dri~~y~~~-dg~L~~~~~~~v~-~G--~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 164 LG-------TDRIFLYDLD-DGKLTPADPAEVK-PG--AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred cC-------CceEEEEEcc-cCccccccccccC-CC--CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 42 2458999998 7876443222111 12 56678999999996665554377778888888778776654
Q ss_pred --ccCccccCCcccccCcceeeeeecCCCCEEEEEEEE-CCeEEEEEEECCCCceEeeccC--Ccc-eEEe-eeeCCEEE
Q 004816 339 --SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ-NGRSYLGILDDFGHSLSLLDIP--FTD-IDNI-TLGNDCLF 411 (729)
Q Consensus 339 --~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~-~g~~~ly~~d~~~g~~~~lt~~--~~~-v~~~-~~~~~~~~ 411 (729)
..+.++....|.. .++..+ +++.|| .++| ...-.+|.++.++|+++.+..- ... -+.+ ..+++.++
T Consensus 233 i~tlP~dF~g~~~~a---aIhis~---dGrFLY-asNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~L 305 (346)
T COG2706 233 IDTLPEDFTGTNWAA---AIHISP---DGRFLY-ASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFL 305 (346)
T ss_pred eccCccccCCCCcee---EEEECC---CCCEEE-EecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEE
Confidence 4455677777764 456653 555554 5554 4456788999999987755432 111 2333 45566666
Q ss_pred EEEeCCCCCceEEEEEcCCCcceeee
Q 004816 412 VEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 412 ~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
+.+........+|++|.++|+++.+.
T Consensus 306 iaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 306 IAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred EEEccCCCcEEEEEEcCCCceEEecc
Confidence 66666666678999999999876543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.8e-09 Score=114.49 Aligned_cols=171 Identities=9% Similarity=-0.002 Sum_probs=111.0
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCC----CCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPN----MPW 267 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~----~~~ 267 (729)
...++.+||||++++|+....... .....+||+++.. ++.++++.+.. ...|.|||||++|+|+.....- ...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~-~d~~s~Lwv~~~g-g~~~~lt~g~~-~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGA-PDPASSLWVGPLG-GVAVQVLEGHS-LTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCC-CCcceEEEEEeCC-CcceeeecCCC-CCCceECCCCCceEEEecCcceEEEeccC
Confidence 457889999999999998533211 1245789999974 55688887764 7889999999999998632110 001
Q ss_pred CCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEE---EEcCCCeEEEe------
Q 004816 268 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK---WIESNNEVLAI------ 337 (729)
Q Consensus 268 ~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~---~d~~~g~~~~l------ 337 (729)
...+||+++++ .++... ..+ ..+..+.|||||+ ++|+.. + +|++ +...+|+ ..|
T Consensus 428 ~~gql~~~~vd-~ge~~~-----~~~----g~Issl~wSpDG~RiA~i~~---g--~v~Va~Vvr~~~G~-~~l~~~~~l 491 (591)
T PRK13616 428 ATGQLARTPVD-ASAVAS-----RVP----GPISELQLSRDGVRAAMIIG---G--KVYLAVVEQTEDGQ-YALTNPREV 491 (591)
T ss_pred CCceEEEEecc-Cchhhh-----ccC----CCcCeEEECCCCCEEEEEEC---C--EEEEEEEEeCCCCc-eeecccEEe
Confidence 24578888887 555421 222 4578899999999 888873 3 4554 4445665 333
Q ss_pred eccCcc-ccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeecc
Q 004816 338 YSLDAE-FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 338 ~~~~~~-~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~ 395 (729)
.....+ .....|. ++..|+... ..+...+|.+++++...+.+..
T Consensus 492 ~~~l~~~~~~l~W~-------------~~~~L~V~~-~~~~~~v~~v~vDG~~~~~~~~ 536 (591)
T PRK13616 492 GPGLGDTAVSLDWR-------------TGDSLVVGR-SDPEHPVWYVNLDGSNSDALPS 536 (591)
T ss_pred ecccCCccccceEe-------------cCCEEEEEe-cCCCCceEEEecCCccccccCC
Confidence 222212 2344565 455566554 4566779999999877665444
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.7e-10 Score=103.92 Aligned_cols=229 Identities=16% Similarity=0.177 Sum_probs=134.8
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~ 540 (729)
..++.. ||..+.+..|...+ +.+-.+++-|++ +.....|..+++..+.+||.|+.+||||.+++...-.
T Consensus 8 ~~l~~~-DG~~l~~~~~pA~~---------~~~g~~~va~a~-Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~ 76 (281)
T COG4757 8 AHLPAP-DGYSLPGQRFPADG---------KASGRLVVAGAT-GVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASL 76 (281)
T ss_pred cccccC-CCccCccccccCCC---------CCCCcEEecccC-CcchhHhHHHHHHhhccCceEEEEecccccCCCcccc
Confidence 557777 99999988885433 122223333442 2333456778888899999999999999877543322
Q ss_pred Hh---hccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEecccc--ChhHHhhh--
Q 004816 541 ER---LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVA--DLSMLRAE-- 613 (729)
Q Consensus 541 ~~---~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~--d~~~~~~~-- 613 (729)
.. ...+|. ..|+.++++++.+.. ..-....+|||+||.+.-.+..++..-.++|...+.. -+......
T Consensus 77 ~~~~~~~~DwA---~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~~~k~~a~~vfG~gagwsg~m~~~~~l~ 151 (281)
T COG4757 77 SGSQWRYLDWA---RLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQHPKYAAFAVFGSGAGWSGWMGLRERLG 151 (281)
T ss_pred ccCccchhhhh---hcchHHHHHHHHhhC--CCCceEEeeccccceeecccccCcccceeeEeccccccccchhhhhccc
Confidence 21 122333 688999999998852 2456889999999997666655773222233222211 10000000
Q ss_pred ----------cchhhhhhhh-hhcCC--------hhh---------hhhcCcc-----cccCCCCCCEEEEEeCCCCCCC
Q 004816 614 ----------THKFESRYID-NLVGS--------EKD---------YYEKSPI-----NFVDKFSCPIILFQGLEDKVVP 660 (729)
Q Consensus 614 ----------~~~~~~~~~~-~~~~~--------~~~---------~~~~sp~-----~~~~~i~~PvL~i~G~~D~~vp 660 (729)
.-.+...|+. .+.|. .+. |.-.+|. .-.+.+++|++.+...+|+-+|
T Consensus 152 ~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P 231 (281)
T COG4757 152 AVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAP 231 (281)
T ss_pred ceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCC
Confidence 0000111111 11110 011 1111221 1145678999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEECCC----CcccCCcccHHHHHHHHHHHH
Q 004816 661 PDQARKIYKALKENGLPVALVEYEGE----QHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 661 ~~~~~~~~~~l~~~g~~~~~~~~~~~----gH~~~~~~~~~~~~~~~~~fl 707 (729)
+...+.+.+..+.+ +.+.+.++.. ||.-.-.+..+...+++++||
T Consensus 232 ~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 232 PASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 99999999998876 6677777755 786222222356667777776
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=114.85 Aligned_cols=218 Identities=18% Similarity=0.122 Sum_probs=132.1
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
...+++.....+.++..+++.|...... ....+.|+|++.||. +.....|.+.++.+++.||.|..+++.|+.--+.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~-~~~~~~PlvvlshG~--Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~ 114 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGT-VALYLLPLVVLSHGS--GSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGA 114 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccc-cccCcCCeEEecCCC--CCCccchhhhHHHHhhCceEEEeccCCCcccccC
Confidence 3455555543577888899988763210 011478999999997 3446778889999999999999999998654332
Q ss_pred hHHHhhccC----CCcccHHHHHHHHHHHHhC---C----CCCCCcEEEEEcChHHHHHHHHHh-CCCc---ceEEE---
Q 004816 538 EFRERLLGR----WGIVDVNDCCSCATFLVGS---G----KADEKRLCITGGSAGGYTTLAALA-FRDT---FKAGA--- 599 (729)
Q Consensus 538 ~~~~~~~~~----~~~~~~~D~~~~~~~l~~~---~----~~d~~ri~i~G~S~GG~~a~~~~~-~~~~---~~a~v--- 599 (729)
.-....... -......|+...+++|.+. + .+|..+|+++|||+||++++.++. +.+. .+.+.
T Consensus 115 ~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~~~~~~~~C~~~~ 194 (365)
T COG4188 115 PAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELDAEALLQHCESAS 194 (365)
T ss_pred ChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccccHHHHHHHhhhhh
Confidence 222222111 0112368899999999887 4 578999999999999999999886 4321 11111
Q ss_pred --Ee-ccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCc----------c-------cccCCCCCCEEEEEeCCCCCC
Q 004816 600 --SL-YGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSP----------I-------NFVDKFSCPIILFQGLEDKVV 659 (729)
Q Consensus 600 --~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp----------~-------~~~~~i~~PvL~i~G~~D~~v 659 (729)
+. -+..+............ ....|...+| . .-+.+++.|++++.|..|...
T Consensus 195 ~~~~~~~~~~~~~l~q~~av~~---------~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~~a~s~D~~a 265 (365)
T COG4188 195 RICLDPPGLNGRLLNQCAAVWL---------PRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLLAAGSADGFA 265 (365)
T ss_pred hcccCCCCcChhhhcccccccc---------chhhhccccccceeeeeccCCcccccccccceeeecceeeecccccccC
Confidence 01 11111111111100000 0111111111 1 225678899999999999977
Q ss_pred ChH-HHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 660 PPD-QARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 660 p~~-~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
|+. +....+..|.. ....+...|++.|.
T Consensus 266 P~~~~~~~~f~~l~g--~~k~~~~vp~a~h~ 294 (365)
T COG4188 266 PPVTEQIRPFGYLPG--ALKYLRLVPGATHF 294 (365)
T ss_pred CcccccccccccCCc--chhheeecCCCccc
Confidence 663 33344444433 22367888999995
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.2e-10 Score=100.15 Aligned_cols=206 Identities=17% Similarity=0.237 Sum_probs=126.5
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHH-hhCCcEEEEec--CCCCCCCch--hH------
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVN--YGGSTGYGR--EF------ 539 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l-a~~G~~v~~~d--~rGs~g~g~--~~------ 539 (729)
.+..-+|.|+.. +.+++.|++.++-|-........-..-.|.. ..+|++|+.|| .||----|. +|
T Consensus 27 ~Mtf~vylPp~a----~~~k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 27 SMTFGVYLPPDA----PRGKRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred ceEEEEecCCCc----ccCCcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 455566777652 2467799999998863222111112233444 45799999999 555211111 11
Q ss_pred ---HHhhccCCCcccHHHHHHHHHHHHh---------CCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC
Q 004816 540 ---RERLLGRWGIVDVNDCCSCATFLVG---------SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD 606 (729)
Q Consensus 540 ---~~~~~~~~~~~~~~D~~~~~~~l~~---------~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d 606 (729)
.++....|.. -..+.+|+.+ .-.+|+.|++|.||||||+-|+.... .+.+++.+.+.+|+.+
T Consensus 103 GFYvnAt~epw~~-----~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~N 177 (283)
T KOG3101|consen 103 GFYVNATQEPWAK-----HYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICN 177 (283)
T ss_pred eeEEecccchHhh-----hhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccC
Confidence 1111111211 1222222222 23578999999999999999987776 8999999999999988
Q ss_pred hhHHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCCCC---CCEEEEEeCCCCCCChHH--HHHHHHHHHhCC-CCEE
Q 004816 607 LSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS---CPIILFQGLEDKVVPPDQ--ARKIYKALKENG-LPVA 679 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~---~PvL~i~G~~D~~vp~~~--~~~~~~~l~~~g-~~~~ 679 (729)
..... +....+...+| +...|.++++..-+++++ .-+||-+|..|...+ +| .+.+.++.+... .++.
T Consensus 178 P~~cp-----WGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~~~~~v~ 251 (283)
T KOG3101|consen 178 PINCP-----WGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA-EQLLPENLLEACKATWQAPVV 251 (283)
T ss_pred cccCc-----chHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh-hhcChHHHHHHhhccccccEE
Confidence 75432 12222222333 567788888866666554 458999999998765 22 344555555333 5788
Q ss_pred EEEECCCCcccC
Q 004816 680 LVEYEGEQHGFR 691 (729)
Q Consensus 680 ~~~~~~~gH~~~ 691 (729)
+..-+|-+|...
T Consensus 252 ~r~~~gyDHSYy 263 (283)
T KOG3101|consen 252 FRLQEGYDHSYY 263 (283)
T ss_pred EEeecCCCccee
Confidence 888899999753
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-07 Score=100.03 Aligned_cols=273 Identities=10% Similarity=0.081 Sum_probs=149.0
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC--ceEEEE--CCEEEEEEC
Q 004816 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIF--GDTVIFSNY 162 (729)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~--~~~i~~~~~ 162 (729)
...+..+.++| ++.+|.+.....+.+....++.+.++ |+...+- .+...|. +.++.+ ++.++....
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~--------~~~~~g~~p~~i~~~~~g~~l~vany 106 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLN--------SVPSGGSSPCHIAVDPDGRFLYVANY 106 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEE--------EEEESSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEee--------eeccCCCCcEEEEEecCCCEEEEEEc
Confidence 35677889999 77777776433246666666665541 2222111 1111122 223443 446666666
Q ss_pred CCCcEEEEeCCCCCCCCeecCC-------C---CCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 163 KDQRLYKHSIDSKDSSPLPITP-------D---YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~-------~---~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
..+.+.+++++.. +....... . ............++|||+++ |+.+-. ...|++++++...
T Consensus 107 ~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v-~v~dlG-------~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 107 GGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV-YVPDLG-------ADRVYVYDIDDDT 177 (345)
T ss_dssp TTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE-EEEETT-------TTEEEEEEE-TTS
T ss_pred cCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEE-EEEecC-------CCEEEEEEEeCCC
Confidence 7788888888652 33222210 0 00111223457899999986 454433 2457777766543
Q ss_pred --eEEe---e-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec-CCCCeeeeEEecCCCCCcc--ccccCc
Q 004816 233 --IQVL---V-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIV--ESPTEP 303 (729)
Q Consensus 233 --~~~l---t-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~-~~g~~~~~~~~~~~~~~~~--~~~~~~ 303 (729)
.... . +....-....|+|||++++.+. .. ...|.++++. .+|.+...........++. .....+
T Consensus 178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-EL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred ceEEEeeccccccCCCCcEEEEcCCcCEEEEec-CC------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 4331 1 1112234568999999876654 32 3457777776 3455443333322211110 134567
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
..+|||+.+|++++..+.-.+|.+|.++|+.+.+......-.. ...+.+.+ +++.|++....++...+|.+
T Consensus 251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~------Pr~~~~s~---~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF------PRHFAFSP---DGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS------EEEEEE-T---TSSEEEEEETTTTEEEEEEE
T ss_pred EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC------ccEEEEeC---CCCEEEEEecCCCeEEEEEE
Confidence 8999999777777734445566666677877765422111001 23455554 77778877777888999999
Q ss_pred ECCCCceEeec
Q 004816 384 DDFGHSLSLLD 394 (729)
Q Consensus 384 d~~~g~~~~lt 394 (729)
|.++|.++.+.
T Consensus 322 d~~tG~l~~~~ 332 (345)
T PF10282_consen 322 DPDTGKLTPVG 332 (345)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCcEEEec
Confidence 99999987664
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.8e-09 Score=97.22 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=94.9
Q ss_pred EEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEE
Q 004816 495 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 574 (729)
Q Consensus 495 vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~ 574 (729)
|+++||..++.....+.++.+.+... +.|-.+|.. .-+.++....++..+.. + .+.+.
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~~------------------~P~~~~W~~~l~~~i~~--~-~~~~i 58 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDWD------------------NPDLDEWVQALDQAIDA--I-DEPTI 58 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC--T------------------S--HHHHHHHHHHCCHC----TTTEE
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEeccccC------------------CCCHHHHHHHHHHHHhh--c-CCCeE
Confidence 68899986666666667777777777 777777651 01133334333333332 3 35699
Q ss_pred EEEcChHHHHHHHHH-h-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEE
Q 004816 575 ITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQ 652 (729)
Q Consensus 575 i~G~S~GG~~a~~~~-~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~ 652 (729)
++|||+|+.++++++ . ...+++++++.+|+........ ........+. ....+..|.+++.
T Consensus 59 lVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~~----------------~~~~~~f~~~-p~~~l~~~~~via 121 (171)
T PF06821_consen 59 LVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEPF----------------PPELDGFTPL-PRDPLPFPSIVIA 121 (171)
T ss_dssp EEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHCC----------------TCGGCCCTTS-HCCHHHCCEEEEE
T ss_pred EEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccch----------------hhhccccccC-cccccCCCeEEEE
Confidence 999999999999999 5 7889999999999743201000 0000111111 0122345669999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
+++|+.||++.+.++++.|.. +++.++++||..
T Consensus 122 S~nDp~vp~~~a~~~A~~l~a-----~~~~~~~~GHf~ 154 (171)
T PF06821_consen 122 SDNDPYVPFERAQRLAQRLGA-----ELIILGGGGHFN 154 (171)
T ss_dssp ETTBSSS-HHHHHHHHHHHT------EEEEETS-TTSS
T ss_pred cCCCCccCHHHHHHHHHHcCC-----CeEECCCCCCcc
Confidence 999999999999999999954 899999999953
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-08 Score=92.64 Aligned_cols=207 Identities=15% Similarity=0.203 Sum_probs=120.5
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCC----Cchh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG----YGRE 538 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g----~g~~ 538 (729)
+... +|..+..|--.|++.. .++.|.||+..|. +.....|..++.+|+.+||.|+.+|.--.-| .=.+
T Consensus 7 i~~~-~~~~I~vwet~P~~~~-----~~~~~tiliA~Gf--~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~e 78 (294)
T PF02273_consen 7 IRLE-DGRQIRVWETRPKNNE-----PKRNNTILIAPGF--ARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINE 78 (294)
T ss_dssp EEET-TTEEEEEEEE---TTS--------S-EEEEE-TT---GGGGGGHHHHHHHHTTT--EEEE---B-----------
T ss_pred eEcC-CCCEEEEeccCCCCCC-----cccCCeEEEecch--hHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCChhh
Confidence 3444 8999999999998733 5667999999887 5556778889999999999999999643222 1111
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchhh
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFE 618 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~~ 618 (729)
|... ...+|+..+++||...+ ..+++++..|.-|-+|+..+... .....|...|+.++..-......
T Consensus 79 ftms-------~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~i-~lsfLitaVGVVnlr~TLe~al~-- 145 (294)
T PF02273_consen 79 FTMS-------IGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAADI-NLSFLITAVGVVNLRDTLEKALG-- 145 (294)
T ss_dssp --HH-------HHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS---SEEEEES--S-HHHHHHHHHS--
T ss_pred cchH-------HhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhcc-CcceEEEEeeeeeHHHHHHHHhc--
Confidence 1111 12688999999999775 46799999999999999999866 47788888899998765432211
Q ss_pred hhhhhhhcC-------------Chhhhh----------hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC
Q 004816 619 SRYIDNLVG-------------SEKDYY----------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG 675 (729)
Q Consensus 619 ~~~~~~~~~-------------~~~~~~----------~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g 675 (729)
..|+....+ +.+.|. -.|....++.+.+|++.+++.+|.-|...+..++...+..
T Consensus 146 ~Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s-- 223 (294)
T PF02273_consen 146 YDYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINS-- 223 (294)
T ss_dssp S-GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT--
T ss_pred cchhhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCC--
Confidence 122221110 011111 1233456888899999999999999988777777665544
Q ss_pred CCEEEEEECCCCcccCC
Q 004816 676 LPVALVEYEGEQHGFRK 692 (729)
Q Consensus 676 ~~~~~~~~~~~gH~~~~ 692 (729)
..++++.++|..|.+..
T Consensus 224 ~~~klysl~Gs~HdL~e 240 (294)
T PF02273_consen 224 NKCKLYSLPGSSHDLGE 240 (294)
T ss_dssp --EEEEEETT-SS-TTS
T ss_pred CceeEEEecCccchhhh
Confidence 36799999999998754
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.8e-09 Score=107.65 Aligned_cols=246 Identities=19% Similarity=0.185 Sum_probs=163.3
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch----hhhHHHhhCCcEEEEec
Q 004816 453 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN----LSIQYWTSRGWAFVDVN 528 (729)
Q Consensus 453 ~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~----~~~~~la~~G~~v~~~d 528 (729)
...-+.|...+.+. ||.-+. +.-.|.. .+++|+|++.||--.+...+... .++-.|+++||.|..-|
T Consensus 43 ~~gy~~E~h~V~T~-DgYiL~-lhRIp~~-------~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN 113 (403)
T KOG2624|consen 43 KYGYPVEEHEVTTE-DGYILT-LHRIPRG-------KKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGN 113 (403)
T ss_pred HcCCceEEEEEEcc-CCeEEE-EeeecCC-------CCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeec
Confidence 33446788999998 998555 4444544 26789999999965554444322 35667899999999999
Q ss_pred CCCCCCCchhHHHhhc--------cCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC---cce
Q 004816 529 YGGSTGYGREFRERLL--------GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD---TFK 596 (729)
Q Consensus 529 ~rGs~g~g~~~~~~~~--------~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~---~~~ 596 (729)
.|| ..|++....... -.|-+....|+.+.+||+++.- ..+++..+|||.|+...+.++. +|+ +++
T Consensus 114 ~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~ 190 (403)
T KOG2624|consen 114 NRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIK 190 (403)
T ss_pred CcC-cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhhh
Confidence 999 556654332221 1133334789999999999973 5689999999999999888876 544 789
Q ss_pred EEEEeccccChh---HH----------------------------------hhhcch---hh----hhhhhhhcC-----
Q 004816 597 AGASLYGVADLS---ML----------------------------------RAETHK---FE----SRYIDNLVG----- 627 (729)
Q Consensus 597 a~v~~~~~~d~~---~~----------------------------------~~~~~~---~~----~~~~~~~~~----- 627 (729)
..++++|+.-+. .+ ...... .. ..++....|
T Consensus 191 ~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~ 270 (403)
T KOG2624|consen 191 SFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNN 270 (403)
T ss_pred eeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHh
Confidence 999998876332 00 000000 00 000000000
Q ss_pred -------------------------------------------Chhhhhh-cCcccccCCCCCCEEEEEeCCCCCCChHH
Q 004816 628 -------------------------------------------SEKDYYE-KSPINFVDKFSCPIILFQGLEDKVVPPDQ 663 (729)
Q Consensus 628 -------------------------------------------~~~~~~~-~sp~~~~~~i~~PvL~i~G~~D~~vp~~~ 663 (729)
+...|.. ..|.+.+.++++|+.++.|.+|.++.+++
T Consensus 271 ~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~D 350 (403)
T KOG2624|consen 271 WNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPED 350 (403)
T ss_pred hhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHH
Confidence 1112221 24566688899999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEECCCCcc-c-CCcccHHHHHHHHHHHHHHHh
Q 004816 664 ARKIYKALKENGLPVALVEYEGEQHG-F-RKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 664 ~~~~~~~l~~~g~~~~~~~~~~~gH~-~-~~~~~~~~~~~~~~~fl~~~l 711 (729)
...+...+..... ...+.+++-.|. | .......+.+..+++.+++..
T Consensus 351 V~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 351 VLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred HHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 9988888876544 333347777885 2 334556788888998888765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-07 Score=96.42 Aligned_cols=259 Identities=14% Similarity=0.100 Sum_probs=139.0
Q ss_pred CCEEEEEECC---CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 154 GDTVIFSNYK---DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 154 ~~~i~~~~~~---~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
++.|+..... .+.|..+.++..++..+.+....- .+......+++|||++|+...-.. ..+.+++++.
T Consensus 48 ~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~--------g~v~v~~l~~ 118 (345)
T PF10282_consen 48 GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGG--------GSVSVFPLDD 118 (345)
T ss_dssp SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTT--------TEEEEEEECT
T ss_pred CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccC--------CeEEEEEccC
Confidence 4455555553 456766665531033433332110 012234567999999865543222 4576777765
Q ss_pred -CceEEe---ee----C-------CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCC-CCeeeeEEecCCCC
Q 004816 231 -QNIQVL---VS----G-------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDP 294 (729)
Q Consensus 231 -g~~~~l---t~----~-------~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~-g~~~~~~~~~~~~~ 294 (729)
|.+... .. + ....-...++|||++|+.... ....|++++++.. +++.....+.-..
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-------G~D~v~~~~~~~~~~~l~~~~~~~~~~- 190 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-------GADRVYVYDIDDDTGKLTPVDSIKVPP- 190 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-------TTTEEEEEEE-TTS-TEEEEEEEECST-
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-------CCCEEEEEEEeCCCceEEEeecccccc-
Confidence 544332 21 1 112234689999999876552 2345888888722 2354322222111
Q ss_pred CccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeec---cCccccCCcccccCcceeeeeecCCCCEEEEE
Q 004816 295 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 371 (729)
Q Consensus 295 ~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~ 371 (729)
+ ....++.|+|||+++|+.+...+.-.++.++..+++.+.+.. ......... ....+.+.+ |++.||++
T Consensus 191 G--~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~i~isp---dg~~lyvs 262 (345)
T PF10282_consen 191 G--SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN---APAEIAISP---DGRFLYVS 262 (345)
T ss_dssp T--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS---SEEEEEE-T---TSSEEEEE
T ss_pred C--CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC---CceeEEEec---CCCEEEEE
Confidence 1 456778999999955555553555556666655776554431 111111111 123455654 67767666
Q ss_pred EEECCeEEEEEEECCCCceEeeccC---CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 372 YRQNGRSYLGILDDFGHSLSLLDIP---FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 372 s~~~g~~~ly~~d~~~g~~~~lt~~---~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
....+.-.+|.++.++|.++.+..- ...-..+ ..+++++++.+......-.+|.+|.++|.++.+.
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 5555666778777778887766431 1223444 4455566666666666667888888899876554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=120.52 Aligned_cols=130 Identities=25% Similarity=0.299 Sum_probs=92.6
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhC-C-cEEEEecCC-CCCCCchhHHHhhccC
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-G-WAFVDVNYG-GSTGYGREFRERLLGR 546 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G-~~v~~~d~r-Gs~g~g~~~~~~~~~~ 546 (729)
..+...+|.|.... +.++.|+||++|||+......... ....++.. + ++|+.+||| |..|+.........++
T Consensus 77 dcl~l~i~~p~~~~----~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n 151 (493)
T cd00312 77 DCLYLNVYTPKNTK----PGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGN 151 (493)
T ss_pred cCCeEEEEeCCCCC----CCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcc
Confidence 45777788886521 246789999999997654433322 23444443 3 999999999 7666654332222333
Q ss_pred CCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEEeccccCh
Q 004816 547 WGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVADL 607 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---~~~~~a~v~~~~~~d~ 607 (729)
+| ..|+..+++|+.++ ...|+++|.|+|+|+||+++..++.. ..+|+++|+.+|....
T Consensus 152 ~g---~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~ 215 (493)
T cd00312 152 YG---LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215 (493)
T ss_pred hh---HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccC
Confidence 43 78999999999875 35799999999999999999888874 4579999998886543
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.3e-07 Score=93.59 Aligned_cols=266 Identities=11% Similarity=0.038 Sum_probs=137.4
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.+..+.++| ++.+|.... ..+....|..+.+ |....+-..... .......+.++++.++.....++.|.
T Consensus 36 ~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~--g~l~~~~~~~~~-----~~p~~i~~~~~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVR---PEFRVLSYRIADD--GALTFAAESPLP-----GSPTHISTDHQGRFLFSASYNANCVS 105 (330)
T ss_pred CCccEEECCCCCEEEEEEC---CCCcEEEEEECCC--CceEEeeeecCC-----CCceEEEECCCCCEEEEEEcCCCeEE
Confidence 456788999 666766543 2355555666522 222111100000 01112233344555655555577888
Q ss_pred EEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceE-------EeeeC
Q 004816 169 KHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQ-------VLVSG 239 (729)
Q Consensus 169 ~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~-------~lt~~ 239 (729)
+++++.. +.. +.+..... ........++|||++++.+.... ..|+++|+++ +... .+..+
T Consensus 106 v~~~~~~-g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~--------~~v~v~d~~~~g~l~~~~~~~~~~~~g 174 (330)
T PRK11028 106 VSPLDKD-GIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLKE--------DRIRLFTLSDDGHLVAQEPAEVTTVEG 174 (330)
T ss_pred EEEECCC-CCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCCC--------CEEEEEEECCCCcccccCCCceecCCC
Confidence 8888631 222 11111100 11124457999999865544322 5688888875 3322 11112
Q ss_pred CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-CCCeeeeEEecCCCCC--ccccccCceeCCCCcEEEEEe
Q 004816 240 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPT--IVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 240 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-~g~~~~~~~~~~~~~~--~~~~~~~~~wspDG~l~~~~~ 316 (729)
. ......|+|||++|+.+.. ....|.+++++. +++......+...... .......+.++|||+.+|+++
T Consensus 175 ~-~p~~~~~~pdg~~lyv~~~-------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 175 A-GPRHMVFHPNQQYAYCVNE-------LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred C-CCceEEECCCCCEEEEEec-------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 2 2345689999998876542 134588888862 2443222222111100 001223467899999666666
Q ss_pred cCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec
Q 004816 317 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 317 ~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
+..+...++.++.+++..+.+-..... .....+.+.+ +++.+|.+...++.-.+|.++.+++.++.+.
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~~-------~~p~~~~~~~---dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPTE-------TQPRGFNIDH---SGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEecc-------ccCCceEECC---CCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 534445555555454443332211100 0122345554 7777877776678888888887777766553
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.1e-09 Score=98.31 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=117.1
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCccc
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD 551 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~ 551 (729)
....++.|.. .+.+|+|+++||. ......|....+.++++||.|++++.-...+ .-+..+
T Consensus 33 kpLlI~tP~~-------~G~yPVilF~HG~--~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~E 92 (307)
T PF07224_consen 33 KPLLIVTPSE-------AGTYPVILFLHGF--NLYNSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDE 92 (307)
T ss_pred CCeEEecCCc-------CCCccEEEEeech--hhhhHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHH
Confidence 3445566755 5789999999997 4556678889999999999999999753211 113345
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCcEEEEEcChHHHHHHHHHh-C--CCcceEEEEeccccChhHHhhhcchhhhh
Q 004816 552 VNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAALA-F--RDTFKAGASLYGVADLSMLRAETHKFESR 620 (729)
Q Consensus 552 ~~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~~a~~~~~-~--~~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 620 (729)
+++..++++||.+. -..+..+++++|||.||.+|..++. + .-.|.+.|.+.|+.-........
T Consensus 93 i~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~~t~------ 166 (307)
T PF07224_consen 93 IKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGKQTP------ 166 (307)
T ss_pred HHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCCCCC------
Confidence 78889999999774 1256789999999999999988886 4 23588888888876543211111
Q ss_pred hhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCC-------CCCChH--HHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 621 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLED-------KVVPPD--QARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 621 ~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D-------~~vp~~--~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
+..+ .+.|.. =.+..|+++|...-- +-|.+. +-++|++..+. ++...+..+-||.
T Consensus 167 --------P~iL-ty~p~S--F~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~---p~~hfV~~dYGHm 230 (307)
T PF07224_consen 167 --------PPIL-TYVPQS--FDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKP---PCAHFVAKDYGHM 230 (307)
T ss_pred --------CCee-ecCCcc--cccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhcc---cceeeeecccccc
Confidence 1110 011111 134589999854332 112222 45677777664 6777777888895
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.3e-09 Score=105.42 Aligned_cols=218 Identities=20% Similarity=0.327 Sum_probs=138.2
Q ss_pred CCCCCEEEEEcCCCCCCcc-ccchhhhHHHhhCCcEEEEecCC--------------CC-CCCchhHHHhh----ccCCC
Q 004816 489 EEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYG--------------GS-TGYGREFRERL----LGRWG 548 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~-~~~~~~~~~la~~G~~v~~~d~r--------------Gs-~g~g~~~~~~~----~~~~~ 548 (729)
+++.|+++++||-...... ......-......|++++.+|-. |. .++=..|.... ..+|.
T Consensus 51 ~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~ 130 (316)
T COG0627 51 GRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWE 130 (316)
T ss_pred CCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchh
Confidence 5678999999986322211 11223334445678888887422 21 11111111111 11222
Q ss_pred cccHHHHHHHHHHHHhCCCCCC--CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc----chhhhhh
Q 004816 549 IVDVNDCCSCATFLVGSGKADE--KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET----HKFESRY 621 (729)
Q Consensus 549 ~~~~~D~~~~~~~l~~~~~~d~--~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~----~~~~~~~ 621 (729)
..-.+++.+ .+.+....+. ++.+|+||||||+-|+.++. ||++|+.+.+.+|+.+........ ..+...+
T Consensus 131 tfl~~ELP~---~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~ 207 (316)
T COG0627 131 TFLTQELPA---LWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKA 207 (316)
T ss_pred HHHHhhhhH---HHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCcc
Confidence 222222222 3333344454 38999999999999999998 889999999999998876332221 1112222
Q ss_pred hhhhcCCh--hhhhhcCcccccCC--------------CCCCEEEEEeCCCCCCC--hHHHHHHHHHHHhCCCCEEEEEE
Q 004816 622 IDNLVGSE--KDYYEKSPINFVDK--------------FSCPIILFQGLEDKVVP--PDQARKIYKALKENGLPVALVEY 683 (729)
Q Consensus 622 ~~~~~~~~--~~~~~~sp~~~~~~--------------i~~PvL~i~G~~D~~vp--~~~~~~~~~~l~~~g~~~~~~~~ 683 (729)
...++|.. ..+.+++|...+++ ...++++-+|..|.... ......+.++++..|.+..+...
T Consensus 208 ~~~~~G~~~~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~ 287 (316)
T COG0627 208 FNAMLGPDSDPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQ 287 (316)
T ss_pred HHHhcCCCccccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeC
Confidence 33344432 35677777766653 34678888999998753 34578999999999999999999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
++..|.+ ..+...++..+.|+...|+
T Consensus 288 ~~G~Hsw---~~w~~~l~~~~~~~a~~l~ 313 (316)
T COG0627 288 PGGDHSW---YFWASQLADHLPWLAGALG 313 (316)
T ss_pred CCCCcCH---HHHHHHHHHHHHHHHHHhc
Confidence 8899976 4567888899999998876
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-08 Score=109.53 Aligned_cols=165 Identities=11% Similarity=0.094 Sum_probs=109.7
Q ss_pred CceEEEECCEEEEEE-------CCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCC---CC
Q 004816 147 GGAFRIFGDTVIFSN-------YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ---DA 216 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~-------~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~---~~ 216 (729)
...++++++.++|+. +...+||+.+.. +..++++.+ .....|+|||||++|+|+.+.... ..
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g---g~~~~lt~g-----~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG---GVAVQVLEG-----HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCC---CcceeeecC-----CCCCCceECCCCCceEEEecCcceEEEec
Confidence 445677788899987 223489999974 556888865 236889999999999998653210 00
Q ss_pred CCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec--CCCCe--ee-eEEecC
Q 004816 217 LNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDV--YK-RVCVAG 291 (729)
Q Consensus 217 ~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~--~~g~~--~~-~~~~~~ 291 (729)
.....+||++++++++.++ ...+....++|||||++|||+.. .+||+.-+. .+|+. .. +.+..+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~---------g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG---------GKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC---------CEEEEEEEEeCCCCceeecccEEeecc
Confidence 0123689999999887765 33345788999999999999981 358873332 14541 11 112333
Q ss_pred CCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 292 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 292 ~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
.. .....+.|..|++|+.... .+...++++++++...+.
T Consensus 495 l~----~~~~~l~W~~~~~L~V~~~--~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 495 LG----DTAVSLDWRTGDSLVVGRS--DPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred cC----CccccceEecCCEEEEEec--CCCCceEEEecCCccccc
Confidence 32 3346789999999665543 355779999998765444
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-08 Score=96.73 Aligned_cols=192 Identities=16% Similarity=0.216 Sum_probs=123.0
Q ss_pred CCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc--------------hhHHHh-----------
Q 004816 488 PEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG--------------REFRER----------- 542 (729)
Q Consensus 488 ~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g--------------~~~~~~----------- 542 (729)
+++++|+||+-||-. ..+..|+.+.-.+|++||.|+++..|-....- .+|..-
T Consensus 114 k~~k~PvvvFSHGLg--gsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLG--GSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccc--cchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 368899999999973 34567788888999999999999999643211 111110
Q ss_pred hccCCCcccHHHHHHHHHHHHh---------------------CCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEe
Q 004816 543 LLGRWGIVDVNDCCSCATFLVG---------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASL 601 (729)
Q Consensus 543 ~~~~~~~~~~~D~~~~~~~l~~---------------------~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~ 601 (729)
++...-...+.+|..|++-|.+ ++.+|..+++++|||+||.+++........|+++|+.
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~FrcaI~l 271 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTDFRCAIAL 271 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccccceeeeeee
Confidence 0000001126777777776655 3457888999999999999998888866689999998
Q ss_pred ccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEE
Q 004816 602 YGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 681 (729)
Q Consensus 602 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 681 (729)
.+..-... . .+..+++.|+|+|.-+ |.. - .++....++....+..-.++
T Consensus 272 D~WM~Pl~-------------------~---------~~~~~arqP~~finv~-~fQ-~-~en~~vmKki~~~n~g~~~i 320 (399)
T KOG3847|consen 272 DAWMFPLD-------------------Q---------LQYSQARQPTLFINVE-DFQ-W-NENLLVMKKIESQNEGNHVI 320 (399)
T ss_pred eeeecccc-------------------h---------hhhhhccCCeEEEEcc-ccc-c-hhHHHHHHhhhCCCccceEE
Confidence 76421110 0 1233567899998833 322 2 23334444444444444677
Q ss_pred EECCCCcc-cC--------------------C-cccHHHHHHHHHHHHHHHhC
Q 004816 682 EYEGEQHG-FR--------------------K-AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 682 ~~~~~gH~-~~--------------------~-~~~~~~~~~~~~~fl~~~l~ 712 (729)
.+.|.=|. |. . .+......+..++||++++.
T Consensus 321 t~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d 373 (399)
T KOG3847|consen 321 TLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLD 373 (399)
T ss_pred EEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhh
Confidence 78787774 11 0 12345667788999999975
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.2e-08 Score=105.12 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=104.4
Q ss_pred hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCccc-HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHH--
Q 004816 511 NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA-- 587 (729)
Q Consensus 511 ~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~-~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~-- 587 (729)
..++++|.++||.|+.++.+.-+.. ...++..+ ++.+.++++.+.+. ...++|.++|+|+||.+++.
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~--------~r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~ 306 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKA--------HREWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALV 306 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChh--------hcCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHH
Confidence 3578999999999999999863321 12232111 34567777777665 44678999999999999886
Q ss_pred --HHh-CCC-cceEEEEeccccChhHH------h--------hh----cc------------------hhhhhhhhh-hc
Q 004816 588 --ALA-FRD-TFKAGASLYGVADLSML------R--------AE----TH------------------KFESRYIDN-LV 626 (729)
Q Consensus 588 --~~~-~~~-~~~a~v~~~~~~d~~~~------~--------~~----~~------------------~~~~~~~~~-~~ 626 (729)
+++ +++ +++.+++.....|+..- . .. .. .+....... +.
T Consensus 307 a~~aA~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yll 386 (560)
T TIGR01839 307 GHLQALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLL 386 (560)
T ss_pred HHHHhcCCCCceeeEEeeecccccCCCCcchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhc
Confidence 444 775 79999988776654310 0 00 00 000000000 01
Q ss_pred CC-------------------------hhhhhhcCccc-----------ccCCCCCCEEEEEeCCCCCCChHHHHHHHHH
Q 004816 627 GS-------------------------EKDYYEKSPIN-----------FVDKFSCPIILFQGLEDKVVPPDQARKIYKA 670 (729)
Q Consensus 627 ~~-------------------------~~~~~~~sp~~-----------~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~ 670 (729)
++ .+.|.++.... .+++|++|+|++.|+.|.++|++.+..+.+.
T Consensus 387 g~~p~~fdll~Wn~D~t~lPg~~~~e~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l 466 (560)
T TIGR01839 387 GNEPPAFDILYWNNDTTRLPAAFHGDLLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALL 466 (560)
T ss_pred CCCcchhhHHHHhCcCccchHHHHHHHHHHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHH
Confidence 10 01122222111 2678999999999999999999999999887
Q ss_pred HHhCCCCEEEEEECCCCcc
Q 004816 671 LKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 671 l~~~g~~~~~~~~~~~gH~ 689 (729)
+.. +++++..++ ||.
T Consensus 467 ~gs---~~~fvl~~g-GHI 481 (560)
T TIGR01839 467 LGG---KRRFVLSNS-GHI 481 (560)
T ss_pred cCC---CeEEEecCC-Ccc
Confidence 643 678888864 784
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-06 Score=86.69 Aligned_cols=252 Identities=12% Similarity=0.045 Sum_probs=129.3
Q ss_pred EEEECCEEEEEEC---------CCCcEEEEeCCCCCCC-CeecCCCCCCC---ceeeecceecCCCCEEEEEEeccCCCC
Q 004816 150 FRIFGDTVIFSNY---------KDQRLYKHSIDSKDSS-PLPITPDYGEP---LVSYADGIFDPRFNRYVTVREDRRQDA 216 (729)
Q Consensus 150 ~~~~~~~i~~~~~---------~~~~l~~~d~~~~~~~-~~~lt~~~~~~---~~~~~~~~~SPdG~~l~~~~~~~~~~~ 216 (729)
++++++.++.... ++..|-++|+.+ .+ ...|..++.+. ......+.+||||++++....+.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p---- 126 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP---- 126 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC----
Confidence 6666667766665 556899999987 43 33343221100 11224678999999866553332
Q ss_pred CCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCee--eeEEecCCCC
Q 004816 217 LNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY--KRVCVAGFDP 294 (729)
Q Consensus 217 ~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~--~~~~~~~~~~ 294 (729)
...+-++|+++++...-..-++...-+..++++..+. +. ...+..+.++.+|+.. ....+...+
T Consensus 127 ---~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~-~~---------Dg~~~~v~~d~~g~~~~~~~~vf~~~~- 192 (352)
T TIGR02658 127 ---SPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMH-CR---------DGSLAKVGYGTKGNPKIKPTEVFHPED- 192 (352)
T ss_pred ---CCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEE-ee---------cCceEEEEecCCCceEEeeeeeecCCc-
Confidence 2578999999887643222222111122222211111 11 1112222222233321 111221211
Q ss_pred CccccccCceeCC-CCcEEEEEecCCCceEEEEEEcCCCeEEEeec---cCccccCCcccccC-cceeeeeecCCCCEEE
Q 004816 295 TIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGI-NSYEIIQSHGEKNLIA 369 (729)
Q Consensus 295 ~~~~~~~~~~wsp-DG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~-~~~~~l~~~~~~~~l~ 369 (729)
+ .-..+|.+++ ||+.+|.+.. ..++.+|+.+.+...+.. .........|.|+. ..+.+.+ +++++|
T Consensus 193 ~--~v~~rP~~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~---dg~~ly 263 (352)
T TIGR02658 193 E--YLINHPAYSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR---ARDRIY 263 (352)
T ss_pred c--ccccCCceEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC---CCCEEE
Confidence 1 2234565666 8888888765 578888976544333221 01111122466543 2245544 778888
Q ss_pred EEEE-------ECCeEEEEEEECCCCceE-eeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 370 CSYR-------QNGRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 370 ~~s~-------~~g~~~ly~~d~~~g~~~-~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+... .++..+|+++|.++++.. .+..+. ....+ +.+++-++|.++.. ...+..+|..+++.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~--s~~VsViD~~t~k~ 334 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTG--DKTLYIFDAETGKE 334 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCC--CCcEEEEECcCCeE
Confidence 7553 233468999999988754 444333 33344 55555355555432 23588899888753
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-07 Score=98.76 Aligned_cols=218 Identities=10% Similarity=0.016 Sum_probs=134.2
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCC---CCC
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNM---PWD 268 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~---~~~ 268 (729)
....++||||++|+|..+..+.+ ...|+++|+++|+... ..... ...++.|++||+.++|+..+.... ...
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e----~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSE----WYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSS----EEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeeeeECCCCCEEEEEecCCCCc----eEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 35678999999999998877654 4789999999985432 11111 122389999999999999777542 111
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCc-eEEEEEEcCCC-----eEEEeeccC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF-WNLHKWIESNN-----EVLAIYSLD 341 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~-~~l~~~d~~~g-----~~~~l~~~~ 341 (729)
..+||+..+. ++......++.+.+.. .....+..|+||+ +++.+.. ... ..+|.+++..+ +.+.|....
T Consensus 201 ~~~v~~~~~g-t~~~~d~lvfe~~~~~--~~~~~~~~s~d~~~l~i~~~~-~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 201 PRQVYRHKLG-TPQSEDELVFEEPDEP--FWFVSVSRSKDGRYLFISSSS-GTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CEEEEEEETT-S-GGG-EEEEC-TTCT--TSEEEEEE-TTSSEEEEEEES-SSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CcEEEEEECC-CChHhCeeEEeecCCC--cEEEEEEecCcccEEEEEEEc-cccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 5679999987 5543334555555421 1134567899999 5555555 344 78999999875 566666322
Q ss_pred ccccCCcccccCcceeeeeecCCCCEEEEEEEECC-eEEEEEEECCCCc---eE-eeccCCc--ceEEeeeeCCEEEEEE
Q 004816 342 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDDFGHS---LS-LLDIPFT--DIDNITLGNDCLFVEG 414 (729)
Q Consensus 342 ~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g-~~~ly~~d~~~g~---~~-~lt~~~~--~v~~~~~~~~~~~~~~ 414 (729)
.... .+.-. .++.+|+.++.+. ...|+.++++... .+ .|..+.. .+..+...++.+++..
T Consensus 277 ~~~~---------~~v~~----~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~ 343 (414)
T PF02897_consen 277 DGVE---------YYVDH----HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY 343 (414)
T ss_dssp SS-E---------EEEEE----ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE
T ss_pred CceE---------EEEEc----cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE
Confidence 1110 00101 4566777777543 4789999998776 23 4444433 4566666667666554
Q ss_pred eCCCCCceEEEEEcC-CCcc
Q 004816 415 ASGVEPSSVAKVTLD-DHKL 433 (729)
Q Consensus 415 ~~~~~~~~ly~~d~~-~~~~ 433 (729)
. .+...+|+++++. +...
T Consensus 344 ~-~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 344 R-ENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp E-ETTEEEEEEEETT-TEEE
T ss_pred E-ECCccEEEEEECCCCcEE
Confidence 4 4556689999988 4443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.8e-08 Score=93.38 Aligned_cols=129 Identities=18% Similarity=0.168 Sum_probs=83.9
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhC-CcEEEEecCCCCC
Q 004816 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGST 533 (729)
Q Consensus 455 ~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G~~v~~~d~rGs~ 533 (729)
+...+.+.+... ++ .+..++-.|+. +..|++++.||+..+ .-.|...++.+.++ -..|+++|.||.|
T Consensus 47 Fdekedv~i~~~-~~-t~n~Y~t~~~~--------t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRgHG 114 (343)
T KOG2564|consen 47 FDEKEDVSIDGS-DL-TFNVYLTLPSA--------TEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRGHG 114 (343)
T ss_pred hccccccccCCC-cc-eEEEEEecCCC--------CCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccccC
Confidence 334455666554 33 67777776642 446999999998443 45566667777664 5667999999766
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEec
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLY 602 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~ 602 (729)
..--+-..... ......|+.+.++++... .+.+|+++||||||.++...+. -|. +.+++.+.
T Consensus 115 eTk~~~e~dlS---~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 115 ETKVENEDDLS---LETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred ccccCChhhcC---HHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 53222211111 112368888888888754 3568999999999999987775 354 55555543
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.2e-08 Score=88.58 Aligned_cols=115 Identities=24% Similarity=0.283 Sum_probs=87.5
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCC
Q 004816 566 GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF 644 (729)
Q Consensus 566 ~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i 644 (729)
..++.+||++-|.|+||.+++.++. ++..+.+.+..+++........ ...+ + .. +
T Consensus 88 ~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~---------~~~~-----------~--~~-~- 143 (206)
T KOG2112|consen 88 NGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIGL---------PGWL-----------P--GV-N- 143 (206)
T ss_pred cCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhhc---------cCCc-----------c--cc-C-
Confidence 3578899999999999999999987 7766676666666543111000 0000 0 00 1
Q ss_pred CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 645 ~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.+|+++.||+.|++||..-.++..+.|+.++..++++.|++.+|.... +.+..+..|+.+
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999997543 556677788776
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.5e-06 Score=84.80 Aligned_cols=264 Identities=12% Similarity=0.085 Sum_probs=145.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
..+..+.|+| ++.++... .+|...+|..... .....+.... .......+..+ ..++....++.
T Consensus 10 ~~i~~~~~~~~~~~l~~~~----~~g~i~i~~~~~~--~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGS----GDGTIKVWDLETG--ELLRTLKGHT---------GPVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred CCEEEEEEcCCCCEEEEee----cCcEEEEEEeeCC--CcEEEEecCC---------cceeEEEECCCCCEEEEEcCCCe
Confidence 4567899999 66665543 3567777766433 1111121111 11112333322 24455556789
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAF 245 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~ 245 (729)
|+++++.++ .....+... ........|+|+++.++....+ ..|+++++.+++...... .......
T Consensus 75 i~i~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~i~~ 140 (289)
T cd00200 75 IRLWDLETG-ECVRTLTGH----TSYVSSVAFSPDGRILSSSSRD---------KTIKVWDVETGKCLTTLRGHTDWVNS 140 (289)
T ss_pred EEEEEcCcc-cceEEEecc----CCcEEEEEEcCCCCEEEEecCC---------CeEEEEECCCcEEEEEeccCCCcEEE
Confidence 999999862 233444433 2356778899998765544312 468899998665544333 3445677
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNL 324 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l 324 (729)
..|+|+++.|+... ....|+++|+. +++. ...+.... ..+..+.|+|+++ +++.... + .|
T Consensus 141 ~~~~~~~~~l~~~~--------~~~~i~i~d~~-~~~~--~~~~~~~~----~~i~~~~~~~~~~~l~~~~~~--~--~i 201 (289)
T cd00200 141 VAFSPDGTFVASSS--------QDGTIKLWDLR-TGKC--VATLTGHT----GEVNSVAFSPDGEKLLSSSSD--G--TI 201 (289)
T ss_pred EEEcCcCCEEEEEc--------CCCcEEEEEcc-cccc--ceeEecCc----cccceEEECCCcCEEEEecCC--C--cE
Confidence 89999988666443 12348999987 5543 33333333 4567889999998 5555432 3 46
Q ss_pred EEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcceEE
Q 004816 325 HKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDN 402 (729)
Q Consensus 325 ~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~ 402 (729)
.++|..+++..... ....... .+.|. +++.+++....+|...+| +..+++ ...+......+..
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~---------~~~~~----~~~~~~~~~~~~~~i~i~--~~~~~~~~~~~~~~~~~i~~ 266 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVN---------SVAFS----PDGYLLASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTS 266 (289)
T ss_pred EEEECCCCceecchhhcCCceE---------EEEEc----CCCcEEEEEcCCCcEEEE--EcCCceeEEEccccCCcEEE
Confidence 67777765544333 2221222 23333 335566665556655555 555444 3444433445655
Q ss_pred e-eeeCCEEEEEEe
Q 004816 403 I-TLGNDCLFVEGA 415 (729)
Q Consensus 403 ~-~~~~~~~~~~~~ 415 (729)
+ ..+++..++.++
T Consensus 267 ~~~~~~~~~l~~~~ 280 (289)
T cd00200 267 LAWSPDGKRLASGS 280 (289)
T ss_pred EEECCCCCEEEEec
Confidence 5 333334444443
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-07 Score=89.05 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=75.8
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
+....+||-+||.|++..+ |....+.|.+.|+.++.+||+|.+-..... . .. ..-.+-...++.|+++-.+
T Consensus 32 gs~~gTVv~~hGsPGSH~D--FkYi~~~l~~~~iR~I~iN~PGf~~t~~~~-~---~~---~~n~er~~~~~~ll~~l~i 102 (297)
T PF06342_consen 32 GSPLGTVVAFHGSPGSHND--FKYIRPPLDEAGIRFIGINYPGFGFTPGYP-D---QQ---YTNEERQNFVNALLDELGI 102 (297)
T ss_pred CCCceeEEEecCCCCCccc--hhhhhhHHHHcCeEEEEeCCCCCCCCCCCc-c---cc---cChHHHHHHHHHHHHHcCC
Confidence 4455689999999988644 455778899999999999999865322111 1 11 1234556666777777666
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
+ +++.++|||.|+-.|++++. +| ..++++++|+
T Consensus 103 ~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 103 K-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred C-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 5 89999999999999999998 75 4577777764
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.2e-08 Score=91.02 Aligned_cols=196 Identities=17% Similarity=0.163 Sum_probs=105.9
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC--
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK-- 567 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~-- 567 (729)
.+.-++.+.|.|+.. ..|..+...+-. -+.++.+.|+|-+. .+.+ --..|+.+.++.|...-.
T Consensus 6 ~~~~L~cfP~AGGsa---~~fr~W~~~lp~-~iel~avqlPGR~~---r~~e--------p~~~di~~Lad~la~el~~~ 70 (244)
T COG3208 6 ARLRLFCFPHAGGSA---SLFRSWSRRLPA-DIELLAVQLPGRGD---RFGE--------PLLTDIESLADELANELLPP 70 (244)
T ss_pred CCceEEEecCCCCCH---HHHHHHHhhCCc-hhheeeecCCCccc---ccCC--------cccccHHHHHHHHHHHhccc
Confidence 334456666665332 334444443333 58899999986443 2211 224666666676665522
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh----CCCcceEEEEe---ccccChhHHhhhcchhhhhhhhh----------hcCChh
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA----FRDTFKAGASL---YGVADLSMLRAETHKFESRYIDN----------LVGSEK 630 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~----~~~~~~a~v~~---~~~~d~~~~~~~~~~~~~~~~~~----------~~~~~~ 630 (729)
.-.+..+++||||||.+|.-++. ..-...+.... .|..+..... .+.-+..++.. ++++++
T Consensus 71 ~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i--~~~~D~~~l~~l~~lgG~p~e~led~E 148 (244)
T COG3208 71 LLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQI--HHLDDADFLADLVDLGGTPPELLEDPE 148 (244)
T ss_pred cCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCc--cCCCHHHHHHHHHHhCCCChHHhcCHH
Confidence 22357999999999999988875 11112222222 2211110000 00001111111 112333
Q ss_pred hhhhcCcc-----------cc--cCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHH
Q 004816 631 DYYEKSPI-----------NF--VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIK 697 (729)
Q Consensus 631 ~~~~~sp~-----------~~--~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~ 697 (729)
.+.-.-|+ .+ -..+.+|+.++.|++|..|..++...+.+..+. .+++..|+| ||.|.+ +...
T Consensus 149 l~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdG-gHFfl~-~~~~ 223 (244)
T COG3208 149 LMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDG-GHFFLN-QQRE 223 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecC-cceehh-hhHH
Confidence 22222221 11 246789999999999999988777777666553 789999986 898754 3333
Q ss_pred HHHHHHHHHH
Q 004816 698 FTLEQQMVFF 707 (729)
Q Consensus 698 ~~~~~~~~fl 707 (729)
+..+.+.+.+
T Consensus 224 ~v~~~i~~~l 233 (244)
T COG3208 224 EVLARLEQHL 233 (244)
T ss_pred HHHHHHHHHh
Confidence 4444444443
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-06 Score=84.49 Aligned_cols=115 Identities=22% Similarity=0.240 Sum_probs=74.8
Q ss_pred HHHHHHH-HHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhh
Q 004816 554 DCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD 631 (729)
Q Consensus 554 D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (729)
.+..-+. |+.++..++.++.+|+|||+||.+++.++. +|+.|...++.+|...+... ..
T Consensus 119 fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n~-------------------~~ 179 (264)
T COG2819 119 FLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNE-------------------AI 179 (264)
T ss_pred HHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCCH-------------------HH
Confidence 3344444 444457789999999999999999999987 99999999999996544321 11
Q ss_pred hhhcCcccccCCCCCCEEEEEeCC--CC---C---CChHHHHHHHHHHHh-CCCCEEEEEECCCCcc
Q 004816 632 YYEKSPINFVDKFSCPIILFQGLE--DK---V---VPPDQARKIYKALKE-NGLPVALVEYEGEQHG 689 (729)
Q Consensus 632 ~~~~sp~~~~~~i~~PvL~i~G~~--D~---~---vp~~~~~~~~~~l~~-~g~~~~~~~~~~~gH~ 689 (729)
+....-.... + ..++.+..|.. |. . ....++.+..+.+++ .|..+.+..+|+++|+
T Consensus 180 l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~ 244 (264)
T COG2819 180 LREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHG 244 (264)
T ss_pred hccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEeccccccccc
Confidence 1111110111 2 44555554443 32 1 223456666667777 7888899999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.7e-06 Score=78.57 Aligned_cols=230 Identities=10% Similarity=0.026 Sum_probs=135.2
Q ss_pred EEEEEECCCCcEEEEeCCCCC---C-CCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC
Q 004816 156 TVIFSNYKDQRLYKHSIDSKD---S-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~---~-~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g 231 (729)
.++++..++..+.+|++...+ | ..++++.+ ..++.+..+|+||++.+-...+ ..|.++|+++|
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH----sH~v~dv~~s~dg~~alS~swD---------~~lrlWDl~~g 95 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH----SHFVSDVVLSSDGNFALSASWD---------GTLRLWDLATG 95 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeecc----ceEecceEEccCCceEEecccc---------ceEEEEEecCC
Confidence 567777777778888875411 2 24566655 5788999999999975444443 46888999998
Q ss_pred ceEEeeeCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 232 NIQVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 232 ~~~~lt~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
+.++...+. ....+.++|||.++|+--+. ...|-++++- ++.. .+...+... ..+..++|+|+..
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn~qivSGSr--------DkTiklwnt~-g~ck--~t~~~~~~~---~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDNRQIVSGSR--------DKTIKLWNTL-GVCK--YTIHEDSHR---EWVSCVRFSPNES 161 (315)
T ss_pred cEEEEEEecCCceEEEEecCCCceeecCCC--------cceeeeeeec-ccEE--EEEecCCCc---CcEEEEEEcCCCC
Confidence 877665544 34567899999999975442 2347777776 3322 333333312 4567889999974
Q ss_pred -EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 311 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 311 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
.++++.... ..+-++|+++-+.+.-...... -.+.+.+. .++.+..+..++|..-|| |++.++
T Consensus 162 ~p~Ivs~s~D--ktvKvWnl~~~~l~~~~~gh~~--------~v~t~~vS----pDGslcasGgkdg~~~Lw--dL~~~k 225 (315)
T KOG0279|consen 162 NPIIVSASWD--KTVKVWNLRNCQLRTTFIGHSG--------YVNTVTVS----PDGSLCASGGKDGEAMLW--DLNEGK 225 (315)
T ss_pred CcEEEEccCC--ceEEEEccCCcchhhccccccc--------cEEEEEEC----CCCCEEecCCCCceEEEE--EccCCc
Confidence 444433213 3455567776555443321110 11233444 445666666667765555 555554
Q ss_pred eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 390 LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 390 ~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
--.--.....|.++ +.+...+++.+. .. .+-.+|++++.
T Consensus 226 ~lysl~a~~~v~sl~fspnrywL~~at-~~---sIkIwdl~~~~ 265 (315)
T KOG0279|consen 226 NLYSLEAFDIVNSLCFSPNRYWLCAAT-AT---SIKIWDLESKA 265 (315)
T ss_pred eeEeccCCCeEeeEEecCCceeEeecc-CC---ceEEEeccchh
Confidence 32222334556666 555555544433 22 26667777765
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=94.23 Aligned_cols=208 Identities=16% Similarity=0.112 Sum_probs=121.1
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
-++.|.++++||--++. ..|......|+.. |-.|+.+|.|-.|- +....... .....+|+...++.......
T Consensus 49 ~~~~Pp~i~lHGl~GS~--~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~---Sp~~~~h~--~~~ma~dv~~Fi~~v~~~~~ 121 (315)
T KOG2382|consen 49 LERAPPAIILHGLLGSK--ENWRSVAKNLSRKLGRDVYAVDVRNHGS---SPKITVHN--YEAMAEDVKLFIDGVGGSTR 121 (315)
T ss_pred cCCCCceEEecccccCC--CCHHHHHHHhcccccCceEEEecccCCC---CccccccC--HHHHHHHHHHHHHHcccccc
Confidence 45678899999964443 4455555666553 67899999985443 22222111 23446777777776654322
Q ss_pred CCCCcEEEEEcChHH-HHHHHHHh-CCCcceEEEEec--c-ccC-----hhHHhh---hcchh-----------------
Q 004816 568 ADEKRLCITGGSAGG-YTTLAALA-FRDTFKAGASLY--G-VAD-----LSMLRA---ETHKF----------------- 617 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG-~~a~~~~~-~~~~~~a~v~~~--~-~~d-----~~~~~~---~~~~~----------------- 617 (729)
..++.|+|||||| -+++.... .|+.+..++... | .+. ...+.. ..+..
T Consensus 122 --~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~ 199 (315)
T KOG2382|consen 122 --LDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEV 199 (315)
T ss_pred --cCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 3579999999999 44444333 788776666542 2 110 000000 00000
Q ss_pred -----hhhhhh-hhc-C----------Ch----hhhh---hcCccccc--CCCCCCEEEEEeCCCCCCChHHHHHHHHHH
Q 004816 618 -----ESRYID-NLV-G----------SE----KDYY---EKSPINFV--DKFSCPIILFQGLEDKVVPPDQARKIYKAL 671 (729)
Q Consensus 618 -----~~~~~~-~~~-~----------~~----~~~~---~~sp~~~~--~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l 671 (729)
...++. .+. + +. +.+. ..+.-..+ .....|+|+++|.++..+|.++-..+...+
T Consensus 200 ~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~f 279 (315)
T KOG2382|consen 200 GFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKIF 279 (315)
T ss_pred hcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHhc
Confidence 000000 000 0 00 1111 11111112 445689999999999999987766666665
Q ss_pred HhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 672 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 672 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
. .+++++++++||+.. -++.+++.+.+.+|+.++
T Consensus 280 p----~~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 280 P----NVEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred c----chheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 5 479999999999864 367788889999988764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.2e-07 Score=89.82 Aligned_cols=213 Identities=11% Similarity=0.075 Sum_probs=134.6
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 169 (729)
.+.++++.|...+.-+.+ -+++..|+..+.. ....|...-+ .-..-.-..|.+.|...+|.+.+..-+|.
T Consensus 215 ~I~sv~FHp~~plllvaG---~d~~lrifqvDGk---~N~~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAG---LDGTLRIFQVDGK---VNPKLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CceEEEecCCCceEEEec---CCCcEEEEEecCc---cChhheeeee----ccCccceeeecCCCceEEEecccceEEEE
Confidence 456888998666666654 4677788887643 2222321110 00111234566667668888888888999
Q ss_pred EeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeC
Q 004816 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMD 249 (729)
Q Consensus 170 ~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~S 249 (729)
||+.+ .+..+|....+-+...+..+.+|||+++|+..-. .+.|+++...+++...-..-.+.....+||
T Consensus 285 yDle~--ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---------~G~I~lLhakT~eli~s~KieG~v~~~~fs 353 (514)
T KOG2055|consen 285 YDLET--AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---------NGHIHLLHAKTKELITSFKIEGVVSDFTFS 353 (514)
T ss_pred eeccc--cccccccCCCCcccchhheeEecCCCCeEEEccc---------CceEEeehhhhhhhhheeeeccEEeeEEEe
Confidence 99998 7777777654333344567889999998877643 367999998887643333345677889999
Q ss_pred CCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEc
Q 004816 250 PRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 250 PDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~ 329 (729)
.||+.|+.+. ...+||++|+. .... ...+.+.. . .+-...+-|++|+++.+... .|.-+||-.+-
T Consensus 354 Sdsk~l~~~~--------~~GeV~v~nl~-~~~~--~~rf~D~G-~--v~gts~~~S~ng~ylA~GS~-~GiVNIYd~~s 418 (514)
T KOG2055|consen 354 SDSKELLASG--------GTGEVYVWNLR-QNSC--LHRFVDDG-S--VHGTSLCISLNGSYLATGSD-SGIVNIYDGNS 418 (514)
T ss_pred cCCcEEEEEc--------CCceEEEEecC-Ccce--EEEEeecC-c--cceeeeeecCCCceEEeccC-cceEEEeccch
Confidence 9999886554 23479999998 3433 22232221 1 33456788899984444444 68888885432
Q ss_pred --CCCeEEEee
Q 004816 330 --SNNEVLAIY 338 (729)
Q Consensus 330 --~~g~~~~l~ 338 (729)
.+..++.+.
T Consensus 419 ~~~s~~PkPik 429 (514)
T KOG2055|consen 419 CFASTNPKPIK 429 (514)
T ss_pred hhccCCCCchh
Confidence 234444444
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-08 Score=99.17 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHh-hCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la-~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
..|++|++||.........+..+...+. ..+|.|+++|+++... ..+..... .. ....+++...+++|.+...++
T Consensus 35 ~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~--~~y~~a~~-~~-~~v~~~la~~l~~L~~~~g~~ 110 (275)
T cd00707 35 SRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGAN--PNYPQAVN-NT-RVVGAELAKFLDFLVDNTGLS 110 (275)
T ss_pred CCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccc--cChHHHHH-hH-HHHHHHHHHHHHHHHHhcCCC
Confidence 4588999999754432222233444444 4689999999987522 11211111 00 011367788889888875567
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
.+++.++|||+||++|..++. ++++++.++.+.|..
T Consensus 111 ~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 111 LENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred hHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 789999999999999999998 888999999998764
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-06 Score=100.09 Aligned_cols=218 Identities=10% Similarity=0.000 Sum_probs=132.5
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
..+..+.|||||++|+|..+..+.+ ..+|+++|+++|+ ...+... . ...+|++||+.|+|+..++.. ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E----~~~l~v~d~~tg~~l~~~i~~~-~--~~~~w~~D~~~~~y~~~~~~~--~~ 197 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRR----QYGIRFRNLETGNWYPELLDNV-E--PSFVWANDSWTFYYVRKHPVT--LL 197 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcE----EEEEEEEECCCCCCCCccccCc-c--eEEEEeeCCCEEEEEEecCCC--CC
Confidence 4567788999999999998776655 5889999999886 3334322 1 458999999999999874321 13
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC-CCc-EEEEEecCCCceEEEEEE--cCCCeEEEeeccCccc
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSLDAEF 344 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp-DG~-l~~~~~~~~g~~~l~~~d--~~~g~~~~l~~~~~~~ 344 (729)
..+||+.++. ++......++.+.+ ....-..|.+ |++ +++.+.. .....++.++ ..+++.+.+.......
T Consensus 198 ~~~v~~h~lg-t~~~~d~lv~~e~~----~~~~~~~~~s~d~~~l~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (686)
T PRK10115 198 PYQVWRHTIG-TPASQDELVYEEKD----DTFYVSLHKTTSKHYVVIHLAS-ATTSEVLLLDAELADAEPFVFLPRRKDH 271 (686)
T ss_pred CCEEEEEECC-CChhHCeEEEeeCC----CCEEEEEEEcCCCCEEEEEEEC-CccccEEEEECcCCCCCceEEEECCCCC
Confidence 3679999998 66322344555443 1111123444 888 5544444 3334566666 3344444444221111
Q ss_pred cCCcccccCcceeeeeecCCCCEEEEEEEEC-CeEEEEEEECC-CCceEeeccC--CcceEEeeeeCCEEEEEEeCCCCC
Q 004816 345 SRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDF-GHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVEP 420 (729)
Q Consensus 345 ~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~-g~~~ly~~d~~-~g~~~~lt~~--~~~v~~~~~~~~~~~~~~~~~~~~ 420 (729)
.+.+.. .++.+|+.++.+ ....|+.++++ .++++.|-.+ ...+..+...++.+++. ...+..
T Consensus 272 ----------~~~~~~---~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~-~~~~g~ 337 (686)
T PRK10115 272 ----------EYSLDH---YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVE-ERQRGL 337 (686)
T ss_pred ----------EEEEEe---CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEE-EEeCCE
Confidence 011111 446777777654 45678888887 4566666555 34577764445555444 445556
Q ss_pred ceEEEEEcCCCcceeee
Q 004816 421 SSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 421 ~~ly~~d~~~~~~~~lt 437 (729)
..++.+++.+++.+.|+
T Consensus 338 ~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 338 TSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEEEEcCCCCceEEec
Confidence 67899988776666554
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.8e-07 Score=89.17 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCCCCCccccch-----hhhHHHhhC-------CcEEEEecCCCCC-CC-chhHHHhh----ccCCCccc
Q 004816 490 EKPPLLVKSHGGPTSEARGILN-----LSIQYWTSR-------GWAFVDVNYGGST-GY-GREFRERL----LGRWGIVD 551 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~-----~~~~~la~~-------G~~v~~~d~rGs~-g~-g~~~~~~~----~~~~~~~~ 551 (729)
.+-.+||++|+-.+........ .+.+.+..- -|-|+++|.-|+. |. |..-.... ..++....
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 4557999999964433222211 133334333 4899999988865 32 22111111 11234467
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 552 VNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
+.|.+.+-+.|++.-.| +++. ++|.||||+.++..+. +|+++..++.++..
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~ 181 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATA 181 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheeccc
Confidence 89999999888887555 4555 9999999999998886 99999888877653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-06 Score=85.49 Aligned_cols=223 Identities=15% Similarity=0.150 Sum_probs=127.9
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceec-CCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFD-PRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~S-PdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
|....+.++|++-..++|+++++++ +..+.+... . .....+. +||+ +++... ..+.++|+
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~--~~~~~~~~~----~--~~G~~~~~~~g~-l~v~~~----------~~~~~~d~ 67 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDT--GEVEVIDLP----G--PNGMAFDRPDGR-LYVADS----------GGIAVVDP 67 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTT--TEEEEEESS----S--EEEEEEECTTSE-EEEEET----------TCEEEEET
T ss_pred EECCCCEEEEEEcCCCEEEEEECCC--CeEEEEecC----C--CceEEEEccCCE-EEEEEc----------CceEEEec
Confidence 3333568999988889999999987 655544433 1 3455666 6755 443332 23666699
Q ss_pred CCCceEEeeeC------CCeeeeeeeCCCCCeEEEEEecCCCCCC-CCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 229 NGQNIQVLVSG------SDFYAFPRMDPRGERMAWIEWHHPNMPW-DKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 229 ~~g~~~~lt~~------~~~~~~~~~SPDG~~la~~~~~~~~~~~-~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
++++.+.+... ....+..+++|||+ |++.......... ....||.++.+ ++. .....+. ....
T Consensus 68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~~~--~~~~~~~-----~~pN 137 (246)
T PF08450_consen 68 DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--GKV--TVVADGL-----GFPN 137 (246)
T ss_dssp TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SEE--EEEEEEE-----SSEE
T ss_pred CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--CeE--EEEecCc-----cccc
Confidence 99988877542 23456779999999 7777644332111 11679998865 443 2222222 3446
Q ss_pred CceeCCCCcEEEEEecCCCceEEEEEEcC--CCeE---EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 302 EPKWSSKGELFFVTDRKNGFWNLHKWIES--NNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~~l~~~d~~--~g~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
.++|+|||+.+|.++. ...+|++++++ +++. +.+........ ..+.+.+. .++.||++.. +
T Consensus 138 Gi~~s~dg~~lyv~ds--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g------~pDG~~vD----~~G~l~va~~--~ 203 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADS--FNGRIWRFDLDADGGELSNRRVFIDFPGGPG------YPDGLAVD----SDGNLWVADW--G 203 (246)
T ss_dssp EEEEETTSSEEEEEET--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSC------EEEEEEEB----TTS-EEEEEE--T
T ss_pred ceEECCcchheeeccc--ccceeEEEeccccccceeeeeeEEEcCCCCc------CCCcceEc----CCCCEEEEEc--C
Confidence 7899999995455554 34568888875 3312 22222211110 11233443 4455666544 3
Q ss_pred eEEEEEEECCCCceEeeccCCcceEEee---eeCCEEEEEEe
Q 004816 377 RSYLGILDDFGHSLSLLDIPFTDIDNIT---LGNDCLFVEGA 415 (729)
Q Consensus 377 ~~~ly~~d~~~g~~~~lt~~~~~v~~~~---~~~~~~~~~~~ 415 (729)
...|++++.++..+..+..+......+. .+.+.+++.++
T Consensus 204 ~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 204 GGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 4478888999777777877755666662 24455655543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-07 Score=89.89 Aligned_cols=221 Identities=17% Similarity=0.126 Sum_probs=125.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhC----CcEEEEecCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR----GWAFVDVNYGGS 532 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~----G~~v~~~d~rGs 532 (729)
..+.+.+.+. -..+....++.|++.. +..++|++++.||--+.....-. .....+... .-.++.+|+---
T Consensus 68 ~~~~~~~~~~-l~~~~~~vv~lppgy~----~~~k~pvl~~~DG~~~~~~g~i~-~~~dsli~~g~i~pai~vgid~~d~ 141 (299)
T COG2382 68 PVEEILYSSE-LLSERRRVVYLPPGYN----PLEKYPVLYLQDGQDWFRSGRIP-RILDSLIAAGEIPPAILVGIDYIDV 141 (299)
T ss_pred chhhhhhhhh-hccceeEEEEeCCCCC----ccccccEEEEeccHHHHhcCChH-HHHHHHHHcCCCCCceEEecCCCCH
Confidence 3455556555 3344555667777733 47899999999995333322222 233444444 467888887311
Q ss_pred CCCchhHHHhhccCCCcccHHHH-HHHHHHHHhCCC--CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh
Q 004816 533 TGYGREFRERLLGRWGIVDVNDC-CSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~-~~~~~~l~~~~~--~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~ 608 (729)
.. +........ ...+.+ .+.+-++.+... -+.++-+++|.|+||..+++++. +|++|..+++.+|.++..
T Consensus 142 ----~~-R~~~~~~n~-~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 142 ----KK-RREELHCNE-AYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred ----HH-HHHHhcccH-HHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 11 111111110 011222 233445555432 35677899999999999999998 999999999999987754
Q ss_pred HHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 609 MLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
-..... ..+.....+-......-..-++...++.+.+. ....++++.|+..|.++.+..|+| ||
T Consensus 216 ~~~~~~-------------~~~~~~~l~~~~a~~~~~~~~l~~g~~~~~~~--~pNr~L~~~L~~~g~~~~yre~~G-gH 279 (299)
T COG2382 216 PLDTQP-------------QGEVAESLKILHAIGTDERIVLTTGGEEGDFL--RPNRALAAQLEKKGIPYYYREYPG-GH 279 (299)
T ss_pred cccccc-------------ccchhhhhhhhhccCccceEEeecCCcccccc--chhHHHHHHHHhcCCcceeeecCC-CC
Confidence 221100 00011101111111222232333344444444 457889999999999999999999 99
Q ss_pred ccCCcccHHHHHHHHHHHHHHHh
Q 004816 689 GFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 689 ~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
.+. .+-..+.++|...+
T Consensus 280 dw~------~Wr~~l~~~L~~l~ 296 (299)
T COG2382 280 DWA------WWRPALAEGLQLLL 296 (299)
T ss_pred chh------HhHHHHHHHHHHhh
Confidence 642 33334455555544
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.3e-07 Score=90.56 Aligned_cols=200 Identities=15% Similarity=0.113 Sum_probs=116.5
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh-HHHhhc------
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE-FRERLL------ 544 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~-~~~~~~------ 544 (729)
.+..++.|..-+ .+..|++|.+.|.+..........++.-|++.|++.+.+..+= ||.. ......
T Consensus 77 a~~~~~~P~~~~-----~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Py---yg~RkP~~Q~~s~l~~V 148 (348)
T PF09752_consen 77 ARFQLLLPKRWD-----SPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPY---YGQRKPKDQRRSSLRNV 148 (348)
T ss_pred eEEEEEECCccc-----cCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEeccc---ccccChhHhhcccccch
Confidence 344455576521 3457999999986443322233345777788899988887432 2211 111000
Q ss_pred ---cCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc--------------C
Q 004816 545 ---GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA--------------D 606 (729)
Q Consensus 545 ---~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~--------------d 606 (729)
-..|...+.|....+.|+.++++ .+++|.|.||||++|..+++ .|..+..+-+.++.+ +
T Consensus 149 sDl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~ 225 (348)
T PF09752_consen 149 SDLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSIN 225 (348)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCC
Confidence 11234457888899999999965 59999999999999998888 777665554444322 2
Q ss_pred hhHHhhhcchhhhhhhhhhc------------------CChh----hhhhcCcccccCCCCC-----CEEEEEeCCCCCC
Q 004816 607 LSMLRAETHKFESRYIDNLV------------------GSEK----DYYEKSPINFVDKFSC-----PIILFQGLEDKVV 659 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~------------------~~~~----~~~~~sp~~~~~~i~~-----PvL~i~G~~D~~v 659 (729)
|..+..... ...|.+... .+.+ .....+-..++.+..+ .+.++.+++|..|
T Consensus 226 W~~L~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYV 303 (348)
T PF09752_consen 226 WDALEKQFE--DTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYV 303 (348)
T ss_pred HHHHHHHhc--ccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEe
Confidence 222221100 000000000 0011 0111122334444433 3788899999999
Q ss_pred ChHHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 660 PPDQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 660 p~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
|..+...+.+.+. .+++.++++ ||.
T Consensus 304 Pr~~v~~Lq~~WP----GsEvR~l~g-GHV 328 (348)
T PF09752_consen 304 PRHGVLSLQEIWP----GSEVRYLPG-GHV 328 (348)
T ss_pred chhhcchHHHhCC----CCeEEEecC-CcE
Confidence 9988887777765 457888877 996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.2e-06 Score=84.38 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=118.0
Q ss_pred CCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC------------
Q 004816 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG------------ 230 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~------------ 230 (729)
..|.+.+||... +...|-.+-..-..++.|..|++||++|+.+-+.... ..++|.+|..+
T Consensus 79 ~sG~vRIWdtt~---~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-----fg~~F~~DSG~SvGei~GhSr~i 150 (603)
T KOG0318|consen 79 VSGKVRIWDTTQ---KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-----FGHVFLWDSGNSVGEITGHSRRI 150 (603)
T ss_pred CcCcEEEEeccC---cceeeeeeeeecccccccceeCCCCcEEEEEecCccc-----eeEEEEecCCCccceeeccceeE
Confidence 456788888653 2222222210012457899999999999998664421 24455555432
Q ss_pred -------CceEEeee-C----------------------CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCC
Q 004816 231 -------QNIQVLVS-G----------------------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN 280 (729)
Q Consensus 231 -------g~~~~lt~-~----------------------~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~ 280 (729)
..+-++.. + ..|....++||||++.+-++.| ..++++|=. +
T Consensus 151 ns~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD--------gki~iyDGk-t 221 (603)
T KOG0318|consen 151 NSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD--------GKIYIYDGK-T 221 (603)
T ss_pred eeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC--------ccEEEEcCC-C
Confidence 12222221 1 1245567899999988876632 459999866 5
Q ss_pred CCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceee
Q 004816 281 GDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEI 358 (729)
Q Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~ 358 (729)
|+. +-.+.+.+ ...+++..+.||||++ ++-.+.+ ....|| |..+++.. .+.-.. .+.+.. . ...|
T Consensus 222 ge~--vg~l~~~~-aHkGsIfalsWsPDs~~~~T~SaD--kt~KIW--dVs~~slv~t~~~~~-~v~dqq--v---G~lW 288 (603)
T KOG0318|consen 222 GEK--VGELEDSD-AHKGSIFALSWSPDSTQFLTVSAD--KTIKIW--DVSTNSLVSTWPMGS-TVEDQQ--V---GCLW 288 (603)
T ss_pred ccE--EEEecCCC-CccccEEEEEECCCCceEEEecCC--ceEEEE--EeeccceEEEeecCC-chhceE--E---EEEE
Confidence 654 33344222 1117788899999998 6555433 344555 55555433 232111 111100 0 0111
Q ss_pred eeecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 359 IQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 359 l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.++.|+. -.-+|...++ +++... ++.+....-.|..+ ..+++..+|.++-. +.+...+..+|.
T Consensus 289 -----qkd~lIt-VSl~G~in~l--n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD---G~I~~W~~~~g~ 353 (603)
T KOG0318|consen 289 -----QKDHLIT-VSLSGTINYL--NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD---GHINSWDSGSGT 353 (603)
T ss_pred -----eCCeEEE-EEcCcEEEEe--cccCCChhheecccccceeEEEEcCCCCEEEeeccC---ceEEEEecCCcc
Confidence 1222332 2234554444 333333 33444455677777 44455555555433 245555555554
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.2e-06 Score=82.89 Aligned_cols=226 Identities=11% Similarity=0.137 Sum_probs=129.8
Q ss_pred EEEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI- 233 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~- 233 (729)
.+++....++.+++|++.+ +. ...+... ........|+|+++.++....+ ..|+++++.+++.
T Consensus 22 ~~l~~~~~~g~i~i~~~~~--~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~---------~~i~i~~~~~~~~~ 86 (289)
T cd00200 22 KLLATGSGDGTIKVWDLET--GELLRTLKGH----TGPVRDVAASADGTYLASGSSD---------KTIRLWDLETGECV 86 (289)
T ss_pred CEEEEeecCcEEEEEEeeC--CCcEEEEecC----CcceeEEEECCCCCEEEEEcCC---------CeEEEEEcCcccce
Confidence 3344444578899999886 43 2333333 2334678899999887766542 4688999987543
Q ss_pred EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
..+...........|+|+++.|+... ....|.++|+. +++. ...+.... ..+..+.|+|++++++
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~i~~~~~~-~~~~--~~~~~~~~----~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSS--------RDKTIKVWDVE-TGKC--LTTLRGHT----DWVNSVAFSPDGTFVA 151 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEec--------CCCeEEEEECC-CcEE--EEEeccCC----CcEEEEEEcCcCCEEE
Confidence 34443344567789999977554333 13458999987 4543 33333333 4567789999987555
Q ss_pred EEecCCCceEEEEEEcCCCeEEEeec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS- 391 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~- 391 (729)
.... .+ .|.++|..+++...... ....+....|.+ +++.+++... ++. |..++...++..
T Consensus 152 ~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~------------~~~~l~~~~~-~~~--i~i~d~~~~~~~~ 213 (289)
T cd00200 152 SSSQ-DG--TIKLWDLRTGKCVATLTGHTGEVNSVAFSP------------DGEKLLSSSS-DGT--IKLWDLSTGKCLG 213 (289)
T ss_pred EEcC-CC--cEEEEEccccccceeEecCccccceEEECC------------CcCEEEEecC-CCc--EEEEECCCCceec
Confidence 5543 23 46677777655443332 222222333332 5556665554 554 455566655443
Q ss_pred eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 392 LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 392 ~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.+......+..+ ..+++.+++..+ ....++.++...++
T Consensus 214 ~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~i~~~~~~~ 252 (289)
T cd00200 214 TLRGHENGVNSVAFSPDGYLLASGS---EDGTIRVWDLRTGE 252 (289)
T ss_pred chhhcCCceEEEEEcCCCcEEEEEc---CCCcEEEEEcCCce
Confidence 332334456656 333455554443 22467777776554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.1e-07 Score=84.80 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=77.2
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAF 245 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~ 245 (729)
.||.++..+ .....+.-.. ...+.+++|||+|++++.+....+ ..+-++|+++..+..+. ....+.
T Consensus 40 ~l~~~~~~~--~~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~-------~~v~lyd~~~~~i~~~~--~~~~n~ 105 (194)
T PF08662_consen 40 ELFYLNEKN--IPVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMP-------AKVTLYDVKGKKIFSFG--TQPRNT 105 (194)
T ss_pred EEEEEecCC--CccceeeccC---CCceEEEEECcCCCEEEEEEccCC-------cccEEEcCcccEeEeec--CCCceE
Confidence 688887765 5455554321 123789999999999877754322 34666677644344442 334466
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
..|||+|++|+..+... ...+|.++|+. +.+. +... .. .....+.|||||+ ++...
T Consensus 106 i~wsP~G~~l~~~g~~n-----~~G~l~~wd~~-~~~~--i~~~--~~----~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 106 ISWSPDGRFLVLAGFGN-----LNGDLEFWDVR-KKKK--ISTF--EH----SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEECCCCCEEEEEEccC-----CCcEEEEEECC-CCEE--eecc--cc----CcEEEEEEcCCCCEEEEEE
Confidence 89999999999877432 23568889987 3332 2222 21 3446789999999 55433
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-06 Score=87.26 Aligned_cols=242 Identities=9% Similarity=0.029 Sum_probs=147.6
Q ss_pred CCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 146 ~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
++.+..+.+. .++.+.+.++.|-++.+++ +.-..|+.-. ..........|+|+|+..+|++... .-+|
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDG--k~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr--------ky~y 283 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDG--KVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR--------KYLY 283 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecC--ccChhheeee-eccCccceeeecCCCceEEEecccc--------eEEE
Confidence 4555666655 7888888888776777765 4444555431 0012235567999999777776654 5699
Q ss_pred EEEcCCCceEEeeeC--C--CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccc
Q 004816 225 AIALNGQNIQVLVSG--S--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 300 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~--~--~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 300 (729)
.+|+.+.++..|-.. . .....+..||||+.|++.. ....|+++... ++++ +..+.- + +.+
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G--------~~G~I~lLhak-T~el--i~s~Ki-e----G~v 347 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG--------NNGHIHLLHAK-TKEL--ITSFKI-E----GVV 347 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEcc--------cCceEEeehhh-hhhh--hheeee-c----cEE
Confidence 999999888777542 1 2455678899999998776 34569998877 6654 222221 2 556
Q ss_pred cCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 301 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 301 ~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
..+.|+.||+.++.+.. ..++|++|+...........++.+..-... ... ++. ++.+....|...|
T Consensus 348 ~~~~fsSdsk~l~~~~~---~GeV~v~nl~~~~~~~rf~D~G~v~gts~~-------~S~---ng~-ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGG---TGEVYVWNLRQNSCLHRFVDDGSVHGTSLC-------ISL---NGS-YLATGSDSGIVNI 413 (514)
T ss_pred eeEEEecCCcEEEEEcC---CceEEEEecCCcceEEEEeecCccceeeee-------ecC---CCc-eEEeccCcceEEE
Confidence 78999999994444432 348999999877554444333333222221 111 333 5555667888899
Q ss_pred EEEEC--CCCceEeeccC---CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 381 GILDD--FGHSLSLLDIP---FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 381 y~~d~--~~g~~~~lt~~---~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
|-.+. .++..+++..- -..|.++ ...+.++++++++.. +..+-++.+.
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~-knalrLVHvP 467 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK-KNALRLVHVP 467 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc-ccceEEEecc
Confidence 86542 33444555432 2346666 566677777776543 3334444433
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.7e-06 Score=77.27 Aligned_cols=202 Identities=9% Similarity=-0.001 Sum_probs=123.1
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC-CEEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~ 166 (729)
+.+..+.+.. |++.|- .+++|...||-+..- ..+.++... .......+.+ +.-+++.+.+++
T Consensus 84 kNVtaVgF~~dgrWMyT----gseDgt~kIWdlR~~---~~qR~~~~~---------spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYT----GSEDGTVKIWDLRSL---SCQRNYQHN---------SPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred CceEEEEEeecCeEEEe----cCCCceEEEEeccCc---ccchhccCC---------CCcceEEecCCcceEEeecCCCc
Confidence 4455555655 555543 236788888876543 122222111 0122333432 345677778899
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEe---ee---C
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVL---VS---G 239 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~l---t~---~ 239 (729)
|++||+... .-..+|.+++ ...+......|||+.++.+-.. ++.|++++-++.. ..| +. .
T Consensus 148 irvWDl~~~-~c~~~liPe~---~~~i~sl~v~~dgsml~a~nnk---------G~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 148 IRVWDLGEN-SCTHELIPED---DTSIQSLTVMPDGSMLAAANNK---------GNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred EEEEEccCC-ccccccCCCC---CcceeeEEEcCCCcEEEEecCC---------ccEEEEEccCCCccccceEhhheecc
Confidence 999999762 2455666553 3556888999999998877442 5688888776432 222 22 2
Q ss_pred CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCC
Q 004816 240 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 319 (729)
Q Consensus 240 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~ 319 (729)
.+......+|||+|+||-.+.+ ..+++++.+ +- +.-...+.+.. ..+-.-.||.||+.+++... +
T Consensus 215 ~~~il~C~lSPd~k~lat~ssd--------ktv~iwn~~-~~-~kle~~l~gh~----rWvWdc~FS~dg~YlvTass-d 279 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSD--------KTVKIWNTD-DF-FKLELVLTGHQ----RWVWDCAFSADGEYLVTASS-D 279 (311)
T ss_pred cceEEEEEECCCCcEEEeecCC--------ceEEEEecC-Cc-eeeEEEeecCC----ceEEeeeeccCccEEEecCC-C
Confidence 3445567899999999987733 347788776 33 32233455554 45567789999996666655 4
Q ss_pred CceEEEEEEcCCCeEEE
Q 004816 320 GFWNLHKWIESNNEVLA 336 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~ 336 (729)
+..+|| ++..++...
T Consensus 280 ~~~rlW--~~~~~k~v~ 294 (311)
T KOG0315|consen 280 HTARLW--DLSAGKEVR 294 (311)
T ss_pred Cceeec--ccccCceee
Confidence 556665 555555443
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.3e-08 Score=100.68 Aligned_cols=128 Identities=24% Similarity=0.269 Sum_probs=87.5
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCC---ccccchhhhHHHhhCC-cEEEEecCCCCCCCchhHHHhhc-
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRG-WAFVDVNYGGSTGYGREFRERLL- 544 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~---~~~~~~~~~~~la~~G-~~v~~~d~rGs~g~g~~~~~~~~- 544 (729)
..+..-+|.|.. +.++.||+|++|||.... ....| .-+.|+.+| ++|+.+|||-. -+|--......
T Consensus 78 DCL~LNIwaP~~------~a~~~PVmV~IHGG~y~~Gs~s~~~y--dgs~La~~g~vVvVSvNYRLG-~lGfL~~~~~~~ 148 (491)
T COG2272 78 DCLYLNIWAPEV------PAEKLPVMVYIHGGGYIMGSGSEPLY--DGSALAARGDVVVVSVNYRLG-ALGFLDLSSLDT 148 (491)
T ss_pred cceeEEeeccCC------CCCCCcEEEEEeccccccCCCccccc--ChHHHHhcCCEEEEEeCcccc-cceeeehhhccc
Confidence 346666788872 256789999999985322 12223 346788888 99999999952 12321111111
Q ss_pred --cCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhCC---CcceEEEEeccccC
Q 004816 545 --GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAFR---DTFKAGASLYGVAD 606 (729)
Q Consensus 545 --~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~~---~~~~a~v~~~~~~d 606 (729)
..-...-+.|+..+++|+.++ ..-|++.|.|+|.|+|++.++.++..| ..|..+|+.+|...
T Consensus 149 ~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 149 EDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 111112389999999999886 456999999999999999999888743 47888887777553
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=91.92 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCCCCccccchh----hhHHHhhCCcEEEEecCCCCC--CCchh----------HHHhhccCCCcc----
Q 004816 491 KPPLLVKSHGGPTSEARGILNL----SIQYWTSRGWAFVDVNYGGST--GYGRE----------FRERLLGRWGIV---- 550 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~----~~~~la~~G~~v~~~d~rGs~--g~g~~----------~~~~~~~~~~~~---- 550 (729)
+.+-||++||.. ++...|.. +...|.+.++.++.+|-+-.. +.+-. ........|...
T Consensus 3 ~k~riLcLHG~~--~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYG--QNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCC--cCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 357899999983 33343432 334444447888888844211 11110 111122223221
Q ss_pred -cHHHHHHHHHHHHh----CCCCCCCcEEEEEcChHHHHHHHHHh-----C----CCcceEEEEeccccChhHHhhhcch
Q 004816 551 -DVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALA-----F----RDTFKAGASLYGVADLSMLRAETHK 616 (729)
Q Consensus 551 -~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~~a~~~~~-----~----~~~~~a~v~~~~~~d~~~~~~~~~~ 616 (729)
...++..++++|.+ .+.. .+|+|+|.||.+|..++. . ...||.+|+.+++.-....
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 24555555555544 3433 589999999999987774 1 2358999999886532111
Q ss_pred hhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC
Q 004816 617 FESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692 (729)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 692 (729)
........+|++|+|-++|.+|.+++++.+..+++..... .+++..++ ||.+..
T Consensus 151 ------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~g-GH~vP~ 204 (212)
T PF03959_consen 151 ------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDG-GHHVPR 204 (212)
T ss_dssp ------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESS-SSS---
T ss_pred ------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECC-CCcCcC
Confidence 0001123467899999999999999999999999999863 57777765 787754
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=87.58 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=61.1
Q ss_pred CEEEEEcCCCCCCccccch-hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~-~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
|.|+++||.+.....+... ......... |.|+.+|.||.+... .. ........+++...++.+ ...
T Consensus 22 ~~i~~~hg~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g~g~s~----~~--~~~~~~~~~~~~~~~~~~------~~~ 88 (282)
T COG0596 22 PPLVLLHGFPGSSSVWRPVFKVLPALAAR-YRVIAPDLRGHGRSD----PA--GYSLSAYADDLAALLDAL------GLE 88 (282)
T ss_pred CeEEEeCCCCCchhhhHHHHHHhhccccc-eEEEEecccCCCCCC----cc--cccHHHHHHHHHHHHHHh------CCC
Confidence 4899999986554433331 111111223 999999999665443 00 000000023333333322 223
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
++.++|||+||.+++.++. +|++++++|+..+.
T Consensus 89 ~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~ 122 (282)
T COG0596 89 KVVLVGHSMGGAVALALALRHPDRVRGLVLIGPA 122 (282)
T ss_pred ceEEEEecccHHHHHHHHHhcchhhheeeEecCC
Confidence 4999999999999999998 99999999988864
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=91.91 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=56.5
Q ss_pred cCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCC-CEEEEEECCCCcc--cCCcccHHHHHHHHHHHHHHH
Q 004816 641 VDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL-PVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 641 ~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+++|+ +|+|.+.|++|.++|+.++..+.+.....+. +.+.++.+++||. |.......+.+..+.+|+.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 56788 9999999999999999999999988644332 4467788889996 556666778888999998763
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3e-06 Score=84.88 Aligned_cols=201 Identities=11% Similarity=0.024 Sum_probs=119.0
Q ss_pred ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC--ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCC
Q 004816 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ--NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 267 (729)
Q Consensus 190 ~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g--~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~ 267 (729)
...+.-..||++|++|+-.+.+. ..-||.+..++. -.+.|...........||||.++|+-...++
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~-------Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e----- 291 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDS-------TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE----- 291 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCc-------eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH-----
Confidence 45567788999999988766544 245777766643 1234445556677789999999998776433
Q ss_pred CCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccC
Q 004816 268 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 346 (729)
Q Consensus 268 ~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~ 346 (729)
.+++.|++ +|.. +...+..- + .++...+|-|||. ++.-+.+ ..++.+|.++.....-. .+..
T Consensus 292 ---~~~lwDv~-tgd~--~~~y~~~~-~--~S~~sc~W~pDg~~~V~Gs~d----r~i~~wdlDgn~~~~W~----gvr~ 354 (519)
T KOG0293|consen 292 ---VLSLWDVD-TGDL--RHLYPSGL-G--FSVSSCAWCPDGFRFVTGSPD----RTIIMWDLDGNILGNWE----GVRD 354 (519)
T ss_pred ---heeeccCC-cchh--hhhcccCc-C--CCcceeEEccCCceeEecCCC----CcEEEecCCcchhhccc----cccc
Confidence 28888888 6765 33333321 1 5677889999998 5544333 56778888765422111 0001
Q ss_pred CcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEE
Q 004816 347 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 347 ~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
+-..++...+ ||+.++... .+ .++..++..+..-+-+-.....+.++ .+.++++++..-. +.++.+
T Consensus 355 ----~~v~dlait~---Dgk~vl~v~-~d--~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~---~qei~L 421 (519)
T KOG0293|consen 355 ----PKVHDLAITY---DGKYVLLVT-VD--KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ---DQEIHL 421 (519)
T ss_pred ----ceeEEEEEcC---CCcEEEEEe-cc--cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc---cCeeEE
Confidence 1122344443 666665544 23 34555566555544344445567766 3444555444432 346788
Q ss_pred EEcCCCc
Q 004816 426 VTLDDHK 432 (729)
Q Consensus 426 ~d~~~~~ 432 (729)
.|++...
T Consensus 422 WDl~e~~ 428 (519)
T KOG0293|consen 422 WDLEENK 428 (519)
T ss_pred eecchhh
Confidence 8887543
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.2e-08 Score=111.02 Aligned_cols=127 Identities=21% Similarity=0.214 Sum_probs=80.7
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc--cchhhhHHHhhCCcEEEEecCCCCCCCchhHH--Hhh-c
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR--ERL-L 544 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~--~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~--~~~-~ 544 (729)
..|..-+|.|.... ...+.||+|++|||....... ........++.++++||.+|||-+. +|--.. ... .
T Consensus 107 DCL~LnI~~P~~~~----~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~-~Gfl~~~~~~~~~ 181 (535)
T PF00135_consen 107 DCLYLNIYTPSNAS----SNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGA-FGFLSLGDLDAPS 181 (535)
T ss_dssp ---EEEEEEETSSS----STTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HH-HHH-BSSSTTSHB
T ss_pred hHHHHhhhhccccc----cccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccc-cccccccccccCc
Confidence 46777888897733 233789999999986443333 2223345567889999999999421 111000 000 2
Q ss_pred cCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccc
Q 004816 545 GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGV 604 (729)
Q Consensus 545 ~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~ 604 (729)
+++ -+.|...|++|+.++ -.-|+++|.|+|+|.||..+..++. ...+|+.+|+.+|.
T Consensus 182 gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 182 GNY---GLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp STH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhh---hhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 333 389999999999886 3469999999999999999977765 35689999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-06 Score=80.83 Aligned_cols=161 Identities=12% Similarity=0.138 Sum_probs=94.8
Q ss_pred ecceecCCCCEEEEEEecc---CCCCCCcceEEEEEEcCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 194 ADGIFDPRFNRYVTVREDR---RQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~---~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
....|+|+|+.|++..... ..........||.++..+.....+.- ..+.....+|||+|+++|.+....+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~------ 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMP------ 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCC------
Confidence 5677999999998876632 11111234679999888776666532 3335788999999999998863221
Q ss_pred cEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcc
Q 004816 270 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 349 (729)
Q Consensus 270 ~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 349 (729)
..+.++|++ ++. +..+.. .....+.|||+|++++++....-...|..+|.++.+..... +........|
T Consensus 83 ~~v~lyd~~--~~~--i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~W 151 (194)
T PF08662_consen 83 AKVTLYDVK--GKK--IFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHSDATDVEW 151 (194)
T ss_pred cccEEEcCc--ccE--eEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccCcEEEEEE
Confidence 247777775 222 222322 23356899999994444433122345777787754433222 2223344566
Q ss_pred cccCcceeeeeecCCCCEEEEEEEE-----CCeEEEEEE
Q 004816 350 VFGINSYEIIQSHGEKNLIACSYRQ-----NGRSYLGIL 383 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s~~-----~g~~~ly~~ 383 (729)
+| +|+.++..... +....||.+
T Consensus 152 sP------------dGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 152 SP------------DGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred cC------------CCCEEEEEEeccceeccccEEEEEe
Confidence 65 77777655442 334455544
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-06 Score=97.74 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH-Hh-------h--c---------cCCCcc
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR-ER-------L--L---------GRWGIV 550 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~-~~-------~--~---------~~~~~~ 550 (729)
...|+||++||... ....|...++.|+++||.|+++|+||.|.....-. .. . + ++.-..
T Consensus 447 ~g~P~VVllHG~~g--~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ 524 (792)
T TIGR03502 447 DGWPVVIYQHGITG--AKENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQ 524 (792)
T ss_pred CCCcEEEEeCCCCC--CHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHH
Confidence 34689999999733 33456778889999999999999998765422100 00 0 0 001122
Q ss_pred cHHHHHHHHHHHH------hC----CCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 551 DVNDCCSCATFLV------GS----GKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 551 ~~~D~~~~~~~l~------~~----~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
.+.|+......+. +. ...+..++.++||||||.++..++.
T Consensus 525 ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~ 574 (792)
T TIGR03502 525 SILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIA 574 (792)
T ss_pred HHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHH
Confidence 3677777777665 11 1256789999999999999998887
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.5e-06 Score=82.50 Aligned_cols=226 Identities=12% Similarity=0.011 Sum_probs=137.3
Q ss_pred CCceEEEEC-CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 146 GGGAFRIFG-DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 146 ~~~~~~~~~-~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+...|.|.. +.-+.+...++.+-+|++++. .....|+.. ..|+...+|.|+|++|.-.+-+.. --
T Consensus 221 ~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-~~l~~l~gH----~~RVs~VafHPsG~~L~TasfD~t---------WR 286 (459)
T KOG0272|consen 221 GAAVFHPVDSDLNLATASADGTVKLWKLSQE-TPLQDLEGH----LARVSRVAFHPSGKFLGTASFDST---------WR 286 (459)
T ss_pred eeEEEccCCCccceeeeccCCceeeeccCCC-cchhhhhcc----hhhheeeeecCCCceeeecccccc---------hh
Confidence 344566552 333445556777777777651 234556655 578999999999999988776542 33
Q ss_pred EEEcCCCceEEeeeC-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 225 AIALNGQNIQVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
++|+.+++.-.+-.| .....+.+|.|||..++--+.|.- =.++|+. +|.. +..+.++- ..+..+
T Consensus 287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~--------~RvWDlR-tgr~--im~L~gH~----k~I~~V 351 (459)
T KOG0272|consen 287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL--------GRVWDLR-TGRC--IMFLAGHI----KEILSV 351 (459)
T ss_pred hcccccchhhHhhcccccccceeEecCCCceeeccCccch--------hheeecc-cCcE--EEEecccc----cceeeE
Confidence 458888765444443 345677899999996654333221 2355777 6754 66677765 566789
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
.|||+|..+.+... .+..+|| |+......-+. |.-+.....+.|.| ..+.++++..-|+..+||.-
T Consensus 352 ~fsPNGy~lATgs~-Dnt~kVW--DLR~r~~ly~i--------pAH~nlVS~Vk~~p---~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 352 AFSPNGYHLATGSS-DNTCKVW--DLRMRSELYTI--------PAHSNLVSQVKYSP---QEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred eECCCceEEeecCC-CCcEEEe--eecccccceec--------ccccchhhheEecc---cCCeEEEEcccCcceeeecC
Confidence 99999973333333 3555665 44333222111 22222233444443 56788888888999999853
Q ss_pred ECCCCceEeeccCCcceEEe-eeeCCEEEEEEe
Q 004816 384 DDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGA 415 (729)
Q Consensus 384 d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~ 415 (729)
.....++.|......|.++ ...++..++.++
T Consensus 418 -~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 418 -RTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred -CCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 2334466777777778777 334444444443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-05 Score=86.94 Aligned_cols=205 Identities=9% Similarity=0.011 Sum_probs=118.2
Q ss_pred ceEEEE--CCEEEEEECCCCcEEEEeCCCCCCC-Ce-------ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCC
Q 004816 148 GAFRIF--GDTVIFSNYKDQRLYKHSIDSKDSS-PL-------PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDAL 217 (729)
Q Consensus 148 ~~~~~~--~~~i~~~~~~~~~l~~~d~~~~~~~-~~-------~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~ 217 (729)
..+.++ .+.++++...++.|.+|++.++ +. .. .+... ...+...+|+|++..++++...+
T Consensus 78 ~~lafsP~~~~lLASgS~DgtIrIWDi~t~-~~~~~~i~~p~~~L~gH----~~~V~sVaf~P~g~~iLaSgS~D----- 147 (568)
T PTZ00420 78 LDLQFNPCFSEILASGSEDLTIRVWEIPHN-DESVKEIKDPQCILKGH----KKKISIIDWNPMNYYIMCSSGFD----- 147 (568)
T ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCC-CccccccccceEEeecC----CCcEEEEEECCCCCeEEEEEeCC-----
Confidence 334444 3467777778889999998751 21 11 12222 34578889999999876654432
Q ss_pred CcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcc
Q 004816 218 NSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 297 (729)
Q Consensus 218 ~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~ 297 (729)
..|.++|+.+++...............|+|||+.|+... ....|.++|+. +++. +..+.++.
T Consensus 148 ---gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s--------~D~~IrIwD~R-sg~~--i~tl~gH~---- 209 (568)
T PTZ00420 148 ---SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC--------VGKHMHIIDPR-KQEI--ASSFHIHD---- 209 (568)
T ss_pred ---CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe--------cCCEEEEEECC-CCcE--EEEEeccc----
Confidence 468889998876543223344567889999999887554 12459999998 6654 33344443
Q ss_pred ccc-cCc----eeCCCCc-EEEEEecCCCceEEEEEEcCC-CeEEEeeccCcccc--CCcccccCcceeeeeecCCCCEE
Q 004816 298 ESP-TEP----KWSSKGE-LFFVTDRKNGFWNLHKWIESN-NEVLAIYSLDAEFS--RPLWVFGINSYEIIQSHGEKNLI 368 (729)
Q Consensus 298 ~~~-~~~----~wspDG~-l~~~~~~~~g~~~l~~~d~~~-g~~~~l~~~~~~~~--~~~w~~~~~~~~~l~~~~~~~~l 368 (729)
... ... .|++|++ |+-..........|.++|+.. ++.......+...+ .|.|.+ +.+.+
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~------------~tg~l 277 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE------------STGLI 277 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC------------CCCCE
Confidence 111 122 2458887 444443312334688888774 33332222221111 123332 45666
Q ss_pred EEEEEECCeEEEEEEECCCCceEeec
Q 004816 369 ACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 369 ~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
|++...++..++|-+ ..+....|.
T Consensus 278 ~lsGkGD~tIr~~e~--~~~~~~~l~ 301 (568)
T PTZ00420 278 YLIGKGDGNCRYYQH--SLGSIRKVN 301 (568)
T ss_pred EEEEECCCeEEEEEc--cCCcEEeec
Confidence 766666676666654 445555554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-05 Score=80.40 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=127.6
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.|....+.++|++-..++|+.++..+ ++.+..... ...........+|. | ++++ ..+++++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~--g~~~~~~~p----~~~~~~~~~d~~g~-L-v~~~----------~g~~~~~~ 92 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPET--GKKRVFPSP----GGFSSGALIDAGGR-L-IACE----------HGVRLLDP 92 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCc--CceEEEECC----CCcccceeecCCCe-E-EEEc----------cccEEEec
Confidence 45555567899988888999999986 655554443 12223334555554 3 3333 34777787
Q ss_pred CCCce-EEeeeCC-----CeeeeeeeCCCCCeEEEEEec-----CCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcc
Q 004816 229 NGQNI-QVLVSGS-----DFYAFPRMDPRGERMAWIEWH-----HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 297 (729)
Q Consensus 229 ~~g~~-~~lt~~~-----~~~~~~~~SPDG~~la~~~~~-----~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~ 297 (729)
+.+.. +.++... ...+.....|||+ ++|.... .... -....||.+|.. |.. +++..+.-
T Consensus 93 ~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~-~~~G~lyr~~p~--g~~--~~l~~~~~---- 162 (307)
T COG3386 93 DTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEE-RPTGSLYRVDPD--GGV--VRLLDDDL---- 162 (307)
T ss_pred cCCceeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCcccc-CCcceEEEEcCC--CCE--EEeecCcE----
Confidence 76666 4444321 2334567899998 6666644 2211 123368888864 333 34444421
Q ss_pred ccccCceeCCCCcEEEEEecCCCceEEEEEEcCC--Ce---EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEE
Q 004816 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN--NE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 372 (729)
Q Consensus 298 ~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~--g~---~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s 372 (729)
.....++|||||+.+|.++. ....|++++.+. +. .+.......+.+.|... .. |.+..+|.+
T Consensus 163 ~~~NGla~SpDg~tly~aDT--~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~------~v-----DadG~lw~~ 229 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADT--PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM------AV-----DADGNLWVA 229 (307)
T ss_pred EecCceEECCCCCEEEEEeC--CCCeEEEEecCcccCccCCcceEEEccCCCCCCCce------EE-----eCCCCEEEe
Confidence 34468999999995555554 345677776642 21 11111111122333322 22 333344434
Q ss_pred EECCeEEEEEEECCCCceEeeccCCcceEEe---eeeCCEEEEEEeCCCC
Q 004816 373 RQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGASGVE 419 (729)
Q Consensus 373 ~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~---~~~~~~~~~~~~~~~~ 419 (729)
...+...|-++++++..+..+..+...+... -.+.+.+++.++..+.
T Consensus 230 a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 230 AVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred cccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCC
Confidence 4444457888899977777777775444444 2334666666655543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.5e-05 Score=81.21 Aligned_cols=119 Identities=15% Similarity=0.190 Sum_probs=76.2
Q ss_pred eeeecceecC-CCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--------eEEeeeCCCeeeeeeeCCCCCeEEEEEec
Q 004816 191 VSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQN--------IQVLVSGSDFYAFPRMDPRGERMAWIEWH 261 (729)
Q Consensus 191 ~~~~~~~~SP-dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--------~~~lt~~~~~~~~~~~SPDG~~la~~~~~ 261 (729)
..+.++.|+| |++.|+....+ ..|.++++.++. ...|...........|+|++..++.....
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~D---------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASED---------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCC---------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 4578899999 88876655543 357778876542 22333334456678999987544434322
Q ss_pred CCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE
Q 004816 262 HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 262 ~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
...|.++|+. +++. ...+.+.. ..+..+.|+|||+++++... .+ .|.++|+.+++..
T Consensus 147 -------DgtVrIWDl~-tg~~--~~~l~~h~----~~V~sla~spdG~lLatgs~-Dg--~IrIwD~rsg~~v 203 (493)
T PTZ00421 147 -------DMVVNVWDVE-RGKA--VEVIKCHS----DQITSLEWNLDGSLLCTTSK-DK--KLNIIDPRDGTIV 203 (493)
T ss_pred -------CCEEEEEECC-CCeE--EEEEcCCC----CceEEEEEECCCCEEEEecC-CC--EEEEEECCCCcEE
Confidence 2458899998 6654 44455554 55678899999995555544 34 4666788777643
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.8e-06 Score=78.24 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=73.8
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCC--
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCP-- 647 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-- 647 (729)
++++|+|.|+|||.|.+++. +. + .+|+++|...........-.....|. .+ .++...+. + ++.|
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~~~ig~~~~y~-~~--~~~h~~eL------~-~~~p~r 126 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENMEGKIDRPEEYA-DI--ATKCVTNF------R-EKNRDR 126 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHHHHhCCCcchh-hh--hHHHHHHh------h-hcCccc
Confidence 46999999999999999998 54 2 36777887765432111000000011 00 11111111 1 2333
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.+++..+.|.+.++.++.+.++.. .+..+.+|++|.|.. .++.+..|++|+.
T Consensus 127 ~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~~---fe~~l~~I~~F~~ 178 (180)
T PRK04940 127 CLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFKN---ISPHLQRIKAFKT 178 (180)
T ss_pred EEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCCC---HHHHHHHHHHHHh
Confidence 689999999999998777666432 147889999999864 5678888999984
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.51 E-value=6e-07 Score=95.41 Aligned_cols=111 Identities=8% Similarity=-0.016 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCCCCccccchh-hhHHHhh--CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNL-SIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~-~~~~la~--~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
..|++|++||.........|.. +...|.. ..|+|+++|++|.+... +..+. ..-....+++...+++|.+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~--y~~a~--~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQH--YPTSA--AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCC--Ccccc--ccHHHHHHHHHHHHHHHHHhhC
Confidence 3588999999754322223332 4444432 36999999999754321 11111 0111224667888888876544
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
++.+++.|+|||+||++|..++. ++.++..++.+.|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 67789999999999999999888 888999999998853
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.7e-06 Score=76.82 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=90.4
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh--C-------CCcceEEEEeccccChhHHhhhcchhhhhhhhhh
Q 004816 555 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--F-------RDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 625 (729)
Q Consensus 555 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~-------~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 625 (729)
+..+.+|+.+++..| ||+|+|.|+.++..+++ . -+.|+-+|.++|+.-.....
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~~~-------------- 153 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSKKL-------------- 153 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcchh--------------
Confidence 566677888888888 79999999999987775 1 12578889988875432100
Q ss_pred cCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHH
Q 004816 626 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 705 (729)
Q Consensus 626 ~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 705 (729)
.-..+...+++|.|-+.|+.|.++|...+..+++....+ .++.- .+||.+.+. ....+.+.+
T Consensus 154 ----------~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~vl~H-pggH~VP~~---~~~~~~i~~ 215 (230)
T KOG2551|consen 154 ----------DESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TVLEH-PGGHIVPNK---AKYKEKIAD 215 (230)
T ss_pred ----------hhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eEEec-CCCccCCCc---hHHHHHHHH
Confidence 001234467899999999999999999999999999864 44444 468987653 367788889
Q ss_pred HHHHHhC
Q 004816 706 FFARVVG 712 (729)
Q Consensus 706 fl~~~l~ 712 (729)
|+...+.
T Consensus 216 fi~~~~~ 222 (230)
T KOG2551|consen 216 FIQSFLQ 222 (230)
T ss_pred HHHHHHH
Confidence 9888775
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.8e-05 Score=76.89 Aligned_cols=129 Identities=9% Similarity=-0.071 Sum_probs=76.9
Q ss_pred CCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCC--CCcEEEEEEec
Q 004816 201 RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELWVGYIS 278 (729)
Q Consensus 201 dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~--~~~~l~~~d~~ 278 (729)
|+++ +|+.+..... ..+.|+++|.++++.....+....-.+ ..||||+.||....-.+...+ ....|-++|++
T Consensus 11 ~~~~-v~V~d~~~~~---~~~~v~ViD~~~~~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 11 DARR-VYVLDPGHFA---ATTQVYTIDGEAGRVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CCCE-EEEECCcccc---cCceEEEEECCCCEEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 5565 6676543100 026799999999876543332222233 499999999877641111111 23458999998
Q ss_pred CCCCeeeeEEecCCCC-CccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 279 ENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 279 ~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
+.+......+..... ...........||||+.+|+.+. .....+-++|+++++...
T Consensus 86 -t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 86 -THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred -cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-CCCCEEEEEECCCCcEEE
Confidence 676543333322210 00023346789999996667665 456778899999887654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.7e-06 Score=84.28 Aligned_cols=198 Identities=12% Similarity=0.030 Sum_probs=112.9
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC--CeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~--~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
..+.-..||||.++|+....+ ..+.++|.++|+.+.+.+.. ......+|-|||.+++.-+.+
T Consensus 270 ~~V~yi~wSPDdryLlaCg~~---------e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------- 333 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACGFD---------EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------- 333 (519)
T ss_pred CceEEEEECCCCCeEEecCch---------HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC-------
Confidence 456778899999998766433 24888999999887765433 345678999999997644422
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 347 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~ 347 (729)
..++.+|++ |.. ...-.+.. . .-+..++.++||+ ++.+..+ ..|..++.++...+.+..++..+..
T Consensus 334 -r~i~~wdlD--gn~--~~~W~gvr-~--~~v~dlait~Dgk~vl~v~~d----~~i~l~~~e~~~dr~lise~~~its- 400 (519)
T KOG0293|consen 334 -RTIIMWDLD--GNI--LGNWEGVR-D--PKVHDLAITYDGKYVLLVTVD----KKIRLYNREARVDRGLISEEQPITS- 400 (519)
T ss_pred -CcEEEecCC--cch--hhcccccc-c--ceeEEEEEcCCCcEEEEEecc----cceeeechhhhhhhccccccCceeE-
Confidence 348888887 332 11111110 0 2345678899999 5544433 3466666666555545444423322
Q ss_pred cccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec---cCCcceEEeeeeCC-EEEEEEeCCCCCceE
Q 004816 348 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD---IPFTDIDNITLGND-CLFVEGASGVEPSSV 423 (729)
Q Consensus 348 ~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt---~~~~~v~~~~~~~~-~~~~~~~~~~~~~~l 423 (729)
+... ++++++...-.+...+||-+. +...+++.. .+..-+.+.....+ .++..++. ...+
T Consensus 401 --------~~iS----~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE---D~kv 464 (519)
T KOG0293|consen 401 --------FSIS----KDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE---DSKV 464 (519)
T ss_pred --------EEEc----CCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcceEEecCC---CceE
Confidence 2332 555666666556666777443 222222222 12223444333333 44444333 3578
Q ss_pred EEEEcCCCcc
Q 004816 424 AKVTLDDHKL 433 (729)
Q Consensus 424 y~~d~~~~~~ 433 (729)
|..+..+|++
T Consensus 465 yIWhr~sgkl 474 (519)
T KOG0293|consen 465 YIWHRISGKL 474 (519)
T ss_pred EEEEccCCce
Confidence 9999888875
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.6e-06 Score=84.76 Aligned_cols=196 Identities=16% Similarity=0.199 Sum_probs=113.8
Q ss_pred EEEEc-CCCCCCCCCCCCCCCEEEEEcCCCCCCcccc--ch---hhhHHHhhCCcEEEEecCCCCC--CCchhHHHhhcc
Q 004816 474 AYYYP-PSNPIYQASPEEKPPLLVKSHGGPTSEARGI--LN---LSIQYWTSRGWAFVDVNYGGST--GYGREFRERLLG 545 (729)
Q Consensus 474 ~~l~~-P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~--~~---~~~~~la~~G~~v~~~d~rGs~--g~g~~~~~~~~~ 545 (729)
.|+.+ |...+ .+.-|+|+++|||+-...... +. .....+ . ...++++||.... .+|..+
T Consensus 108 ~Wlvk~P~~~~-----pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l-~-~~SILvLDYsLt~~~~~~~~y------ 174 (374)
T PF10340_consen 108 YWLVKAPNRFK-----PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLL-P-EVSILVLDYSLTSSDEHGHKY------ 174 (374)
T ss_pred EEEEeCCcccC-----CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHc-C-CCeEEEEeccccccccCCCcC------
Confidence 36676 64422 233599999999853322211 11 112222 2 5699999997543 122221
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh---C---CCcceEEEEeccccChhHHhhhc-----
Q 004816 546 RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA---F---RDTFKAGASLYGVADLSMLRAET----- 614 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~---~---~~~~~a~v~~~~~~d~~~~~~~~----- 614 (729)
..+..++.+..++|.+.. ..++|.+||-|+||.+++.++. + ...-+.+|+++|..++.......
T Consensus 175 ---PtQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~ 249 (374)
T PF10340_consen 175 ---PTQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYH 249 (374)
T ss_pred ---chHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcccc
Confidence 134788999999999442 2478999999999999988875 2 12358999999988775211100
Q ss_pred -----chhh----hhhhhhhcCC--hhhhhhcCccc---------ccCCC--CCCEEEEEeCCCCCCChHHHHHHHHHHH
Q 004816 615 -----HKFE----SRYIDNLVGS--EKDYYEKSPIN---------FVDKF--SCPIILFQGLEDKVVPPDQARKIYKALK 672 (729)
Q Consensus 615 -----~~~~----~~~~~~~~~~--~~~~~~~sp~~---------~~~~i--~~PvL~i~G~~D~~vp~~~~~~~~~~l~ 672 (729)
+... ..+.....++ .+......|.. ..+.| +.-++++.|+++-. ..+.+++.+.+.
T Consensus 250 ~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf--rddI~~~~~~~~ 327 (374)
T PF10340_consen 250 DNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF--RDDILEWAKKLN 327 (374)
T ss_pred ccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc--HHHHHHHHHHHh
Confidence 0000 0111111111 11111111111 11111 25799999998744 578899999998
Q ss_pred hCCC-----CEEEEEECCCCcc
Q 004816 673 ENGL-----PVALVEYEGEQHG 689 (729)
Q Consensus 673 ~~g~-----~~~~~~~~~~gH~ 689 (729)
..+. ..++.+-+++.|.
T Consensus 328 ~~~~~~~~~~~nv~~~~~G~Hi 349 (374)
T PF10340_consen 328 DVKPNKFSNSNNVYIDEGGIHI 349 (374)
T ss_pred hcCccccCCcceEEEecCCccc
Confidence 6543 3577788888885
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-05 Score=84.18 Aligned_cols=231 Identities=12% Similarity=0.083 Sum_probs=134.9
Q ss_pred EECCEEEEEECCCCcEEEEeCCCCCCC---CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 152 IFGDTVIFSNYKDQRLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 152 ~~~~~i~~~~~~~~~l~~~d~~~~~~~---~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.++..+ .....++.+.++++.+ .. .+.+.. ....+.+.+|||||+.++-...+ ..|.++|+
T Consensus 169 ~~g~~l-~~~~~~~~i~~~~~~~--~~~~~~~~l~~----h~~~v~~~~fs~d~~~l~s~s~D---------~tiriwd~ 232 (456)
T KOG0266|consen 169 PDGRAL-AAASSDGLIRIWKLEG--IKSNLLRELSG----HTRGVSDVAFSPDGSYLLSGSDD---------KTLRIWDL 232 (456)
T ss_pred CCCCeE-EEccCCCcEEEeeccc--ccchhhccccc----cccceeeeEECCCCcEEEEecCC---------ceEEEeec
Confidence 334443 3333455667777654 33 222222 24567899999999977666554 46888888
Q ss_pred -CCCce-EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 229 -NGQNI-QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 229 -~~g~~-~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
+.+.. +.+..........+|+|+|+.|+-.+.| ..+.++|+. +|+. ...+.++. ..+...+++
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D--------~tvriWd~~-~~~~--~~~l~~hs----~~is~~~f~ 297 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDD--------GTVRIWDVR-TGEC--VRKLKGHS----DGISGLAFS 297 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCC--------CcEEEEecc-CCeE--EEeeeccC----CceEEEEEC
Confidence 44444 4454445667889999999766655532 348888988 6766 56777776 667788999
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEE---EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~---~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
+||+++..... . ..|.++|..++..+ .+.... ... +. ....|.+ ++ .++++...++...+|-+
T Consensus 298 ~d~~~l~s~s~-d--~~i~vwd~~~~~~~~~~~~~~~~-~~~-~~-----~~~~fsp---~~-~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 298 PDGNLLVSASY-D--GTIRVWDLETGSKLCLKLLSGAE-NSA-PV-----TSVQFSP---NG-KYLLSASLDRTLKLWDL 363 (456)
T ss_pred CCCCEEEEcCC-C--ccEEEEECCCCceeeeecccCCC-CCC-ce-----eEEEECC---CC-cEEEEecCCCeEEEEEc
Confidence 99995555543 3 45667788888743 222211 110 12 1234442 44 45555556666667654
Q ss_pred ECCCCc-eEeeccCCcceEEe----eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 384 DDFGHS-LSLLDIPFTDIDNI----TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 384 d~~~g~-~~~lt~~~~~v~~~----~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
..+. ....+.....+..+ ...++.+++..+.. ..++.+++.++.
T Consensus 364 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d---~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 364 --RSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED---GSVYVWDSSSGG 412 (456)
T ss_pred --cCCcceeeecccCCcceeEecccccCCCCeEEEEeCC---ceEEEEeCCccc
Confidence 3333 33333332222222 34455666655543 357788877654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00022 Score=68.13 Aligned_cols=194 Identities=13% Similarity=0.132 Sum_probs=118.0
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.++.+-..+..|.+++..++ ....-.+..++.....+...+|||.|+.|+..+-+. ...++.-..++-+.
T Consensus 28 ~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~---------t~~Iw~k~~~efec 97 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA---------TVVIWKKEDGEFEC 97 (312)
T ss_pred eEEEeecCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEEEeeccc---------eEEEeecCCCceeE
Confidence 36666666667878877631 222222222222345678899999999887766543 33444444455444
Q ss_pred ee--eCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEE
Q 004816 236 LV--SGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 236 lt--~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
+. +|. ...-..+||++|++||-.+.+ ..+|++.++++++..-..++.++- +.+-.+.|.|-..|+
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSRD--------KSVWiWe~deddEfec~aVL~~Ht----qDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSRD--------KSVWIWEIDEDDEFECIAVLQEHT----QDVKHVIWHPTEDLL 165 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeCC--------CeEEEEEecCCCcEEEEeeecccc----ccccEEEEcCCccee
Confidence 43 333 345578999999999988843 348888877556665566666665 567788999975688
Q ss_pred EEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 313 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
|.... .+.-.+|+-+. ++....+...+. ...-.|+. .|.+ .+.++ .+..+++...||++
T Consensus 166 ~S~SY-DnTIk~~~~~~-dddW~c~~tl~g-~~~TVW~~-----~F~~---~G~rl-~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 166 FSCSY-DNTIKVYRDED-DDDWECVQTLDG-HENTVWSL-----AFDN---IGSRL-VSCSDDGTVSIWRL 224 (312)
T ss_pred EEecc-CCeEEEEeecC-CCCeeEEEEecC-ccceEEEE-----EecC---CCceE-EEecCCcceEeeee
Confidence 88877 66677887654 443332222111 11346654 3432 34444 45556788888873
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-05 Score=80.23 Aligned_cols=164 Identities=16% Similarity=0.196 Sum_probs=100.9
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCC--CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhh-----
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADE--KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFE----- 618 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~--~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~----- 618 (729)
+|.-.+.|+..|+.++.+.-.-.. -++.++|+|+|||+|..++. .|-.|.+++-.++..-...-.-......
T Consensus 158 ~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~ 237 (403)
T PF11144_consen 158 FGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYI 237 (403)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccc
Confidence 444457888888888888733222 48999999999999999998 8999999987776543211100000000
Q ss_pred ----h---------hhhhhhcC---------ChhhhhhcCccc--c---cCCC-CCC-EEEEEeCCCCCCChHHHHHHHH
Q 004816 619 ----S---------RYIDNLVG---------SEKDYYEKSPIN--F---VDKF-SCP-IILFQGLEDKVVPPDQARKIYK 669 (729)
Q Consensus 619 ----~---------~~~~~~~~---------~~~~~~~~sp~~--~---~~~i-~~P-vL~i~G~~D~~vp~~~~~~~~~ 669 (729)
. .+....|. ..+.+.-++.+. | .++. +.| ...+|+..|..+|+++-.++++
T Consensus 238 ~~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~ 317 (403)
T PF11144_consen 238 CSGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYE 317 (403)
T ss_pred ccccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHH
Confidence 0 00000110 111111111111 1 1112 334 5667999999999999999999
Q ss_pred HHHhCCCCEEEEEECCC-----------CcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 670 ALKENGLPVALVEYEGE-----------QHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 670 ~l~~~g~~~~~~~~~~~-----------gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.++..|-+++++.+.++ .|++.. .....+...+.-+.+.+.
T Consensus 318 ~l~~lgfda~l~lIkdes~iDGkfIKnl~HGmgi--s~k~Lf~KeLp~~lek~~ 369 (403)
T PF11144_consen 318 ILKNLGFDATLHLIKDESEIDGKFIKNLEHGMGI--SDKALFKKELPLMLEKLQ 369 (403)
T ss_pred HHHHcCCCeEEEEecChhhccchheeccccCCCC--CHHHHHHHHhHHHHHHhh
Confidence 99999999999999543 576543 234555555665555554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00028 Score=70.63 Aligned_cols=229 Identities=15% Similarity=0.075 Sum_probs=126.2
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
.++|..--..-++++|..+ ++. ..+...+ + ...+...+|||||++|+ +.+++.+. ....|-++|.. ...+
T Consensus 19 avafaRRPG~~~~v~D~~~--g~~~~~~~a~~-g-RHFyGHg~fs~dG~~Ly-tTEnd~~~---g~G~IgVyd~~-~~~~ 89 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRT--GQLLQRLWAPP-G-RHFYGHGVFSPDGRLLY-TTENDYET---GRGVIGVYDAA-RGYR 89 (305)
T ss_pred EEEEEeCCCcEEEEEEcCC--CceeeEEcCCC-C-CEEecCEEEcCCCCEEE-EeccccCC---CcEEEEEEECc-CCcE
Confidence 4555543344789999988 544 4555442 1 24557889999999755 44443222 25778889988 3344
Q ss_pred EeeeCCCeee---eeeeCCCCCeEEEEEec---CC-----CCCCC--CcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 235 VLVSGSDFYA---FPRMDPRGERMAWIEWH---HP-----NMPWD--KAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 235 ~lt~~~~~~~---~~~~SPDG~~la~~~~~---~~-----~~~~~--~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
++.+-...-. ...|.|||+.|+...-. ++ ..+-+ ...|-.+|.. +|++.....++..... .++.
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~ll~q~~Lp~~~~~--lSiR 166 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGALLEQVELPPDLHQ--LSIR 166 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCceeeeeecCccccc--ccee
Confidence 4433221112 24799999999876521 11 01001 2346677777 7886444444332212 6788
Q ss_pred CceeCCCCcEEEEEecCCCce----E-EEEEEcCCCeEEEeeccCccccCCcccc---cCcceeeeeecCCCCEEEEEEE
Q 004816 302 EPKWSSKGELFFVTDRKNGFW----N-LHKWIESNNEVLAIYSLDAEFSRPLWVF---GINSYEIIQSHGEKNLIACSYR 373 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~----~-l~~~d~~~g~~~~l~~~~~~~~~~~w~~---~~~~~~~l~~~~~~~~l~~~s~ 373 (729)
.++|.+||.++|..+. +|.. - |.+.+ .++...+...+ ...|.. -.-++.+.. +++.+.+++-
T Consensus 167 HLa~~~~G~V~~a~Q~-qg~~~~~~PLva~~~--~g~~~~~~~~p----~~~~~~l~~Y~gSIa~~~---~g~~ia~tsP 236 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQY-QGDPGDAPPLVALHR--RGGALRLLPAP----EEQWRRLNGYIGSIAADR---DGRLIAVTSP 236 (305)
T ss_pred eEEecCCCcEEEEEec-CCCCCccCCeEEEEc--CCCcceeccCC----hHHHHhhCCceEEEEEeC---CCCEEEEECC
Confidence 9999999997777666 4431 1 33433 23323333221 112221 112445543 5667777777
Q ss_pred ECCeEEEEEEECCCCceEeeccCCcceEEeeeeCCE
Q 004816 374 QNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDC 409 (729)
Q Consensus 374 ~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~ 409 (729)
+.+...+| |..+|++..... ..++..+...++.
T Consensus 237 rGg~~~~~--d~~tg~~~~~~~-l~D~cGva~~~~~ 269 (305)
T PF07433_consen 237 RGGRVAVW--DAATGRLLGSVP-LPDACGVAPTDDG 269 (305)
T ss_pred CCCEEEEE--ECCCCCEeeccc-cCceeeeeecCCc
Confidence 77766666 777887654432 3344555333333
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.7e-05 Score=82.40 Aligned_cols=151 Identities=9% Similarity=0.087 Sum_probs=93.1
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCC-------CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSS-------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~-------~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
+.++++...++.|.+|++.++ +. ...+... ...+....|+|++..++++...+ ..|.++|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~-~~~~~~~~~l~~L~gH----~~~V~~l~f~P~~~~iLaSgs~D--------gtVrIWD 154 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEE-GLTQNISDPIVHLQGH----TKKVGIVSFHPSAMNVLASAGAD--------MVVNVWD 154 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCC-ccccccCcceEEecCC----CCcEEEEEeCcCCCCEEEEEeCC--------CEEEEEE
Confidence 456677777889999998751 21 1223322 34567889999875445544332 4688999
Q ss_pred cCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 228 LNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 228 l~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
+.+++..... .........+|+|||+.|+..+. ...|.++|+. +++. +..+.... . .......|.
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~--------Dg~IrIwD~r-sg~~--v~tl~~H~-~--~~~~~~~w~ 220 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK--------DKKLNIIDPR-DGTI--VSSVEAHA-S--AKSQRCLWA 220 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC--------CCEEEEEECC-CCcE--EEEEecCC-C--CcceEEEEc
Confidence 9987654433 34456778899999998876552 3458999988 6654 32333332 0 122457899
Q ss_pred CCCc-EEEEEecCCCceEEEEEEcCCC
Q 004816 307 SKGE-LFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 307 pDG~-l~~~~~~~~g~~~l~~~d~~~g 332 (729)
+++. ++...........|.++|+...
T Consensus 221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 9877 4433322122345777787653
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.7e-05 Score=75.87 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=85.0
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce--
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-- 233 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-- 233 (729)
.+.+...+..+-+||+.+ ..+- ..... ..-+...+|||||++|+--+.+ +.|.++|.++|+.
T Consensus 129 ~l~tGsGD~TvR~WD~~T--eTp~~t~KgH----~~WVlcvawsPDgk~iASG~~d---------g~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLDT--ETPLFTCKGH----KNWVLCVAWSPDGKKIASGSKD---------GSIRLWDPKTGQQIG 193 (480)
T ss_pred eEEecCCCceEEeeccCC--CCcceeecCC----ccEEEEEEECCCcchhhccccC---------CeEEEecCCCCCccc
Confidence 344444566788889887 3322 22222 3556778999999998765543 5699999988764
Q ss_pred EEeeeCCCeeeeeee-----CCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 234 QVLVSGSDFYAFPRM-----DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~-----SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
+.|......+...+| .|.+++||-.+. ...+.++|+. .++. +.++.++. ..+.-+.|-.+
T Consensus 194 ~~l~gH~K~It~Lawep~hl~p~~r~las~sk--------Dg~vrIWd~~-~~~~--~~~lsgHT----~~VTCvrwGG~ 258 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEPLHLVPPCRRLASSSK--------DGSVRIWDTK-LGTC--VRTLSGHT----ASVTCVRWGGE 258 (480)
T ss_pred ccccCcccceeEEeecccccCCCccceecccC--------CCCEEEEEcc-CceE--EEEeccCc----cceEEEEEcCC
Confidence 455555566777777 678887775542 2347888887 5554 66777776 66777888655
Q ss_pred CcEEEEEec
Q 004816 309 GELFFVTDR 317 (729)
Q Consensus 309 G~l~~~~~~ 317 (729)
| ++|....
T Consensus 259 g-liySgS~ 266 (480)
T KOG0271|consen 259 G-LIYSGSQ 266 (480)
T ss_pred c-eEEecCC
Confidence 5 5555543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00016 Score=79.45 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=100.4
Q ss_pred CCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 146 ~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
++..+.++.+ ..+.....+.+|++||+..+....+.+... ...+...+|+|+|+.|+..+.+ ..+.
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH----~~~v~~~~f~p~g~~i~Sgs~D---------~tvr 271 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH----STYVTSVAFSPDGNLLVSGSDD---------GTVR 271 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC----CCceEEEEecCCCCEEEEecCC---------CcEE
Confidence 3444444433 356666678899999994310233455444 4556888999999765555443 3588
Q ss_pred EEEcCCCceEEe-eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccc-cccC
Q 004816 225 AIALNGQNIQVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE-SPTE 302 (729)
Q Consensus 225 ~~dl~~g~~~~l-t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~ 302 (729)
++|+.+++.... ....+..+..+|++||+.|+-.+. ...|.++|+. ++...-...+.+.. . . .+..
T Consensus 272 iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--------d~~i~vwd~~-~~~~~~~~~~~~~~-~--~~~~~~ 339 (456)
T KOG0266|consen 272 IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--------DGTIRVWDLE-TGSKLCLKLLSGAE-N--SAPVTS 339 (456)
T ss_pred EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC--------CccEEEEECC-CCceeeeecccCCC-C--CCceeE
Confidence 889998877554 445567888999999998876542 2349999998 66631022333332 1 2 3567
Q ss_pred ceeCCCCcEEEEEecCCCceEEEEEEcCCCe
Q 004816 303 PKWSSKGELFFVTDRKNGFWNLHKWIESNNE 333 (729)
Q Consensus 303 ~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~ 333 (729)
..|+|||+.+++... ++...+| |+..+.
T Consensus 340 ~~fsp~~~~ll~~~~-d~~~~~w--~l~~~~ 367 (456)
T KOG0266|consen 340 VQFSPNGKYLLSASL-DRTLKLW--DLRSGK 367 (456)
T ss_pred EEECCCCcEEEEecC-CCeEEEE--EccCCc
Confidence 889999995555544 3444454 555544
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-05 Score=81.14 Aligned_cols=222 Identities=8% Similarity=0.016 Sum_probs=133.9
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCC--CCEEEEEEeccCCCCCCcceEEEEEEcCCC-
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQ- 231 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPd--G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g- 231 (729)
.++.+..-+|.+-+|.... .... .+-.. ..++.+..|+|. +..++-.+.+. .+.++++++.
T Consensus 188 ~~laT~swsG~~kvW~~~~--~~~~~~l~gH----~~~v~~~~fhP~~~~~~lat~s~Dg---------tvklw~~~~e~ 252 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQ--CNLLQTLRGH----TSRVGAAVFHPVDSDLNLATASADG---------TVKLWKLSQET 252 (459)
T ss_pred CeEEEeecCCceeEeecCC--cceeEEEecc----ccceeeEEEccCCCccceeeeccCC---------ceeeeccCCCc
Confidence 4445555567777787765 4332 33333 467788999997 45555544433 3445566553
Q ss_pred ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 232 NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 232 ~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
...+|+.........+|.|+|++|+-.+.|.. -.++|+. ++.. .....++. ..+...+|.+||.|
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t--------WRlWD~~-tk~E--lL~QEGHs----~~v~~iaf~~DGSL 317 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDST--------WRLWDLE-TKSE--LLLQEGHS----KGVFSIAFQPDGSL 317 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccc--------hhhcccc-cchh--hHhhcccc----cccceeEecCCCce
Confidence 34566666677888999999999998876653 2244666 4432 44556666 77889999999997
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
+.+... ....+|| |+.+|...-... ...++-+..|+ .+++.+.+...|+..+||.+... ..+
T Consensus 318 ~~tGGl-D~~~RvW--DlRtgr~im~L~gH~k~I~~V~fs-------------PNGy~lATgs~Dnt~kVWDLR~r-~~l 380 (459)
T KOG0272|consen 318 AATGGL-DSLGRVW--DLRTGRCIMFLAGHIKEILSVAFS-------------PNGYHLATGSSDNTCKVWDLRMR-SEL 380 (459)
T ss_pred eeccCc-cchhhee--ecccCcEEEEecccccceeeEeEC-------------CCceEEeecCCCCcEEEeeeccc-ccc
Confidence 766544 3444554 777876554442 22333344455 34566667777888889866432 223
Q ss_pred EeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEE
Q 004816 391 SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 391 ~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
-.+.....-|..+ .+..+++++.++ -++...+|.
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs 416 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWS 416 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcc-cCcceeeec
Confidence 3444444556666 334566665554 443444443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00011 Score=73.67 Aligned_cols=189 Identities=13% Similarity=0.060 Sum_probs=102.3
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
+..+++....+........+++||||+.++++..... ...||+...++ ..+.+..+. ....|.|++||...+
T Consensus 10 ~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~------~~~L~~~~~~~-~~~~~~~g~-~l~~PS~d~~g~~W~ 81 (253)
T PF10647_consen 10 GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDG------GRSLYVGPAGG-PVRPVLTGG-SLTRPSWDPDGWVWT 81 (253)
T ss_pred CceeECCCCcCcCCccccceEECCCCCeEEEEEEcCC------CCEEEEEcCCC-cceeeccCC-ccccccccCCCCEEE
Confidence 3445555432111235678999999999999982221 36799988764 444443333 677899999976443
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEc---CCC
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE---SNN 332 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~---~~g 332 (729)
+.. ... ...+.. +.. +++.....+-.... . ..+..+.+||||. ++++... .+..+|++.-+ ..|
T Consensus 82 v~~-~~~-----~~~~~~-~~~-~g~~~~~~v~~~~~-~--~~I~~l~vSpDG~RvA~v~~~-~~~~~v~va~V~r~~~g 149 (253)
T PF10647_consen 82 VDD-GSG-----GVRVVR-DSA-SGTGEPVEVDWPGL-R--GRITALRVSPDGTRVAVVVED-GGGGRVYVAGVVRDGDG 149 (253)
T ss_pred EEc-CCC-----ceEEEE-ecC-CCcceeEEeccccc-C--CceEEEEECCCCcEEEEEEec-CCCCeEEEEEEEeCCCC
Confidence 333 221 122222 323 34433333322221 0 1567899999998 8888766 44466664432 233
Q ss_pred eEEEee-------ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc
Q 004816 333 EVLAIY-------SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 333 ~~~~l~-------~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
..+.+. .......+..|. ++..|++.....+......+..+++..+.++....
T Consensus 150 ~~~~l~~~~~~~~~~~~~v~~v~W~-------------~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~~ 209 (253)
T PF10647_consen 150 VPRRLTGPRRVAPPLLSDVTDVAWS-------------DDSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVNL 209 (253)
T ss_pred CcceeccceEecccccCcceeeeec-------------CCCEEEEEeCCCCCceeEEEEccCCcccccCCCCC
Confidence 233332 111233344555 44455555544433222256777888877754443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00049 Score=66.56 Aligned_cols=231 Identities=13% Similarity=0.076 Sum_probs=136.5
Q ss_pred EEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccC-----------CC--
Q 004816 150 FRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR-----------QD-- 215 (729)
Q Consensus 150 ~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~-----------~~-- 215 (729)
+.|+.+ +.+.+...+|.|.+||.-+. .+...|+-. ..-+...++||.|++|+.---++. +.
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~----s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~ 135 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLP----SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNV 135 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecC----ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccc
Confidence 334433 55677778999999998763 344444433 355677889999998877421110 00
Q ss_pred -------------------------CCCcceEEEEEEcCCCceEEeeeC-CCeeeeeeeCC-CCCeEEEEEecCCCCCCC
Q 004816 216 -------------------------ALNSTTEIVAIALNGQNIQVLVSG-SDFYAFPRMDP-RGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 216 -------------------------~~~~~~~l~~~dl~~g~~~~lt~~-~~~~~~~~~SP-DG~~la~~~~~~~~~~~~ 268 (729)
.........++|+++|+..+...| .+......++| |++..+--+-
T Consensus 136 ~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c-------- 207 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC-------- 207 (343)
T ss_pred eeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc--------
Confidence 001122345567777765554443 34455678888 8885432221
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCc
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL 348 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 348 (729)
...-+++|+. .+.. +..+.+++ ..+..+.|-|+|. .|.+..+.+.-+|| |+...+...+...+.
T Consensus 208 D~~aklWD~R-~~~c--~qtF~ghe----sDINsv~ffP~G~-afatGSDD~tcRly--DlRaD~~~a~ys~~~------ 271 (343)
T KOG0286|consen 208 DKSAKLWDVR-SGQC--VQTFEGHE----SDINSVRFFPSGD-AFATGSDDATCRLY--DLRADQELAVYSHDS------ 271 (343)
T ss_pred ccceeeeecc-Ccce--eEeecccc----cccceEEEccCCC-eeeecCCCceeEEE--eecCCcEEeeeccCc------
Confidence 2235677877 5655 66788887 6678899999996 33332224666665 665555555543221
Q ss_pred ccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEE
Q 004816 349 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEG 414 (729)
Q Consensus 349 w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~ 414 (729)
-..+..++.|. ..++++|....+..-++|-. +++...-.|......|..+ ..+++..+...
T Consensus 272 ~~~gitSv~FS----~SGRlLfagy~d~~c~vWDt-lk~e~vg~L~GHeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 272 IICGITSVAFS----KSGRLLFAGYDDFTCNVWDT-LKGERVGVLAGHENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred ccCCceeEEEc----ccccEEEeeecCCceeEeec-cccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence 12244566776 56677777666666667632 4555555677667778887 45555444433
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-06 Score=88.29 Aligned_cols=78 Identities=27% Similarity=0.409 Sum_probs=63.6
Q ss_pred hhhcCcccccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc--ccHHHHHHHHHHHHH
Q 004816 632 YYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA--ENIKFTLEQQMVFFA 708 (729)
Q Consensus 632 ~~~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~fl~ 708 (729)
+...++...+.++. +|+|++||.+|..||..++..+++..+.. +.+..++++++|..... ....+.+..+.+||.
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~ 295 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLE 295 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHH
Confidence 44456666677777 69999999999999999999999998875 66888899999987642 333489999999999
Q ss_pred HHh
Q 004816 709 RVV 711 (729)
Q Consensus 709 ~~l 711 (729)
+++
T Consensus 296 ~~l 298 (299)
T COG1073 296 RHL 298 (299)
T ss_pred Hhc
Confidence 876
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-05 Score=80.88 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=109.4
Q ss_pred HHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEec-cccChhHHh----hhcc-hh---hhhhhh-h---hcC
Q 004816 561 FLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY-GVADLSMLR----AETH-KF---ESRYID-N---LVG 627 (729)
Q Consensus 561 ~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~-~~~d~~~~~----~~~~-~~---~~~~~~-~---~~~ 627 (729)
++.+...++.++.++.|.|==|.++..++..++|++|++.+. .+.++.... .... .+ ...|.. . .++
T Consensus 162 ~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~ 241 (367)
T PF10142_consen 162 FLKKKFGVNIEKFVVTGASKRGWTTWLTAAVDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLD 241 (367)
T ss_pred HHHhhcCCCccEEEEeCCchHhHHHHHhhccCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcC
Confidence 333345667899999999999999988888778999888653 445544321 1111 10 011111 1 111
Q ss_pred Ch---hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHH
Q 004816 628 SE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQM 704 (729)
Q Consensus 628 ~~---~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 704 (729)
.+ +.....+|+.+.++++.|-|++.|..|....+..+.-++..|+. +..+..+|+.+|.... ....+.+.
T Consensus 242 tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l~ 314 (367)
T PF10142_consen 242 TPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVVQSLR 314 (367)
T ss_pred CHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHHHHHH
Confidence 22 34566799999999999999999999999999999999999985 5589999999998765 67788899
Q ss_pred HHHHHHhCCCCCC
Q 004816 705 VFFARVVGHFDVA 717 (729)
Q Consensus 705 ~fl~~~l~~~~~~ 717 (729)
.|+...+.+.+-+
T Consensus 315 ~f~~~~~~~~~lP 327 (367)
T PF10142_consen 315 AFYNRIQNGRPLP 327 (367)
T ss_pred HHHHHHHcCCCCC
Confidence 9999987755443
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.3e-05 Score=86.81 Aligned_cols=263 Identities=13% Similarity=0.051 Sum_probs=136.0
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeec-CCCCCCCceeeecceecCCCCEEEE-EEeccCCCCCCcceEEEEEEcCCCc
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVT-VREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~l-t~~~~~~~~~~~~~~~SPdG~~l~~-~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
.+|+|+....++|.++|.++ ..++.+ +.. ......|.|||||++|+| +.-..-.. ...||+.++.+..
T Consensus 319 tkiAfv~~~~~~L~~~D~dG--~n~~~ve~~~----~~~i~sP~~SPDG~~vAY~ts~e~~~g----~s~vYv~~L~t~~ 388 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTK--GASRAVEIED----TISVYHPDISPDGKKVAFCTGIEGLPG----KSSVYVRNLNASG 388 (912)
T ss_pred eeEEEEEcCCCeEEEEecCC--CCceEEEecC----CCceecCcCCCCCCEEEEEEeecCCCC----CceEEEEehhccC
Confidence 37999987667999999997 777777 554 355688999999999999 54332011 3679999998743
Q ss_pred eEEeeeCCCeeeeeee--CCCCCe-EEEEEecCCC---CCCCCcEEEEEEecCCCCeee-eEEecCCCCCccccccCcee
Q 004816 233 IQVLVSGSDFYAFPRM--DPRGER-MAWIEWHHPN---MPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 233 ~~~lt~~~~~~~~~~~--SPDG~~-la~~~~~~~~---~~~~~~~l~~~d~~~~g~~~~-~~~~~~~~~~~~~~~~~~~w 305 (729)
...+--.-....-|+| .+.|.. |+|++....+ ..|....-|.+... +|+... ..++.+. .+--.
T Consensus 389 ~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~-~gkfg~p~kl~dga--------~hggv 459 (912)
T TIGR02171 389 SGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFA-NGKFGTPKKLFDGA--------YHGGV 459 (912)
T ss_pred CCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEec-CCCCCCchhhhccc--------ccccc
Confidence 2222111112344666 566655 6677633222 13445567899988 787643 3333332 12234
Q ss_pred CCCCcEEEEEecCCCceEEEEEEcCCCeEEEeecc-CccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 306 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 306 spDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
|.|.+|+++..+ -=..++.--++.+++-..-..+ .+...+.. ..+.+.-.||+=.+.-+.-++...-.-..+|.+.|
T Consensus 460 s~~~~lavtga~-llr~~~~~~~~~~~~~~vwyn~eqacn~sl~-~d~~~rt~fldfgg~tg~~fvg~~y~~he~~lvad 537 (912)
T TIGR02171 460 SEDLNLAVSGAR-LLRAHVANEDVDNGKDDVWYNGEQACNASLA-KDGSKRTLFLDFGGSTGQAFVGQKYGVHERLLVAD 537 (912)
T ss_pred ccCCceeeehhh-HhhhhhcccccccCccceeecchhccchhhh-ccCCcceEEEecCCccchhhccccccceeEEEEec
Confidence 556556665443 1111111111222222222211 11110000 01111112221000000111111112234677888
Q ss_pred CCCCceEeeccCCc---ceEEeee-eCCEEEEEEeCCCCC-ceEEEEEcCCCcceeeee
Q 004816 385 DFGHSLSLLDIPFT---DIDNITL-GNDCLFVEGASGVEP-SSVAKVTLDDHKLKAVDF 438 (729)
Q Consensus 385 ~~~g~~~~lt~~~~---~v~~~~~-~~~~~~~~~~~~~~~-~~ly~~d~~~~~~~~lt~ 438 (729)
-.|+.++.+..+.. +...+.. ..+.++..-.+.+.. ..|.++++..+++..|.+
T Consensus 538 s~gklv~~v~ap~gytfdh~ew~~~~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~e 596 (912)
T TIGR02171 538 SKGKLVRAVAAPAGYTFDHTEWVTGRSNLAVATLTNVNGAHKKIALINLSDSKVTELVE 596 (912)
T ss_pred CCCchhhhccCCCCccccchhhhcCCCceEEEEeecCCCccceEEEEEcCCCceEEeec
Confidence 77777777776642 2233333 345555555555544 449999999998866654
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-05 Score=81.46 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=41.7
Q ss_pred cCCCCCCEEEEEeCCCCCCChHHHHHH-------HHHHHhCCCCEEEEEECCCCcc
Q 004816 641 VDKFSCPIILFQGLEDKVVPPDQARKI-------YKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 641 ~~~i~~PvL~i~G~~D~~vp~~~~~~~-------~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
+++|++|+.++++..|.+.|++|+..+ .+.++.+|..+.+.+-+..||-
T Consensus 293 Lr~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 293 LRNIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred hhhCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 778999999999999999999999443 4557778888888888999994
|
Their function is unknown. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.2e-05 Score=80.32 Aligned_cols=198 Identities=11% Similarity=0.001 Sum_probs=100.9
Q ss_pred EEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-E
Q 004816 158 IFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-V 235 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~ 235 (729)
+.+...+++|.++|.++ .+ ...+..+ ........+||||+++ |+...+ ..|.++|+.+++.. +
T Consensus 9 ~V~~~~~~~v~viD~~t--~~~~~~i~~~----~~~h~~~~~s~Dgr~~-yv~~rd--------g~vsviD~~~~~~v~~ 73 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGAT--NKVVARIPTG----GAPHAGLKFSPDGRYL-YVANRD--------GTVSVIDLATGKVVAT 73 (369)
T ss_dssp EEEEGGGTEEEEEETTT---SEEEEEE-S----TTEEEEEE-TT-SSEE-EEEETT--------SEEEEEETTSSSEEEE
T ss_pred EEEecCCCEEEEEECCC--CeEEEEEcCC----CCceeEEEecCCCCEE-EEEcCC--------CeEEEEECCcccEEEE
Confidence 34455567999999887 43 3444433 1224556799999985 554432 46999999998754 4
Q ss_pred eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcc-ccccCceeCCCCcEEEE
Q 004816 236 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV-ESPTEPKWSSKGELFFV 314 (729)
Q Consensus 236 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~~wspDG~l~~~ 314 (729)
+..+ ....+.++||||++|+..... ..++.++|.+ +.+........+...+-. ..+..+.-+|+...++.
T Consensus 74 i~~G-~~~~~i~~s~DG~~~~v~n~~-------~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 74 IKVG-GNPRGIAVSPDGKYVYVANYE-------PGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp EE-S-SEEEEEEE--TTTEEEEEEEE-------TTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred EecC-CCcceEEEcCCCCEEEEEecC-------CCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 4333 345678999999998766543 2458889877 555422211111110000 11223445666653333
Q ss_pred EecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 315 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 315 ~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
+.. ...+++.+|....+...+...... .. .++..|.+ ++++++..... ...|..+|.++++...+
T Consensus 145 ~lk--d~~~I~vVdy~d~~~~~~~~i~~g--~~-----~~D~~~dp---dgry~~va~~~--sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 145 NLK--DTGEIWVVDYSDPKNLKVTTIKVG--RF-----PHDGGFDP---DGRYFLVAANG--SNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EET--TTTEEEEEETTTSSCEEEEEEE----TT-----EEEEEE-T---TSSEEEEEEGG--GTEEEEEETTTTEEEEE
T ss_pred EEc--cCCeEEEEEeccccccceeeeccc--cc-----ccccccCc---ccceeeecccc--cceeEEEeeccceEEEE
Confidence 332 234788888665432222211100 00 01223332 66666655433 33788889888776543
|
... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00048 Score=82.86 Aligned_cols=222 Identities=14% Similarity=0.109 Sum_probs=121.7
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCC-C-Cc------ccccccccCCceEEEECCEEEE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-E-YA------VRTTAQEYGGGAFRIFGDTVIF 159 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~-~-~~------~~~~~~~~~~~~~~~~~~~i~~ 159 (729)
..++++.+++ ++.+|+.+.. .+| ++.++.. |.....+.. + .+ ....+..+.+.++..+++.|++
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~---n~r--I~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSN---HNR--IVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred CCCceEEEECCCCeEEEEECC---CCe--EEEEeCC--CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 4567889988 7889888752 344 4444444 222111111 0 00 0112222333344444556666
Q ss_pred EECCCCcEEEEeCCCCCCCCeecCCCC-------CC-C-----ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 160 SNYKDQRLYKHSIDSKDSSPLPITPDY-------GE-P-----LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 160 ~~~~~~~l~~~d~~~~~~~~~~lt~~~-------~~-~-----~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
.+.....|.++|+.+ +..+.+.... +. . -....+.+++|++..|+.+... .+.|+++
T Consensus 641 aDt~n~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~--------~~~I~v~ 710 (1057)
T PLN02919 641 ADTENHALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG--------QHQIWEY 710 (1057)
T ss_pred EeCCCceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC--------CCeEEEE
Confidence 665556888899876 5555443210 00 0 0112467899977765544322 2679999
Q ss_pred EcCCCceEEeeeCC---------------CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE---
Q 004816 227 ALNGQNIQVLVSGS---------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC--- 288 (729)
Q Consensus 227 dl~~g~~~~lt~~~---------------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~--- 288 (729)
+..++..+.+.... ..-.+.+++|||++|++... .+..|.++|++ ++......-
T Consensus 711 d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-------~n~~Irv~D~~-tg~~~~~~gg~~ 782 (1057)
T PLN02919 711 NISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-------ESSSIRALDLK-TGGSRLLAGGDP 782 (1057)
T ss_pred ECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-------CCCeEEEEECC-CCcEEEEEeccc
Confidence 99887665443210 11235689999999877653 23569999987 554311100
Q ss_pred --------ecCCCC----CccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 289 --------VAGFDP----TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 289 --------~~~~~~----~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
+...+. ........+.+++||++ |+++. +..+|.++|++++....+.
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-YVADs--~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-YVADS--YNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcE-EEEEC--CCCEEEEEECCCCeEEEEe
Confidence 000000 00012346678999975 45554 4567999999988877665
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.001 Score=73.78 Aligned_cols=211 Identities=14% Similarity=0.096 Sum_probs=110.0
Q ss_pred ceeeecceecCC-CCEEEEEEeccCCCCCCcceEEEEEEcCCCce---------EEeeeCCCeeeeeeeCCCCCeEEEEE
Q 004816 190 LVSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNI---------QVLVSGSDFYAFPRMDPRGERMAWIE 259 (729)
Q Consensus 190 ~~~~~~~~~SPd-G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~---------~~lt~~~~~~~~~~~SPDG~~la~~~ 259 (729)
...+.+..|+|+ ++.|+....+ ..|.++++.++.. ..+..........+|+|+++.++.+.
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~D---------gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSED---------LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCC---------CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 345788999997 5655444432 4577888765321 12333344567889999999876554
Q ss_pred ecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEE-ee
Q 004816 260 WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IY 338 (729)
Q Consensus 260 ~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~ 338 (729)
.. ...|.++|+. +++. ...+. .. ..+..+.|+|||+++..+.. .+ .|.++|+.+++... +.
T Consensus 145 S~-------DgtIrIWDl~-tg~~--~~~i~-~~----~~V~SlswspdG~lLat~s~-D~--~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 145 GF-------DSFVNIWDIE-NEKR--AFQIN-MP----KKLSSLKWNIKGNLLSGTCV-GK--HMHIIDPRKQEIASSFH 206 (568)
T ss_pred eC-------CCeEEEEECC-CCcE--EEEEe-cC----CcEEEEEECCCCCEEEEEec-CC--EEEEEECCCCcEEEEEe
Confidence 22 2348899998 5653 22222 22 34578899999995544433 23 46777888876543 22
Q ss_pred ccCccccC-CcccccCcceeeeeecCCCCEEEEEEEEC-CeEEEEEEECCC-Cc-eEeecc--CCcceEEe-eeeCCEEE
Q 004816 339 SLDAEFSR-PLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDFG-HS-LSLLDI--PFTDIDNI-TLGNDCLF 411 (729)
Q Consensus 339 ~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~l~~~s~~~-g~~~ly~~d~~~-g~-~~~lt~--~~~~v~~~-~~~~~~~~ 411 (729)
........ ..|.. .|.+ +++.|+.+...+ ..+.|.++|+.. ++ +..+.. ....+... ..+.+.++
T Consensus 207 gH~g~~~s~~v~~~-----~fs~---d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 207 IHDGGKNTKNIWID-----GLGG---DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred cccCCceeEEEEee-----eEcC---CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 11111111 12221 1111 555555444332 224566667653 22 222222 12223333 33334444
Q ss_pred EEEeCCCCCceEEEEEcCCCcceeeee
Q 004816 412 VEGASGVEPSSVAKVTLDDHKLKAVDF 438 (729)
Q Consensus 412 ~~~~~~~~~~~ly~~d~~~~~~~~lt~ 438 (729)
+. ++.+ ..++.+++..+....|++
T Consensus 279 ls-GkGD--~tIr~~e~~~~~~~~l~~ 302 (568)
T PTZ00420 279 LI-GKGD--GNCRYYQHSLGSIRKVNE 302 (568)
T ss_pred EE-EECC--CeEEEEEccCCcEEeecc
Confidence 44 4333 345666665666555553
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00061 Score=81.96 Aligned_cols=257 Identities=12% Similarity=0.097 Sum_probs=138.2
Q ss_pred cCCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCC-CCC-C--------CceeeecceecCCCCEEEEEEeccCC
Q 004816 145 YGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITP-DYG-E--------PLVSYADGIFDPRFNRYVTVREDRRQ 214 (729)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~-~~~-~--------~~~~~~~~~~SPdG~~l~~~~~~~~~ 214 (729)
+++-++...++.+++.+...++|.++|.++ .....+.. +.. . .-.+....+++++|+.| |+.+..
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L-YVaDt~-- 644 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL-YVADTE-- 644 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE-EEEeCC--
Confidence 344444445667888877778999999875 43333322 100 0 00123566789998864 555433
Q ss_pred CCCCcceEEEEEEcCCCceEEeeeCC-----------------CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEe
Q 004816 215 DALNSTTEIVAIALNGQNIQVLVSGS-----------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI 277 (729)
Q Consensus 215 ~~~~~~~~l~~~dl~~g~~~~lt~~~-----------------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~ 277 (729)
+..|.++|+.++.++.+.... ..-.+.+++|++..|++... .+.+|+++|.
T Consensus 645 -----n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-------~~~~I~v~d~ 712 (1057)
T PLN02919 645 -----NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-------GQHQIWEYNI 712 (1057)
T ss_pred -----CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC-------CCCeEEEEEC
Confidence 256889999888777664310 01124589997777766552 2355999988
Q ss_pred cCCCCeeeeEEecCC------C--CC---ccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCc----
Q 004816 278 SENGDVYKRVCVAGF------D--PT---IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---- 342 (729)
Q Consensus 278 ~~~g~~~~~~~~~~~------~--~~---~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~---- 342 (729)
. ++... .+.+. + .. -......++++|||+.+|+++. +..+|.++|++++..+.+.....
T Consensus 713 ~-~g~v~---~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 713 S-DGVTR---VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred C-CCeEE---EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCc
Confidence 7 55431 11110 0 00 0013345789999984455554 45689999998876554431110
Q ss_pred ---ccc---CC---cccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeecc-CC-------------cc
Q 004816 343 ---EFS---RP---LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI-PF-------------TD 399 (729)
Q Consensus 343 ---~~~---~~---~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~-~~-------------~~ 399 (729)
.++ .+ ........+.+. .++.+|++.. +...|.++|.+++.+..+.. +. ..
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd----~dG~LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCA----KDGQIYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEe----CCCcEEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence 000 00 000112234444 3334665543 44567777888887665532 11 11
Q ss_pred eEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 400 IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 400 v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
...+ ..++++++ ++.+. ...|.++|+++++.
T Consensus 861 P~GIavd~dG~ly-VaDt~--Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 861 PAGLALGENGRLF-VADTN--NSLIRYLDLNKGEA 892 (1057)
T ss_pred ceEEEEeCCCCEE-EEECC--CCEEEEEECCCCcc
Confidence 2233 33444543 33322 23677888877764
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.6e-05 Score=68.76 Aligned_cols=137 Identities=14% Similarity=0.066 Sum_probs=90.1
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhh
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 625 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 625 (729)
|..-..+|..+.++..+.. -++.+.|++||.|+.+++.++. ....++++++.+|.---... .
T Consensus 38 w~~P~~~dWi~~l~~~v~a---~~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~-----~--------- 100 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNA---AEGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE-----I--------- 100 (181)
T ss_pred CCCCCHHHHHHHHHHHHhc---cCCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc-----c---------
Confidence 4444577777776655554 2455999999999999999998 44478999999885311100 0
Q ss_pred cCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC--CcccHHHHHHHH
Q 004816 626 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR--KAENIKFTLEQQ 703 (729)
Q Consensus 626 ~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~--~~~~~~~~~~~~ 703 (729)
........+|+. ..+..-|.++++..+|+.|++++++.+++++.. .++....+||... .-..+.+.+..+
T Consensus 101 --~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHiN~~sG~g~wpeg~~~l 172 (181)
T COG3545 101 --RPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHINAESGFGPWPEGYALL 172 (181)
T ss_pred --chhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheecccccccchhhcCCCcHHHHHHH
Confidence 011111222222 223346899999999999999999999999876 6888888999532 223444555555
Q ss_pred HHHHH
Q 004816 704 MVFFA 708 (729)
Q Consensus 704 ~~fl~ 708 (729)
.+|+.
T Consensus 173 ~~~~s 177 (181)
T COG3545 173 AQLLS 177 (181)
T ss_pred HHHhh
Confidence 55543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0002 Score=71.75 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=95.3
Q ss_pred ceEEEECCEEEEEE--CCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 148 GAFRIFGDTVIFSN--YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 148 ~~~~~~~~~i~~~~--~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.+++.+++.+++.. .....||+....+ ..+.+... ..+..|+|+++|..+++..... ...+++
T Consensus 29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~~~---~~~~~~~g-----~~l~~PS~d~~g~~W~v~~~~~-------~~~~~~ 93 (253)
T PF10647_consen 29 PAVSPDGSRVAAVSEGDGGRSLYVGPAGG---PVRPVLTG-----GSLTRPSWDPDGWVWTVDDGSG-------GVRVVR 93 (253)
T ss_pred eEECCCCCeEEEEEEcCCCCEEEEEcCCC---cceeeccC-----CccccccccCCCCEEEEEcCCC-------ceEEEE
Confidence 34555677888887 5556899998763 44444332 3678899999977544433222 122222
Q ss_pred EEcCCCceEE--eee-CCC-eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC--CCCe----eeeEEecCCCCC
Q 004816 226 IALNGQNIQV--LVS-GSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDV----YKRVCVAGFDPT 295 (729)
Q Consensus 226 ~dl~~g~~~~--lt~-~~~-~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~--~g~~----~~~~~~~~~~~~ 295 (729)
+..+++... +.. ... .+..+++||||.+||++..+.. ..+|++.-+.. +|.. ....+.....
T Consensus 94 -~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~-----~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~-- 165 (253)
T PF10647_consen 94 -DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG-----GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL-- 165 (253)
T ss_pred -ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCC-----CCeEEEEEEEeCCCCCcceeccceEeccccc--
Confidence 333343332 321 122 6778999999999999985442 36688877662 2311 1112222211
Q ss_pred ccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 296 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 296 ~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
..+..+.|.+|++|++......+.... .+..+++..+.+.
T Consensus 166 --~~v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l~ 205 (253)
T PF10647_consen 166 --SDVTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPLP 205 (253)
T ss_pred --CcceeeeecCCCEEEEEeCCCCCceeE-EEEccCCcccccC
Confidence 345678999999976666552222222 4666677666653
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=74.28 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=98.1
Q ss_pred hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 511 NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 511 ~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
...+..|+++|+.|+.+|-. +-|.. .+-......|+..++++..++. ..+++.|+|.|+|+-+.-.+..
T Consensus 19 ~~~a~~l~~~G~~VvGvdsl------~Yfw~---~rtP~~~a~Dl~~~i~~y~~~w--~~~~vvLiGYSFGADvlP~~~n 87 (192)
T PF06057_consen 19 KQIAEALAKQGVPVVGVDSL------RYFWS---ERTPEQTAADLARIIRHYRARW--GRKRVVLIGYSFGADVLPFIYN 87 (192)
T ss_pred HHHHHHHHHCCCeEEEechH------HHHhh---hCCHHHHHHHHHHHHHHHHHHh--CCceEEEEeecCCchhHHHHHh
Confidence 34788999999999999953 11111 1222344788999999888874 4689999999999977766654
Q ss_pred -CC----CcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCC-CCEEEEEeCCCCCCChHHH
Q 004816 591 -FR----DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQA 664 (729)
Q Consensus 591 -~~----~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~ 664 (729)
-| .+++.++++.+-.... |+.+. ..+++....-...++...+.++. .|++.|+|++|.-..
T Consensus 88 rLp~~~r~~v~~v~Ll~p~~~~d--------Feihv-~~wlg~~~~~~~~~~~pei~~l~~~~v~CiyG~~E~d~~---- 154 (192)
T PF06057_consen 88 RLPAALRARVAQVVLLSPSTTAD--------FEIHV-SGWLGMGGDDAAYPVIPEIAKLPPAPVQCIYGEDEDDSL---- 154 (192)
T ss_pred hCCHHHHhheeEEEEeccCCcce--------EEEEh-hhhcCCCCCcccCCchHHHHhCCCCeEEEEEcCCCCCCc----
Confidence 33 3677777777643211 00000 11111111111123444556666 489999998875321
Q ss_pred HHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 665 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 665 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
...++. ..++.+..|| ||.|.. +-....+.|++-++
T Consensus 155 ---cp~l~~--~~~~~i~lpG-gHHfd~--dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 155 ---CPSLRQ--PGVEVIALPG-GHHFDG--DYDALAKRILDALK 190 (192)
T ss_pred ---CccccC--CCcEEEEcCC-CcCCCC--CHHHHHHHHHHHHh
Confidence 122333 3568999998 555653 33445555555443
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0012 Score=65.74 Aligned_cols=247 Identities=12% Similarity=0.049 Sum_probs=134.5
Q ss_pred eEEEE-CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 149 AFRIF-GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 149 ~~~~~-~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
+..++ ++.++.+.+.+|.|.++..+++ +....|... .....-..|.|-+..|++-..+ ..||.+.
T Consensus 111 ~~~FshdgtlLATGdmsG~v~v~~~stg-~~~~~~~~e----~~dieWl~WHp~a~illAG~~D---------GsvWmw~ 176 (399)
T KOG0296|consen 111 CCSFSHDGTLLATGDMSGKVLVFKVSTG-GEQWKLDQE----VEDIEWLKWHPRAHILLAGSTD---------GSVWMWQ 176 (399)
T ss_pred EEEEccCceEEEecCCCccEEEEEcccC-ceEEEeecc----cCceEEEEecccccEEEeecCC---------CcEEEEE
Confidence 33444 3356667777889999998873 334444422 2334556899988877666543 4699999
Q ss_pred cCCCceEEeeeCCC-eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 228 LNGQNIQVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 228 l~~g~~~~lt~~~~-~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
+.++...++..|.. ..+.=.|.||||+|+-.. + ...|.++++. +|.. .......+ . .-......+
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-~-------dgti~~Wn~k-tg~p--~~~~~~~e-~--~~~~~~~~~ 242 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY-D-------DGTIIVWNPK-TGQP--LHKITQAE-G--LELPCISLN 242 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCCceEEEEe-c-------CceEEEEecC-CCce--eEEecccc-c--CcCCccccc
Confidence 98866666666543 233347999999997554 2 3458899998 6753 22222221 0 222344556
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
.+|.+++..+. .+ ..+.++..+|+.............+.-......+.+++.- ..=.|.....-+|.. ..+|+.
T Consensus 243 ~~~~~~~~g~~-e~--~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s-s~lpL~A~G~vdG~i--~iyD~a 316 (399)
T KOG0296|consen 243 LAGSTLTKGNS-EG--VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS-SKLPLAACGSVDGTI--AIYDLA 316 (399)
T ss_pred cccceeEeccC-Cc--cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc-cccchhhcccccceE--EEEecc
Confidence 66665555554 33 3444555566655544321000001000011111221100 111133333345554 445777
Q ss_pred CCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 387 GHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 387 ~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
...+|.+-.....|..+ ... ...++.+.. ...++.+|..+|..
T Consensus 317 ~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~---~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 317 ASTLRHICEHEDGVTKLKWLN-TDYLLTACA---NGKVRQWDARTGQL 360 (399)
T ss_pred cchhheeccCCCceEEEEEcC-cchheeecc---CceEEeeeccccce
Confidence 77777777777778777 433 333333332 24678888777764
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-05 Score=77.09 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=106.3
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecce-----------ecCCCCE-----------
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGI-----------FDPRFNR----------- 204 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~-----------~SPdG~~----------- 204 (729)
..+..+-|+.++|+...+..|-+|+...| .-.+.|... ...++..+ |.|-|++
T Consensus 250 VTCvrwGG~gliySgS~DrtIkvw~a~dG-~~~r~lkGH----ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 250 VTCVRWGGEGLIYSGSQDRTIKVWRALDG-KLCRELKGH----AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred eEEEEEcCCceEEecCCCceEEEEEccch-hHHHhhccc----chheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 34555556788898888888888887652 233444433 22333333 3344443
Q ss_pred --------------EEEEEeccCCCCCCcceEEEEEEcCC-C-ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 205 --------------YVTVREDRRQDALNSTTEIVAIALNG-Q-NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 205 --------------l~~~~~~~~~~~~~~~~~l~~~dl~~-g-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
++-.+++ ..||+++..- . .+.+++....-.+...|||||++||-.++|.+
T Consensus 325 l~rY~~~~~~~~erlVSgsDd---------~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS----- 390 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDD---------FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS----- 390 (480)
T ss_pred HHHHHHhhccCcceeEEecCC---------ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-----
Confidence 3333322 4688887643 2 23456666667788999999999998886643
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeec-cCccccCC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRP 347 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~ 347 (729)
|.+++-. +|+. +..+.++- ..+..++||.|.+|++.... . ..|-+++..+.+...=.+ ...++...
T Consensus 391 ---VkLW~g~-tGk~--lasfRGHv----~~VYqvawsaDsRLlVS~Sk-D--sTLKvw~V~tkKl~~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 391 ---VKLWDGR-TGKF--LASFRGHV----AAVYQVAWSADSRLLVSGSK-D--STLKVWDVRTKKLKQDLPGHADEVFAV 457 (480)
T ss_pred ---eeeeeCC-Ccch--hhhhhhcc----ceeEEEEeccCccEEEEcCC-C--ceEEEEEeeeeeecccCCCCCceEEEE
Confidence 5555555 6765 55666665 66788999999997766544 2 445566666666544332 33455556
Q ss_pred cccc
Q 004816 348 LWVF 351 (729)
Q Consensus 348 ~w~~ 351 (729)
.|++
T Consensus 458 Dwsp 461 (480)
T KOG0271|consen 458 DWSP 461 (480)
T ss_pred EecC
Confidence 6776
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0016 Score=63.87 Aligned_cols=249 Identities=14% Similarity=0.068 Sum_probs=134.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCc--eEEEECCEEEEEEC-CC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG--AFRIFGDTVIFSNY-KD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~-~~ 164 (729)
..+.++.+++ |..+.-.. ++...+||-...+ .....+... .||.. .|.-....++..+. .+
T Consensus 15 ~~i~sl~fs~~G~~litss----~dDsl~LYd~~~g---~~~~ti~sk--------kyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSS----EDDSLRLYDSLSG---KQVKTINSK--------KYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecCCCCEEEEec----CCCeEEEEEcCCC---ceeeEeecc--------cccccEEEEecCCceEEEccCCCC
Confidence 4677889997 55554422 3445566654333 333333221 24443 33333445555544 23
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
..|-.+++.++ +-.|-...+ ..++...+.||-+...+-.+.+ ..|.++|+...+.+-+..-.. ..
T Consensus 80 ~tIryLsl~dN-kylRYF~GH----~~~V~sL~~sP~~d~FlS~S~D---------~tvrLWDlR~~~cqg~l~~~~-~p 144 (311)
T KOG1446|consen 80 DTIRYLSLHDN-KYLRYFPGH----KKRVNSLSVSPKDDTFLSSSLD---------KTVRLWDLRVKKCQGLLNLSG-RP 144 (311)
T ss_pred CceEEEEeecC-ceEEEcCCC----CceEEEEEecCCCCeEEecccC---------CeEEeeEecCCCCceEEecCC-Cc
Confidence 47888888762 334444444 6788999999988754333332 358888988665554433221 12
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC--CCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCc
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF 321 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~--~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~ 321 (729)
-++++|.|=.+|... + ...|.++|+.. .|......+..+.. .....+.|||||+ ++..++.
T Consensus 145 i~AfDp~GLifA~~~--~------~~~IkLyD~Rs~dkgPF~tf~i~~~~~----~ew~~l~FS~dGK~iLlsT~~---- 208 (311)
T KOG1446|consen 145 IAAFDPEGLIFALAN--G------SELIKLYDLRSFDKGPFTTFSITDNDE----AEWTDLEFSPDGKSILLSTNA---- 208 (311)
T ss_pred ceeECCCCcEEEEec--C------CCeEEEEEecccCCCCceeEccCCCCc----cceeeeEEcCCCCEEEEEeCC----
Confidence 358999996444332 2 12588888862 23222222222222 2235789999999 5555443
Q ss_pred eEEEEEEcCCCeEEEeecc-CccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeecc
Q 004816 322 WNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~ 395 (729)
..++++|.=+|....-..+ ......+ -+..|.| |+ .+++....+|..++|.+ ++|.......
T Consensus 209 s~~~~lDAf~G~~~~tfs~~~~~~~~~------~~a~ftP---ds-~Fvl~gs~dg~i~vw~~--~tg~~v~~~~ 271 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTFSGYPNAGNLP------LSATFTP---DS-KFVLSGSDDGTIHVWNL--ETGKKVAVLR 271 (311)
T ss_pred CcEEEEEccCCcEeeeEeeccCCCCcc------eeEEECC---CC-cEEEEecCCCcEEEEEc--CCCcEeeEec
Confidence 3477778767764432221 1111111 1223442 44 56677777898888865 5665544433
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=8e-05 Score=71.40 Aligned_cols=151 Identities=12% Similarity=0.061 Sum_probs=100.0
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
++..+++...++.|.+||+.+ ++.++...+. ...+...++|||.++|+--+.+ ..|-+++.-++-.
T Consensus 74 dg~~alS~swD~~lrlWDl~~--g~~t~~f~GH---~~dVlsva~s~dn~qivSGSrD---------kTiklwnt~g~ck 139 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLAT--GESTRRFVGH---TKDVLSVAFSTDNRQIVSGSRD---------KTIKLWNTLGVCK 139 (315)
T ss_pred CCceEEeccccceEEEEEecC--CcEEEEEEec---CCceEEEEecCCCceeecCCCc---------ceeeeeeecccEE
Confidence 335667777788999999998 6555444331 4667889999999998655443 3477778876655
Q ss_pred EEeeeC--CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 234 QVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 234 ~~lt~~--~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
-.+..+ .++.+-.+|||...-...++... ...+-++|+. +-++ ...+.++. .++..+..||||.+
T Consensus 140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~------DktvKvWnl~-~~~l--~~~~~gh~----~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPNESNPIIVSASW------DKTVKVWNLR-NCQL--RTTFIGHS----GYVNTVTVSPDGSL 206 (315)
T ss_pred EEEecCCCcCcEEEEEEcCCCCCcEEEEccC------CceEEEEccC-Ccch--hhcccccc----ccEEEEEECCCCCE
Confidence 555554 56788899999854444444221 2348888887 5444 44556665 78889999999985
Q ss_pred EEEEecCCCceEEEEEEcCCCeE
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
...... . ..++++|++.++.
T Consensus 207 casGgk-d--g~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 207 CASGGK-D--GEAMLWDLNEGKN 226 (315)
T ss_pred EecCCC-C--ceEEEEEccCCce
Confidence 433322 3 3566667766654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00037 Score=69.27 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=61.5
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE-c
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA-L 228 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d-l 228 (729)
|..++..++=.+..+..|.+||+++ +...+|.... ...+.-..|||||..+++.+-+. ...||-.. .
T Consensus 203 wn~dgt~l~tAS~gsssi~iWdpdt--g~~~pL~~~g---lgg~slLkwSPdgd~lfaAt~da-------vfrlw~e~q~ 270 (445)
T KOG2139|consen 203 WNEDGTILVTASFGSSSIMIWDPDT--GQKIPLIPKG---LGGFSLLKWSPDGDVLFAATCDA-------VFRLWQENQS 270 (445)
T ss_pred EcCCCCEEeecccCcceEEEEcCCC--CCcccccccC---CCceeeEEEcCCCCEEEEecccc-------eeeeehhccc
Confidence 3334445544455566899999998 7666666321 23456789999999877765543 12333111 1
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHH 262 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~ 262 (729)
-+. ++.++ +.+.....+|||+|+.|.|+....
T Consensus 271 wt~-erw~l-gsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 271 WTK-ERWIL-GSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred cee-cceec-cCCceeeeeecCCCCEEEEEEcCC
Confidence 112 22222 344778899999999999987544
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.6e-05 Score=74.00 Aligned_cols=181 Identities=17% Similarity=0.206 Sum_probs=106.9
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-----cchhhhHHHhhCCcEEEEe
Q 004816 453 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----ILNLSIQYWTSRGWAFVDV 527 (729)
Q Consensus 453 ~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-----~~~~~~~~la~~G~~v~~~ 527 (729)
........+.++. |+..+.+....-++ .+....||+.-|........ ....+.......|.+|+.+
T Consensus 107 ~~~~~~kRv~Iq~--D~~~IDt~~I~~~~-------a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~f 177 (365)
T PF05677_consen 107 DEVSSVKRVPIQY--DGVKIDTMAIHQPE-------AKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVF 177 (365)
T ss_pred ccccceeeEEEee--CCEEEEEEEeeCCC-------CCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEE
Confidence 3444567777877 89998877765322 23445788887753222111 1123444555679999999
Q ss_pred cCCCCCCC-chhHHHhhccCCCcccHHHHHHHHHHHHhCC-CCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEE-E
Q 004816 528 NYGGSTGY-GREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRLCITGGSAGGYTTLAALA-F----RDTFKAG-A 599 (729)
Q Consensus 528 d~rGs~g~-g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~----~~~~~a~-v 599 (729)
||||-+-+ |..-.+ ..+.|..++++||+++. .+.+++|++.|||.||.++..++. + .+-++-. |
T Consensus 178 NYpGVg~S~G~~s~~--------dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~i 249 (365)
T PF05677_consen 178 NYPGVGSSTGPPSRK--------DLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLI 249 (365)
T ss_pred CCCccccCCCCCCHH--------HHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEE
Confidence 99985432 222111 23788999999999753 467899999999999999887765 2 2234423 3
Q ss_pred EeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCC
Q 004816 600 SLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLE 655 (729)
Q Consensus 600 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~ 655 (729)
-.-++.++.......-.....++-.+.+ +..+.....+++.||=+++|+.+
T Consensus 250 kDRsfssl~~vas~~~~~~~~~l~~l~g-----WnidS~K~s~~l~cpeIii~~~d 300 (365)
T PF05677_consen 250 KDRSFSSLAAVASQFFGPIGKLLIKLLG-----WNIDSAKNSEKLQCPEIIIYGVD 300 (365)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHHHHhc-----cCCCchhhhccCCCCeEEEeccc
Confidence 3345555544332211111111111111 12234445567789999998864
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.8e-05 Score=77.03 Aligned_cols=207 Identities=14% Similarity=0.082 Sum_probs=113.5
Q ss_pred EEEEEcCCCCCCccccchhhhHHHh-hCCcE----EEEecCCCCCCCchhHHHh----h---ccCCCc-----ccHHHHH
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWT-SRGWA----FVDVNYGGSTGYGREFRER----L---LGRWGI-----VDVNDCC 556 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la-~~G~~----v~~~d~rGs~g~g~~~~~~----~---~~~~~~-----~~~~D~~ 556 (729)
..|++||. +.....+..+++.+. ..|.+ ++.++--|.--+...+... . .-.... ....=+.
T Consensus 13 PTifihG~--~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl~ 90 (255)
T PF06028_consen 13 PTIFIHGY--GGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWLK 90 (255)
T ss_dssp EEEEE--T--TGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHHH
T ss_pred cEEEECCC--CCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 46778997 444677888888887 66643 4555544422111111110 0 001111 1244567
Q ss_pred HHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-----CCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChh
Q 004816 557 SCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-----RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEK 630 (729)
Q Consensus 557 ~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-----~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 630 (729)
.++.+|.++..+ +++-++||||||..++.++. + -+.+...|.+++.++-.................+....+
T Consensus 91 ~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~~~gp~~~~~ 168 (255)
T PF06028_consen 91 KVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLNKNGPKSMTP 168 (255)
T ss_dssp HHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CSTT-BSS--H
T ss_pred HHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhcccCCcccCH
Confidence 888899888665 69999999999999998875 2 236788888888766432211000000000000000112
Q ss_pred hhhhcCcc--cccCCCCCCEEEEEeC------CCCCCChHHHHHHHHHHHhCCCCEEEEEECC--CCcccCCcccHHHHH
Q 004816 631 DYYEKSPI--NFVDKFSCPIILFQGL------EDKVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKAENIKFTL 700 (729)
Q Consensus 631 ~~~~~sp~--~~~~~i~~PvL~i~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~~~~~~~~ 700 (729)
.|...-.. .++ .-...+|-|.|. .|..||...++.+.-.++......+-+++.| +.|.-. .++ .+..
T Consensus 169 ~y~~l~~~~~~~~-p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~L-heN-~~V~ 245 (255)
T PF06028_consen 169 MYQDLLKNRRKNF-PKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQL-HEN-PQVD 245 (255)
T ss_dssp HHHHHHHTHGGGS-TTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGG-GCC-HHHH
T ss_pred HHHHHHHHHHhhC-CCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccC-CCC-HHHH
Confidence 22221111 011 113569999998 8899999999999888888777777778876 478632 233 3555
Q ss_pred HHHHHHH
Q 004816 701 EQQMVFF 707 (729)
Q Consensus 701 ~~~~~fl 707 (729)
+.|.+||
T Consensus 246 ~~I~~FL 252 (255)
T PF06028_consen 246 KLIIQFL 252 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6677776
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0002 Score=70.06 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=102.5
Q ss_pred CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC-c
Q 004816 88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ-R 166 (729)
Q Consensus 88 ~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 166 (729)
.+.+..+..+|.+..|-... .++...||-.... +-+-+.... +....+.+++.++|.....+ .
T Consensus 100 ~~~V~sL~~sP~~d~FlS~S---~D~tvrLWDlR~~---~cqg~l~~~----------~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 100 KKRVNSLSVSPKDDTFLSSS---LDKTVRLWDLRVK---KCQGLLNLS----------GRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred CceEEEEEecCCCCeEEecc---cCCeEEeeEecCC---CCceEEecC----------CCcceeECCCCcEEEEecCCCe
Confidence 56677888888334444332 3456667765433 222222111 12233444445555544443 7
Q ss_pred EEEEeCCC-CCCCCe--ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC---
Q 004816 167 LYKHSIDS-KDSSPL--PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS--- 240 (729)
Q Consensus 167 l~~~d~~~-~~~~~~--~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~--- 240 (729)
|.++|+.. +.|.-+ .++.. ...+..+..|||||+.|+..... +.++++|.=.|....-..+.
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~---~~~ew~~l~FS~dGK~iLlsT~~---------s~~~~lDAf~G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDN---DEAEWTDLEFSPDGKSILLSTNA---------SFIYLLDAFDGTVKSTFSGYPNA 231 (311)
T ss_pred EEEEEecccCCCCceeEccCCC---CccceeeeEEcCCCCEEEEEeCC---------CcEEEEEccCCcEeeeEeeccCC
Confidence 88999864 102212 22221 24567899999999998776543 56899998888765433222
Q ss_pred -CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 241 -DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 241 -~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
......+|+|||+.|.-.+ ++..|++++++ +|.. +..+.+.. . ....-+.|.|-
T Consensus 232 ~~~~~~a~ftPds~Fvl~gs--------~dg~i~vw~~~-tg~~--v~~~~~~~-~--~~~~~~~fnP~ 286 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSGS--------DDGTIHVWNLE-TGKK--VAVLRGPN-G--GPVSCVRFNPR 286 (311)
T ss_pred CCcceeEEECCCCcEEEEec--------CCCcEEEEEcC-CCcE--eeEecCCC-C--CCccccccCCc
Confidence 1224678999999876444 23559999998 7764 33333321 0 33455668884
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0011 Score=66.52 Aligned_cols=215 Identities=15% Similarity=0.105 Sum_probs=120.8
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-eeeCC--CeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVSGS--DFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~~~--~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
|--+++.+|+...++++....+ .-++++|..+|+..+ +.... -++..-.|||||++|+.+..+... .
T Consensus 6 RgH~~a~~p~~~~avafaRRPG-------~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~---g 75 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG-------TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET---G 75 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC-------cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC---C
Confidence 4456788995444444443332 468899999998764 44433 356678999999999877755433 4
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec------CCCc---------eEEEEEEcCCC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR------KNGF---------WNLHKWIESNN 332 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~------~~g~---------~~l~~~d~~~g 332 (729)
...|-++|+. ....++.-+.... .....+.|.|||+ |++ .+- ..|. .+|..+|..+|
T Consensus 76 ~G~IgVyd~~--~~~~ri~E~~s~G----IGPHel~l~pDG~tLvV-ANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 76 RGVIGVYDAA--RGYRRIGEFPSHG----IGPHELLLMPDGETLVV-ANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred cEEEEEEECc--CCcEEEeEecCCC----cChhhEEEcCCCCEEEE-EcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 5679999987 3333344444443 6678899999998 554 322 0121 34777887888
Q ss_pred eEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe-----EEEEEEECCCCceEeeccCC-------cce
Q 004816 333 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR-----SYLGILDDFGHSLSLLDIPF-------TDI 400 (729)
Q Consensus 333 ~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~-----~~ly~~d~~~g~~~~lt~~~-------~~v 400 (729)
+...-.....+. -......+.+. .++.+++.....|. .-|++.. .++..+.+..+. ..+
T Consensus 149 ~ll~q~~Lp~~~----~~lSiRHLa~~----~~G~V~~a~Q~qg~~~~~~PLva~~~-~g~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 149 ALLEQVELPPDL----HQLSIRHLAVD----GDGTVAFAMQYQGDPGDAPPLVALHR-RGGALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred ceeeeeecCccc----cccceeeEEec----CCCcEEEEEecCCCCCccCCeEEEEc-CCCcceeccCChHHHHhhCCce
Confidence 754322111000 01122333443 44556555554443 2344444 344455555432 235
Q ss_pred EEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcce
Q 004816 401 DNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 434 (729)
Q Consensus 401 ~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~ 434 (729)
.++ ...++.+++.++... ..+.++|.++++..
T Consensus 220 gSIa~~~~g~~ia~tsPrG--g~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRG--GRVAVWDAATGRLL 252 (305)
T ss_pred EEEEEeCCCCEEEEECCCC--CEEEEEECCCCCEe
Confidence 566 444555555555433 23556688888753
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00048 Score=74.69 Aligned_cols=230 Identities=12% Similarity=0.077 Sum_probs=142.3
Q ss_pred ECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 153 ~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
+|+.|+|-...-|+|-+|+..+ +.-.+-.. +...+......||||+.|+.-.++. .+-++|..+|-
T Consensus 318 tGDWiA~g~~klgQLlVweWqs---EsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDg---------KVKvWn~~Sgf 383 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQS---ESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDG---------KVKVWNTQSGF 383 (893)
T ss_pred cCCEEEEcCCccceEEEEEeec---cceeeecc--ccccceeeEEECCCCcEEEeccCCC---------cEEEEeccCce
Confidence 3777888766667899998875 22222221 0135567888999999988776654 47777887764
Q ss_pred eE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 233 IQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 233 ~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
.. ..++.....++..|+.+|+.|.-.+.| ..+..+|+. ... +-+.+....+ .....++-.|-|.|
T Consensus 384 C~vTFteHts~Vt~v~f~~~g~~llssSLD--------GtVRAwDlk-RYr--NfRTft~P~p---~QfscvavD~sGel 449 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLD--------GTVRAWDLK-RYR--NFRTFTSPEP---IQFSCVAVDPSGEL 449 (893)
T ss_pred EEEEeccCCCceEEEEEEecCCEEEEeecC--------CeEEeeeec-ccc--eeeeecCCCc---eeeeEEEEcCCCCE
Confidence 43 344455567889999999977655532 347778887 332 2344433321 33445556666877
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
++... .+...|++++.++|+...+.. .++.+.. +.|.+ .+. ++++...|...++|-+=-..+..
T Consensus 450 V~AG~--~d~F~IfvWS~qTGqllDiLsGHEgPVs~---------l~f~~---~~~-~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 450 VCAGA--QDSFEIFVWSVQTGQLLDILSGHEGPVSG---------LSFSP---DGS-LLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred EEeec--cceEEEEEEEeecCeeeehhcCCCCccee---------eEEcc---ccC-eEEeccccceEEEEEeeccCcee
Confidence 76654 367899999999999887763 3322222 23332 444 56666677888888765555666
Q ss_pred EeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 391 SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 391 ~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
+.|.-. .++..+ .++++.+.+.+.+ ++|-.+|.+.
T Consensus 515 Etl~i~-sdvl~vsfrPdG~elaVaTld----gqItf~d~~~ 551 (893)
T KOG0291|consen 515 ETLEIR-SDVLAVSFRPDGKELAVATLD----GQITFFDIKE 551 (893)
T ss_pred eeEeec-cceeEEEEcCCCCeEEEEEec----ceEEEEEhhh
Confidence 666542 234444 5666666665543 2444444443
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.3e-05 Score=74.75 Aligned_cols=194 Identities=16% Similarity=0.232 Sum_probs=110.2
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHh---hCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHH----HHHHHHHHh
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWT---SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC----CSCATFLVG 564 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la---~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~----~~~~~~l~~ 564 (729)
.++|+++.|.|+.. ..|..+...|. ...|.|+++.+.|.......-... .+......+|. .+.++.++.
T Consensus 2 ~~li~~IPGNPGlv--~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~--~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGLV--EFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFS--PNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCChH--HHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccccc--CCCCccCHHHHHHHHHHHHHHHhh
Confidence 36899999988753 34555555554 348999999998754432220000 11111223333 334444444
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHh-CC---CcceEEEEeccccC-hhH------Hhh---h-----------------
Q 004816 565 SGKADEKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVAD-LSM------LRA---E----------------- 613 (729)
Q Consensus 565 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~~---~~~~a~v~~~~~~d-~~~------~~~---~----------------- 613 (729)
.......++.++|||.|+|+++.++. .+ .+++.++.+.|... +.. +.. .
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~Sp~G~~l~~~~~~~~~~~~~~~~~~~l~~~ 157 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKSPNGRRLTPLLFSPPPLVWLASFLSFLLSL 157 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCCchhHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 32224578999999999999999998 66 68889998887531 110 000 0
Q ss_pred cchhhhhh-hhhhcC--------------Ch-----------hhhhhc--Cc-ccccCCC---CCCEEEEEeCCCCCCCh
Q 004816 614 THKFESRY-IDNLVG--------------SE-----------KDYYEK--SP-INFVDKF---SCPIILFQGLEDKVVPP 661 (729)
Q Consensus 614 ~~~~~~~~-~~~~~~--------------~~-----------~~~~~~--sp-~~~~~~i---~~PvL~i~G~~D~~vp~ 661 (729)
.+.....+ .....+ ++ +.+..- .. ....+.. ...+.++.|.+|.-||.
T Consensus 158 lP~~~~~~lv~~~~~~~~~~~~~t~~~l~~~~~v~qaL~Ma~~Em~~I~~~d~~~~~~~~~~~~~kl~f~fg~~D~Wvp~ 237 (266)
T PF10230_consen 158 LPESVLRWLVRWVMGFPPPAVEATTKFLLSPRVVRQALYMARDEMREIREDDNDELIKHHNENGDKLWFYFGQNDHWVPN 237 (266)
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCcchHHHHHHhccCCCEEEEEEeCCCCCCCH
Confidence 00000000 000001 00 001000 00 0111112 46789999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 662 DQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 662 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
+..+++.+.+......+.+.+ ++-.|.|
T Consensus 238 ~~~~~l~~~~~~~~~~~~v~~-~~i~HaF 265 (266)
T PF10230_consen 238 ETRDELIERYPGHEPDVVVDE-EGIPHAF 265 (266)
T ss_pred HHHHHHHHHcCCCCCeEEEec-CCCCCCC
Confidence 999999888886545566666 7888876
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.1e-05 Score=79.32 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=94.2
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCC-ch
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY-GR 537 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~-g~ 537 (729)
+...+.+. ||.++...+....... .+...-+|+++.|..+.- .- ..+.--++.||.|+-.|.+|-.|+ |.
T Consensus 215 ~R~kiks~-dgneiDtmF~d~r~n~----~~ngq~LvIC~EGNAGFY-Ev---G~m~tP~~lgYsvLGwNhPGFagSTG~ 285 (517)
T KOG1553|consen 215 QRLKIKSS-DGNEIDTMFLDGRPNQ----SGNGQDLVICFEGNAGFY-EV---GVMNTPAQLGYSVLGWNHPGFAGSTGL 285 (517)
T ss_pred eEEEEeec-CCcchhheeecCCCCC----CCCCceEEEEecCCccce-Ee---eeecChHHhCceeeccCCCCccccCCC
Confidence 56777777 8988887776543211 123345788887752211 11 122333677999999999876553 22
Q ss_pred hHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh
Q 004816 538 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 611 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~ 611 (729)
.+ ..++..-+.+++++.++.-....+.|++.|+|-||+.+.+++. +|+ ++++|+.+.+-|+..+.
T Consensus 286 P~--------p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLA 351 (517)
T KOG1553|consen 286 PY--------PVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLA 351 (517)
T ss_pred CC--------cccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHH
Confidence 21 2244566777888888886677899999999999999999998 886 89999999888776543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.7e-05 Score=69.16 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=83.3
Q ss_pred ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 190 ~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
..|.+|...+|||++...++.+.+..-..-...||++-+ ++++..+...-+..++..|+-|-|+.+|+....
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln------- 179 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLN------- 179 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEccCc-------
Confidence 478899999999999777776655433233466777554 577777776666778899999999999987432
Q ss_pred cEE--EEEEecCCCCeeeeEEecCCC---CCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE
Q 004816 270 AEL--WVGYISENGDVYKRVCVAGFD---PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 270 ~~l--~~~d~~~~g~~~~~~~~~~~~---~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
-++ |-+|.. +|.+.+++.+-+.. +.-..-....+...+|.|+...-. ...++++|+.+|+..
T Consensus 180 ~~V~a~dyd~~-tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---g~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 180 YEVDAYDYDCP-TGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---GGTVQKVDPTTGKIL 246 (310)
T ss_pred eEEeeeecCCC-cccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec---CcEEEEECCCCCcEE
Confidence 335 666677 77665443322211 000011223444444444444332 246889999998754
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00032 Score=66.30 Aligned_cols=186 Identities=10% Similarity=0.058 Sum_probs=114.5
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-e
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-I 233 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-~ 233 (729)
++-.|+..++|.+-+||+.. -...++-.. ...++.....|+-..|+ +.+.. .+|+++|+.... .
T Consensus 95 grWMyTgseDgt~kIWdlR~--~~~qR~~~~----~spVn~vvlhpnQteLi-s~dqs--------g~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRS--LSCQRNYQH----NSPVNTVVLHPNQTELI-SGDQS--------GNIRVWDLGENSCT 159 (311)
T ss_pred CeEEEecCCCceEEEEeccC--cccchhccC----CCCcceEEecCCcceEE-eecCC--------CcEEEEEccCCccc
Confidence 35667778889899999876 445555444 23467888999777654 43332 579999997653 3
Q ss_pred EEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC----eeeeEEecCCCCCccccccCceeCCC
Q 004816 234 QVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD----VYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 234 ~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~----~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
++|.+ ...+.......|||++|+-+. +....|++++- ++. +.++..+.... .++..-.+|||
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~n--------nkG~cyvW~l~-~~~~~s~l~P~~k~~ah~----~~il~C~lSPd 226 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAAN--------NKGNCYVWRLL-NHQTASELEPVHKFQAHN----GHILRCLLSPD 226 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEec--------CCccEEEEEcc-CCCccccceEhhheeccc----ceEEEEEECCC
Confidence 45554 445677889999999998655 23448888886 332 22333344444 66677889999
Q ss_pred CcEEEEEecCCCceEEEEEEcCCC-e-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 309 GELFFVTDRKNGFWNLHKWIESNN-E-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 309 G~l~~~~~~~~g~~~l~~~d~~~g-~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
++.+.++.. ...-.|| +.++- + .++|+... .-.| +..|. .++.++++.+.++..+||-+.
T Consensus 227 ~k~lat~ss-dktv~iw--n~~~~~kle~~l~gh~----rWvW-----dc~FS----~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 227 VKYLATCSS-DKTVKIW--NTDDFFKLELVLTGHQ----RWVW-----DCAFS----ADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred CcEEEeecC-CceEEEE--ecCCceeeEEEeecCC----ceEE-----eeeec----cCccEEEecCCCCceeecccc
Confidence 994434333 2334444 44443 2 23333222 1233 34555 445566777778888998654
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00016 Score=72.32 Aligned_cols=203 Identities=14% Similarity=0.069 Sum_probs=119.3
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|+||++ |.. +........+.+.+.+.|+.++.+-.+-. .-.... .....-+...++.+.+....+..+
T Consensus 1 plvvl~-gW~-gA~~~hl~KY~~~Y~~~g~~il~~~~~~~--------~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~ 68 (240)
T PF05705_consen 1 PLVVLL-GWM-GAKPKHLAKYSDLYQDPGFDILLVTSPPA--------DFFWPS--KRLAPAADKLLELLSDSQSASPPP 68 (240)
T ss_pred CEEEEE-eCC-CCCHHHHHHHHHHHHhcCCeEEEEeCCHH--------HHeeec--cchHHHHHHHHHHhhhhccCCCCC
Confidence 455554 543 33334455567777789999999876421 111110 011122233444554443333348
Q ss_pred EEEEEcChHHHHHHHHHh---C--------CCcceEEEEeccccChh------HHhhhcchhh-------hhhhhhh---
Q 004816 573 LCITGGSAGGYTTLAALA---F--------RDTFKAGASLYGVADLS------MLRAETHKFE-------SRYIDNL--- 625 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~---~--------~~~~~a~v~~~~~~d~~------~~~~~~~~~~-------~~~~~~~--- 625 (729)
|.+..+|.||...+..+. + -+++++.|..++..... .+........ .......
T Consensus 69 il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (240)
T PF05705_consen 69 ILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTYSSSARAFSAALPKSSPRWFVPLWPLLQFLLRL 148 (240)
T ss_pred EEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCccccccHHHHHHHHcCccchhhHHHHHHHHHHHHHH
Confidence 999999998877755432 1 12378888777653221 1111111110 0000000
Q ss_pred -------cC--C-hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCccc
Q 004816 626 -------VG--S-EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695 (729)
Q Consensus 626 -------~~--~-~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~ 695 (729)
.. + ...+............++|-|++.++.|.+++.++.+++++..++.|.+++.+.|++..|.-....+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~ 228 (240)
T PF05705_consen 149 SIISYFIFGYPDVQEYYRRALNDFANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKH 228 (240)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhhhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccC
Confidence 00 1 1111111111123345689999999999999999999999999999999999999999998777777
Q ss_pred HHHHHHHHHHHH
Q 004816 696 IKFTLEQQMVFF 707 (729)
Q Consensus 696 ~~~~~~~~~~fl 707 (729)
.+++.+.+.+|+
T Consensus 229 p~~Y~~~v~~fw 240 (240)
T PF05705_consen 229 PDRYWRAVDEFW 240 (240)
T ss_pred HHHHHHHHHhhC
Confidence 888888887774
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=75.59 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=121.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC-------cccCCCCCcccccccccCCceEEEECCEEEEE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP-------SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS 160 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (729)
-.++.++||| |+.+..+..... ..| ++.+|- +. +-+.+ -.+...-+....-++|.+.....+.+
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aq----akl--~DRdG~-~~~e~~KGDQYI~D-m~nTKGHia~lt~g~whP~~k~~FlT 286 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQ----AKL--LDRDGF-EIVEFSKGDQYIRD-MYNTKGHIAELTCGCWHPDNKEEFLT 286 (641)
T ss_pred cccceeeecCCCCeEEEEecCcc----eeE--EccCCc-eeeeeeccchhhhh-hhccCCceeeeeccccccCcccceEE
Confidence 3457899999 888887765332 122 222210 10 01110 00112222233345677776667777
Q ss_pred ECCCCcEEEEeCCCCCCCCeecCCCC-CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE--Eee
Q 004816 161 NYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ--VLV 237 (729)
Q Consensus 161 ~~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~--~lt 237 (729)
...++.|-+|++.......+.+-... ++....+...+|+|||+.|+..+.+. .|-+++..+-..+ ...
T Consensus 287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---------SIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---------SIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---------ceeeeecCCcccccceEe
Confidence 77888888888764102222222211 11123346778999999988776653 3445555332111 111
Q ss_pred e----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 238 S----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 238 ~----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
. +....+...||+||++|+--+.+ ..|-++|+. .-+ ..+....+.... ..-...+||||.+|++
T Consensus 358 k~AH~~g~~Itsi~FS~dg~~LlSRg~D--------~tLKvWDLr-q~k-kpL~~~tgL~t~--~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSYDGNYLLSRGFD--------DTLKVWDLR-QFK-KPLNVRTGLPTP--FPGTDCCFSPDDKLIL 425 (641)
T ss_pred eeccCCCCceeEEEeccccchhhhccCC--------Cceeeeecc-ccc-cchhhhcCCCcc--CCCCccccCCCceEEE
Confidence 1 22346778999999998754432 337788887 221 112111222100 1225678999999766
Q ss_pred EEecC-C--CceEEEEEEcCCCeE-EEeeccCccccCCcccc
Q 004816 314 VTDRK-N--GFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVF 351 (729)
Q Consensus 314 ~~~~~-~--g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~ 351 (729)
+.... + ....|+.+|..+-+. ..|.-....+..-.|.|
T Consensus 426 TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 426 TGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred ecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 54321 2 234688888766432 23321233333445655
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0007 Score=65.47 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=90.7
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
..++|...-.+-.+++|.++. .++..+....+ ...+...+|||||++|+.+.++.. . .+..|=++|... ...
T Consensus 81 ravafARrPGtf~~vfD~~~~-~~pv~~~s~~~--RHfyGHGvfs~dG~~LYATEndfd-~---~rGViGvYd~r~-~fq 152 (366)
T COG3490 81 RAVAFARRPGTFAMVFDPNGA-QEPVTLVSQEG--RHFYGHGVFSPDGRLLYATENDFD-P---NRGVIGVYDARE-GFQ 152 (366)
T ss_pred ceEEEEecCCceEEEECCCCC-cCcEEEecccC--ceeecccccCCCCcEEEeecCCCC-C---CCceEEEEeccc-ccc
Confidence 356666544456788999873 44555554421 245688899999998766654432 1 245666677653 233
Q ss_pred EeeeCCCeee---eeeeCCCCCeEEEEEe---cCCCC---CC--C--CcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 235 VLVSGSDFYA---FPRMDPRGERMAWIEW---HHPNM---PW--D--KAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 235 ~lt~~~~~~~---~~~~SPDG~~la~~~~---~~~~~---~~--~--~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
++-+-+.+-. ...|.+||+.|+.... .++.. +- + ...|.++|.. +|++-++..++..... .++.
T Consensus 153 rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a-tG~liekh~Lp~~l~~--lSiR 229 (366)
T COG3490 153 RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA-TGNLIEKHTLPASLRQ--LSIR 229 (366)
T ss_pred eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc-ccchhhhccCchhhhh--ccee
Confidence 3322111112 3589999999987653 12111 11 1 2346777765 6776444455533212 5777
Q ss_pred CceeCCCCcEEEEEecCCC
Q 004816 302 EPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g 320 (729)
.+...+||+++|-.+. +|
T Consensus 230 Hld~g~dgtvwfgcQy-~G 247 (366)
T COG3490 230 HLDIGRDGTVWFGCQY-RG 247 (366)
T ss_pred eeeeCCCCcEEEEEEe-eC
Confidence 8889999998887776 44
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.1e-05 Score=66.88 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=90.0
Q ss_pred EEEEcCCCCCCccccchhhhHHHhhCC--cEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 495 LVKSHGGPTSEARGILNLSIQYWTSRG--WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 495 vv~~hGg~~~~~~~~~~~~~~~la~~G--~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|+++||.-.+.....-..+.+++.+.+ ..+.++..+ .+...+.+-++-++++.. | +.
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~~~~~i~y~~p~l~-------------------h~p~~a~~ele~~i~~~~-~-~~ 60 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYSTPHLP-------------------HDPQQALKELEKAVQELG-D-ES 60 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhccccceeeecCCCC-------------------CCHHHHHHHHHHHHHHcC-C-CC
Confidence 899999743332222233445555443 223333332 123445555555555422 2 34
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-HHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCCCCCC-E
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-MLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFSCP-I 648 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~~P-v 648 (729)
++|+|.|.|||.|.+++. +. ++++ +++|..-.. .+.......+..|...-.- ........ -...+..++.| .
T Consensus 61 p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P~e~l~gylg~~en~ytg~~y~le~~hI~~l-~~~~~~~l~~p~~ 136 (191)
T COG3150 61 PLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRPYELLTGYLGRPENPYTGQEYVLESRHIATL-CVLQFRELNRPRC 136 (191)
T ss_pred ceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCchhhhhhhcCCCCCCCCcceEEeehhhHHHH-HHhhccccCCCcE
Confidence 999999999999999987 54 3443 344433221 1111111111011100000 00000000 01223344445 4
Q ss_pred EEEE-eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 649 ILFQ-GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 649 L~i~-G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
|++- -+.|.+.+..++.+.+.... ..+..|+.|.|.+ ....++.|..|..
T Consensus 137 ~~lL~qtgDEvLDyr~a~a~y~~~~-------~~V~dgg~H~F~~---f~~~l~~i~aF~g 187 (191)
T COG3150 137 LVLLSQTGDEVLDYRQAVAYYHPCY-------EIVWDGGDHKFKG---FSRHLQRIKAFKG 187 (191)
T ss_pred EEeecccccHHHHHHHHHHHhhhhh-------heeecCCCccccc---hHHhHHHHHHHhc
Confidence 4444 44488887777776666554 5577789999864 4577788888763
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0011 Score=70.16 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=89.9
Q ss_pred EEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 151 ~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
++++.. +|+..+++.|-++|+.+. ...+++..+ ......++||||++++...... .++.++|.++
T Consensus 45 s~Dgr~-~yv~~rdg~vsviD~~~~-~~v~~i~~G-----~~~~~i~~s~DG~~~~v~n~~~--------~~v~v~D~~t 109 (369)
T PF02239_consen 45 SPDGRY-LYVANRDGTVSVIDLATG-KVVATIKVG-----GNPRGIAVSPDGKYVYVANYEP--------GTVSVIDAET 109 (369)
T ss_dssp TT-SSE-EEEEETTSEEEEEETTSS-SEEEEEE-S-----SEEEEEEE--TTTEEEEEEEET--------TEEEEEETTT
T ss_pred cCCCCE-EEEEcCCCeEEEEECCcc-cEEEEEecC-----CCcceEEEcCCCCEEEEEecCC--------CceeEecccc
Confidence 334444 444557889999999872 333445443 3446788999999876554432 5799999988
Q ss_pred CceEEeee-C-------CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccC
Q 004816 231 QNIQVLVS-G-------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 302 (729)
Q Consensus 231 g~~~~lt~-~-------~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 302 (729)
.++....+ + .....+..-||+....++.- . +..+||++|.. +.+....+.+.- . ..+..
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l-k------d~~~I~vVdy~-d~~~~~~~~i~~-g----~~~~D 176 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL-K------DTGEIWVVDYS-DPKNLKVTTIKV-G----RFPHD 176 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE-T------TTTEEEEEETT-TSSCEEEEEEE-------TTEEE
T ss_pred ccceeecccccccccccCCCceeEEecCCCCEEEEEE-c------cCCeEEEEEec-cccccceeeecc-c----ccccc
Confidence 77644322 1 11233445577777544443 2 23569999987 443212222222 1 34567
Q ss_pred ceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 303 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 303 ~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
..|+|||+.++.+.. +...|..+|.++++...+.
T Consensus 177 ~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 177 GGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEE
T ss_pred cccCcccceeeeccc--ccceeEEEeeccceEEEEe
Confidence 789999995555433 3347888999888776655
|
... |
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.3e-06 Score=65.74 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=47.2
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 469 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 469 G~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
|.+|.+..|.|++ . ...+|+++||. ......|..+++.|+++||.|+++|+||.|.+.
T Consensus 1 G~~L~~~~w~p~~-------~-~k~~v~i~HG~--~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-------P-PKAVVVIVHGF--GEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred CcEEEEEEecCCC-------C-CCEEEEEeCCc--HHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCC
Confidence 5678888998866 2 56899999997 444457888999999999999999999866543
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0037 Score=60.05 Aligned_cols=176 Identities=9% Similarity=0.070 Sum_probs=106.3
Q ss_pred ceeeecceecCC-CCEEEEEEeccCCCCCCcceEEEEEEcCCCc---eEEeeeC--CCeeeeeeeCCCCCeEEEEEecCC
Q 004816 190 LVSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQN---IQVLVSG--SDFYAFPRMDPRGERMAWIEWHHP 263 (729)
Q Consensus 190 ~~~~~~~~~SPd-G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~---~~~lt~~--~~~~~~~~~SPDG~~la~~~~~~~ 263 (729)
..|...++|+|- |. |+++.... ..|.+++..++. .+.++.+ .......+|||.|++||-.+++-.
T Consensus 14 ~~r~W~~awhp~~g~-ilAscg~D--------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGV-ILASCGTD--------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred CCcEEEEEeccCCce-EEEeecCC--------ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 357788999997 66 56665443 346677776432 2222222 234567899999999998885532
Q ss_pred CCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE---Eeecc
Q 004816 264 NMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSL 340 (729)
Q Consensus 264 ~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~---~l~~~ 340 (729)
+-++.=. +++..-+..+++++ .-+-.++||++|.++.+..+ ...--||.++ ++++.. .|.+.
T Consensus 85 --------~~Iw~k~-~~efecv~~lEGHE----nEVK~Vaws~sG~~LATCSR-DKSVWiWe~d-eddEfec~aVL~~H 149 (312)
T KOG0645|consen 85 --------VVIWKKE-DGEFECVATLEGHE----NEVKCVAWSASGNYLATCSR-DKSVWIWEID-EDDEFECIAVLQEH 149 (312)
T ss_pred --------EEEeecC-CCceeEEeeeeccc----cceeEEEEcCCCCEEEEeeC-CCeEEEEEec-CCCcEEEEeeeccc
Confidence 3333323 56766677888887 66778899999994444444 2323344444 233333 33344
Q ss_pred CccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE---eeccCCcceEEe
Q 004816 341 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS---LLDIPFTDIDNI 403 (729)
Q Consensus 341 ~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~---~lt~~~~~v~~~ 403 (729)
..++-.-.|.| ..-|+++..-+....+|+-.. +..+. .|......+..+
T Consensus 150 tqDVK~V~WHP-------------t~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~ 201 (312)
T KOG0645|consen 150 TQDVKHVIWHP-------------TEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSL 201 (312)
T ss_pred cccccEEEEcC-------------CcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEE
Confidence 45555566764 344788888888888988765 44433 343333345555
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0028 Score=61.14 Aligned_cols=226 Identities=9% Similarity=0.007 Sum_probs=131.1
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.+.|.....+.|=.+|..+ |+.++..-+. +.+-..+...|||..++ .+.. ..|.++|.++.+.++
T Consensus 74 ~VWft~qg~gaiGhLdP~t--Gev~~ypLg~---Ga~Phgiv~gpdg~~Wi--td~~--------~aI~R~dpkt~evt~ 138 (353)
T COG4257 74 AVWFTAQGTGAIGHLDPAT--GEVETYPLGS---GASPHGIVVGPDGSAWI--TDTG--------LAIGRLDPKTLEVTR 138 (353)
T ss_pred ceEEecCccccceecCCCC--CceEEEecCC---CCCCceEEECCCCCeeE--ecCc--------ceeEEecCcccceEE
Confidence 4677766666788888888 7777665442 23335567899999543 3322 368899998888776
Q ss_pred ee--e--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 236 LV--S--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 236 lt--~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
.. . ..+....+.|.|+|+ |.|+....- --..|.. .+. +.++.... + .....++-.|||.+
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~--------yGrLdPa-~~~---i~vfpaPq-G--~gpyGi~atpdGsv 202 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGN-LWFTGQIGA--------YGRLDPA-RNV---ISVFPAPQ-G--GGPYGICATPDGSV 202 (353)
T ss_pred eecccccCCCcccceeeCCCcc-EEEeecccc--------ceecCcc-cCc---eeeeccCC-C--CCCcceEECCCCcE
Confidence 53 2 345567889999998 778773211 1122332 222 23333221 1 45567889999998
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCc--cccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDA--EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~--~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
+|.+-. ...|.++|+.++...++...+. .-..-.|+ |...-+|.+ ..+...|+++|.....
T Consensus 203 wyasla---gnaiaridp~~~~aev~p~P~~~~~gsRriws-------------dpig~~wit-twg~g~l~rfdPs~~s 265 (353)
T COG4257 203 WYASLA---GNAIARIDPFAGHAEVVPQPNALKAGSRRIWS-------------DPIGRAWIT-TWGTGSLHRFDPSVTS 265 (353)
T ss_pred EEEecc---ccceEEcccccCCcceecCCCccccccccccc-------------CccCcEEEe-ccCCceeeEeCccccc
Confidence 887654 2458899998886666652221 11223455 333334444 3566789999998877
Q ss_pred eEeeccCCc--ceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 390 LSLLDIPFT--DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 390 ~~~lt~~~~--~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+.....+.. .-.++ +++-+++.+.-... ..|.++|..+..
T Consensus 266 W~eypLPgs~arpys~rVD~~grVW~sea~a---gai~rfdpeta~ 308 (353)
T COG4257 266 WIEYPLPGSKARPYSMRVDRHGRVWLSEADA---GAIGRFDPETAR 308 (353)
T ss_pred ceeeeCCCCCCCcceeeeccCCcEEeecccc---CceeecCcccce
Confidence 765443322 22333 33333443322222 245666655444
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00092 Score=65.66 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=58.1
Q ss_pred ccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 298 ~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
.++.-.+||+|...+.+.++ .--+.||++|+...+...+.-....+....|.|+. . ++++. .|.
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd-~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~-----------p-rL~vc---tg~ 382 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRND-KYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGR-----------P-RLVVC---TGK 382 (447)
T ss_pred cccceeeecCCceEEeeecC-CCCceEEEEechhhhhhhhhhhccceeEEEeCCCC-----------c-eEEEE---cCC
Confidence 34556789999876656655 44567999999877666555444445566787642 2 23322 366
Q ss_pred EEEEEEECCCCceEeeccCCcceEEe
Q 004816 378 SYLGILDDFGHSLSLLDIPFTDIDNI 403 (729)
Q Consensus 378 ~~ly~~d~~~g~~~~lt~~~~~v~~~ 403 (729)
.+||...+.+-....+......|..+
T Consensus 383 srLY~W~psg~~~V~vP~~GF~i~~l 408 (447)
T KOG4497|consen 383 SRLYFWAPSGPRVVGVPKKGFNIQKL 408 (447)
T ss_pred ceEEEEcCCCceEEecCCCCceeeeE
Confidence 78999988776655665555566666
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0045 Score=59.19 Aligned_cols=217 Identities=7% Similarity=-0.055 Sum_probs=115.0
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
...++++...+..+.+||... ++...-+... ..-....|||||+++++...++ .|-.+|..+-++
T Consensus 76 ~~d~~atas~dk~ir~wd~r~--~k~~~~i~~~----~eni~i~wsp~g~~~~~~~kdD---------~it~id~r~~~~ 140 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRS--GKCTARIETK----GENINITWSPDGEYIAVGNKDD---------RITFIDARTYKI 140 (313)
T ss_pred CCcceEEecCCceEEEEEecc--CcEEEEeecc----CcceEEEEcCCCCEEEEecCcc---------cEEEEEecccce
Confidence 334566666677888999877 5554443331 1124568999999988875543 477777765433
Q ss_pred EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EE
Q 004816 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF 312 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~ 312 (729)
..-.+-..+.....|+-++. +.|+... ...+-++... .+.++..+..+. ...--+.++|||+ ++
T Consensus 141 ~~~~~~~~e~ne~~w~~~nd-~Fflt~G-------lG~v~ILsyp---sLkpv~si~AH~----snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 141 VNEEQFKFEVNEISWNNSND-LFFLTNG-------LGCVEILSYP---SLKPVQSIKAHP----SNCICIEFDPDGRYFA 205 (313)
T ss_pred eehhcccceeeeeeecCCCC-EEEEecC-------CceEEEEecc---ccccccccccCC----cceEEEEECCCCceEe
Confidence 22222233455678886655 7777632 1234444433 233344454444 3334568999999 44
Q ss_pred EEEecCCCceEEEEEEcCCC-eEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 313 FVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
.-+.+ . .+-++|++.- -.+.++..+..+ ..+.|. -+++++.+..++-...|..+.. |.++.
T Consensus 206 ~GsAD--A--lvSLWD~~ELiC~R~isRldwpV---------RTlSFS----~dg~~lASaSEDh~IDIA~vet-Gd~~~ 267 (313)
T KOG1407|consen 206 TGSAD--A--LVSLWDVDELICERCISRLDWPV---------RTLSFS----HDGRMLASASEDHFIDIAEVET-GDRVW 267 (313)
T ss_pred ecccc--c--eeeccChhHhhhheeeccccCce---------EEEEec----cCcceeeccCccceEEeEeccc-CCeEE
Confidence 43332 2 2334455432 133444333222 334444 3445555666677777765532 33455
Q ss_pred eeccCCcceEEeeeeCCEEEEEEeCCC
Q 004816 392 LLDIPFTDIDNITLGNDCLFVEGASGV 418 (729)
Q Consensus 392 ~lt~~~~~v~~~~~~~~~~~~~~~~~~ 418 (729)
+|........-...+...++.++.+..
T Consensus 268 eI~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 268 EIPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred EeeccCCceeEEecCCCceeeEEecCC
Confidence 665433222222555565665555443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0083 Score=71.23 Aligned_cols=143 Identities=8% Similarity=0.049 Sum_probs=86.1
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecC-CCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SP-dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
...+++...++.|.+||+.+ ++ ...+... ...+....|+| ||..|+....+ ..|.++|+.++.
T Consensus 545 ~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVAR--SQLVTEMKEH----EKRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCCCeEEEEECCC--CeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCc
Confidence 45566777788999999986 43 3333333 34567888997 77765544432 468888998776
Q ss_pred eEEeeeCCCeeeeeee-CCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 233 IQVLVSGSDFYAFPRM-DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 233 ~~~lt~~~~~~~~~~~-SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
...............| +++|+.|+..+. ...|+++|+. ++.. ....+.+.. ..+..+.|. |+..
T Consensus 610 ~~~~~~~~~~v~~v~~~~~~g~~latgs~--------dg~I~iwD~~-~~~~-~~~~~~~h~----~~V~~v~f~-~~~~ 674 (793)
T PLN00181 610 SIGTIKTKANICCVQFPSESGRSLAFGSA--------DHKVYYYDLR-NPKL-PLCTMIGHS----KTVSYVRFV-DSST 674 (793)
T ss_pred EEEEEecCCCeEEEEEeCCCCCEEEEEeC--------CCeEEEEECC-CCCc-cceEecCCC----CCEEEEEEe-CCCE
Confidence 5433333334455677 568998886652 3459999987 4431 123334443 455677886 6664
Q ss_pred EEEEecCCCceEEEEEEcC
Q 004816 312 FFVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~ 330 (729)
+++... .+.-.| +|+.
T Consensus 675 lvs~s~-D~~iki--Wd~~ 690 (793)
T PLN00181 675 LVSSST-DNTLKL--WDLS 690 (793)
T ss_pred EEEEEC-CCEEEE--EeCC
Confidence 444433 354444 4554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0037 Score=60.66 Aligned_cols=201 Identities=10% Similarity=0.052 Sum_probs=122.8
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC-ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
..+....|++|+++|+-.+.+ ..|.++|.-+. ++..++-...+....++||.|+.||--..+. .
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqD---------GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN------~ 120 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQD---------GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN------K 120 (343)
T ss_pred cceeeeEecCCcCeEEeeccC---------CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc------e
Confidence 456778899999998776654 46888898764 4555655666777889999999998665332 2
Q ss_pred cEEEEEEec-CCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeec-cCccccCC
Q 004816 270 AELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRP 347 (729)
Q Consensus 270 ~~l~~~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~ 347 (729)
-.||-+... .+|.....+.+.++. .+++--.|.+|++|+-. .|......+|+++|+...... ..+++-..
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHt----gylScC~f~dD~~ilT~----SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHT----GYLSCCRFLDDNHILTG----SGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred eEEEecccccccccceeeeeecCcc----ceeEEEEEcCCCceEec----CCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 334444322 123333345677776 78888889998876533 355667778999988776653 33333322
Q ss_pred cccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEE
Q 004816 348 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 348 ~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
...| .+...|++..-+....||-+ ..+. .+.......+|..+ ..+++.-+. +.+.+..-++|
T Consensus 193 sl~p------------~~~ntFvSg~cD~~aklWD~--R~~~c~qtF~ghesDINsv~ffP~G~afa-tGSDD~tcRly- 256 (343)
T KOG0286|consen 193 SLSP------------SDGNTFVSGGCDKSAKLWDV--RSGQCVQTFEGHESDINSVRFFPSGDAFA-TGSDDATCRLY- 256 (343)
T ss_pred ecCC------------CCCCeEEecccccceeeeec--cCcceeEeecccccccceEEEccCCCeee-ecCCCceeEEE-
Confidence 2222 23334555556777777744 3443 44555567778887 444444433 44444444444
Q ss_pred EEcCCC
Q 004816 426 VTLDDH 431 (729)
Q Consensus 426 ~d~~~~ 431 (729)
|+...
T Consensus 257 -DlRaD 261 (343)
T KOG0286|consen 257 -DLRAD 261 (343)
T ss_pred -eecCC
Confidence 45444
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0002 Score=66.50 Aligned_cols=106 Identities=19% Similarity=0.154 Sum_probs=79.3
Q ss_pred CEEEEEcCCCCC-CccccchhhhHHHhhCCcEEEEecCCCCC-CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 493 PLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGST-GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 493 P~vv~~hGg~~~-~~~~~~~~~~~~la~~G~~v~~~d~rGs~-g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
-.||++-|-..+ ........+..++.+.+|..+.+-.+-+. |||..-.+ .+.+|+..+++++...++ .
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk--------~D~edl~~l~~Hi~~~~f--S 106 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLK--------DDVEDLKCLLEHIQLCGF--S 106 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccccccccccccc--------ccHHHHHHHHHHhhccCc--c
Confidence 346666553222 33344456788889999999999988653 35543221 458999999999877754 3
Q ss_pred CcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccccChh
Q 004816 571 KRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~d~~ 608 (729)
.+|+++|||.|..-.+.+++ .+..+.++|+.+|+.|-.
T Consensus 107 t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 107 TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 58999999999999998885 677899999999999876
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=75.34 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=62.2
Q ss_pred hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 511 NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 511 ~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
+.++.++.++|..|+.++.++ +..+.. ...+..+..+++..+++.+.+.. ..++|-++|+|.||.+...+++
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~n-Pd~~~~-----~~~~edYi~e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala 200 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRN-PDASLA-----AKNLEDYILEGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALA 200 (445)
T ss_pred ccHHHHHHHcCCceEEEeccC-chHhhh-----hccHHHHHHHHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHH
Confidence 347899999999999999874 222211 11121222466778888887763 3478999999999999988887
Q ss_pred -CCCc-ceEEEEeccccCh
Q 004816 591 -FRDT-FKAGASLYGVADL 607 (729)
Q Consensus 591 -~~~~-~~a~v~~~~~~d~ 607 (729)
++.+ ++.++......|+
T Consensus 201 ~~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 201 LMAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhhcccccceeeecchhh
Confidence 6665 8888877655544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.4e-05 Score=78.19 Aligned_cols=208 Identities=14% Similarity=0.110 Sum_probs=117.7
Q ss_pred CccCceEEcC-C-CcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEE--CCEEEEEECCC
Q 004816 89 KRLGGTAVDG-H-GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g-~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~ 164 (729)
..+..++|+| + .++.. . .+.|++.||+....+ ...-..+|+.. . ..+.--+..+-+. ...++.++..+
T Consensus 628 t~vtDl~WdPFD~~rLAV-a---~ddg~i~lWr~~a~g-l~e~~~tPe~~-l--t~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAV-A---TDDGQINLWRLTANG-LPENEMTPEKI-L--TIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred ceeeecccCCCChHHeee-c---ccCceEEEEEeccCC-CCcccCCccee-e--ecccceEEEEEecchhhhHhhhhhcc
Confidence 3457889999 5 55544 2 268999999998772 23333344330 0 0111111111121 11233333345
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC---
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD--- 241 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~--- 241 (729)
..|-+||+.+. ..--+|... ...+.+++|||||++++-++.+ ..|+++...+++ +.+-++.+
T Consensus 700 ~Ti~lWDl~~~-~~~~~l~gH----tdqIf~~AWSpdGr~~AtVcKD---------g~~rVy~Prs~e-~pv~Eg~gpvg 764 (1012)
T KOG1445|consen 700 STIELWDLANA-KLYSRLVGH----TDQIFGIAWSPDGRRIATVCKD---------GTLRVYEPRSRE-QPVYEGKGPVG 764 (1012)
T ss_pred ceeeeeehhhh-hhhheeccC----cCceeEEEECCCCcceeeeecC---------ceEEEeCCCCCC-CccccCCCCcc
Confidence 57899999872 222344444 3557889999999999999875 358888887654 34443332
Q ss_pred -eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCC
Q 004816 242 -FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 242 -~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g 320 (729)
.-....|.=||+.|..+.++... ..+|-+||.+ .=....+ .....|-. .+.--|.+.+|..++|++.. |
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~S----eRQv~~Y~Aq-~l~~~pl-~t~~lDva--ps~LvP~YD~Ds~~lfltGK--G 834 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSS----ERQVQMYDAQ-TLDLRPL-YTQVLDVA--PSPLVPHYDYDSNVLFLTGK--G 834 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccc----hhhhhhhhhh-hccCCcc-eeeeeccc--CccccccccCCCceEEEecC--C
Confidence 23446799999999988866542 3456666654 1111111 01111100 23345667888777777765 6
Q ss_pred ceEEEEEEc
Q 004816 321 FWNLHKWIE 329 (729)
Q Consensus 321 ~~~l~~~d~ 329 (729)
...++.+.+
T Consensus 835 D~~v~~yEv 843 (1012)
T KOG1445|consen 835 DRFVNMYEV 843 (1012)
T ss_pred CceEEEEEe
Confidence 666666654
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.007 Score=66.09 Aligned_cols=204 Identities=14% Similarity=0.151 Sum_probs=126.3
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l 167 (729)
.+..+.|+- |+|++|=.. .-|+..+|.+... .-++ .+.-|.....+...++| +++.+...++.+
T Consensus 309 ~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsE-----sYVl------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSE-----SYVL------KQQGHSDRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred eeeEEEecccCCEEEEcCC---ccceEEEEEeecc-----ceee------eccccccceeeEEECCCCcEEEeccCCCcE
Confidence 455677777 888888443 3577777776432 1121 11223333444443333 445566678899
Q ss_pred EEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeee-CCCeee
Q 004816 168 YKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVS-GSDFYA 244 (729)
Q Consensus 168 ~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~-~~~~~~ 244 (729)
-+||... |-. ...+.+ ...+..+.|+.+|+.|+..+-+ +.+-.+|+....- |.+|. .+....
T Consensus 375 KvWn~~S--gfC~vTFteH----ts~Vt~v~f~~~g~~llssSLD---------GtVRAwDlkRYrNfRTft~P~p~Qfs 439 (893)
T KOG0291|consen 375 KVWNTQS--GFCFVTFTEH----TSGVTAVQFTARGNVLLSSSLD---------GTVRAWDLKRYRNFRTFTSPEPIQFS 439 (893)
T ss_pred EEEeccC--ceEEEEeccC----CCceEEEEEEecCCEEEEeecC---------CeEEeeeecccceeeeecCCCceeee
Confidence 9999886 432 233333 3557888999999987666543 3577788876543 44443 222333
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 324 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l 324 (729)
-.+..|.|. |++.. .. +..+|++++++ +|++ +.++.+++ +.+....++|+|.+++.... ...-++
T Consensus 440 cvavD~sGe-lV~AG-~~-----d~F~IfvWS~q-TGql--lDiLsGHE----gPVs~l~f~~~~~~LaS~SW-DkTVRi 504 (893)
T KOG0291|consen 440 CVAVDPSGE-LVCAG-AQ-----DSFEIFVWSVQ-TGQL--LDILSGHE----GPVSGLSFSPDGSLLASGSW-DKTVRI 504 (893)
T ss_pred EEEEcCCCC-EEEee-cc-----ceEEEEEEEee-cCee--eehhcCCC----CcceeeEEccccCeEEeccc-cceEEE
Confidence 456667788 44454 21 35679999999 8987 78889987 77888899999996666655 455566
Q ss_pred EEEEcCCCeEEEe
Q 004816 325 HKWIESNNEVLAI 337 (729)
Q Consensus 325 ~~~d~~~g~~~~l 337 (729)
|-+=-..++...|
T Consensus 505 W~if~s~~~vEtl 517 (893)
T KOG0291|consen 505 WDIFSSSGTVETL 517 (893)
T ss_pred EEeeccCceeeeE
Confidence 6433344454444
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0002 Score=71.06 Aligned_cols=196 Identities=14% Similarity=0.090 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHH-HHHHHHHhCCCCCCCc
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCC-SCATFLVGSGKADEKR 572 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~-~~~~~l~~~~~~d~~r 572 (729)
.|+++|++.+ ....|..+++.+...++.|+.++++|....... ...++++. ..++.+.... ...+
T Consensus 2 ~lf~~p~~gG--~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~~~----------~~si~~la~~y~~~I~~~~--~~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGG--SASSYRPLARALPDDVIGVYGIEYPGRGDDEPP----------PDSIEELASRYAEAIRARQ--PEGP 67 (229)
T ss_dssp EEEEESSTTC--SGGGGHHHHHHHTTTEEEEEEECSTTSCTTSHE----------ESSHHHHHHHHHHHHHHHT--SSSS
T ss_pred eEEEEcCCcc--CHHHHHHHHHhCCCCeEEEEEEecCCCCCCCCC----------CCCHHHHHHHHHHHhhhhC--CCCC
Confidence 5888999743 557788888888776799999999865411110 01233332 2334444432 2248
Q ss_pred EEEEEcChHHHHHHHHHh----CCCcceEEEEeccccCh-hHH--hhhc-ch-hhhhh----------------hhhhcC
Q 004816 573 LCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADL-SML--RAET-HK-FESRY----------------IDNLVG 627 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~~~d~-~~~--~~~~-~~-~~~~~----------------~~~~~~ 627 (729)
+.|+|||+||.+|+-+|. ....+..++++.+.... ... .... .. ..... +...+.
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSPPPSIKERPRSREPSDEQFIEELRRIGGTPDASLEDEELLARLLR 147 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCSSTTCHSCHHHHHCHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEecCCCCCcccchhhhhhhHHHHHHHHHHhcCCchhhhcCHHHHHHHHH
Confidence 999999999999998885 45567778877743221 100 0000 00 00000 000000
Q ss_pred ----ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC-CCCEEEEEECCCCccc-CCcccHHHHHH
Q 004816 628 ----SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN-GLPVALVEYEGEQHGF-RKAENIKFTLE 701 (729)
Q Consensus 628 ----~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~~~~gH~~-~~~~~~~~~~~ 701 (729)
+...+... +......-.+|.++.....|+..... .....+.+.+. ..+++++.++| +|.. .. ++..+..+
T Consensus 148 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~~~~~~~~v~G-~H~~~l~-~~~~~i~~ 223 (229)
T PF00975_consen 148 ALRDDFQALENY-SIRPIDKQKVPITLFYALDDPLVSMD-RLEEADRWWDYTSGDVEVHDVPG-DHFSMLK-PHVAEIAE 223 (229)
T ss_dssp HHHHHHHHHHTC-S-TTSSSESSEEEEEEECSSSSSSHH-CGGHHCHHHGCBSSSEEEEEESS-ETTGHHS-TTHHHHHH
T ss_pred HHHHHHHHHhhc-cCCccccCCCcEEEEecCCCccccch-hhhhHHHHHHhcCCCcEEEEEcC-CCcEecc-hHHHHHHH
Confidence 00111111 11111111356888888888876543 11222224443 44788999987 7864 33 56666666
Q ss_pred HHHHHH
Q 004816 702 QQMVFF 707 (729)
Q Consensus 702 ~~~~fl 707 (729)
.|.+||
T Consensus 224 ~I~~~~ 229 (229)
T PF00975_consen 224 KIAEWL 229 (229)
T ss_dssp HHHHHH
T ss_pred HHhccC
Confidence 666654
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00024 Score=75.53 Aligned_cols=189 Identities=14% Similarity=0.141 Sum_probs=108.8
Q ss_pred CCCEEEEEcCCCCCCccccchhhhH-HHhhCC--cEEEEecCCCC-CCCchhHHHhhccCCCcccHHHHHHHHHHHHh--
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQ-YWTSRG--WAFVDVNYGGS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVG-- 564 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~-~la~~G--~~v~~~d~rGs-~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-- 564 (729)
..|++++.||.|.......+.+..+ .+.-.| .-|..+|++-. +|-+-. ...+-...+.++.+.
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG~nI~-----------h~ae~~vSf~r~kvlei 243 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGGANIK-----------HAAEYSVSFDRYKVLEI 243 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCCcchH-----------HHHHHHHHHhhhhhhhh
Confidence 3589999999883222222222222 232234 44556666521 211100 002223333342222
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccC
Q 004816 565 SGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 642 (729)
Q Consensus 565 ~~~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 642 (729)
.+......|+|+|.|+|+.++.+... ....+.++|++.=..+... ...+ .+-+.+.
T Consensus 244 ~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vd--------------gprg--------irDE~Ll 301 (784)
T KOG3253|consen 244 TGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVD--------------GPRG--------IRDEALL 301 (784)
T ss_pred hccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCC--------------cccC--------CcchhhH
Confidence 24455678999999999777766665 3334666666532211110 0000 0112234
Q ss_pred CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcc--------cHH----HHHHHHHHHHHHH
Q 004816 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE--------NIK----FTLEQQMVFFARV 710 (729)
Q Consensus 643 ~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~--------~~~----~~~~~~~~fl~~~ 710 (729)
.++.|+|++.|.+|..|+++..+++.+++++ .++++++.+++|.+.-+. .+. ...+.|.+|+...
T Consensus 302 dmk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmaipk~k~esegltqseVd~~i~~aI~efvt~~ 378 (784)
T KOG3253|consen 302 DMKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAIPKRKVESEGLTQSEVDSAIAQAIKEFVTIA 378 (784)
T ss_pred hcCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccCCccccccccccHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999987 779999999999874221 122 3445566666666
Q ss_pred hCCCC
Q 004816 711 VGHFD 715 (729)
Q Consensus 711 l~~~~ 715 (729)
+.+.+
T Consensus 379 l~c~e 383 (784)
T KOG3253|consen 379 LNCTE 383 (784)
T ss_pred hcCCC
Confidence 65333
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.014 Score=63.78 Aligned_cols=220 Identities=8% Similarity=-0.043 Sum_probs=128.8
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
...+.++.|||++.++++.+..+.+ .-.|.+.|+.+|+...-. -.+...+.+|.+||+.++|++.++.+ ...
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~G~e----~y~lr~kdL~tg~~~~d~-i~~~~~~~~Wa~d~~~lfYt~~d~~~---rp~ 200 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVLGDE----QYTLRFKDLATGEELPDE-ITNTSGSFAWAADGKTLFYTRLDENH---RPD 200 (682)
T ss_pred eeeeeeeeCCCCceEEEEEeccccc----EEEEEEEecccccccchh-hcccccceEEecCCCeEEEEEEcCCC---Ccc
Confidence 4567889999999999998876655 467888899888643211 11234567999999999999977655 345
Q ss_pred EEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCC--CeEEEeeccCccccCC
Q 004816 271 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN--NEVLAIYSLDAEFSRP 347 (729)
Q Consensus 271 ~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~--g~~~~l~~~~~~~~~~ 347 (729)
+||...+. +.......+....+. ...-.+.=+...+ |+..... .....+++++.+. ++.+.+.+.... .
T Consensus 201 kv~~h~~g-t~~~~d~lvyeE~d~---~f~~~v~~s~s~~yi~i~~~~-~~tsE~~ll~a~~p~~~p~vv~pr~~g---~ 272 (682)
T COG1770 201 KVWRHRLG-TPGSSDELVYEEKDD---RFFLSVGRSRSEAYIVISLGS-HITSEVRLLDADDPEAEPKVVLPRENG---V 272 (682)
T ss_pred eEEEEecC-CCCCcceEEEEcCCC---cEEEEeeeccCCceEEEEcCC-CcceeEEEEecCCCCCceEEEEEcCCC---c
Confidence 68888776 322223445555542 1222233344445 4444433 4556777777654 344555532211 1
Q ss_pred cccccCcceeeeeecCCCCEEEEEEEECC-eEEEEEEEC--CCCceEeeccCCc--ceEEeeeeCCEEEEEEeCCCCCce
Q 004816 348 LWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDD--FGHSLSLLDIPFT--DIDNITLGNDCLFVEGASGVEPSS 422 (729)
Q Consensus 348 ~w~~~~~~~~~l~~~~~~~~l~~~s~~~g-~~~ly~~d~--~~g~~~~lt~~~~--~v~~~~~~~~~~~~~~~~~~~~~~ 422 (729)
.+.. +| .+..+|+.++.+| ..+|+.... ....++.+..+.. .+.++..-++. ++...+.+.-+.
T Consensus 273 eY~~---------eh-~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~-lVl~eR~~glp~ 341 (682)
T COG1770 273 EYSV---------EH-GGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADH-LVLLERQEGLPR 341 (682)
T ss_pred EEee---------ee-cCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccE-EEEEecccCCce
Confidence 1111 11 4567888888888 567777655 2223444433322 23444333443 444555666778
Q ss_pred EEEEEcCCCcceeee
Q 004816 423 VAKVTLDDHKLKAVD 437 (729)
Q Consensus 423 ly~~d~~~~~~~~lt 437 (729)
+++.+.++++...|.
T Consensus 342 v~v~~~~~~~~~~i~ 356 (682)
T COG1770 342 VVVRDRKTGEERGIA 356 (682)
T ss_pred EEEEecCCCceeeEE
Confidence 888888877765554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0072 Score=60.47 Aligned_cols=271 Identities=12% Similarity=0.037 Sum_probs=144.1
Q ss_pred CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCc
Q 004816 88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 88 ~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
..++....||- +..|..- .+-.|...+|....+ ..+..+..+.+ ++.-..|.+. .+++....++.
T Consensus 106 KDSVt~~~Fsh-dgtlLAT--GdmsG~v~v~~~stg---~~~~~~~~e~~--------dieWl~WHp~a~illAG~~DGs 171 (399)
T KOG0296|consen 106 KDSVTCCSFSH-DGTLLAT--GDMSGKVLVFKVSTG---GEQWKLDQEVE--------DIEWLKWHPRAHILLAGSTDGS 171 (399)
T ss_pred CCceEEEEEcc-CceEEEe--cCCCccEEEEEcccC---ceEEEeecccC--------ceEEEEecccccEEEeecCCCc
Confidence 34556666764 2222221 224566666665544 22222221100 1222334433 45666667889
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCC-Ceee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGS-DFYA 244 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~-~~~~ 244 (729)
+|.|.+.. +...++-.+. ..+.....|.|||++++...++ ..|.++++.+|++. .++... ....
T Consensus 172 vWmw~ip~--~~~~kv~~Gh---~~~ct~G~f~pdGKr~~tgy~d---------gti~~Wn~ktg~p~~~~~~~e~~~~~ 237 (399)
T KOG0296|consen 172 VWMWQIPS--QALCKVMSGH---NSPCTCGEFIPDGKRILTGYDD---------GTIIVWNPKTGQPLHKITQAEGLELP 237 (399)
T ss_pred EEEEECCC--cceeeEecCC---CCCcccccccCCCceEEEEecC---------ceEEEEecCCCceeEEecccccCcCC
Confidence 99999986 4444444442 3455667899999998776653 56999999998764 444222 1222
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec--------CCCCCccccccCceeCCCCcEEEEEe
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA--------GFDPTIVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~wspDG~l~~~~~ 316 (729)
...++-+|..+. .... ....++++.. +|++ +.+.. ..+ .-..++....||.+=.|+....
T Consensus 238 ~~~~~~~~~~~~-~g~~-------e~~~~~~~~~-sgKV--v~~~n~~~~~l~~~~e-~~~esve~~~~ss~lpL~A~G~ 305 (399)
T KOG0296|consen 238 CISLNLAGSTLT-KGNS-------EGVACGVNNG-SGKV--VNCNNGTVPELKPSQE-ELDESVESIPSSSKLPLAACGS 305 (399)
T ss_pred ccccccccceeE-eccC-------CccEEEEccc-cceE--EEecCCCCccccccch-hhhhhhhhcccccccchhhccc
Confidence 235566666443 3211 2235555544 4554 22222 111 0003344455655433444333
Q ss_pred cCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eecc
Q 004816 317 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDI 395 (729)
Q Consensus 317 ~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt~ 395 (729)
- . ..|.+||.+..+.|.+...+..+....|. + ...++++..+|.. +..|..+|+.+ ..+.
T Consensus 306 v-d--G~i~iyD~a~~~~R~~c~he~~V~~l~w~-------------~-t~~l~t~c~~g~v--~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 306 V-D--GTIAIYDLAASTLRHICEHEDGVTKLKWL-------------N-TDYLLTACANGKV--RQWDARTGQLKFTYTG 366 (399)
T ss_pred c-c--ceEEEEecccchhheeccCCCceEEEEEc-------------C-cchheeeccCceE--EeeeccccceEEEEec
Confidence 3 2 35777788888888777555445444554 3 3455566666654 44577777755 4555
Q ss_pred CCcceEEe-eeeCCEEEEEEeCC
Q 004816 396 PFTDIDNI-TLGNDCLFVEGASG 417 (729)
Q Consensus 396 ~~~~v~~~-~~~~~~~~~~~~~~ 417 (729)
....|..+ ...++++++..+..
T Consensus 367 H~~~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred CchheeEEEEcCCCcEEEEecCC
Confidence 56667666 44555666655543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0084 Score=60.96 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=114.4
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 273 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~ 273 (729)
+...+|.||+++++..-.. ...+=++|++.++...-.+-+++..-.-+.+++ ....+ .. ..+.
T Consensus 98 ~~~~ls~dgk~~~V~N~TP-------a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~-F~~lC---~D------Gsl~ 160 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTP-------ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRG-FSMLC---GD------GSLL 160 (342)
T ss_dssp GGEEE-TTSSEEEEEEESS-------SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTE-EEEEE---TT------SCEE
T ss_pred cceEEccCCcEEEEEccCC-------CCeEEEEECCCCceeeeecCCCEEEEEecCCCc-eEEEe---cC------CceE
Confidence 5678999999865543322 367999999998876555555554433333332 22222 21 2255
Q ss_pred EEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccC---ccccCCcc
Q 004816 274 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD---AEFSRPLW 349 (729)
Q Consensus 274 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~---~~~~~~~w 349 (729)
.+.++.+|+.... ..+-.+.+...-+..+.++.++. ++|.+-. .++|.+|+.+...+..-+-. .......|
T Consensus 161 ~v~Ld~~Gk~~~~-~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W 235 (342)
T PF06433_consen 161 TVTLDADGKEAQK-STKVFDPDDDPLFEHPAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDAEKADGW 235 (342)
T ss_dssp EEEETSTSSEEEE-EEEESSTTTS-B-S--EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HHHHHTTE
T ss_pred EEEECCCCCEeEe-eccccCCCCcccccccceECCCCeEEEEecC----CEEEEEeccCCcccccCcccccCccccccCc
Confidence 6666655664322 11111111003445677776654 8888765 46888888776654432111 01123578
Q ss_pred cccCcc-eeeeeecCCCCEEEEEEEE-------CCeEEEEEEECCCCce-EeeccCCcceEEe--eeeCCEEEEEEeCCC
Q 004816 350 VFGINS-YEIIQSHGEKNLIACSYRQ-------NGRSYLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGV 418 (729)
Q Consensus 350 ~~~~~~-~~~l~~~~~~~~l~~~s~~-------~g~~~ly~~d~~~g~~-~~lt~~~~~v~~~--~~~~~~~~~~~~~~~ 418 (729)
-|+.-. +.+-+ ..++||+.... ++...||.+|+++++. .++... ..+.++ +.+++-++|..+.
T Consensus 236 rPGG~Q~~A~~~---~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~-- 309 (342)
T PF06433_consen 236 RPGGWQLIAYHA---ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSA-- 309 (342)
T ss_dssp EE-SSS-EEEET---TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEET--
T ss_pred CCcceeeeeecc---ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcC--
Confidence 876533 33332 56778777653 3457899999999874 344432 223334 5555656655543
Q ss_pred CCceEEEEEcCCCcc
Q 004816 419 EPSSVAKVTLDDHKL 433 (729)
Q Consensus 419 ~~~~ly~~d~~~~~~ 433 (729)
....|+.+|..+|+.
T Consensus 310 ~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 310 GDGTLDVYDAATGKL 324 (342)
T ss_dssp TTTEEEEEETTT--E
T ss_pred CCCeEEEEeCcCCcE
Confidence 235799999999875
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0018 Score=61.81 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=107.2
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 271 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 271 (729)
.+.+.+|+|...-++++...+ ..|.++|.-.++...-+...+......|||||+++++...+ ..
T Consensus 66 svdql~w~~~~~d~~atas~d--------k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kd--------D~ 129 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGD--------KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKD--------DR 129 (313)
T ss_pred chhhheeCCCCCcceEEecCC--------ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCc--------cc
Confidence 456788999776666665433 35888899888877666555555668999999999988733 33
Q ss_pred EEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccc
Q 004816 272 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 351 (729)
Q Consensus 272 l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 351 (729)
|-.+|.. +-+. ....... .-.....|.-++.++|..+. .|.-+|..+. ..+.+.+-.+.- .
T Consensus 130 it~id~r-~~~~---~~~~~~~----~e~ne~~w~~~nd~Fflt~G-lG~v~ILsyp----sLkpv~si~AH~-s----- 190 (313)
T KOG1407|consen 130 ITFIDAR-TYKI---VNEEQFK----FEVNEISWNNSNDLFFLTNG-LGCVEILSYP----SLKPVQSIKAHP-S----- 190 (313)
T ss_pred EEEEEec-ccce---eehhccc----ceeeeeeecCCCCEEEEecC-CceEEEEecc----ccccccccccCC-c-----
Confidence 6667765 2221 1111111 23356789877778888876 6777777664 223332211110 0
Q ss_pred cCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC-CceEeeccCCcceEEe-eeeCCEEEEEEe
Q 004816 352 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-HSLSLLDIPFTDIDNI-TLGNDCLFVEGA 415 (729)
Q Consensus 352 ~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~-g~~~~lt~~~~~v~~~-~~~~~~~~~~~~ 415 (729)
.---+.|.| +|+++.. ...+.-..|| |++. -=++.++.-+|.|..+ .+-+++++..++
T Consensus 191 nCicI~f~p---~GryfA~-GsADAlvSLW--D~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 191 NCICIEFDP---DGRYFAT-GSADALVSLW--DVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred ceEEEEECC---CCceEee-ccccceeecc--ChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 001233443 6665543 3344555565 3321 1146777788999998 455666666554
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00044 Score=67.43 Aligned_cols=263 Identities=10% Similarity=0.006 Sum_probs=142.8
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccc--cccCCceEEEECC-EEEEEECCCC
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTA--QEYGGGAFRIFGD-TVIFSNYKDQ 165 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~i~~~~~~~~ 165 (729)
.+++.++|| |+.+.- . +-+|-+.+|.+..+ +.+.-+- +.+...+ ......+++++.+ .++.+...+|
T Consensus 215 h~EcA~FSPDgqyLvs-g---SvDGFiEVWny~~G---KlrKDLk--YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVS-G---SVDGFIEVWNYTTG---KLRKDLK--YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred chhheeeCCCCceEee-c---cccceeeeehhccc---hhhhhhh--hhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 468999999 654432 2 24678888887654 3332211 1111111 1112334444433 3444445577
Q ss_pred cEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeCCCee
Q 004816 166 RLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSGSDFY 243 (729)
Q Consensus 166 ~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~~~~~ 243 (729)
.|-+|.+.+ |. .++.... ....+...+||.|+.+|+-...+ ..+.+-.+.+|+. +..-....+.
T Consensus 286 kIKvWri~t--G~ClRrFdrA---HtkGvt~l~FSrD~SqiLS~sfD---------~tvRiHGlKSGK~LKEfrGHsSyv 351 (508)
T KOG0275|consen 286 KIKVWRIET--GQCLRRFDRA---HTKGVTCLSFSRDNSQILSASFD---------QTVRIHGLKSGKCLKEFRGHSSYV 351 (508)
T ss_pred cEEEEEEec--chHHHHhhhh---hccCeeEEEEccCcchhhccccc---------ceEEEeccccchhHHHhcCccccc
Confidence 888888887 43 3333311 12345778899999998766543 2355556777653 2222334466
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCce
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 322 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~ 322 (729)
+...|++||.+|.-.+.+ ..+.+++.. +++. ...+.....+ ..+..+-.-|..- -+.+.++ ..
T Consensus 352 n~a~ft~dG~~iisaSsD--------gtvkvW~~K-tteC--~~Tfk~~~~d--~~vnsv~~~PKnpeh~iVCNr---sn 415 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSD--------GTVKVWHGK-TTEC--LSTFKPLGTD--YPVNSVILLPKNPEHFIVCNR---SN 415 (508)
T ss_pred cceEEcCCCCeEEEecCC--------ccEEEecCc-chhh--hhhccCCCCc--ccceeEEEcCCCCceEEEEcC---CC
Confidence 778999999999876633 336677766 4443 2222211111 4445555556554 4445554 34
Q ss_pred EEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eeccCCcceE
Q 004816 323 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDID 401 (729)
Q Consensus 323 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt~~~~~v~ 401 (729)
.+|+++..+.-++....+..+-++ +.. ....| .|.++|...+ + ..+|-+...+|.++ .++-..-++.
T Consensus 416 tv~imn~qGQvVrsfsSGkREgGd--Fi~----~~lSp---kGewiYcigE-D--~vlYCF~~~sG~LE~tl~VhEkdvI 483 (508)
T KOG0275|consen 416 TVYIMNMQGQVVRSFSSGKREGGD--FIN----AILSP---KGEWIYCIGE-D--GVLYCFSVLSGKLERTLPVHEKDVI 483 (508)
T ss_pred eEEEEeccceEEeeeccCCccCCc--eEE----EEecC---CCcEEEEEcc-C--cEEEEEEeecCceeeeeeccccccc
Confidence 688899877666766655433222 111 11122 6777776654 3 35777776666654 4444444444
Q ss_pred Ee
Q 004816 402 NI 403 (729)
Q Consensus 402 ~~ 403 (729)
.+
T Consensus 484 Gl 485 (508)
T KOG0275|consen 484 GL 485 (508)
T ss_pred cc
Confidence 44
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=3e-05 Score=87.76 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=83.8
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cc--hhhhHHHhhCCcEEEEecCCCC-CCCchhHHHhhcc
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL--NLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLLG 545 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~--~~~~~~la~~G~~v~~~d~rGs-~g~g~~~~~~~~~ 545 (729)
..+..-++.|.... ..+ +||+|++|||....... .+ ......+..+...|+.++||-+ -|+...-.....+
T Consensus 95 DCLylNV~tp~~~~----~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~g 169 (545)
T KOG1516|consen 95 DCLYLNVYTPQGCS----ESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPG 169 (545)
T ss_pred CCceEEEeccCCCc----cCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCC
Confidence 34666677786621 112 89999999985322221 11 2233445566899999999952 2222221122244
Q ss_pred CCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEecccc
Q 004816 546 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 605 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~ 605 (729)
++| ..|...+++|+.++ -.-|+++|.|+|||+||..+..++. ...+|..+|..+|..
T Consensus 170 N~g---l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 170 NLG---LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred ccc---HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 554 67999999999875 3469999999999999999977765 235788888777653
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.023 Score=59.63 Aligned_cols=267 Identities=12% Similarity=0.094 Sum_probs=139.6
Q ss_pred HHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEEC
Q 004816 83 VVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNY 162 (729)
Q Consensus 83 ~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (729)
.+.+-.+.+..+.++|++...|... -+|...-|.. + .|..-.+++.. |..-+..+..+...-+|+..
T Consensus 315 ~i~GHnK~ITaLtv~~d~~~i~Sgs---yDG~I~~W~~--~-~g~~~~~~g~~-------h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 315 VISGHNKSITALTVSPDGKTIYSGS---YDGHINSWDS--G-SGTSDRLAGKG-------HTNQIKGMAASESGELFTIG 381 (603)
T ss_pred eecccccceeEEEEcCCCCEEEeec---cCceEEEEec--C-Ccccccccccc-------ccceEEEEeecCCCcEEEEe
Confidence 3444577788999998333333332 3566555543 3 22444454333 33334455555533344544
Q ss_pred CCCcEEEEeCCCCCCC----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee
Q 004816 163 KDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS 238 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~ 238 (729)
-+..|++.++.++ +- ...|... .-..+.++||..++.+... +|.++.-.++ ...+.-
T Consensus 382 ~Dd~l~~~~~~~~-~~t~~~~~~lg~Q-------P~~lav~~d~~~avv~~~~----------~iv~l~~~~~-~~~~~~ 442 (603)
T KOG0318|consen 382 WDDTLRVISLKDN-GYTKSEVVKLGSQ-------PKGLAVLSDGGTAVVACIS----------DIVLLQDQTK-VSSIPI 442 (603)
T ss_pred cCCeEEEEecccC-cccccceeecCCC-------ceeEEEcCCCCEEEEEecC----------cEEEEecCCc-ceeecc
Confidence 5667888888542 21 1122221 1345677787766666543 3555542222 222211
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecC
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 318 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~ 318 (729)
+ -.....+.+||++.+|.-. ....|+++.+. +++........... ..+..+++||||..+...+.
T Consensus 443 ~-y~~s~vAv~~~~~~vaVGG--------~Dgkvhvysl~-g~~l~ee~~~~~h~----a~iT~vaySpd~~yla~~Da- 507 (603)
T KOG0318|consen 443 G-YESSAVAVSPDGSEVAVGG--------QDGKVHVYSLS-GDELKEEAKLLEHR----AAITDVAYSPDGAYLAAGDA- 507 (603)
T ss_pred c-cccceEEEcCCCCEEEEec--------ccceEEEEEec-CCcccceeeeeccc----CCceEEEECCCCcEEEEecc-
Confidence 1 1223568999999888655 23349999998 55543333333443 56678999999985445544
Q ss_pred CCceEEEEEEcCCCeEEEe--eccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 319 NGFWNLHKWIESNNEVLAI--YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 319 ~g~~~l~~~d~~~g~~~~l--~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
. ..+..+|.++.+...- .-..+.+....|+| ++ .++.+..-+....||.++.-...+......
T Consensus 508 ~--rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP------------~n-~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 508 S--RKVVLYDVASREVKTNRWAFHTAKINCVAWSP------------NN-KLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred C--CcEEEEEcccCceecceeeeeeeeEEEEEeCC------------Cc-eEEEeccccceEEEEEccChhhheEecccc
Confidence 2 3466677777665211 11222333455664 43 455555556666677665333332222223
Q ss_pred CcceEEe-eeeCCEEE
Q 004816 397 FTDIDNI-TLGNDCLF 411 (729)
Q Consensus 397 ~~~v~~~-~~~~~~~~ 411 (729)
...+..+ ..++..++
T Consensus 573 ~~gVn~v~wlde~tvv 588 (603)
T KOG0318|consen 573 LGGVNSVAWLDESTVV 588 (603)
T ss_pred ccCceeEEEecCceEE
Confidence 3346666 44444443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.028 Score=59.44 Aligned_cols=231 Identities=12% Similarity=0.058 Sum_probs=123.2
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee---CC
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS---GS 240 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~---~~ 240 (729)
..+|.+||+.+ |...+--......-....=++||-|+++++.... ..|-+++..+ ...|.. ..
T Consensus 281 ~~~l~IWDI~t--G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----------~sisIyEtps--f~lld~Kslki 346 (698)
T KOG2314|consen 281 GQQLIIWDIAT--GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----------NSISIYETPS--FMLLDKKSLKI 346 (698)
T ss_pred CceEEEEEccc--cchhcceeccCCCccccceEEeccCCceeEEecc----------ceEEEEecCc--eeeecccccCC
Confidence 35899999998 6543322111001122234689999998776644 2344444322 111111 11
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC-eeeeEEecCCCCCccccccCceeCCCCc-EEEEEecC
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 318 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~ 318 (729)
....++.|||-+.-|||..-...+. ..++-++.+. ++. ++...++. .+...+.|-..|. |.+-.++.
T Consensus 347 ~gIr~FswsP~~~llAYwtpe~~~~---parvtL~evP-s~~~iRt~nlfn-------VsDckLhWQk~gdyLcvkvdR~ 415 (698)
T KOG2314|consen 347 SGIRDFSWSPTSNLLAYWTPETNNI---PARVTLMEVP-SKREIRTKNLFN-------VSDCKLHWQKSGDYLCVKVDRH 415 (698)
T ss_pred ccccCcccCCCcceEEEEcccccCC---cceEEEEecC-ccceeeecccee-------eeccEEEeccCCcEEEEEEEee
Confidence 2345678999999999987444332 3346666665 443 22222222 2335678999999 77766652
Q ss_pred C-----C---ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC--CeEEEEEEECCCC
Q 004816 319 N-----G---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGH 388 (729)
Q Consensus 319 ~-----g---~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~--g~~~ly~~d~~~g 388 (729)
. | ...|++++-..= .....+....+-...|-| .|+++...+... .....|.+....+
T Consensus 416 tK~~~~g~f~n~eIfrireKdI-pve~velke~vi~FaWEP------------~gdkF~vi~g~~~k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 416 TKSKVKGQFSNLEIFRIREKDI-PVEVVELKESVIAFAWEP------------HGDKFAVISGNTVKNTVSFYAVETNIK 482 (698)
T ss_pred ccccccceEeeEEEEEeeccCC-Cceeeecchheeeeeecc------------CCCeEEEEEccccccceeEEEeecCCC
Confidence 1 1 124555543221 111122223344556766 556655555433 3456777776566
Q ss_pred ceEeecc-CCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 389 SLSLLDI-PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 389 ~~~~lt~-~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+.+.+.. +......+ .++.+++++.++-....+.++-+|.+-..
T Consensus 483 ~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 483 KPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred chhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence 6554432 22223333 45566666666655566678888766433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0003 Score=74.49 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=64.7
Q ss_pred eEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 221 TEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 221 ~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
..|-++|+.+++.+ .|....+.+.+.+|||||++||-+- ....|.++... .++ .+ +.++..+- ...
T Consensus 700 ~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc--------KDg~~rVy~Pr-s~e-~p--v~Eg~gpv-gtR 766 (1012)
T KOG1445|consen 700 STIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC--------KDGTLRVYEPR-SRE-QP--VYEGKGPV-GTR 766 (1012)
T ss_pred ceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee--------cCceEEEeCCC-CCC-Cc--cccCCCCc-cCc
Confidence 56888899987665 4555566778899999999999876 23458888766 443 12 22222110 022
Q ss_pred ccCceeCCCCc-EEEEEecCCCceEEEEEEcCCC
Q 004816 300 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 300 ~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g 332 (729)
-.++.|.-||+ ++++.-+.....+|-+||.++-
T Consensus 767 gARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 767 GARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred ceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 35788999999 6666555455566777776553
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.014 Score=57.41 Aligned_cols=219 Identities=16% Similarity=0.172 Sum_probs=119.9
Q ss_pred CcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccccccc---CCceEEE
Q 004816 77 SPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEY---GGGAFRI 152 (729)
Q Consensus 77 ~~lt~e~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~---~~~~~~~ 152 (729)
.||.+..+-+-.+.+.++.++- |+.+.-.. +++.+.||..++-...+.+ ..|..+ +| ....|++
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~----~Dr~Ir~w~~~DF~~~eHr-------~~R~nv-e~dhpT~V~Fap 142 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATIS----GDRSIRLWDVRDFENKEHR-------CIRQNV-EYDHPTRVVFAP 142 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEe----CCceEEEEecchhhhhhhh-------Hhhccc-cCCCceEEEECC
Confidence 4566666766677788999987 66665544 3567778876543111111 222222 12 2235666
Q ss_pred ECCEEEEEECCCCcEEEEeCCC---CCCCCeecCCCC--CCCc---eeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 153 FGDTVIFSNYKDQRLYKHSIDS---KDSSPLPITPDY--GEPL---VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 153 ~~~~i~~~~~~~~~l~~~d~~~---~~~~~~~lt~~~--~~~~---~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+...+++.-.....|+++.+.. | +-.-..+..+ +.+. ...-+.-..-.+++|.-.+.+ ..|+
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG-~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d---------t~i~ 212 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDG-SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD---------TKIC 212 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccC-CCCcccccccccccchhcccceEEEeecCCceEEEEecCC---------CcEE
Confidence 6666666655566788877642 1 1111111111 0000 011222233344443333322 4689
Q ss_pred EEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeee---eEEecCCCCCcccccc
Q 004816 225 AIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK---RVCVAGFDPTIVESPT 301 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~---~~~~~~~~~~~~~~~~ 301 (729)
++++.+.....+....-.....+.||||+.|+...... ...+|-.=...+|+... +-.+.+.. ..+.
T Consensus 213 lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTp------DVkVwE~~f~kdG~fqev~rvf~LkGH~----saV~ 282 (420)
T KOG2096|consen 213 LWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP------DVKVWEPIFTKDGTFQEVKRVFSLKGHQ----SAVL 282 (420)
T ss_pred EEecCCceeeeeccccccccceeeCCCCcEEEEecCCC------CceEEEEEeccCcchhhhhhhheeccch----hhee
Confidence 99998544444433333445678999999999777422 23344443444565433 23455665 6677
Q ss_pred CceeCCCCc-EEEEEecCCCceEEEEEEc
Q 004816 302 EPKWSSKGE-LFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 302 ~~~wspDG~-l~~~~~~~~g~~~l~~~d~ 329 (729)
..+||++.+ ++-++ . .|.|+||-.|.
T Consensus 283 ~~aFsn~S~r~vtvS-k-DG~wriwdtdV 309 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVS-K-DGKWRIWDTDV 309 (420)
T ss_pred eeeeCCCcceeEEEe-c-CCcEEEeeccc
Confidence 889999998 55444 4 58999996554
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0024 Score=72.38 Aligned_cols=121 Identities=17% Similarity=0.106 Sum_probs=72.5
Q ss_pred ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 190 ~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
...+.|..||||+..++-+.-+ ..|.+++..+.+.. .+-......-+..|.|=||++|-.+.|+
T Consensus 129 ~~DV~Dv~Wsp~~~~lvS~s~D---------nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDr------ 193 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDSLLVSVSLD---------NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDR------ 193 (942)
T ss_pred CCccceeccCCCccEEEEeccc---------ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCc------
Confidence 3567899999999987766554 35778888776443 3333445677899999999999877333
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCC-CccccccCceeCCCCc-EEEEEecCCCceEEEEEEc
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~ 329 (729)
.|-++.+. +=.+ ..++....+. .-...+.++.|||||+ |+....-..+...+-+++-
T Consensus 194 --tikvwrt~-dw~i-~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 194 --TLKVWRTS-DWGI-EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred --eEEEEEcc-ccee-eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 35555544 2111 1222222210 0003567899999999 5443333234444555544
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00035 Score=78.84 Aligned_cols=98 Identities=11% Similarity=0.175 Sum_probs=67.8
Q ss_pred CEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe-eeCCCeeeeeeeCCCCCeEEE-EEecCCCCCCCCcEEEEEEecCC
Q 004816 203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL-VSGSDFYAFPRMDPRGERMAW-IEWHHPNMPWDKAELWVGYISEN 280 (729)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l-t~~~~~~~~~~~SPDG~~la~-~~~~~~~~~~~~~~l~~~d~~~~ 280 (729)
.+|+|+.+.. .+|.++|.++..++.+ +........|+|||||++||| ++...-. ....||+.++..+
T Consensus 319 tkiAfv~~~~--------~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~---g~s~vYv~~L~t~ 387 (912)
T TIGR02171 319 AKLAFRNDVT--------GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLP---GKSSVYVRNLNAS 387 (912)
T ss_pred eeEEEEEcCC--------CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCC---CCceEEEEehhcc
Confidence 4578887632 3799999999899988 777777788999999999999 6533311 2466999999843
Q ss_pred CCeeeeEEecCCCCCccccccCceeCCCCc--EEEEEec
Q 004816 281 GDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDR 317 (729)
Q Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~wspDG~--l~~~~~~ 317 (729)
|. ..+.+-.+. ..+.+.+...+|. |+|+++.
T Consensus 388 ~~-~~vkl~ve~-----aaiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 388 GS-GLVKLPVEN-----AAIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred CC-CceEeeccc-----ccccceEecCCCCeEEEEEcCC
Confidence 33 223333332 3444445567776 8888876
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0016 Score=67.52 Aligned_cols=226 Identities=11% Similarity=0.063 Sum_probs=133.3
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCC-CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
+-+|+- ..+-|-+||+... +...++...+ -..........++|||+.|+.--+ ...|-++|++.-.++
T Consensus 432 rhVyTg-GkgcVKVWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe---------astlsiWDLAapTpr 500 (705)
T KOG0639|consen 432 RHVYTG-GKGCVKVWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE---------ASTLSIWDLAAPTPR 500 (705)
T ss_pred ceeEec-CCCeEEEeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccc---------cceeeeeeccCCCcc
Confidence 445553 3457888898652 2222222211 011244577889999999876543 256888899875543
Q ss_pred ---EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 235 ---VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 235 ---~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
+|+...-.....+.|||.+ |+|....+.+ |.++|+. +..+ ++.+.+.. .+..-+..++||.-
T Consensus 501 ikaeltssapaCyALa~spDak-vcFsccsdGn-------I~vwDLh-nq~~--VrqfqGht----DGascIdis~dGtk 565 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAISPDAK-VCFSCCSDGN-------IAVWDLH-NQTL--VRQFQGHT----DGASCIDISKDGTK 565 (705)
T ss_pred hhhhcCCcchhhhhhhcCCccc-eeeeeccCCc-------EEEEEcc-ccee--eecccCCC----CCceeEEecCCCce
Confidence 3443322334568899977 8888754433 8899998 6654 66777775 56677889999984
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
+|+..- ...+..+|+..+.. +. ..+|.+..++.+.. | .+.++.+-.+ ..+++++...+.+.-
T Consensus 566 lWTGGl---DntvRcWDlregrq--lq--qhdF~SQIfSLg~c-----P---~~dWlavGMe---ns~vevlh~skp~ky 627 (705)
T KOG0639|consen 566 LWTGGL---DNTVRCWDLREGRQ--LQ--QHDFSSQIFSLGYC-----P---TGDWLAVGME---NSNVEVLHTSKPEKY 627 (705)
T ss_pred eecCCC---ccceeehhhhhhhh--hh--hhhhhhhheecccC-----C---Cccceeeecc---cCcEEEEecCCccce
Confidence 444332 24566778766532 22 12233333333221 1 5566665543 235666677677777
Q ss_pred eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEE
Q 004816 392 LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKV 426 (729)
Q Consensus 392 ~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~ 426 (729)
+|...+.-|-++ +..-+++++.++ .++-...|+.
T Consensus 628 qlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrt 662 (705)
T KOG0639|consen 628 QLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRT 662 (705)
T ss_pred eecccccEEEEEEecccCceeeecC-chhhhhhccC
Confidence 888877777777 555555655544 3434445554
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0072 Score=65.95 Aligned_cols=226 Identities=14% Similarity=0.095 Sum_probs=125.5
Q ss_pred cCCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 145 YGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
|--++..+-++..+......|.|-++|+.+. .-.+.+..+ ....+..+.+|||+..+..+.++. -.+|
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AH----dgaIWsi~~~pD~~g~vT~saDkt-------VkfW 481 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAH----DGAIWSISLSPDNKGFVTGSADKT-------VKFW 481 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhcc----ccceeeeeecCCCCceEEecCCcE-------EEEE
Confidence 3334444456666667677888999999862 223333333 245688899999998776655442 1222
Q ss_pred ----EEEcCCCce-EEe-------eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCC
Q 004816 225 ----AIALNGQNI-QVL-------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF 292 (729)
Q Consensus 225 ----~~dl~~g~~-~~l-------t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~ 292 (729)
+.+ ..|.. +.| ..-.+......+||||++||..--+ ..+.++-++ +=+. ...+.++
T Consensus 482 df~l~~~-~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLd--------nTVkVyflD-tlKF--flsLYGH 549 (888)
T KOG0306|consen 482 DFKLVVS-VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLD--------NTVKVYFLD-TLKF--FLSLYGH 549 (888)
T ss_pred eEEEEec-cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEecc--------CeEEEEEec-ceee--eeeeccc
Confidence 222 22222 211 1223344567899999999865532 234444444 3333 3345555
Q ss_pred CCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeE-EEeeccCccccCCcccccCcceeeeeecCCCCEEEEE
Q 004816 293 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 371 (729)
Q Consensus 293 ~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~ 371 (729)
. ..+..+..|||++++.+... ...-.+|=+|. |.- +.+...+ .....+.|+ +..+++|+
T Consensus 550 k----LPV~smDIS~DSklivTgSA-DKnVKiWGLdF--GDCHKS~fAHd---------DSvm~V~F~----P~~~~FFt 609 (888)
T KOG0306|consen 550 K----LPVLSMDISPDSKLIVTGSA-DKNVKIWGLDF--GDCHKSFFAHD---------DSVMSVQFL----PKTHLFFT 609 (888)
T ss_pred c----cceeEEeccCCcCeEEeccC-CCceEEecccc--chhhhhhhccc---------CceeEEEEc----ccceeEEE
Confidence 4 55667789999996655544 33445554443 322 2222211 112345677 45688999
Q ss_pred EEECCeEEEEEEECCC-CceEeeccCCcceEEe-eeeCCEEEEEEeC
Q 004816 372 YRQNGRSYLGILDDFG-HSLSLLDIPFTDIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 372 s~~~g~~~ly~~d~~~-g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~ 416 (729)
..+++...-| |-+. ..++.|......+..+ ..+++.+++.++.
T Consensus 610 ~gKD~kvKqW--Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 610 CGKDGKVKQW--DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred ecCcceEEee--chhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence 9888866554 2111 1234555555667666 4555556665553
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0033 Score=67.27 Aligned_cols=212 Identities=11% Similarity=0.065 Sum_probs=123.6
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-eE--------
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQ-------- 234 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-~~-------- 234 (729)
...+|+|+..+ +...+|...+ ...+....|+++|+.|+.-..+. .+.++|....+ ++
T Consensus 196 g~~vylW~~~s--~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~~g---------~v~iwD~~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 196 GQSVYLWSASS--GSVTELCSFG---EELVTSVKWSPDGSHLAVGTSDG---------TVQIWDVKEQKKTRTLRGSHAS 261 (484)
T ss_pred cceEEEEecCC--CceEEeEecC---CCceEEEEECCCCCEEEEeecCC---------eEEEEehhhccccccccCCcCc
Confidence 44799999988 7778887653 35578889999999987765432 34444433211 00
Q ss_pred ----------EeeeC------------------------CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCC
Q 004816 235 ----------VLVSG------------------------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN 280 (729)
Q Consensus 235 ----------~lt~~------------------------~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~ 280 (729)
.++.| .....+..|++||+++|--. +...++++|.. +
T Consensus 262 rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg--------nDN~~~Iwd~~-~ 332 (484)
T KOG0305|consen 262 RVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG--------NDNVVFIWDGL-S 332 (484)
T ss_pred eeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCC--------CccceEeccCC-C
Confidence 11111 12345788999999887433 23458888864 2
Q ss_pred CCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeee
Q 004816 281 GDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEII 359 (729)
Q Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l 359 (729)
.. +...+.++. ..+-.++|+|=-+ |+.+... .....|..+|..+|+...-......+....|++
T Consensus 333 ~~--p~~~~~~H~----aAVKA~awcP~q~~lLAsGGG-s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk-------- 397 (484)
T KOG0305|consen 333 PE--PKFTFTEHT----AAVKALAWCPWQSGLLATGGG-SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK-------- 397 (484)
T ss_pred cc--ccEEEeccc----eeeeEeeeCCCccCceEEcCC-CcccEEEEEEcCCCcEecccccCCceeeEEEcC--------
Confidence 22 233444444 5566788999655 7666544 445677788888887655544444555666765
Q ss_pred eecCCCCEEEEEEE-ECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCC
Q 004816 360 QSHGEKNLIACSYR-QNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGV 418 (729)
Q Consensus 360 ~~~~~~~~l~~~s~-~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~ 418 (729)
..+.|+.+-. ..+...||.+.. -..+..+..+...|-.+ ..+++..++.++.++
T Consensus 398 ----~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 398 ----KYKELLSTHGYSENQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADE 453 (484)
T ss_pred ----CCCEEEEecCCCCCcEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence 4444544432 234456776643 23344555555556555 344445555554443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.009 Score=58.06 Aligned_cols=216 Identities=18% Similarity=0.133 Sum_probs=117.7
Q ss_pred eeeecceecCCCCE-EEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeC--CCeeeeeeeCCCCCeEEEEEecCCCCC
Q 004816 191 VSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMP 266 (729)
Q Consensus 191 ~~~~~~~~SPdG~~-l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~--~~~~~~~~~SPDG~~la~~~~~~~~~~ 266 (729)
.|--+.+++|--.+ ++|.+... ..-+++|..+.+. ..+... --++..=.|||||++||-+..+...
T Consensus 68 aR~Hgi~~~p~~~ravafARrPG--------tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~-- 137 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPG--------TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP-- 137 (366)
T ss_pred cccCCeecCCCCcceEEEEecCC--------ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC--
Confidence 34467788885554 45554432 4577889988654 444443 3355666999999998877755533
Q ss_pred CCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec------CCCc---------eEEEEEEcCC
Q 004816 267 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR------KNGF---------WNLHKWIESN 331 (729)
Q Consensus 267 ~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~------~~g~---------~~l~~~d~~~ 331 (729)
+..-|-+||.. .+ ...+--+.... .....+.|.+||+++.+.+. .-|. -.|..+|..+
T Consensus 138 -~rGViGvYd~r-~~-fqrvgE~~t~G----iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 138 -NRGVIGVYDAR-EG-FQRVGEFSTHG----IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred -CCceEEEEecc-cc-cceecccccCC----cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 44568888876 22 22222233333 56678999999995444432 0111 2355666555
Q ss_pred CeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC----eEEEEEEECCCCceEeeccCCc-------c
Q 004816 332 NEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG----RSYLGILDDFGHSLSLLDIPFT-------D 399 (729)
Q Consensus 332 g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g----~~~ly~~d~~~g~~~~lt~~~~-------~ 399 (729)
|+.. +.+ ...+ .-...+..+..- .++.++|...-.| ...|.-.-..++.++.+..+.. .
T Consensus 211 G~liekh~-Lp~~----l~~lSiRHld~g----~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anY 281 (366)
T COG3490 211 GNLIEKHT-LPAS----LRQLSIRHLDIG----RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANY 281 (366)
T ss_pred cchhhhcc-Cchh----hhhcceeeeeeC----CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhh
Confidence 5432 111 0000 001111222221 5566766655333 2345555566777776665432 2
Q ss_pred eEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcce
Q 004816 400 IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 434 (729)
Q Consensus 400 v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~ 434 (729)
+.++ ......++..++... .....+|.++|++.
T Consensus 282 igsiA~n~~~glV~lTSP~G--N~~vi~da~tG~vv 315 (366)
T COG3490 282 IGSIAANRRDGLVALTSPRG--NRAVIWDAATGAVV 315 (366)
T ss_pred hhheeecccCCeEEEecCCC--CeEEEEEcCCCcEE
Confidence 3444 344455665555433 23667788999863
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0033 Score=70.07 Aligned_cols=150 Identities=14% Similarity=0.130 Sum_probs=89.4
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
+..+|..+++-+ .+..|-+++++.. +..+.+-.. ...+....++|+|++|+.++-+ +.|++++++
T Consensus 104 v~g~g~~iaags-dD~~vK~~~~~D~-s~~~~lrgh----~apVl~l~~~p~~~fLAvss~d---------G~v~iw~~~ 168 (933)
T KOG1274|consen 104 VSGSGKMIAAGS-DDTAVKLLNLDDS-SQEKVLRGH----DAPVLQLSYDPKGNFLAVSSCD---------GKVQIWDLQ 168 (933)
T ss_pred EecCCcEEEeec-CceeEEEEecccc-chheeeccc----CCceeeeeEcCCCCEEEEEecC---------ceEEEEEcc
Confidence 333344555543 3446788887762 333333333 3456788899999998777654 579999999
Q ss_pred CCceE-Eeee---C-----CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccc
Q 004816 230 GQNIQ-VLVS---G-----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 300 (729)
Q Consensus 230 ~g~~~-~lt~---~-----~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 300 (729)
++... .|+. . ...+..++|+|||.++++...+ ..|-+++.. +.+.. ..+..... . ..+
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d--------~~Vkvy~r~-~we~~-f~Lr~~~~-s--s~~ 235 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD--------NTVKVYSRK-GWELQ-FKLRDKLS-S--SKF 235 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC--------CeEEEEccC-Cceeh-eeeccccc-c--cce
Confidence 87643 3322 1 2345678999998888887733 347777766 44431 22222221 0 225
Q ss_pred cCceeCCCCc-EEEEEecCCCceEEEEEEcCC
Q 004816 301 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 301 ~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~ 331 (729)
....|||.|+ |+...- .| +|.++|.++
T Consensus 236 ~~~~wsPnG~YiAAs~~--~g--~I~vWnv~t 263 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTL--DG--QILVWNVDT 263 (933)
T ss_pred EEEEEcCCCcEEeeecc--CC--cEEEEeccc
Confidence 6688999999 544433 34 355556554
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.021 Score=55.37 Aligned_cols=249 Identities=12% Similarity=0.052 Sum_probs=123.0
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCccc-CCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDI-TPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.+..++.+|++.|+|..+ +.-.|=+.++.+ |+..+. +..+...+..+-+..+..| +++ ....|-
T Consensus 63 ap~dvapapdG~VWft~q-----g~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~W--------itd-~~~aI~ 127 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQ-----GTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAW--------ITD-TGLAIG 127 (353)
T ss_pred CccccccCCCCceEEecC-----ccccceecCCCC-CceEEEecCCCCCCceEEECCCCCee--------Eec-CcceeE
Confidence 345566666778888764 233455677663 333222 2222122222222333322 232 222566
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-CCeeeeee
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG-SDFYAFPR 247 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~-~~~~~~~~ 247 (729)
++|.++ .+.++.+-..+-+......++|.|+|+ |.|+....- -=++|..++.++..-.. ...-.+.+
T Consensus 128 R~dpkt--~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~---------yGrLdPa~~~i~vfpaPqG~gpyGi~ 195 (353)
T COG4257 128 RLDPKT--LEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGA---------YGRLDPARNVISVFPAPQGGGPYGIC 195 (353)
T ss_pred EecCcc--cceEEeecccccCCCcccceeeCCCcc-EEEeecccc---------ceecCcccCceeeeccCCCCCCcceE
Confidence 777766 555443322111124457788999998 566654321 11556655544443221 11235678
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC-CCCcEEEEEecCCCceEEEE
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-SKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws-pDG~l~~~~~~~~g~~~l~~ 326 (729)
-.|||+ +.|.+.. ...|-.+|.. ++.. ++...++.. . .. .+-.|+ |.|+ ++++. .+...|++
T Consensus 196 atpdGs-vwyasla-------gnaiaridp~-~~~a-ev~p~P~~~-~--~g-sRriwsdpig~-~witt--wg~g~l~r 258 (353)
T COG4257 196 ATPDGS-VWYASLA-------GNAIARIDPF-AGHA-EVVPQPNAL-K--AG-SRRIWSDPIGR-AWITT--WGTGSLHR 258 (353)
T ss_pred ECCCCc-EEEEecc-------ccceEEcccc-cCCc-ceecCCCcc-c--cc-ccccccCccCc-EEEec--cCCceeeE
Confidence 899998 7777632 3347777766 4532 222222210 0 12 223354 4454 44444 36678999
Q ss_pred EEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 327 WIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 327 ~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
+|+.......-- +.. .+...++.. |....+|.++- +...|.++|..+...+.+..+
T Consensus 259 fdPs~~sW~eypLPgs--------~arpys~rV-----D~~grVW~sea-~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 259 FDPSVTSWIEYPLPGS--------KARPYSMRV-----DRHGRVWLSEA-DAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred eCcccccceeeeCCCC--------CCCcceeee-----ccCCcEEeecc-ccCceeecCcccceEEEecCC
Confidence 999876654332 111 000111111 44445555543 233567777777666655543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=64.99 Aligned_cols=179 Identities=11% Similarity=0.064 Sum_probs=106.8
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC--C--c--------e
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--Q--N--------I 233 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~--g--~--------~ 233 (729)
.+-.++-.. ..+..|+... ...+...+|-|-+...+.+.-. ..|+++..+. . . .
T Consensus 121 vVriy~kss--t~pt~Lks~s---QrnvtclawRPlsaselavgCr---------~gIciW~~s~tln~~r~~~~~s~~~ 186 (445)
T KOG2139|consen 121 VVRIYDKSS--TCPTKLKSVS---QRNVTCLAWRPLSASELAVGCR---------AGICIWSDSRTLNANRNIRMMSTHH 186 (445)
T ss_pred EEEEeccCC--CCCceecchh---hcceeEEEeccCCcceeeeeec---------ceeEEEEcCcccccccccccccccc
Confidence 345555544 5677777652 3456778899977665555332 2355554432 1 1 1
Q ss_pred EEeee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 234 QVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 234 ~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
-++.. |....+..+|.+||..++-.+.+ ...|.++|++ +|...+ +..... ++++...|||||..
T Consensus 187 ~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g-------sssi~iWdpd-tg~~~p--L~~~gl----gg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 187 LQVLQDPGHNPVTSMQWNEDGTILVTASFG-------SSSIMIWDPD-TGQKIP--LIPKGL----GGFSLLKWSPDGDV 252 (445)
T ss_pred hhheeCCCCceeeEEEEcCCCCEEeecccC-------cceEEEEcCC-CCCccc--ccccCC----CceeeEEEcCCCCE
Confidence 12222 33456778999999988866643 3558889988 676433 322222 56678899999995
Q ss_pred EEEEecCCCceEEEEEE-cCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 312 FFVTDRKNGFWNLHKWI-ESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d-~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
+|.+.- ++..+||-.+ .-+. .+.++ ..+.+....|++ .|+.|+|+. .|...||.+..+++.
T Consensus 253 lfaAt~-davfrlw~e~q~wt~-erw~l-gsgrvqtacWsp------------cGsfLLf~~--sgsp~lysl~f~~~~ 314 (445)
T KOG2139|consen 253 LFAATC-DAVFRLWQENQSWTK-ERWIL-GSGRVQTACWSP------------CGSFLLFAC--SGSPRLYSLTFDGED 314 (445)
T ss_pred EEEecc-cceeeeehhccccee-cceec-cCCceeeeeecC------------CCCEEEEEE--cCCceEEEEeecCCC
Confidence 555544 4667777322 1122 22222 233666788987 788888776 466788888765543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=72.37 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=89.4
Q ss_pred CCEEEEEECC-CC--cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 154 GDTVIFSNYK-DQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 154 ~~~i~~~~~~-~~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
+...+|.... ++ +||..|- ..+.++-.+. -..+.-..|.|+..+++.-+.+ ..+-++|..+
T Consensus 503 P~GyYFatas~D~tArLWs~d~----~~PlRifagh---lsDV~cv~FHPNs~Y~aTGSsD---------~tVRlWDv~~ 566 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDH----NKPLRIFAGH---LSDVDCVSFHPNSNYVATGSSD---------RTVRLWDVST 566 (707)
T ss_pred CCceEEEecCCCceeeeeeccc----CCchhhhccc---ccccceEEECCcccccccCCCC---------ceEEEEEcCC
Confidence 3345555432 22 6666654 3344544441 2334557799999986655433 3466678888
Q ss_pred CceEEeeeC-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 231 QNIQVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 231 g~~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
|...++..| .+.....++||+|++|+-.+ + ...|.++|+. +|+. +..+.++. ..+..+.||.||
T Consensus 567 G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~--e------d~~I~iWDl~-~~~~--v~~l~~Ht----~ti~SlsFS~dg 631 (707)
T KOG0263|consen 567 GNSVRIFTGHKGPVTALAFSPCGRYLASGD--E------DGLIKIWDLA-NGSL--VKQLKGHT----GTIYSLSFSRDG 631 (707)
T ss_pred CcEEEEecCCCCceEEEEEcCCCceEeecc--c------CCcEEEEEcC-CCcc--hhhhhccc----CceeEEEEecCC
Confidence 887777655 45677889999999998554 2 2348999998 7765 44455554 667789999999
Q ss_pred cEEEEEecCCCceEEEEEEc
Q 004816 310 ELFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 310 ~l~~~~~~~~g~~~l~~~d~ 329 (729)
.++.+... ...+-++|+
T Consensus 632 ~vLasgg~---DnsV~lWD~ 648 (707)
T KOG0263|consen 632 NVLASGGA---DNSVRLWDL 648 (707)
T ss_pred CEEEecCC---CCeEEEEEc
Confidence 85444432 233444455
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00018 Score=63.97 Aligned_cols=117 Identities=18% Similarity=0.337 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhh
Q 004816 556 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYE 634 (729)
Q Consensus 556 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (729)
.+.-.|++++-. +.+..+-|.||||+.|+.+.- ||+.|..+|+.+|++|.+.+.... . +.+.|.
T Consensus 88 ~AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~y-----------y-ddDv~y- 152 (227)
T COG4947 88 RAYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGY-----------Y-DDDVYY- 152 (227)
T ss_pred HHHHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcccc-----------c-cCceee-
Confidence 344457777633 466888999999999998887 999999999999999987653321 1 111121
Q ss_pred cCcccccCCCC----------CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 635 KSPINFVDKFS----------CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 635 ~sp~~~~~~i~----------~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
++|..++..+. ..+.+..|.+|+.. .+.+++-+.|.++.++..+.+..+-.|.
T Consensus 153 nsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L--~~~~~L~~~l~dKqipaw~~~WggvaHd 215 (227)
T COG4947 153 NSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFL--DNNQHLSRLLSDKQIPAWMHVWGGVAHD 215 (227)
T ss_pred cChhhhccCCcChHHHHHHhhccEEEEecCccccc--cchHHHHHHhccccccHHHHHhcccccc
Confidence 55555544443 34677888888875 3567788888887777777776665664
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.015 Score=60.27 Aligned_cols=246 Identities=11% Similarity=0.029 Sum_probs=139.2
Q ss_pred CCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 146 ~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+..+++|..+ .++.....+|.+-+|+.++ .....|... ...+...+|+-+|.+|+-..-+ ..+.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G--~l~~tl~~H----kgPI~slKWnk~G~yilS~~vD---------~tti 301 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDG--NLISTLGQH----KGPIFSLKWNKKGTYILSGGVD---------GTTI 301 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCc--hhhhhhhcc----CCceEEEEEcCCCCEEEeccCC---------ccEE
Confidence 4566777633 4455555788888998886 555555555 3456788999999998765443 3577
Q ss_pred EEEcCCCceEEeeeCCCe-eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 225 AIALNGQNIQVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~~~~-~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
++|..+|+.++..+-... .-...|=-+.+ |.... ....|+++-+.. . +++..+.++. ..+..+
T Consensus 302 lwd~~~g~~~q~f~~~s~~~lDVdW~~~~~---F~ts~------td~~i~V~kv~~-~--~P~~t~~GH~----g~V~al 365 (524)
T KOG0273|consen 302 LWDAHTGTVKQQFEFHSAPALDVDWQSNDE---FATSS------TDGCIHVCKVGE-D--RPVKTFIGHH----GEVNAL 365 (524)
T ss_pred EEeccCceEEEeeeeccCCccceEEecCce---EeecC------CCceEEEEEecC-C--Ccceeeeccc----CceEEE
Confidence 889988888776542211 12234533322 22212 234477777762 2 2355566666 677889
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
.|.|.|.|+..+.+ .+...||-..- ++-...|-....++....|+|...- ..-+ ..+..+.++.-++...+|-+
T Consensus 366 k~n~tg~LLaS~Sd-D~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v-~~n~---~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 366 KWNPTGSLLASCSD-DGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPV-TSNP---NMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred EECCCCceEEEecC-CCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCc-cCCC---cCCceEEEeecCCeEEEEEc
Confidence 99999996655555 57777775322 2222222222223334455542111 0000 33344555555677777744
Q ss_pred ECCCC-ceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 384 DDFGH-SLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 384 d~~~g-~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
..| .+..++.+...|.++ ..++++++...+.. ..+...+.+.+++
T Consensus 440 --~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d---g~V~iws~~~~~l 486 (524)
T KOG0273|consen 440 --ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD---GCVHIWSTKTGKL 486 (524)
T ss_pred --cCCceeEeeccCCCceEEEEecCCCcEEEecCCC---CeeEeccccchhe
Confidence 444 455677777788888 55556665554432 2345555555553
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0041 Score=64.18 Aligned_cols=215 Identities=11% Similarity=0.054 Sum_probs=124.0
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cchhhhHHHhhCCcEEEEecCCCCCCC-
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGSTGY- 535 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~la~~G~~v~~~d~rGs~g~- 535 (729)
-+..++.. ++.++- -+|.|.. .++...+||++||........ ....+.+.|.+.||.++.+..+.-...
T Consensus 62 ~e~~~L~~--~~~~fl-aL~~~~~------~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~ 132 (310)
T PF12048_consen 62 DEVQWLQA--GEERFL-ALWRPAN------SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPA 132 (310)
T ss_pred hhcEEeec--CCEEEE-EEEeccc------CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCccccc
Confidence 45555655 455555 4566654 245678999999964444332 344577888999999999877641100
Q ss_pred --------------chhHHH--------------hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHH
Q 004816 536 --------------GREFRE--------------RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA 587 (729)
Q Consensus 536 --------------g~~~~~--------------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~ 587 (729)
+..-.. .....+-.....-+.+++.++.+++ ..+|+|+||+.|+++++.
T Consensus 133 ~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~ 209 (310)
T PF12048_consen 133 SPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAAR 209 (310)
T ss_pred CCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHH
Confidence 000000 0000000011333556666776664 245999999999999999
Q ss_pred HHh--CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHH
Q 004816 588 ALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQAR 665 (729)
Q Consensus 588 ~~~--~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~ 665 (729)
++. .+..+.+.|++++........ ..-...+.+++.|+|=|++.+ .......+.
T Consensus 210 ~la~~~~~~~daLV~I~a~~p~~~~n-----------------------~~l~~~la~l~iPvLDi~~~~-~~~~~~~a~ 265 (310)
T PF12048_consen 210 YLAEKPPPMPDALVLINAYWPQPDRN-----------------------PALAEQLAQLKIPVLDIYSAD-NPASQQTAK 265 (310)
T ss_pred HHhcCCCcccCeEEEEeCCCCcchhh-----------------------hhHHHHhhccCCCEEEEecCC-ChHHHHHHH
Confidence 998 444588999998864332210 011123567789999998876 322222222
Q ss_pred HHHHHHHhCC-CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 666 KIYKALKENG-LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 666 ~~~~~l~~~g-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
.=.+..+++. ...+-+.+++..|.... ......++|..|+.++
T Consensus 266 ~R~~~a~r~~~~~YrQ~~L~~~~~~~~~--~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 266 QRKQAAKRNKKPDYRQIQLPGLPDNPSG--WQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHHHhccCCCceeEecCCCCCChhh--HHHHHHHHHHHHHHhh
Confidence 2222233332 34566677776665432 2223888889998875
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00016 Score=69.78 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=53.1
Q ss_pred EEEEcCCCCCCccccchhhhHHHhhCCcE---EEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 495 LVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 495 vv~~hGg~~~~~~~~~~~~~~~la~~G~~---v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
||++||.. ......|..+.++|.++||. |++++|....+ ........ .......++.+.++.+++. ...
T Consensus 4 VVlVHG~~-~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~--~~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTG-GNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNG--SPSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TT-TTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCH--HTHHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCC-cchhhCHHHHHHHHHHcCCCcceeEeccCCCCCC--CCcccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 78899973 33456678899999999999 89999943222 11111111 1112356777788877765 345
Q ss_pred cEEEEEcChHHHHHHHHHh
Q 004816 572 RLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~ 590 (729)
||-|+|||+||.++-+++.
T Consensus 76 kVDIVgHS~G~~iaR~yi~ 94 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIK 94 (219)
T ss_dssp -EEEEEETCHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHH
Confidence 9999999999999988875
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.56 E-value=9.7e-05 Score=76.63 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCCCCC-ccccchhhhHHH-hh--CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC
Q 004816 490 EKPPLLVKSHGGPTSE-ARGILNLSIQYW-TS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 565 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~-~~~~~~~~~~~l-a~--~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 565 (729)
.+.|++|++||..... .......+...+ .. .+++|+++|+.... ...|..+.... ......+...++.|...
T Consensus 69 ~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a--~~~Y~~a~~n~--~~vg~~la~~l~~L~~~ 144 (331)
T PF00151_consen 69 PSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGA--SNNYPQAVANT--RLVGRQLAKFLSFLINN 144 (331)
T ss_dssp TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHH--SS-HHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhc--cccccchhhhH--HHHHHHHHHHHHHHHhh
Confidence 4679999999975544 233334444544 44 58999999985311 11222221100 01134455667777755
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEEecccc
Q 004816 566 GKADEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYGVA 605 (729)
Q Consensus 566 ~~~d~~ri~i~G~S~GG~~a~~~~~-~~~--~~~a~v~~~~~~ 605 (729)
..++.++|.|+|||+||++|..+.. ... ++..+..+.|..
T Consensus 145 ~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 145 FGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp H---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred cCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 5678999999999999999999987 443 788888887753
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00095 Score=67.56 Aligned_cols=139 Identities=15% Similarity=0.141 Sum_probs=93.0
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
.+++...++.|-.||..+ ...++--+. +.++.....+++|..|.....+ ..|-++|+.+.++++.
T Consensus 314 ~~~SgH~DkkvRfwD~Rs--~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRD---------dtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRS--ADKTRSVPL----GGRVTSLDLSMDGLELLSSSRD---------DTLKVIDLRTKEIRQT 378 (459)
T ss_pred eeeecccccceEEEeccC--CceeeEeec----CcceeeEeeccCCeEEeeecCC---------CceeeeecccccEEEE
Confidence 344544566899999776 443333333 3578888999999998766433 3588899999888877
Q ss_pred eeCCC-----eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-
Q 004816 237 VSGSD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 310 (729)
Q Consensus 237 t~~~~-----~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~- 310 (729)
....+ ..+-..|||||+++|--+. +..||++++. +|++..+......+ ..+....|+|-|.
T Consensus 379 ~sA~g~k~asDwtrvvfSpd~~YvaAGS~--------dgsv~iW~v~-tgKlE~~l~~s~s~----~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 379 FSAEGFKCASDWTRVVFSPDGSYVAAGSA--------DGSVYIWSVF-TGKLEKVLSLSTSN----AAITSLSWNPSGSG 445 (459)
T ss_pred eeccccccccccceeEECCCCceeeeccC--------CCcEEEEEcc-CceEEEEeccCCCC----cceEEEEEcCCCch
Confidence 54332 2456789999999886552 3459999999 78875554444444 4567889999998
Q ss_pred EEEEEecCCCceEEE
Q 004816 311 LFFVTDRKNGFWNLH 325 (729)
Q Consensus 311 l~~~~~~~~g~~~l~ 325 (729)
++ .++. +....||
T Consensus 446 Ll-sadk-~~~v~lW 458 (459)
T KOG0288|consen 446 LL-SADK-QKAVTLW 458 (459)
T ss_pred hh-cccC-CcceEec
Confidence 44 3333 3444444
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.045 Score=52.77 Aligned_cols=159 Identities=9% Similarity=0.015 Sum_probs=96.8
Q ss_pred CCceEEEE---CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceE
Q 004816 146 GGGAFRIF---GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 146 ~~~~~~~~---~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~ 222 (729)
.+..|+.+ ..+.+.+...++.+.+||+.+ |+....... +..+....||++|+.++++.++.-.. .+.
T Consensus 52 tGavW~~Did~~s~~liTGSAD~t~kLWDv~t--Gk~la~~k~----~~~Vk~~~F~~~gn~~l~~tD~~mg~----~~~ 121 (327)
T KOG0643|consen 52 TGAVWCCDIDWDSKHLITGSADQTAKLWDVET--GKQLATWKT----NSPVKRVDFSFGGNLILASTDKQMGY----TCF 121 (327)
T ss_pred CceEEEEEecCCcceeeeccccceeEEEEcCC--CcEEEEeec----CCeeEEEeeccCCcEEEEEehhhcCc----ceE
Confidence 35566665 225566666677889999998 543332222 23456667999999999988765333 255
Q ss_pred EEEEEcC-------CCc-eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCC
Q 004816 223 IVAIALN-------GQN-IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 294 (729)
Q Consensus 223 l~~~dl~-------~g~-~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~ 294 (729)
|.++++. +.+ ...+.......+..-|+|-|+.|.+.. ....|-.+|+. +|.. -+.......
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh--------e~G~is~~da~-~g~~-~v~s~~~h~- 190 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH--------EDGSISIYDAR-TGKE-LVDSDEEHS- 190 (327)
T ss_pred EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec--------CCCcEEEEEcc-cCce-eeechhhhc-
Confidence 6666665 334 234433445566788999999987654 23448889988 6642 122222233
Q ss_pred CccccccCceeCCCCcEEEEEecCCCceEEEEEEcCC
Q 004816 295 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 295 ~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~ 331 (729)
..+..+++|+|...+.++.. .....| +|..+
T Consensus 191 ---~~Ind~q~s~d~T~FiT~s~-Dttakl--~D~~t 221 (327)
T KOG0643|consen 191 ---SKINDLQFSRDRTYFITGSK-DTTAKL--VDVRT 221 (327)
T ss_pred ---cccccccccCCcceEEeccc-Ccccee--eeccc
Confidence 56778999999864444443 344444 35444
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.026 Score=58.43 Aligned_cols=254 Identities=11% Similarity=0.001 Sum_probs=129.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
+.+.++.|+- |..+.. .. .+|...||..+.. ....+ .. |.-.+.++-|.++ .-+.+...++.
T Consensus 236 kdVT~L~Wn~~G~~Lat-G~---~~G~~riw~~~G~---l~~tl-~~--------HkgPI~slKWnk~G~yilS~~vD~t 299 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLAT-GS---EDGEARIWNKDGN---LISTL-GQ--------HKGPIFSLKWNKKGTYILSGGVDGT 299 (524)
T ss_pred CCcceEEecCCCCeEEE-ee---cCcEEEEEecCch---hhhhh-hc--------cCCceEEEEEcCCCCEEEeccCCcc
Confidence 4567888886 444433 21 4677777754311 11111 11 1111223334433 33455566788
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeCCCeeee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSGSDFYAF 245 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~~~~~~~ 245 (729)
+.+||..+ ++..+..... ....-|..|--+.++. ++..+ ..|++.-++...+ +.+....+..+.
T Consensus 300 tilwd~~~--g~~~q~f~~~---s~~~lDVdW~~~~~F~--ts~td--------~~i~V~kv~~~~P~~t~~GH~g~V~a 364 (524)
T KOG0273|consen 300 TILWDAHT--GTVKQQFEFH---SAPALDVDWQSNDEFA--TSSTD--------GCIHVCKVGEDRPVKTFIGHHGEVNA 364 (524)
T ss_pred EEEEeccC--ceEEEeeeec---cCCccceEEecCceEe--ecCCC--------ceEEEEEecCCCcceeeecccCceEE
Confidence 99999887 6665544331 1111455675555432 22211 2355555544333 445555566788
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecC------C
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK------N 319 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~------~ 319 (729)
..|.|.|+.|+-.+ + ...|-++... .+.. ...+..+. ..+....|||+|.+....+.. .
T Consensus 365 lk~n~tg~LLaS~S-d-------D~TlkiWs~~-~~~~--~~~l~~Hs----kei~t~~wsp~g~v~~n~~~~~~l~sas 429 (524)
T KOG0273|consen 365 LKWNPTGSLLASCS-D-------DGTLKIWSMG-QSNS--VHDLQAHS----KEIYTIKWSPTGPVTSNPNMNLMLASAS 429 (524)
T ss_pred EEECCCCceEEEec-C-------CCeeEeeecC-CCcc--hhhhhhhc----cceeeEeecCCCCccCCCcCCceEEEee
Confidence 89999999888666 2 3446666544 2221 22233333 344567788877421111110 0
Q ss_pred CceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc
Q 004816 320 GFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
-...+-.+|...|... .++... .|.+ ++.|+ .++..+.+.+.+|..+|| +.+++++-+--.+..
T Consensus 430 ~dstV~lwdv~~gv~i~~f~kH~----~pVy-----svafS----~~g~ylAsGs~dg~V~iw--s~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 430 FDSTVKLWDVESGVPIHTLMKHQ----EPVY-----SVAFS----PNGRYLASGSLDGCVHIW--STKTGKLVKSYQGTG 494 (524)
T ss_pred cCCeEEEEEccCCceeEeeccCC----CceE-----EEEec----CCCcEEEecCCCCeeEec--cccchheeEeecCCC
Confidence 1123455677666544 333433 3333 34565 344555666678888887 455666554445555
Q ss_pred ceEEe
Q 004816 399 DIDNI 403 (729)
Q Consensus 399 ~v~~~ 403 (729)
.|..+
T Consensus 495 ~Ifel 499 (524)
T KOG0273|consen 495 GIFEL 499 (524)
T ss_pred eEEEE
Confidence 55555
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.039 Score=56.59 Aligned_cols=146 Identities=15% Similarity=0.105 Sum_probs=95.4
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceee-ecceecCCCCEEEEEEeccCCC---------CCC
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSY-ADGIFDPRFNRYVTVREDRRQD---------ALN 218 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~-~~~~~SPdG~~l~~~~~~~~~~---------~~~ 218 (729)
+|...++.+++.+ ..-.|+.++.++ +..+.++...++...++ ++..++|+|. |+|+....... ...
T Consensus 121 ~f~~~ggdL~VaD-AYlGL~~V~p~g--~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~ 196 (376)
T KOG1520|consen 121 RFDKKGGDLYVAD-AYLGLLKVGPEG--GLAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGD 196 (376)
T ss_pred EeccCCCeEEEEe-cceeeEEECCCC--CcceeccccccCeeeeecCceeEcCCCe-EEEeccccccchhheEEeeecCC
Confidence 4554454554443 333599999988 88888887654444444 7788999665 56664322111 122
Q ss_pred cceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecC-CCCCcc
Q 004816 219 STTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDPTIV 297 (729)
Q Consensus 219 ~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~-~~~~~~ 297 (729)
....|+.+|..+.+.+.|..+-.+.++.+.|||++.+.|+.... .+|..+=++ +.+......+.. .+
T Consensus 197 ~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~-------~ri~rywi~-g~k~gt~EvFa~~LP---- 264 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT-------ARIKRYWIK-GPKAGTSEVFAEGLP---- 264 (376)
T ss_pred CccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecc-------ceeeeeEec-CCccCchhhHhhcCC----
Confidence 35679999999888888888888999999999999999988432 235444444 332222234433 44
Q ss_pred ccccCceeCCCCc
Q 004816 298 ESPTEPKWSSKGE 310 (729)
Q Consensus 298 ~~~~~~~wspDG~ 310 (729)
++..+++-+++|.
T Consensus 265 G~PDNIR~~~~G~ 277 (376)
T KOG1520|consen 265 GYPDNIRRDSTGH 277 (376)
T ss_pred CCCcceeECCCCC
Confidence 5667888888887
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.02 Score=59.87 Aligned_cols=240 Identities=14% Similarity=0.057 Sum_probs=123.2
Q ss_pred EECCCCcEEEEeCCCCC---CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 160 SNYKDQRLYKHSIDSKD---SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 160 ~~~~~~~l~~~d~~~~~---~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
+...+-.+..||+++=+ ..-++|.+.+ ...++...|||.|.+|+++... .+.-++|.+|-+.-..
T Consensus 184 sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E---~h~i~sl~ys~Tg~~iLvvsg~---------aqakl~DRdG~~~~e~ 251 (641)
T KOG0772|consen 184 SGSLDYTVKFWDFQGMDASMRSFRQLQPCE---THQINSLQYSVTGDQILVVSGS---------AQAKLLDRDGFEIVEF 251 (641)
T ss_pred eccccceEEEEecccccccchhhhccCccc---ccccceeeecCCCCeEEEEecC---------cceeEEccCCceeeee
Confidence 33345578889987510 1234555542 3556788999999999988763 4566778877554444
Q ss_pred eeCC----------Ce---eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC-CCccccccC
Q 004816 237 VSGS----------DF---YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-PTIVESPTE 302 (729)
Q Consensus 237 t~~~----------~~---~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~-~~~~~~~~~ 302 (729)
..|. +. .+.-+|.|+.+..+.+...+ ..|.++++. +.+ ....++.... ......+..
T Consensus 252 ~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D-------gtlRiWdv~-~~k-~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 252 SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD-------GTLRIWDVN-NTK-SQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred eccchhhhhhhccCCceeeeeccccccCcccceEEecCC-------CcEEEEecC-Cch-hheeEEeeccCCCcccCcee
Confidence 3332 12 23448999999886655322 337777776 322 1222222211 011134456
Q ss_pred ceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEE
Q 004816 303 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 382 (729)
Q Consensus 303 ~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~ 382 (729)
-.|++||+++..... .|.-++|-..-.+-...-.... +... ..++..+.|.. +++.| .+...++.-.||-
T Consensus 323 C~~nrdg~~iAagc~-DGSIQ~W~~~~~~v~p~~~vk~-AH~~----g~~Itsi~FS~---dg~~L-lSRg~D~tLKvWD 392 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCL-DGSIQIWDKGSRTVRPVMKVKD-AHLP----GQDITSISFSY---DGNYL-LSRGFDDTLKVWD 392 (641)
T ss_pred eecCCCcchhhhccc-CCceeeeecCCcccccceEeee-ccCC----CCceeEEEecc---ccchh-hhccCCCceeeee
Confidence 689999995444443 4766776431111111111111 0100 01334556663 55544 4444566666775
Q ss_pred EECCCCceE---eeccCCcceEEeeeeCCEEEEEEeCCC---CCceEEEEEcCC
Q 004816 383 LDDFGHSLS---LLDIPFTDIDNITLGNDCLFVEGASGV---EPSSVAKVTLDD 430 (729)
Q Consensus 383 ~d~~~g~~~---~lt~~~~~v~~~~~~~~~~~~~~~~~~---~~~~ly~~d~~~ 430 (729)
+.--..-+. -|...+..-...++++.++++...+.. +++.|+.+|..+
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 432111111 112222222333566677777765543 234477776544
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0054 Score=60.98 Aligned_cols=219 Identities=10% Similarity=0.061 Sum_probs=110.4
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh-----hhHHHhhCCcEEEEecCCCCCCCchhHHHhh
Q 004816 469 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-----SIQYWTSRGWAFVDVNYGGSTGYGREFRERL 543 (729)
Q Consensus 469 G~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-----~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~ 543 (729)
-..+++.+.-.. .++.|++|-.|.-+- .....|.. ..+.+. ..|.++-+|.+|.-.-...+..
T Consensus 8 ~G~v~V~v~G~~--------~~~kp~ilT~HDvGl-Nh~scF~~ff~~~~m~~i~-~~f~i~Hi~aPGqe~ga~~~p~-- 75 (283)
T PF03096_consen 8 YGSVHVTVQGDP--------KGNKPAILTYHDVGL-NHKSCFQGFFNFEDMQEIL-QNFCIYHIDAPGQEEGAATLPE-- 75 (283)
T ss_dssp TEEEEEEEESS----------TTS-EEEEE--TT---HHHHCHHHHCSHHHHHHH-TTSEEEEEE-TTTSTT-----T--
T ss_pred ceEEEEEEEecC--------CCCCceEEEeccccc-cchHHHHHHhcchhHHHHh-hceEEEEEeCCCCCCCcccccc--
Confidence 346777676442 346899999998532 11221322 234443 4699999999986542222211
Q ss_pred ccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH---h-hh-----
Q 004816 544 LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML---R-AE----- 613 (729)
Q Consensus 544 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~---~-~~----- 613 (729)
.+..-.++++.+.+..+++...+ +.+.-+|--+|+++-.+++. +|+++.++|++++...-..+ . ..
T Consensus 76 --~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~ 151 (283)
T PF03096_consen 76 --GYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWL 151 (283)
T ss_dssp --T-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH---
T ss_pred --cccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhccc
Confidence 11112355555555555554333 57999999999999999888 99999999999886532211 1 00
Q ss_pred ------cchhhhhhhhhhcC----------------------Ch-------hhhhhcCcc-cccCCCCCCEEEEEeCCCC
Q 004816 614 ------THKFESRYIDNLVG----------------------SE-------KDYYEKSPI-NFVDKFSCPIILFQGLEDK 657 (729)
Q Consensus 614 ------~~~~~~~~~~~~~~----------------------~~-------~~~~~~sp~-~~~~~i~~PvL~i~G~~D~ 657 (729)
+.......+...++ ++ ..|..+..+ ...+...+|+|++.|+..+
T Consensus 152 L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp 231 (283)
T PF03096_consen 152 LYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSP 231 (283)
T ss_dssp ----CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTST
T ss_pred ccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCc
Confidence 01111111111221 10 011111111 1244556999999999876
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 658 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 658 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
. .+++.++..+|-. .+.+++.++++|=. ...+......+.+.=|++
T Consensus 232 ~--~~~vv~~ns~Ldp--~~ttllkv~dcGgl-V~eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 232 H--VDDVVEMNSKLDP--TKTTLLKVADCGGL-VLEEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp T--HHHHHHHHHHS-C--CCEEEEEETT-TT--HHHH-HHHHHHHHHHHHH
T ss_pred c--hhhHHHHHhhcCc--ccceEEEecccCCc-ccccCcHHHHHHHHHHHc
Confidence 5 4777888888854 47899999998653 233444455555444443
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0018 Score=70.96 Aligned_cols=195 Identities=15% Similarity=0.102 Sum_probs=112.8
Q ss_pred ccccCCceEEEE--C-CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCC
Q 004816 142 AQEYGGGAFRIF--G-DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (729)
Q Consensus 142 ~~~~~~~~~~~~--~-~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~ 218 (729)
+.+..+..|..+ + ++.+.+..++..+-+|.+++ .....+-.+ ....+++..|+|-|-+ |+...+..
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t--~s~~V~y~G---H~~PVwdV~F~P~GyY--Fatas~D~---- 515 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT--WSCLVIYKG---HLAPVWDVQFAPRGYY--FATASHDQ---- 515 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeeccc--ceeEEEecC---CCcceeeEEecCCceE--EEecCCCc----
Confidence 344455544432 2 24555666666666666665 333333222 1345688899999954 44333221
Q ss_pred cceEEEEEEcCCCceEEeeeCCCe-eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcc
Q 004816 219 STTEIVAIALNGQNIQVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 297 (729)
Q Consensus 219 ~~~~l~~~dl~~g~~~~lt~~~~~-~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~ 297 (729)
...||..|- ..+.++..+.-. ..-..|.|++.+++--+. ...+.++|+. +|.. ++++.++.
T Consensus 516 -tArLWs~d~--~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs--------D~tVRlWDv~-~G~~--VRiF~GH~---- 577 (707)
T KOG0263|consen 516 -TARLWSTDH--NKPLRIFAGHLSDVDCVSFHPNSNYVATGSS--------DRTVRLWDVS-TGNS--VRIFTGHK---- 577 (707)
T ss_pred -eeeeeeccc--CCchhhhcccccccceEEECCcccccccCCC--------CceEEEEEcC-CCcE--EEEecCCC----
Confidence 356776664 445555444332 333689999998874432 2347777888 6765 78888887
Q ss_pred ccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEE-eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 298 ~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
..+..+++||+|+.+..... . ..|.+||+.+|+... +......+ .++.|.. ++ .++++...+.
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~e-d--~~I~iWDl~~~~~v~~l~~Ht~ti---------~SlsFS~---dg-~vLasgg~Dn 641 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDE-D--GLIKIWDLANGSLVKQLKGHTGTI---------YSLSFSR---DG-NVLASGGADN 641 (707)
T ss_pred CceEEEEEcCCCceEeeccc-C--CcEEEEEcCCCcchhhhhcccCce---------eEEEEec---CC-CEEEecCCCC
Confidence 78889999999984434333 2 456677887765433 22222222 2344542 44 4555555555
Q ss_pred eEEEE
Q 004816 377 RSYLG 381 (729)
Q Consensus 377 ~~~ly 381 (729)
...||
T Consensus 642 sV~lW 646 (707)
T KOG0263|consen 642 SVRLW 646 (707)
T ss_pred eEEEE
Confidence 56666
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00027 Score=47.81 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=26.6
Q ss_pred EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEE
Q 004816 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV 274 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~ 274 (729)
++++........|.|||||++|+|++.... ....+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~---~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRND---RGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT-----SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCC---CCCcCEEC
Confidence 577777778889999999999999995442 13455764
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.03 Score=55.11 Aligned_cols=143 Identities=11% Similarity=0.025 Sum_probs=81.4
Q ss_pred CCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeCC
Q 004816 162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSGS 240 (729)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~~ 240 (729)
-.+|+|.+||+.+. +-.+.|+.. -..+...+||+||++|+..+.+. .+-.+|+-.|.+ +++- -.
T Consensus 42 c~nG~vvI~D~~T~-~iar~lsaH----~~pi~sl~WS~dgr~LltsS~D~---------si~lwDl~~gs~l~rir-f~ 106 (405)
T KOG1273|consen 42 CANGRVVIYDFDTF-RIARMLSAH----VRPITSLCWSRDGRKLLTSSRDW---------SIKLWDLLKGSPLKRIR-FD 106 (405)
T ss_pred ccCCcEEEEEcccc-chhhhhhcc----ccceeEEEecCCCCEeeeecCCc---------eeEEEeccCCCceeEEE-cc
Confidence 35788999999883 334555554 34568889999999988776543 467778877764 3332 22
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC-CCccccccCceeCCCCcEEEEEecCC
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-PTIVESPTEPKWSSKGELFFVTDRKN 319 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~-~~~~~~~~~~~wspDG~l~~~~~~~~ 319 (729)
....+..|.|-.+..+.+..-+ ..-++++++ ++. ..+++..+ .+-........+.+-|+.+++... .
T Consensus 107 spv~~~q~hp~k~n~~va~~~~-------~sp~vi~~s-~~~---h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts-K 174 (405)
T KOG1273|consen 107 SPVWGAQWHPRKRNKCVATIME-------ESPVVIDFS-DPK---HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS-K 174 (405)
T ss_pred CccceeeeccccCCeEEEEEec-------CCcEEEEec-CCc---eeeccCCCccccccccccccccCCCCEEEEecC-c
Confidence 2344567788544444443211 114566776 443 23333332 111122333457788886666655 4
Q ss_pred CceEEEEEEcCCCe
Q 004816 320 GFWNLHKWIESNNE 333 (729)
Q Consensus 320 g~~~l~~~d~~~g~ 333 (729)
|+ |.+++.++-+
T Consensus 175 Gk--llv~~a~t~e 186 (405)
T KOG1273|consen 175 GK--LLVYDAETLE 186 (405)
T ss_pred ce--EEEEecchhe
Confidence 54 4445655543
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00096 Score=72.91 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=80.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc----------------hhhhHHHhhCCcEEEEecCCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----------------NLSIQYWTSRGWAFVDVNYGG 531 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~----------------~~~~~~la~~G~~v~~~d~rG 531 (729)
.+..+..|++...+ ..+..|+|++++|||+....... ...-..|.+. ..++.+|.+-
T Consensus 59 ~~~~lFyw~~~s~~------~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~ 131 (462)
T PTZ00472 59 TDKHYFYWAFGPRN------GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPA 131 (462)
T ss_pred CCceEEEEEEEcCC------CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCC
Confidence 36778889988654 24567999999999986532210 0001123333 5678888643
Q ss_pred CCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh----CC-------CcceEEE
Q 004816 532 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA----FR-------DTFKAGA 599 (729)
Q Consensus 532 s~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~----~~-------~~~~a~v 599 (729)
+.|++..-... ....-....+|+..+++...++ +.....++.|+|+||||..+..++. +. -.+++++
T Consensus 132 G~G~S~~~~~~-~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~ 210 (462)
T PTZ00472 132 GVGFSYADKAD-YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLA 210 (462)
T ss_pred CcCcccCCCCC-CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEE
Confidence 24443321110 0000112367777777755443 4445689999999999998866664 11 1478999
Q ss_pred EeccccChh
Q 004816 600 SLYGVADLS 608 (729)
Q Consensus 600 ~~~~~~d~~ 608 (729)
+.+|+.|..
T Consensus 211 IGNg~~dp~ 219 (462)
T PTZ00472 211 VGNGLTDPY 219 (462)
T ss_pred EeccccChh
Confidence 999887653
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.04 Score=54.56 Aligned_cols=206 Identities=15% Similarity=0.143 Sum_probs=97.9
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
..+..+|.||.+.|+++.+.. ..|+.+++++.-.+.+. .+.+.+.+.++.-+|+++ ..+ .+ ..
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~--------~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~v-l~~-Er------~~ 86 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEP--------GEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYV-LSE-ER------DQ 86 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTT--------TEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEE-EEE-TT------TT
T ss_pred CccccEEcCCCCeEEEEECCC--------CEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEE-EEE-cC------CC
Confidence 368899999999988887654 57999999754445553 344556788888777533 333 22 24
Q ss_pred EEEEEEecCCC-Cee--e---eEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEc--CCCeEEEeeccC
Q 004816 271 ELWVGYISENG-DVY--K---RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE--SNNEVLAIYSLD 341 (729)
Q Consensus 271 ~l~~~d~~~~g-~~~--~---~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~--~~g~~~~l~~~~ 341 (729)
+|++++++..+ ... . ..+......+ ..+..++|++.++ |++...+ .-..||.++. ............
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N--~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGN--KGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---S--S--EEEEEETTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-HH
T ss_pred cEEEEEEeccccccchhhceEEecccccCCC--cceEEEEEcCCCCEEEEEeCC--CChhhEEEccccCccceeeccccc
Confidence 58888885222 111 1 1111111111 4567899999877 6655443 4466887775 222222211100
Q ss_pred ccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE--eeccCC-------cceEEeeeeCCEEEE
Q 004816 342 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS--LLDIPF-------TDIDNITLGNDCLFV 412 (729)
Q Consensus 342 ~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~--~lt~~~-------~~v~~~~~~~~~~~~ 412 (729)
.. .........+.+.+.+ ..+.+|+.+..+ ..|..+|.++..+. .|..+. ..-..+..+.+.-+|
T Consensus 163 ~~-~~~~~~~d~S~l~~~p---~t~~lliLS~es--~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 163 LD-DDKLFVRDLSGLSYDP---RTGHLLILSDES--RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp HH--HT--SS---EEEEET---TTTEEEEEETTT--TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred cc-cccceeccccceEEcC---CCCeEEEEECCC--CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 00 0111112233445543 566777776433 35666776655333 333322 123445333344555
Q ss_pred EEeCCCCCceEEEE
Q 004816 413 EGASGVEPSSVAKV 426 (729)
Q Consensus 413 ~~~~~~~~~~ly~~ 426 (729)
+.+.+ ...|++
T Consensus 237 IvsEp---Nlfy~f 247 (248)
T PF06977_consen 237 IVSEP---NLFYRF 247 (248)
T ss_dssp EEETT---TEEEEE
T ss_pred EEcCC---ceEEEe
Confidence 55543 466665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.028 Score=62.97 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=90.4
Q ss_pred ECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-eEEeee
Q 004816 161 NYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQVLVS 238 (729)
Q Consensus 161 ~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-~~~lt~ 238 (729)
...++.+-++..+. ++.. .|+.. .....+.+++-+|+.+++..++. .|-+++...+. .+.+-.
T Consensus 72 ~s~~~tv~~y~fps--~~~~~iL~Rf----tlp~r~~~v~g~g~~iaagsdD~---------~vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPS--GEEDTILARF----TLPIRDLAVSGSGKMIAAGSDDT---------AVKLLNLDDSSQEKVLRG 136 (933)
T ss_pred eeccceEEEeeCCC--CCccceeeee----eccceEEEEecCCcEEEeecCce---------eEEEEeccccchheeecc
Confidence 33455677777766 4443 33333 23457888999999999887753 47777776644 344444
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeE--EecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV--CVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~--~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
..+......++|.|+.||..+ .+..|++++++ ++.+.... +.+..+..-......++|+|+|. +++..
T Consensus 137 h~apVl~l~~~p~~~fLAvss--------~dG~v~iw~~~-~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSS--------CDGKVQIWDLQ-DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEe--------cCceEEEEEcc-cchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence 455677889999999999887 34559999998 67642211 11111100003346789999966 76665
Q ss_pred ecCCCceEEEEEEcCCCeE
Q 004816 316 DRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 316 ~~~~g~~~l~~~d~~~g~~ 334 (729)
.+ ..+-+++..+.+.
T Consensus 208 ~d----~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 208 VD----NTVKVYSRKGWEL 222 (933)
T ss_pred cC----CeEEEEccCCcee
Confidence 44 2355556666543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.025 Score=67.13 Aligned_cols=193 Identities=10% Similarity=0.032 Sum_probs=103.8
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc---------eEEeeeCCCeeeeeeeCCC-CCeEEEEEe
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN---------IQVLVSGSDFYAFPRMDPR-GERMAWIEW 260 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~---------~~~lt~~~~~~~~~~~SPD-G~~la~~~~ 260 (729)
..+...+|+|||+.++....+ ..|.++++.+.. ...+ .+.......+|+|. +++|+..+
T Consensus 484 ~~V~~i~fs~dg~~latgg~D---------~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~- 552 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVN---------KKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSN- 552 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCC---------CEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEe-
Confidence 446778899999987665543 357777764310 1111 12234456789874 66665444
Q ss_pred cCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC-CCcEEEEEecCCCceEEEEEEcCCCeEEEeec
Q 004816 261 HHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYS 339 (729)
Q Consensus 261 ~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp-DG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~ 339 (729)
....|.++|+. +++. ...+.+.. ..+..+.|+| |+.++++... .+. +.++|+.+++......
T Consensus 553 -------~Dg~v~lWd~~-~~~~--~~~~~~H~----~~V~~l~~~p~~~~~L~Sgs~-Dg~--v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 553 -------FEGVVQVWDVA-RSQL--VTEMKEHE----KRVWSIDYSSADPTLLASGSD-DGS--VKLWSINQGVSIGTIK 615 (793)
T ss_pred -------CCCeEEEEECC-CCeE--EEEecCCC----CCEEEEEEcCCCCCEEEEEcC-CCE--EEEEECCCCcEEEEEe
Confidence 23458889988 5543 44455554 5677889997 6666555544 344 5556776665432222
Q ss_pred cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc--eEeeccCCcceEEe-eeeCCEEEEEEeC
Q 004816 340 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS--LSLLDIPFTDIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 340 ~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~--~~~lt~~~~~v~~~-~~~~~~~~~~~~~ 416 (729)
....+. .+.|.+ +++.++++...+|...+ +|+..+. ...+......+..+ ..+ +..++.++.
T Consensus 616 ~~~~v~---------~v~~~~---~~g~~latgs~dg~I~i--wD~~~~~~~~~~~~~h~~~V~~v~f~~-~~~lvs~s~ 680 (793)
T PLN00181 616 TKANIC---------CVQFPS---ESGRSLAFGSADHKVYY--YDLRNPKLPLCTMIGHSKTVSYVRFVD-SSTLVSSST 680 (793)
T ss_pred cCCCeE---------EEEEeC---CCCCEEEEEeCCCeEEE--EECCCCCccceEecCCCCCEEEEEEeC-CCEEEEEEC
Confidence 111111 223321 33445556666675444 5665443 23344444456666 333 344444443
Q ss_pred CCCCceEEEEEcC
Q 004816 417 GVEPSSVAKVTLD 429 (729)
Q Consensus 417 ~~~~~~ly~~d~~ 429 (729)
. ..+.++|+.
T Consensus 681 D---~~ikiWd~~ 690 (793)
T PLN00181 681 D---NTLKLWDLS 690 (793)
T ss_pred C---CEEEEEeCC
Confidence 3 245555654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0038 Score=63.28 Aligned_cols=264 Identities=11% Similarity=0.039 Sum_probs=141.2
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccc--ccccCCceEEEECC-EEEEEECCCCc
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTT--AQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
+..++|.| |+++.-=. ..|...||.-.. ++.... -|.+...+..++.+ .-+++.+.++-
T Consensus 99 V~~v~WtPeGRRLltgs----~SGEFtLWNg~~-------------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGS----QSGEFTLWNGTS-------------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred eeeEEEcCCCceeEeec----ccccEEEecCce-------------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCce
Confidence 45788998 77664422 456677775311 111111 12233333444322 23345555667
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-eEEeeeCCCeeee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQVLVSGSDFYAF 245 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-~~~lt~~~~~~~~ 245 (729)
|-.|++.- ..++.+... ....+.+.+|||.....+-.+++ +.|-++|..-.+ +++|.........
T Consensus 162 iKyWqpnm--nnVk~~~ah---h~eaIRdlafSpnDskF~t~SdD---------g~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 162 IKYWQPNM--NNVKIIQAH---HAEAIRDLAFSPNDSKFLTCSDD---------GTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred EEecccch--hhhHHhhHh---hhhhhheeccCCCCceeEEecCC---------CeEEEEeccCCchhheeccCCCCcce
Confidence 77777653 333333322 12456889999966543433333 457777876544 4555433334567
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNL 324 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l 324 (729)
..|.|.-..| +...++ .-|-++|.. +|+. +..+.... ..+..+.|+++|. |+-.+.+ ..+
T Consensus 228 vdWHP~kgLi-asgskD-------nlVKlWDpr-Sg~c--l~tlh~HK----ntVl~~~f~~n~N~Llt~skD----~~~ 288 (464)
T KOG0284|consen 228 VDWHPTKGLI-ASGSKD-------NLVKLWDPR-SGSC--LATLHGHK----NTVLAVKFNPNGNWLLTGSKD----QSC 288 (464)
T ss_pred eccCCcccee-EEccCC-------ceeEeecCC-Ccch--hhhhhhcc----ceEEEEEEcCCCCeeEEccCC----ceE
Confidence 8999975544 444232 247788877 6654 44555555 6677889999998 4433332 356
Q ss_pred EEEEcCCCe-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec-cCCcceEE
Q 004816 325 HKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD-IPFTDIDN 402 (729)
Q Consensus 325 ~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt-~~~~~v~~ 402 (729)
-++|..+-+ ....-....++....|.|.. ..|+.+...+|....|.+++. ..+-.+. ..+..|.+
T Consensus 289 kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~------------~~lftsgg~Dgsvvh~~v~~~-~p~~~i~~AHd~~iws 355 (464)
T KOG0284|consen 289 KVFDIRTMKELFTYRGHKKDVTSLTWHPLN------------ESLFTSGGSDGSVVHWVVGLE-EPLGEIPPAHDGEIWS 355 (464)
T ss_pred EEEehhHhHHHHHhhcchhhheeecccccc------------ccceeeccCCCceEEEecccc-ccccCCCcccccceee
Confidence 677876422 22222344466677888742 335555555666555555421 1111111 12345666
Q ss_pred e-eeeCCEEEEEEeCC
Q 004816 403 I-TLGNDCLFVEGASG 417 (729)
Q Consensus 403 ~-~~~~~~~~~~~~~~ 417 (729)
+ ..+=+.+++.++++
T Consensus 356 l~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 356 LAYHPLGHILATGSND 371 (464)
T ss_pred eeccccceeEeecCCC
Confidence 6 45556677665443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.12 Score=55.33 Aligned_cols=205 Identities=14% Similarity=0.076 Sum_probs=119.2
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
.....+++|++++....+ ...+.++|.++.....-. -+. .-.+..++|||++++...... .+..+
T Consensus 77 ~~i~v~~~~~~vyv~~~~--------~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~-----~~~~v 142 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGD--------SNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGN-----GNNTV 142 (381)
T ss_pred cceeeCCCCCeEEEecCC--------CCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEeccc-----CCceE
Confidence 566789999986544332 256889997665443222 222 334578999999998776322 24568
Q ss_pred EEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccC--ccccCCccc
Q 004816 273 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSRPLWV 350 (729)
Q Consensus 273 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~--~~~~~~~w~ 350 (729)
.++|.. +++.... ...+. .....+.+|||+.+|+.+. +...|..+|.++....+ .... .....-
T Consensus 143 svid~~-t~~~~~~-~~vG~------~P~~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~--- 208 (381)
T COG3391 143 SVIDAA-TNKVTAT-IPVGN------TPTGVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVR-GSVGSLVGVGTG--- 208 (381)
T ss_pred EEEeCC-CCeEEEE-EecCC------CcceEEECCCCCeEEEEec--CCCeEEEEeCCCcceec-cccccccccCCC---
Confidence 888877 5554332 33332 2267889999995555553 45678888877665553 2100 001111
Q ss_pred ccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC--CcceEEe-eeeCCEEEEEEeCCCCCceEEEEE
Q 004816 351 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 351 ~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
.....+.+ ++..+|..-..+....+..+|..++........ ......+ ..+++..+|..... ...++.+|
T Consensus 209 --P~~i~v~~---~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~--~~~V~vid 281 (381)
T COG3391 209 --PAGIAVDP---DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ--GGTVSVID 281 (381)
T ss_pred --CceEEECC---CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC--CCeEEEEe
Confidence 11223332 777777776655556888899988887665322 2111222 33444444444333 45788888
Q ss_pred cCCCcc
Q 004816 428 LDDHKL 433 (729)
Q Consensus 428 ~~~~~~ 433 (729)
......
T Consensus 282 ~~~~~v 287 (381)
T COG3391 282 GATDRV 287 (381)
T ss_pred CCCCce
Confidence 776654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.046 Score=56.13 Aligned_cols=244 Identities=13% Similarity=0.091 Sum_probs=127.6
Q ss_pred CCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 146 ~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
|+.++.+.+. ..+.+...+..+.++|... ++.-.+-.+ ......+..++|+-..++-.+.+ ..|+
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s--~q~l~~~~G---h~kki~~v~~~~~~~~v~~aSad---------~~i~ 286 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPS--NQILATLKG---HTKKITSVKFHKDLDTVITASAD---------EIIR 286 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecch--hhhhhhccC---cceEEEEEEeccchhheeecCCc---------ceEE
Confidence 4444444432 2333433444677777665 332222222 14567788899988865433322 3466
Q ss_pred EEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec--CCCCCcccccc
Q 004816 225 AIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA--GFDPTIVESPT 301 (729)
Q Consensus 225 ~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~--~~~~~~~~~~~ 301 (729)
++........ .+-......++....|.|++|...+. + ....-.|+. +|.. ..... ..+ ....
T Consensus 287 vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~-d-------~~w~Fsd~~-~g~~--lt~vs~~~s~----v~~t 351 (506)
T KOG0289|consen 287 VWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN-D-------GTWAFSDIS-SGSQ--LTVVSDETSD----VEYT 351 (506)
T ss_pred eeccccccCccccccccccceeeeeccCCcEEEEecC-C-------ceEEEEEcc-CCcE--EEEEeecccc----ceeE
Confidence 6555433322 22333445667778899998887762 2 223334555 5543 22222 222 4567
Q ss_pred CceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEE
Q 004816 302 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 381 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly 381 (729)
..++.||| ++|.....++.-. ++|+..+. .+...+. -.-....+.|. ++++.+.+..+++...||
T Consensus 352 s~~fHpDg-Lifgtgt~d~~vk--iwdlks~~--~~a~Fpg------ht~~vk~i~Fs----ENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 352 SAAFHPDG-LIFGTGTPDGVVK--IWDLKSQT--NVAKFPG------HTGPVKAISFS----ENGYWLATAADDGSVKLW 416 (506)
T ss_pred EeeEcCCc-eEEeccCCCceEE--EEEcCCcc--ccccCCC------CCCceeEEEec----cCceEEEEEecCCeEEEE
Confidence 78899999 5555443245444 45665543 2222111 11123455665 677777777777876666
Q ss_pred EEECCCCceEeeccC-CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 382 ILDDFGHSLSLLDIP-FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 382 ~~d~~~g~~~~lt~~-~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
-+. +....+.++.+ ...+..+ .+..+.++.+++ ..-.+|.+.-.+.+.+.+.
T Consensus 417 DLR-Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g---~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 417 DLR-KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG---SDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred Eeh-hhcccceeeccccccceeEEEcCCCCeEEeec---ceeEEEEEecccccceeee
Confidence 432 12233333332 2356666 444555555553 3346888876666655443
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.02 Score=56.34 Aligned_cols=130 Identities=9% Similarity=0.020 Sum_probs=84.2
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-----hhhhHHHhhCCcEEEEecCCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-----NLSIQYWTSRGWAFVDVNYGGS 532 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-----~~~~~~la~~G~~v~~~d~rGs 532 (729)
.++..+.+. . ..+++.++-..+ ++.|+++-.|.-.-.. ...| .+.++.+..+ |.|+-+|.+|.
T Consensus 22 ~~e~~V~T~-~-G~v~V~V~Gd~~--------~~kpaiiTyhDlglN~-~scFq~ff~~p~m~ei~~~-fcv~HV~~PGq 89 (326)
T KOG2931|consen 22 CQEHDVETA-H-GVVHVTVYGDPK--------GNKPAIITYHDLGLNH-KSCFQGFFNFPDMAEILEH-FCVYHVDAPGQ 89 (326)
T ss_pred ceeeeeccc-c-ccEEEEEecCCC--------CCCceEEEecccccch-HhHhHHhhcCHhHHHHHhh-eEEEecCCCcc
Confidence 456666665 3 557777775432 3568899999853221 1112 2345667777 99999999874
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
-.-.. .....+..-.++|+.+.+-.+++... -+-|.-+|--+|+++-.++|. ||+++-+.|++++..
T Consensus 90 e~gAp----~~p~~y~yPsmd~LAd~l~~VL~~f~--lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~ 157 (326)
T KOG2931|consen 90 EDGAP----SFPEGYPYPSMDDLADMLPEVLDHFG--LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDP 157 (326)
T ss_pred ccCCc----cCCCCCCCCCHHHHHHHHHHHHHhcC--cceEEEecccccHHHHHHHHhcChhheeEEEEEecCC
Confidence 32111 11222222336666666666655533 367888999999999999887 999999999998754
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.16 Score=58.21 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=106.1
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
.++|+++.. +....+... ..++..+.++++++.++.+.......+ .....+.....++.+..++.+.....
T Consensus 149 ~~l~~~d~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (620)
T COG1506 149 SDLYVVDIE---SKLIKLGLG----NLDVVSFATDGDGRLVASIRLDDDADP--WVTNLYVLIEGNGELESLTPGEGSIS 219 (620)
T ss_pred cceEEEccC---cccccccCC----CCceeeeeeCCCCceeEEeeeccccCC--ceEeeEEEecCCCceEEEcCCCceee
Confidence 378888875 223333333 355677778888887766655443111 12344444446788888888877788
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN 323 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~ 323 (729)
.+.|.+||+.+++........-+....+++++.+ .+.... .+....+ . .......+.-++. ++|......+...
T Consensus 220 ~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~-~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (620)
T COG1506 220 KLAFDADGKSIALLGTESDRGLAEGDFILLLDGE-LGEVDG-DLSSGDD-T--RGAWAVEGGLDGDGLLFIATDGGGSSP 294 (620)
T ss_pred eeeeCCCCCeeEEeccCCccCccccceEEEEecc-ccccce-eeccCCc-c--cCcHHhccccCCCcEEEEEecCCCceE
Confidence 8999999999999986665322234556776633 344322 0111100 0 1111122223444 7776665356777
Q ss_pred EEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEE-CCeEEEEEEEC
Q 004816 324 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ-NGRSYLGILDD 385 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~-~g~~~ly~~d~ 385 (729)
++.++..++....+......+. .+. + +++.+++.... .....+|.++.
T Consensus 295 l~~~~~~~~~~~~~~~~~~~v~--~f~-------~-----~~~~~~~~~s~~~~p~~i~~~~~ 343 (620)
T COG1506 295 LFRVDDLGGGVEGLSGDDGGVP--GFD-------V-----DGRKLALAYSSPTEPPEIYLYDR 343 (620)
T ss_pred EEEEeccCCceeeecCCCceEE--EEe-------e-----CCCEEEEEecCCCCccceEEEcC
Confidence 7777654544333332212211 111 1 45556555544 44678888876
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0043 Score=59.43 Aligned_cols=204 Identities=19% Similarity=0.174 Sum_probs=110.7
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCC-----cEEEEecCCCCCCCchhHHHhh-cc------CCCccc----HHH
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRG-----WAFVDVNYGGSTGYGREFRERL-LG------RWGIVD----VND 554 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G-----~~v~~~d~rGs~g~g~~~~~~~-~~------~~~~~~----~~D 554 (729)
..| .+++||..+. ...+..++..+...+ -.++.+|--|+--......... ++ .-+... ..=
T Consensus 45 ~iP-TIfIhGsgG~--asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIP-TIFIHGSGGT--ASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccc-eEEEecCCCC--hhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 345 5668997443 344555666666654 4567777766432111111110 00 001111 233
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-------CCCcceEEEEeccccChhHHhhhcchhhhhhh-hhh-
Q 004816 555 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-------FRDTFKAGASLYGVADLSMLRAETHKFESRYI-DNL- 625 (729)
Q Consensus 555 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-------~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~-~~~- 625 (729)
+..++.+|.++..+ .++-++||||||.....++. .| .++..|++.+.++......... . ..+. ..+
T Consensus 122 lk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P-~lnK~V~l~gpfN~~~l~~de~-v-~~v~~~~~~ 196 (288)
T COG4814 122 LKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLP-PLNKLVSLAGPFNVGNLVPDET-V-TDVLKDGPG 196 (288)
T ss_pred HHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCc-chhheEEecccccccccCCCcc-h-heeeccCcc
Confidence 56778888888665 68999999999998888774 24 4677777777666211111100 0 0000 000
Q ss_pred -cCCh-hhhhhcCcccccCCC--CCCEEEEEeCCC------CCCChHHHHHHHHHHHhCCCCEEEEEECC--CCcccCCc
Q 004816 626 -VGSE-KDYYEKSPINFVDKF--SCPIILFQGLED------KVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKA 693 (729)
Q Consensus 626 -~~~~-~~~~~~sp~~~~~~i--~~PvL~i~G~~D------~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~ 693 (729)
...+ ..|... ....+ ..-+|+|.|+-| -.||...+...+..+..+++...-.+|+| +.|.-. +
T Consensus 197 ~~~t~y~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~l-h 271 (288)
T COG4814 197 LIKTPYYDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKDARHSKL-H 271 (288)
T ss_pred ccCcHHHHHHHh----cceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCcchhhcc-C
Confidence 0000 111111 01111 356899999765 46889999999999998887666556665 467522 2
Q ss_pred ccHHHHHHHHHHHHH
Q 004816 694 ENIKFTLEQQMVFFA 708 (729)
Q Consensus 694 ~~~~~~~~~~~~fl~ 708 (729)
++ ....+.+..||-
T Consensus 272 en-~~v~~yv~~FLw 285 (288)
T COG4814 272 EN-PTVAKYVKNFLW 285 (288)
T ss_pred CC-hhHHHHHHHHhh
Confidence 22 344555666664
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.045 Score=54.32 Aligned_cols=195 Identities=15% Similarity=0.089 Sum_probs=98.3
Q ss_pred cCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCe-eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEe
Q 004816 199 DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI 277 (729)
Q Consensus 199 SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~-~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~ 277 (729)
.++++.|+.. .. ...|+.+|..+|+..--...... ...| ..++..|++.. ....|+.+|.
T Consensus 33 ~~~~~~v~~~-~~--------~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~v~v~~--------~~~~l~~~d~ 93 (238)
T PF13360_consen 33 VPDGGRVYVA-SG--------DGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGGRVYVGT--------SDGSLYALDA 93 (238)
T ss_dssp EEETTEEEEE-ET--------TSEEEEEETTTSEEEEEEECSSCGGSGE--EEETTEEEEEE--------TTSEEEEEET
T ss_pred EEeCCEEEEE-cC--------CCEEEEEECCCCCEEEEeecccccccee--eeccccccccc--------ceeeeEeccc
Confidence 3466765544 22 26899999988876432222222 2223 33566676665 1236999998
Q ss_pred cCCCCeeee-EEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCc-cccCCcc--ccc
Q 004816 278 SENGDVYKR-VCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRPLW--VFG 352 (729)
Q Consensus 278 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~-~~~~~~w--~~~ 352 (729)
. +|+..+. ....... . ..........++. +++... ...|+.+|+++|+..--..... ....+.. ...
T Consensus 94 ~-tG~~~W~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 165 (238)
T PF13360_consen 94 K-TGKVLWSIYLTSSPP-A--GVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI 165 (238)
T ss_dssp T-TSCEEEEEEE-SSCT-C--STB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTE
T ss_pred C-Ccceeeeeccccccc-c--ccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEeecCCCCCCcceeeeccc
Confidence 8 8887655 2322211 0 1112223333455 444432 2468999999997643221111 1000000 000
Q ss_pred CcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEE-eeeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 353 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 353 ~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~-~~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
.....+ .++.+|+.. .++. ++.+|..+++.. -......... ...+++.+++.. . ...++.+|+++|
T Consensus 166 ~~~~~~-----~~~~v~~~~-~~g~--~~~~d~~tg~~~-w~~~~~~~~~~~~~~~~~l~~~~-~---~~~l~~~d~~tG 232 (238)
T PF13360_consen 166 NGSPVI-----SDGRVYVSS-GDGR--VVAVDLATGEKL-WSKPISGIYSLPSVDGGTLYVTS-S---DGRLYALDLKTG 232 (238)
T ss_dssp EEEEEC-----CTTEEEEEC-CTSS--EEEEETTTTEEE-EEECSS-ECECEECCCTEEEEEE-T---TTEEEEEETTTT
T ss_pred ccceEE-----ECCEEEEEc-CCCe--EEEEECCCCCEE-EEecCCCccCCceeeCCEEEEEe-C---CCEEEEEECCCC
Confidence 011111 334555443 3443 666699988844 2333333444 245555555444 3 368999999999
Q ss_pred cc
Q 004816 432 KL 433 (729)
Q Consensus 432 ~~ 433 (729)
+.
T Consensus 233 ~~ 234 (238)
T PF13360_consen 233 KV 234 (238)
T ss_dssp EE
T ss_pred CE
Confidence 73
|
... |
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0013 Score=64.54 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=59.7
Q ss_pred CEEEEEcCCCCCCccccchhhhHHH--------hhCCcEEEEecCCCCCC--CchhHHHhhccCCCcccHHHHHHHHHHH
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYW--------TSRGWAFVDVNYGGSTG--YGREFRERLLGRWGIVDVNDCCSCATFL 562 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~l--------a~~G~~v~~~d~rGs~g--~g~~~~~~~~~~~~~~~~~D~~~~~~~l 562 (729)
..|||+||..++.. .+..+...+ ....+.++.+||..... +|.... ...+-+..+++++
T Consensus 5 ~pVlFIhG~~Gs~~--q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~l~---------~q~~~~~~~i~~i 73 (225)
T PF07819_consen 5 IPVLFIHGNAGSYK--QVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRTLQ---------RQAEFLAEAIKYI 73 (225)
T ss_pred CEEEEECcCCCCHh--HHHHHHHHHhhhhhhccCccceeEEEeccCccccccccccHH---------HHHHHHHHHHHHH
Confidence 45899999644321 222222222 22358899999864221 121111 1123355566666
Q ss_pred HhCC---CCCCCcEEEEEcChHHHHHHHHHhC----CCcceEEEEeccc
Q 004816 563 VGSG---KADEKRLCITGGSAGGYTTLAALAF----RDTFKAGASLYGV 604 (729)
Q Consensus 563 ~~~~---~~d~~ri~i~G~S~GG~~a~~~~~~----~~~~~a~v~~~~~ 604 (729)
.+.. ...+++|.|+||||||.++-.++.. ++.++.+|.++..
T Consensus 74 ~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tP 122 (225)
T PF07819_consen 74 LELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTP 122 (225)
T ss_pred HHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCC
Confidence 5543 3467899999999999999888762 3468888876543
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.004 Score=64.45 Aligned_cols=150 Identities=7% Similarity=0.006 Sum_probs=95.3
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
|.+....|+.+...++.|++|++-+..+-.+..... ...+.+.+||.+|..++-+.-+ ..|-++|.+
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH----~k~Vrd~~~s~~g~~fLS~sfD---------~~lKlwDtE 288 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH----RKPVRDASFNNCGTSFLSASFD---------RFLKLWDTE 288 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecCcceehhhhcc----hhhhhhhhccccCCeeeeeecc---------eeeeeeccc
Confidence 444455788888888999999986410222222222 3456889999999987766554 357788999
Q ss_pred CCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 230 GQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 230 ~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
+|+..+-........-..+.||+..++++... +..|..+|+. +|++.+ -....- +.+..+.|-++|
T Consensus 289 TG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~s-------d~ki~~wDiR-s~kvvq--eYd~hL----g~i~~i~F~~~g 354 (503)
T KOG0282|consen 289 TGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGS-------DKKIRQWDIR-SGKVVQ--EYDRHL----GAILDITFVDEG 354 (503)
T ss_pred cceEEEEEecCCCceeeecCCCCCcEEEEecC-------CCcEEEEecc-chHHHH--HHHhhh----hheeeeEEccCC
Confidence 99876543333334446789999888777743 3458889988 676421 111111 345567888999
Q ss_pred c-EEEEEecCCCceEEEEEE
Q 004816 310 E-LFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 310 ~-l~~~~~~~~g~~~l~~~d 328 (729)
+ ++-.++ .+...||-+.
T Consensus 355 ~rFissSD--dks~riWe~~ 372 (503)
T KOG0282|consen 355 RRFISSSD--DKSVRIWENR 372 (503)
T ss_pred ceEeeecc--CccEEEEEcC
Confidence 8 444444 3555666443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.054 Score=53.39 Aligned_cols=207 Identities=13% Similarity=0.099 Sum_probs=107.5
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
.+++.+|+||.+.|+.+.+.. ..|.-++.+|.-.+.+.- +-.......|.-+|++++. ++. ..
T Consensus 87 nvS~LTynp~~rtLFav~n~p--------~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~---dER-----~~ 150 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKP--------AAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIV---DER-----DR 150 (316)
T ss_pred cccceeeCCCcceEEEecCCC--------ceEEEEecCCceEEEecccccCChhHeEEecCCEEEEE---ehh-----cc
Confidence 368899999999977665543 578888888655565532 2222334577777775432 222 34
Q ss_pred EEEEEEecCCCCeee-----eEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCe-EEEeeccCcc
Q 004816 271 ELWVGYISENGDVYK-----RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAE 343 (729)
Q Consensus 271 ~l~~~d~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~ 343 (729)
+|+++.++.++.... +.+......+ .+..+.+|+|+.+ +++...+ .-..||.++-.... ...+.... .
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N--~GfEGlA~d~~~~~l~~aKEr--~P~~I~~~~~~~~~l~~~~~~~~-~ 225 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKN--KGFEGLAWDPVDHRLFVAKER--NPIGIFEVTQSPSSLSVHASLDP-T 225 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCC--cCceeeecCCCCceEEEEEcc--CCcEEEEEecCCcccccccccCc-c
Confidence 577777764333211 1111111101 5677899999988 6666554 55677777632211 11111110 1
Q ss_pred ccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee--ccCCc-------ceEEeeeeCCEEEEEE
Q 004816 344 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL--DIPFT-------DIDNITLGNDCLFVEG 414 (729)
Q Consensus 344 ~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l--t~~~~-------~v~~~~~~~~~~~~~~ 414 (729)
....-+....+.+.|-+ ..+.+++.+.++. .|..++.++.-+..+ +.+.. ....+..|+...+|+.
T Consensus 226 ~~~~~f~~DvSgl~~~~---~~~~LLVLS~ESr--~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 226 ADRDLFVLDVSGLEFNA---ITNSLLVLSDESR--RLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred cccceEeeccccceecC---CCCcEEEEecCCc--eEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 11122333444555532 3556666665433 455666665543332 33322 2334445555555666
Q ss_pred eCCCCCceEEEEE
Q 004816 415 ASGVEPSSVAKVT 427 (729)
Q Consensus 415 ~~~~~~~~ly~~d 427 (729)
+.++ -.|++.
T Consensus 301 SEPn---lfy~F~ 310 (316)
T COG3204 301 SEPN---LFYRFT 310 (316)
T ss_pred ecCC---cceecc
Confidence 5443 455543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.016 Score=58.20 Aligned_cols=151 Identities=9% Similarity=-0.037 Sum_probs=92.4
Q ss_pred EECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCC--CceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE--PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 152 ~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~--~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
...++++..- ..+||++|+.. .+.|..-+.. .+......+.++.+.+++|-.... ..+|+++|+.
T Consensus 95 mNr~RLvV~L--ee~IyIydI~~----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-------~GdV~l~d~~ 161 (391)
T KOG2110|consen 95 MNRKRLVVCL--EESIYIYDIKD----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-------SGDVVLFDTI 161 (391)
T ss_pred EccceEEEEE--cccEEEEeccc----ceeehhhhccCCCccceEeeccCCCCceEEecCCCC-------CceEEEEEcc
Confidence 3455665553 33499999975 3444322111 123445556666777888875443 3679999987
Q ss_pred CCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 230 GQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 230 ~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
+-+.. .+....+.....+|||||..||-.+ + .++-|.|+.+. +|+. ..-+...-. ...+..++|+||
T Consensus 162 nl~~v~~I~aH~~~lAalafs~~G~llATAS-e------KGTVIRVf~v~-~G~k--l~eFRRG~~--~~~IySL~Fs~d 229 (391)
T KOG2110|consen 162 NLQPVNTINAHKGPLAALAFSPDGTLLATAS-E------KGTVIRVFSVP-EGQK--LYEFRRGTY--PVSIYSLSFSPD 229 (391)
T ss_pred cceeeeEEEecCCceeEEEECCCCCEEEEec-c------CceEEEEEEcC-CccE--eeeeeCCce--eeEEEEEEECCC
Confidence 74443 3344556677789999999999666 2 24557888887 6653 222221110 045567899999
Q ss_pred Cc-EEEEEecCCCceEEEEEEc
Q 004816 309 GE-LFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 309 G~-l~~~~~~~~g~~~l~~~d~ 329 (729)
++ |...++ .+.-+|++++-
T Consensus 230 s~~L~~sS~--TeTVHiFKL~~ 249 (391)
T KOG2110|consen 230 SQFLAASSN--TETVHIFKLEK 249 (391)
T ss_pred CCeEEEecC--CCeEEEEEecc
Confidence 99 554444 46777887764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.14 Score=50.82 Aligned_cols=146 Identities=11% Similarity=0.095 Sum_probs=82.1
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCC--CCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC-CCc
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG--EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQN 232 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~--~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~-~g~ 232 (729)
.++.++.++.-|.+||.-+ |+.+.--...+ .+-...-...|||||.+|++--. ..|-++|+. .|.
T Consensus 124 ~l~a~ssr~~PIh~wdaft--G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk----------rcirvFdt~RpGr 191 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFT--GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK----------RCIRVFDTSRPGR 191 (406)
T ss_pred ceeeeccccCceeeeeccc--cccccchhhhhhHHhhhhheeEEecCCCCeEeeccc----------ceEEEeeccCCCC
Confidence 3444555566788888877 55432111100 00011145679999999765422 446677763 232
Q ss_pred -eE---EeeeC----CCeeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 233 -IQ---VLVSG----SDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 233 -~~---~lt~~----~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
.. .++.+ .+..+-.++|| |.+.+++-+... .+-++.-. ++. +..++-+.. .++..+
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q--------~~giy~~~-~~~--pl~llggh~----gGvThL 256 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ--------RVGIYNDD-GRR--PLQLLGGHG----GGVTHL 256 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccc--------eeeeEecC-CCC--ceeeecccC----CCeeeE
Confidence 11 22222 24556678999 666777766332 23344333 333 355666666 889999
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEEcC
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d~~ 330 (729)
+|-+||.-+|...+ ....|..+|+.
T Consensus 257 ~~~edGn~lfsGaR--k~dkIl~WDiR 281 (406)
T KOG2919|consen 257 QWCEDGNKLFSGAR--KDDKILCWDIR 281 (406)
T ss_pred EeccCcCeeccccc--CCCeEEEEeeh
Confidence 99999995555544 23456666664
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0042 Score=61.32 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCc--EEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW--AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~--~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
....++|++||.-.. ........+|.....|+ .++.+..+..+. -..|..... -......++...++.|.+.
T Consensus 16 ~~~~vlvfVHGyn~~-f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~-~~~Y~~d~~--~a~~s~~~l~~~L~~L~~~-- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNS-FEDALRRAAQLAHDLGFPGVVILFSWPSDGS-LLGYFYDRE--SARFSGPALARFLRDLARA-- 89 (233)
T ss_pred CCCeEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCceEEEEEcCCCCC-hhhhhhhhh--hHHHHHHHHHHHHHHHHhc--
Confidence 345799999997322 22223334454444444 688888875433 222221111 1112355666677777665
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh----C-C-----CcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCc
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA----F-R-----DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSP 637 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~----~-~-----~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 637 (729)
....+|.|++||||+.+.+.++. . . .+|..+++.+|-.+...+.....
T Consensus 90 ~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f~~~~~---------------------- 147 (233)
T PF05990_consen 90 PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVFRSQLP---------------------- 147 (233)
T ss_pred cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHHHHHHH----------------------
Confidence 23579999999999999988864 1 1 26778888888777654322110
Q ss_pred ccccCCCCCCEEEEEeCCCCCC
Q 004816 638 INFVDKFSCPIILFQGLEDKVV 659 (729)
Q Consensus 638 ~~~~~~i~~PvL~i~G~~D~~v 659 (729)
.+.+...++.+++..+|...
T Consensus 148 --~~~~~~~~itvy~s~~D~AL 167 (233)
T PF05990_consen 148 --DLGSSARRITVYYSRNDRAL 167 (233)
T ss_pred --HHhhcCCCEEEEEcCCchHH
Confidence 12233467888888888654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.015 Score=62.28 Aligned_cols=196 Identities=9% Similarity=0.038 Sum_probs=112.9
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
+-..||..+ ++++... ..+|+++..++++..|... .+.++...|++||+.||....+ ..|
T Consensus 181 nlldWss~n--~laValg---------~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~--------g~v 241 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVALG---------QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSD--------GTV 241 (484)
T ss_pred hHhhcccCC--eEEEEec---------ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecC--------CeE
Confidence 335699555 3444432 4699999999999988765 6677889999999999976521 223
Q ss_pred EEEEecC------------------------------CCCeeeeE---------EecCCCCCccccccCceeCCCCcEEE
Q 004816 273 WVGYISE------------------------------NGDVYKRV---------CVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 273 ~~~d~~~------------------------------~g~~~~~~---------~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
.++|... ++.+.... .+.++. ..+....|++|++.+.
T Consensus 242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~----qeVCgLkws~d~~~lA 317 (484)
T KOG0305|consen 242 QIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHR----QEVCGLKWSPDGNQLA 317 (484)
T ss_pred EEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhccc----ceeeeeEECCCCCeec
Confidence 3333321 00000000 011122 3455678999987322
Q ss_pred EEecCCCceEEEEEEcCCC-eEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEe
Q 004816 314 VTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL 392 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~ 392 (729)
... ....++++|..+. ....++...+.+-...|.|- ...|+.+........|...|..+|+...
T Consensus 318 SGg---nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~------------q~~lLAsGGGs~D~~i~fwn~~~g~~i~ 382 (484)
T KOG0305|consen 318 SGG---NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW------------QSGLLATGGGSADRCIKFWNTNTGARID 382 (484)
T ss_pred cCC---CccceEeccCCCccccEEEeccceeeeEeeeCCC------------ccCceEEcCCCcccEEEEEEcCCCcEec
Confidence 221 2345666676332 33445556666666778762 2235555544444566666777776443
Q ss_pred eccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEE
Q 004816 393 LDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 393 lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
--.....|..+ +...+.++...+...+.-.||.+.
T Consensus 383 ~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 383 SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 33334456666 455667877777666655677664
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0028 Score=62.42 Aligned_cols=115 Identities=10% Similarity=0.155 Sum_probs=74.9
Q ss_pred ceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEE
Q 004816 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG 275 (729)
Q Consensus 196 ~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~ 275 (729)
.+|||+|++|+-... .+|.+-|..+-+..+|..--+......|+.|.-+|.-....++ .+.+.
T Consensus 14 c~fSp~g~yiAs~~~----------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~-------~vqvw 76 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR----------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDP-------KVQVW 76 (447)
T ss_pred eeECCCCCeeeeeee----------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccc-------eEEEE
Confidence 469999999876644 4577778777666665443445566789999998877764433 37777
Q ss_pred EecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEe
Q 004816 276 YISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI 337 (729)
Q Consensus 276 d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l 337 (729)
++. ..+. ...+.... .++...+|||||+ |+-.+.- ..+|-++.+.+.+...|
T Consensus 77 sl~-Qpew--~ckIdeg~----agls~~~WSPdgrhiL~tseF---~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 77 SLV-QPEW--YCKIDEGQ----AGLSSISWSPDGRHILLTSEF---DLRITVWSLNTQKGYLL 129 (447)
T ss_pred Eee-ccee--EEEeccCC----CcceeeeECCCcceEeeeecc---eeEEEEEEeccceeEEe
Confidence 876 3432 22233332 5677889999998 6665543 35566666666554444
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.17 Score=48.97 Aligned_cols=161 Identities=11% Similarity=-0.019 Sum_probs=95.4
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
+.....+-+.+.++--+.+ +.+-++|.++|+......-........||++|..++++....-+ ....|
T Consensus 55 vW~~Did~~s~~liTGSAD---------~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg---~~~~v 122 (327)
T KOG0643|consen 55 VWCCDIDWDSKHLITGSAD---------QTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMG---YTCFV 122 (327)
T ss_pred EEEEEecCCcceeeecccc---------ceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcC---cceEE
Confidence 3434444455655443332 34667799988876665555556678899999998888744434 34568
Q ss_pred EEEEecCCC-C---eeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCc
Q 004816 273 WVGYISENG-D---VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL 348 (729)
Q Consensus 273 ~~~d~~~~g-~---~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 348 (729)
.++|+..+. . -.+...+...+ ..+....|+|-|+.++..+. .| .|-++|+.+|+...-... ..
T Consensus 123 ~~fdi~~~~~~~~s~ep~~kI~t~~----skit~a~Wg~l~~~ii~Ghe-~G--~is~~da~~g~~~v~s~~--~h---- 189 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEPYLKIPTPD----SKITSALWGPLGETIIAGHE-DG--SISIYDARTGKELVDSDE--EH---- 189 (327)
T ss_pred EEEEccCChhhhcccCceEEecCCc----cceeeeeecccCCEEEEecC-CC--cEEEEEcccCceeeechh--hh----
Confidence 888876211 0 11122333333 45567889999994445544 34 466678888754332211 11
Q ss_pred ccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 349 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 349 w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
...++++.+. .++..++++..+....|+-+
T Consensus 190 -~~~Ind~q~s----~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 190 -SSKINDLQFS----RDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred -cccccccccc----CCcceEEecccCccceeeec
Confidence 1134456665 56677788888888877743
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.012 Score=64.37 Aligned_cols=128 Identities=17% Similarity=0.199 Sum_probs=81.1
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh---hhHHHhhCCcEEEEecCCCCCCCc---hhHH--Hh
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGSTGYG---REFR--ER 542 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---~~~~la~~G~~v~~~d~rGs~g~g---~~~~--~~ 542 (729)
.|...++.|.+ ++ ++ ++.+-||... ....+.. ....-+.+||+++.-|--..+..+ ..|. ..
T Consensus 16 ~i~fev~LP~~--WN----gR---~~~~GgGG~~-G~i~~~~~~~~~~~~~~~G~A~~~TD~Gh~~~~~~~~~~~~~n~~ 85 (474)
T PF07519_consen 16 NIRFEVWLPDN--WN----GR---FLQVGGGGFA-GGINYADGKASMATALARGYATASTDSGHQGSAGSDDASFGNNPE 85 (474)
T ss_pred eEEEEEECChh--hc----cC---eEEECCCeee-CcccccccccccchhhhcCeEEEEecCCCCCCcccccccccCCHH
Confidence 67778888975 42 22 4444333221 1111111 134456889999999953221111 1111 11
Q ss_pred hccCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh
Q 004816 543 LLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 543 ~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~ 608 (729)
...+|+...+.+...+.+.|++. ....+++--..|.|-||-.++.++. +|+.|.++++.+|..++.
T Consensus 86 ~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~ 153 (474)
T PF07519_consen 86 ALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWT 153 (474)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHH
Confidence 23345555577777777888776 3346788999999999999999998 999999999998866543
|
It also includes several bacterial homologues of unknown function. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.12 Score=56.20 Aligned_cols=168 Identities=13% Similarity=0.148 Sum_probs=96.6
Q ss_pred eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 237 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 237 t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
+.+.......+.||||++|++....+ ..||....+ +.+. ++...... .-........++-|+. +++.+
T Consensus 379 ~k~~~nIs~~aiSPdg~~Ia~st~~~-------~~iy~L~~~--~~vk-~~~v~~~~-~~~~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 379 TKEKENISCAAISPDGNLIAISTVSR-------TKIYRLQPD--PNVK-VINVDDVP-LALLDASAISFTIDKNKLFLVS 447 (691)
T ss_pred cCCccceeeeccCCCCCEEEEeeccc-------eEEEEeccC--ccee-EEEeccch-hhhccceeeEEEecCceEEEEe
Confidence 45566667778999999999887322 335555443 3332 22222211 0003445677888988 55555
Q ss_pred ecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec-
Q 004816 316 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD- 394 (729)
Q Consensus 316 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt- 394 (729)
. ....|..+++++...+.+...... .-.+..+.+..++ +|++|...+ ....|+.+++++++.+.|.
T Consensus 448 ~---~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~Ss---dG~yiaa~~---t~g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 448 K---NIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSS---DGNYIAAIS---TRGQIFVYNLETLESHLLKV 514 (691)
T ss_pred c---ccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcC---CCCEEEEEe---ccceEEEEEcccceeecchh
Confidence 2 335566667766655555422211 1123344455554 788777665 4557888899999888776
Q ss_pred cCCcceEEe--e-eeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 395 IPFTDIDNI--T-LGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 395 ~~~~~v~~~--~-~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.....+... . ..-+++++..++ .++|.+|+...+
T Consensus 515 rln~~vTa~~~~~~~~~~lvvats~----nQv~efdi~~~~ 551 (691)
T KOG2048|consen 515 RLNIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIEARN 551 (691)
T ss_pred ccCcceeeeeccccccCcEEEEecC----CeEEEEecchhh
Confidence 334455554 3 334555555543 378999884443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.34 Score=47.74 Aligned_cols=218 Identities=9% Similarity=0.012 Sum_probs=118.5
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
+..+++...+.+|+.||..+| ...++.... ...++...-+.-|-+++.+..++ .++-++|...++..
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG-~~~rk~k~h----~~~vNs~~p~rrg~~lv~SgsdD--------~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETG-KRIRKHKGH----TSFVNSLDPSRRGPQLVCSGSDD--------GTLKLWDIRKKEAI 168 (338)
T ss_pred CCEEEEecCCceEEEEecccc-eeeehhccc----cceeeecCccccCCeEEEecCCC--------ceEEEEeecccchh
Confidence 356777777889999999983 334444433 23334444455677777776655 46788888776655
Q ss_pred EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEE
Q 004816 235 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 313 (729)
Q Consensus 235 ~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~ 313 (729)
++...........|.-++..+.-... +.+|-++|+. .+.. .-.+.+.. ..+..+.-|++|. +.-
T Consensus 169 ~t~~~kyqltAv~f~d~s~qv~sggI--------dn~ikvWd~r-~~d~--~~~lsGh~----DtIt~lsls~~gs~lls 233 (338)
T KOG0265|consen 169 KTFENKYQLTAVGFKDTSDQVISGGI--------DNDIKVWDLR-KNDG--LYTLSGHA----DTITGLSLSRYGSFLLS 233 (338)
T ss_pred hccccceeEEEEEecccccceeeccc--------cCceeeeccc-cCcc--eEEeeccc----CceeeEEeccCCCcccc
Confidence 55545555667889988888754332 2346777775 3332 33555654 4567788899997 543
Q ss_pred EEecCCCceEEEEEEcC-CCeE-EEeecc-Ccc----ccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 314 VTDRKNGFWNLHKWIES-NNEV-LAIYSL-DAE----FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~-~g~~-~~l~~~-~~~----~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
.+.+ ...++|-+.+- .++. ..+... ... .-.-.|++ ++..+-+-+ ....+|+.|..
T Consensus 234 nsMd--~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp------------~~~~i~ags---~dr~vyvwd~~ 296 (338)
T KOG0265|consen 234 NSMD--NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP------------NGTKITAGS---ADRFVYVWDTT 296 (338)
T ss_pred cccc--ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC------------CCCcccccc---ccceEEEeecc
Confidence 3333 22333322221 1211 222211 111 11234555 333332222 22457777766
Q ss_pred CCce-EeeccCCcceEEe-eeeCCEEEEEEeCC
Q 004816 387 GHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASG 417 (729)
Q Consensus 387 ~g~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~ 417 (729)
+... -.|......|..+ ..+..-++...+++
T Consensus 297 ~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 297 SRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred cccEEEEcCCcceeEEEeeecCCCcEEEEeccC
Confidence 5333 3445555666665 45555566655544
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.016 Score=55.14 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=89.9
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
.++-++++..++.+-+||..++ .+.+.|-.. ..+...-+|+||+.|. +... +.|-.+|.++=..
T Consensus 154 eD~~iLSSadd~tVRLWD~rTg-t~v~sL~~~-----s~VtSlEvs~dG~ilT-ia~g---------ssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTG-TEVQSLEFN-----SPVTSLEVSQDGRILT-IAYG---------SSVKFWDAKSFGL 217 (334)
T ss_pred cCceEEeeccCCceEEEEeccC-cEEEEEecC-----CCCcceeeccCCCEEE-EecC---------ceeEEeccccccc
Confidence 4444455566778999999883 333444322 3456778999999643 3321 4566677765322
Q ss_pred EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEe-cCCCCCccccccCceeCCCCcEE
Q 004816 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~-~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
-.-..-+....+...+|+-. ++... . +...+|.+|.. +|+- +... .+.. ..+..++|||||.+|
T Consensus 218 lKs~k~P~nV~SASL~P~k~-~fVaG-g------ed~~~~kfDy~-TgeE--i~~~nkgh~----gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 218 LKSYKMPCNVESASLHPKKE-FFVAG-G------EDFKVYKFDYN-TGEE--IGSYNKGHF----GPVHCVRFSPDGELY 282 (334)
T ss_pred eeeccCccccccccccCCCc-eEEec-C------cceEEEEEecc-CCce--eeecccCCC----CceEEEEECCCCcee
Confidence 11122334456678999863 44333 2 23558999998 6653 3343 4444 566778999999877
Q ss_pred EEEecCCCceEEEEEEcC
Q 004816 313 FVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~ 330 (729)
..... .|.-+||...+.
T Consensus 283 AsGSE-DGTirlWQt~~~ 299 (334)
T KOG0278|consen 283 ASGSE-DGTIRLWQTTPG 299 (334)
T ss_pred eccCC-CceEEEEEecCC
Confidence 66655 788899987653
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.015 Score=64.25 Aligned_cols=146 Identities=10% Similarity=0.096 Sum_probs=85.5
Q ss_pred eEEEECC-EEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 149 ~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
..+.++- +++.+...+|.|-.|+..+ +... .+.-+ .....+..+....-++...+ ...|.++
T Consensus 498 gla~D~~n~~~vsa~~~Gilkfw~f~~--k~l~~~l~l~-----~~~~~iv~hr~s~l~a~~~d---------df~I~vv 561 (910)
T KOG1539|consen 498 GLAVDGTNRLLVSAGADGILKFWDFKK--KVLKKSLRLG-----SSITGIVYHRVSDLLAIALD---------DFSIRVV 561 (910)
T ss_pred EEEecCCCceEEEccCcceEEEEecCC--cceeeeeccC-----CCcceeeeeehhhhhhhhcC---------ceeEEEE
Confidence 3444433 5677777788888898875 3311 11111 00111222222222222222 2568899
Q ss_pred EcCCCceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 227 ALNGQNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 227 dl~~g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
|..+.++.+ +....+..+..+||||||+|+-.+.| ..|.++|+. ++.......+. .....+.+
T Consensus 562 D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD--------~tIr~wDlp-t~~lID~~~vd-------~~~~sls~ 625 (910)
T KOG1539|consen 562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD--------STIRTWDLP-TGTLIDGLLVD-------SPCTSLSF 625 (910)
T ss_pred EchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC--------CcEEEEecc-CcceeeeEecC-------CcceeeEE
Confidence 988766544 33345678889999999999987743 459999998 77763222222 23357899
Q ss_pred CCCCcEEEEEecCCCceEEEEEE
Q 004816 306 SSKGELFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 306 spDG~l~~~~~~~~g~~~l~~~d 328 (729)
||+|.++.+++. +...||.+.
T Consensus 626 SPngD~LAT~Hv--d~~gIylWs 646 (910)
T KOG1539|consen 626 SPNGDFLATVHV--DQNGIYLWS 646 (910)
T ss_pred CCCCCEEEEEEe--cCceEEEEE
Confidence 999995555554 445566654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.025 Score=57.35 Aligned_cols=160 Identities=12% Similarity=0.088 Sum_probs=101.0
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCC---CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.|.+.+|.++.+-..+..+.+|.+..+ +..+.|+..- .+...+++-..|.|--.-+++++..+ ..+.+
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~-~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D--------n~v~i 158 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPEN-GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD--------NTVSI 158 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCc-ccccCcccceEEEeecceeEEEEeecccchhhHhhccCC--------ceEEE
Confidence 466778877777667777878777542 4333333210 01156788888999777676665433 56889
Q ss_pred EEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 226 IALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 226 ~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
+++++|+...-...++...+..|+-||.+|+-+.. ...|.++|.. .|++.. ....+. + ....+..|
T Consensus 159 Wnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttck--------DKkvRv~dpr-~~~~v~--e~~~he-G--~k~~Raif 224 (472)
T KOG0303|consen 159 WNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCK--------DKKVRVIDPR-RGTVVS--EGVAHE-G--AKPARAIF 224 (472)
T ss_pred EeccCCceeeecCCCCeEEEEEeccCCceeeeecc--------cceeEEEcCC-CCcEee--eccccc-C--CCcceeEE
Confidence 99999875433336677788999999999987663 2448888887 676522 222222 1 33457789
Q ss_pred CCCCcEEEEEecCCCceEEEEEEcCC
Q 004816 306 SSKGELFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 306 spDG~l~~~~~~~~g~~~l~~~d~~~ 331 (729)
..+|+++-+.-......++.++|++.
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred eccCceeeeccccccccceeccCccc
Confidence 99997433332223445666777644
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0069 Score=68.87 Aligned_cols=134 Identities=11% Similarity=0.056 Sum_probs=81.4
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC----------Cc---------eEEeeeCCCeeeeeeeCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----------QN---------IQVLVSGSDFYAFPRMDPR 251 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~----------g~---------~~~lt~~~~~~~~~~~SPD 251 (729)
..+.-++|||||++++.-.++. .|.++..+. |. ...|..........+||||
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~---------~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDR---------LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred CceeEEEECCCCCeEeeccCcc---------eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3456678999999988776653 233333331 11 1122223345667899999
Q ss_pred CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcC
Q 004816 252 GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 252 G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~ 330 (729)
+++|+-.+.+ ..|.+++.. +.+. ...+.++. .-+-.+.|.|=|+ ++-++++ ..-.+|+.+ +
T Consensus 141 ~~~lvS~s~D--------nsViiwn~~-tF~~--~~vl~~H~----s~VKGvs~DP~Gky~ASqsdD--rtikvwrt~-d 202 (942)
T KOG0973|consen 141 DSLLVSVSLD--------NSVIIWNAK-TFEL--LKVLRGHQ----SLVKGVSWDPIGKYFASQSDD--RTLKVWRTS-D 202 (942)
T ss_pred ccEEEEeccc--------ceEEEEccc-ccee--eeeeeccc----ccccceEECCccCeeeeecCC--ceEEEEEcc-c
Confidence 9999877743 347888766 4433 56667765 6667899999998 5444443 445566532 2
Q ss_pred CCeEEEeecc------CccccCCcccc
Q 004816 331 NNEVLAIYSL------DAEFSRPLWVF 351 (729)
Q Consensus 331 ~g~~~~l~~~------~~~~~~~~w~~ 351 (729)
-+-.+.++.. ..-+..+.|+|
T Consensus 203 w~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 203 WGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred ceeeEeeccchhhCCCcceeeecccCC
Confidence 3555556521 12344577887
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.02 Score=57.34 Aligned_cols=238 Identities=10% Similarity=-0.012 Sum_probs=136.5
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCee-cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC--c
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ--N 232 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g--~ 232 (729)
.++++..+++.|+++|..+ ++... |-.. ...+.+.+|+.-|+.++-.+.+- .+.++|.++- .
T Consensus 121 ~~v~~as~d~tikv~D~~t--g~~e~~LrGH----t~sv~di~~~a~Gk~l~tcSsDl---------~~~LWd~~~~~~c 185 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTET--GELERSLRGH----TDSVFDISFDASGKYLATCSSDL---------SAKLWDFDTFFRC 185 (406)
T ss_pred eEEEEecCCceEEEEEccc--hhhhhhhhcc----ccceeEEEEecCccEEEecCCcc---------chhheeHHHHHHH
Confidence 5777777888999999988 65432 2222 34478999999999877665443 2555676642 2
Q ss_pred eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEE
Q 004816 233 IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 233 ~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
.+.+.......+.+.+=|-|.+|+-.+.+ ..|..++++ +|-. +..+.+.. ..+.-++.+.||.|+
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD--------~tik~We~~-tg~c--v~t~~~h~----ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRD--------NTIKAWECD-TGYC--VKTFPGHS----EWVRMVRVNQDGTII 250 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeecccc--------cceeEEecc-ccee--EEeccCch----HhEEEEEecCCeeEE
Confidence 23333334456778888999888766533 337778888 6754 55666665 445566778898755
Q ss_pred EEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCc--ceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 313 FVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGIN--SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~--~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
..... ...-++|. .++++.+.+. ..+.-+.--.|.+... +..+.....++..++....+|+...+|-+ .+|.
T Consensus 251 As~s~-dqtl~vW~--~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv--~tg~ 325 (406)
T KOG0295|consen 251 ASCSN-DQTLRVWV--VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV--STGM 325 (406)
T ss_pred EecCC-CceEEEEE--eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec--cCCe
Confidence 44433 33445554 4455333222 1111111123332211 00000000144568888888888888855 4554
Q ss_pred -eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 390 -LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 390 -~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
+-.|-.....|.++ ..+++++++..+.+. .|-.+|++.+
T Consensus 326 cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk---tlrvwdl~~~ 366 (406)
T KOG0295|consen 326 CLFTLVGHDNWVRGVAFSPGGKYILSCADDK---TLRVWDLKNL 366 (406)
T ss_pred EEEEEecccceeeeeEEcCCCeEEEEEecCC---cEEEEEeccc
Confidence 22333445567776 677788887777543 3445555554
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0052 Score=63.64 Aligned_cols=175 Identities=13% Similarity=0.178 Sum_probs=100.6
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
|.+++..++++...++.|..||+.+ ++. ....+..-..+.+..|-|+|++.+-++++. .+.+++..
T Consensus 307 f~pd~~n~fl~G~sd~ki~~wDiRs--~kv---vqeYd~hLg~i~~i~F~~~g~rFissSDdk---------s~riWe~~ 372 (503)
T KOG0282|consen 307 FHPDNQNIFLVGGSDKKIRQWDIRS--GKV---VQEYDRHLGAILDITFVDEGRRFISSSDDK---------SVRIWENR 372 (503)
T ss_pred cCCCCCcEEEEecCCCcEEEEeccc--hHH---HHHHHhhhhheeeeEEccCCceEeeeccCc---------cEEEEEcC
Confidence 4455557777777788999999987 542 222111124457888999999877666543 35555655
Q ss_pred CCceEEeeeCCCeeeee--eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 230 GQNIQVLVSGSDFYAFP--RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 230 ~g~~~~lt~~~~~~~~~--~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
.+-...+.......+-| ..+|.|++++-.+. ...|+++.+..--.......+++.... ++...+.+||
T Consensus 373 ~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~--------dN~i~ifs~~~~~r~nkkK~feGh~va--Gys~~v~fSp 442 (503)
T KOG0282|consen 373 IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM--------DNYIAIFSTVPPFRLNKKKRFEGHSVA--GYSCQVDFSP 442 (503)
T ss_pred CCccchhhcchhhccCcceecCCCCCeehhhcc--------CceEEEEecccccccCHhhhhcceecc--CceeeEEEcC
Confidence 44443333333333334 56899998876553 345777765411112223334443211 5567789999
Q ss_pred CCcEEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccc
Q 004816 308 KGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVF 351 (729)
Q Consensus 308 DG~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~ 351 (729)
||+.++..+. .| .++.+|-.+-+.. .+-..+.-.....|.|
T Consensus 443 DG~~l~SGds-dG--~v~~wdwkt~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 443 DGRTLCSGDS-DG--KVNFWDWKTTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred CCCeEEeecC-Cc--cEEEeechhhhhhhccccCCcceEEEEecC
Confidence 9996666655 45 4555665554322 2222333444566776
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0094 Score=60.50 Aligned_cols=188 Identities=11% Similarity=0.003 Sum_probs=114.5
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcE
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l 167 (729)
+.++++++||.+..|...+ ++|+..||-..-. -+++.|.. +++...+..|.+. .++++...++-+
T Consensus 181 eaIRdlafSpnDskF~t~S---dDg~ikiWdf~~~--kee~vL~G---------HgwdVksvdWHP~kgLiasgskDnlV 246 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCS---DDGTIKIWDFRMP--KEERVLRG---------HGWDVKSVDWHPTKGLIASGSKDNLV 246 (464)
T ss_pred hhhheeccCCCCceeEEec---CCCeEEEEeccCC--chhheecc---------CCCCcceeccCCccceeEEccCCcee
Confidence 5788999999555555544 6788889876544 14455532 3455566666655 466776667778
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-eEEeeeCCCeeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQVLVSGSDFYAFP 246 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-~~~lt~~~~~~~~~ 246 (729)
-+||..++ ...-.|... ...+...+|+|+|.+|+..+.+. .+-++|+.+-+ ....-.....+...
T Consensus 247 KlWDprSg-~cl~tlh~H----KntVl~~~f~~n~N~Llt~skD~---------~~kv~DiR~mkEl~~~r~Hkkdv~~~ 312 (464)
T KOG0284|consen 247 KLWDPRSG-SCLATLHGH----KNTVLAVKFNPNGNWLLTGSKDQ---------SCKVFDIRTMKELFTYRGHKKDVTSL 312 (464)
T ss_pred EeecCCCc-chhhhhhhc----cceEEEEEEcCCCCeeEEccCCc---------eEEEEehhHhHHHHHhhcchhhheee
Confidence 89999872 233333333 46788899999999988877653 56677876432 22222344567778
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 317 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~ 317 (729)
.|+|=-.-|..+... + ..|+.+.+.....+ ..+-...+ ..+...+|.|=|.|+.....
T Consensus 313 ~WhP~~~~lftsgg~------D-gsvvh~~v~~~~p~--~~i~~AHd----~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGS------D-GSVVHWVVGLEEPL--GEIPPAHD----GEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred ccccccccceeeccC------C-CceEEEeccccccc--cCCCcccc----cceeeeeccccceeEeecCC
Confidence 999977777544421 1 12433333300111 11223334 56678889999986666443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.054 Score=53.37 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=71.2
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
....||+-|..|+.-+.+ +.|.++|..+-.+- .|+..-......+||+||++|.-.+.+ ..+
T Consensus 27 ~~~~Fs~~G~~lAvGc~n---------G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D--------~si 89 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCAN---------GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRD--------WSI 89 (405)
T ss_pred ceEEeccCcceeeeeccC---------CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCC--------cee
Confidence 456799999988776654 46888899885543 344444456788999999999766522 337
Q ss_pred EEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 273 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 273 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
-++|+- .|..-....+. ..+....|.|-.+ .+....- +.. -++++...++.+.|.
T Consensus 90 ~lwDl~-~gs~l~rirf~-------spv~~~q~hp~k~n~~va~~~-~~s--p~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 90 KLWDLL-KGSPLKRIRFD-------SPVWGAQWHPRKRNKCVATIM-EES--PVVIDFSDPKHSVLP 145 (405)
T ss_pred EEEecc-CCCceeEEEcc-------CccceeeeccccCCeEEEEEe-cCC--cEEEEecCCceeecc
Confidence 788888 56642222222 2234567877655 4444433 222 333444445555554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.039 Score=58.53 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=74.0
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
+.||+++.++. ....+|... ..+.+++|+|+|+..+.+..--+ ..+-++|+.+.-+-.+.++ ..+
T Consensus 251 q~Lyll~t~g~-s~~V~L~k~-----GPVhdv~W~~s~~EF~VvyGfMP-------Akvtifnlr~~~v~df~eg--pRN 315 (566)
T KOG2315|consen 251 QTLYLLATQGE-SVSVPLLKE-----GPVHDVTWSPSGREFAVVYGFMP-------AKVTIFNLRGKPVFDFPEG--PRN 315 (566)
T ss_pred ceEEEEEecCc-eEEEecCCC-----CCceEEEECCCCCEEEEEEeccc-------ceEEEEcCCCCEeEeCCCC--Ccc
Confidence 47999999841 223344432 34688999999998766644322 4466668875433333333 345
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 314 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~ 314 (729)
..-|||-|+.|++...+. -..++-++|+. +-+. +..+.. ....-..|+|||+.+++
T Consensus 316 ~~~fnp~g~ii~lAGFGN-----L~G~mEvwDv~-n~K~--i~~~~a------~~tt~~eW~PdGe~flT 371 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGN-----LPGDMEVWDVP-NRKL--IAKFKA------ANTTVFEWSPDGEYFLT 371 (566)
T ss_pred ceEECCCCCEEEEeecCC-----CCCceEEEecc-chhh--cccccc------CCceEEEEcCCCcEEEE
Confidence 678999999999888654 23457777877 4221 211111 22245689999994433
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0076 Score=65.72 Aligned_cols=139 Identities=19% Similarity=0.191 Sum_probs=80.1
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc---------h--------hhhHHHhhCCcE
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---------N--------LSIQYWTSRGWA 523 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~---------~--------~~~~~la~~G~~ 523 (729)
+.+... .+..+..|++...+ ..+..|+||++.|||++...... . ..-..|.+ -..
T Consensus 16 l~~~~~-~~~~lfyw~~~s~~------~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~-~an 87 (415)
T PF00450_consen 16 LPVNDN-ENAHLFYWFFESRN------DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK-FAN 87 (415)
T ss_dssp EEECTT-TTEEEEEEEEE-SS------GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG-TSE
T ss_pred EecCCC-CCcEEEEEEEEeCC------CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc-ccc
Confidence 344433 67889988887655 24667999999999986543210 0 01112223 278
Q ss_pred EEEecCCCCCCCchhHHHhhccCCC-cccHHHHHHHHH-HHHhCCCCCCCcEEEEEcChHHHHHHHHHh-----C-----
Q 004816 524 FVDVNYGGSTGYGREFRERLLGRWG-IVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-----F----- 591 (729)
Q Consensus 524 v~~~d~rGs~g~g~~~~~~~~~~~~-~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-----~----- 591 (729)
++.+|.+-+.|+...-.... ..+. ....+|+..++. |+...+.....++.|.|.||||..+-.++. .
T Consensus 88 ~l~iD~PvGtGfS~~~~~~~-~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~ 166 (415)
T PF00450_consen 88 LLFIDQPVGTGFSYGNDPSD-YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQ 166 (415)
T ss_dssp EEEE--STTSTT-EESSGGG-GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--S
T ss_pred eEEEeecCceEEeecccccc-ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccc
Confidence 99999776677654422221 1111 123566666665 444445556669999999999987755542 2
Q ss_pred -CCcceEEEEeccccChh
Q 004816 592 -RDTFKAGASLYGVADLS 608 (729)
Q Consensus 592 -~~~~~a~v~~~~~~d~~ 608 (729)
.-.++++++.+|+++..
T Consensus 167 ~~inLkGi~IGng~~dp~ 184 (415)
T PF00450_consen 167 PKINLKGIAIGNGWIDPR 184 (415)
T ss_dssp TTSEEEEEEEESE-SBHH
T ss_pred cccccccceecCcccccc
Confidence 34589999999988764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.088 Score=53.72 Aligned_cols=194 Identities=10% Similarity=0.042 Sum_probs=104.0
Q ss_pred eEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCC-CCcE-EEEEEecCCCCeeeeEEecCCCC-Ccc
Q 004816 221 TEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW-DKAE-LWVGYISENGDVYKRVCVAGFDP-TIV 297 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~-~~~~-l~~~d~~~~g~~~~~~~~~~~~~-~~~ 297 (729)
.++|++|.++++..=..+ .++..++..||||+.+|..+.--+.... ..++ |-++|.. +=.......++.... ...
T Consensus 17 ~rv~viD~d~~k~lGmi~-~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID-TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEE-EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEee-cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchheec
Confidence 689999999887543222 1244567889999999865521111000 1222 5566766 433333334443310 101
Q ss_pred ccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 298 ~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
.+......|.||+.+++.+- .-...+-++|++.++...-.+-++.... ... .++. +.+-..+|.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~~kvv~ei~~PGC~~i----------yP~----~~~~-F~~lC~DGs 158 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNF-TPATSVTVVDLAAKKVVGEIDTPGCWLI----------YPS----GNRG-FSMLCGDGS 158 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEEGTSEEEE----------EEE----ETTE-EEEEETTSC
T ss_pred ccccceEEccCCcEEEEEcc-CCCCeEEEEECCCCceeeeecCCCEEEE----------Eec----CCCc-eEEEecCCc
Confidence 23345678999995555554 4567899999999887654433322211 111 2334 346667888
Q ss_pred EEEEEEECCCCceEeeccCCcc-eEEe------eeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 378 SYLGILDDFGHSLSLLDIPFTD-IDNI------TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 378 ~~ly~~d~~~g~~~~lt~~~~~-v~~~------~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
..-+.+|.+|+..+..+.-+.. -+.+ ...+++++|.+- .+.+|.+++.+.+.+..
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~ 220 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFG 220 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEE
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEeccCCccccc
Confidence 7778887766665433322211 1112 233455655443 25799999888775443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.13 Score=55.22 Aligned_cols=205 Identities=12% Similarity=0.111 Sum_probs=116.7
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
....+.+++........+.++|..+ ... ..+..+ .......++|+|+.++....... ...+.++|.
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~--~~~~~~~~vG-----~~P~~~~~~~~~~~vYV~n~~~~------~~~vsvid~ 147 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTAT--NTVLGSIPVG-----LGPVGLAVDPDGKYVYVANAGNG------NNTVSVIDA 147 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcc--cceeeEeeec-----cCCceEEECCCCCEEEEEecccC------CceEEEEeC
Confidence 3334555655555566888888665 221 111111 12367789999999655543211 367999999
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE--ecCCCCCccccccCceeC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC--VAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~--~~~~~~~~~~~~~~~~ws 306 (729)
++++............+.+++|||++++.... ....|.++|.+ +.....-.. ..... .......++
T Consensus 148 ~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~-------~~~~v~vi~~~-~~~v~~~~~~~~~~~~----~~P~~i~v~ 215 (381)
T COG3391 148 ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNS-------DDNTVSVIDTS-GNSVVRGSVGSLVGVG----TGPAGIAVD 215 (381)
T ss_pred CCCeEEEEEecCCCcceEEECCCCCeEEEEec-------CCCeEEEEeCC-CcceeccccccccccC----CCCceEEEC
Confidence 88776544332222267799999999876662 23558899866 333211000 01111 344678899
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
+||..+|+.+.......+.++|..++...... ..... .+ ....+.| +++.+|..... ...++.+|.
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~------~~v~~~p---~g~~~yv~~~~--~~~V~vid~ 282 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--AP------RGVAVDP---AGKAAYVANSQ--GGTVSVIDG 282 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CC------CceeECC---CCCEEEEEecC--CCeEEEEeC
Confidence 99995555554244468999999888766542 11100 01 1112222 66666665443 446777777
Q ss_pred CCCceEe
Q 004816 386 FGHSLSL 392 (729)
Q Consensus 386 ~~g~~~~ 392 (729)
.+..+..
T Consensus 283 ~~~~v~~ 289 (381)
T COG3391 283 ATDRVVK 289 (381)
T ss_pred CCCceee
Confidence 6655443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.2 Score=59.74 Aligned_cols=210 Identities=9% Similarity=0.035 Sum_probs=107.8
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCc----eEEEECCEEEEEECCCC
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG----AFRIFGDTVIFSNYKDQ 165 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~ 165 (729)
+....|++ .+.+|++...........+-+...+ ++...++.-+... . ...+.. .|..+.+.+++. ..+|
T Consensus 24 ~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~--~~~~~l~s~~~~~--~-~~~~~~ivs~~yl~d~~~l~~~-~~~G 97 (928)
T PF04762_consen 24 ITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQD--GSVEVLASWDAPL--P-DDPNDKIVSFQYLADSESLCIA-LASG 97 (928)
T ss_pred cceEEEecCCCeEEEEECCCCcceEEEEEeeccC--CceeEEEeccccC--C-cCCCCcEEEEEeccCCCcEEEE-ECCc
Confidence 34567787 7888888763322244445444433 1222333211000 0 001111 122233344333 3577
Q ss_pred cEEEE----eCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE----------cCC-
Q 004816 166 RLYKH----SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA----------LNG- 230 (729)
Q Consensus 166 ~l~~~----d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d----------l~~- 230 (729)
+|.++ +.++ ...+.+... ...+...+||||++.|+.+.... +|.+++ +..
T Consensus 98 di~~~~~~~~~~~--~~~E~VG~v----d~GI~a~~WSPD~Ella~vT~~~---------~l~~mt~~fd~i~E~~l~~~ 162 (928)
T PF04762_consen 98 DIILVREDPDPDE--DEIEIVGSV----DSGILAASWSPDEELLALVTGEG---------NLLLMTRDFDPISEVPLDSD 162 (928)
T ss_pred eEEEEEccCCCCC--ceeEEEEEE----cCcEEEEEECCCcCEEEEEeCCC---------EEEEEeccceEEEEeecCcc
Confidence 88888 5555 556666554 24467789999999988886532 122211 110
Q ss_pred --C-----------ceEEe------------ee------------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEE
Q 004816 231 --Q-----------NIQVL------------VS------------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 273 (729)
Q Consensus 231 --g-----------~~~~l------------t~------------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~ 273 (729)
| +.+|. .. ..+.....+|-.||+++|....+.... ....|.
T Consensus 163 ~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~--~~R~iR 240 (928)
T PF04762_consen 163 DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG--SRRVIR 240 (928)
T ss_pred ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC--ceeEEE
Confidence 1 11111 00 011223457999999998777533220 135577
Q ss_pred EEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCC
Q 004816 274 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 274 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~ 331 (729)
+++-+ |.+.. ..+..+ +-...++|-|.|.++...++..+...|..+..+|
T Consensus 241 Vy~Re--G~L~s--tSE~v~----gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG 290 (928)
T PF04762_consen 241 VYSRE--GELQS--TSEPVD----GLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG 290 (928)
T ss_pred EECCC--ceEEe--ccccCC----CccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence 77644 55421 122222 3335789999999666665545566676666554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.007 Score=63.56 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=46.1
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecC
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 318 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~ 318 (729)
+.+.....+|||||++||.++. ..-|.++|.+ +.++ +-+....- ..+.-++|||||+++.+...
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSq--------DGfLRvF~fd-t~eL--lg~mkSYF----GGLLCvcWSPDGKyIvtGGE- 352 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQ--------DGFLRIFDFD-TQEL--LGVMKSYF----GGLLCVCWSPDGKYIVTGGE- 352 (636)
T ss_pred ccccccceeEcCCCceEEEEec--------CceEEEeecc-HHHH--HHHHHhhc----cceEEEEEcCCccEEEecCC-
Confidence 4446678899999999999983 3448888887 3332 11222111 34456799999996655544
Q ss_pred CCceEEEEE
Q 004816 319 NGFWNLHKW 327 (729)
Q Consensus 319 ~g~~~l~~~ 327 (729)
++--.+|-+
T Consensus 353 DDLVtVwSf 361 (636)
T KOG2394|consen 353 DDLVTVWSF 361 (636)
T ss_pred cceEEEEEe
Confidence 344455544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.049 Score=52.13 Aligned_cols=203 Identities=11% Similarity=0.039 Sum_probs=115.6
Q ss_pred ecceecC--CCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceEEee--eCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 194 ADGIFDP--RFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 194 ~~~~~SP--dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~~lt--~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
....||| +++..+.+...-+-. ....||+++++. +.++.+- .-.+.....+||+.-..++++...+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~---G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD------ 82 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLA---GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD------ 82 (311)
T ss_pred ceeEecccccchhheeehhhcccc---cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecC------
Confidence 4567888 555433333332211 147899999963 3333332 2345567889999888887777432
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 347 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~ 347 (729)
..|.++|+. ....++..+.+.. .-+..+.|++--+ .+.++.. .+.-.||.-+.. ..++........+...
T Consensus 83 -GSLrl~d~~--~~s~Pi~~~kEH~----~EV~Svdwn~~~r~~~ltsSW-D~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a 153 (311)
T KOG0277|consen 83 -GSLRLFDLT--MPSKPIHKFKEHK----REVYSVDWNTVRRRIFLTSSW-DGTIKLWDPNRP-NSVQTFNGHNSCIYQA 153 (311)
T ss_pred -ceEEEeccC--CCCcchhHHHhhh----hheEEeccccccceeEEeecc-CCceEeecCCCC-cceEeecCCccEEEEE
Confidence 347777754 2223566666665 5556778887655 6666665 666667644321 1222222333344455
Q ss_pred cccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEE
Q 004816 348 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 348 ~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
.|+| ....++.+...++.-+||-++..++... +..+..++... ..-+..+++.++... .++.
T Consensus 154 ~~sp------------~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~---~vr~ 217 (311)
T KOG0277|consen 154 AFSP------------HIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDN---LVRG 217 (311)
T ss_pred ecCC------------CCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCc---eEEE
Confidence 6665 3334666666788889998877654443 55555444443 233445555554432 4555
Q ss_pred EEcCC
Q 004816 426 VTLDD 430 (729)
Q Consensus 426 ~d~~~ 430 (729)
+|+..
T Consensus 218 wDir~ 222 (311)
T KOG0277|consen 218 WDIRN 222 (311)
T ss_pred Eehhh
Confidence 55543
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0016 Score=69.99 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=63.5
Q ss_pred cccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHH
Q 004816 507 RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 586 (729)
Q Consensus 507 ~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~ 586 (729)
...|..+++.|.+.||.+ ..|++| +|.+|+.... ....++++...++.+.+.. ..+++.|+||||||.++.
T Consensus 107 ~~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~~~---~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~ 177 (440)
T PLN02733 107 VYYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQSNR---LPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVK 177 (440)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCccc---CCCCcccccc---HHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHH
Confidence 356777899999999866 778874 4455554211 1122577777777776653 246899999999999999
Q ss_pred HHHh-CCCc----ceEEEEecccc
Q 004816 587 AALA-FRDT----FKAGASLYGVA 605 (729)
Q Consensus 587 ~~~~-~~~~----~~a~v~~~~~~ 605 (729)
.++. +|+. ++..|++++..
T Consensus 178 ~fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 178 CFMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HHHHHCCHhHHhHhccEEEECCCC
Confidence 8887 6653 67777776643
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0079 Score=68.82 Aligned_cols=255 Identities=12% Similarity=0.111 Sum_probs=137.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccccccc--CCceEEEECCEEEEEECCCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEY--GGGAFRIFGDTVIFSNYKDQ 165 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~ 165 (729)
.+...+.|.+ |..--=+=....++|...||..+.-..+....++.. ...|.- -+..|....+.++-+...+|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-----~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT-----KSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh-----hcccCCceeeeeccccCCceeeccCCCC
Confidence 4556778887 654211111233678877775543100122222211 011110 12334444555666666778
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeC--CCe
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSG--SDF 242 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~--~~~ 242 (729)
+|++||+.. -..+.+.+.......+...+|...-++|+...... ....++|+...++ ..+... ...
T Consensus 140 eI~iWDlnn---~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s--------g~~~iWDlr~~~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 140 EILIWDLNK---PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS--------GRAVIWDLRKKKPIIKLSDTPGRMH 208 (1049)
T ss_pred cEEEeccCC---cCCCCCCCCCCCcccceEeccchhhhHHhhccCCC--------CCceeccccCCCcccccccCCCccc
Confidence 999999974 33344433211123445566766666665554332 3456678875432 233322 234
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCc
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF 321 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~ 321 (729)
.+...|.||+..-+.+..++.+ ..-|-++|+. .-. .....+.++. .++-.+.|.+.+. ++..+.. .
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~----~PviqlWDlR-~as-sP~k~~~~H~----~GilslsWc~~D~~lllSsgk---D 275 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDS----APVIQLWDLR-FAS-SPLKILEGHQ----RGILSLSWCPQDPRLLLSSGK---D 275 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCC----CceeEeeccc-ccC-Cchhhhcccc----cceeeeccCCCCchhhhcccC---C
Confidence 5688999998776666655543 2345666654 221 3355566666 6778899999875 6666544 3
Q ss_pred eEEEEEEcCCCeEEE-eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 322 WNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
.++..+++++|+..- +-....++.+-.|.+ .+-.++..+.-+|...||.+-
T Consensus 276 ~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p------------r~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELPAQGNWCFDVQWCP------------RNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred CCeeEecCCCceEeeecCCCCcceeeeeecC------------CCcchhhhheeccceeeeeee
Confidence 568888999887543 222222333445544 222344445557877887663
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.23 Score=53.00 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=92.3
Q ss_pred ecceecCCCCEEEEEEeccCC---CCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 194 ADGIFDPRFNRYVTVREDRRQ---DALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~---~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
-...|.+-|.-|+.+...+-+ ......+.||.++.++.....=....+..-...|||+|+..+.+-.- || .
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf---MP---A 294 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF---MP---A 294 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEec---cc---c
Confidence 456799999988877643322 22234578999999844333222334556678999999998877622 22 3
Q ss_pred EEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccC-ccccCCcc
Q 004816 271 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AEFSRPLW 349 (729)
Q Consensus 271 ~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~-~~~~~~~w 349 (729)
.+-++|+. +.. +-.+... .-..+.|+|-|+++.++.-.+-...+-++|..+ .+.|.... .+.+-..|
T Consensus 295 kvtifnlr--~~~--v~df~eg------pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~eW 362 (566)
T KOG2315|consen 295 KVTIFNLR--GKP--VFDFPEG------PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVFEW 362 (566)
T ss_pred eEEEEcCC--CCE--eEeCCCC------CccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccccCCceEEEE
Confidence 37777776 433 2222222 224678999999555443312233455567655 23333222 12223456
Q ss_pred cccCcceeeeeecCCCCEEEEEEEE-----CCeEEEEEEE
Q 004816 350 VFGINSYEIIQSHGEKNLIACSYRQ-----NGRSYLGILD 384 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s~~-----~g~~~ly~~d 384 (729)
+| ||.+|+..... |+...||.++
T Consensus 363 ~P------------dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 363 SP------------DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cC------------CCcEEEEEeccccEEecCCeEEEEec
Confidence 65 77776655432 4555677663
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.22 Score=52.38 Aligned_cols=92 Identities=17% Similarity=0.322 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe-eeeEEecCCCCCcccc
Q 004816 221 TEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVES 299 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~-~~~~~~~~~~~~~~~~ 299 (729)
...+++|.++....++-......+-.++||||..||..+. +..||++.++.+|.. .......+ ..
T Consensus 428 G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~--------d~~iyiy~Vs~~g~~y~r~~k~~g------s~ 493 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH--------DNHIYIYRVSANGRKYSRVGKCSG------SP 493 (626)
T ss_pred ceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC--------CCeEEEEEECCCCcEEEEeeeecC------ce
Confidence 5688899887655555444556677899999999998773 234777777755542 11212222 35
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEc
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~ 329 (729)
+....||+|++.+ .++. +...|..+.+
T Consensus 494 ithLDwS~Ds~~~-~~~S--~d~eiLyW~~ 520 (626)
T KOG2106|consen 494 ITHLDWSSDSQFL-VSNS--GDYEILYWKP 520 (626)
T ss_pred eEEeeecCCCceE-Eecc--CceEEEEEcc
Confidence 5788999999733 4443 4455555544
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.038 Score=53.63 Aligned_cols=175 Identities=14% Similarity=0.127 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCCccc--cchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 494 LLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~--~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.||.+-||..-...+ .|+.+.+.|+++||.|++.-|.- ++-.. .... .....+..+++.|.+....+..
T Consensus 18 gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~--tfDH~--~~A~-----~~~~~f~~~~~~L~~~~~~~~~ 88 (250)
T PF07082_consen 18 GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVV--TFDHQ--AIAR-----EVWERFERCLRALQKRGGLDPA 88 (250)
T ss_pred EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCC--CCcHH--HHHH-----HHHHHHHHHHHHHHHhcCCCcc
Confidence 577777765433333 47778899999999999999963 22211 1111 1134456677777766544433
Q ss_pred --cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-----HHhhhc-chhhhhhhhhhcCChhhhhhcCcccccC
Q 004816 572 --RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-----MLRAET-HKFESRYIDNLVGSEKDYYEKSPINFVD 642 (729)
Q Consensus 572 --ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 642 (729)
.+.=+|||+|+.+-+.+.. ++..-++-++++ +-|.. .+.... .....++...+.+. ....+. .
T Consensus 89 ~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~a~~aIP~~~~l~~~l~~EF~PsP~ET-~~li~~---~--- 160 (250)
T PF07082_consen 89 YLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFPADEAIPLLEQLAPALRLEFTPSPEET-RRLIRE---S--- 160 (250)
T ss_pred cCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChHHHhhCchHhhhccccccCccCCHHHH-HHHHHH---h---
Confidence 5777999999999888776 432223323221 11111 000000 00000111100000 011111 0
Q ss_pred CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCC-CEEEEEECCCCcc
Q 004816 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGL-PVALVEYEGEQHG 689 (729)
Q Consensus 643 ~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~gH~ 689 (729)
..-...|+|.-.+|.. .++..+.+.|+.... -++....+| .|-
T Consensus 161 Y~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 161 YQVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred cCCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 0123468888888876 688899999987633 356677775 685
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.26 Score=50.86 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=106.5
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
.+++...+..|++|..... ..+..+-.. ...+......|.|++++..+++. ....-|..+|..-..
T Consensus 275 ~v~~aSad~~i~vws~~~~-s~~~~~~~h----~~~V~~ls~h~tgeYllsAs~d~---------~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 275 TVITASADEIIRVWSVPLS-SEPTSSRPH----EEPVTGLSLHPTGEYLLSASNDG---------TWAFSDISSGSQLTV 340 (506)
T ss_pred heeecCCcceEEeeccccc-cCccccccc----cccceeeeeccCCcEEEEecCCc---------eEEEEEccCCcEEEE
Confidence 3444444556777776541 222222222 23467778999999887776543 233446655543222
Q ss_pred eeCC---CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EE
Q 004816 237 VSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF 312 (729)
Q Consensus 237 t~~~---~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~ 312 (729)
.... -.++...|.|||- .|.... .+..|-++|+. ++. +...++++. ..+..+.|+.+|- ++
T Consensus 341 vs~~~s~v~~ts~~fHpDgL--ifgtgt------~d~~vkiwdlk-s~~--~~a~Fpght----~~vk~i~FsENGY~La 405 (506)
T KOG0289|consen 341 VSDETSDVEYTSAAFHPDGL--IFGTGT------PDGVVKIWDLK-SQT--NVAKFPGHT----GPVKAISFSENGYWLA 405 (506)
T ss_pred EeeccccceeEEeeEcCCce--EEeccC------CCceEEEEEcC-Ccc--ccccCCCCC----CceeEEEeccCceEEE
Confidence 2221 2367789999995 343312 24568899998 554 356667765 6678889999996 33
Q ss_pred EEEecCCCceEEEEEEcCCCe-EEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 313 FVTDRKNGFWNLHKWIESNNE-VLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~-~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
..+++ + .+..+|+..-+ .+.+. ++.. +..++.|. ..+.++..+ ...-.||.++-.++++
T Consensus 406 t~add--~--~V~lwDLRKl~n~kt~~l~~~~---------~v~s~~fD----~SGt~L~~~--g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 406 TAADD--G--SVKLWDLRKLKNFKTIQLDEKK---------EVNSLSFD----QSGTYLGIA--GSDLQVYICKKKTKSW 466 (506)
T ss_pred EEecC--C--eEEEEEehhhcccceeeccccc---------cceeEEEc----CCCCeEEee--cceeEEEEEecccccc
Confidence 33333 3 36677775422 22232 1111 23345553 333333333 3456788888778887
Q ss_pred Eeec
Q 004816 391 SLLD 394 (729)
Q Consensus 391 ~~lt 394 (729)
+.+.
T Consensus 467 ~~~~ 470 (506)
T KOG0289|consen 467 TEIK 470 (506)
T ss_pred eeee
Confidence 7664
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0028 Score=69.43 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCCCCcc-ccchhhhHHHhh-CCcEEEEecCCCCCCCchhH--HHhhccCCC----cccHHHHHHHHHHHH
Q 004816 492 PPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGYGREF--RERLLGRWG----IVDVNDCCSCATFLV 563 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~-~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~~~--~~~~~~~~~----~~~~~D~~~~~~~l~ 563 (729)
.|++|++-|. +.... .........+|+ .|-.++++.+|- ||.+. ......+.. .+.++|+...++++.
T Consensus 29 gpifl~~ggE-~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYIGGE-GPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE--S-S-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-CccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 6888888554 22111 111113334444 599999999994 44432 121121211 234899999999998
Q ss_pred hCC-CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC
Q 004816 564 GSG-KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD 606 (729)
Q Consensus 564 ~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d 606 (729)
.+. ..+..+++++|.||||.+|.++-. +|+.|.++++-+++..
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 653 345569999999999999999987 9999999999887653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.15 Score=51.99 Aligned_cols=204 Identities=9% Similarity=0.002 Sum_probs=115.1
Q ss_pred ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-------eEEeeeCCCeeeeeeeCCCCCeEEEEEecC
Q 004816 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-------IQVLVSGSDFYAFPRMDPRGERMAWIEWHH 262 (729)
Q Consensus 190 ~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-------~~~lt~~~~~~~~~~~SPDG~~la~~~~~~ 262 (729)
...+-+..|+|-...++.+..++. .-.||.++-. +. +..|+..........|.|--.-+.+.+..
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~------~v~vW~IPe~-~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~- 152 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDT------KVMVWQIPEN-GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS- 152 (472)
T ss_pred cccccccccCccCCceeecCCCCc------eEEEEECCCc-ccccCcccceEEEeecceeEEEEeecccchhhHhhccC-
Confidence 345678899998888877755431 2335554432 22 23344444566677999977777665522
Q ss_pred CCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCc
Q 004816 263 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA 342 (729)
Q Consensus 263 ~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~ 342 (729)
...+.++++. +|+. ...+. ++ .-+.++.|+-||.+++++.+ ...|-++|+.++++..-- ..
T Consensus 153 ------Dn~v~iWnv~-tgea--li~l~-hp----d~i~S~sfn~dGs~l~Ttck---DKkvRv~dpr~~~~v~e~--~~ 213 (472)
T KOG0303|consen 153 ------DNTVSIWNVG-TGEA--LITLD-HP----DMVYSMSFNRDGSLLCTTCK---DKKVRVIDPRRGTVVSEG--VA 213 (472)
T ss_pred ------CceEEEEecc-CCce--eeecC-CC----CeEEEEEeccCCceeeeecc---cceeEEEcCCCCcEeeec--cc
Confidence 3458888988 6763 22222 43 45567899999996666655 245777899888654332 11
Q ss_pred cccCCcccccCcceeeeeecCCCCEEEEEEE-ECCeEEEEEEECCC----CceEeeccCCcceEEeeeeCCEEEEEEeCC
Q 004816 343 EFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFG----HSLSLLDIPFTDIDNITLGNDCLFVEGASG 417 (729)
Q Consensus 343 ~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~-~~g~~~ly~~d~~~----g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~ 417 (729)
..+. ......|+. +++ ++-+.. +-...++.+.|.+. ...+.|.+..+.+-++.+++..++|..+..
T Consensus 214 heG~-----k~~Raifl~---~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 214 HEGA-----KPARAIFLA---SGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred ccCC-----CcceeEEec---cCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecC
Confidence 1111 011234552 333 333222 23344555555433 123344444444555566777888888877
Q ss_pred CCCceEEEEEcC
Q 004816 418 VEPSSVAKVTLD 429 (729)
Q Consensus 418 ~~~~~ly~~d~~ 429 (729)
+..-.+|.+..+
T Consensus 285 D~~IRYyEit~d 296 (472)
T KOG0303|consen 285 DSSIRYFEITNE 296 (472)
T ss_pred CcceEEEEecCC
Confidence 766667766543
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.13 Score=57.27 Aligned_cols=177 Identities=15% Similarity=0.176 Sum_probs=98.3
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 271 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 271 (729)
....++.|+||+.++++..+. ..|++... ++..+.+..+. ....|.|+++| +| |+..+. ....
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~--------~~l~~~~~-g~~~~~~~~g~-~Lt~PS~d~~g-~v-Wtv~~g-----~~~~ 406 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSR--------TTLYTVSP-GQPARALTSGS-TLTRPSFSPQD-WV-WTAGPG-----GNGR 406 (573)
T ss_pred cccceeecCCCceEEEecCCC--------cEEEEecC-CCcceeeecCC-CccCCcccCCC-CE-EEeeCC-----CCce
Confidence 445678999999988884321 46887776 34666666654 46789999999 55 444222 1224
Q ss_pred EEEEEecCCCCeee--e-EEec-CCCCCccccccCceeCCCCc-EEEEEecCCCceEEEE--E-EcCCCeEEEeeccC--
Q 004816 272 LWVGYISENGDVYK--R-VCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK--W-IESNNEVLAIYSLD-- 341 (729)
Q Consensus 272 l~~~d~~~~g~~~~--~-~~~~-~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~--~-d~~~g~~~~l~~~~-- 341 (729)
|..+.-+.++.... . .... ..+ + ..+..++.|+||- ++++... .|..+|++ + ....|+.+.|+...
T Consensus 407 vv~~~~~g~~~~~~~~~~~v~~~~l~-g--~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~G~P~~L~~~~~~ 482 (573)
T PRK13614 407 IVAYRPTGVAEGAQAPTVTLTADWLA-G--RTVKELRVSREGVRALVISEQ-NGKSRVQVAGIVRNEDGTPRELTAPITL 482 (573)
T ss_pred EEEEecCCCcccccccceeecccccC-C--CeeEEEEECCCccEEEEEEEe-CCccEEEEEEEEeCCCCCeEEccCceec
Confidence 55554321222111 1 1111 111 1 2377889999998 7776654 45544542 3 23456666665221
Q ss_pred ---ccccCCcccccCcceeeeeecCCCCEEEEEE-EECCeEEEEEEECCCCceEeeccCCcceEEe
Q 004816 342 ---AEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLSLLDIPFTDIDNI 403 (729)
Q Consensus 342 ---~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s-~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~ 403 (729)
....+..|. ++..|++.. ..++...++++.+++|..+.+. +......+
T Consensus 483 ~~~~~~~sl~W~-------------~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~-~~~~~~~i 534 (573)
T PRK13614 483 AADSDADTGAWV-------------GDSTVVVTKASATSNVVPELLSVDAGQPQQLA-PWTGLTSI 534 (573)
T ss_pred ccCCCcceeEEc-------------CCCEEEEEeccCCCcceEEEEEeCCCCcccCC-CcCCeEEE
Confidence 122233454 445555554 4456667888888777655444 33334444
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.68 Score=49.65 Aligned_cols=234 Identities=10% Similarity=0.001 Sum_probs=111.0
Q ss_pred EECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 152 ~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
..++.+++ ...++.|+.+|..+ |+.. +..... .-...+. .++..+++...+ ..||.+|.++
T Consensus 63 v~~~~v~v-~~~~g~v~a~d~~t--G~~~W~~~~~~----~~~~~p~--v~~~~v~v~~~~---------g~l~ald~~t 124 (377)
T TIGR03300 63 VAGGKVYA-ADADGTVVALDAET--GKRLWRVDLDE----RLSGGVG--ADGGLVFVGTEK---------GEVIALDAED 124 (377)
T ss_pred EECCEEEE-ECCCCeEEEEEccC--CcEeeeecCCC----CcccceE--EcCCEEEEEcCC---------CEEEEEECCC
Confidence 34555544 44567899999877 5432 222211 0112233 356665544322 5799999988
Q ss_pred CceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 231 QNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 231 g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
|++.- ...+......|.. ++.++++.. ....|+.+|.+ +|+..+.......... ......|... ++
T Consensus 125 G~~~W~~~~~~~~~~~p~v--~~~~v~v~~--------~~g~l~a~d~~-tG~~~W~~~~~~~~~~-~~~~~sp~~~-~~ 191 (377)
T TIGR03300 125 GKELWRAKLSSEVLSPPLV--ANGLVVVRT--------NDGRLTALDAA-TGERLWTYSRVTPALT-LRGSASPVIA-DG 191 (377)
T ss_pred CcEeeeeccCceeecCCEE--ECCEEEEEC--------CCCeEEEEEcC-CCceeeEEccCCCcee-ecCCCCCEEE-CC
Confidence 87642 2212222333443 344555433 23459999998 7876443322221100 0011233332 34
Q ss_pred cEEEEEecCCCceEEEEEEcCCCeEEEeeccCccc--cCCcccccC-cceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 310 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF--SRPLWVFGI-NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 310 ~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~--~~~~w~~~~-~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
.+++.... ..++.+|+++|+..--....... ......... ..... .++.+|+.. .+| .|+.+|.+
T Consensus 192 ~v~~~~~~----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-----~~~~vy~~~-~~g--~l~a~d~~ 259 (377)
T TIGR03300 192 GVLVGFAG----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-----DGGQVYAVS-YQG--RVAALDLR 259 (377)
T ss_pred EEEEECCC----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-----ECCEEEEEE-cCC--EEEEEECC
Confidence 34433322 36888999888643211100000 000000000 00011 345566544 333 58888988
Q ss_pred CCceEeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 387 GHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 387 ~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+|+..--.. ..........++.+++.. ....++.+|.++|+.
T Consensus 260 tG~~~W~~~-~~~~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 260 SGRVLWKRD-ASSYQGPAVDDNRLYVTD----ADGVVVALDRRSGSE 301 (377)
T ss_pred CCcEEEeec-cCCccCceEeCCEEEEEC----CCCeEEEEECCCCcE
Confidence 887431111 111222234456665543 235799999988863
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0032 Score=65.97 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=39.8
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-CCeeeeeeeCCCCCeEEEEE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG-SDFYAFPRMDPRGERMAWIE 259 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~-~~~~~~~~~SPDG~~la~~~ 259 (729)
++.++|||||++|+.|+.+. -|-+++.++.+..-+... -+...-.+||||||+|+.-.
T Consensus 293 in~f~FS~DG~~LA~VSqDG---------fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQDG---------FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred ccceeEcCCCceEEEEecCc---------eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC
Confidence 46789999999999998753 577778876544333211 11223469999999987543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.047 Score=60.09 Aligned_cols=201 Identities=11% Similarity=0.044 Sum_probs=118.1
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEE--ECCEEEEEECCCCcEE
Q 004816 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI--FGDTVIFSNYKDQRLY 168 (729)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~ 168 (729)
..++|.- ...+.++.. ..|...+|-.... +...+++. ++. |+.....+.+ ..-.|+++..+++-+-
T Consensus 91 ~DVkW~~~~~NlIAT~s---~nG~i~vWdlnk~--~rnk~l~~--f~E----H~Rs~~~ldfh~tep~iliSGSQDg~vK 159 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCS---TNGVISVWDLNKS--IRNKLLTV--FNE----HERSANKLDFHSTEPNILISGSQDGTVK 159 (839)
T ss_pred hhcccccchhhhheeec---CCCcEEEEecCcc--ccchhhhH--hhh----hccceeeeeeccCCccEEEecCCCceEE
Confidence 4566665 444545443 3566666655432 23334332 111 2222333333 3446888888899999
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--eEEeeeCCCeeeee
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--IQVLVSGSDFYAFP 246 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--~~~lt~~~~~~~~~ 246 (729)
.||+.. ......... ....+.|++|||--...++...+. +.|-.+|+.--. .++++...+...-.
T Consensus 160 ~~DlR~--~~S~~t~~~---nSESiRDV~fsp~~~~~F~s~~ds--------G~lqlWDlRqp~r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 160 CWDLRS--KKSKSTFRS---NSESIRDVKFSPGYGNKFASIHDS--------GYLQLWDLRQPDRCEKKLTAHNGPVLCL 226 (839)
T ss_pred EEeeec--ccccccccc---cchhhhceeeccCCCceEEEecCC--------ceEEEeeccCchhHHHHhhcccCceEEE
Confidence 999986 555554443 135678999999444333333332 456677875322 34566666666667
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH 325 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~ 325 (729)
.|+|++.+||-.+ +. ..+.++|.. ++.......+... ..+..+.|-|+-+ .+.++.. -+...|+
T Consensus 227 nwhPnr~~lATGG--RD------K~vkiWd~t-~~~~~~~~tInTi-----apv~rVkWRP~~~~hLAtcsm-v~dtsV~ 291 (839)
T KOG0269|consen 227 NWHPNREWLATGG--RD------KMVKIWDMT-DSRAKPKHTINTI-----APVGRVKWRPARSYHLATCSM-VVDTSVH 291 (839)
T ss_pred eecCCCceeeecC--CC------ccEEEEecc-CCCccceeEEeec-----ceeeeeeeccCccchhhhhhc-cccceEE
Confidence 8999999988554 22 337777776 5554444333332 4567899999977 4434333 3667888
Q ss_pred EEEcCC
Q 004816 326 KWIESN 331 (729)
Q Consensus 326 ~~d~~~ 331 (729)
++|+.-
T Consensus 292 VWDvrR 297 (839)
T KOG0269|consen 292 VWDVRR 297 (839)
T ss_pred EEeecc
Confidence 888743
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0061 Score=67.25 Aligned_cols=90 Identities=10% Similarity=0.040 Sum_probs=64.6
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAF 245 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~ 245 (729)
.|.++|..+. .-+|.+-.. +.+.++++|||||++|+-.+-+ +.|.++|+.++.......-......
T Consensus 557 ~I~vvD~~t~-kvvR~f~gh----~nritd~~FS~DgrWlisasmD---------~tIr~wDlpt~~lID~~~vd~~~~s 622 (910)
T KOG1539|consen 557 SIRVVDVVTR-KVVREFWGH----GNRITDMTFSPDGRWLISASMD---------STIRTWDLPTGTLIDGLLVDSPCTS 622 (910)
T ss_pred eEEEEEchhh-hhhHHhhcc----ccceeeeEeCCCCcEEEEeecC---------CcEEEEeccCcceeeeEecCCccee
Confidence 6888888762 223444434 5789999999999998776553 5699999999876543333445567
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGY 276 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d 276 (729)
..+||.|.+||.+..+..+ ||++.
T Consensus 623 ls~SPngD~LAT~Hvd~~g-------IylWs 646 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVDQNG-------IYLWS 646 (910)
T ss_pred eEECCCCCEEEEEEecCce-------EEEEE
Confidence 8999999999988765533 66663
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.11 Score=51.41 Aligned_cols=200 Identities=19% Similarity=0.278 Sum_probs=99.1
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
+.++++.|.| .+.+|.+...+ + .|+.++.. |+...-.+-. + ...+-+-.+ ..++..+.++++.++|
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~---~--~i~els~~--G~vlr~i~l~-g----~~D~EgI~y-~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEP---G--EIYELSLD--GKVLRRIPLD-G----FGDYEGITY-LGNGRYVLSEERDQRL 88 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTT---T--EEEEEETT----EEEEEE-S-S-----SSEEEEEE--STTEEEEEETTTTEE
T ss_pred CCccccEEcCCCCeEEEEECCC---C--EEEEEcCC--CCEEEEEeCC-C----CCCceeEEE-ECCCEEEEEEcCCCcE
Confidence 4588999999 78888887543 2 46667655 3322111111 0 011111112 2345777788788899
Q ss_pred EEEeCCCCCCC-----CeecCCC-CCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc--CCCceEEeee-
Q 004816 168 YKHSIDSKDSS-----PLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL--NGQNIQVLVS- 238 (729)
Q Consensus 168 ~~~d~~~~~~~-----~~~lt~~-~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl--~~g~~~~lt~- 238 (729)
+.++++..+.. .++++-+ +......+-..+|+|.+++++.+.+..+ ..||.++. ..........
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-------~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-------KRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-------EEEEEEESTT-SS--EEEE-H
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-------hhhEEEccccCccceeecccc
Confidence 99988431011 1222211 1011134677899999999888877653 56888886 2222222111
Q ss_pred -------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecC-CCC--CccccccCceeCCC
Q 004816 239 -------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDP--TIVESPTEPKWSSK 308 (729)
Q Consensus 239 -------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~-~~~--~~~~~~~~~~wspD 308 (729)
.....++..+.|....|+.++ ++. ..|..+|. +|++.....+.. ... ........+++.+|
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS-~es------~~l~~~d~--~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~ 232 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILS-DES------RLLLELDR--QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD 232 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEE-TTT------TEEEEE-T--T--EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred ccccccceeccccceEEcCCCCeEEEEE-CCC------CeEEEECC--CCCEEEEEEeCCcccCcccccCCccEEEECCC
Confidence 112345678899888888887 443 34777774 466533333332 110 00012346789999
Q ss_pred CcEEEEEec
Q 004816 309 GELFFVTDR 317 (729)
Q Consensus 309 G~l~~~~~~ 317 (729)
|+||.++..
T Consensus 233 G~LYIvsEp 241 (248)
T PF06977_consen 233 GNLYIVSEP 241 (248)
T ss_dssp --EEEEETT
T ss_pred CCEEEEcCC
Confidence 988877754
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.12 Score=53.55 Aligned_cols=198 Identities=12% Similarity=0.091 Sum_probs=115.0
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCC-----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSS-----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~-----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
|..-....+.+...++.+.+||+.....+ ++.+... ....+.|.+|+|-.+.++....++ +.|.
T Consensus 185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~---h~~~VeDV~~h~~h~~lF~sv~dd--------~~L~ 253 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG---HEDVVEDVAWHPLHEDLFGSVGDD--------GKLM 253 (422)
T ss_pred cccccceeEeeccCCCcEEEEeccccccCCccccceEEeec---CCcceehhhccccchhhheeecCC--------CeEE
Confidence 33333344556666778999998751011 1222222 135578999999888877766554 5788
Q ss_pred EEEcCCC--ceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 225 AIALNGQ--NIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 225 ~~dl~~g--~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
++|+.++ ++..... ........+|+|=+..|.-+... ..+|.++|+. +=. .....+.+.. ..+.
T Consensus 254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~-------D~tV~LwDlR-nL~-~~lh~~e~H~----dev~ 320 (422)
T KOG0264|consen 254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA-------DKTVALWDLR-NLN-KPLHTFEGHE----DEVF 320 (422)
T ss_pred EEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC-------CCcEEEeech-hcc-cCceeccCCC----cceE
Confidence 9998853 3322222 23456678999977766555422 3458999987 332 2345566665 5678
Q ss_pred CceeCCCCc-EEEEEecCCCceEEEEEEcCCCeE----------EEeec---cCccccCCcccccCcceeeeeecCCCCE
Q 004816 302 EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV----------LAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNL 367 (729)
Q Consensus 302 ~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~----------~~l~~---~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 367 (729)
.+.|||+-. ++..+.. .+..++|-++--+.+. ..|.. ....+.+..|.| ..-.
T Consensus 321 ~V~WSPh~etvLASSg~-D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp------------~ePW 387 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGT-DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP------------NEPW 387 (422)
T ss_pred EEEeCCCCCceeEeccc-CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC------------CCCe
Confidence 899999987 6666554 4544454332222221 11211 111223334443 5567
Q ss_pred EEEEEEECCeEEEEEEE
Q 004816 368 IACSYRQNGRSYLGILD 384 (729)
Q Consensus 368 l~~~s~~~g~~~ly~~d 384 (729)
++.+..+++.-+||.+.
T Consensus 388 ~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 388 TIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEecCCceEEEeecc
Confidence 78888888888888764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.1 Score=57.29 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=97.0
Q ss_pred cCCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 145 YGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 145 ~~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
|.|+.+.++.+ .++|... ...|-..|+.+ +... ++...........+..++||++.|+..... ..|
T Consensus 20 YtGG~~~~s~nG~~L~t~~-~d~Vi~idv~t--~~~~-l~s~~~ed~d~ita~~l~~d~~~L~~a~rs---------~ll 86 (775)
T KOG0319|consen 20 YTGGPVAWSSNGQHLYTAC-GDRVIIIDVAT--GSIA-LPSGSNEDEDEITALALTPDEEVLVTASRS---------QLL 86 (775)
T ss_pred ecCCceeECCCCCEEEEec-CceEEEEEccC--Ccee-cccCCccchhhhheeeecCCccEEEEeecc---------ceE
Confidence 55555666633 5556542 33588888887 5442 554433334567888999999987766542 457
Q ss_pred EEEEcCCCceEEeee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 224 VAIALNGQNIQVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 224 ~~~dl~~g~~~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
-++++.+|+..+.-. +.......+++|-|..|+-.+ ....+-++|++ .+.. ...+.+.. +-+.
T Consensus 87 rv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtgg--------aD~~v~VWdi~-~~~~--th~fkG~g----GvVs 151 (775)
T KOG0319|consen 87 RVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGG--------ADGRVKVWDIK-NGYC--THSFKGHG----GVVS 151 (775)
T ss_pred EEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEecc--------ccceEEEEEee-CCEE--EEEecCCC----ceEE
Confidence 777888886544422 344555678999995555333 23448888888 5654 45667765 5556
Q ss_pred CceeCCCCc--EEEEEecCCCceEEEEEEcCCCeE
Q 004816 302 EPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 302 ~~~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
...|.|+-. +++.... ++ .+..+|..++..
T Consensus 152 sl~F~~~~~~~lL~sg~~-D~--~v~vwnl~~~~t 183 (775)
T KOG0319|consen 152 SLLFHPHWNRWLLASGAT-DG--TVRVWNLNDKRT 183 (775)
T ss_pred EEEeCCccchhheeecCC-Cc--eEEEEEcccCch
Confidence 677777754 3444333 34 455566655433
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.051 Score=58.89 Aligned_cols=156 Identities=13% Similarity=0.104 Sum_probs=94.4
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
+++++++.|++..-.+..||.+..+.. -+.+.+...+. .........|+-|+..++++..+. .+|..+++
T Consensus 389 aiSPdg~~Ia~st~~~~~iy~L~~~~~-vk~~~v~~~~~-~~~~a~~i~ftid~~k~~~~s~~~--------~~le~~el 458 (691)
T KOG2048|consen 389 AISPDGNLIAISTVSRTKIYRLQPDPN-VKVINVDDVPL-ALLDASAISFTIDKNKLFLVSKNI--------FSLEEFEL 458 (691)
T ss_pred ccCCCCCEEEEeeccceEEEEeccCcc-eeEEEeccchh-hhccceeeEEEecCceEEEEeccc--------ceeEEEEe
Confidence 455667788887655657777776531 11222222110 012335667899999988887333 56888888
Q ss_pred CCCceEEeee-----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 229 NGQNIQVLVS-----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 229 ~~g~~~~lt~-----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
++...+.+.. .-...+...-||||++||.++ ....|++++++ +++... +....+ ..+...
T Consensus 459 ~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~--------t~g~I~v~nl~-~~~~~~--l~~rln----~~vTa~ 523 (691)
T KOG2048|consen 459 ETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS--------TRGQIFVYNLE-TLESHL--LKVRLN----IDVTAA 523 (691)
T ss_pred cCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe--------ccceEEEEEcc-cceeec--chhccC----cceeee
Confidence 8765444422 123455678899999999888 23559999998 665422 222333 455667
Q ss_pred eeCCCCc--EEEEEecCCCceEEEEEEcCCCe
Q 004816 304 KWSSKGE--LFFVTDRKNGFWNLHKWIESNNE 333 (729)
Q Consensus 304 ~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~ 333 (729)
.++|..+ ++..... .++|.+|.+..+
T Consensus 524 ~~~~~~~~~lvvats~----nQv~efdi~~~~ 551 (691)
T KOG2048|consen 524 AFSPFVRNRLVVATSN----NQVFEFDIEARN 551 (691)
T ss_pred eccccccCcEEEEecC----CeEEEEecchhh
Confidence 7886654 5444333 568888874443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.032 Score=60.53 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=70.9
Q ss_pred ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC-ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 190 ~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
+..+...+.||+|+.|+-.+.....+ ...|++++..+= +...|....-..+...|||||++|+-++.|+.
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~e----hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt----- 595 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKE----HAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT----- 595 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCcc----ceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-----
Confidence 45667889999999776654433222 467888888763 33345544456678999999999998885542
Q ss_pred CcEEEEEEecCCCCee-eeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEE
Q 004816 269 KAELWVGYISENGDVY-KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~-~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d 328 (729)
..||-. ..+-... +......+. .-+-.-.|+||++.++++.+ ...-.+|...
T Consensus 596 -~sl~~~--~~~~~~e~~fa~~k~Ht----RIIWdcsW~pde~~FaTaSR-DK~VkVW~~~ 648 (764)
T KOG1063|consen 596 -VSLYEV--QEDIKDEFRFACLKAHT----RIIWDCSWSPDEKYFATASR-DKKVKVWEEP 648 (764)
T ss_pred -EEeeee--ecccchhhhhccccccc----eEEEEcccCcccceeEEecC-CceEEEEecc
Confidence 224332 3111110 111122222 33445679999975445544 4445566543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.17 Score=55.53 Aligned_cols=227 Identities=10% Similarity=0.014 Sum_probs=119.8
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCC--eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSP--LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~--~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
.+++....++.+++||+.. +.. ..+..+ ...+....+++|+..++++..+. .++++|+..-+.
T Consensus 162 ~lL~sg~~D~~v~vwnl~~--~~tcl~~~~~H----~S~vtsL~~~~d~~~~ls~~RDk---------vi~vwd~~~~~~ 226 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLND--KRTCLHTMILH----KSAVTSLAFSEDSLELLSVGRDK---------VIIVWDLVQYKK 226 (775)
T ss_pred hheeecCCCceEEEEEccc--CchHHHHHHhh----hhheeeeeeccCCceEEEeccCc---------EEEEeehhhhhh
Confidence 3556666678999999986 433 112222 23457788999999988886643 577788854332
Q ss_pred EEeeeCCCeeeeeeeCC---CCCe-EEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccC-ceeCCC
Q 004816 234 QVLVSGSDFYAFPRMDP---RGER-MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE-PKWSSK 308 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SP---DG~~-la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~-~~wspD 308 (729)
..+.+-.....+...-+ +|+. +.++. ... ..+..+|.+ ++.....+.-+..+ . +.+ ..-..+
T Consensus 227 l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta-G~~------g~~~~~d~e-s~~~~~~~~~~~~~----e-~~~~~~~~~~ 293 (775)
T KOG0319|consen 227 LKTLPLYESLESVVRLREELGGKGEYIITA-GGS------GVVQYWDSE-SGKCVYKQRQSDSE----E-IDHLLAIESM 293 (775)
T ss_pred hheechhhheeeEEEechhcCCcceEEEEe-cCC------ceEEEEecc-cchhhhhhccCCch----h-hhcceecccc
Confidence 22222222222233323 2331 23333 222 236667766 55532211111111 1 222 223345
Q ss_pred CcEEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
++++.++.+ .+|+.+|.++.++. +|.....++. ++.|+.+ +.+.++ .+...+.-++| +..+
T Consensus 294 ~~~l~vtae----Qnl~l~d~~~l~i~k~ivG~ndEI~---------Dm~~lG~--e~~~la-VATNs~~lr~y--~~~~ 355 (775)
T KOG0319|consen 294 SQLLLVTAE----QNLFLYDEDELTIVKQIVGYNDEIL---------DMKFLGP--EESHLA-VATNSPELRLY--TLPT 355 (775)
T ss_pred CceEEEEcc----ceEEEEEccccEEehhhcCCchhhe---------eeeecCC--ccceEE-EEeCCCceEEE--ecCC
Confidence 555555544 56888888776644 3333222332 3334421 334444 44445666666 6666
Q ss_pred CceEeeccCCcceEEee-eeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 388 HSLSLLDIPFTDIDNIT-LGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 388 g~~~~lt~~~~~v~~~~-~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
-.-..+......+-++. .+.+ .++.+.+.+..-.+|+++-+
T Consensus 356 ~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 356 SYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred CceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCC
Confidence 66565555566677774 3333 66667777777789998533
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0043 Score=41.87 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=24.4
Q ss_pred eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 180 LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 180 ~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
+++|.. ......+.|||||++|+|++..... ...+||+
T Consensus 2 ~~~t~~----~~~~~~p~~SpDGk~i~f~s~~~~~----g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNS----PGDDGSPAWSPDGKYIYFTSNRNDR----GSFDIYV 39 (39)
T ss_dssp EEES-S----SSSEEEEEE-TTSSEEEEEEECT------SSEEEEE
T ss_pred cCcccC----CccccCEEEecCCCEEEEEecCCCC----CCcCEEC
Confidence 456665 2345788999999999999876621 1356774
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.17 Score=49.82 Aligned_cols=120 Identities=16% Similarity=0.057 Sum_probs=69.5
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
..+....|+|||..++-...+ .+|++++..+-. .-.+....+...+..|.+||+.|+-.+.
T Consensus 48 geI~~~~F~P~gs~~aSgG~D---------r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt-------- 110 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASGGSD---------RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT-------- 110 (338)
T ss_pred ceEEEEEECCCCCeEeecCCc---------ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC--------
Confidence 456777899999975543322 468888866432 2234444556678899999999876662
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEe
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI 337 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l 337 (729)
...++.+|++ +|+. .+...+.. .-+..+.-+.-|- ++....+ .+...| +|..+.+...+
T Consensus 111 Dk~v~~wD~~-tG~~--~rk~k~h~----~~vNs~~p~rrg~~lv~Sgsd-D~t~kl--~D~R~k~~~~t 170 (338)
T KOG0265|consen 111 DKTVRGWDAE-TGKR--IRKHKGHT----SFVNSLDPSRRGPQLVCSGSD-DGTLKL--WDIRKKEAIKT 170 (338)
T ss_pred CceEEEEecc-ccee--eehhcccc----ceeeecCccccCCeEEEecCC-CceEEE--Eeecccchhhc
Confidence 3559999998 7765 33333332 2222233222344 4444444 454444 56655443333
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.79 Score=48.16 Aligned_cols=147 Identities=10% Similarity=0.054 Sum_probs=90.3
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCC-CCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~-~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
+++++..-+..|.+-++|..+ . ..+++-.. ...+.-..|+|+++.++...+++ ..+-.+|+++..
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah----~apv~~~~f~~~d~t~l~s~sDd--------~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKS--RVILRQLYAH----QAPVHVTKFSPQDNTMLVSGSDD--------KVVKYWDLSTAY 144 (487)
T ss_pred CCeEEEccCCcCcEEEecccc--HHHHHHHhhc----cCceeEEEecccCCeEEEecCCC--------ceEEEEEcCCcE
Confidence 557777777788999999653 2 23344333 23445567999998876666554 234455777666
Q ss_pred eE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 233 IQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 233 ~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
+. .|....+....-.|+|-...|+++..-+ ..|.++|+. ..+ .+. ..-+.+ ..+..+.+-|.|.+
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYD-------g~vrl~DtR-~~~-~~v-~elnhg----~pVe~vl~lpsgs~ 210 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYD-------GKVRLWDTR-SLT-SRV-VELNHG----CPVESVLALPSGSL 210 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCC-------ceEEEEEec-cCC-cee-EEecCC----CceeeEEEcCCCCE
Confidence 52 2334455666678999888898877322 337777766 332 122 222232 45567888898875
Q ss_pred EEEEecCCCceEEEEEEcCCC
Q 004816 312 FFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g 332 (729)
+..+ |...+-+||+.+|
T Consensus 211 iasA----gGn~vkVWDl~~G 227 (487)
T KOG0310|consen 211 IASA----GGNSVKVWDLTTG 227 (487)
T ss_pred EEEc----CCCeEEEEEecCC
Confidence 5553 3356677788754
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.13 Score=50.84 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=78.2
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 317 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~ 317 (729)
..+..+..+||.|||+||-+..| ..|.++++. +=+.+..+.+...-+- .....++|+||-+ +++...+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~D--------r~Ir~w~~~-DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGD--------RSIRLWDVR-DFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCC--------ceEEEEecc-hhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEcc
Confidence 34566788999999999988833 337777776 3222222222111100 2346789999998 6665554
Q ss_pred CCCceEEEEEEcCC-Ce-EEEeeccC-ccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec
Q 004816 318 KNGFWNLHKWIESN-NE-VLAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 318 ~~g~~~l~~~d~~~-g~-~~~l~~~~-~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
.....+|.++-.+ |. ....+..+ -++.... ....-++... ++..++.+...+. .|.+++++|+.+..+.
T Consensus 154 -g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh-~v~~i~iGiA----~~~k~imsas~dt--~i~lw~lkGq~L~~id 225 (420)
T KOG2096|consen 154 -GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKH-QVDIINIGIA----GNAKYIMSASLDT--KICLWDLKGQLLQSID 225 (420)
T ss_pred -CCEEEEEEeeecccCCCCcccccccccccchhc-ccceEEEeec----CCceEEEEecCCC--cEEEEecCCceeeeec
Confidence 4445555554322 11 11111111 0111100 1111123332 4555555554444 4555577777777776
Q ss_pred cCCcc-eEEeeeeCCEEEEEEe
Q 004816 395 IPFTD-IDNITLGNDCLFVEGA 415 (729)
Q Consensus 395 ~~~~~-v~~~~~~~~~~~~~~~ 415 (729)
+.... .....+++++++..++
T Consensus 226 tnq~~n~~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 226 TNQSSNYDAAVSPDGRFIAVSG 247 (420)
T ss_pred cccccccceeeCCCCcEEEEec
Confidence 55433 2233445556655443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.56 Score=46.41 Aligned_cols=189 Identities=13% Similarity=0.006 Sum_probs=96.1
Q ss_pred ECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC
Q 004816 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (729)
Q Consensus 153 ~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g 231 (729)
+++.+++. ..++.|+.+|..+ |+.. +.... ..+... -..++..|++...+ ..|+.+|..+|
T Consensus 35 ~~~~v~~~-~~~~~l~~~d~~t--G~~~W~~~~~-----~~~~~~-~~~~~~~v~v~~~~---------~~l~~~d~~tG 96 (238)
T PF13360_consen 35 DGGRVYVA-SGDGNLYALDAKT--GKVLWRFDLP-----GPISGA-PVVDGGRVYVGTSD---------GSLYALDAKTG 96 (238)
T ss_dssp ETTEEEEE-ETTSEEEEEETTT--SEEEEEEECS-----SCGGSG-EEEETTEEEEEETT---------SEEEEEETTTS
T ss_pred eCCEEEEE-cCCCEEEEEECCC--CCEEEEeecc-----ccccce-eeecccccccccce---------eeeEecccCCc
Confidence 55555444 4677899999877 5432 22221 011111 13356666555421 47999998888
Q ss_pred ceEEe-eeCC----CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccc-----ccc
Q 004816 232 NIQVL-VSGS----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE-----SPT 301 (729)
Q Consensus 232 ~~~~l-t~~~----~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~-----~~~ 301 (729)
++.-- .... .....+....+|+.+++.. ....|+.+|++ +|+..+............. ...
T Consensus 97 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~ 167 (238)
T PF13360_consen 97 KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT--------SSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDING 167 (238)
T ss_dssp CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE--------TCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEE
T ss_pred ceeeeeccccccccccccccCceEecCEEEEEe--------ccCcEEEEecC-CCcEEEEeecCCCCCCcceeeeccccc
Confidence 76422 2211 1222334444577776655 23569999998 8886554444221100000 012
Q ss_pred CceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEE
Q 004816 302 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 381 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly 381 (729)
.+... +|.++ .... .+. +..+|..+|+..- ......... .+.. +++.+|+.. .+ .+|+
T Consensus 168 ~~~~~-~~~v~-~~~~-~g~--~~~~d~~tg~~~w-~~~~~~~~~----------~~~~---~~~~l~~~~-~~--~~l~ 225 (238)
T PF13360_consen 168 SPVIS-DGRVY-VSSG-DGR--VVAVDLATGEKLW-SKPISGIYS----------LPSV---DGGTLYVTS-SD--GRLY 225 (238)
T ss_dssp EEECC-TTEEE-EECC-TSS--EEEEETTTTEEEE-EECSS-ECE----------CEEC---CCTEEEEEE-TT--TEEE
T ss_pred ceEEE-CCEEE-EEcC-CCe--EEEEECCCCCEEE-EecCCCccC----------Ccee---eCCEEEEEe-CC--CEEE
Confidence 23332 44444 4433 232 6666998887442 211111000 0111 667777666 44 4788
Q ss_pred EEECCCCce
Q 004816 382 ILDDFGHSL 390 (729)
Q Consensus 382 ~~d~~~g~~ 390 (729)
.+|+.+|+.
T Consensus 226 ~~d~~tG~~ 234 (238)
T PF13360_consen 226 ALDLKTGKV 234 (238)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCCE
Confidence 899999875
|
... |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.12 Score=57.65 Aligned_cols=200 Identities=8% Similarity=-0.019 Sum_probs=108.6
Q ss_pred CCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.+..++|+.+..++++.-+..+-+|++.. .+.-.+-.+ ...+..++|.|-..+ +|++..-. +.+-+
T Consensus 371 DILDlSWSKn~fLLSSSMDKTVRLWh~~~--~~CL~~F~H----ndfVTcVaFnPvDDr-yFiSGSLD-------~KvRi 436 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMDKTVRLWHPGR--KECLKVFSH----NDFVTCVAFNPVDDR-YFISGSLD-------GKVRL 436 (712)
T ss_pred hheecccccCCeeEeccccccEEeecCCC--cceeeEEec----CCeeEEEEecccCCC-cEeecccc-------cceEE
Confidence 45567888888888888888788888875 554444444 355688889995444 45543321 33555
Q ss_pred EEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeee---eEEecCCCCCccccccC
Q 004816 226 IALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK---RVCVAGFDPTIVESPTE 302 (729)
Q Consensus 226 ~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~---~~~~~~~~~~~~~~~~~ 302 (729)
+++...++..-+.-.+.++..+++|||+..+.-.. ....+.|+.. +-++.. +.+-...... ..-+.+
T Consensus 437 WsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~--------~G~C~fY~t~-~lk~~~~~~I~~~~~Kk~~-~~rITG 506 (712)
T KOG0283|consen 437 WSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTF--------NGYCRFYDTE-GLKLVSDFHIRLHNKKKKQ-GKRITG 506 (712)
T ss_pred eecCcCeeEeehhhhhhheeEEeccCCceEEEEEe--------ccEEEEEEcc-CCeEEEeeeEeeccCcccc-Cceeee
Confidence 56655555444444566788999999997654442 2234555544 222211 1111111100 023455
Q ss_pred ceeCCCC--cEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 303 PKWSSKG--ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 303 ~~wspDG--~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
+++.|-. ++++++++ .+|-++|..+.++.....+....... ..-.|.. ||++|+..+ ++....|
T Consensus 507 ~Q~~p~~~~~vLVTSnD----SrIRI~d~~~~~lv~KfKG~~n~~SQ------~~Asfs~---Dgk~IVs~s-eDs~VYi 572 (712)
T KOG0283|consen 507 LQFFPGDPDEVLVTSND----SRIRIYDGRDKDLVHKFKGFRNTSSQ------ISASFSS---DGKHIVSAS-EDSWVYI 572 (712)
T ss_pred eEecCCCCCeEEEecCC----CceEEEeccchhhhhhhcccccCCcc------eeeeEcc---CCCEEEEee-cCceEEE
Confidence 6666532 37777766 45666676444333222222111111 1113332 888888877 5555556
Q ss_pred EEE
Q 004816 381 GIL 383 (729)
Q Consensus 381 y~~ 383 (729)
|.+
T Consensus 573 W~~ 575 (712)
T KOG0283|consen 573 WKN 575 (712)
T ss_pred EeC
Confidence 654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.7 Score=46.83 Aligned_cols=182 Identities=10% Similarity=0.030 Sum_probs=88.1
Q ss_pred eEEEEEEcCCCceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 221 TEIVAIALNGQNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
..|+.+|.++|+..= ..........|... | .+|++.. ....|+.+|.+ +|+..+.......... ...
T Consensus 130 g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~-~~v~v~~--------~~g~l~ald~~-tG~~~W~~~~~~~~~~-~~~ 197 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVAGEALSRPVVS-D-GLVLVHT--------SNGMLQALNES-DGAVKWTVNLDVPSLT-LRG 197 (394)
T ss_pred CEEEEEECCCCCCcccccCCCceecCCEEE-C-CEEEEEC--------CCCEEEEEEcc-CCCEeeeecCCCCccc-ccC
Confidence 579999999887532 21122233445543 3 3455433 23459999998 8886554332211100 001
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCC---cccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP---LWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~---~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
...|... +|.+++... ...++.+|+++|+..--.......... ........-.. .++.+|+.+. +|
T Consensus 198 ~~sP~v~-~~~v~~~~~----~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-----~~~~vy~~~~-~g 266 (394)
T PRK11138 198 ESAPATA-FGGAIVGGD----NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-----VGGVVYALAY-NG 266 (394)
T ss_pred CCCCEEE-CCEEEEEcC----CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-----ECCEEEEEEc-CC
Confidence 1334432 343444332 245788888888643211100000000 00000000011 3456666543 33
Q ss_pred eEEEEEEECCCCceEeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 377 RSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 377 ~~~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.|+.+|..+|+.. -.........+...++.+++... ...++.+|.++|+
T Consensus 267 --~l~ald~~tG~~~-W~~~~~~~~~~~~~~~~vy~~~~----~g~l~ald~~tG~ 315 (394)
T PRK11138 267 --NLVALDLRSGQIV-WKREYGSVNDFAVDGGRIYLVDQ----NDRVYALDTRGGV 315 (394)
T ss_pred --eEEEEECCCCCEE-EeecCCCccCcEEECCEEEEEcC----CCeEEEEECCCCc
Confidence 6899999888743 11111122223445666665442 2579999998886
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=1.9 Score=46.62 Aligned_cols=227 Identities=11% Similarity=0.058 Sum_probs=111.4
Q ss_pred EEECCEEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 151 ~~~~~~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
..+++.+++. ..++.|+.+|.++ |+. .+.... ......|.+. +..|++. .. ...|+.+|++
T Consensus 117 ~v~~~~v~v~-~~~g~l~ald~~t--G~~~W~~~~~----~~~~ssP~v~--~~~v~v~-~~--------~g~l~ald~~ 178 (394)
T PRK11138 117 TVAGGKVYIG-SEKGQVYALNAED--GEVAWQTKVA----GEALSRPVVS--DGLVLVH-TS--------NGMLQALNES 178 (394)
T ss_pred EEECCEEEEE-cCCCEEEEEECCC--CCCcccccCC----CceecCCEEE--CCEEEEE-CC--------CCEEEEEEcc
Confidence 4456666554 4567899999987 543 222211 1122334443 3444433 22 2579999999
Q ss_pred CCceE-EeeeC-CC----eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc-----cc
Q 004816 230 GQNIQ-VLVSG-SD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI-----VE 298 (729)
Q Consensus 230 ~g~~~-~lt~~-~~----~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~-----~~ 298 (729)
+|+.. +.... .. ....|... +..+++.. ....++.+|.+ +|+..+........... ..
T Consensus 179 tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~--------~~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 179 DGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGG--------DNGRVSAVLME-QGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred CCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEc--------CCCEEEEEEcc-CChhhheeccccCCCccchhcccc
Confidence 98764 22211 11 11234432 23454433 23458888888 77754432221110000 00
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeE
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 378 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~ 378 (729)
....|... |+.+|+.... ..|+.+|+.+|+..--... ..+ ..... .++.+|+... + .
T Consensus 248 ~~~sP~v~-~~~vy~~~~~----g~l~ald~~tG~~~W~~~~----~~~------~~~~~-----~~~~vy~~~~-~--g 304 (394)
T PRK11138 248 VDTTPVVV-GGVVYALAYN----GNLVALDLRSGQIVWKREY----GSV------NDFAV-----DGGRIYLVDQ-N--D 304 (394)
T ss_pred cCCCcEEE-CCEEEEEEcC----CeEEEEECCCCCEEEeecC----CCc------cCcEE-----ECCEEEEEcC-C--C
Confidence 01233332 4545554433 3689999998864321111 110 01111 5567777653 3 3
Q ss_pred EEEEEECCCCceEe-ecc-CCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 379 YLGILDDFGHSLSL-LDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 379 ~ly~~d~~~g~~~~-lt~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+|+.++.++|+..= ... ...........++.+++ .+. ...++.+|.++|+.
T Consensus 305 ~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v-~~~---~G~l~~ld~~tG~~ 357 (394)
T PRK11138 305 RVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVV-GDS---EGYLHWINREDGRF 357 (394)
T ss_pred eEEEEECCCCcEEEcccccCCCcccCCEEECCEEEE-EeC---CCEEEEEECCCCCE
Confidence 68999998886421 111 11112222233555544 332 24788999888874
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.28 Score=50.89 Aligned_cols=195 Identities=11% Similarity=0.075 Sum_probs=109.9
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCe---------ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPL---------PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~---------~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
.|+-+....+++|++|.....+.+. +|.... ..-.+.+|++.-..-.....++ +.++++
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~----~eg~glsWn~~~~g~Lls~~~d--------~~i~lw 205 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE----KEGYGLSWNRQQEGTLLSGSDD--------HTICLW 205 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec----ccccccccccccceeEeeccCC--------CcEEEE
Confidence 4666655667899999864101121 222221 1123467888555433333322 457777
Q ss_pred EcCCCc-------eEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccc
Q 004816 227 ALNGQN-------IQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 298 (729)
Q Consensus 227 dl~~g~-------~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~ 298 (729)
|+.... ++.+.. ..+.....+|.|--+.|+ .+.. +...|.+.|+. .++........... .
T Consensus 206 di~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF-~sv~------dd~~L~iwD~R-~~~~~~~~~~~ah~----~ 273 (422)
T KOG0264|consen 206 DINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLF-GSVG------DDGKLMIWDTR-SNTSKPSHSVKAHS----A 273 (422)
T ss_pred eccccccCCccccceEEeecCCcceehhhccccchhhh-eeec------CCCeEEEEEcC-CCCCCCcccccccC----C
Confidence 776522 122223 334566789999655553 3322 24559999987 33322233444444 4
Q ss_pred cccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEE--eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC
Q 004816 299 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA--IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 375 (729)
Q Consensus 299 ~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~--l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~ 375 (729)
.+..++|+|=+. |+.+... . ..|.++|+..-.... +.....++....|+| ....++.++..+
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~-D--~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP------------h~etvLASSg~D 338 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSA-D--KTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP------------HNETVLASSGTD 338 (422)
T ss_pred ceeEEEeCCCCCceEEeccC-C--CcEEEeechhcccCceeccCCCcceEEEEeCC------------CCCceeEecccC
Confidence 566788999777 5555443 3 346666775533322 223344555667777 667788888889
Q ss_pred CeEEEEEEECCCCc
Q 004816 376 GRSYLGILDDFGHS 389 (729)
Q Consensus 376 g~~~ly~~d~~~g~ 389 (729)
++..+|-++--+++
T Consensus 339 ~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEE 352 (422)
T ss_pred CcEEEEeccccccc
Confidence 99888877654444
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.31 Score=48.47 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=68.7
Q ss_pred EEEEEcCCCceEEeeeCC---C---eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeee--EEecCCCC
Q 004816 223 IVAIALNGQNIQVLVSGS---D---FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--VCVAGFDP 294 (729)
Q Consensus 223 l~~~dl~~g~~~~lt~~~---~---~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~--~~~~~~~~ 294 (729)
|.++|.-+|+.+.-...- + .....+|||||.+|+ .. .+..|.++|+...|..-++ ++..+..
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aG--------ykrcirvFdt~RpGr~c~vy~t~~~~k~- 204 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AG--------YKRCIRVFDTSRPGRDCPVYTTVTKGKF- 204 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ec--------ccceEEEeeccCCCCCCcchhhhhcccc-
Confidence 667787777766433221 1 123579999999985 55 2445899998644542222 2222221
Q ss_pred CccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEE
Q 004816 295 TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 372 (729)
Q Consensus 295 ~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s 372 (729)
....-++..+++|-.. .+..... .....||.. .++.+-.+. ...+.++...|.+ ++++||.-+
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY-~q~~giy~~--~~~~pl~llggh~gGvThL~~~e------------dGn~lfsGa 269 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSY-GQRVGIYND--DGRRPLQLLGGHGGGVTHLQWCE------------DGNKLFSGA 269 (406)
T ss_pred cccceeeeeeccCCCCcceeeecc-cceeeeEec--CCCCceeeecccCCCeeeEEecc------------CcCeecccc
Confidence 1113345677888543 3333322 223445543 344444444 3445556666665 677776655
Q ss_pred EECCe
Q 004816 373 RQNGR 377 (729)
Q Consensus 373 ~~~g~ 377 (729)
..+..
T Consensus 270 Rk~dk 274 (406)
T KOG2919|consen 270 RKDDK 274 (406)
T ss_pred cCCCe
Confidence 54443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.49 Score=50.48 Aligned_cols=197 Identities=12% Similarity=0.047 Sum_probs=106.9
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE---eeeCCCeeeeeeeCCCCCeEEEEEecCCCCC---
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV---LVSGSDFYAFPRMDPRGERMAWIEWHHPNMP--- 266 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~---lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~--- 266 (729)
+.++.|||-+.-|+|-.......| ..+-++.+-+++..+ |..- .....-|-..|++|+|--..+....
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~p----arvtL~evPs~~~iRt~nlfnV--sDckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNIP----ARVTLMEVPSKREIRTKNLFNV--SDCKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred ccCcccCCCcceEEEEcccccCCc----ceEEEEecCccceeeeccceee--eccEEEeccCCcEEEEEEEeeccccccc
Confidence 478999999999999865544332 455666665554322 2221 1234579999999998764443221
Q ss_pred -CCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec-CCCceEEEEEEcCCCeEEEeeccC-c
Q 004816 267 -WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR-KNGFWNLHKWIESNNEVLAIYSLD-A 342 (729)
Q Consensus 267 -~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~-~~g~~~l~~~d~~~g~~~~l~~~~-~ 342 (729)
+.+.+|+.++-. . .++....-. ..+-..+|-|.|. +..++.. ....-..|.+....++.+.+...+ .
T Consensus 423 ~f~n~eIfrireK---d-Ipve~velk-----e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~ 493 (698)
T KOG2314|consen 423 QFSNLEIFRIREK---D-IPVEVVELK-----ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK 493 (698)
T ss_pred eEeeEEEEEeecc---C-CCceeeecc-----hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc
Confidence 122344444322 1 122222221 3456788999998 6665544 122344555554445554443222 2
Q ss_pred cccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc-ceEEe-eeeCCEEEEEEeC
Q 004816 343 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT-DIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 343 ~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~-~v~~~-~~~~~~~~~~~~~ 416 (729)
......|+| .|+.+++..-......|+.+|++-...+....+.. ....+ .++.+++++.+++
T Consensus 494 ~~N~vfwsP------------kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 494 FANTVFWSP------------KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred ccceEEEcC------------CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 223345555 77777666655556678888887544444433321 22333 4555666655553
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.52 Score=53.12 Aligned_cols=164 Identities=11% Similarity=0.188 Sum_probs=92.7
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-----EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-----QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 266 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-----~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~ 266 (729)
....++.|+||+.++++..+. ..||+-++.++.. +.+..+ .....|.|.++| +| |+. +...
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~--------~~l~vg~~~~~~~~~~~~~~~~~~-~~Lt~PS~d~~g-~v-Wtv-d~~~-- 429 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADG--------DSVYVGSLTPGASIGVHSWGVTAD-GRLTSPSWDGRG-DL-WVV-DRDP-- 429 (599)
T ss_pred CccceEEcCCCceEEEEcCCC--------cEEEEeccCCCCccccccceeecc-CcccCCcCcCCC-CE-EEe-cCCC--
Confidence 456788999999999885422 4677766544332 334443 346789999998 45 443 2211
Q ss_pred CCCcE-EEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEE--EEEc-CCCeEEEee---
Q 004816 267 WDKAE-LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIE-SNNEVLAIY--- 338 (729)
Q Consensus 267 ~~~~~-l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~--~~d~-~~g~~~~l~--- 338 (729)
...+ |.++. . +|+...+.. .... + ..+..++.|+||- ++++... .+..+|+ .+-- ..|+ +.|+
T Consensus 430 -~~~~vl~v~~-~-~G~~~~V~~-~~l~-g--~~I~~lrvSrDG~RvAvv~~~-~g~~~v~va~V~R~~~G~-~~l~~~~ 500 (599)
T PRK13613 430 -ADPRLLWLLQ-G-DGEPVEVRT-PELD-G--HRVVAVRVARDGVRVALIVEK-DGRRSLQIGRIVRDAKAV-VSVEEFR 500 (599)
T ss_pred -CCceEEEEEc-C-CCcEEEeec-cccC-C--CEeEEEEECCCccEEEEEEec-CCCcEEEEEEEEeCCCCc-EEeeccE
Confidence 1223 44544 2 455433222 1221 1 2578889999998 7777665 4444443 3333 3344 4443
Q ss_pred ---ccCccccCCcccccCcceeeeeecCCCCEEEEEE-EECCeEEEEEEECCCCceE
Q 004816 339 ---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 339 ---~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s-~~~g~~~ly~~d~~~g~~~ 391 (729)
.......+..|. ++..|++.. ...+...+|++++++....
T Consensus 501 ~l~~~l~~v~~~~W~-------------~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~ 544 (599)
T PRK13613 501 SLAPELEDVTDMSWA-------------GDSQLVVLGREEGGVQQARYVQVDGSTPP 544 (599)
T ss_pred EeccCCCccceeEEc-------------CCCEEEEEeccCCCCcceEEEecCCcCcc
Confidence 122223344454 555666643 4455778999999876654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.30 E-value=2 Score=45.98 Aligned_cols=227 Identities=11% Similarity=0.040 Sum_probs=108.7
Q ss_pred EEECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 151 ~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
..+++.++ ....++.||.+|.++ |+.. +.... ......+.. ++..+++... ...|+.+|++
T Consensus 102 ~v~~~~v~-v~~~~g~l~ald~~t--G~~~W~~~~~----~~~~~~p~v--~~~~v~v~~~---------~g~l~a~d~~ 163 (377)
T TIGR03300 102 GADGGLVF-VGTEKGEVIALDAED--GKELWRAKLS----SEVLSPPLV--ANGLVVVRTN---------DGRLTALDAA 163 (377)
T ss_pred EEcCCEEE-EEcCCCEEEEEECCC--CcEeeeeccC----ceeecCCEE--ECCEEEEECC---------CCeEEEEEcC
Confidence 34455554 444577899999977 5432 22221 111223333 3444444322 2569999998
Q ss_pred CCceEE-eeeCCC-----eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCC----c-cc
Q 004816 230 GQNIQV-LVSGSD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT----I-VE 298 (729)
Q Consensus 230 ~g~~~~-lt~~~~-----~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~----~-~~ 298 (729)
+|+..- ...... ....|... + ..++ ... ....++.+|+. +|+..+.......... . ..
T Consensus 164 tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~-~~~-------~~g~v~ald~~-tG~~~W~~~~~~~~g~~~~~~~~~ 232 (377)
T TIGR03300 164 TGERLWTYSRVTPALTLRGSASPVIA-D-GGVL-VGF-------AGGKLVALDLQ-TGQPLWEQRVALPKGRTELERLVD 232 (377)
T ss_pred CCceeeEEccCCCceeecCCCCCEEE-C-CEEE-EEC-------CCCEEEEEEcc-CCCEeeeeccccCCCCCchhhhhc
Confidence 887532 211111 11223332 3 3444 332 22458999988 7875443222111000 0 00
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeE
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 378 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~ 378 (729)
....|.. .++.+++.... ..|+.+|+++|+..--... .. +. .... .++.+|+.+ ...
T Consensus 233 ~~~~p~~-~~~~vy~~~~~----g~l~a~d~~tG~~~W~~~~-~~-----~~----~p~~-----~~~~vyv~~---~~G 289 (377)
T TIGR03300 233 VDGDPVV-DGGQVYAVSYQ----GRVAALDLRSGRVLWKRDA-SS-----YQ----GPAV-----DDNRLYVTD---ADG 289 (377)
T ss_pred cCCccEE-ECCEEEEEEcC----CEEEEEECCCCcEEEeecc-CC-----cc----CceE-----eCCEEEEEC---CCC
Confidence 0122333 23435544433 3588899988865432211 01 11 1111 456777664 234
Q ss_pred EEEEEECCCCceE-eecc-CCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 379 YLGILDDFGHSLS-LLDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 379 ~ly~~d~~~g~~~-~lt~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.|+.+|.++|+.. .... ...........++.+++ .+. ...+|.+|.++|+.
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~-~~~---~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVV-GDF---EGYLHWLSREDGSF 342 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEEECCEEEE-EeC---CCEEEEEECCCCCE
Confidence 6888898888643 2211 11111222234554443 332 24799999888864
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.2 Score=48.91 Aligned_cols=225 Identities=13% Similarity=0.089 Sum_probs=112.5
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEecc-CCCCCCcceEEEEEEcCCCc-----eEE---
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALNGQN-----IQV--- 235 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~-~~~~~~~~~~l~~~dl~~g~-----~~~--- 235 (729)
.++.++.++. +..+.+...-.-+...+.+.+-||-.++|+.+.-+. .+...-....||.++-.-+. ...
T Consensus 40 NqVhll~~d~--e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 40 NQVHLLRLDS--EGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred ceeEEEEecC--ccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 5677777664 222222211001134567888899787777766543 22211123457776544332 111
Q ss_pred ee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC--CCcEE
Q 004816 236 LV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGELF 312 (729)
Q Consensus 236 lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp--DG~l~ 312 (729)
|. ..-+...-..|-|++.+|+-.. + ..|.+++++.+.+.....+..+.. ........-.||| ||.-+
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~--d-------n~i~l~~l~ess~~vaev~ss~s~-e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD--D-------NNIVLWSLDESSKIVAEVLSSESA-EMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec--c-------CceEEEEcccCcchheeecccccc-cccceecccccCCCCccceE
Confidence 11 1223456678999999998665 2 237777877333322112222211 0114566778999 77633
Q ss_pred EEEecCCCceEEEEEEcCCCeE-EEeeccC-ccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 313 FVTDRKNGFWNLHKWIESNNEV-LAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~-~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
.+... ..|+.+|..+-+. -.|.... ..+ .++.|-| +.+.++++..++|..+||-....+-.+
T Consensus 188 ~tt~d----~tl~~~D~RT~~~~~sI~dAHgq~v---------rdlDfNp---nkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 188 ATTSD----STLQFWDLRTMKKNNSIEDAHGQRV---------RDLDFNP---NKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred EEeCC----CcEEEEEccchhhhcchhhhhccee---------eeccCCC---CceEEEEEcCCCccEEEEeccCCCccc
Confidence 33322 3566677655321 1111100 001 1222322 666788888899999998554333334
Q ss_pred EeeccCCcceEEe--eeeCCEEEEEEeCC
Q 004816 391 SLLDIPFTDIDNI--TLGNDCLFVEGASG 417 (729)
Q Consensus 391 ~~lt~~~~~v~~~--~~~~~~~~~~~~~~ 417 (729)
+.|......+..+ -+.-+++++..+++
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCC
Confidence 4554444344444 22334555554443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.079 Score=52.18 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=88.1
Q ss_pred cccCCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcce
Q 004816 143 QEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT 221 (729)
Q Consensus 143 ~~~~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~ 221 (729)
|.-|..+.+++.+ .-+.+...+..+-+-.+.+| +-.+..-.. ...+++..|++||.+|+-.+.+ .
T Consensus 305 HtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGH----sSyvn~a~ft~dG~~iisaSsD---------g 370 (508)
T KOG0275|consen 305 HTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGH----SSYVNEATFTDDGHHIISASSD---------G 370 (508)
T ss_pred hccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCc----cccccceEEcCCCCeEEEecCC---------c
Confidence 5556777766644 22334444555555566652 222222222 3456888999999998876654 3
Q ss_pred EEEEEEcCCCceEEeee--CC-CeeeeeeeCCC-CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcc
Q 004816 222 EIVAIALNGQNIQVLVS--GS-DFYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 297 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt~--~~-~~~~~~~~SPD-G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~ 297 (729)
.+-+++..+++...-.. +. ...+..-.-|. -..+.+.. ....+|++++. |++ ++.+...... .
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--------rsntv~imn~q--GQv--VrsfsSGkRE-g 437 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--------RSNTVYIMNMQ--GQV--VRSFSSGKRE-G 437 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc--------CCCeEEEEecc--ceE--EeeeccCCcc-C
Confidence 57777887765422211 11 11122222221 22333333 23459999987 554 3333222211 0
Q ss_pred ccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 298 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 298 ~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
+..-....||.|. +|+...+ .-||.+...+|+...
T Consensus 438 GdFi~~~lSpkGewiYcigED----~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGED----GVLYCFSVLSGKLER 473 (508)
T ss_pred CceEEEEecCCCcEEEEEccC----cEEEEEEeecCceee
Confidence 3334567899999 6666544 468888877776543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.41 Score=50.53 Aligned_cols=122 Identities=13% Similarity=0.071 Sum_probs=78.0
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCc--ceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNS--TTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 271 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~--~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 271 (729)
-.+.|.+.|++|.+....+....+.+ .++||++++.....+....-.+....++|+|++++.+.++...+ ..
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p------a~ 299 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP------AS 299 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccc------cc
Confidence 45679999999988766554222222 37899999985555444332455667899999999998883332 23
Q ss_pred EEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCC
Q 004816 272 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 272 l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g 332 (729)
+-++|+. |.+ +-.++. ..-..+.|||.++ +++..-. +-+.++-.+|+.+.
T Consensus 300 ~s~~~lr--~Nl--~~~~Pe------~~rNT~~fsp~~r~il~agF~-nl~gni~i~~~~~r 350 (561)
T COG5354 300 VSVFDLR--GNL--RFYFPE------QKRNTIFFSPHERYILFAGFD-NLQGNIEIFDPAGR 350 (561)
T ss_pred eeecccc--cce--EEecCC------cccccccccCcccEEEEecCC-ccccceEEeccCCc
Confidence 6677776 333 222222 2224678999999 5554433 44566777887654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.074 Score=55.59 Aligned_cols=139 Identities=14% Similarity=0.045 Sum_probs=85.6
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
++.|.--.+|.|.+||+... ..++++.... ....-+.+|+||.+|..---+ ..|..+|+..+ ++
T Consensus 522 kvcFsccsdGnI~vwDLhnq-~~VrqfqGht----DGascIdis~dGtklWTGGlD---------ntvRcWDlreg--rq 585 (705)
T KOG0639|consen 522 KVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHT----DGASCIDISKDGTKLWTGGLD---------NTVRCWDLREG--RQ 585 (705)
T ss_pred ceeeeeccCCcEEEEEcccc-eeeecccCCC----CCceeEEecCCCceeecCCCc---------cceeehhhhhh--hh
Confidence 78898888999999999862 3456666552 233667799999986533211 35777888654 33
Q ss_pred eeeC--CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 236 LVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 236 lt~~--~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
+... ...+.+...+|.|.+|++-- .++.+++.... ..+ +-.+.-.+ .-+-.+.|++=|+.+.
T Consensus 586 lqqhdF~SQIfSLg~cP~~dWlavGM--------ens~vevlh~s-kp~---kyqlhlhe----ScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 586 LQQHDFSSQIFSLGYCPTGDWLAVGM--------ENSNVEVLHTS-KPE---KYQLHLHE----SCVLSLKFAYCGKWFV 649 (705)
T ss_pred hhhhhhhhhheecccCCCccceeeec--------ccCcEEEEecC-Ccc---ceeecccc----cEEEEEEecccCceee
Confidence 3321 12234567889999998543 34557887765 222 11222222 3345678899898555
Q ss_pred EEecCCCceEEEEE
Q 004816 314 VTDRKNGFWNLHKW 327 (729)
Q Consensus 314 ~~~~~~g~~~l~~~ 327 (729)
.... .+..+.|+.
T Consensus 650 StGk-DnlLnawrt 662 (705)
T KOG0639|consen 650 STGK-DNLLNAWRT 662 (705)
T ss_pred ecCc-hhhhhhccC
Confidence 5444 455566664
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.011 Score=59.21 Aligned_cols=144 Identities=9% Similarity=0.071 Sum_probs=88.5
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC-ceE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-NIQ 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g-~~~ 234 (729)
.|+-+...++.|+++|+..+ ...+.+.-. .+-+.++|+| .. ..|+..+. ..+||.+|.-.- .+.
T Consensus 201 sILas~~sDrsIvLyD~R~~-~Pl~KVi~~-----mRTN~IswnP-ea-fnF~~a~E-------D~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQA-SPLKKVILT-----MRTNTICWNP-EA-FNFVAANE-------DHNLYTYDMRNLSRPL 265 (433)
T ss_pred hheeeeccCCceEEEecccC-Cccceeeee-----ccccceecCc-cc-cceeeccc-------cccceehhhhhhcccc
Confidence 45555556778999999872 233444432 5668899999 33 35554433 267999887531 122
Q ss_pred EeeeCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 235 VLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 235 ~lt~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
.+-.+. .......|||-|+-++-.+.|. .|.++.+. .+..+.+--.... +.+..+.||-|.+.++
T Consensus 266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDk--------sIRIf~~~-~~~SRdiYhtkRM-----q~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDK--------SIRIFPVN-HGHSRDIYHTKRM-----QHVFCVKYSMDSKYII 331 (433)
T ss_pred hhhcccceeEEEeccCCCcchhccccccc--------eEEEeecC-CCcchhhhhHhhh-----heeeEEEEeccccEEE
Confidence 222222 2344678999999887666443 37777776 4543221111211 5667789999998666
Q ss_pred EEecCCCceEEEEEEc
Q 004816 314 VTDRKNGFWNLHKWIE 329 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~ 329 (729)
...+ .+.-+||+...
T Consensus 332 SGSd-d~nvRlWka~A 346 (433)
T KOG0268|consen 332 SGSD-DGNVRLWKAKA 346 (433)
T ss_pred ecCC-Ccceeeeecch
Confidence 6555 67888987654
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.011 Score=50.04 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=45.3
Q ss_pred CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 645 ~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
..|+|++.++.|+++|++.++++.+.|.. .+++..++.||+... ....-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 48999999999999999999999999874 389999999998653 111233444455555
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.18 E-value=2.7 Score=50.30 Aligned_cols=60 Identities=10% Similarity=0.062 Sum_probs=43.7
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE----EcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEE
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI----ALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIE 259 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~----dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~ 259 (729)
..+-.+.+-+|...++++... ++|..+ +.++.+...+..-.......+||||+..|+++.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~---------Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALAS---------GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CcEEEEEeccCCCcEEEEECC---------ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe
Confidence 455667778888877777653 468888 666666666655455567789999999999887
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.6 Score=44.23 Aligned_cols=220 Identities=14% Similarity=0.115 Sum_probs=115.4
Q ss_pred EEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEe
Q 004816 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVL 236 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~l 236 (729)
+.+-..+-.+.+||.++ - .+.+-..-+ ....+..+.|-|-|.+|+-...+ ..|..++.++|-. .++
T Consensus 165 l~tcSsDl~~~LWd~~~--~-~~c~ks~~g-h~h~vS~V~f~P~gd~ilS~srD---------~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 165 LATCSSDLSAKLWDFDT--F-FRCIKSLIG-HEHGVSSVFFLPLGDHILSCSRD---------NTIKAWECDTGYCVKTF 231 (406)
T ss_pred EEecCCccchhheeHHH--H-HHHHHHhcC-cccceeeEEEEecCCeeeecccc---------cceeEEecccceeEEec
Confidence 33333343467777764 2 222221111 13567888999999887654433 3588999999865 456
Q ss_pred eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC--------
Q 004816 237 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK-------- 308 (729)
Q Consensus 237 t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD-------- 308 (729)
.....++...+.+-||.-+|-.+. ...|.++-++ +++. ...+.+.+ ..+.-.+|.|+
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~--------dqtl~vW~~~-t~~~--k~~lR~hE----h~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSN--------DQTLRVWVVA-TKQC--KAELREHE----HPVECIAWAPESSYPSISE 296 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCC--------CceEEEEEec-cchh--hhhhhccc----cceEEEEecccccCcchhh
Confidence 666677788889999997775552 2335555555 4422 11222221 11122233332
Q ss_pred ------Cc-EEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 309 ------GE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 309 ------G~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
|. +.+...+ + ..|-.+|..+|... .|...+ .|.. +..|. .++.++++-.+++.-++
T Consensus 297 at~~~~~~~~l~s~Sr-D--ktIk~wdv~tg~cL~tL~ghd------nwVr---~~af~----p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSR-D--KTIKIWDVSTGMCLFTLVGHD------NWVR---GVAFS----PGGKYILSCADDKTLRV 360 (406)
T ss_pred ccCCCCCccEEEeecc-c--ceEEEEeccCCeEEEEEeccc------ceee---eeEEc----CCCeEEEEEecCCcEEE
Confidence 22 3333322 2 23555677777432 232333 3432 44555 45667777778888888
Q ss_pred EEEECCCCc-eEeeccCCcceEEeeeeCCEEEEEEeCCCCCceE
Q 004816 381 GILDDFGHS-LSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSV 423 (729)
Q Consensus 381 y~~d~~~g~-~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 423 (729)
|-+. .++ .+.+..+..-+..+..+...-++.+++-+.+..+
T Consensus 361 wdl~--~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 361 WDLK--NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred EEec--cceeeeccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 8654 333 3334333333444433444445555555544443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.28 Score=51.94 Aligned_cols=124 Identities=14% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC
Q 004816 162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD 241 (729)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~ 241 (729)
..+|.+.+++-.+ ...+.+... .......+|+|||.-|+-+.++ ..|-++...|--...|.....
T Consensus 82 s~DGkf~il~k~~--rVE~sv~AH----~~A~~~gRW~~dGtgLlt~GED---------G~iKiWSrsGMLRStl~Q~~~ 146 (737)
T KOG1524|consen 82 SNDGRFVILNKSA--RVERSISAH----AAAISSGRWSPDGAGLLTAGED---------GVIKIWSRSGMLRSTVVQNEE 146 (737)
T ss_pred cCCceEEEecccc--hhhhhhhhh----hhhhhhcccCCCCceeeeecCC---------ceEEEEeccchHHHHHhhcCc
Confidence 3577788887653 333334433 2334667899999998777554 356666654422224444555
Q ss_pred eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEe
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~ 316 (729)
.....+|.||...|+|+.. .++++-++..+.+. ..-..+| +-+-...|++...|+....
T Consensus 147 ~v~c~~W~p~S~~vl~c~g---------~h~~IKpL~~n~k~---i~WkAHD----GiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG---------GHISIKPLAANSKI---IRWRAHD----GLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred eeEEEEECCCCCceEEecC---------CeEEEeecccccce---eEEeccC----cEEEEeecCccccceeecC
Confidence 5667899999999999973 45888888743332 2223444 5556778998877655543
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.023 Score=57.85 Aligned_cols=111 Identities=19% Similarity=0.147 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEe--cC--CCC-CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV--NY--GGS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG 566 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~--d~--rGs-~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 566 (729)
.-++|++||...+ ........+|...+.|+..+.+ -. +|+ .+|.-+ ..-..+...++..++.+|.+..
T Consensus 116 k~vlvFvHGfNnt-f~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~D------reS~~~Sr~aLe~~lr~La~~~ 188 (377)
T COG4782 116 KTVLVFVHGFNNT-FEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYD------RESTNYSRPALERLLRYLATDK 188 (377)
T ss_pred CeEEEEEcccCCc-hhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccc------hhhhhhhHHHHHHHHHHHHhCC
Confidence 4589999997332 2222333556666666543333 22 221 011111 1111234788999999999886
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh----C-----CCcceEEEEeccccChhHHh
Q 004816 567 KADEKRLCITGGSAGGYTTLAALA----F-----RDTFKAGASLYGVADLSMLR 611 (729)
Q Consensus 567 ~~d~~ri~i~G~S~GG~~a~~~~~----~-----~~~~~a~v~~~~~~d~~~~~ 611 (729)
. .++|.|++||||.++++.++. . +.+|+-+|+.+|=.|..-+.
T Consensus 189 ~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~DVF~ 240 (377)
T COG4782 189 P--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVDVFS 240 (377)
T ss_pred C--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChhhHH
Confidence 5 478999999999999987763 2 34578888888877765543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.77 Score=48.58 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=112.9
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee---CCCe
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS---GSDF 242 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~---~~~~ 242 (729)
++++||..+ |....--.....+.....-..||-|.++++.+.. +.|++.++ |+...+... ....
T Consensus 109 ~~~vwd~~s--g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~----------~sl~i~e~-t~n~~~~p~~~lr~~g 175 (561)
T COG5354 109 NVFVWDIAS--GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG----------SSLYIHEI-TDNIEEHPFKNLRPVG 175 (561)
T ss_pred ceeEEeccC--ceeEeeccccCCcccccceeeeeecchhhhhhcc----------CeEEEEec-CCccccCchhhccccc
Confidence 688998876 4321111110000001124578999988877743 56888887 544332211 1234
Q ss_pred eeeeeeCCC--CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCC
Q 004816 243 YAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 319 (729)
Q Consensus 243 ~~~~~~SPD--G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~ 319 (729)
...+.|||- +..|||..-...+. ...+.++.+..+..+....++.-.+ ..+.|.+.|+ |.+....+-
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~k---pa~~~i~sIp~~s~l~tk~lfk~~~-------~qLkW~~~g~~ll~l~~t~~ 245 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNK---PAMVRILSIPKNSVLVTKNLFKVSG-------VQLKWQVLGKYLLVLVMTHT 245 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCC---CcEEEEEEccCCCeeeeeeeEeecc-------cEEEEecCCceEEEEEEEee
Confidence 566889995 55577776443332 3345555555222333333443322 5688999999 776655421
Q ss_pred -------CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEe
Q 004816 320 -------GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL 392 (729)
Q Consensus 320 -------g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~ 392 (729)
|..+||+++......+........+-+..|.+ .++.+.+.+.. ....+-.+++.+. ++-
T Consensus 246 ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p------------~S~~F~vi~g~-~pa~~s~~~lr~N-l~~ 311 (561)
T COG5354 246 KSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEP------------LSSRFAVISGY-MPASVSVFDLRGN-LRF 311 (561)
T ss_pred ecccceeccceEEEEeecccccceeccccccceeeeecc------------cCCceeEEecc-cccceeecccccc-eEE
Confidence 23679998886554444333233444556665 44444444311 1122333444433 222
Q ss_pred eccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 393 LDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 393 lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
.-.....-..+..+..+++++++=++.-..+-.++..+
T Consensus 312 ~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 312 YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred ecCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 22111111222333445555555444445555555444
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.24 Score=47.71 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=57.8
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhh-CC--cEEEEecCCCCCCCchhHHHhhccC-CCcccHHH-HHHHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RG--WAFVDVNYGGSTGYGREFRERLLGR-WGIVDVND-CCSCATFLV 563 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G--~~v~~~d~rGs~g~g~~~~~~~~~~-~~~~~~~D-~~~~~~~l~ 563 (729)
....|.|+++.|.|+.. ..|..++..+-. .+ ..|..+-..|.-+-..+.++..... -.....+| +..=++++.
T Consensus 26 ~~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik 103 (301)
T KOG3975|consen 26 GEDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIK 103 (301)
T ss_pred CCCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHH
Confidence 45678999999987653 223333333322 12 3344444433222221111111111 01112233 334455555
Q ss_pred hCCCCCCCcEEEEEcChHHHHHHHHHh-C--CCcceEEEEecc
Q 004816 564 GSGKADEKRLCITGGSAGGYTTLAALA-F--RDTFKAGASLYG 603 (729)
Q Consensus 564 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~--~~~~~a~v~~~~ 603 (729)
+.- ....|+.|+|||-|+|+.++++. . .-.+..+++..|
T Consensus 104 ~~~-Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 104 EYV-PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred HhC-CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 543 23479999999999999999986 2 223555555554
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.34 Score=51.70 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=70.6
Q ss_pred ecceecCCCCEEEEEEeccCCCCC---CcceEEEEEEcCC--Cc---eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCC
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDAL---NSTTEIVAIALNG--QN---IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 265 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~---~~~~~l~~~dl~~--g~---~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~ 265 (729)
...+|+++|+-++..+.+.+.... .....|++++-.. |. .+.+..+.....++++.+|| |++..
T Consensus 17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~------ 88 (367)
T TIGR02604 17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT------ 88 (367)
T ss_pred ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC------
Confidence 556788888843222211111000 0113677776432 32 24445555556788999998 54432
Q ss_pred CCCCcEEEEE-EecCCCCee--eeEEecCCCCC---ccccccCceeCCCCcEEEEEecCC----------------CceE
Q 004816 266 PWDKAELWVG-YISENGDVY--KRVCVAGFDPT---IVESPTEPKWSSKGELFFVTDRKN----------------GFWN 323 (729)
Q Consensus 266 ~~~~~~l~~~-d~~~~g~~~--~~~~~~~~~~~---~~~~~~~~~wspDG~l~~~~~~~~----------------g~~~ 323 (729)
..+|+.+ |.+.++... ...+..+.... .......+.|.|||+||+...... ....
T Consensus 89 ---~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 89 ---PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred ---CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 2347766 443222221 12233332210 003456789999999877544200 0136
Q ss_pred EEEEEcCCCeEEEeec
Q 004816 324 LHKWIESNNEVLAIYS 339 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~ 339 (729)
++++++++++.+.+..
T Consensus 166 i~r~~pdg~~~e~~a~ 181 (367)
T TIGR02604 166 LFRYNPDGGKLRVVAH 181 (367)
T ss_pred EEEEecCCCeEEEEec
Confidence 9999999888776653
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.11 Score=65.68 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=60.6
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.++++||.++. ...|..+.+.+ ..++.|+.++.+|.+.. .. ....++++.+.+...+... ....+
T Consensus 1069 ~~l~~lh~~~g~--~~~~~~l~~~l-~~~~~v~~~~~~g~~~~-~~---------~~~~l~~la~~~~~~i~~~-~~~~p 1134 (1296)
T PRK10252 1069 PTLFCFHPASGF--AWQFSVLSRYL-DPQWSIYGIQSPRPDGP-MQ---------TATSLDEVCEAHLATLLEQ-QPHGP 1134 (1296)
T ss_pred CCeEEecCCCCc--hHHHHHHHHhc-CCCCcEEEEECCCCCCC-CC---------CCCCHHHHHHHHHHHHHhh-CCCCC
Confidence 568889997543 34566666665 44699999999865321 00 0112333333322222221 11357
Q ss_pred EEEEEcChHHHHHHHHHh----CCCcceEEEEecc
Q 004816 573 LCITGGSAGGYTTLAALA----FRDTFKAGASLYG 603 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~ 603 (729)
+.++|||+||.++..++. +++++..+++..+
T Consensus 1135 ~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1135 YHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred EEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 999999999999988876 5778888877664
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0098 Score=62.30 Aligned_cols=126 Identities=18% Similarity=0.217 Sum_probs=80.8
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh-hhHHHhhC-CcEEEEecCCCCCCCchhHH---Hhhcc
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFR---ERLLG 545 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~la~~-G~~v~~~d~rGs~g~g~~~~---~~~~~ 545 (729)
.+..-+|.|.. + ..+.-++|+++||+.-......+. -...|+.. ..+|+.+|||-+ .+|--+. ....+
T Consensus 120 CLYlNVW~P~~-~-----p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaPG 192 (601)
T KOG4389|consen 120 CLYLNVWAPAA-D-----PYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAPG 192 (601)
T ss_pred ceEEEEeccCC-C-----CCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeec-cceEEecCCCCCCCC
Confidence 45666677732 1 223348999999864443443332 23455554 578999999952 3443322 23345
Q ss_pred CCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHH-HHHh--CCCcceEEEEeccccC
Q 004816 546 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTL-AALA--FRDTFKAGASLYGVAD 606 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~-~~~~--~~~~~~a~v~~~~~~d 606 (729)
++| +-|..-|++|+.++ ..-|+++|.++|.|+|+..+. ++++ --..|+.+|+.+|..+
T Consensus 193 NmG---l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 193 NMG---LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred ccc---hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 555 78899999999886 345899999999999997653 4443 2337888887776543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.061 Score=56.16 Aligned_cols=133 Identities=11% Similarity=0.027 Sum_probs=86.4
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.|+++...++-+...+|.+-+||+.+ ..+..-... .....-.+++|||-...|+....-+ ..|+++|.
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g--~sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~D--------kki~~yD~ 238 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQG--MSPIFHASE--AHSAPCRGICFSPSNEALLVSVGYD--------KKINIYDI 238 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccC--CCcccchhh--hccCCcCcceecCCccceEEEeccc--------ceEEEeec
Confidence 35666667777777889999999986 332211111 0112237789999888776654322 46999998
Q ss_pred CCCce-EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 229 NGQNI-QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 229 ~~g~~-~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
.+.+. ..|+... ..+..+|+|+|.+|+--. .+.+|+.||+. +...++.....++ .++..++|-+
T Consensus 239 ~s~~s~~~l~y~~-Plstvaf~~~G~~L~aG~--------s~G~~i~YD~R--~~k~Pv~v~sah~----~sVt~vafq~ 303 (673)
T KOG4378|consen 239 RSQASTDRLTYSH-PLSTVAFSECGTYLCAGN--------SKGELIAYDMR--STKAPVAVRSAHD----ASVTRVAFQP 303 (673)
T ss_pred ccccccceeeecC-CcceeeecCCceEEEeec--------CCceEEEEecc--cCCCCceEeeecc----cceeEEEeee
Confidence 76543 3455432 345689999999887443 24569999997 3334566666666 6677777766
Q ss_pred C
Q 004816 308 K 308 (729)
Q Consensus 308 D 308 (729)
-
T Consensus 304 s 304 (673)
T KOG4378|consen 304 S 304 (673)
T ss_pred c
Confidence 4
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.038 Score=54.84 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=64.5
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHH-HHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ 571 (729)
|.|+++|+. ......|..+..++... .-|+.++.+|.++..... ...+|..+. ++.+.+. -...
T Consensus 1 ~pLF~fhp~--~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~~----------~~l~~~a~~yv~~Ir~~--QP~G 65 (257)
T COG3319 1 PPLFCFHPA--GGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQPF----------ASLDDMAAAYVAAIRRV--QPEG 65 (257)
T ss_pred CCEEEEcCC--CCcHHHHHHHHHHhccC-ceeeccccCccccccccc----------CCHHHHHHHHHHHHHHh--CCCC
Confidence 468999997 33456677777777776 889999998765422211 123443332 3333332 1245
Q ss_pred cEEEEEcChHHHHHHHHHh----CCCcceEEEEeccccC
Q 004816 572 RLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVAD 606 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~~~d 606 (729)
.+.+.|+|+||.+|.-++. ....+..++++..+..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 7999999999999988875 4556777777766554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.71 Score=44.86 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=69.9
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
.+....|||+++.+.+-+... --+|.+|-++.....++. ..+.-..-.||......|... .+.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~-------Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~--------Qdg 225 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRR-------VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF--------QDG 225 (344)
T ss_pred eeeeEEcCCCceEEEecCCCc-------ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe--------cCC
Confidence 467889999999888865431 224444444433333322 222222347887777666655 234
Q ss_pred EEEEEEecCCCCeee-eEEe-cCCCCCccccccCceeCCCCc--EEEEEecCCCceEEEEEEcCCCeEEEe
Q 004816 271 ELWVGYISENGDVYK-RVCV-AGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAI 337 (729)
Q Consensus 271 ~l~~~d~~~~g~~~~-~~~~-~~~~~~~~~~~~~~~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~~~~l 337 (729)
.+.++|+.-.+..-. .... +... +.+....||+-|- |+|.+. ++..+.++|..++.-.++
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hn----Ga~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHN----GAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCC----CceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeE
Confidence 578888762232210 1111 1122 5666778998775 777663 567788889888754433
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.9 Score=42.97 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=81.5
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCC--EEEEEEeccCCCCCCcceEEE
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~--~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+.+.++++-. +.+...+..|.+||+... .+...|... ....+...|.|+-. +|+-.+++ ++|.
T Consensus 46 itavAVs~~~-~aSGssDetI~IYDm~k~-~qlg~ll~H----agsitaL~F~~~~S~shLlS~sdD---------G~i~ 110 (362)
T KOG0294|consen 46 ITALAVSGPY-VASGSSDETIHIYDMRKR-KQLGILLSH----AGSITALKFYPPLSKSHLLSGSDD---------GHII 110 (362)
T ss_pred eeEEEeccee-EeccCCCCcEEEEeccch-hhhcceecc----ccceEEEEecCCcchhheeeecCC---------CcEE
Confidence 4455554332 223334558999999752 233333333 35567777777764 55555443 4577
Q ss_pred EEEcCCC-ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 225 AIALNGQ-NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 225 ~~dl~~g-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
+++...= ....+-...+..++.+..|.|| ||..-.++ ..|..+++- .|+..-+..+... ...+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D-------~~lr~WNLV-~Gr~a~v~~L~~~-------at~v 174 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGD-------QVLRTWNLV-RGRVAFVLNLKNK-------ATLV 174 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCc-eEEEEcCC-------ceeeeehhh-cCccceeeccCCc-------ceee
Confidence 7776431 1122333445578889999998 66544222 236777776 5654333333322 2458
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEE
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d 328 (729)
.|+|.|.-+++.-+ ..-.||..+
T Consensus 175 ~w~~~Gd~F~v~~~--~~i~i~q~d 197 (362)
T KOG0294|consen 175 SWSPQGDHFVVSGR--NKIDIYQLD 197 (362)
T ss_pred EEcCCCCEEEEEec--cEEEEEecc
Confidence 99999983333332 234455444
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.29 Score=47.02 Aligned_cols=178 Identities=10% Similarity=0.034 Sum_probs=98.9
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe---eeCC
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL---VSGS 240 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l---t~~~ 240 (729)
.|+|++.++..+ +..+.+..- +. .....+.+||+.-..+++++..+ ..|-++|+. .....| -+..
T Consensus 37 ~G~L~ile~~~~-~gi~e~~s~-d~-~D~LfdV~Wse~~e~~~~~a~GD--------GSLrl~d~~-~~s~Pi~~~kEH~ 104 (311)
T KOG0277|consen 37 NGRLFILEVTDP-KGIQECQSY-DT-EDGLFDVAWSENHENQVIAASGD--------GSLRLFDLT-MPSKPIHKFKEHK 104 (311)
T ss_pred CceEEEEecCCC-CCeEEEEee-ec-ccceeEeeecCCCcceEEEEecC--------ceEEEeccC-CCCcchhHHHhhh
Confidence 468888888531 222222111 11 23467899999888777776644 356666743 222222 2333
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCC
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 319 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~ 319 (729)
....+..|++--+++..++. |+ ..|-+++.. -+. .+..+.+.. .-+....|+|--. ++..... .
T Consensus 105 ~EV~Svdwn~~~r~~~ltsS------WD-~TiKLW~~~-r~~--Sv~Tf~gh~----~~Iy~a~~sp~~~nlfas~Sg-d 169 (311)
T KOG0277|consen 105 REVYSVDWNTVRRRIFLTSS------WD-GTIKLWDPN-RPN--SVQTFNGHN----SCIYQAAFSPHIPNLFASASG-D 169 (311)
T ss_pred hheEEeccccccceeEEeec------cC-CceEeecCC-CCc--ceEeecCCc----cEEEEEecCCCCCCeEEEccC-C
Confidence 44566789996666665551 22 124444433 122 255566665 5567788999655 5544433 5
Q ss_pred CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEE
Q 004816 320 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 381 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly 381 (729)
+..+||-++.. |+...+.-...+...-.|.. -+..++++..-++-.+.|
T Consensus 170 ~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~k------------y~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 170 GTLRLWDVRSP-GKFMSIEAHNSEILCCDWSK------------YNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEEEEEecCC-CceeEEEeccceeEeecccc------------cCCcEEEecCCCceEEEE
Confidence 77788876655 44444543334444456653 445577776655554444
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.34 Score=49.11 Aligned_cols=140 Identities=7% Similarity=0.033 Sum_probs=81.9
Q ss_pred eEEEEEEcCCCce-EEeee---CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 221 TEIVAIALNGQNI-QVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 221 ~~l~~~dl~~g~~-~~lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
.+||++|+..-+. ..|.. ..........++.+.+|||=+.. +..+|+++|+. += +....+..++
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~------t~GdV~l~d~~-nl--~~v~~I~aH~--- 173 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST------TSGDVVLFDTI-NL--QPVNTINAHK--- 173 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC------CCceEEEEEcc-cc--eeeeEEEecC---
Confidence 3599999976432 22211 22223344555666799987533 34679999976 33 3455666666
Q ss_pred cccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCe-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC
Q 004816 297 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 375 (729)
Q Consensus 297 ~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~ 375 (729)
..+..+++++||.++.++.. .| .-|-++...+|+ ..+.-.+. .-....++.|.+ +. .++..+...
T Consensus 174 -~~lAalafs~~G~llATASe-KG-TVIRVf~v~~G~kl~eFRRG~-------~~~~IySL~Fs~---ds-~~L~~sS~T 239 (391)
T KOG2110|consen 174 -GPLAALAFSPDGTLLATASE-KG-TVIRVFSVPEGQKLYEFRRGT-------YPVSIYSLSFSP---DS-QFLAASSNT 239 (391)
T ss_pred -CceeEEEECCCCCEEEEecc-Cc-eEEEEEEcCCccEeeeeeCCc-------eeeEEEEEEECC---CC-CeEEEecCC
Confidence 67788999999995555554 34 334444444443 33332221 112334566663 44 456666668
Q ss_pred CeEEEEEEECC
Q 004816 376 GRSYLGILDDF 386 (729)
Q Consensus 376 g~~~ly~~d~~ 386 (729)
+..||+.++..
T Consensus 240 eTVHiFKL~~~ 250 (391)
T KOG2110|consen 240 ETVHIFKLEKV 250 (391)
T ss_pred CeEEEEEeccc
Confidence 88999988754
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.087 Score=42.75 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=51.3
Q ss_pred cceecCCCCEEEEEEeccCCC---------CCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCC
Q 004816 195 DGIFDPRFNRYVTVREDRRQD---------ALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 265 (729)
Q Consensus 195 ~~~~SPdG~~l~~~~~~~~~~---------~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~ 265 (729)
++.+++++..|+|+....... .......|+.+|+.+++.+.|..+-.+.++.+.|||++.|++....
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~---- 77 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG---- 77 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG----
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc----
Confidence 456788866677775432211 1123578999999999999999888899999999999999988743
Q ss_pred CCCCcEEEEEEec
Q 004816 266 PWDKAELWVGYIS 278 (729)
Q Consensus 266 ~~~~~~l~~~d~~ 278 (729)
..+|..+-++
T Consensus 78 ---~~Ri~rywl~ 87 (89)
T PF03088_consen 78 ---RYRILRYWLK 87 (89)
T ss_dssp ---GTEEEEEESS
T ss_pred ---CceEEEEEEe
Confidence 3446666554
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.047 Score=59.11 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=80.1
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-h---h-----------------hhHHHhh
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-N---L-----------------SIQYWTS 519 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~---~-----------------~~~~la~ 519 (729)
+.+... .+..+..|+++..+ ..+..|+|+++-|||++...... . + .-..|.+
T Consensus 44 ~~v~~~-~~~~lf~~f~es~~------~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~ 116 (437)
T PLN02209 44 IGIGEE-ENVQFFYYFIKSDK------NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK 116 (437)
T ss_pred EEecCC-CCeEEEEEEEecCC------CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh
Confidence 444333 46778888887543 23557999999999976533211 0 0 0011222
Q ss_pred CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHH-HHhCCCCCCCcEEEEEcChHHHHHHHHHh----CC--
Q 004816 520 RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF-LVGSGKADEKRLCITGGSAGGYTTLAALA----FR-- 592 (729)
Q Consensus 520 ~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~-l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~~-- 592 (729)
=.+++.+|.+-+.|+...-....... ...+.+|+..+++. +...+.....++.|+|.|+||..+-.++. ..
T Consensus 117 -~anllfiDqPvGtGfSy~~~~~~~~~-~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~ 194 (437)
T PLN02209 117 -TANIIFLDQPVGSGFSYSKTPIERTS-DTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYI 194 (437)
T ss_pred -cCcEEEecCCCCCCccCCCCCCCccC-CHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccc
Confidence 25788999776666653211111100 11234666666553 33344445568999999999986655543 21
Q ss_pred -----CcceEEEEeccccCh
Q 004816 593 -----DTFKAGASLYGVADL 607 (729)
Q Consensus 593 -----~~~~a~v~~~~~~d~ 607 (729)
-.++++++.+|++|.
T Consensus 195 ~~~~~inl~Gi~igng~td~ 214 (437)
T PLN02209 195 CCNPPINLQGYVLGNPITHI 214 (437)
T ss_pred ccCCceeeeeEEecCcccCh
Confidence 257899999888764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.3 Score=45.09 Aligned_cols=131 Identities=10% Similarity=0.048 Sum_probs=78.8
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCC
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g 320 (729)
+......|++ -..++-.+||+ .|.++|+. +|.. ...+... ..+..+..+|..+|+.....
T Consensus 261 ~~Vs~V~w~d-~~v~yS~SwDH--------TIk~WDle-tg~~--~~~~~~~-----ksl~~i~~~~~~~Ll~~gss--- 320 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSWDH--------TIKVWDLE-TGGL--KSTLTTN-----KSLNCISYSPLSKLLASGSS--- 320 (423)
T ss_pred cceeeEEEcC-CCceEeecccc--------eEEEEEee-cccc--eeeeecC-----cceeEeecccccceeeecCC---
Confidence 4566788987 44455566655 38889998 5654 2222222 34556778887774444322
Q ss_pred ceEEEEEEcCCCeE----EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 321 FWNLHKWIESNNEV----LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 321 ~~~l~~~d~~~g~~----~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
..+|.++||.++.- ..+......+....|.| .+...+++...|+...||-+....+.+-.|...
T Consensus 321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp------------~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP------------TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred CCceeecCCCCCCCceeEEeeecchhhhhheecCC------------CCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 35677889987642 23334555666777776 555667777788888888665444444455555
Q ss_pred CcceEEe
Q 004816 397 FTDIDNI 403 (729)
Q Consensus 397 ~~~v~~~ 403 (729)
+.-+-++
T Consensus 389 ~DKvl~v 395 (423)
T KOG0313|consen 389 NDKVLSV 395 (423)
T ss_pred CceEEEE
Confidence 4444444
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.64 E-value=1 Score=49.35 Aligned_cols=69 Identities=13% Similarity=0.001 Sum_probs=47.6
Q ss_pred CCCEEEEEEEECCe--EEEEEEECC-CCceEeeccCCcceEE-eeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 364 EKNLIACSYRQNGR--SYLGILDDF-GHSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 364 ~~~~l~~~s~~~g~--~~ly~~d~~-~g~~~~lt~~~~~v~~-~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
..+.+||...+++. .|||++... .|+..+||.+...... ++.+-+.++...++...|..+..+.+..++
T Consensus 514 ~~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~ 586 (867)
T KOG2281|consen 514 VRKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPE 586 (867)
T ss_pred cceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCc
Confidence 34568898888774 789999988 8999999976543322 333334467777778888876666555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.2 Score=46.66 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=39.0
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYV 206 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~ 206 (729)
-+|.|+|..++... +.+|+++|...| +....|... ...+.-.+||.||++.+
T Consensus 18 ~afkPDGsqL~lAA--g~rlliyD~ndG-~llqtLKgH----KDtVycVAys~dGkrFA 69 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAA--GSRLLVYDTSDG-TLLQPLKGH----KDTVYCVAYAKDGKRFA 69 (1081)
T ss_pred eEECCCCceEEEec--CCEEEEEeCCCc-ccccccccc----cceEEEEEEccCCceec
Confidence 45778888887774 557999999874 556666665 46678889999999754
|
|
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.22 Score=48.22 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=34.1
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+.++.+++|..+|......+.+... .+++...+ .||.-..--....+-++|.+-|++
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WP----g~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R 365 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWP----GCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDR 365 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCC----CCEEEEee-cCceeeeehhchHHHHHHHHHHHh
Confidence 5677899999999866666666665 33555554 689632222223444455555544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.5 Score=42.26 Aligned_cols=111 Identities=16% Similarity=0.095 Sum_probs=75.1
Q ss_pred CCceEEEE--CCEEEEEECCCCcEEEEeCCCCCCCC---eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcc
Q 004816 146 GGGAFRIF--GDTVIFSNYKDQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST 220 (729)
Q Consensus 146 ~~~~~~~~--~~~i~~~~~~~~~l~~~d~~~~~~~~---~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~ 220 (729)
|-.++.+. ...|+|.....|+|-+.|+.. .+. ..+..+ .....-.+++-+|..|+-.+...
T Consensus 138 GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~--~~~~~p~~I~AH----~s~Iacv~Ln~~Gt~vATaStkG-------- 203 (346)
T KOG2111|consen 138 GLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS--TKPNAPSIINAH----DSDIACVALNLQGTLVATASTKG-------- 203 (346)
T ss_pred ceEeecCCCCceEEEcCCCccceEEEEEhhh--cCcCCceEEEcc----cCceeEEEEcCCccEEEEeccCc--------
Confidence 34445443 226788888889999999975 333 334433 24456778999999876665543
Q ss_pred eEEEEEEcCCCceE-EeeeCCC--eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec
Q 004816 221 TEIVAIALNGQNIQ-VLVSGSD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 278 (729)
Q Consensus 221 ~~l~~~dl~~g~~~-~lt~~~~--~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~ 278 (729)
.-|.++|..+|+.. .+-.|.+ .....+||||+++||..+ +...|+++.+.
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS--------dKgTlHiF~l~ 256 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS--------DKGTLHIFSLR 256 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc--------CCCeEEEEEee
Confidence 45667798887653 3444433 345679999999999887 44569998887
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.088 Score=57.00 Aligned_cols=131 Identities=16% Similarity=0.181 Sum_probs=76.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-h---h-----------------hhHHHhhCCcEEEE
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-N---L-----------------SIQYWTSRGWAFVD 526 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~---~-----------------~~~~la~~G~~v~~ 526 (729)
.+..+..|+++..+ ..+..|+|+++-|||++...... . + .-..|.+ -.+++.
T Consensus 48 ~~~~lfy~f~es~~------~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~anllf 120 (433)
T PLN03016 48 ENVQFFYYFIKSEN------NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK-MANIIF 120 (433)
T ss_pred CCeEEEEEEEecCC------CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh-cCcEEE
Confidence 46778888887644 23567999999999985432110 0 0 0011222 267899
Q ss_pred ecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHH-HHHhCCCCCCCcEEEEEcChHHHHHHHHHh----CC-------C
Q 004816 527 VNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA----FR-------D 593 (729)
Q Consensus 527 ~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~~-------~ 593 (729)
+|.+-+.|+...- ........ .+++|+..++. |+...+.....++.|.|.|+||..+-.++. .. -
T Consensus 121 iDqPvGtGfSy~~--~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~i 198 (433)
T PLN03016 121 LDQPVGSGFSYSK--TPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPI 198 (433)
T ss_pred ecCCCCCCccCCC--CCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcc
Confidence 9977666654321 11111111 12345655555 444444445678999999999986655543 11 2
Q ss_pred cceEEEEeccccCh
Q 004816 594 TFKAGASLYGVADL 607 (729)
Q Consensus 594 ~~~a~v~~~~~~d~ 607 (729)
.++++++.+|+.+.
T Consensus 199 nLkGi~iGNg~t~~ 212 (433)
T PLN03016 199 NLQGYMLGNPVTYM 212 (433)
T ss_pred cceeeEecCCCcCc
Confidence 57899999987654
|
|
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.53 Score=50.15 Aligned_cols=178 Identities=17% Similarity=0.084 Sum_probs=100.7
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEE-EEecCCCCCCC---chhHHHhhccCCCcccHHHHHHHHHHHHh
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAF-VDVNYGGSTGY---GREFRERLLGRWGIVDVNDCCSCATFLVG 564 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v-~~~d~rGs~g~---g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 564 (729)
+-|+|+.|++-|.-. ...|..+ -+|...|--. +.-|.|-.||. |.+-. -+.+..+|+..++
T Consensus 286 D~KPPL~VYFSGyR~---aEGFEgy-~MMk~Lg~PfLL~~DpRleGGaFYlGs~ey-----------E~~I~~~I~~~L~ 350 (511)
T TIGR03712 286 DFKPPLNVYFSGYRP---AEGFEGY-FMMKRLGAPFLLIGDPRLEGGAFYLGSDEY-----------EQGIINVIQEKLD 350 (511)
T ss_pred CCCCCeEEeeccCcc---cCcchhH-HHHHhcCCCeEEeeccccccceeeeCcHHH-----------HHHHHHHHHHHHH
Confidence 456899999988622 3334321 2334456554 45588866651 22211 1335555565555
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChhHHhhhcchhhhh----hhhhh---cC--------
Q 004816 565 SGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESR----YIDNL---VG-------- 627 (729)
Q Consensus 565 ~~~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~----~~~~~---~~-------- 627 (729)
.-..+.+.+.+.|.|||.+-|+.+++ .| .|+|..-|++++-.++......... .++-+ .+
T Consensus 351 ~LgF~~~qLILSGlSMGTfgAlYYga~l~P---~AIiVgKPL~NLGtiA~n~rL~RP~~F~TslDvl~~~~g~~s~~~i~ 427 (511)
T TIGR03712 351 YLGFDHDQLILSGLSMGTFGALYYGAKLSP---HAIIVGKPLVNLGTIASRMRLDRPDEFGTALDILLLNTGGTSSEDVV 427 (511)
T ss_pred HhCCCHHHeeeccccccchhhhhhcccCCC---ceEEEcCcccchhhhhccccccCCCCCchHHHhHHhhcCCCCHHHHH
Confidence 55678899999999999999999998 44 6888999999987776543221100 00100 01
Q ss_pred --ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 628 --SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 628 --~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
+...|... ...+--++..-+..=.+|.. ....-.++.+.|...++++--.-+|| .|+
T Consensus 428 ~ln~~fW~~f---~~~d~S~T~F~i~YM~~DDY-D~~A~~~L~~~l~~~~~~v~~kG~~G-RHN 486 (511)
T TIGR03712 428 KLDNRFWKKF---KKSDLSKTTFAIAYMKNDDY-DPTAFQDLLPYLSKQGAQVMSKGIPG-RHN 486 (511)
T ss_pred HHHHHHHHHH---hhcCcccceEEEEeeccccC-CHHHHHHHHHHHHhcCCEEEecCCCC-CCC
Confidence 11111111 11222235555555455543 44556678888887776655555554 464
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.075 Score=57.11 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=83.1
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-hh----hH----HHh------hCCcEEE
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LS----IQ----YWT------SRGWAFV 525 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~----~~----~la------~~G~~v~ 525 (729)
+.+... .+..+.+|+++..+ ..+..|+||++-|||+...-...- .. +. -|. .+=-+++
T Consensus 49 v~v~~~-~~~~LFYwf~eS~~------~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiL 121 (454)
T KOG1282|consen 49 VTVNES-EGRQLFYWFFESEN------NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANIL 121 (454)
T ss_pred EECCCC-CCceEEEEEEEccC------CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEE
Confidence 344444 68889999987654 134568999999999865332211 00 00 000 1124578
Q ss_pred EecCCCCCCCchhHHHhhccCCCcccHHHHHHH-HHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh----CC-------C
Q 004816 526 DVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FR-------D 593 (729)
Q Consensus 526 ~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~~-------~ 593 (729)
.+|-+-+.|+.-+-.......--.....|...+ .+|+.+.+......+.|.|.||+|...-.++. +. -
T Consensus 122 fLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~i 201 (454)
T KOG1282|consen 122 FLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNI 201 (454)
T ss_pred EEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcc
Confidence 888776555443221111110111225665554 45777777667789999999999976655542 21 2
Q ss_pred cceEEEEeccccCh
Q 004816 594 TFKAGASLYGVADL 607 (729)
Q Consensus 594 ~~~a~v~~~~~~d~ 607 (729)
.+++.++.+|++|.
T Consensus 202 NLkG~~IGNg~td~ 215 (454)
T KOG1282|consen 202 NLKGYAIGNGLTDP 215 (454)
T ss_pred cceEEEecCcccCc
Confidence 57999999988753
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.2 Score=47.57 Aligned_cols=187 Identities=8% Similarity=-0.058 Sum_probs=94.0
Q ss_pred EEEEEECC-CCcEEEEeCCCCCCCCeecCCCCCC---Cceee------------e--cceecCCCCEEEEEEeccCCCCC
Q 004816 156 TVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGE---PLVSY------------A--DGIFDPRFNRYVTVREDRRQDAL 217 (729)
Q Consensus 156 ~i~~~~~~-~~~l~~~d~~~~~~~~~~lt~~~~~---~~~~~------------~--~~~~SPdG~~l~~~~~~~~~~~~ 217 (729)
+-+|.++. .+++-+++++. -+..+|+..+.. .+.++ . ..=++|||+.+.-. .
T Consensus 142 r~~findk~n~Rvari~l~~--~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~--------~ 211 (635)
T PRK02888 142 RYLFINDKANTRVARIRLDV--MKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDP--------K 211 (635)
T ss_pred eEEEEecCCCcceEEEECcc--EeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecc--------c
Confidence 56677654 45888888876 444444432110 01111 1 11266777754211 1
Q ss_pred CcceEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 218 NSTTEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 218 ~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
.+.+.+-+||.++-++. ++.-+ +......++|||++++++..+.. ....+..++.. +.. ....+ +..
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE----~G~tl~em~a~-e~d--~~vvf-ni~--- 279 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSE----EGVTLAEMMAA-ERD--WVVVF-NIA--- 279 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcc----cCcceeeeccc-cCc--eEEEE-chH---
Confidence 23466778898876542 33222 23445689999998877663221 13345555543 211 11111 111
Q ss_pred cccccCceeCCCCcEEEEEecCCCceEEEEEEcCC----C-eEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEE
Q 004816 297 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN----N-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 371 (729)
Q Consensus 297 ~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~----g-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~ 371 (729)
.--.+.+||+..++. ...+-++|..+ + +.....+.. .-.| .+.+.| |++++|.+
T Consensus 280 ----~iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVG----KsPH-----GV~vSP---DGkylyVa 338 (635)
T PRK02888 280 ----RIEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVP----KNPH-----GVNTSP---DGKYFIAN 338 (635)
T ss_pred ----HHHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECC----CCcc-----ceEECC---CCCEEEEe
Confidence 012467899844432 24577888776 2 333322211 1111 233443 88888877
Q ss_pred EEECCeEEEEEEECCC
Q 004816 372 YRQNGRSYLGILDDFG 387 (729)
Q Consensus 372 s~~~g~~~ly~~d~~~ 387 (729)
...+....+ +|.+.
T Consensus 339 nklS~tVSV--IDv~k 352 (635)
T PRK02888 339 GKLSPTVTV--IDVRK 352 (635)
T ss_pred CCCCCcEEE--EEChh
Confidence 655554444 45544
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.68 Score=50.78 Aligned_cols=82 Identities=10% Similarity=0.011 Sum_probs=49.8
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE---eeeCCCe
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV---LVSGSDF 242 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~---lt~~~~~ 242 (729)
.|++|+..+- .+...|... ...+...+|||||++|+.++.+.. -.||-.--+-..... +......
T Consensus 553 vI~lw~t~~W-~~~~~L~~H----sLTVT~l~FSpdg~~LLsvsRDRt-------~sl~~~~~~~~~e~~fa~~k~HtRI 620 (764)
T KOG1063|consen 553 VIRLWNTANW-LQVQELEGH----SLTVTRLAFSPDGRYLLSVSRDRT-------VSLYEVQEDIKDEFRFACLKAHTRI 620 (764)
T ss_pred EEEEEeccch-hhhheeccc----ceEEEEEEECCCCcEEEEeecCce-------EEeeeeecccchhhhhccccccceE
Confidence 6888887652 233345555 578899999999999999877652 345544211111111 1112223
Q ss_pred eeeeeeCCCCCeEEEEE
Q 004816 243 YAFPRMDPRGERMAWIE 259 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~ 259 (729)
.-...|+||+++++-.+
T Consensus 621 IWdcsW~pde~~FaTaS 637 (764)
T KOG1063|consen 621 IWDCSWSPDEKYFATAS 637 (764)
T ss_pred EEEcccCcccceeEEec
Confidence 44678999999865444
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.73 Score=46.90 Aligned_cols=135 Identities=10% Similarity=0.019 Sum_probs=83.5
Q ss_pred CcEEEEeCCCCCCC----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--eEEeee
Q 004816 165 QRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--IQVLVS 238 (729)
Q Consensus 165 ~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--~~~lt~ 238 (729)
..|+++...+ |. .++++.. ...+.+..|||.-+.+++++.-+ ..|-++|+..+. ...++.
T Consensus 234 ~~I~lw~~~~--g~W~vd~~Pf~gH----~~SVEDLqWSptE~~vfaScS~D--------gsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 234 KGIHLWEPST--GSWKVDQRPFTGH----TKSVEDLQWSPTEDGVFASCSCD--------GSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred cceEeeeecc--CceeecCcccccc----ccchhhhccCCccCceEEeeecC--------ceEEEEEecCCCccceeEee
Confidence 3678877765 32 3344444 45678999999999888887655 467778887762 333333
Q ss_pred -CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe-eeeEEecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 239 -GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 239 -~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~-~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
.....+-..|+-+-..||+-. ++..+.++|+. .-+. .++..+.-+. ..+..+.|+|... .+..+
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~--------DdGt~~iwDLR-~~~~~~pVA~fk~Hk----~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGG--------DDGTLSIWDLR-QFKSGQPVATFKYHK----APITSIEWHPHEDSVIAAS 366 (440)
T ss_pred ccCCceeeEEccCCcceeeecC--------CCceEEEEEhh-hccCCCcceeEEecc----CCeeEEEeccccCceEEec
Confidence 233456679998877555433 33458888886 2211 2344555554 5678899999766 44444
Q ss_pred ecCCCceEEEEE
Q 004816 316 DRKNGFWNLHKW 327 (729)
Q Consensus 316 ~~~~g~~~l~~~ 327 (729)
.. ..+..||-+
T Consensus 367 g~-D~QitiWDl 377 (440)
T KOG0302|consen 367 GE-DNQITIWDL 377 (440)
T ss_pred cC-CCcEEEEEe
Confidence 33 345555533
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.78 Score=51.69 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=93.3
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCC----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.+.+++.+++.......||+-.+.++ +. .+.+... .++..|+|+++| +| ++.+..... ...|.+
T Consensus 370 vS~~g~~~A~v~~~~~~l~vg~~~~~-~~~~~~~~~~~~~-----~~Lt~PS~d~~g-~v-Wtvd~~~~~----~~vl~v 437 (599)
T PRK13613 370 VSRDESRAAGISADGDSVYVGSLTPG-ASIGVHSWGVTAD-----GRLTSPSWDGRG-DL-WVVDRDPAD----PRLLWL 437 (599)
T ss_pred EcCCCceEEEEcCCCcEEEEeccCCC-Cccccccceeecc-----CcccCCcCcCCC-CE-EEecCCCCC----ceEEEE
Confidence 44456677887655557888766441 33 2233322 457889999999 33 444332111 122444
Q ss_pred EEcCCCceEEeeeC---CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC--CCC--eeeeE-EecCCCCCcc
Q 004816 226 IALNGQNIQVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGD--VYKRV-CVAGFDPTIV 297 (729)
Q Consensus 226 ~dl~~g~~~~lt~~---~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~--~g~--~~~~~-~~~~~~~~~~ 297 (729)
+.- +|+...+... .......+.|+||-++|++.... ...+|++.-+.. +|. +...+ +..+.
T Consensus 438 ~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~-----g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----- 506 (599)
T PRK13613 438 LQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKD-----GRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----- 506 (599)
T ss_pred EcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecC-----CCcEEEEEEEEeCCCCcEEeeccEEeccCC-----
Confidence 443 5666544321 12577889999999999987432 235577666552 343 11111 11222
Q ss_pred ccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeE
Q 004816 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 298 ~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
..+..+.|..++.|+.+.....+...++++++++...
T Consensus 507 ~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 507 EDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred CccceeEEcCCCEEEEEeccCCCCcceEEEecCCcCc
Confidence 2356789999988776544324577899998876543
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.6 Score=48.73 Aligned_cols=161 Identities=16% Similarity=0.111 Sum_probs=91.2
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
.+.++..+++.......||+.... +..+.+... ..+..|+|+++| ++. +..+.. ...|.++..+
T Consensus 350 vS~~g~~~A~~~~~~~~l~~~~~g---~~~~~~~~g-----~~Lt~PS~d~~g-~vW-tv~~g~------~~~vv~~~~~ 413 (573)
T PRK13614 350 ESPVSQTVAFLNGSRTTLYTVSPG---QPARALTSG-----STLTRPSFSPQD-WVW-TAGPGG------NGRIVAYRPT 413 (573)
T ss_pred ecCCCceEEEecCCCcEEEEecCC---CcceeeecC-----CCccCCcccCCC-CEE-EeeCCC------CceEEEEecC
Confidence 444566777775544478877653 555554443 356889999999 444 433321 1356665543
Q ss_pred C-CceE-----Eeee---CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC--CCCeeeeEEecCCC--CCc
Q 004816 230 G-QNIQ-----VLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVYKRVCVAGFD--PTI 296 (729)
Q Consensus 230 ~-g~~~-----~lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~--~g~~~~~~~~~~~~--~~~ 296 (729)
+ ++.. .+.. ....+...+.|+||-+++.+.... ...+|++.-+.. +|.. ..+..... ..
T Consensus 414 g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~G~P--~~L~~~~~~~~~- 485 (573)
T PRK13614 414 GVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQN-----GKSRVQVAGIVRNEDGTP--RELTAPITLAAD- 485 (573)
T ss_pred CCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeC-----CccEEEEEEEEeCCCCCe--EEccCceecccC-
Confidence 2 2211 1111 112367889999999999987432 234577765552 3432 22221110 00
Q ss_pred cccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE
Q 004816 297 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 297 ~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
.......|..|+.|+.......+...++++.+..|..+
T Consensus 486 -~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~ 523 (573)
T PRK13614 486 -SDADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQPQ 523 (573)
T ss_pred -CCcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCCcc
Confidence 34567889999887766654245566777777555444
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.35 Score=54.04 Aligned_cols=148 Identities=13% Similarity=0.074 Sum_probs=83.5
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
|.|.+++-+++...++.+-+|++.. .++.--++. ..-+...+++|||+..+.-.-+ +..+.++..
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl----~~lITAvcy~PdGk~avIGt~~---------G~C~fY~t~ 481 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISD--KKVVDWNDL----RDLITAVCYSPDGKGAVIGTFN---------GYCRFYDTE 481 (712)
T ss_pred ecccCCCcEeecccccceEEeecCc--CeeEeehhh----hhhheeEEeccCCceEEEEEec---------cEEEEEEcc
Confidence 5555666555555678888888865 433332332 2345788999999975544332 234444555
Q ss_pred CCceEE---e--ee----CCCeeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 230 GQNIQV---L--VS----GSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 230 ~g~~~~---l--t~----~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
+-+..+ + .. -...++++.+.| +-..|.+++ +.++|.++|.. +..+ +..+.+..-. .+
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS--------nDSrIRI~d~~-~~~l--v~KfKG~~n~--~S 548 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS--------NDSRIRIYDGR-DKDL--VHKFKGFRNT--SS 548 (712)
T ss_pred CCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec--------CCCceEEEecc-chhh--hhhhcccccC--Cc
Confidence 433221 1 11 012567777765 333677777 34669999875 3333 3344443211 23
Q ss_pred ccCceeCCCCc-EEEEEecCCCceEEEEE
Q 004816 300 PTEPKWSSKGE-LFFVTDRKNGFWNLHKW 327 (729)
Q Consensus 300 ~~~~~wspDG~-l~~~~~~~~g~~~l~~~ 327 (729)
-....++.||+ |+..+++ .+-.||.+
T Consensus 549 Q~~Asfs~Dgk~IVs~seD--s~VYiW~~ 575 (712)
T KOG0283|consen 549 QISASFSSDGKHIVSASED--SWVYIWKN 575 (712)
T ss_pred ceeeeEccCCCEEEEeecC--ceEEEEeC
Confidence 34568999999 8777744 34444444
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.04 Score=53.80 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=44.8
Q ss_pred CCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhC-----CCcceEEEEecc
Q 004816 529 YGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-----RDTFKAGASLYG 603 (729)
Q Consensus 529 ~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~-----~~~~~a~v~~~~ 603 (729)
+||.-.....|.+.....+.. .......|++|+.+.-.-.+++|.+.|||.||.+|..++.. .+++..++...+
T Consensus 43 FRGTd~t~~~W~ed~~~~~~~-~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 43 FRGTDDTLVDWKEDFNMSFQD-ETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred EECCCCchhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 455433344455544332221 12333455566554321123569999999999999988862 457888888777
Q ss_pred c
Q 004816 604 V 604 (729)
Q Consensus 604 ~ 604 (729)
.
T Consensus 122 P 122 (224)
T PF11187_consen 122 P 122 (224)
T ss_pred C
Confidence 5
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.5 Score=48.76 Aligned_cols=230 Identities=12% Similarity=0.047 Sum_probs=126.3
Q ss_pred cccCCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceE
Q 004816 143 QEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~ 222 (729)
|......+.++.+.++..+...+.|-+|+.++. ...+.++.++ .-...|-|.++.|+.-..+ +.
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~-kciRTi~~~y------~l~~~Fvpgd~~Iv~G~k~---------Ge 435 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAGESIKIWNRDTL-KCIRTITCGY------ILASKFVPGDRYIVLGTKN---------GE 435 (888)
T ss_pred chhheeEEEeecCceeeeecCCCcEEEEEccCc-ceeEEecccc------EEEEEecCCCceEEEeccC---------Cc
Confidence 444566788888877777766778999998863 4566777541 2334688988877655442 45
Q ss_pred EEEEEcCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeee------EEecCCCCC
Q 004816 223 IVAIALNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR------VCVAGFDPT 295 (729)
Q Consensus 223 l~~~dl~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~------~~~~~~~~~ 295 (729)
|-++|+++...-... ...+.....+.+||++..+-.+-|..-.-|+. -++.+ . .|+...+ +.+.-.
T Consensus 436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf--~l~~~-~-~gt~~k~lsl~~~rtLel~--- 508 (888)
T KOG0306|consen 436 LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDF--KLVVS-V-PGTQKKVLSLKHTRTLELE--- 508 (888)
T ss_pred eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeE--EEEec-c-CcccceeeeeccceEEecc---
Confidence 777888876543322 23344556788999998876664432212211 11222 1 2332221 122111
Q ss_pred ccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEE
Q 004816 296 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 374 (729)
Q Consensus 296 ~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~ 374 (729)
..+..+..||||+++.++-- +..-.+|-+| +-+.. .|.... -|.-+ +... .+..++++...
T Consensus 509 --ddvL~v~~Spdgk~LaVsLL-dnTVkVyflD--tlKFflsLYGHk----LPV~s-----mDIS----~DSklivTgSA 570 (888)
T KOG0306|consen 509 --DDVLCVSVSPDGKLLAVSLL-DNTVKVYFLD--TLKFFLSLYGHK----LPVLS-----MDIS----PDSKLIVTGSA 570 (888)
T ss_pred --ccEEEEEEcCCCcEEEEEec-cCeEEEEEec--ceeeeeeecccc----cceeE-----Eecc----CCcCeEEeccC
Confidence 23456789999996556555 4556677665 32221 111111 12111 1111 33446667777
Q ss_pred CCeEEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEe
Q 004816 375 NGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGA 415 (729)
Q Consensus 375 ~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~ 415 (729)
|-...+|=+|. |. -+.+-...++|..+ ..+...++|.++
T Consensus 571 DKnVKiWGLdF--GDCHKS~fAHdDSvm~V~F~P~~~~FFt~g 611 (888)
T KOG0306|consen 571 DKNVKIWGLDF--GDCHKSFFAHDDSVMSVQFLPKTHLFFTCG 611 (888)
T ss_pred CCceEEecccc--chhhhhhhcccCceeEEEEcccceeEEEec
Confidence 77778886654 33 23444455667776 455444444444
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=3.2 Score=41.37 Aligned_cols=201 Identities=9% Similarity=-0.022 Sum_probs=97.1
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
-.|.++.+.++-+-+...+|.-++..| .-.+.++-.. -.......+.-+|++ +.+.+.. ..||.+.
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~G--dlirtiPL~g---~~DpE~Ieyig~n~f-vi~dER~--------~~l~~~~ 156 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEG--DLIRTIPLTG---FSDPETIEYIGGNQF-VIVDERD--------RALYLFT 156 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCC--ceEEEecccc---cCChhHeEEecCCEE-EEEehhc--------ceEEEEE
Confidence 345555556555555556888888875 5555544321 011233456666664 3333332 4566555
Q ss_pred cCCCc-eE-----Eee--e--C-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 228 LNGQN-IQ-----VLV--S--G-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 228 l~~g~-~~-----~lt--~--~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
++.+. .. .++ . . .....+.+|+|..+++.+..-..+ ..||.++-..+.-..........+.++
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P------~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP------IGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC------cEEEEEecCCcccccccccCcccccce
Confidence 44331 11 111 1 1 223467899999999988774333 347777643111100111111111111
Q ss_pred c-ccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee--ccCccccCCcccccCcceeeeeecCCCCEEEEEE
Q 004816 297 V-ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 372 (729)
Q Consensus 297 ~-~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s 372 (729)
. ..++...+.+... |++.++. ...|..+|.++.-...+. .+...... =.+....+... +.+.||..+
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~E---Sr~l~Evd~~G~~~~~lsL~~g~~gL~~--dipqaEGiamD----d~g~lYIvS 301 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDE---SRRLLEVDLSGEVIELLSLTKGNHGLSS--DIPQAEGIAMD----DDGNLYIVS 301 (316)
T ss_pred EeeccccceecCCCCcEEEEecC---CceEEEEecCCCeeeeEEeccCCCCCcc--cCCCcceeEEC----CCCCEEEEe
Confidence 0 2345566765544 7777765 245667777655333332 22211111 11122223332 667788888
Q ss_pred EECCe
Q 004816 373 RQNGR 377 (729)
Q Consensus 373 ~~~g~ 377 (729)
+.+..
T Consensus 302 EPnlf 306 (316)
T COG3204 302 EPNLF 306 (316)
T ss_pred cCCcc
Confidence 76543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=5.5 Score=42.38 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=52.6
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN 323 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~ 323 (729)
...|.|.| .||.-. ......++|.+ +... +.+-.+ . ..++-++++|||. |+..+.+ +.-.
T Consensus 412 ~~~fhpsg-~va~Gt--------~~G~w~V~d~e-~~~l--v~~~~d-~----~~ls~v~ysp~G~~lAvgs~d--~~iy 472 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGT--------ATGRWFVLDTE-TQDL--VTIHTD-N----EQLSVVRYSPDGAFLAVGSHD--NHIY 472 (626)
T ss_pred EeeccCcc-eEEEee--------ccceEEEEecc-ccee--EEEEec-C----CceEEEEEcCCCCEEEEecCC--CeEE
Confidence 35677887 565433 23447788877 4333 222222 2 4567789999999 6655554 7778
Q ss_pred EEEEEcCCCeEEEeeccC-ccccCCcccc
Q 004816 324 LHKWIESNNEVLAIYSLD-AEFSRPLWVF 351 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~~~-~~~~~~~w~~ 351 (729)
||+++.++.+..++-.-. .-+....|+.
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecC
Confidence 889888776665554211 2333456664
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.72 Score=47.46 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=64.5
Q ss_pred EEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 222 EIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
.|-.+|..++..++-.+..+..++...|+||..|.-.+.+ ..|-++|+. +.++ ..++....-.......
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD--------dtl~viDlR-t~eI--~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD--------DTLKVIDLR-TKEI--RQTFSAEGFKCASDWT 391 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCC--------Cceeeeecc-cccE--EEEeeccccccccccc
Confidence 3666776666666555666678889999999998755422 227778876 4443 2222211100002246
Q ss_pred CceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeecc
Q 004816 302 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL 340 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~ 340 (729)
.+.|||||+++..... ...||+++..+|+...+...
T Consensus 392 rvvfSpd~~YvaAGS~---dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSA---DGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred eeEECCCCceeeeccC---CCcEEEEEccCceEEEEecc
Confidence 7899999984433322 24688888889988776643
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.093 Score=52.80 Aligned_cols=153 Identities=10% Similarity=0.017 Sum_probs=88.9
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 271 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 271 (729)
....+++|--..|+.++..+ ..|+++|+-.+.+. .++-++ ..+..+|+| .- .-|+..++. ..
T Consensus 190 i~svkfNpvETsILas~~sD--------rsIvLyD~R~~~Pl~KVi~~m-RTN~IswnP-ea-fnF~~a~ED------~n 252 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASD--------RSIVLYDLRQASPLKKVILTM-RTNTICWNP-EA-FNFVAANED------HN 252 (433)
T ss_pred eeEEecCCCcchheeeeccC--------CceEEEecccCCccceeeeec-cccceecCc-cc-cceeecccc------cc
Confidence 34567888777777776433 46999999877653 333333 346789999 34 345553432 34
Q ss_pred EEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee--ccCccccCCc
Q 004816 272 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPL 348 (729)
Q Consensus 272 l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~ 348 (729)
||.+|.. .=. .+.....+.- ..+..+.|||-|+ ++-.+-+ ..-+|| ....+..+.+. .--..+....
T Consensus 253 lY~~DmR-~l~-~p~~v~~dhv----sAV~dVdfsptG~EfvsgsyD--ksIRIf--~~~~~~SRdiYhtkRMq~V~~Vk 322 (433)
T KOG0268|consen 253 LYTYDMR-NLS-RPLNVHKDHV----SAVMDVDFSPTGQEFVSGSYD--KSIRIF--PVNHGHSRDIYHTKRMQHVFCVK 322 (433)
T ss_pred ceehhhh-hhc-ccchhhcccc----eeEEEeccCCCcchhcccccc--ceEEEe--ecCCCcchhhhhHhhhheeeEEE
Confidence 9999876 211 2233334443 4556788999999 6544333 334455 44455544443 1111222345
Q ss_pred ccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 349 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 349 w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
|+. | ..++++..+++..+||.-..
T Consensus 323 ~S~------------D-skyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 323 YSM------------D-SKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred Eec------------c-ccEEEecCCCcceeeeecch
Confidence 553 4 44666777788889997654
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.3 Score=49.29 Aligned_cols=156 Identities=10% Similarity=0.031 Sum_probs=88.7
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
..+.++..+++... ++.|++.... +..+.+... ..+..|+|+++| ++..+.+.. ...+....
T Consensus 340 avS~dg~~~A~v~~-~~~l~vg~~~---~~~~~~~~~-----~~Lt~PS~d~~g-~vWtv~~g~-------~~~l~~~~- 401 (557)
T PRK13615 340 TLSADGRQAAVRNA-SGVWSVGDGD---RDAVLLDTR-----PGLVAPSLDAQG-YVWSTPASD-------PRGLVAWG- 401 (557)
T ss_pred eEcCCCceEEEEcC-CceEEEecCC---CcceeeccC-----CccccCcCcCCC-CEEEEeCCC-------ceEEEEec-
Confidence 34445667777754 4466666544 344554433 356889999999 444333222 12333333
Q ss_pred CCCceEEeee---CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE------ecCCCCCcccc
Q 004816 229 NGQNIQVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC------VAGFDPTIVES 299 (729)
Q Consensus 229 ~~g~~~~lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~------~~~~~~~~~~~ 299 (729)
.+|+...+.- ....+...+.|+||-+++.+.... ...+|++.-+..++. .+..+ +.... ..
T Consensus 402 ~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~-~P~~L~~~p~~l~~~l----~~ 471 (557)
T PRK13615 402 PDGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETG-----AGPQLLVASIVRDGG-VPTSLTTTPLELLASP----GT 471 (557)
T ss_pred CCCceEEeeccccCCCeeEEEEeCCCccEEEEEEecC-----CCCEEEEEEEEeCCC-cceEeeeccEEcccCc----Cc
Confidence 3355544432 224577889999999999987332 235677766553222 11222 11111 34
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCCC
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g 332 (729)
.....|..|++|+.+.....+..+++++.+.+.
T Consensus 472 v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 472 PLDATWVDELDVATLTLAPDGERQVELHQVGGP 504 (557)
T ss_pred ceeeEEcCCCEEEEEeccCCCCceEEEEECCCc
Confidence 567889999987777643234466777777654
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=5.7 Score=41.73 Aligned_cols=196 Identities=12% Similarity=0.063 Sum_probs=102.7
Q ss_pred CccCceEEcC-CC-cEEEEeecCCCCCceEEEEcCCCCCCCC--cccCCCCCcccccccccCCceEEEECCEEEEEECCC
Q 004816 89 KRLGGTAVDG-HG-RLIWLESRPTEAGRGVLVKEPAKAGDEP--SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~-~~~~~~~~~~~~~~~~l~~~~~~~~g~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (729)
.++..++|.| .. .+.-+- +..|+.-+|..+....-.. ..-++.... -++..|++.+..-+++...+
T Consensus 187 ~Rit~l~fHPt~~~~lva~G---dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~-------Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVG---DKGGQVGLWNFGTQEKDKDGVYLFTPHSGP-------VSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cceEEEEecccCcceEEEEc---cCCCcEEEEecCCCCCccCceEEeccCCcc-------ccceEecCCChhheeeeccC
Confidence 4556778888 43 333322 2467777787631100011 111111101 12344666666556677778
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC--ceEEeeeCCCe
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ--NIQVLVSGSDF 242 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g--~~~~lt~~~~~ 242 (729)
|.|-..|+.+ +..+.+-..+. ....+.+..++.+..-++|...- ..+-++|+.++ +...+.-....
T Consensus 257 GtiR~~D~~~--~i~e~v~s~~~-d~~~fs~~d~~~e~~~vl~~~~~---------G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 257 GTIRLQDFEG--NISEEVLSLDT-DNIWFSSLDFSAESRSVLFGDNV---------GNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred ceeeeeeecc--hhhHHHhhcCc-cceeeeeccccCCCccEEEeecc---------cceEEEEeecCCccchhhhhhhcc
Confidence 8899999987 44333332211 13556777788877777766432 23445555443 23333333336
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-CCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 317 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~ 317 (729)
..+..+.|--.++.-+...+ ..+.++|+.. .++..+..-..... ..+....|||+|- |+.+..+
T Consensus 325 I~sv~~NP~~p~~laT~s~D-------~T~kIWD~R~l~~K~sp~lst~~Hr----rsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLD-------QTAKIWDLRQLRGKASPFLSTLPHR----RSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred cceeecCCCCchheeecccC-------cceeeeehhhhcCCCCcceeccccc----ceeeeeEEcCCCCceEeeccC
Confidence 67788888776654444222 2255666641 12222212222333 6778889999987 7666554
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.38 Score=47.48 Aligned_cols=97 Identities=16% Similarity=0.268 Sum_probs=59.3
Q ss_pred CCCeeeeeeeCCCCC-eEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec
Q 004816 239 GSDFYAFPRMDPRGE-RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 317 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~-~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~ 317 (729)
..+..+..+|||.-. .|+-.+|| .++.+++++.+|..... .....+ ..+-..+|+.||..+|...-
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD--------~tVR~wevq~~g~~~~k-a~~~~~----~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWD--------GTVRIWEVQNSGQLVPK-AQQSHD----GPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred cccchheeEeccccCceEEecccC--------CceEEEEEecCCcccch-hhhccC----CCeEEEEEccCCceEEeecc
Confidence 345667789999433 33344443 23666777744554331 222222 44566799999997776655
Q ss_pred CCCceEEEEEEcCCCeEEEeeccCccccCCcccc
Q 004816 318 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 351 (729)
Q Consensus 318 ~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 351 (729)
.+... ++|+.+++..++-..++.+..-.|..
T Consensus 93 -Dk~~k--~wDL~S~Q~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 93 -DKQAK--LWDLASGQVSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred -CCceE--EEEccCCCeeeeeecccceeEEEEec
Confidence 45444 46899999888876665555556664
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.66 Score=47.85 Aligned_cols=162 Identities=10% Similarity=-0.024 Sum_probs=91.7
Q ss_pred CCCCcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEE
Q 004816 74 SWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI 152 (729)
Q Consensus 74 ~~~~~lt~e~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (729)
.|++-.|+-..-+-.+.+.++.+|| |+.+..+.. + ...+|..+.+ .....++|.+.+ +.+..+.|..
T Consensus 172 ~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d--~~~VW~~~~g--~~~a~~t~~~k~-----~~~~~cRF~~ 239 (398)
T KOG0771|consen 172 EWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D--SARVWSVNTG--AALARKTPFSKD-----EMFSSCRFSV 239 (398)
T ss_pred ecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C--ceEEEEeccC--chhhhcCCcccc-----hhhhhceecc
Confidence 3566556544444446789999999 888888764 2 3457876654 345556654322 2334455665
Q ss_pred ECC---EEEEEECC-CCcEEEEeCC--CCC--CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 153 FGD---TVIFSNYK-DQRLYKHSID--SKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 153 ~~~---~i~~~~~~-~~~l~~~d~~--~~~--~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
++. -.++.... .+.+-.+++. .++ ...++.... .........|+||++++.-..+ ..+-
T Consensus 240 d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~----~~siSsl~VS~dGkf~AlGT~d---------GsVa 306 (398)
T KOG0771|consen 240 DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR----FKSISSLAVSDDGKFLALGTMD---------GSVA 306 (398)
T ss_pred cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc----cCcceeEEEcCCCcEEEEeccC---------CcEE
Confidence 542 12222222 2233333321 100 123333332 1345778899999987655432 3466
Q ss_pred EEEcCCCceEEeee--CCCeeeeeeeCCCCCeEEEEEe
Q 004816 225 AIALNGQNIQVLVS--GSDFYAFPRMDPRGERMAWIEW 260 (729)
Q Consensus 225 ~~dl~~g~~~~lt~--~~~~~~~~~~SPDG~~la~~~~ 260 (729)
+++..+-+.-++.+ ...+.++..|+||.++++=++.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence 67765544444443 3347889999999999887663
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.1 Score=47.75 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=89.9
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 273 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~ 273 (729)
..++.|+||+.++++... ..|++-... +..+.+..+ .....|.|+++| +| |+..+.. ...+.
T Consensus 337 ~s~avS~dg~~~A~v~~~---------~~l~vg~~~-~~~~~~~~~-~~Lt~PS~d~~g-~v-Wtv~~g~-----~~~l~ 398 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS---------GVWSVGDGD-RDAVLLDTR-PGLVAPSLDAQG-YV-WSTPASD-----PRGLV 398 (557)
T ss_pred ccceEcCCCceEEEEcCC---------ceEEEecCC-CcceeeccC-CccccCcCcCCC-CE-EEEeCCC-----ceEEE
Confidence 567899999998888331 346655443 445555443 356789999999 55 4442221 12222
Q ss_pred EEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEE--EEEcCCCeEEEe-ec------cCcc
Q 004816 274 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIESNNEVLAI-YS------LDAE 343 (729)
Q Consensus 274 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~--~~d~~~g~~~~l-~~------~~~~ 343 (729)
. ...+|+...+. .....+ ..+..++.|+||- ++++... .+..+|+ .+--.++..+.| +. ....
T Consensus 399 ~--~~~~G~~~~v~--v~~~~~--~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~ 471 (557)
T PRK13615 399 A--WGPDGVGHPVA--VSWTAT--GRVVSLEVARDGARVLVQLET-GAGPQLLVASIVRDGGVPTSLTTTPLELLASPGT 471 (557)
T ss_pred E--ecCCCceEEee--ccccCC--CeeEEEEeCCCccEEEEEEec-CCCCEEEEEEEEeCCCcceEeeeccEEcccCcCc
Confidence 2 22245542221 111101 4577889999998 7777654 4444444 233345545555 31 1112
Q ss_pred ccCCcccccCcceeeeeecCCCCEEEEEE-EECCeEEEEEEECCCCceEeeccCCcc
Q 004816 344 FSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLSLLDIPFTD 399 (729)
Q Consensus 344 ~~~~~w~~~~~~~~~l~~~~~~~~l~~~s-~~~g~~~ly~~d~~~g~~~~lt~~~~~ 399 (729)
..+..|. ++..|++.. ...+...++++.+.+...+ +......
T Consensus 472 v~sl~W~-------------~~~~laVl~~~~~~~~~v~~v~v~g~~~~-~~~~~~~ 514 (557)
T PRK13615 472 PLDATWV-------------DELDVATLTLAPDGERQVELHQVGGPSKD-MGSAADG 514 (557)
T ss_pred ceeeEEc-------------CCCEEEEEeccCCCCceEEEEECCCcccc-cCCcCCc
Confidence 2333454 455565555 3455567888888755433 4444333
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.6 Score=44.58 Aligned_cols=127 Identities=11% Similarity=0.102 Sum_probs=71.4
Q ss_pred eeeecceecCCC----CEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC--------------------Ceeeee
Q 004816 191 VSYADGIFDPRF----NRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS--------------------DFYAFP 246 (729)
Q Consensus 191 ~~~~~~~~SPdG----~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~--------------------~~~~~~ 246 (729)
..+.++++.... +..+|+.+... ..|.++|+.+++.+++..+. +...+.
T Consensus 61 s~lndl~VD~~~~~~~~~~aYItD~~~-------~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gi 133 (287)
T PF03022_consen 61 SFLNDLVVDVRDGNCDDGFAYITDSGG-------PGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGI 133 (287)
T ss_dssp GGEEEEEEECTTTTS-SEEEEEEETTT-------CEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEE
T ss_pred cccceEEEEccCCCCcceEEEEeCCCc-------CcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCcccc
Confidence 445777766622 36789887653 47999999999888776421 112233
Q ss_pred ee---CCCCCeEEEEEecCCCCCCCCcEEEEEEec--CCCCeee-------eEEecCCCCCccccccCceeCCCCcEEEE
Q 004816 247 RM---DPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDVYK-------RVCVAGFDPTIVESPTEPKWSSKGELFFV 314 (729)
Q Consensus 247 ~~---SPDG~~la~~~~~~~~~~~~~~~l~~~d~~--~~g~~~~-------~~~~~~~~~~~~~~~~~~~wspDG~l~~~ 314 (729)
+. +|||++|+|... ....+|.++.+ .+..... ...+.... ........+++|.|||.
T Consensus 134 al~~~~~d~r~LYf~~l-------ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~----~~s~g~~~D~~G~ly~~ 202 (287)
T PF03022_consen 134 ALSPISPDGRWLYFHPL-------SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG----SQSDGMAIDPNGNLYFT 202 (287)
T ss_dssp EE-TTSTTS-EEEEEET-------T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-------SECEEEEETTTEEEEE
T ss_pred ccCCCCCCccEEEEEeC-------CCCcEEEEEHHHhhCccccccccccccceeccccC----CCCceEEECCCCcEEEe
Confidence 34 459999999873 23458887754 1222111 11111110 11234567777766665
Q ss_pred EecCCCceEEEEEEcCC----CeEEEee
Q 004816 315 TDRKNGFWNLHKWIESN----NEVLAIY 338 (729)
Q Consensus 315 ~~~~~g~~~l~~~d~~~----g~~~~l~ 338 (729)
-- ....|+++++.+ .+...|.
T Consensus 203 ~~---~~~aI~~w~~~~~~~~~~~~~l~ 227 (287)
T PF03022_consen 203 DV---EQNAIGCWDPDGPYTPENFEILA 227 (287)
T ss_dssp EC---CCTEEEEEETTTSB-GCCEEEEE
T ss_pred cC---CCCeEEEEeCCCCcCccchheeE
Confidence 43 346799999876 3444454
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.86 E-value=8.2 Score=42.97 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=33.1
Q ss_pred cEEEEEEecCCCCeeeeEEecCCCCCcc-ccccCceeC----CCCc---EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 270 AELWVGYISENGDVYKRVCVAGFDPTIV-ESPTEPKWS----SKGE---LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 270 ~~l~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ws----pDG~---l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
..|+.+|++ +|+..+.......+ .|. .....+... -||. +++.... + ..|+.+|+++|+..
T Consensus 256 ~~l~Ald~~-tG~~~W~~~~~~~~-~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~-~--G~l~ald~~tG~~~ 324 (488)
T cd00216 256 DSIVALDAD-TGKVKWFYQTTPHD-LWDYDGPNQPSLADIKPKDGKPVPAIVHAPK-N--GFFYVLDRTTGKLI 324 (488)
T ss_pred eeEEEEcCC-CCCEEEEeeCCCCC-CcccccCCCCeEEeccccCCCeeEEEEEECC-C--ceEEEEECCCCcEe
Confidence 479999998 89876654332221 110 011122222 2343 4555443 3 35899999998754
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=3.2 Score=39.71 Aligned_cols=82 Identities=7% Similarity=0.005 Sum_probs=51.0
Q ss_pred CCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-eeeCC
Q 004816 163 KDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVSGS 240 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~~~ 240 (729)
.+..|-+|++.. |.. +.-... +..+.|...+-|+.+++-.-.+ ..++++|.++|+.-+ +-...
T Consensus 37 sdrtvrLWNp~r--g~liktYsgh----G~EVlD~~~s~Dnskf~s~GgD---------k~v~vwDV~TGkv~Rr~rgH~ 101 (307)
T KOG0316|consen 37 SDRTVRLWNPLR--GALIKTYSGH----GHEVLDAALSSDNSKFASCGGD---------KAVQVWDVNTGKVDRRFRGHL 101 (307)
T ss_pred CCceEEeecccc--cceeeeecCC----CceeeeccccccccccccCCCC---------ceEEEEEcccCeeeeeccccc
Confidence 345677888765 332 222222 5677888888898875433222 468899999998644 43344
Q ss_pred CeeeeeeeCCCCCeEEEEE
Q 004816 241 DFYAFPRMDPRGERMAWIE 259 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~ 259 (729)
+..+..+|..+..-|+-.+
T Consensus 102 aqVNtV~fNeesSVv~Sgs 120 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGS 120 (307)
T ss_pred ceeeEEEecCcceEEEecc
Confidence 5567778887766544333
|
|
| >KOG2521 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.62 Score=48.23 Aligned_cols=226 Identities=13% Similarity=0.114 Sum_probs=128.8
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
...|+|+++... +............+.+.||.++.+-..-.. ..................+..|.+....|
T Consensus 37 s~k~Iv~~~gWa--g~~~r~l~ky~~~Yq~~g~~~~~~tap~~~-------~~~~~s~~~~sl~~~~~~l~~L~~~~~~~ 107 (350)
T KOG2521|consen 37 SEKPIVVLLGWA--GAIDRNLMKYSKIYQDKGYIVVRITAPCPS-------VFLSASRRILSLSLASTRLSELLSDYNSD 107 (350)
T ss_pred ccccEEEEeeec--cccchhHHHHHHHHhcCCceEEEecCcccc-------cccccccccchhhHHHHHHHHHhhhccCC
Confidence 334777777543 233334455677778899999877654211 01111122233455556666666665688
Q ss_pred CCcEEEEEcChHHHHHHHHH---h--C-CC---cceEEEEeccc------cChhHHhhhc--chhhhhhhhhh-------
Q 004816 570 EKRLCITGGSAGGYTTLAAL---A--F-RD---TFKAGASLYGV------ADLSMLRAET--HKFESRYIDNL------- 625 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~---~--~-~~---~~~a~v~~~~~------~d~~~~~~~~--~~~~~~~~~~~------- 625 (729)
+.++.+.=+|+||.+.+... . + |. .+.+.+..+.. .+........ ......+....
T Consensus 108 ~~pi~fh~FS~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~ 187 (350)
T KOG2521|consen 108 PCPIIFHVFSGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARSSPVQLGWAVSFSSPPDDYVARWARLNYHITLLT 187 (350)
T ss_pred cCceEEEEecCCceeehHHHHHHHhhcCchhHhhcCCceEeccccccchhhhcceeccccCchhhHHHHHhcCeEEEEEE
Confidence 99999999999997665443 2 2 21 22323322211 1111000000 00000000000
Q ss_pred -cCC---h----hhhhhcCcc----------cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCC
Q 004816 626 -VGS---E----KDYYEKSPI----------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687 (729)
Q Consensus 626 -~~~---~----~~~~~~sp~----------~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~g 687 (729)
... . ......+.. ........+.|.+.+..|.++|..+-+++.+..+..|..++..-+.+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~ 267 (350)
T KOG2521|consen 188 MAGNEGGAYLLGPLAEKISMSRKYHFLDRYEEQRNELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSE 267 (350)
T ss_pred eeecccchhhhhhhhhccccccchHHHHHHHhhhhcccccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCcc
Confidence 000 0 000000000 0011124577888899999999999999999999999999999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHhCCCCCCCCCCcee
Q 004816 688 HGFRKAENIKFTLEQQMVFFARVVGHFDVADEIIPIK 724 (729)
Q Consensus 688 H~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~ 724 (729)
|.-.-......+.+...+|++..............++
T Consensus 268 H~~h~r~~p~~y~~~~~~Fl~~~~~~~~~~~~~~~~~ 304 (350)
T KOG2521|consen 268 HVAHFRSFPKTYLKKCSEFLRSVISSYNLKNRILGIR 304 (350)
T ss_pred ceeeeccCcHHHHHHHHHHHHhcccccCCccCcccee
Confidence 9866666778999999999999987554443333333
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.21 Score=57.75 Aligned_cols=234 Identities=9% Similarity=0.008 Sum_probs=124.1
Q ss_pred EEEEECCCCcEEEEeCCC--CCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 157 VIFSNYKDQRLYKHSIDS--KDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~--~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
|+.-...+|.|-+|+.+. .+++...|.... .....+....|+|...-+.....++ ++|+++|+.. -..
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~--------geI~iWDlnn-~~t 151 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADD--------GEILIWDLNK-PET 151 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCC--------CcEEEeccCC-cCC
Confidence 555556778888888753 103333333221 1123455677999887566554443 6799999975 223
Q ss_pred EeeeC----CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 235 VLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 235 ~lt~~----~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
..+.+ .+.....+|.-.-++|.-.. .. ....-++|+.. .+ .+.-+...... ...+.+.|.||..
T Consensus 152 P~~~~~~~~~~eI~~lsWNrkvqhILAS~-s~------sg~~~iWDlr~-~~--pii~ls~~~~~--~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 152 PFTPGSQAPPSEIKCLSWNRKVSHILASG-SP------SGRAVIWDLRK-KK--PIIKLSDTPGR--MHCSVLAWHPDHA 219 (1049)
T ss_pred CCCCCCCCCcccceEeccchhhhHHhhcc-CC------CCCceeccccC-CC--cccccccCCCc--cceeeeeeCCCCc
Confidence 33332 12233445654444442221 11 22356667762 22 12222222111 2356789999986
Q ss_pred --EEEEEecCCCceEEEEEEcC--CCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 311 --LFFVTDRKNGFWNLHKWIES--NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 311 --l~~~~~~~~g~~~l~~~d~~--~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
++..+++ +..-.|-.+|+. +.-.+.++.....+-...|.+ .+.++++++.+|++ ++..+.+
T Consensus 220 Tql~~As~d-d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~------------~D~~lllSsgkD~~--ii~wN~~ 284 (1049)
T KOG0307|consen 220 TQLLVASGD-DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCP------------QDPRLLLSSGKDNR--IICWNPN 284 (1049)
T ss_pred eeeeeecCC-CCCceeEeecccccCCchhhhcccccceeeeccCC------------CCchhhhcccCCCC--eeEecCC
Confidence 5555555 444455556643 222334444455555677876 55567778777774 5555787
Q ss_pred CCceE-eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEE
Q 004816 387 GHSLS-LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 387 ~g~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
+|++- .+......+..+ +.+..--++..++-++.-+||-+.
T Consensus 285 tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 285 TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred CceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 87753 444433334444 444444455555566666666553
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.35 Score=49.74 Aligned_cols=92 Identities=14% Similarity=0.015 Sum_probs=52.2
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
.-+++++||..|+....+ ..|.+++..+ ..+..............|||||+.|++++.+ ..
T Consensus 148 k~vaf~~~gs~latgg~d---------g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d---------~~ 209 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD---------GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD---------SA 209 (398)
T ss_pred eEEEEcCCCCEeeecccc---------ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC---------ce
Confidence 345688888876655433 3455556222 1111111223445667899999999999843 25
Q ss_pred EEEEecCCCCeeeeEEe-cCCCCCccccccCceeCCCC
Q 004816 273 WVGYISENGDVYKRVCV-AGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 273 ~~~d~~~~g~~~~~~~~-~~~~~~~~~~~~~~~wspDG 309 (729)
.++++. +|.. ..+.. .+.+ ..+...+|+.|+
T Consensus 210 ~VW~~~-~g~~-~a~~t~~~k~----~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 210 RVWSVN-TGAA-LARKTPFSKD----EMFSSCRFSVDN 241 (398)
T ss_pred EEEEec-cCch-hhhcCCcccc----hhhhhceecccC
Confidence 667777 5632 11222 2222 556677888877
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.11 Score=52.73 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=79.0
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhC---C------cEEEEecCCCCC
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR---G------WAFVDVNYGGST 533 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~---G------~~v~~~d~rGs~ 533 (729)
+++...|..++.....|+... +.++.--++++||.|++. ..|...+..|..- | |.|++|-.+|
T Consensus 127 ykTeIeGL~iHFlhvk~p~~k----~~k~v~PlLl~HGwPGsv--~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG-- 198 (469)
T KOG2565|consen 127 YKTEIEGLKIHFLHVKPPQKK----KKKKVKPLLLLHGWPGSV--REFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG-- 198 (469)
T ss_pred hhhhhcceeEEEEEecCCccc----cCCcccceEEecCCCchH--HHHHhhhhhhcCccccCCccceeEEEeccCCCC--
Confidence 344447889998888876521 234433477789998764 3333344555443 3 7799999975
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecc
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYG 603 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~ 603 (729)
||.+ +... ..| .....+..++.-|.-+ +.-++..|-|.-+|..++..++. +|+.+.+.-+..+
T Consensus 199 -ygwS--d~~s-k~G-Fn~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm~ 262 (469)
T KOG2565|consen 199 -YGWS--DAPS-KTG-FNAAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNMC 262 (469)
T ss_pred -cccC--cCCc-cCC-ccHHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhhccc
Confidence 4432 1111 112 1234455555544444 23478999999999999999998 9998877655443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=2 Score=42.34 Aligned_cols=153 Identities=9% Similarity=0.008 Sum_probs=88.5
Q ss_pred ceEEEE--CCEEEEEECCCCcEEEEeCCCCCC----CCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcce
Q 004816 148 GAFRIF--GDTVIFSNYKDQRLYKHSIDSKDS----SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT 221 (729)
Q Consensus 148 ~~~~~~--~~~i~~~~~~~~~l~~~d~~~~~~----~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~ 221 (729)
.+|.|. +-.++-++.-+..--+||+.+ + ..+||-.. ...+.|.+|+.+|..++.+...+ +
T Consensus 154 TSFDWne~dp~~igtSSiDTTCTiWdie~--~~~~~vkTQLIAH----DKEV~DIaf~~~s~~~FASvgaD--------G 219 (364)
T KOG0290|consen 154 TSFDWNEVDPNLIGTSSIDTTCTIWDIET--GVSGTVKTQLIAH----DKEVYDIAFLKGSRDVFASVGAD--------G 219 (364)
T ss_pred cccccccCCcceeEeecccCeEEEEEEee--ccccceeeEEEec----CcceeEEEeccCccceEEEecCC--------C
Confidence 445553 224455555666667777776 4 13455544 35678999999998876665443 4
Q ss_pred EEEEEEcCCCceEEee-eCCC---eeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 222 EIVAIALNGQNIQVLV-SGSD---FYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt-~~~~---~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
.+.++|+...+-..+. +++. ..-..+|++ |=+++|-... +..+|.+.|+. ... ..+..+.++.
T Consensus 220 SvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~-------dS~~V~iLDiR-~P~-tpva~L~~H~--- 287 (364)
T KOG0290|consen 220 SVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM-------DSNKVVILDIR-VPC-TPVARLRNHQ--- 287 (364)
T ss_pred cEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhc-------CCceEEEEEec-CCC-cceehhhcCc---
Confidence 5777788765544443 3322 122335555 3344443332 34568888887 332 2344556665
Q ss_pred cccccCceeCCCCc-EEEEEecCCCceEEEEEEcC
Q 004816 297 VESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 297 ~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~ 330 (729)
..+..++|.|-.+ .+++..+ . .+...+|+.
T Consensus 288 -a~VNgIaWaPhS~~hictaGD-D--~qaliWDl~ 318 (364)
T KOG0290|consen 288 -ASVNGIAWAPHSSSHICTAGD-D--CQALIWDLQ 318 (364)
T ss_pred -ccccceEecCCCCceeeecCC-c--ceEEEEecc
Confidence 7788999999887 6666544 2 333344553
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.6 Score=43.58 Aligned_cols=186 Identities=10% Similarity=0.032 Sum_probs=96.0
Q ss_pred EEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee
Q 004816 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV 237 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt 237 (729)
+++...+|+|.+|+...- ....-+-.. ..++++.++.|-|+.-+.+..+ ..|-.+++-.|+.--+.
T Consensus 100 LlS~sdDG~i~iw~~~~W-~~~~slK~H----~~~Vt~lsiHPS~KLALsVg~D---------~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSW-ELLKSLKAH----KGQVTDLSIHPSGKLALSVGGD---------QVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eeeecCCCcEEEEEcCCe-EEeeeeccc----ccccceeEecCCCceEEEEcCC---------ceeeeehhhcCccceee
Confidence 445557888988887541 111222222 3458999999999954444333 35777788777655444
Q ss_pred eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec
Q 004816 238 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 317 (729)
Q Consensus 238 ~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~ 317 (729)
.-........|+|.|.+.+.... +..+||-.+.. .+ ...+... .......|...+.|+...++
T Consensus 166 ~L~~~at~v~w~~~Gd~F~v~~~-------~~i~i~q~d~A---~v--~~~i~~~-----~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 166 NLKNKATLVSWSPQGDHFVVSGR-------NKIDIYQLDNA---SV--FREIENP-----KRILCATFLDGSELLVGGDN 228 (362)
T ss_pred ccCCcceeeEEcCCCCEEEEEec-------cEEEEEecccH---hH--hhhhhcc-----ccceeeeecCCceEEEecCC
Confidence 43333445899999998776652 22334444322 21 1111111 11122334333324433322
Q ss_pred CCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 318 KNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 318 ~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
..+-..|-+++..- .++..+.. ..++.+... +...++.+...+|...+|-++.++++
T Consensus 229 ----~~i~~~D~ds~~~~~~~~AH~~R---------VK~i~~~~~--~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 229 ----EWISLKDTDSDTPLTEFLAHENR---------VKDIASYTN--PEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred ----ceEEEeccCCCccceeeecchhh---------eeeeEEEec--CCceEEEEeccCceEEEEEccccccC
Confidence 23444454442211 11111111 122232211 34467788888999999988887655
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.1 Score=41.32 Aligned_cols=155 Identities=9% Similarity=0.026 Sum_probs=92.0
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
..+....|.-..+.|+-..++ ..+.++|..+|.+.+-..-.....+...|+||+.|. ++ .++
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd---------~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilT-ia--------~gs 205 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADD---------KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILT-IA--------YGS 205 (334)
T ss_pred CcceeEEEeccCceEEeeccC---------CceEEEEeccCcEEEEEecCCCCcceeeccCCCEEE-Ee--------cCc
Confidence 334555666655555444332 357778998887765444444567788999999664 44 123
Q ss_pred EEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCccc
Q 004816 271 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWV 350 (729)
Q Consensus 271 ~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~ 350 (729)
.|--+|.. +=. ++...+.. ..+....-+|+..+++... ....+|++|-.+|+..... ..+.+ +|
T Consensus 206 sV~Fwdak-sf~-----~lKs~k~P--~nV~SASL~P~k~~fVaGg---ed~~~~kfDy~TgeEi~~~-nkgh~-gp--- 269 (334)
T KOG0278|consen 206 SVKFWDAK-SFG-----LLKSYKMP--CNVESASLHPKKEFFVAGG---EDFKVYKFDYNTGEEIGSY-NKGHF-GP--- 269 (334)
T ss_pred eeEEeccc-ccc-----ceeeccCc--cccccccccCCCceEEecC---cceEEEEEeccCCceeeec-ccCCC-Cc---
Confidence 35555655 211 11111100 3445667788865544433 2466899999999877663 11111 22
Q ss_pred ccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 351 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 351 ~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
...+.|. .++.+|.+..++|..+||....
T Consensus 270 --VhcVrFS----PdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 270 --VHCVRFS----PDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred --eEEEEEC----CCCceeeccCCCceEEEEEecC
Confidence 2345666 4567888888999999998765
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.47 E-value=8 Score=45.32 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=63.2
Q ss_pred CceeCCCCc--EEEEEecCCC-ceEEEEEEcCCC-eEEEeeccCccccC-CcccccCcceeeeeecCCCCEEEEEEEE--
Q 004816 302 EPKWSSKGE--LFFVTDRKNG-FWNLHKWIESNN-EVLAIYSLDAEFSR-PLWVFGINSYEIIQSHGEKNLIACSYRQ-- 374 (729)
Q Consensus 302 ~~~wspDG~--l~~~~~~~~g-~~~l~~~d~~~g-~~~~l~~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~l~~~s~~-- 374 (729)
.+.++.|+. +++.... .+ ..++..+....+ ..+.++.+..++.. ..|. . +.+.++|.+..
T Consensus 344 ~~~~~~d~~~~~~~~~~~-~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~---------~---~~~~i~f~~~~~~ 410 (755)
T KOG2100|consen 344 EPVFSSDGSSYLKVDSVS-DGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYD---------K---DSNRIYFDAYEED 410 (755)
T ss_pred cceEeecCCceeEEEeec-cCCEEEEEEEEcCCCCccccccccceEEEEecccc---------C---CCceEEEEecCCC
Confidence 467888875 3344444 44 677777766665 55555543322221 1111 1 66778888776
Q ss_pred CCeEEEEEEECCCCceEeeccCCc----ceEEe-ee-eCCEEEEEEeCCCCC
Q 004816 375 NGRSYLGILDDFGHSLSLLDIPFT----DIDNI-TL-GNDCLFVEGASGVEP 420 (729)
Q Consensus 375 ~g~~~ly~~d~~~g~~~~lt~~~~----~v~~~-~~-~~~~~~~~~~~~~~~ 420 (729)
.+..+||.+++.+....+++.... .+.++ .+ ....+++.+..+..|
T Consensus 411 ~~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p 462 (755)
T KOG2100|consen 411 PSERHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVP 462 (755)
T ss_pred CCceEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEEccCCCCC
Confidence 678999999999988888876543 23333 22 234555556666655
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=3.7 Score=46.43 Aligned_cols=240 Identities=7% Similarity=-0.079 Sum_probs=121.4
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAF 245 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~ 245 (729)
.++.+|+.+ ++-..++.-+. .+.......-+| .|+.+...... ......++++|+.++....+.+-...-..
T Consensus 273 ~v~~yd~~~--~~W~~l~~mp~---~r~~~~~a~l~~-~IYviGG~~~~--~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~ 344 (557)
T PHA02713 273 CILVYNINT--MEYSVISTIPN---HIINYASAIVDN-EIIIAGGYNFN--NPSLNKVYKINIENKIHVELPPMIKNRCR 344 (557)
T ss_pred CEEEEeCCC--CeEEECCCCCc---cccceEEEEECC-EEEEEcCCCCC--CCccceEEEEECCCCeEeeCCCCcchhhc
Confidence 578899887 66666665421 111111222344 45444321111 11235789999988776665432211111
Q ss_pred ee-eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCC-----
Q 004816 246 PR-MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN----- 319 (729)
Q Consensus 246 ~~-~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~----- 319 (729)
+. -.-+| +|+.+...... . ....+..+|.. +.+.. ..+..... .... ..-.-+|+||.......
T Consensus 345 ~~~~~~~g-~IYviGG~~~~-~-~~~sve~Ydp~-~~~W~---~~~~mp~~--r~~~-~~~~~~g~IYviGG~~~~~~~~ 414 (557)
T PHA02713 345 FSLAVIDD-TIYAIGGQNGT-N-VERTIECYTMG-DDKWK---MLPDMPIA--LSSY-GMCVLDQYIYIIGGRTEHIDYT 414 (557)
T ss_pred eeEEEECC-EEEEECCcCCC-C-CCceEEEEECC-CCeEE---ECCCCCcc--cccc-cEEEECCEEEEEeCCCcccccc
Confidence 21 22344 57666632211 1 13458888887 55432 22222100 1111 12234677766653311
Q ss_pred ---------------CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC----eEEE
Q 004816 320 ---------------GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG----RSYL 380 (729)
Q Consensus 320 ---------------g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g----~~~l 380 (729)
....+.++|+.+++++.+.+........ .... -++.||+....++ ...+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-------~~~~-----~~~~IYv~GG~~~~~~~~~~v 482 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-------GVVS-----HKDDIYVVCDIKDEKNVKTCI 482 (557)
T ss_pred cccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-------cEEE-----ECCEEEEEeCCCCCCccceeE
Confidence 1245889999999988776432111111 1122 2346776654322 1357
Q ss_pred EEEECCC-CceEeeccCCcce--EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 381 GILDDFG-HSLSLLDIPFTDI--DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 381 y~~d~~~-g~~~~lt~~~~~v--~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
.++|+++ .+++.+..-.... ..+..-+++++++++-.. ...+..+|+.+.+.+.+
T Consensus 483 e~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~-~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 483 FRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYES-YMLQDTFNVYTYEWNHI 540 (557)
T ss_pred EEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecc-eeehhhcCcccccccch
Confidence 8999998 7898776433221 222444677777766433 23466777777776433
|
|
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.25 Score=47.63 Aligned_cols=82 Identities=15% Similarity=0.008 Sum_probs=47.8
Q ss_pred cchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHH-HHHHHHhCCCCCCCcEEEEEcChHHHHHHH
Q 004816 509 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS-CATFLVGSGKADEKRLCITGGSAGGYTTLA 587 (729)
Q Consensus 509 ~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~ 587 (729)
.|......+.. .+.|+.++++|.+.. .. . ....+++.. .++.+... ....++.++|||+||.++..
T Consensus 14 ~~~~~~~~l~~-~~~v~~~~~~g~~~~-~~----~-----~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~~ 80 (212)
T smart00824 14 EYARLAAALRG-RRDVSALPLPGFGPG-EP----L-----PASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAHA 80 (212)
T ss_pred HHHHHHHhcCC-CccEEEecCCCCCCC-CC----C-----CCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHHH
Confidence 35555555543 588999998865321 11 0 012233322 23333332 23467999999999999977
Q ss_pred HHh----CCCcceEEEEecc
Q 004816 588 ALA----FRDTFKAGASLYG 603 (729)
Q Consensus 588 ~~~----~~~~~~a~v~~~~ 603 (729)
++. ++..+..++...+
T Consensus 81 ~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 81 VAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHhCCCCCcEEEEEcc
Confidence 765 4556777766544
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.5 Score=43.13 Aligned_cols=109 Identities=9% Similarity=0.144 Sum_probs=68.7
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE--Eee-e----CCCeeeeeeeCC--CCCeEEEEEec
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ--VLV-S----GSDFYAFPRMDP--RGERMAWIEWH 261 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~--~lt-~----~~~~~~~~~~SP--DG~~la~~~~~ 261 (729)
.++.-..|-|++.+++...+ .+|.+++++.+..+ .+. + .....++-+||| ||..++.+.
T Consensus 124 g~i~cvew~Pns~klasm~d----------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-- 191 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMDD----------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-- 191 (370)
T ss_pred CceeeEEEcCCCCeeEEecc----------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--
Confidence 35566789999999988865 34778888765432 221 1 123456679999 999998765
Q ss_pred CCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEE
Q 004816 262 HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH 325 (729)
Q Consensus 262 ~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~ 325 (729)
...|+.+|+. +-... ..+-.... ..+..+.+.|+-+ ++....+ .|+-+||
T Consensus 192 -------d~tl~~~D~R-T~~~~-~sI~dAHg----q~vrdlDfNpnkq~~lvt~gD-dgyvriW 242 (370)
T KOG1007|consen 192 -------DSTLQFWDLR-TMKKN-NSIEDAHG----QRVRDLDFNPNKQHILVTCGD-DGYVRIW 242 (370)
T ss_pred -------CCcEEEEEcc-chhhh-cchhhhhc----ceeeeccCCCCceEEEEEcCC-CccEEEE
Confidence 2448888876 33211 11111121 3456678999987 6656555 6776666
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.8 Score=45.38 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=36.6
Q ss_pred eeecceecCCCCEEEEEEeccCC-----CCCCcceEEEEEEcCCC-------------ceEEeeeCCCeeeeeeeCCC-C
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQ-----DALNSTTEIVAIALNGQ-------------NIQVLVSGSDFYAFPRMDPR-G 252 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~-----~~~~~~~~l~~~dl~~g-------------~~~~lt~~~~~~~~~~~SPD-G 252 (729)
.-..+.|.||| .|++...+... .+......|.+++.++. .......|.....+.+|.|. |
T Consensus 115 ~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg 193 (331)
T PF07995_consen 115 NGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTG 193 (331)
T ss_dssp -EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTT
T ss_pred CCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCC
Confidence 33568899999 45555443322 23334677899998764 22344455555567788887 5
Q ss_pred CeEEEEE
Q 004816 253 ERMAWIE 259 (729)
Q Consensus 253 ~~la~~~ 259 (729)
+ |+...
T Consensus 194 ~-l~~~d 199 (331)
T PF07995_consen 194 R-LWAAD 199 (331)
T ss_dssp E-EEEEE
T ss_pred c-EEEEc
Confidence 4 54443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.42 Score=48.98 Aligned_cols=60 Identities=5% Similarity=0.009 Sum_probs=43.3
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 317 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~ 317 (729)
....+|+||+..|.+.+.+ ..++++|+. .|.+ ...+.+++ .++..++|.|-++ +.-.+.+
T Consensus 126 iydL~Ws~d~~~l~s~s~d--------ns~~l~Dv~-~G~l--~~~~~dh~----~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 126 IYDLAWSPDSNFLVSGSVD--------NSVRLWDVH-AGQL--LAILDDHE----HYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred hhhhhccCCCceeeeeecc--------ceEEEEEec-ccee--Eeeccccc----cccceeecchhhhhhhhhccC
Confidence 3457999999999888743 347888888 6765 44555555 7888999999887 5444433
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=2.7 Score=44.95 Aligned_cols=130 Identities=11% Similarity=0.011 Sum_probs=76.6
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.|+++|.. +.+.+++|.|-.|...+ --...|... +..+...+|.|+.+.|+|... .++++-++
T Consensus 111 RW~~dGtg-Llt~GEDG~iKiWSrsG--MLRStl~Q~----~~~v~c~~W~p~S~~vl~c~g----------~h~~IKpL 173 (737)
T KOG1524|consen 111 RWSPDGAG-LLTAGEDGVIKIWSRSG--MLRSTVVQN----EESIRCARWAPNSNSIVFCQG----------GHISIKPL 173 (737)
T ss_pred ccCCCCce-eeeecCCceEEEEeccc--hHHHHHhhc----CceeEEEEECCCCCceEEecC----------CeEEEeec
Confidence 34544444 45677889898888764 222233333 345677899999999999965 35777777
Q ss_pred CCC-ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 229 NGQ-NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 229 ~~g-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
+-. ++.+--...+..-...|||....|+-.. .....-++|.. |.. .-....++ ..+..++|.|
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG--------ED~kfKvWD~~--G~~--Lf~S~~~e----y~ITSva~np 237 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSNIIASGG--------EDFRFKIWDAQ--GAN--LFTSAAEE----YAITSVAFNP 237 (737)
T ss_pred ccccceeEEeccCcEEEEeecCccccceeecC--------CceeEEeeccc--Ccc--cccCChhc----cceeeeeecc
Confidence 642 2333344455666778999888665332 12233445533 321 11112222 5667888988
Q ss_pred CCcEE
Q 004816 308 KGELF 312 (729)
Q Consensus 308 DG~l~ 312 (729)
| ++|
T Consensus 238 d-~~~ 241 (737)
T KOG1524|consen 238 E-KDY 241 (737)
T ss_pred c-cce
Confidence 8 533
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.12 Score=54.06 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=63.4
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCCcE---EEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G~~---v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
.++++||. ......+..+...+...|+. +..+++.+..+... .....+.+.+-++.+..... .
T Consensus 61 pivlVhG~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~ql~~~V~~~l~~~g--a 126 (336)
T COG1075 61 PIVLVHGL--GGGYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYS----------LAVRGEQLFAYVDEVLAKTG--A 126 (336)
T ss_pred eEEEEccC--cCCcchhhhhhhhhcchHHHhcccccccccccCCCcc----------ccccHHHHHHHHHHHHhhcC--C
Confidence 58889997 23334455555557777887 88888875421111 01123445555665555533 4
Q ss_pred CcEEEEEcChHHHHHHHHHh-CC--CcceEEEEeccc
Q 004816 571 KRLCITGGSAGGYTTLAALA-FR--DTFKAGASLYGV 604 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~--~~~~a~v~~~~~ 604 (729)
+++.++|||+||.....++. .+ .+++..+.+...
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 78999999999999987776 44 788888887764
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.25 E-value=4.1 Score=45.95 Aligned_cols=197 Identities=12% Similarity=0.036 Sum_probs=99.5
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCee---c--CCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLP---I--TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~---l--t~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
++.|+|. +.++|....+.+ .+.++ + ...+ ..-.-.+.|.=..+.|+++.-.. ..|-+-.|
T Consensus 990 gt~LL~a--qg~~I~~lplng--~~~~K~~ak~~l~~p---~~IiVGidfDC~e~mvyWtDv~g--------~SI~rasL 1054 (1289)
T KOG1214|consen 990 GTFLLYA--QGQQIGYLPLNG--TRLQKDAAKTLLSLP---GSIIVGIDFDCRERMVYWTDVAG--------RSISRASL 1054 (1289)
T ss_pred cceEEEe--ccceEEEeecCc--chhchhhhhceEecc---cceeeeeecccccceEEEeecCC--------Cccccccc
Confidence 4567777 466799988875 32221 1 1110 11223344555556555543221 35667777
Q ss_pred CCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 229 NGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 229 ~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
.+++.+.+.. +...-.+.+..--+|.++|+... ..+|-++.++ |+.+++....+. .....+.-.+
T Consensus 1055 ~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~-------lD~IevA~Ld--G~~rkvLf~tdL-----VNPR~iv~D~ 1120 (1289)
T KOG1214|consen 1055 EGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSV-------LDKIEVALLD--GSERKVLFYTDL-----VNPRAIVVDP 1120 (1289)
T ss_pred cCCCCceeecccCCCccceeeeeccceeeeeccc-------cchhheeecC--CceeeEEEeecc-----cCcceEEeec
Confidence 7777766643 22222222222234556655421 2335566665 554333333332 2334555555
Q ss_pred CCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 308 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 308 DG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
=+. |||+--. +..-.|-+.+.++...+.|..++-. ..+.+.|++ ..+.|-|.- .|..+|--+..+
T Consensus 1121 ~rgnLYwtDWn-RenPkIets~mDG~NrRilin~Dig--------LPNGLtfdp---fs~~LCWvD--AGt~rleC~~p~ 1186 (1289)
T KOG1214|consen 1121 IRGNLYWTDWN-RENPKIETSSMDGENRRILINTDIG--------LPNGLTFDP---FSKLLCWVD--AGTKRLECTLPD 1186 (1289)
T ss_pred ccCceeecccc-ccCCcceeeccCCccceEEeecccC--------CCCCceeCc---ccceeeEEe--cCCcceeEecCC
Confidence 555 8776544 5666788888877777766644311 223455553 444455443 455555555554
Q ss_pred CCceEee
Q 004816 387 GHSLSLL 393 (729)
Q Consensus 387 ~g~~~~l 393 (729)
+-..+.+
T Consensus 1187 g~gRR~i 1193 (1289)
T KOG1214|consen 1187 GTGRRVI 1193 (1289)
T ss_pred CCcchhh
Confidence 4333333
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.39 Score=44.93 Aligned_cols=96 Identities=23% Similarity=0.209 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCCCCcc-c-------------cchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC--CCcccHHHH
Q 004816 492 PPLLVKSHGGPTSEAR-G-------------ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR--WGIVDVNDC 555 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~-~-------------~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~--~~~~~~~D~ 555 (729)
..++|++||.+--... | ...+++......||.|+..|..- -+.+.+.-... +-...++-+
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~----~~kfye~k~np~kyirt~veh~ 176 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNR----ERKFYEKKRNPQKYIRTPVEHA 176 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCch----hhhhhhcccCcchhccchHHHH
Confidence 3589999996421111 1 11234555567899999998641 22222221111 111224444
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC
Q 004816 556 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD 593 (729)
Q Consensus 556 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~ 593 (729)
..+-.+++.. ...+.|+++.||+||++++-++. +|+
T Consensus 177 ~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 177 KYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 5555555443 45688999999999999999987 543
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=94.12 E-value=4.3 Score=44.07 Aligned_cols=30 Identities=10% Similarity=-0.017 Sum_probs=21.8
Q ss_pred cCCHHHHhccCCccCceEEcCCCcEEEEee
Q 004816 78 PLTADVVSGASKRLGGTAVDGHGRLIWLES 107 (729)
Q Consensus 78 ~lt~e~i~~~~~~~~~~~~~pg~~~~~~~~ 107 (729)
.++++.+...-..+.++.+.|+++++.++.
T Consensus 19 ~f~~~~va~GL~~Pw~maflPDG~llVtER 48 (454)
T TIGR03606 19 NFDKKVLLSGLNKPWALLWGPDNQLWVTER 48 (454)
T ss_pred CcEEEEEECCCCCceEEEEcCCCeEEEEEe
Confidence 355666666556788999999667887774
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.08 E-value=2.1 Score=42.77 Aligned_cols=153 Identities=11% Similarity=0.100 Sum_probs=87.4
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCC---CCCceeeecceecCCC-CEEEEEEeccCCCCCCcceE
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRF-NRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~SPdG-~~l~~~~~~~~~~~~~~~~~ 222 (729)
+.+..++.++|+.+- .+.||+|.... .++++-..+ ++. +-.+.+|.- +.++.. |....++
T Consensus 97 I~~V~l~r~riVvvl--~~~I~VytF~~---n~k~l~~~et~~NPk----GlC~~~~~~~k~~Laf-------Pg~k~Gq 160 (346)
T KOG2111|consen 97 IKAVKLRRDRIVVVL--ENKIYVYTFPD---NPKLLHVIETRSNPK----GLCSLCPTSNKSLLAF-------PGFKTGQ 160 (346)
T ss_pred eeeEEEcCCeEEEEe--cCeEEEEEcCC---ChhheeeeecccCCC----ceEeecCCCCceEEEc-------CCCccce
Confidence 445667788888774 56699998763 344443321 111 111233311 222111 1112367
Q ss_pred EEEEEcCCCce---EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 223 IVAIALNGQNI---QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 223 l~~~dl~~g~~---~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
|-++|+...+. ..+........-.+.+-+|..||-.+. .++-|.++|.. +|+.- ..+-.+.+. ..
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-------kGTLIRIFdt~-~g~~l-~E~RRG~d~---A~ 228 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-------KGTLIRIFDTE-DGTLL-QELRRGVDR---AD 228 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-------CcEEEEEEEcC-CCcEe-eeeecCCch---he
Confidence 88888876544 444444445566789999999986662 34568889988 67641 112233331 34
Q ss_pred ccCceeCCCCc-EEEEEecCCCceEEEEEEc
Q 004816 300 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 300 ~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~ 329 (729)
+..++||||+. |++.++ .|.-+|+.+..
T Consensus 229 iy~iaFSp~~s~LavsSd--KgTlHiF~l~~ 257 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSD--KGTLHIFSLRD 257 (346)
T ss_pred EEEEEeCCCccEEEEEcC--CCeEEEEEeec
Confidence 56789999999 555544 47777775543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.08 E-value=3.1 Score=44.02 Aligned_cols=179 Identities=11% Similarity=0.098 Sum_probs=90.7
Q ss_pred eEEEEEEcCCCceEEeeeCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 221 TEIVAIALNGQNIQVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
+.+-++|+..+.+.+...+. .......+.-...+||-++ .+.+|.+..+. ++... ..+..+.. ..
T Consensus 101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs--------~gGdiiih~~~-t~~~t-t~f~~~sg----qs 166 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS--------DGGDIIIHGTK-TKQKT-TTFTIDSG----QS 166 (673)
T ss_pred ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec--------cCCcEEEEecc-cCccc-cceecCCC----Ce
Confidence 34666787754443333332 3334444444556777665 34568787777 44321 12222222 45
Q ss_pred ccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeE
Q 004816 300 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 378 (729)
Q Consensus 300 ~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~ 378 (729)
+..+.+++-.+ ++....+ .|.-.|| |..+.... .........|. ..+-|.| .+..|+++-.-+ .
T Consensus 167 vRll~ys~skr~lL~~asd-~G~Vtlw--Dv~g~sp~--~~~~~~HsAP~-----~gicfsp---sne~l~vsVG~D--k 231 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASD-KGAVTLW--DVQGMSPI--FHASEAHSAPC-----RGICFSP---SNEALLVSVGYD--K 231 (673)
T ss_pred EEEeecccccceeeEeecc-CCeEEEE--eccCCCcc--cchhhhccCCc-----CcceecC---CccceEEEeccc--c
Confidence 56678999888 6655555 5655555 55443221 11100111111 1223332 444555554333 4
Q ss_pred EEEEEECCCCceE-eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 379 YLGILDDFGHSLS-LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 379 ~ly~~d~~~g~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.||.+|...++.. .|+- ......+ ..+.+.+++..++. ++||.||+.+.+
T Consensus 232 ki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~---G~~i~YD~R~~k 283 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSK---GELIAYDMRSTK 283 (673)
T ss_pred eEEEeecccccccceeee-cCCcceeeecCCceEEEeecCC---ceEEEEecccCC
Confidence 6777787554432 3332 2234444 45666777666554 488999987643
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.87 Score=47.87 Aligned_cols=196 Identities=10% Similarity=0.042 Sum_probs=108.0
Q ss_pred eeeecceecCCCCE-EEEEEeccCCCCCCcceEEEEEEcCCCceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 191 VSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 191 ~~~~~~~~SPdG~~-l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
..+...+|||..-+ ++.++.. +.+|| +..+-.++. +..-.+...+..|--||+.+| +. +..|
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~--------rvqly--~~~~~~~~k~~srFk~~v~s~~fR~DG~Lla-aG-D~sG---- 90 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSV--------RVQLY--SSVTRSVRKTFSRFKDVVYSVDFRSDGRLLA-AG-DESG---- 90 (487)
T ss_pred CcceeEecCCCCCCceEEeccc--------EEEEE--ecchhhhhhhHHhhccceeEEEeecCCeEEE-cc-CCcC----
Confidence 34567778884432 2333221 23454 544433332 333344556788989999665 33 4443
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSR 346 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~ 346 (729)
.+-++|.. +-.+ ++.+.... ..+....|+|++. ++....+ .....+| |+++..+. .|.....-+..
T Consensus 91 --~V~vfD~k-~r~i--LR~~~ah~----apv~~~~f~~~d~t~l~s~sD-d~v~k~~--d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 91 --HVKVFDMK-SRVI--LRQLYAHQ----APVHVTKFSPQDNTMLVSGSD-DKVVKYW--DLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred --cEEEeccc-cHHH--HHHHhhcc----CceeEEEecccCCeEEEecCC-CceEEEE--EcCCcEEEEEecCCcceeEe
Confidence 37888855 2222 34444444 4456678999887 4444433 3444444 55565542 22222222333
Q ss_pred CcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEE
Q 004816 347 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 347 ~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
..|++ -+++++++..-||..+||-....+.....+.. ...|..+ ..+++.+++.++.+ ++-.
T Consensus 159 g~~~~------------~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh-g~pVe~vl~lpsgs~iasAgGn----~vkV 221 (487)
T KOG0310|consen 159 GDISP------------ANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH-GCPVESVLALPSGSLIASAGGN----SVKV 221 (487)
T ss_pred ecccc------------CCCeEEEecCCCceEEEEEeccCCceeEEecC-CCceeeEEEcCCCCEEEEcCCC----eEEE
Confidence 45555 55678999888999999966555433334433 3346665 55565666666543 4666
Q ss_pred EEcCCC
Q 004816 426 VTLDDH 431 (729)
Q Consensus 426 ~d~~~~ 431 (729)
+|+.+|
T Consensus 222 WDl~~G 227 (487)
T KOG0310|consen 222 WDLTTG 227 (487)
T ss_pred EEecCC
Confidence 777744
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.96 E-value=4.2 Score=40.25 Aligned_cols=162 Identities=10% Similarity=0.066 Sum_probs=92.3
Q ss_pred EEEEEECCCCcEEEEeCCCCC-CCCeecCC---------CCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKD-SSPLPITP---------DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~-~~~~~lt~---------~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
+...+...++.+.++|++..+ .+..-|+. .+......+.+..|=|-..-+ |+.... ...|-+
T Consensus 57 rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm-FtssSF-------DhtlKV 128 (397)
T KOG4283|consen 57 RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM-FTSSSF-------DHTLKV 128 (397)
T ss_pred eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce-eecccc-------cceEEE
Confidence 455555567778888886410 11111111 111112344566677744433 332222 246888
Q ss_pred EEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 226 IALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 226 ~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
+|..+-++.....-++....-+|||=...=+.+.... ...+|.+.|++ +|.. -..+.+.- ..+-.+.|
T Consensus 129 WDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gt-----r~~~VrLCDi~-SGs~--sH~LsGHr----~~vlaV~W 196 (397)
T KOG4283|consen 129 WDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGT-----RDVQVRLCDIA-SGSF--SHTLSGHR----DGVLAVEW 196 (397)
T ss_pred eecccceeeEEeecCceeehhhcChhhhcceEEEEec-----CCCcEEEEecc-CCcc--eeeecccc----CceEEEEe
Confidence 8988766555544455555668898554322233222 34668999999 7876 34566665 56678899
Q ss_pred CCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 306 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 306 spDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
+|... ++++... .|.-+||-+.-.+|-.+.|-
T Consensus 197 sp~~e~vLatgsa-Dg~irlWDiRrasgcf~~lD 229 (397)
T KOG4283|consen 197 SPSSEWVLATGSA-DGAIRLWDIRRASGCFRVLD 229 (397)
T ss_pred ccCceeEEEecCC-CceEEEEEeecccceeEEee
Confidence 99988 6666554 67777775555555555543
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.15 Score=54.72 Aligned_cols=82 Identities=12% Similarity=-0.011 Sum_probs=55.7
Q ss_pred cchhhhHHHhhCCcEE----EE--ecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHH
Q 004816 509 ILNLSIQYWTSRGWAF----VD--VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG 582 (729)
Q Consensus 509 ~~~~~~~~la~~G~~v----~~--~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG 582 (729)
.|..+++.|.+.||.. ++ .|.|-+... ...-...+...|+.+.+.. .++|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~~------------~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPAE------------RDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchhh------------HHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCc
Confidence 6777889999888762 22 466543320 0011455666667666542 5899999999999
Q ss_pred HHHHHHHh-CC------CcceEEEEecccc
Q 004816 583 YTTLAALA-FR------DTFKAGASLYGVA 605 (729)
Q Consensus 583 ~~a~~~~~-~~------~~~~a~v~~~~~~ 605 (729)
.++..++. .+ +.++..|.+++..
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCCC
Confidence 99999887 42 2588888887654
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.2 Score=45.43 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=43.6
Q ss_pred eecceecCCCCEEEEEEeccCC-----------CCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQ-----------DALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIE 259 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~-----------~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~ 259 (729)
...++|.|||+ |++....... ........|++++.++++.+.+..+.....+.+|+|+|+ |+++.
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~td 201 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCD 201 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEc
Confidence 46789999997 4554332110 011123579999999988888877766667889999997 44443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.12 Score=57.50 Aligned_cols=71 Identities=13% Similarity=0.273 Sum_probs=42.5
Q ss_pred CCcEEEEecCCCC--CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC----CCC---CCcEEEEEcChHHHHHHHHHh
Q 004816 520 RGWAFVDVNYGGS--TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG----KAD---EKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 520 ~G~~v~~~d~rGs--~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d---~~ri~i~G~S~GG~~a~~~~~ 590 (729)
..|..+++|+-+- .-+|+...+ ..+=+..|++++++.. ..+ |..|+|+||||||.+|..+++
T Consensus 131 ~~~DFFaVDFnEe~tAm~G~~l~d---------QtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t 201 (973)
T KOG3724|consen 131 FSFDFFAVDFNEEFTAMHGHILLD---------QTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT 201 (973)
T ss_pred cccceEEEcccchhhhhccHhHHH---------HHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh
Confidence 3477888887531 112222211 2333556666665531 222 667999999999999988888
Q ss_pred CCCcceEEE
Q 004816 591 FRDTFKAGA 599 (729)
Q Consensus 591 ~~~~~~a~v 599 (729)
++...++.|
T Consensus 202 lkn~~~~sV 210 (973)
T KOG3724|consen 202 LKNEVQGSV 210 (973)
T ss_pred hhhhccchh
Confidence 664444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.5 Score=51.39 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=43.9
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeCCCeeeeeeeCCCCCeEEE
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSGSDFYAFPRMDPRGERMAW 257 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~~~~~~~~~~SPDG~~la~ 257 (729)
..+.+.+|-|||.+++.... ..|+++|...|.. ..|-...+...-.+||.||++.|-
T Consensus 13 hci~d~afkPDGsqL~lAAg----------~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAG----------SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred cchheeEECCCCceEEEecC----------CEEEEEeCCCcccccccccccceEEEEEEccCCceecc
Confidence 35688999999999988766 4599999887654 445555566777899999998663
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.80 E-value=6.1 Score=37.93 Aligned_cols=195 Identities=11% Similarity=0.082 Sum_probs=110.8
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCe-eeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~-~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
..+...++.-||++.+..-.+ ..|-++++..|....-..+.+. .-....|-|..+++-.. ..
T Consensus 18 gaV~avryN~dGnY~ltcGsd---------rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~G--------gD 80 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSD---------RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCG--------GD 80 (307)
T ss_pred cceEEEEEccCCCEEEEcCCC---------ceEEeecccccceeeeecCCCceeeeccccccccccccCC--------CC
Confidence 445677889999986554332 3466677776655443344332 34556778888887554 23
Q ss_pred cEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcc
Q 004816 270 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 349 (729)
Q Consensus 270 ~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 349 (729)
..++++|++ +|+. .+.+.++. ..+..++|..+..+++...- .-..++|-.....-++.++..+..+
T Consensus 81 k~v~vwDV~-TGkv--~Rr~rgH~----aqVNtV~fNeesSVv~Sgsf-D~s~r~wDCRS~s~ePiQildea~D------ 146 (307)
T KOG0316|consen 81 KAVQVWDVN-TGKV--DRRFRGHL----AQVNTVRFNEESSVVASGSF-DSSVRLWDCRSRSFEPIQILDEAKD------ 146 (307)
T ss_pred ceEEEEEcc-cCee--eeeccccc----ceeeEEEecCcceEEEeccc-cceeEEEEcccCCCCccchhhhhcC------
Confidence 569999999 8876 56677776 56678889877666665543 2334444332333344455432211
Q ss_pred cccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCC--cceEEe--eeeCCEEEEEEeCCCCCceEEE
Q 004816 350 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF--TDIDNI--TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~--~~v~~~--~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
+..++. =.++.++...-+|..+.|-+. .|. ++.+. ..|..+ +.+++..++..-+ ..+.+
T Consensus 147 --~V~Si~------v~~heIvaGS~DGtvRtydiR--~G~---l~sDy~g~pit~vs~s~d~nc~La~~l~----stlrL 209 (307)
T KOG0316|consen 147 --GVSSID------VAEHEIVAGSVDGTVRTYDIR--KGT---LSSDYFGHPITSVSFSKDGNCSLASSLD----STLRL 209 (307)
T ss_pred --ceeEEE------ecccEEEeeccCCcEEEEEee--cce---eehhhcCCcceeEEecCCCCEEEEeecc----ceeee
Confidence 111111 123556666678887777553 333 22222 235555 4455544443322 35778
Q ss_pred EEcCCCcc
Q 004816 426 VTLDDHKL 433 (729)
Q Consensus 426 ~d~~~~~~ 433 (729)
+|.++|++
T Consensus 210 lDk~tGkl 217 (307)
T KOG0316|consen 210 LDKETGKL 217 (307)
T ss_pred cccchhHH
Confidence 88888875
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.78 E-value=4.6 Score=42.26 Aligned_cols=123 Identities=10% Similarity=0.011 Sum_probs=70.0
Q ss_pred ECCEEEEEECCC------CcEEEEeCCCCCCCCeecCCCCC-----------CCceeeecceecCCCCEEEEEEeccCCC
Q 004816 153 FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYG-----------EPLVSYADGIFDPRFNRYVTVREDRRQD 215 (729)
Q Consensus 153 ~~~~i~~~~~~~------~~l~~~d~~~~~~~~~~lt~~~~-----------~~~~~~~~~~~SPdG~~l~~~~~~~~~~ 215 (729)
.++.++++.+.. ..|+.++.++ ...+.+.-... .....+...+++|||++|+.+.+..-..
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~G--~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~ 171 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLDG--RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQ 171 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCCC--cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccC
Confidence 555777777777 7999999885 43333311100 0112346788999999887776654211
Q ss_pred C-------CCcceEEEEEEcCC-Cc-eEEe----ee-----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEe
Q 004816 216 A-------LNSTTEIVAIALNG-QN-IQVL----VS-----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI 277 (729)
Q Consensus 216 ~-------~~~~~~l~~~dl~~-g~-~~~l----t~-----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~ 277 (729)
. ......|+.+|..+ ++ ..+. .. .....+...+-|||+. +.+..+.....-...+||.+++
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l-LvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL-LVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE-EEEEccCCCCccceEEEEEEEc
Confidence 1 11136788888876 31 2222 11 1233456678889884 4455332211113567888887
Q ss_pred c
Q 004816 278 S 278 (729)
Q Consensus 278 ~ 278 (729)
.
T Consensus 251 ~ 251 (326)
T PF13449_consen 251 S 251 (326)
T ss_pred c
Confidence 6
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.77 E-value=3.1 Score=41.35 Aligned_cols=155 Identities=9% Similarity=0.083 Sum_probs=86.4
Q ss_pred eEEEECC-EEEEEECCCCcEEEEeCCCCCCC----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 149 ~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
.+.+.+. .|+.+...++.|-++|... -. -+.++. ...+...+|.|-|.+|+.-.+ + ..+
T Consensus 177 ~l~FHPre~ILiS~srD~tvKlFDfsK--~saKrA~K~~qd-----~~~vrsiSfHPsGefllvgTd-H--------p~~ 240 (430)
T KOG0640|consen 177 DLDFHPRETILISGSRDNTVKLFDFSK--TSAKRAFKVFQD-----TEPVRSISFHPSGEFLLVGTD-H--------PTL 240 (430)
T ss_pred ceeecchhheEEeccCCCeEEEEeccc--HHHHHHHHHhhc-----cceeeeEeecCCCceEEEecC-C--------Cce
Confidence 3444433 6788888888999999864 22 223333 255678899999999765543 2 235
Q ss_pred EEEEcCCCceEEeee----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 224 VAIALNGQNIQVLVS----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 224 ~~~dl~~g~~~~lt~----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
.++|+++-+.-.-.. ..+..+...+|+.|+ |+.+...+ ..|.++|=- ++.. ++.+.....+ ..
T Consensus 241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkD-------G~IklwDGV-S~rC--v~t~~~AH~g--se 307 (430)
T KOG0640|consen 241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKD-------GAIKLWDGV-SNRC--VRTIGNAHGG--SE 307 (430)
T ss_pred eEEeccceeEeeecCcccccccceeEEEecCCcc-EEEEeccC-------CcEEeeccc-cHHH--HHHHHhhcCC--ce
Confidence 556776543221111 123456788999998 66555332 236666522 2322 2222222111 34
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
+....|+.||+.+..+.. .. -+.++.+.+|...
T Consensus 308 vcSa~Ftkn~kyiLsSG~-DS--~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGK-DS--TVKLWEISTGRML 340 (430)
T ss_pred eeeEEEccCCeEEeecCC-cc--eeeeeeecCCceE
Confidence 567789999985545433 23 3344455566543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.7 Score=42.93 Aligned_cols=141 Identities=9% Similarity=0.045 Sum_probs=80.1
Q ss_pred eEEEEEEcCCCce----EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 221 TEIVAIALNGQNI----QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 221 ~~l~~~dl~~g~~----~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
..|++....+|.- +.++.........+|||..+.+.+...- ...|.++|+. .+......+....+
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~-------DgsIrIWDiR-s~~~~~~~~~kAh~--- 302 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC-------DGSIRIWDIR-SGPKKAAVSTKAHN--- 302 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec-------CceEEEEEec-CCCccceeEeeccC---
Confidence 4577766666543 2344444566788999998887665532 2348888887 55333333444454
Q ss_pred cccccCceeCCCCcEEEEEecCCCceEEEEEE-cCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEE
Q 004816 297 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWI-ESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 374 (729)
Q Consensus 297 ~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d-~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~ 374 (729)
..+.-+.|+-+-.++....+ .|.+.||-+. ...+++.... -....++...|.| ....++..+..
T Consensus 303 -sDVNVISWnr~~~lLasG~D-dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p------------~e~s~iaasg~ 368 (440)
T KOG0302|consen 303 -SDVNVISWNRREPLLASGGD-DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP------------HEDSVIAASGE 368 (440)
T ss_pred -CceeeEEccCCcceeeecCC-CceEEEEEhhhccCCCcceeEEeccCCeeEEEecc------------ccCceEEeccC
Confidence 45567789876554444444 6777776332 2334322222 2333444556665 34455556666
Q ss_pred CCeEEEEEEECC
Q 004816 375 NGRSYLGILDDF 386 (729)
Q Consensus 375 ~g~~~ly~~d~~ 386 (729)
+....||-+.++
T Consensus 369 D~QitiWDlsvE 380 (440)
T KOG0302|consen 369 DNQITIWDLSVE 380 (440)
T ss_pred CCcEEEEEeecc
Confidence 666677755543
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.17 Score=54.22 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=52.5
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc----ccHHHHHHHHHHHHHHHhC
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 712 (729)
+|+.|+...-|+.. .+...|+.+|+..|.++.+.+.++-.|+|.+- ....+.-+..++=++..|+
T Consensus 788 Pp~~i~ac~mDP~L--DD~vmfA~kLr~lG~~v~l~vle~lPHGFLnft~ls~E~~~~~~~CI~rl~~~L~ 856 (880)
T KOG4388|consen 788 PPVHIVACAMDPML--DDSVMFARKLRNLGQPVTLRVLEDLPHGFLNFTALSRETRQAAELCIERLRLVLT 856 (880)
T ss_pred CCceEEEeccCcch--hHHHHHHHHHHhcCCceeehhhhcCCccceeHHhhCHHHHHHHHHHHHHHHHHhC
Confidence 57888888888874 67889999999999999999999999998542 2234566677788888887
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.64 E-value=7.1 Score=37.54 Aligned_cols=219 Identities=11% Similarity=0.126 Sum_probs=101.2
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecC-CCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SP-dG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
..|....+.++|++-..+.+.++|... ....+.+-+.+. ...+.+-- +|-+.+.+.-. ....++
T Consensus 20 p~w~~~~~sLl~VDi~ag~v~r~D~~q--n~v~ra~ie~p~----~ag~ilpv~~~~q~~~v~~G---------~kf~i~ 84 (310)
T KOG4499|consen 20 PHWDVERQSLLYVDIEAGEVHRYDIEQ--NKVYRAKIEGPP----SAGFILPVEGGPQEFAVGCG---------SKFVIV 84 (310)
T ss_pred CceEEecceEEEEEeccCceehhhhhh--hheEEEEEecCc----ceeEEEEecCCCceEEEeec---------ceEEEE
Confidence 456666778899988888888888876 555544433110 12222211 22222222110 223344
Q ss_pred EcCCCc--eEEe---ee---C--CCeeeeeeeCCCCCeEEEEE-ecCCCC--CCCCcEEEEEEecCCCCeeeeEEecCCC
Q 004816 227 ALNGQN--IQVL---VS---G--SDFYAFPRMDPRGERMAWIE-WHHPNM--PWDKAELWVGYISENGDVYKRVCVAGFD 293 (729)
Q Consensus 227 dl~~g~--~~~l---t~---~--~~~~~~~~~SPDG~~la~~~-~~~~~~--~~~~~~l~~~d~~~~g~~~~~~~~~~~~ 293 (729)
..++-. .+.+ .+ + ..+.+.-..+||||+ |.. +.+.+. ..-...||..-+ ++++ .+..+.-
T Consensus 85 nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gry--y~GtMad~~~~le~~~g~Ly~~~~--~h~v---~~i~~~v 157 (310)
T KOG4499|consen 85 NWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRY--YGGTMADFGDDLEPIGGELYSWLA--GHQV---ELIWNCV 157 (310)
T ss_pred EcccccceeeeeeeccccCchHHhcccccCccCCCCce--eeeeeccccccccccccEEEEecc--CCCc---eeeehhc
Confidence 444211 1111 10 0 123345567999997 433 222211 111345666543 3443 2222221
Q ss_pred CCccccccCceeCCCCc-EEEEEecCCCceEE--EEEEcCCCeE---EEeeccCccccCCcccccCcceeeeeecCCCCE
Q 004816 294 PTIVESPTEPKWSSKGE-LFFVTDRKNGFWNL--HKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL 367 (729)
Q Consensus 294 ~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l--~~~d~~~g~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 367 (729)
.-...++|+.|-+ +||+ +. -...+ |-+|..+|.. +.|.+.... .|.=.+..+..... ..+.
T Consensus 158 ----~IsNgl~Wd~d~K~fY~i-Ds--ln~~V~a~dyd~~tG~~snr~~i~dlrk~--~~~e~~~PDGm~ID----~eG~ 224 (310)
T KOG4499|consen 158 ----GISNGLAWDSDAKKFYYI-DS--LNYEVDAYDYDCPTGDLSNRKVIFDLRKS--QPFESLEPDGMTID----TEGN 224 (310)
T ss_pred ----cCCccccccccCcEEEEE-cc--CceEEeeeecCCCcccccCcceeEEeccC--CCcCCCCCCcceEc----cCCc
Confidence 2335789999988 5554 33 23445 6777888753 344422111 11101111122221 2334
Q ss_pred EEEEEEECCeEEEEEEECCCCce-EeeccCCcceEEe
Q 004816 368 IACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI 403 (729)
Q Consensus 368 l~~~s~~~g~~~ly~~d~~~g~~-~~lt~~~~~v~~~ 403 (729)
||++.... ..++.+|+.+|++ ..+-.+...+.+.
T Consensus 225 L~Va~~ng--~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 225 LYVATFNG--GTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred EEEEEecC--cEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 54444332 3688889988874 3343444445444
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.56 E-value=1.3 Score=43.94 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=88.5
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE---eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV---LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~---lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
.+++..|.|...-|+-.+.+ ..|-++|..-...++ +..+........|.|.|.+|+... +++-
T Consensus 174 evn~l~FHPre~ILiS~srD---------~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-dHp~---- 239 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRD---------NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-DHPT---- 239 (430)
T ss_pred cccceeecchhheEEeccCC---------CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-CCCc----
Confidence 35677899988755443332 245566765322221 222334456678999999887544 5543
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCe-EEEee--ccCcccc
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE-VLAIY--SLDAEFS 345 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~-~~~l~--~~~~~~~ 345 (729)
+.++|+. +-+. -+..+.+.+....+..+.+|+.|+||.+... .|.-.|| |--+++ ++.+- .+..++
T Consensus 240 ---~rlYdv~-T~Qc---fvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-DG~Iklw--DGVS~rCv~t~~~AH~gsev- 308 (430)
T KOG0640|consen 240 ---LRLYDVN-TYQC---FVSANPDDQHTGAITQVRYSSTGSLYVTASK-DGAIKLW--DGVSNRCVRTIGNAHGGSEV- 308 (430)
T ss_pred ---eeEEecc-ceeE---eeecCcccccccceeEEEecCCccEEEEecc-CCcEEee--ccccHHHHHHHHhhcCCcee-
Confidence 8888887 3221 1111222111256778899999998888877 6766665 432222 11111 111122
Q ss_pred CCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 346 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 346 ~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
.+..|. ++++++.++..+....||.+.
T Consensus 309 --------cSa~Ft----kn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 309 --------CSAVFT----KNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred --------eeEEEc----cCCeEEeecCCcceeeeeeec
Confidence 233444 666777788777777777664
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=4.5 Score=45.69 Aligned_cols=192 Identities=6% Similarity=-0.098 Sum_probs=98.5
Q ss_pred eEEEEEEcCCCceEEeeeCCCeeeee-eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 221 TEIVAIALNGQNIQVLVSGSDFYAFP-RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~~~~~~~-~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
..++.+|+.+++...+..-...-... ...-+| +|+.+...... .....++++|.. +++... .+..... ..
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~-~lyv~GG~~~~--~~~~~v~~yd~~-~~~W~~---~~~lp~~--r~ 381 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNN-RIYVIGGIYNS--ISLNTVESWKPG-ESKWRE---EPPLIFP--RY 381 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEEEECC-EEEEEeCCCCC--EecceEEEEcCC-CCceee---CCCcCcC--Cc
Confidence 47899999988777665422111111 112244 46655522211 123568888887 555422 2211100 11
Q ss_pred ccCceeCCCCcEEEEEecCCC---ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC-
Q 004816 300 PTEPKWSSKGELFFVTDRKNG---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN- 375 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g---~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~- 375 (729)
... .-.-+|++|.......+ ...++++|+.+++++.+.+.... ... ..... -++.||+.....
T Consensus 382 ~~~-~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~----r~~---~~~~~-----~~~~iyv~GG~~~ 448 (534)
T PHA03098 382 NPC-VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS----HYG---GCAIY-----HDGKIYVIGGISY 448 (534)
T ss_pred cce-EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc----ccC---ceEEE-----ECCEEEEECCccC
Confidence 111 22345666655432111 25688999999988877643211 110 01111 234555544321
Q ss_pred -----CeEEEEEEECCCCceEeeccCCcc--eEEeeeeCCEEEEEEeCCCC--CceEEEEEcCCCcce
Q 004816 376 -----GRSYLGILDDFGHSLSLLDIPFTD--IDNITLGNDCLFVEGASGVE--PSSVAKVTLDDHKLK 434 (729)
Q Consensus 376 -----g~~~ly~~d~~~g~~~~lt~~~~~--v~~~~~~~~~~~~~~~~~~~--~~~ly~~d~~~~~~~ 434 (729)
....++.+|+.+++++.+...... ...+..-++.++++++.... ...++.+|+++++.+
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 134599999999999887642211 11222236677777654432 245888888887753
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.12 Score=50.60 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.7
Q ss_pred CCcEEEEEcChHHHHHHHHHh
Q 004816 570 EKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~ 590 (729)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 368999999999999876664
|
|
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.47 Score=50.54 Aligned_cols=112 Identities=12% Similarity=0.048 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCCCcccc-c--hhhhHHHhhCCcEEEEecCCCCCCCchhHHHh------hccCCCcccHHHHHHHHH
Q 004816 490 EKPPLLVKSHGGPTSEARGI-L--NLSIQYWTSRGWAFVDVNYGGSTGYGREFRER------LLGRWGIVDVNDCCSCAT 560 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~-~--~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~------~~~~~~~~~~~D~~~~~~ 560 (729)
...|+.|++-|.......+. . ..+.+.-.+.|-.|+.+.+|= ||.+.... +..---.+.+.|+...|+
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~~st~nlk~LSs~QALaDla~fI~ 160 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGDLSTSNLKYLSSLQALADLAEFIK 160 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCCCcccchhhhhHHHHHHHHHHHHH
Confidence 34588888877422221121 1 134455556799999999983 34321110 110011234788888898
Q ss_pred HHHhCC-CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 561 FLVGSG-KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 561 ~l~~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
.+-.+. .-+..+.+.+|.||-|.++.++=. +|+.+.+.|+-++.
T Consensus 161 ~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSap 206 (514)
T KOG2182|consen 161 AMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAP 206 (514)
T ss_pred HHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccc
Confidence 887774 445569999999999999999877 99999999987764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.33 E-value=2.3 Score=43.45 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=69.3
Q ss_pred eeeecceecCCCCEEEEE-EeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTV-REDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~-~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
..+.+..|++. . ++|. +.+ +.|.++|+.+|... .++ +.........+|+.+.|+-.+.+
T Consensus 261 ~~Vs~V~w~d~-~-v~yS~SwD---------HTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssd------- 321 (423)
T KOG0313|consen 261 EPVSSVVWSDA-T-VIYSVSWD---------HTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSD------- 321 (423)
T ss_pred cceeeEEEcCC-C-ceEeeccc---------ceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCC-------
Confidence 45677889883 3 4554 444 46999999987654 444 34455667889998877755532
Q ss_pred CcEEEEEEecC-CCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEE
Q 004816 269 KAELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 325 (729)
Q Consensus 269 ~~~l~~~d~~~-~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~ 325 (729)
..|.++|... +|... ...+.++. ..+..+.|+|-....|++....+...||
T Consensus 322 -r~irl~DPR~~~gs~v-~~s~~gH~----nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 322 -RHIRLWDPRTGDGSVV-SQSLIGHK----NWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred -CceeecCCCCCCCcee-EEeeecch----hhhhheecCCCCceEEEEEecCCeEEEE
Confidence 2377788762 33432 33455665 6678899999877444443325655565
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.28 E-value=9.4 Score=37.87 Aligned_cols=155 Identities=11% Similarity=0.069 Sum_probs=84.4
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcc----cccccccCCce--EEEECCEEEEEEC
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAV----RTTAQEYGGGA--FRIFGDTVIFSNY 162 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~----~~~~~~~~~~~--~~~~~~~i~~~~~ 162 (729)
.+..+++.+ .+++.. .+. .+|.+.+|-....+.-+..-++....+. ....|.|++.. |.|.+..++.+..
T Consensus 45 svNsL~id~tegryml-SGg--adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYML-SGG--ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred ccceeeeccccceEEe-ecC--CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 556677776 444333 222 2455556544332111222233222221 12345566543 4555666666666
Q ss_pred CCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCC--CEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-
Q 004816 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF--NRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG- 239 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG--~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~- 239 (729)
.+-.|-+||..+ -+....-.- +..+..-+|||=. .-|+.+..+. .++-+-|+++|.-.-...|
T Consensus 122 FDhtlKVWDtnT--lQ~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~--------~~VrLCDi~SGs~sH~LsGH 187 (397)
T KOG4283|consen 122 FDHTLKVWDTNT--LQEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRD--------VQVRLCDIASGSFSHTLSGH 187 (397)
T ss_pred ccceEEEeeccc--ceeeEEeec----CceeehhhcChhhhcceEEEEecCC--------CcEEEEeccCCcceeeeccc
Confidence 677899999876 322111111 1334445688843 3344443332 4577779999987554444
Q ss_pred CCeeeeeeeCCCCCeEEEEEec
Q 004816 240 SDFYAFPRMDPRGERMAWIEWH 261 (729)
Q Consensus 240 ~~~~~~~~~SPDG~~la~~~~~ 261 (729)
-+..-...|||...+|.++...
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsa 209 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSA 209 (397)
T ss_pred cCceEEEEeccCceeEEEecCC
Confidence 3456678999999999988743
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.25 E-value=23 Score=42.24 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=40.9
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEe
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEW 260 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~ 260 (729)
.+..+.|--|+..|.++... +.|.++|.++.....+..-.......+||||++.++++..
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~---------G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITAL---------GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITG 129 (1265)
T ss_pred ceEEEEEecccceEEEEecC---------CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC
Confidence 44555666677776555442 3577778777666555554455667899999999999883
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.1 Score=44.66 Aligned_cols=98 Identities=13% Similarity=0.192 Sum_probs=62.3
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc----eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN----IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~----~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
..-+|++|+..++....++. -+||.. .+.+ ...|.......++..|+|.+.+|.-.+.|+.
T Consensus 14 tchAwn~drt~iAv~~~~~e-------vhiy~~--~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn------ 78 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNNHE-------VHIYSM--LGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN------ 78 (361)
T ss_pred eeeeecCCCceEEeccCCce-------EEEEEe--cCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC------
Confidence 33479999999887766541 345544 4443 2334444566788999999999987775543
Q ss_pred cEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEE
Q 004816 270 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 270 ~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
-|++....+++..+...+...+ .....+.|+|.+..+
T Consensus 79 --ayVw~~~~~~~WkptlvLlRiN----rAAt~V~WsP~enkF 115 (361)
T KOG1523|consen 79 --AYVWTQPSGGTWKPTLVLLRIN----RAATCVKWSPKENKF 115 (361)
T ss_pred --ccccccCCCCeeccceeEEEec----cceeeEeecCcCceE
Confidence 3444442256655544444454 556788999998733
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=7 Score=44.12 Aligned_cols=200 Identities=10% Similarity=-0.083 Sum_probs=97.8
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC-eee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD-FYA 244 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~-~~~ 244 (729)
++|.+|+.+ .+-..++.-+ ..+.......-+|+ |+.+..... ......++++|..+++.+.+.+-+. ...
T Consensus 312 ~v~~yd~~~--~~W~~~~~~~---~~R~~~~~~~~~~~-lyv~GG~~~---~~~~~~v~~yd~~~~~W~~~~~lp~~r~~ 382 (534)
T PHA03098 312 SVVSYDTKT--KSWNKVPELI---YPRKNPGVTVFNNR-IYVIGGIYN---SISLNTVESWKPGESKWREEPPLIFPRYN 382 (534)
T ss_pred cEEEEeCCC--CeeeECCCCC---cccccceEEEECCE-EEEEeCCCC---CEecceEEEEcCCCCceeeCCCcCcCCcc
Confidence 689999987 6666665542 11222222233444 444432221 1123568889998877666543211 111
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCC-----
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN----- 319 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~----- 319 (729)
...-.-+| +|+.......+. .....++++|+. +++.... ...... .. ......-+++||.......
T Consensus 383 ~~~~~~~~-~iYv~GG~~~~~-~~~~~v~~yd~~-t~~W~~~---~~~p~~--r~-~~~~~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 383 PCVVNVNN-LIYVIGGISKND-ELLKTVECFSLN-TNKWSKG---SPLPIS--HY-GGCAIYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred ceEEEECC-EEEEECCcCCCC-cccceEEEEeCC-CCeeeec---CCCCcc--cc-CceEEEECCEEEEECCccCCCCCc
Confidence 11122244 565554211111 013568899987 5554322 211100 11 1223334666665543211
Q ss_pred CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC---eEEEEEEECCCCceEeecc
Q 004816 320 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g---~~~ly~~d~~~g~~~~lt~ 395 (729)
....++++|+.+++++.+.... .+.+.. ..... + +.||+.....+ ...++.+|+++.+++.+..
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~~~----~~r~~~---~~~~~----~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSSLN----FPRINA---SLCIF----N-NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ccceEEEecCCCCceeeCCCCC----cccccc---eEEEE----C-CEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 1345899999999988875322 111111 11111 3 34554443221 3468888888888877754
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.25 Score=51.14 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=58.6
Q ss_pred hhCCcEEEEecCCCCC---CCchh-HHHhhccC--CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-
Q 004816 518 TSRGWAFVDVNYGGST---GYGRE-FRERLLGR--WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA- 590 (729)
Q Consensus 518 a~~G~~v~~~d~rGs~---g~g~~-~~~~~~~~--~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~- 590 (729)
.+.+-.++.+.+|=-| .+|.. +.....-. ...+...|....+.+|+.........|+++|.|+||+++.++=.
T Consensus 108 p~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlK 187 (492)
T KOG2183|consen 108 PELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLK 187 (492)
T ss_pred HhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhc
Confidence 3457788888877422 24443 22211111 12334889999999998886666788999999999999999876
Q ss_pred CCCcceEEEEec
Q 004816 591 FRDTFKAGASLY 602 (729)
Q Consensus 591 ~~~~~~a~v~~~ 602 (729)
+|..+.++.+.+
T Consensus 188 YPHiv~GAlAaS 199 (492)
T KOG2183|consen 188 YPHIVLGALAAS 199 (492)
T ss_pred Chhhhhhhhhcc
Confidence 888777766544
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.91 E-value=6.1 Score=42.82 Aligned_cols=144 Identities=9% Similarity=0.046 Sum_probs=84.2
Q ss_pred EEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 158 IFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
+......|.++++++.+ ++. .+++.+. ...++....|+-+ -.++|+.... ..+..++...+...++
T Consensus 73 lvlgt~~g~v~~ys~~~--g~it~~~st~~--h~~~v~~~~~~~~-~~ciyS~~ad--------~~v~~~~~~~~~~~~~ 139 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAG--GEITAKLSTDK--HYGNVNEILDAQR-LGCIYSVGAD--------LKVVYILEKEKVIIRI 139 (541)
T ss_pred EEeecCCccEEEEEecC--CeEEEEEecCC--CCCcceeeecccc-cCceEecCCc--------eeEEEEecccceeeee
Confidence 33333456899999987 543 3444321 1223344334433 3345555433 4677788887777666
Q ss_pred ee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC--Cc--E
Q 004816 237 VS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK--GE--L 311 (729)
Q Consensus 237 t~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD--G~--l 311 (729)
.. ........+.||||+.|+..+ .+|-++|++ ++++ +..++++. .-+..+.|..+ |- .
T Consensus 140 ~~~~~~~~~sl~is~D~~~l~~as----------~~ik~~~~~-~kev--v~~ftgh~----s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 140 WKEQKPLVSSLCISPDGKILLTAS----------RQIKVLDIE-TKEV--VITFTGHG----SPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred eccCCCccceEEEcCCCCEEEecc----------ceEEEEEcc-CceE--EEEecCCC----cceEEEEEEEeccccccc
Confidence 54 344567789999999887544 459999998 7776 66777775 44444555443 32 3
Q ss_pred EEEEec-CCCceEEEEEEcCC
Q 004816 312 FFVTDR-KNGFWNLHKWIESN 331 (729)
Q Consensus 312 ~~~~~~-~~g~~~l~~~d~~~ 331 (729)
+|.+.. ..-...+|.++-+.
T Consensus 203 ~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred eeeeccccccceeEEEEEccc
Confidence 444433 12234566666533
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=92.89 E-value=3 Score=45.37 Aligned_cols=142 Identities=12% Similarity=0.016 Sum_probs=79.2
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee--e--CCC
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV--S--GSD 241 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt--~--~~~ 241 (729)
+|.++...+ ++.+.|...- .+...-+..||-...+.+++.+..-...+...-+-++++...++.+++. . -..
T Consensus 185 Nl~L~~~~~--~klEvL~yir--TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s 260 (545)
T PF11768_consen 185 NLHLLSCSG--GKLEVLSYIR--TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPS 260 (545)
T ss_pred cEEEEEecC--CcEEEEEEEE--ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCC
Confidence 677777766 5666654320 0011245567773333344444321111122345556666666666552 2 233
Q ss_pred eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCc
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF 321 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~ 321 (729)
.....++||+.++++..-. +..|.++|.. .+.. ...... ..+..++|.|||.++++.+. +|.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~--------DgSiiLyD~~-~~~t----~~~ka~----~~P~~iaWHp~gai~~V~s~-qGe 322 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCE--------DGSIILYDTT-RGVT----LLAKAE----FIPTLIAWHPDGAIFVVGSE-QGE 322 (545)
T ss_pred cceEEecCcccceEEEEec--------CCeEEEEEcC-CCee----eeeeec----ccceEEEEcCCCcEEEEEcC-Cce
Confidence 4556789999999886652 3448899876 3432 222222 34467899999997777766 676
Q ss_pred eEEEEEEc
Q 004816 322 WNLHKWIE 329 (729)
Q Consensus 322 ~~l~~~d~ 329 (729)
-++|=+-+
T Consensus 323 lQ~FD~AL 330 (545)
T PF11768_consen 323 LQCFDMAL 330 (545)
T ss_pred EEEEEeec
Confidence 66653333
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.83 E-value=7.2 Score=40.38 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=34.0
Q ss_pred cccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeecc-CccccCCcccccC
Q 004816 299 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGI 353 (729)
Q Consensus 299 ~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~ 353 (729)
.+...+|+||+. +.+.+.+ ..++.+|+..|+...+..+ ...+....|.+.+
T Consensus 125 diydL~Ws~d~~~l~s~s~d----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 125 DIYDLAWSPDSNFLVSGSVD----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN 177 (434)
T ss_pred chhhhhccCCCceeeeeecc----ceEEEEEeccceeEeeccccccccceeecchhh
Confidence 445789999998 5554433 4577788888887777643 3344556777643
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.77 E-value=10 Score=42.30 Aligned_cols=242 Identities=6% Similarity=-0.045 Sum_probs=0.0
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCC--CCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~--~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
++..+++.+.+-. ..|-||+++..+ +..+.++. . .....-..+|++...+++..... .-.+|.+
T Consensus 40 c~dst~~~l~~Gs-S~G~lyl~~R~~--~~~~~~~~~~~----~~~~~~~~vs~~e~lvAagt~~g-------~V~v~ql 105 (726)
T KOG3621|consen 40 CVDATEEYLAMGS-SAGSVYLYNRHT--GEMRKLKNEGA----TGITCVRSVSSVEYLVAAGTASG-------RVSVFQL 105 (726)
T ss_pred EeecCCceEEEec-ccceEEEEecCc--hhhhcccccCc----cceEEEEEecchhHhhhhhcCCc-------eEEeehh
Q ss_pred EcCC-CceEEeeeCCC----eeeeeeeCCCCCeEEEEEecCCCCCCCCcEE-----------------------------
Q 004816 227 ALNG-QNIQVLVSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAEL----------------------------- 272 (729)
Q Consensus 227 dl~~-g~~~~lt~~~~----~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l----------------------------- 272 (729)
.... +....++.... ..+...||+||+++++-. ....|
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD--------~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD 177 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD--------SQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLD 177 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecccccEEeecC--------CCceEEEEEechhhhhccccceeeccCcceEEee
Q ss_pred --------------EEEEecCCCCeeeeEEecCCCCCccccccCceeCCC----Cc-EEEEEecCCCceEEEEEEcCCCe
Q 004816 273 --------------WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK----GE-LFFVTDRKNGFWNLHKWIESNNE 333 (729)
Q Consensus 273 --------------~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD----G~-l~~~~~~~~g~~~l~~~d~~~g~ 333 (729)
.+.+.+ .+++.++-.-+... ....+.+|-|. .+ .+|.+.. ..++|.+|.++.-
T Consensus 178 ~~q~~LLVStl~r~~Lc~tE-~eti~QIG~k~R~~----~~~~GACF~~g~~~~q~~~IycaRP---G~RlWead~~G~V 249 (726)
T KOG3621|consen 178 YLQSYLLVSTLTRCILCQTE-AETITQIGKKPRKS----LIDFGACFFPGQCKAQKPQIYCARP---GLRLWEADFAGEV 249 (726)
T ss_pred cccceehHhhhhhhheeecc-hhHHHHhcCCCcCC----ccccceEEeeccccCCCceEEEecC---CCceEEeecceeE
Q ss_pred EEEeeccCccccCCcccccCcc--------------------eeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 334 VLAIYSLDAEFSRPLWVFGINS--------------------YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 334 ~~~l~~~~~~~~~~~w~~~~~~--------------------~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
.+...-.+.-...|.|.....+ ..++ .+..++.-.+.. ||+++....++..-
T Consensus 250 ~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l----~~~~vLa~te~G----iyv~d~~~~~v~l~ 321 (726)
T KOG3621|consen 250 IKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTL----HSDRVLAWTEVG----IYVFDSNNSQVYLW 321 (726)
T ss_pred EEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEe----ecceEEEeecce----EEEEEeccceEEEe
Q ss_pred ccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 394 DIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 394 t~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.....+|.+++..++.++++..+. .++.+.+.+..
T Consensus 322 se~~~DI~dVs~~~neiFvL~~d~----~l~~~sv~s~q 356 (726)
T KOG3621|consen 322 SEGGHDILDVSHCGNEIFVLNLDR----GLKVESVASRQ 356 (726)
T ss_pred ecCCCceeEEeecCceEEEEecCC----ceeEEEeehhH
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.77 E-value=2.2 Score=47.88 Aligned_cols=200 Identities=15% Similarity=0.171 Sum_probs=115.6
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEEE
Q 004816 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170 (729)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 170 (729)
-++.++= .+.|||++... + .|-+.... ++++..++..+ +.++-+-+..+....++|.+.....|-+.
T Consensus 1028 VGidfDC~e~mvyWtDv~g----~-SI~rasL~-G~Ep~ti~n~~------L~SPEGiAVDh~~Rn~ywtDS~lD~IevA 1095 (1289)
T KOG1214|consen 1028 VGIDFDCRERMVYWTDVAG----R-SISRASLE-GAEPETIVNSG------LISPEGIAVDHIRRNMYWTDSVLDKIEVA 1095 (1289)
T ss_pred eeeecccccceEEEeecCC----C-cccccccc-CCCCceeeccc------CCCccceeeeeccceeeeeccccchhhee
Confidence 3555555 67788887632 2 23333333 23555555433 23334555666777888887666677777
Q ss_pred eCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeeeeeeC
Q 004816 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFPRMD 249 (729)
Q Consensus 171 d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~~~S 249 (729)
.|++ .+.+.|...+ -.....++..|=+..|+|+.++.. +..|-..++++...|.|.. +-+--++..|.
T Consensus 1096 ~LdG--~~rkvLf~td---LVNPR~iv~D~~rgnLYwtDWnRe------nPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1096 LLDG--SERKVLFYTD---LVNPRAIVVDPIRGNLYWTDWNRE------NPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred ecCC--ceeeEEEeec---ccCcceEEeecccCceeecccccc------CCcceeeccCCccceEEeecccCCCCCceeC
Confidence 7876 5555554331 233366778898888998876653 2357777888766666654 33445678899
Q ss_pred CCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEE
Q 004816 250 PRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 250 PDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d 328 (729)
|..+.|.|+.-.. .+|-....+ |. .++.++.+.. + -+....+++ +||+--+ ...|..++
T Consensus 1165 pfs~~LCWvDAGt-------~rleC~~p~--g~-gRR~i~~~Lq-----Y--PF~itsy~~~fY~TDWk---~n~vvsv~ 1224 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGT-------KRLECTLPD--GT-GRRVIQNNLQ-----Y--PFSITSYADHFYHTDWK---RNGVVSVN 1224 (1289)
T ss_pred cccceeeEEecCC-------cceeEecCC--CC-cchhhhhccc-----C--ceeeeeccccceeeccc---cCceEEee
Confidence 9999999987322 224333333 33 2233444432 2 233445666 6655333 23466666
Q ss_pred cCCCeE
Q 004816 329 ESNNEV 334 (729)
Q Consensus 329 ~~~g~~ 334 (729)
..+++.
T Consensus 1225 ~~~~~~ 1230 (1289)
T KOG1214|consen 1225 KHSGQF 1230 (1289)
T ss_pred cccccc
Confidence 655543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=13 Score=42.10 Aligned_cols=215 Identities=9% Similarity=0.024 Sum_probs=109.7
Q ss_pred ECCEEEEEECCC------CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 153 FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 153 ~~~~i~~~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
-++.|+...+.. ..++.+|+.+ ..-..+.+-+ ..|.......-+|+ |+.+....... ....+.++
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~W~~~~~m~---~~R~~~~~~~~~g~-IYviGG~~~~~---~~~sve~Y 372 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIEN--KIHVELPPMI---KNRCRFSLAVIDDT-IYAIGGQNGTN---VERTIECY 372 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCC--CeEeeCCCCc---chhhceeEEEECCE-EEEECCcCCCC---CCceEEEE
Confidence 456665554422 2589999887 5555555431 11212122233554 55443322111 13468888
Q ss_pred EcCCCceEEeeeCCCeeeee-eeCCCCCeEEEEEecCCCCCC----------------CCcEEEEEEecCCCCeeeeEEe
Q 004816 227 ALNGQNIQVLVSGSDFYAFP-RMDPRGERMAWIEWHHPNMPW----------------DKAELWVGYISENGDVYKRVCV 289 (729)
Q Consensus 227 dl~~g~~~~lt~~~~~~~~~-~~SPDG~~la~~~~~~~~~~~----------------~~~~l~~~d~~~~g~~~~~~~~ 289 (729)
|+.+.+-+.+.+-+...... .-.-+| +|+.+........+ ....+.++|.. +.+... .
T Consensus 373 dp~~~~W~~~~~mp~~r~~~~~~~~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~-td~W~~---v 447 (557)
T PHA02713 373 TMGDDKWKMLPDMPIALSSYGMCVLDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV-NNIWET---L 447 (557)
T ss_pred ECCCCeEEECCCCCcccccccEEEECC-EEEEEeCCCcccccccccccccccccccccccceEEEECCC-CCeEee---c
Confidence 99887766665422111111 112244 57666532211000 12458888877 554322 2
Q ss_pred cCCCCCccccccCceeCCCCcEEEEEecCC--Cc-eEEEEEEcCC-CeEEEeeccCccccCCcccccCcceeeeeecCCC
Q 004816 290 AGFDPTIVESPTEPKWSSKGELFFVTDRKN--GF-WNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEK 365 (729)
Q Consensus 290 ~~~~~~~~~~~~~~~wspDG~l~~~~~~~~--g~-~~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~ 365 (729)
+..... .. ....-.-+|+||....... +. ..+.++|+++ ++++.+.+....... ..... -+
T Consensus 448 ~~m~~~--r~-~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-------~~~~~-----~~ 512 (557)
T PHA02713 448 PNFWTG--TI-RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-------LHTIL-----HD 512 (557)
T ss_pred CCCCcc--cc-cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-------ceeEE-----EC
Confidence 222100 11 1122344677777654311 11 3478999998 788887744321111 11222 24
Q ss_pred CEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 366 NLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 366 ~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
+.||+....+|...+..+|+.+.+++.+...
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred CEEEEEeeecceeehhhcCcccccccchhhh
Confidence 5788877777766778888888888877653
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.9 Score=44.65 Aligned_cols=142 Identities=14% Similarity=0.069 Sum_probs=77.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEE-------
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS------- 160 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------- 160 (729)
-++=++++.. ++.+|.-+. =.-|+..+.. ++....+++...+..-++. ....... .+.++|+
T Consensus 115 GRPLGl~f~~~ggdL~VaDA------YlGL~~V~p~-g~~a~~l~~~~~G~~~kf~--N~ldI~~-~g~vyFTDSSsk~~ 184 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADA------YLGLLKVGPE-GGLAELLADEAEGKPFKFL--NDLDIDP-EGVVYFTDSSSKYD 184 (376)
T ss_pred CCcceEEeccCCCeEEEEec------ceeeEEECCC-CCcceeccccccCeeeeec--CceeEcC-CCeEEEeccccccc
Confidence 3566888888 777777552 2236666666 2344555443322221110 0000111 1122222
Q ss_pred ----------ECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 161 ----------NYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 161 ----------~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
....|+|+.+|..+ +..+.|..+ -...+..++|||+++++++.... .+|-++=+.+
T Consensus 185 ~rd~~~a~l~g~~~GRl~~YD~~t--K~~~VLld~----L~F~NGlaLS~d~sfvl~~Et~~--------~ri~rywi~g 250 (376)
T KOG1520|consen 185 RRDFVFAALEGDPTGRLFRYDPST--KVTKVLLDG----LYFPNGLALSPDGSFVLVAETTT--------ARIKRYWIKG 250 (376)
T ss_pred hhheEEeeecCCCccceEEecCcc--cchhhhhhc----ccccccccCCCCCCEEEEEeecc--------ceeeeeEecC
Confidence 22357999999988 777777765 22337788999999988875432 3444444444
Q ss_pred ---CceEEeee-CCCeeeeeeeCCCCCe
Q 004816 231 ---QNIQVLVS-GSDFYAFPRMDPRGER 254 (729)
Q Consensus 231 ---g~~~~lt~-~~~~~~~~~~SPDG~~ 254 (729)
|+...+++ -+++--+.+-+++|.+
T Consensus 251 ~k~gt~EvFa~~LPG~PDNIR~~~~G~f 278 (376)
T KOG1520|consen 251 PKAGTSEVFAEGLPGYPDNIRRDSTGHF 278 (376)
T ss_pred CccCchhhHhhcCCCCCcceeECCCCCE
Confidence 33344444 2344344566777763
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.45 E-value=25 Score=40.54 Aligned_cols=239 Identities=11% Similarity=0.090 Sum_probs=129.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCC-CCcccccccccCCceEEEECCEEEEEECCCC-
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-EYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ- 165 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 165 (729)
.++.++.+.| .-|+.-.- ..|.++||-+.-+ .-..-+++ +..+| ...+.++.-+|++..+.
T Consensus 10 sRvKglsFHP~rPwILtsl----HsG~IQlWDYRM~---tli~rFdeHdGpVR---------gv~FH~~qplFVSGGDDy 73 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSL----HSGVIQLWDYRMG---TLIDRFDEHDGPVR---------GVDFHPTQPLFVSGGDDY 73 (1202)
T ss_pred ccccceecCCCCCEEEEee----cCceeeeehhhhh---hHHhhhhccCCccc---------eeeecCCCCeEEecCCcc
Confidence 4677899998 66665433 4788999876433 11111111 11222 23444555566665544
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC-eee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD-FYA 244 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~-~~~ 244 (729)
.|-+|+.+.. .-.-.|... -.-+....|.+.=-+|+-.+++ +.|.+++-.+++...+..|.. +..
T Consensus 74 kIkVWnYk~r-rclftL~GH----lDYVRt~~FHheyPWIlSASDD---------QTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 74 KIKVWNYKTR-RCLFTLLGH----LDYVRTVFFHHEYPWILSASDD---------QTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred EEEEEecccc-eehhhhccc----cceeEEeeccCCCceEEEccCC---------CeEEEEeccCCceEEEEecCceEEE
Confidence 6777776641 112233433 1233555677777777655554 468888988877665544544 444
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-------CC-------------------CeeeeEEecCCCCCccc
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-------NG-------------------DVYKRVCVAGFDPTIVE 298 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-------~g-------------------~~~~~~~~~~~~~~~~~ 298 (729)
-.+|.|....|+-.+.|. .|.++|+.+ .| ...-..++.+++ .
T Consensus 140 cAqFhptEDlIVSaSLDQ--------TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD----R 207 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVSASLDQ--------TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD----R 207 (1202)
T ss_pred eeccCCccceEEEecccc--------eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc----c
Confidence 568999888777665332 355666541 01 000122445555 5
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee--ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
++...+|.|---|++...+ .-+-.||+++. +..+..=+ .... ..+.+.|- ..+-++.+..+|+
T Consensus 208 GVNwaAfhpTlpliVSG~D-DRqVKlWrmne-tKaWEvDtcrgH~n---------nVssvlfh----p~q~lIlSnsEDk 272 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGAD-DRQVKLWRMNE-TKAWEVDTCRGHYN---------NVSSVLFH----PHQDLILSNSEDK 272 (1202)
T ss_pred ccceEEecCCcceEEecCC-cceeeEEEecc-ccceeehhhhcccC---------CcceEEec----CccceeEecCCCc
Confidence 5666667664335555444 44567888864 44333322 1111 12234443 3334666776777
Q ss_pred eEEEEEEE
Q 004816 377 RSYLGILD 384 (729)
Q Consensus 377 ~~~ly~~d 384 (729)
..++|-++
T Consensus 273 sirVwDm~ 280 (1202)
T KOG0292|consen 273 SIRVWDMT 280 (1202)
T ss_pred cEEEEecc
Confidence 77777554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=92.34 E-value=5.8 Score=44.34 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=58.6
Q ss_pred CCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC--------Cee-------------eeeeeCCCCCeEEEEE
Q 004816 201 RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS--------DFY-------------AFPRMDPRGERMAWIE 259 (729)
Q Consensus 201 dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~--------~~~-------------~~~~~SPDG~~la~~~ 259 (729)
||++ +|+-+.. +.+|-+++++.=+..+++.-+ .+. ...=++|||+.|.-.+
T Consensus 140 dGr~-~findk~-------n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ 211 (635)
T PRK02888 140 DGRY-LFINDKA-------NTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPK 211 (635)
T ss_pred ceeE-EEEecCC-------CcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeeccc
Confidence 7886 5665543 367889998876555554311 000 0112577888663221
Q ss_pred ecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec-CCCceEEEEEEcCC
Q 004816 260 WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR-KNGFWNLHKWIESN 331 (729)
Q Consensus 260 ~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~-~~g~~~l~~~d~~~ 331 (729)
. ....+.++|.+ +-++.+.....+ ......+++||+.+|++.. ......+..++...
T Consensus 212 -e------y~~~vSvID~e-tmeV~~qV~Vdg-------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e 269 (635)
T PRK02888 212 -K------YRSLFTAVDAE-TMEVAWQVMVDG-------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE 269 (635)
T ss_pred -c------eeEEEEEEECc-cceEEEEEEeCC-------CcccceECCCCCEEEEeccCcccCcceeeecccc
Confidence 1 23447777877 444433333322 2357789999995555542 12334566665543
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=92.20 E-value=22 Score=39.36 Aligned_cols=208 Identities=9% Similarity=-0.059 Sum_probs=96.0
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCc-eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC---C-
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPL-VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG---S- 240 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~-~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~---~- 240 (729)
.+|++|+.+ .+-.++......+. .+....... -+..|+.+-..... .....+|++|+.+.+-+++... +
T Consensus 194 ~v~~yD~~~--~~W~~~~~~g~~P~~~~~~~~~v~-~~~~lYvfGG~~~~---~~~ndv~~yD~~t~~W~~l~~~~~~P~ 267 (470)
T PLN02193 194 HLYVFDLET--RTWSISPATGDVPHLSCLGVRMVS-IGSTLYVFGGRDAS---RQYNGFYSFDTTTNEWKLLTPVEEGPT 267 (470)
T ss_pred cEEEEECCC--CEEEeCCCCCCCCCCcccceEEEE-ECCEEEEECCCCCC---CCCccEEEEECCCCEEEEcCcCCCCCC
Confidence 599999986 55444432210011 111111112 23444333221111 1236799999998877776542 1
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecC-C
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK-N 319 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~-~ 319 (729)
.....-.. ..+.+|++..-..... ...+++++|+. +.+............. .. ......-++++++..-.. .
T Consensus 268 ~R~~h~~~-~~~~~iYv~GG~~~~~--~~~~~~~yd~~-t~~W~~~~~~~~~~~~--R~-~~~~~~~~gkiyviGG~~g~ 340 (470)
T PLN02193 268 PRSFHSMA-ADEENVYVFGGVSATA--RLKTLDSYNIV-DKKWFHCSTPGDSFSI--RG-GAGLEVVQGKVWVVYGFNGC 340 (470)
T ss_pred CccceEEE-EECCEEEEECCCCCCC--CcceEEEEECC-CCEEEeCCCCCCCCCC--CC-CcEEEEECCcEEEEECCCCC
Confidence 11111112 2345566554221111 23568899987 5544221110000000 11 111223466755543321 1
Q ss_pred CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC----------C--eEEEEEEECCC
Q 004816 320 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN----------G--RSYLGILDDFG 387 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~----------g--~~~ly~~d~~~ 387 (729)
....++++|+++.+++.+.... ....+... ...... ++ .||+..-.. + ...+|.+|+.+
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g-~~P~~R~~---~~~~~~----~~-~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFG-VRPSERSV---FASAAV----GK-HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred ccCceEEEECCCCEEEEeccCC-CCCCCcce---eEEEEE----CC-EEEEECCccCCccccccCccceeccEEEEEcCc
Confidence 2367999999999998875321 00011111 111222 33 344333211 1 13589999999
Q ss_pred CceEeecc
Q 004816 388 HSLSLLDI 395 (729)
Q Consensus 388 g~~~~lt~ 395 (729)
.+++.+..
T Consensus 412 ~~W~~~~~ 419 (470)
T PLN02193 412 LQWERLDK 419 (470)
T ss_pred CEEEEccc
Confidence 99988863
|
|
| >KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.2 Score=43.72 Aligned_cols=99 Identities=17% Similarity=0.027 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
.| +|++||-........+....+++.+. |..|.+++.-- | -..+|.... .+.+..+-+.+..... -+
T Consensus 24 ~P-~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig~-g-~~~s~l~pl--------~~Qv~~~ce~v~~m~~-ls 91 (296)
T KOG2541|consen 24 VP-VIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIGD-G-IKDSSLMPL--------WEQVDVACEKVKQMPE-LS 91 (296)
T ss_pred CC-EEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEecC-C-cchhhhccH--------HHHHHHHHHHHhcchh-cc
Confidence 45 56679976555555566677777775 99999999731 1 113333222 2334444444443322 25
Q ss_pred CcEEEEEcChHHHHHHHHHh--CCCcceEEEEec
Q 004816 571 KRLCITGGSAGGYTTLAALA--FRDTFKAGASLY 602 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~ 602 (729)
+-+.++|.|.||.++-.++. ....++-.|+.+
T Consensus 92 qGynivg~SQGglv~Raliq~cd~ppV~n~ISL~ 125 (296)
T KOG2541|consen 92 QGYNIVGYSQGGLVARALIQFCDNPPVKNFISLG 125 (296)
T ss_pred CceEEEEEccccHHHHHHHHhCCCCCcceeEecc
Confidence 67899999999999877765 223455555543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.15 E-value=15 Score=38.71 Aligned_cols=158 Identities=9% Similarity=0.046 Sum_probs=85.5
Q ss_pred eeeecceecCCCC-EEEEEEeccCCCCCCcceEEEEEEcCCCc-----eEEeeeCCCeeeeeeeCCCC-CeEEEEEecCC
Q 004816 191 VSYADGIFDPRFN-RYVTVREDRRQDALNSTTEIVAIALNGQN-----IQVLVSGSDFYAFPRMDPRG-ERMAWIEWHHP 263 (729)
Q Consensus 191 ~~~~~~~~SPdG~-~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-----~~~lt~~~~~~~~~~~SPDG-~~la~~~~~~~ 263 (729)
.|+....|.|--. .++.+-+.. ++|-++++.+.+ ....+......++..|+|-. .+|+-.+.
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~--------G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy--- 255 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKG--------GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY--- 255 (498)
T ss_pred cceEEEEecccCcceEEEEccCC--------CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc---
Confidence 3567778999655 777775544 567777885322 22234445567788899944 44444442
Q ss_pred CCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCc
Q 004816 264 NMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA 342 (729)
Q Consensus 264 ~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~ 342 (729)
...|...|++ ++....+..+.... ..+....++.+.+ ++|..+. |..+++-....+.+...+.-...
T Consensus 256 -----DGtiR~~D~~-~~i~e~v~s~~~d~----~~fs~~d~~~e~~~vl~~~~~--G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 256 -----DGTIRLQDFE-GNISEEVLSLDTDN----IWFSSLDFSAESRSVLFGDNV--GNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred -----Cceeeeeeec-chhhHHHhhcCccc----eeeeeccccCCCccEEEeecc--cceEEEEeecCCccchhhhhhhc
Confidence 2348889998 45432222222122 5566778888877 7777766 44455433333322233322221
Q ss_pred cccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 343 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 343 ~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
.+..-...| -..+++.++.-++...||-+
T Consensus 324 KI~sv~~NP------------~~p~~laT~s~D~T~kIWD~ 352 (498)
T KOG4328|consen 324 KITSVALNP------------VCPWFLATASLDQTAKIWDL 352 (498)
T ss_pred ccceeecCC------------CCchheeecccCcceeeeeh
Confidence 222222221 23356666666777777744
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.08 E-value=18 Score=38.18 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=51.7
Q ss_pred eEEEEEEcCCCeEEEeeccC-------ccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec
Q 004816 322 WNLHKWIESNNEVLAIYSLD-------AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~~~~-------~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
..|++++....++.-+.... .....+.|.. .+..+ .+.-++.+...+|..+||.+...-.+++.|.
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wit---sla~i----~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~ 420 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWIT---SLAVI----PGSDLLASGSWSGCVRLWKIEDGLRAINLLY 420 (479)
T ss_pred ceEEEeeecccCceeEeeccccccCCcccccccccee---eeEec----ccCceEEecCCCCceEEEEecCCccccceee
Confidence 35666666555443322111 1223344764 45555 4555777888899999999876555565554
Q ss_pred cC--CcceEEe--eeeCCEEEEEEeCCCCCceEEE
Q 004816 395 IP--FTDIDNI--TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 395 ~~--~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
.- ..-|..+ +.+++.+++-.+.....++++.
T Consensus 421 ~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 421 SLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred ecccccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 32 2234444 4445545554444444444433
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=91.78 E-value=23 Score=39.74 Aligned_cols=206 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecC-------------CCCEEEEEEeccCCCCCCcce
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-------------RFNRYVTVREDRRQDALNSTT 221 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SP-------------dG~~l~~~~~~~~~~~~~~~~ 221 (729)
+..+|.....+.|+.+|.++| ...-+.... ......+ .+.+|++...+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TG-k~lW~~~~~--------~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg--------- 130 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTG-KELWKYDPK--------LPDDVIPVMCCDVVNRGVALYDGKVFFGTLDA--------- 130 (527)
T ss_pred CCEEEEECCCCcEEEEECCCC-ceeeEecCC--------CCcccccccccccccccceEECCEEEEEcCCC---------
Q ss_pred EEEEEEcCCCceEEeee------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCC
Q 004816 222 EIVAIALNGQNIQVLVS------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 295 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt~------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~ 295 (729)
.|+.+|.++|++.=-.. +......|... +|+-++-.+..+.+ ....|+.+|++ +|+..+.......+..
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~---~~G~v~AlD~~-TG~~lW~~~~~p~~~~ 205 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFG---VRGYVTAYDAK-TGKLVWRRYTVPGDMG 205 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccC---CCcEEEEEECC-CCceeEeccCcCCCcc
Q ss_pred -----------------ccccccCc---------eeCCCCc-EEEEE--------ecCCCce----EEEEEEcCCCeEE-
Q 004816 296 -----------------IVESPTEP---------KWSSKGE-LFFVT--------DRKNGFW----NLHKWIESNNEVL- 335 (729)
Q Consensus 296 -----------------~~~~~~~~---------~wspDG~-l~~~~--------~~~~g~~----~l~~~d~~~g~~~- 335 (729)
|....... .+.++-. +|+-. ....|.. .|..+|++||+.+
T Consensus 206 ~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W 285 (527)
T TIGR03075 206 YLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKW 285 (527)
T ss_pred cccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEE
Q ss_pred --EeeccCccccCCcccccCcceeeeeecCCCC--EEEEEEEECCeEEEEEEECCCCce
Q 004816 336 --AIYSLDAEFSRPLWVFGINSYEIIQSHGEKN--LIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 336 --~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~--~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
+.++.+....+....+..-++.. +++ .++....++| .+|++|..+|+.
T Consensus 286 ~~Q~~~~D~wD~d~~~~p~l~d~~~-----~G~~~~~v~~~~K~G--~~~vlDr~tG~~ 337 (527)
T TIGR03075 286 HYQTTPHDEWDYDGVNEMILFDLKK-----DGKPRKLLAHADRNG--FFYVLDRTNGKL 337 (527)
T ss_pred eeeCCCCCCccccCCCCcEEEEecc-----CCcEEEEEEEeCCCc--eEEEEECCCCce
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.19 Score=52.95 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHH
Q 004816 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 589 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~ 589 (729)
..-+.+++++|..++.-+.++|.|.|.|+||+-++.-+
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 45588999999999777889999999999999987655
|
|
| >COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.44 Score=51.08 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=63.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-------------hh----hHHHhhCCcEEEEecCCCCCC
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-------------LS----IQYWTSRGWAFVDVNYGGSTG 534 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-------------~~----~~~la~~G~~v~~~d~rGs~g 534 (729)
...|.+.+.+ ...++|+++++-|||++......- +. -..|.+. -.++.+|.+-.+|
T Consensus 87 ~ffy~fe~~n------dp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTG 159 (498)
T COG2939 87 FFFYTFESPN------DPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTG 159 (498)
T ss_pred EEEEEecCCC------CCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccC
Confidence 4556666544 246789999999999865443211 00 0112222 3578888776677
Q ss_pred CchhHHHhhccCCCcccHHHHHHHHHHHHh----CCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 535 YGREFRERLLGRWGIVDVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 535 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
|.++.......+.. ..-+|+..+.+.+.+ .... ..+..|+|.||||+-+-.+|.
T Consensus 160 fS~a~~~e~~~d~~-~~~~D~~~~~~~f~~~fp~~~r~-~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 160 FSRALGDEKKKDFE-GAGKDVYSFLRLFFDKFPHYARL-LSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred cccccccccccchh-ccchhHHHHHHHHHHHHHHHhhh-cCceeEeeccccchhhHHHHH
Confidence 77652222222211 124566665554443 2221 258999999999988877764
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.34 E-value=3.5 Score=44.78 Aligned_cols=148 Identities=11% Similarity=0.085 Sum_probs=71.5
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCC
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g 320 (729)
..+....|.-+|.+|+.+..+. .+..+++..+. .... ...+.... +.+..+.|.|---.+|++..
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~-----~~~~VliHQLS-K~~s--Q~PF~ksk----G~vq~v~FHPs~p~lfVaTq--- 586 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDS-----GNKSVLIHQLS-KRKS--QSPFRKSK----GLVQRVKFHPSKPYLFVATQ--- 586 (733)
T ss_pred CccceeeeecCCceEEEeccCC-----CcceEEEEecc-cccc--cCchhhcC----CceeEEEecCCCceEEEEec---
Confidence 3456778999999998776433 24568888887 2221 12222222 44556778886554444332
Q ss_pred ceEEEEEEcCCCe-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcc
Q 004816 321 FWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD 399 (729)
Q Consensus 321 ~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~ 399 (729)
..+-++|+..++ ++.|.+. ..|.. .+...+ .|..|++.+. ++..-.|-+|+.++-.+.|......
T Consensus 587 -~~vRiYdL~kqelvKkL~tg------~kwiS---~msihp---~GDnli~gs~-d~k~~WfDldlsskPyk~lr~H~~a 652 (733)
T KOG0650|consen 587 -RSVRIYDLSKQELVKKLLTG------SKWIS---SMSIHP---NGDNLILGSY-DKKMCWFDLDLSSKPYKTLRLHEKA 652 (733)
T ss_pred -cceEEEehhHHHHHHHHhcC------Ceeee---eeeecC---CCCeEEEecC-CCeeEEEEcccCcchhHHhhhhhhh
Confidence 235556765432 2223222 23321 222221 4555655443 3333333444444455555444444
Q ss_pred eEEeeeeCCEEEEEEeCC
Q 004816 400 IDNITLGNDCLFVEGASG 417 (729)
Q Consensus 400 v~~~~~~~~~~~~~~~~~ 417 (729)
+.++......=++.++++
T Consensus 653 vr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 653 VRSVAFHKRYPLFASGSD 670 (733)
T ss_pred hhhhhhccccceeeeecC
Confidence 444433333333333333
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=91.22 E-value=22 Score=37.51 Aligned_cols=94 Identities=10% Similarity=0.045 Sum_probs=48.2
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceee---ecceecCCCCEE--EEEEeccCCCCCCcceEEEEEEcCCC
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSY---ADGIFDPRFNRY--VTVREDRRQDALNSTTEIVAIALNGQ 231 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~---~~~~~SPdG~~l--~~~~~~~~~~~~~~~~~l~~~dl~~g 231 (729)
+++.....+.|+++|+++ +..+.+..+. ...+ .++.+ +|+.+ +.+.++.... ..-.||.+|.+++
T Consensus 70 lIigTdK~~GL~VYdL~G--k~lq~~~~Gr---~NNVDvrygf~l--~g~~vDlavas~R~~g~---n~l~~f~id~~~g 139 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDG--KELQSLPVGR---PNNVDVRYGFPL--NGKTVDLAVASDRSDGR---NSLRLFRIDPDTG 139 (381)
T ss_dssp EEEEEETTTEEEEEETTS---EEEEE-SS----EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT----EEEEEEEETTTT
T ss_pred eEEEEeCCCCEEEEcCCC--cEEEeecCCC---cceeeeecceec--CCceEEEEEEecCcCCC---CeEEEEEecCCCC
Confidence 445555567899999997 7777775441 1111 22333 67764 4444432111 0246899998878
Q ss_pred ceEEeeeCC-------Ceeeeeee--CC-CCCeEEEEEe
Q 004816 232 NIQVLVSGS-------DFYAFPRM--DP-RGERMAWIEW 260 (729)
Q Consensus 232 ~~~~lt~~~-------~~~~~~~~--SP-DG~~la~~~~ 260 (729)
..+.++... ....+.|. +| +|+.-+|+..
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~ 178 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG 178 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE
T ss_pred cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec
Confidence 777665321 11234454 54 6777777764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PLN02633 palmitoyl protein thioesterase family protein | Back alignment and domain information |
|---|
Probab=91.01 E-value=2 Score=43.54 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
...| ||+.||-+............+.+.+. |.-+..+....+ .-.+| -...-+.+..+.+.|.+-+..
T Consensus 24 ~~~P-~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~ig~~--~~~s~--------~~~~~~Qve~vce~l~~~~~l 92 (314)
T PLN02633 24 VSVP-FIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEIGNG--VGDSW--------LMPLTQQAEIACEKVKQMKEL 92 (314)
T ss_pred CCCC-eEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEECCC--ccccc--------eeCHHHHHHHHHHHHhhchhh
Confidence 3456 55569976655555555566666553 777777765321 11111 112234445555555553333
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEEecc
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYG 603 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~--~~~a~v~~~~ 603 (729)
.+-+.++|+|.||.++=.++. .++ .++-.|++.+
T Consensus 93 -~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 93 -SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred -hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 246999999999999877776 544 4777776653
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=90.94 E-value=11 Score=37.38 Aligned_cols=152 Identities=11% Similarity=0.012 Sum_probs=79.5
Q ss_pred ECCEEEEEECCCC--cEEEEeCCCCCCCCeecCCCCCCCceeee-cceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 153 FGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYA-DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 153 ~~~~i~~~~~~~~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~-~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
.++.++-+....| .|..+|+++ ++..+-..-+ ..-++ ..+. -|.+|+-..... ...+++|.+
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~t--g~~~~~~~l~---~~~FgEGit~--~~d~l~qLTWk~--------~~~f~yd~~ 118 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLET--GKVLQSVPLP---PRYFGEGITI--LGDKLYQLTWKE--------GTGFVYDPN 118 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTT--SSEEEEEE-T---TT--EEEEEE--ETTEEEEEESSS--------SEEEEEETT
T ss_pred CCCEEEEeCCCCCcEEEEEEECCC--CcEEEEEECC---ccccceeEEE--ECCEEEEEEecC--------CeEEEEccc
Confidence 4556666666555 899999998 6654333221 11122 2222 255666665543 578999998
Q ss_pred CCce-EEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCee-eeEEecCCCCCccccccCceeC
Q 004816 230 GQNI-QVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 230 ~g~~-~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ws 306 (729)
+-+. .++.- +.++ + ...||+.|+... ....|+..|.+ +-+.. .+.+..+..+ ...+....|-
T Consensus 119 tl~~~~~~~y~~EGW--G--Lt~dg~~Li~SD--------GS~~L~~~dP~-~f~~~~~i~V~~~g~p--v~~LNELE~i 183 (264)
T PF05096_consen 119 TLKKIGTFPYPGEGW--G--LTSDGKRLIMSD--------GSSRLYFLDPE-TFKEVRTIQVTDNGRP--VSNLNELEYI 183 (264)
T ss_dssp TTEEEEEEE-SSS----E--EEECSSCEEEE---------SSSEEEEE-TT-T-SEEEEEE-EETTEE-----EEEEEEE
T ss_pred cceEEEEEecCCcce--E--EEcCCCEEEEEC--------CccceEEECCc-ccceEEEEEEEECCEE--CCCcEeEEEE
Confidence 7543 23321 2221 2 237888876544 23568988876 44332 2222222110 0234456674
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
||.|+...-. ...|.++|+++|++....
T Consensus 184 -~G~IyANVW~---td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 184 -NGKIYANVWQ---TDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp -TTEEEEEETT---SSEEEEEETTT-BEEEEE
T ss_pred -cCEEEEEeCC---CCeEEEEeCCCCeEEEEE
Confidence 6765543322 467999999999988765
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.73 E-value=2 Score=43.00 Aligned_cols=99 Identities=11% Similarity=0.185 Sum_probs=63.1
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC-eeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCC
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 320 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g 320 (729)
..--+|++|+..||... ++.+|.++... +.. ......+...+ ..+..+.|+|.+. |+-.+++ ++
T Consensus 13 itchAwn~drt~iAv~~--------~~~evhiy~~~-~~~~w~~~htls~Hd----~~vtgvdWap~snrIvtcs~d-rn 78 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSP--------NNHEVHIYSML-GADLWEPAHTLSEHD----KIVTGVDWAPKSNRIVTCSHD-RN 78 (361)
T ss_pred eeeeeecCCCceEEecc--------CCceEEEEEec-CCCCceeceehhhhC----cceeEEeecCCCCceeEccCC-CC
Confidence 34458999999999766 34568888776 444 44556667776 7778899999986 7766665 32
Q ss_pred ceEEEEEEc-CCCeEE---EeeccCccccCCcccccCcceee
Q 004816 321 FWNLHKWIE-SNNEVL---AIYSLDAEFSRPLWVFGINSYEI 358 (729)
Q Consensus 321 ~~~l~~~d~-~~g~~~---~l~~~~~~~~~~~w~~~~~~~~~ 358 (729)
-|++.. ++++.+ .|...+.....-.|+|..+-|..
T Consensus 79 ---ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAV 117 (361)
T KOG1523|consen 79 ---AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAV 117 (361)
T ss_pred ---ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEe
Confidence 233333 566544 23344555556788874444433
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=90.73 E-value=27 Score=38.09 Aligned_cols=103 Identities=12% Similarity=0.104 Sum_probs=49.7
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCC----CCceeeecceecCCC-----CEEEEEEeccCCCCC--CcceEEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG----EPLVSYADGIFDPRF-----NRYVTVREDRRQDAL--NSTTEIV 224 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~----~~~~~~~~~~~SPdG-----~~l~~~~~~~~~~~~--~~~~~l~ 224 (729)
.++++....++|++++..+ +..+.+...++ .......+++++||- +..+|+......... .....|.
T Consensus 42 ~llVtER~~G~I~~v~~~~--~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~ 119 (454)
T TIGR03606 42 QLWVTERATGKILRVNPET--GEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIV 119 (454)
T ss_pred eEEEEEecCCEEEEEeCCC--CceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEE
Confidence 4554443358899998765 43333221110 002334677888874 223444322111000 0135787
Q ss_pred EEEcCCC-----ceEEeeeCC-----CeeeeeeeCCCCCeEEEEEec
Q 004816 225 AIALNGQ-----NIQVLVSGS-----DFYAFPRMDPRGERMAWIEWH 261 (729)
Q Consensus 225 ~~dl~~g-----~~~~lt~~~-----~~~~~~~~SPDG~~la~~~~~ 261 (729)
++.++.. ..+.|..+. ..-....|.|||+ |++..-+
T Consensus 120 R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD 165 (454)
T TIGR03606 120 RYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGE 165 (454)
T ss_pred EEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECC
Confidence 7776521 223443221 1223568999997 6655433
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.63 E-value=22 Score=36.40 Aligned_cols=234 Identities=9% Similarity=0.022 Sum_probs=0.0
Q ss_pred CceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 147 ~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
..+.++++. .-+.+...++.+-+||+.+| .-...||.. -..+.+.++|+---+++...++. ++-.
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGh----i~~vr~vavS~rHpYlFs~gedk---------~VKC 219 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGH----IETVRGVAVSKRHPYLFSAGEDK---------QVKC 219 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecch----hheeeeeeecccCceEEEecCCC---------eeEE
Q ss_pred EEcCCCceEEeeeCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCce
Q 004816 226 IALNGQNIQVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 304 (729)
Q Consensus 226 ~dl~~g~~~~lt~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (729)
+|++..++.+-..|. .........|--+.|+-.+ ....+.++|+. +... +..+.+.. ..+..+.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g--------rDst~RvWDiR-tr~~--V~~l~GH~----~~V~~V~ 284 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG--------RDSTIRVWDIR-TRAS--VHVLSGHT----NPVASVM 284 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecC--------CcceEEEeeec-ccce--EEEecCCC----CcceeEE
Q ss_pred eCC-CCcEEEEEecCCCceEEEEEEcCCCe-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEE
Q 004816 305 WSS-KGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 382 (729)
Q Consensus 305 wsp-DG~l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~ 382 (729)
..| |++++-.+.+ ..+..+|+..|+ ...++.....+....-.| +...|.+.......-|.
T Consensus 285 ~~~~dpqvit~S~D----~tvrlWDl~agkt~~tlt~hkksvral~lhP--------------~e~~fASas~dnik~w~ 346 (460)
T KOG0285|consen 285 CQPTDPQVITGSHD----STVRLWDLRAGKTMITLTHHKKSVRALCLHP--------------KENLFASASPDNIKQWK 346 (460)
T ss_pred eecCCCceEEecCC----ceEEEeeeccCceeEeeecccceeeEEecCC--------------chhhhhccCCccceecc
Q ss_pred EECCCCceEeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 383 LDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 383 ~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
+ +++....-+......+..+....+.+++..+... .++..|.++|
T Consensus 347 ~-p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng---~~~fwdwksg 391 (460)
T KOG0285|consen 347 L-PEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG---SIMFWDWKSG 391 (460)
T ss_pred C-CccchhhccccccceeeeeeeccCceEEEcCCce---EEEEEecCcC
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.46 Score=42.60 Aligned_cols=52 Identities=21% Similarity=0.075 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh----CC----CcceEEEEecccc
Q 004816 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FR----DTFKAGASLYGVA 605 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~~----~~~~a~v~~~~~~ 605 (729)
.+.+...++.+.++.. ..+|.+.|||+||.+|..++. +. ..+++.....|..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 3455566666655543 479999999999999977764 22 4456555555543
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=90.44 E-value=7.5 Score=38.82 Aligned_cols=153 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCC--------------CCCCCCcEEEEEEecCCCC
Q 004816 217 LNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHP--------------NMPWDKAELWVGYISENGD 282 (729)
Q Consensus 217 ~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~--------------~~~~~~~~l~~~d~~~~g~ 282 (729)
......+|.+.+-+..++ ++.+.++...|+-| .|+|-.|-+. .+.+.-+.|+.+|++ +++
T Consensus 16 ~~d~~~iY~felvG~~P~---SGGDTYNAV~~vDd--~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e-~~~ 89 (339)
T PF09910_consen 16 RDDSEKIYRFELVGPPPT---SGGDTYNAVEWVDD--FIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTE-NDS 89 (339)
T ss_pred cCCceEEEEeeeccCCCC---CCCccceeeeeecc--eEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcC-CCe
Q ss_pred ee--eeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeee
Q 004816 283 VY--KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEII 359 (729)
Q Consensus 283 ~~--~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l 359 (729)
++ +..-..... +|..-++.+-..|=.. |++.+.+..-..-||.+|..+|+.+.|.+.. ..+.-.+.
T Consensus 90 VrLLWkesih~~~-~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~p----------s~KG~~~~ 158 (339)
T PF09910_consen 90 VRLLWKESIHDKT-KWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNP----------SLKGTLVH 158 (339)
T ss_pred EEEEEecccCCcc-ccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCC----------CcCceEee
Q ss_pred eecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 360 QSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 360 ~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
|...+-......|...|..+|+.++++
T Consensus 159 ----D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 159 ----DYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred ----eeEEEeccccccCCceEEEEEccCCeE
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.54 Score=44.84 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 551 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
.+.|+.+|.++.+++.. +...++|.|||.|+.+..+++.
T Consensus 76 ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~ 114 (207)
T PF11288_consen 76 AYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLK 114 (207)
T ss_pred hHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHH
Confidence 48999999998877743 3468999999999999999986
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.92 E-value=23 Score=35.49 Aligned_cols=63 Identities=6% Similarity=-0.040 Sum_probs=39.4
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCC--eEEEEEecCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGE--RMAWIEWHHP 263 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~--~la~~~~~~~ 263 (729)
.+.+.+||-||..+ |+..-+ .++-++||.++++.++....+......|=+-.. -|+-.+||..
T Consensus 74 PvL~v~WsddgskV-f~g~~D--------k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKT 138 (347)
T KOG0647|consen 74 PVLDVCWSDDGSKV-FSGGCD--------KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKT 138 (347)
T ss_pred CeEEEEEccCCceE-EeeccC--------CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccc
Confidence 35788999999875 444332 357778999999988876555444455543333 3343444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.55 E-value=17 Score=43.29 Aligned_cols=51 Identities=2% Similarity=-0.115 Sum_probs=34.7
Q ss_pred ECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEe
Q 004816 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE 210 (729)
Q Consensus 153 ~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~ 210 (729)
++..|.+.. ..|+|.+.|+.+ .....+... ...+...+||||++.++.+..
T Consensus 79 d~~~i~v~~-~~G~iilvd~et--~~~eivg~v----d~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 79 DTNSICVIT-ALGDIILVDPET--LELEIVGNV----DNGISAASWSPDEELLALITG 129 (1265)
T ss_pred ccceEEEEe-cCCcEEEEcccc--cceeeeeec----cCceEEEeecCCCcEEEEEeC
Confidence 344554443 466788888887 665655555 344677789999999888765
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.52 E-value=10 Score=40.05 Aligned_cols=117 Identities=9% Similarity=0.009 Sum_probs=64.8
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 271 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 271 (729)
+....-+|+|.+|+.... ..+||++.+.+|+.-.+. ......+-..||-||+.|.-.+ .+ ..
T Consensus 84 v~al~s~n~G~~l~ag~i---------~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs-kD-------g~ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTI---------SGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS-KD-------GA 146 (476)
T ss_pred eeeeecCCCceEEEeecc---------cCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC-CC-------cc
Confidence 455667999998776633 257999999999753332 2223345568999999764333 22 22
Q ss_pred EEEEEec------CCCCeeeeEEecCCCCCccccccCceeCCCCc--EEEEEecCCCceEEEEEEcCCCe
Q 004816 272 LWVGYIS------ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNE 333 (729)
Q Consensus 272 l~~~d~~------~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~ 333 (729)
+.++.+. .++...+...+.++. .++..+...+.|. .+|++.. + ..+-++|+..|.
T Consensus 147 V~vW~l~~lv~a~~~~~~~p~~~f~~Ht----lsITDl~ig~Gg~~~rl~TaS~-D--~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 147 VLVWLLTDLVSADNDHSVKPLHIFSDHT----LSITDLQIGSGGTNARLYTASE-D--RTIKLWDLSLGV 209 (476)
T ss_pred EEEEEEEeecccccCCCccceeeeccCc----ceeEEEEecCCCccceEEEecC-C--ceEEEEEeccce
Confidence 4433332 123333445555554 4555555554432 3333332 1 345556776764
|
|
| >COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.76 Score=47.64 Aligned_cols=68 Identities=21% Similarity=0.087 Sum_probs=47.2
Q ss_pred hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 512 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 512 ~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
.....|.++|+-|+-+|-- +-|+. .+.......|+.+.+++...+. ...++.++|+|+|+-+.-.+..
T Consensus 278 ~v~~~l~~~gvpVvGvdsL------RYfW~---~rtPe~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~~~n 345 (456)
T COG3946 278 EVAEALQKQGVPVVGVDSL------RYFWS---ERTPEQIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPFAYN 345 (456)
T ss_pred HHHHHHHHCCCceeeeehh------hhhhc---cCCHHHHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHHHHH
Confidence 4677889999999999932 01111 1112234788999999887763 4689999999999976644444
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.92 E-value=17 Score=35.29 Aligned_cols=212 Identities=14% Similarity=0.030 Sum_probs=0.0
Q ss_pred CCEEEEEEeccCCCCCCcceEEEEEEcCC--CceEEeeeCCCeeeeeeeCC--CCCeEEEEEecCCCCCCCCcEEEEEEe
Q 004816 202 FNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQVLVSGSDFYAFPRMDP--RGERMAWIEWHHPNMPWDKAELWVGYI 277 (729)
Q Consensus 202 G~~l~~~~~~~~~~~~~~~~~l~~~dl~~--g~~~~lt~~~~~~~~~~~SP--DG~~la~~~~~~~~~~~~~~~l~~~d~ 277 (729)
|++|+..+.+. .-.||-+.-.+ .....|+...+......|.- -|..||-.+ ...++.+..-
T Consensus 23 gkrlATcsSD~-------tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs--------YDgkVIiWke 87 (299)
T KOG1332|consen 23 GKRLATCSSDG-------TVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS--------YDGKVIIWKE 87 (299)
T ss_pred cceeeeecCCc-------cEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee--------cCceEEEEec
Q ss_pred cCCCCeeeeEEecCCCCCccccccCceeCCCCc--EEEEEecCCCceEEEEEEcCCCeEEEee--ccCccccCCcccccC
Q 004816 278 SENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVFGI 353 (729)
Q Consensus 278 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~ 353 (729)
+ +|...+.......+ .++..++|.|.+- +++.... .|.-.|..++.+++-...-. -....+....|.|..
T Consensus 88 ~-~g~w~k~~e~~~h~----~SVNsV~wapheygl~LacasS-DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 88 E-NGRWTKAYEHAAHS----ASVNSVAWAPHEYGLLLACASS-DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred C-CCchhhhhhhhhhc----ccceeecccccccceEEEEeeC-CCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Q ss_pred cc-eeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEe-eccCCcceEEe----eeeCCEEEEEEeCCCCCceEEEEE
Q 004816 354 NS-YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL-LDIPFTDIDNI----TLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 354 ~~-~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~-lt~~~~~v~~~----~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
-+ -.+.....+.-+-+++...|....||.++-+.=.... |....+.++++ ...-.+..+.+.+.+..--||..+
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Q ss_pred cCCCcce
Q 004816 428 LDDHKLK 434 (729)
Q Consensus 428 ~~~~~~~ 434 (729)
.+..+.+
T Consensus 242 ~e~e~wk 248 (299)
T KOG1332|consen 242 EEYEPWK 248 (299)
T ss_pred CccCccc
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.1 Score=36.53 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
.|+|+.+|+.+ ++.+.|..+ -...+..++|||+++|+++... ...|.++-++
T Consensus 36 ~GRll~ydp~t--~~~~vl~~~----L~fpNGVals~d~~~vlv~Et~--------~~Ri~rywl~ 87 (89)
T PF03088_consen 36 TGRLLRYDPST--KETTVLLDG----LYFPNGVALSPDESFVLVAETG--------RYRILRYWLK 87 (89)
T ss_dssp -EEEEEEETTT--TEEEEEEEE----ESSEEEEEE-TTSSEEEEEEGG--------GTEEEEEESS
T ss_pred CcCEEEEECCC--CeEEEehhC----CCccCeEEEcCCCCEEEEEecc--------CceEEEEEEe
Confidence 36899999998 777777654 1223778899999997766443 2567766665
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.95 Score=46.13 Aligned_cols=122 Identities=18% Similarity=0.194 Sum_probs=78.2
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEecc-ccChhHHhh----h----cch-hhhhh---hhhhcCCh---hh
Q 004816 568 ADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYG-VADLSMLRA----E----THK-FESRY---IDNLVGSE---KD 631 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~-~~d~~~~~~----~----~~~-~~~~~---~~~~~~~~---~~ 631 (729)
+..++..+.|.|--|+.+...+...+++.++|...- +.+...... . ... +...| +...+..+ ..
T Consensus 231 ~~Ik~F~VTGaSKRgWttwLTAIaDprv~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~pyyaegi~erl~tp~fkqL 310 (507)
T COG4287 231 VEIKGFMVTGASKRGWTTWLTAIADPRVFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAPYYAEGIDERLETPLFKQL 310 (507)
T ss_pred eeeeeEEEeccccchHHHHHHHhcCcchhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccchhHhhhHHHhhcCHHHHHH
Confidence 456789999999999999888875556666654321 223222111 1 000 00111 11111111 23
Q ss_pred hhhcCccccc-----CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC
Q 004816 632 YYEKSPINFV-----DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692 (729)
Q Consensus 632 ~~~~sp~~~~-----~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 692 (729)
..-.+|+.+. .++..|-.++.+..|...++..+.-++..|.. ..-+.+.|+..|...+
T Consensus 311 ~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG---~kaLrmvPN~~H~~~n 373 (507)
T COG4287 311 LEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPG---EKALRMVPNDPHNLIN 373 (507)
T ss_pred HHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccCCC---ceeeeeCCCCcchhhH
Confidence 3445676655 67788999999999999999999999999875 4478899999997543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=88.65 E-value=2.3 Score=42.65 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=66.7
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
++.++...+..|.|+++|+.+ ++ ...+-.. +..+++.++.|+.-+++.....+ ..|-++++.+..
T Consensus 104 ~~p~la~~G~~GvIrVid~~~--~~~~~~~~gh----G~sINeik~~p~~~qlvls~SkD--------~svRlwnI~~~~ 169 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVS--GQCSKNYRGH----GGSINEIKFHPDRPQLVLSASKD--------HSVRLWNIQTDV 169 (385)
T ss_pred CCeeEEeecceeEEEEEecch--hhhccceecc----CccchhhhcCCCCCcEEEEecCC--------ceEEEEeccCCe
Confidence 445666666678999999976 33 2233333 56678999999987776665543 468888998877
Q ss_pred eEEeeeCC----CeeeeeeeCCCCCeEEEEEecCC
Q 004816 233 IQVLVSGS----DFYAFPRMDPRGERMAWIEWHHP 263 (729)
Q Consensus 233 ~~~lt~~~----~~~~~~~~SPDG~~la~~~~~~~ 263 (729)
...+..|. +..-+..||+||.+|+-...|+.
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhs 204 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHS 204 (385)
T ss_pred EEEEecccccccCcEEEEEEcCCCCeeeccCCcce
Confidence 66666543 34557899999999987776653
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=88.63 E-value=19 Score=36.83 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=69.1
Q ss_pred EEEEEEC-CCCcEEEEeCCCCCCCCeecCCCC---CCCce-------e------eeccee---cCCCCEEEEEEeccCCC
Q 004816 156 TVIFSNY-KDQRLYKHSIDSKDSSPLPITPDY---GEPLV-------S------YADGIF---DPRFNRYVTVREDRRQD 215 (729)
Q Consensus 156 ~i~~~~~-~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~-------~------~~~~~~---SPdG~~l~~~~~~~~~~ 215 (729)
..+|..+ ....|.++|+.+ ++.+++.... .+... . ....+. +|||++|+|..-..
T Consensus 78 ~~aYItD~~~~glIV~dl~~--~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss--- 152 (287)
T PF03022_consen 78 GFAYITDSGGPGLIVYDLAT--GKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS--- 152 (287)
T ss_dssp EEEEEEETTTCEEEEEETTT--TEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT----
T ss_pred eEEEEeCCCcCcEEEEEccC--CcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC---
Confidence 4455544 445899999988 6666665431 00000 0 111233 44887777764322
Q ss_pred CCCcceEEEEEEcCC---C----------ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC
Q 004816 216 ALNSTTEIVAIALNG---Q----------NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD 282 (729)
Q Consensus 216 ~~~~~~~l~~~dl~~---g----------~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~ 282 (729)
..+|.++.+- . +.+.+-.-.....+...+++|. |+|.... ...|+.++.. +.
T Consensus 153 -----~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~-------~~aI~~w~~~--~~ 217 (287)
T PF03022_consen 153 -----RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVE-------QNAIGCWDPD--GP 217 (287)
T ss_dssp -----SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECC-------CTEEEEEETT--TS
T ss_pred -----CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCC-------CCeEEEEeCC--CC
Confidence 4578776431 1 1233322112345678888776 7777643 3459999876 31
Q ss_pred e--eeeEEecCCCCCccccccCceeCC--CCcEEEEEec
Q 004816 283 V--YKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDR 317 (729)
Q Consensus 283 ~--~~~~~~~~~~~~~~~~~~~~~wsp--DG~l~~~~~~ 317 (729)
. .+..++...+. .......+.+.+ ||.|++.+++
T Consensus 218 ~~~~~~~~l~~d~~-~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 218 YTPENFEILAQDPR-TLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp B-GCCEEEEEE-CC--GSSEEEEEE-T--TS-EEEEE-S
T ss_pred cCccchheeEEcCc-eeeccceeeeccccCceEEEEECc
Confidence 1 12333333221 013445666777 6667777655
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=88.59 E-value=1.1 Score=41.01 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 553 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 553 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
..+...++....+ ....+|.++|||+||.+|..++.
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~ 47 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGL 47 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHH
Confidence 3344444444332 24579999999999999988776
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.57 E-value=35 Score=35.87 Aligned_cols=229 Identities=15% Similarity=0.102 Sum_probs=112.9
Q ss_pred EEECCCCcEEEEeCCCCCC--CCeecCCCCCCCceeeeccee-cCCCCEEEEEEeccCCCCCCcceEEEEEEcCC--Cce
Q 004816 159 FSNYKDQRLYKHSIDSKDS--SPLPITPDYGEPLVSYADGIF-DPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNI 233 (729)
Q Consensus 159 ~~~~~~~~l~~~d~~~~~~--~~~~lt~~~~~~~~~~~~~~~-SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~--g~~ 233 (729)
.....++.+.+++... + ....+.... ...+....+ ++++..++...... ...+.+++..+ ...
T Consensus 81 ~~~~~d~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~~~~~~~~~~~~~ 148 (466)
T COG2319 81 LSGSSDGTIKLWDLDN--GEKLIKSLEGLH---DSSVSKLALSSPDGNSILLASSSL-------DGTVKLWDLSTPGKLI 148 (466)
T ss_pred EEecCCCcEEEEEcCC--CceeEEEEeccC---CCceeeEEEECCCcceEEeccCCC-------CccEEEEEecCCCeEE
Confidence 3333566788888775 4 233333321 112334444 88888433333221 13577778775 333
Q ss_pred EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
..+...........|+|+++.++... . ....+.++++. .+.. ...+.+.. ..+....|+|+++.++
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~-~~~~--~~~~~~~~----~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGS-S------LDGTIKLWDLR-TGKP--LSTLAGHT----DPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecC-C------CCCceEEEEcC-CCce--EEeeccCC----CceEEEEEcCCcceEE
Confidence 44444555666789999999555443 1 12347788876 4333 44444444 5567788999998333
Q ss_pred EEecCCCceEEEEEEcCCCeEEE-eec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLA-IYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~-l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
.+....+...+| |...+.... ... ..... ...|.+ ++ .++.....++...+|..........
T Consensus 215 ~~~~~d~~i~~w--d~~~~~~~~~~~~~~~~~~-~~~~~~------------~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 215 ASGSSDGTIRLW--DLSTGKLLRSTLSGHSDSV-VSSFSP------------DG-SLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred EEecCCCcEEEE--ECCCCcEEeeecCCCCcce-eEeECC------------CC-CEEEEecCCCcEEEeeecCCCcEEE
Confidence 432213444444 655444433 121 11110 002322 34 3444666677777775543333122
Q ss_pred eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 392 LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 392 ~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.+..+...+..+ ..+....++..+.. ....+| +.....
T Consensus 279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d-~~~~~~--~~~~~~ 317 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDGKLLASGSSD-GTVRLW--DLETGK 317 (466)
T ss_pred EEecCCccEEEEEECCCCCEEEEeeCC-CcEEEE--EcCCCc
Confidence 221223344444 22233344444444 333344 555543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.26 E-value=31 Score=39.10 Aligned_cols=240 Identities=8% Similarity=-0.055 Sum_probs=119.8
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAF 245 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~ 245 (729)
.+..+|+.+ +....++.-+ ..+.......-+| +|+.+-..+. .......++++|..+++-+.+.+-...-.+
T Consensus 302 ~ve~yd~~~--~~w~~~a~m~---~~r~~~~~~~~~~-~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~ 373 (571)
T KOG4441|consen 302 SVECYDPKT--NEWSSLAPMP---SPRCRVGVAVLNG-KLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVAPMNTKRSD 373 (571)
T ss_pred eeEEecCCc--CcEeecCCCC---cccccccEEEECC-EEEEEccccC--CCcccceEEEecCCCCceeccCCccCcccc
Confidence 566778776 6556665542 1222222233344 4444432221 122357899999998876665432221122
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCc---e
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF---W 322 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~---~ 322 (729)
.....=+..|+.+...+ +.. ....+-.+|.. +.+. ......... .+-.. .-.-+|+||......... .
T Consensus 374 ~~v~~l~g~iYavGG~d-g~~-~l~svE~YDp~-~~~W---~~va~m~~~--r~~~g-v~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 374 FGVAVLDGKLYAVGGFD-GEK-SLNSVECYDPV-TNKW---TPVAPMLTR--RSGHG-VAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred ceeEEECCEEEEEeccc-ccc-ccccEEEecCC-CCcc---cccCCCCcc--eeeeE-EEEECCEEEEEcCcCCCccccc
Confidence 22233233466555222 211 22346666665 3332 122211100 11111 123467777665541222 3
Q ss_pred EEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC---eEEEEEEECCCCceEeeccCCcc
Q 004816 323 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLLDIPFTD 399 (729)
Q Consensus 323 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g---~~~ly~~d~~~g~~~~lt~~~~~ 399 (729)
.+.++|+.+++++.+.+.... .... ....+ ++.||+....++ ...+.++|+.+.+++.++.-...
T Consensus 445 sve~YDP~t~~W~~~~~M~~~----R~~~---g~a~~-----~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTR----RSGF---GVAVL-----NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred eEEEEcCCCCceeecCCcccc----cccc---eEEEE-----CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence 577999999999988754311 1111 12332 456777766555 34478899999999988644333
Q ss_pred eE--EeeeeCCEEEEEEeCCCCC--ceEEEEEcCCCcce
Q 004816 400 ID--NITLGNDCLFVEGASGVEP--SSVAKVTLDDHKLK 434 (729)
Q Consensus 400 v~--~~~~~~~~~~~~~~~~~~~--~~ly~~d~~~~~~~ 434 (729)
.. .+..-++.+++........ ..+-.+|+.+.+.+
T Consensus 513 rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 513 RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 22 2355566676666532221 12444455555543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.18 E-value=46 Score=36.80 Aligned_cols=201 Identities=9% Similarity=0.114 Sum_probs=111.2
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCc
Q 004816 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (729)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 166 (729)
..++.++.++| .-++.-.-. .|+..||.++...-=+.-.++.. .+| .+.|....+.++. ..++.+
T Consensus 13 SdRVKsVd~HPtePw~la~Ly----nG~V~IWnyetqtmVksfeV~~~--PvR-------a~kfiaRknWiv~-GsDD~~ 78 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALY----NGDVQIWNYETQTMVKSFEVSEV--PVR-------AAKFIARKNWIVT-GSDDMQ 78 (794)
T ss_pred CCceeeeecCCCCceEEEeee----cCeeEEEecccceeeeeeeeccc--chh-------hheeeeccceEEE-ecCCce
Confidence 36778899999 777655433 57778898754300000111111 222 1234444444433 345678
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC-ceEEeeeCCC-eee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-NIQVLVSGSD-FYA 244 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g-~~~~lt~~~~-~~~ 244 (729)
|-+++..+. .+..+...+ ..-....+..|.--+++-.+++ ..|-.++-+.+ ...|..+|.. +..
T Consensus 79 IrVfnynt~-ekV~~FeAH----~DyIR~iavHPt~P~vLtsSDD---------m~iKlW~we~~wa~~qtfeGH~HyVM 144 (794)
T KOG0276|consen 79 IRVFNYNTG-EKVKTFEAH----SDYIRSIAVHPTLPYVLTSSDD---------MTIKLWDWENEWACEQTFEGHEHYVM 144 (794)
T ss_pred EEEEecccc-eeeEEeecc----ccceeeeeecCCCCeEEecCCc---------cEEEEeeccCceeeeeEEcCcceEEE
Confidence 888888772 334444444 2445677788888776655554 23555565543 2345555544 456
Q ss_pred eeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCce
Q 004816 245 FPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 322 (729)
Q Consensus 245 ~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~ 322 (729)
..+|.| |-++.|-.+.|+ .|-++.+. ... ..-.+.+++ .++..+.+-+-|. =|.++.. +..
T Consensus 145 qv~fnPkD~ntFaS~sLDr--------TVKVWslg-s~~--~nfTl~gHe----kGVN~Vdyy~~gdkpylIsga--DD~ 207 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDR--------TVKVWSLG-SPH--PNFTLEGHE----KGVNCVDYYTGGDKPYLISGA--DDL 207 (794)
T ss_pred EEEecCCCccceeeeeccc--------cEEEEEcC-CCC--Cceeeeccc----cCcceEEeccCCCcceEEecC--CCc
Confidence 789999 666666555332 36666665 332 233455666 5666777777665 3434332 234
Q ss_pred EEEEEEcCCCe
Q 004816 323 NLHKWIESNNE 333 (729)
Q Consensus 323 ~l~~~d~~~g~ 333 (729)
.+-++|-++..
T Consensus 208 tiKvWDyQtk~ 218 (794)
T KOG0276|consen 208 TIKVWDYQTKS 218 (794)
T ss_pred eEEEeecchHH
Confidence 45566766654
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.03 E-value=7.9 Score=43.14 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=68.9
Q ss_pred eeeeeeeCCCCCeEEEEEecCCC------------CCCCCcEEEEEEecCCC----C-eeeeE-EecCC-----------
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPN------------MPWDKAELWVGYISENG----D-VYKRV-CVAGF----------- 292 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~------------~~~~~~~l~~~d~~~~g----~-~~~~~-~~~~~----------- 292 (729)
...+.+++|....||+....... ..+...+||.++.+ .+ . ..... +..+.
T Consensus 351 RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~-~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~ 429 (524)
T PF05787_consen 351 RPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPD-GNDHAATTFTWELFLVGGDPTDASGNGSNK 429 (524)
T ss_pred CccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEeccc-CCccccceeEEEEEEEecCcccccccccCc
Confidence 33456788987788887654441 12345678888876 33 1 11111 22221
Q ss_pred -CCCccccccCceeCCCCcEEEEEecCCCceE--------------------EEEEEcCCCeEEEee--ccCccccCCcc
Q 004816 293 -DPTIVESPTEPKWSSKGELFFVTDRKNGFWN--------------------LHKWIESNNEVLAIY--SLDAEFSRPLW 349 (729)
Q Consensus 293 -~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~--------------------l~~~d~~~g~~~~l~--~~~~~~~~~~w 349 (729)
+..+..+..++.|+++|+|++..+....... ++..++.+++.+++. +...+++.+.|
T Consensus 430 ~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~f 509 (524)
T PF05787_consen 430 CDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCF 509 (524)
T ss_pred ccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceE
Confidence 1122245667889999997777665222111 334456677777776 45568888888
Q ss_pred cccCcceeeeeecCCCCEEEEEE
Q 004816 350 VFGINSYEIIQSHGEKNLIACSY 372 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s 372 (729)
++ |++.+++.-
T Consensus 510 sp------------Dg~tlFvni 520 (524)
T PF05787_consen 510 SP------------DGRTLFVNI 520 (524)
T ss_pred CC------------CCCEEEEEE
Confidence 86 777776643
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=87.82 E-value=34 Score=34.86 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=50.4
Q ss_pred EEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 222 EIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
.=+++|+.++ +.+.+|...-.+|+|- ||+ |++..+ ...+++.+|.+ +|+...+...++ ...
T Consensus 186 gG~vidv~s~--evl~~GLsmPhSPRWh-dgr-Lwvlds-------gtGev~~vD~~-~G~~e~Va~vpG-------~~r 246 (335)
T TIGR03032 186 GGCVIDIPSG--EVVASGLSMPHSPRWY-QGK-LWLLNS-------GRGELGYVDPQ-AGKFQPVAFLPG-------FTR 246 (335)
T ss_pred CeEEEEeCCC--CEEEcCccCCcCCcEe-CCe-EEEEEC-------CCCEEEEEcCC-CCcEEEEEECCC-------CCc
Confidence 3456888877 4566777777789996 555 777763 23569999987 687655544444 346
Q ss_pred CceeCCCCcEEEEEec
Q 004816 302 EPKWSSKGELFFVTDR 317 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~ 317 (729)
...|. |++++++..
T Consensus 247 GL~f~--G~llvVgmS 260 (335)
T TIGR03032 247 GLAFA--GDFAFVGLS 260 (335)
T ss_pred cccee--CCEEEEEec
Confidence 78887 776666543
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.72 E-value=3.6 Score=46.06 Aligned_cols=197 Identities=10% Similarity=-0.007 Sum_probs=106.2
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceEEe---eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~~l---t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
.+|++|+---+.+++++... +.|.++|+.- +.-++| .+.........|++-.-.|.... ..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~n--------G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG-SQ------ 154 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTN--------GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG-SQ------ 154 (839)
T ss_pred hhhcccccchhhhheeecCC--------CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec-CC------
Confidence 37888887555567776654 5688888864 122333 23444556778988888777555 33
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCC--eEEEeeccCcccc
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFS 345 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g--~~~~l~~~~~~~~ 345 (729)
...|-.+|+. ..+- ...+.+.. .++..+.|+|--. .++...+ .|.-++| |+.-- -.+.++...+-+.
T Consensus 155 Dg~vK~~DlR-~~~S--~~t~~~nS----ESiRDV~fsp~~~~~F~s~~d-sG~lqlW--DlRqp~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 155 DGTVKCWDLR-SKKS--KSTFRSNS----ESIRDVKFSPGYGNKFASIHD-SGYLQLW--DLRQPDRCEKKLTAHNGPVL 224 (839)
T ss_pred CceEEEEeee-cccc--cccccccc----hhhhceeeccCCCceEEEecC-CceEEEe--eccCchhHHHHhhcccCceE
Confidence 2347788887 3321 23333443 6788999999655 4545555 7776666 44321 1223333332222
Q ss_pred CCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eeccC-CcceEEe-eeeCCEEEEEEeCCCCCce
Q 004816 346 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIP-FTDIDNI-TLGNDCLFVEGASGVEPSS 422 (729)
Q Consensus 346 ~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt~~-~~~v~~~-~~~~~~~~~~~~~~~~~~~ 422 (729)
--.|.| ++.++.+..+|+...||-+. +.+.. .++-. -..+..+ ..+.....+.+++.....+
T Consensus 225 c~nwhP-------------nr~~lATGGRDK~vkiWd~t--~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts 289 (839)
T KOG0269|consen 225 CLNWHP-------------NREWLATGGRDKMVKIWDMT--DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS 289 (839)
T ss_pred EEeecC-------------CCceeeecCCCccEEEEecc--CCCccceeEEeecceeeeeeeccCccchhhhhhccccce
Confidence 234553 44566666688888888654 33322 22211 1223333 3333333333444444455
Q ss_pred EEEEEcC
Q 004816 423 VAKVTLD 429 (729)
Q Consensus 423 ly~~d~~ 429 (729)
++++|+.
T Consensus 290 V~VWDvr 296 (839)
T KOG0269|consen 290 VHVWDVR 296 (839)
T ss_pred EEEEeec
Confidence 6666553
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=87.57 E-value=40 Score=35.39 Aligned_cols=201 Identities=8% Similarity=0.103 Sum_probs=94.8
Q ss_pred eEEEEEEcCCCceEEeeeCCC--e--eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC-CC
Q 004816 221 TEIVAIALNGQNIQVLVSGSD--F--YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-PT 295 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~~--~--~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~-~~ 295 (729)
.++|++|+.+.+-+.+..... . ..+.+...-+.+|+...-..... ...+++++|+. +.+........... +.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~--~~~~v~~yd~~-t~~W~~~~~~~~~~~p~ 126 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR--EFSDFYSYDTV-KNEWTFLTKLDEEGGPE 126 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC--ccCcEEEEECC-CCEEEEeccCCCCCCCC
Confidence 468888888766655543111 0 01121222234565554222111 23469999987 55443221111000 00
Q ss_pred ccccccCceeCCCCcEEEEEecC-CC-------ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCE
Q 004816 296 IVESPTEPKWSSKGELFFVTDRK-NG-------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL 367 (729)
Q Consensus 296 ~~~~~~~~~wspDG~l~~~~~~~-~g-------~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 367 (729)
...... ...-+++||+..-.. .+ ...++.+|+++.+++.+....... .+. ........ ++ .
T Consensus 127 -~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~-~~r---~~~~~~~~----~~-~ 195 (341)
T PLN02153 127 -ARTFHS-MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF-EKR---GGAGFAVV----QG-K 195 (341)
T ss_pred -CceeeE-EEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC-CCC---CcceEEEE----CC-e
Confidence 011111 223456655443321 11 235889999999988876321000 000 00111222 33 3
Q ss_pred EEEEEEE------CC-----eEEEEEEECCCCceEeecc----CCc-ceEEeeeeCCEEEEEEeCCC----------C-C
Q 004816 368 IACSYRQ------NG-----RSYLGILDDFGHSLSLLDI----PFT-DIDNITLGNDCLFVEGASGV----------E-P 420 (729)
Q Consensus 368 l~~~s~~------~g-----~~~ly~~d~~~g~~~~lt~----~~~-~v~~~~~~~~~~~~~~~~~~----------~-~ 420 (729)
+|+.... .| ...|+.+|+.+.+++.+.. +.. .......-+++++++..... . .
T Consensus 196 iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 275 (341)
T PLN02153 196 IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLS 275 (341)
T ss_pred EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccccccccc
Confidence 4443211 11 2468999999999988753 111 11222344677877776421 1 1
Q ss_pred ceEEEEEcCCCccee
Q 004816 421 SSVAKVTLDDHKLKA 435 (729)
Q Consensus 421 ~~ly~~d~~~~~~~~ 435 (729)
..+|.+|+.+.+.++
T Consensus 276 n~v~~~d~~~~~W~~ 290 (341)
T PLN02153 276 NEGYALDTETLVWEK 290 (341)
T ss_pred ccEEEEEcCccEEEe
Confidence 258888887776543
|
|
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=87.50 E-value=2.6 Score=42.19 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCCCCccc-cchhhhHHHhh--CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 491 KPPLLVKSHGGPTSEARG-ILNLSIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~-~~~~~~~~la~--~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
..| ||+.||.+.+.... ........+.+ -|..|..++.- .+. ..+-.....++ .-+.+..+.+.+.+.+.
T Consensus 5 ~~P-vViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig-~~~-~~D~~~s~f~~----v~~Qv~~vc~~l~~~p~ 77 (279)
T PF02089_consen 5 PLP-VVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIG-NDP-SEDVENSFFGN----VNDQVEQVCEQLANDPE 77 (279)
T ss_dssp S---EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SS-SSH-HHHHHHHHHSH----HHHHHHHHHHHHHH-GG
T ss_pred CCc-EEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEEC-CCc-chhhhhhHHHH----HHHHHHHHHHHHhhChh
Confidence 345 66679975443322 23333333222 38888888862 110 01111111111 11223334444444333
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CC-CcceEEEEecc
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FR-DTFKAGASLYG 603 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~-~~~~a~v~~~~ 603 (729)
+. +-+.++|+|.||.+.=.++. .+ ..++-.|++.+
T Consensus 78 L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 78 LA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp GT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred hh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 32 57999999999998866665 33 35777887654
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.44 E-value=33 Score=35.77 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=87.3
Q ss_pred ccCceEEcCCCcEEEEeecC-CCCCceEEEEcCCCCCCCC-ccc-CCCCCcc-----cccccccCCceEEE--ECCEEEE
Q 004816 90 RLGGTAVDGHGRLIWLESRP-TEAGRGVLVKEPAKAGDEP-SDI-TPKEYAV-----RTTAQEYGGGAFRI--FGDTVIF 159 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~-~~~~~~~l~~~~~~~~g~~-~~l-~~~~~~~-----~~~~~~~~~~~~~~--~~~~i~~ 159 (729)
..+++++.+++.+|+..-.. .......|++++.+ |.. +.+ +|..+.. ..+....|-..++. ++..++.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 45788883366666664211 11112468888877 343 333 3443311 11111123333444 3444544
Q ss_pred EECCC---------------CcEEEEeCCCCCC-CCe----ecCCCC-CCCceeeecceecCCCCEEEEEEeccCCCCCC
Q 004816 160 SNYKD---------------QRLYKHSIDSKDS-SPL----PITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (729)
Q Consensus 160 ~~~~~---------------~~l~~~d~~~~~~-~~~----~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~ 218 (729)
..+.. -+|+.+|..+. + ... ++.... ......+.++.+-|||+.++--+..... ..
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~-~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~--~~ 240 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTP-GEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPG--TG 240 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCC-CccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCC--cc
Confidence 43321 14777777641 1 111 222100 0013567888999999965555442221 12
Q ss_pred cceEEEEEEcCCC----ce------------EEee-e------CCCeeeeeeeCC--CCCeEEEEEecCCCCCC-CCcEE
Q 004816 219 STTEIVAIALNGQ----NI------------QVLV-S------GSDFYAFPRMDP--RGERMAWIEWHHPNMPW-DKAEL 272 (729)
Q Consensus 219 ~~~~l~~~dl~~g----~~------------~~lt-~------~~~~~~~~~~SP--DG~~la~~~~~~~~~~~-~~~~l 272 (729)
....||.+++... .. +.+. . ..+.+.+.+|-| ||++.+++-.|+...+. ..+++
T Consensus 241 ~~~ri~~v~l~~at~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF~~~~q~T~l 320 (326)
T PF13449_consen 241 NYKRIYRVDLSDATDVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNFNPLTQRTQL 320 (326)
T ss_pred ceEEEEEEEcccccccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCCCCCCCCEEE
Confidence 2567999998642 11 0111 0 034456777876 77775555545544332 44445
Q ss_pred EEEE
Q 004816 273 WVGY 276 (729)
Q Consensus 273 ~~~d 276 (729)
+.+.
T Consensus 321 ~~f~ 324 (326)
T PF13449_consen 321 LLFE 324 (326)
T ss_pred EEEE
Confidence 5443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.38 E-value=27 Score=38.29 Aligned_cols=55 Identities=9% Similarity=-0.073 Sum_probs=37.3
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCe
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGER 254 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~ 254 (729)
..+...+.+|.|.+|+--+++ ..|-++.+.||.......-.+.....+|+|.++.
T Consensus 401 g~Vr~iSvdp~G~wlasGsdD---------GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~ 455 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDD---------GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL 455 (733)
T ss_pred CeEEEEEecCCcceeeecCCC---------CcEEEEEeecceEEEEEeecceeEEEEecCCCCc
Confidence 345667788888876654443 3466778888876544444456677899998874
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.30 E-value=23 Score=33.62 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=78.2
Q ss_pred CCCcEEEEeCCCCCCCCeecCCCC---CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe-ee
Q 004816 163 KDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL-VS 238 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l-t~ 238 (729)
.+..|-.||+.-+ ..++.|.... +-+...+...+..|.|+.|+--..+ +.-.++|+.+|...|- -+
T Consensus 202 qdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d---------ssc~lydirg~r~iq~f~p 271 (350)
T KOG0641|consen 202 QDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD---------SSCMLYDIRGGRMIQRFHP 271 (350)
T ss_pred CCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC---------CceEEEEeeCCceeeeeCC
Confidence 4455666666431 2333443321 1112345677899999966543332 2344558888876544 34
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCee---eeEEecCCCCCccccccCceeCCCCcEEEEE
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY---KRVCVAGFDPTIVESPTEPKWSSKGELFFVT 315 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~---~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~ 315 (729)
........+|||.--++.-.+. ...|.+.|+. |.+. ...+..+.. .-.-...|.|.. +-|++
T Consensus 272 hsadir~vrfsp~a~yllt~sy--------d~~ikltdlq--gdla~el~~~vv~ehk----dk~i~~rwh~~d-~sfis 336 (350)
T KOG0641|consen 272 HSADIRCVRFSPGAHYLLTCSY--------DMKIKLTDLQ--GDLAHELPIMVVAEHK----DKAIQCRWHPQD-FSFIS 336 (350)
T ss_pred CccceeEEEeCCCceEEEEecc--------cceEEEeecc--cchhhcCceEEEEecc----CceEEEEecCcc-ceeee
Confidence 4445667899998887776663 3458888887 3221 122333333 223456898865 66665
Q ss_pred ecCCCceEEEEEE
Q 004816 316 DRKNGFWNLHKWI 328 (729)
Q Consensus 316 ~~~~g~~~l~~~d 328 (729)
........||.++
T Consensus 337 ssadkt~tlwa~~ 349 (350)
T KOG0641|consen 337 SSADKTATLWALN 349 (350)
T ss_pred ccCcceEEEeccC
Confidence 5423455666543
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=87.14 E-value=6.3 Score=39.90 Aligned_cols=74 Identities=12% Similarity=-0.008 Sum_probs=49.1
Q ss_pred EECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC-----------CCCcc
Q 004816 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-----------ALNST 220 (729)
Q Consensus 152 ~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~-----------~~~~~ 220 (729)
|.++++.+.+...+.|+.+|.++ |+.+.+...++ ......|. |+.++......... -....
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~--G~~e~Va~vpG----~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~ 281 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQA--GKFQPVAFLPG----FTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALG 281 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCC--CcEEEEEECCC----CCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhc
Confidence 45778999998889999999987 77788877643 33666776 88655443322211 01123
Q ss_pred eEEEEEEcCCCce
Q 004816 221 TEIVAIALNGQNI 233 (729)
Q Consensus 221 ~~l~~~dl~~g~~ 233 (729)
..|+++|+.+|++
T Consensus 282 CGv~vidl~tG~v 294 (335)
T TIGR03032 282 CGVAVIDLNSGDV 294 (335)
T ss_pred ccEEEEECCCCCE
Confidence 6688888877764
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.05 E-value=25 Score=37.03 Aligned_cols=146 Identities=10% Similarity=0.037 Sum_probs=86.2
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC----C
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----Q 231 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~----g 231 (729)
.|+++...+..|.+||+++ +++.+..... +..+....|.|.--.++....-+ .++.+.|... +
T Consensus 257 nVLaSgsaD~TV~lWD~~~--g~p~~s~~~~---~k~Vq~l~wh~~~p~~LLsGs~D--------~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT--GKPKSSITHH---GKKVQTLEWHPYEPSVLLSGSYD--------GTVALKDCRDPSNSG 323 (463)
T ss_pred eeEEecCCCceEEEEEcCC--CCcceehhhc---CCceeEEEecCCCceEEEecccc--------ceEEeeeccCccccC
Confidence 5788877888999999999 7776655431 45677788999776655443322 3455555531 1
Q ss_pred ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-
Q 004816 232 NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 310 (729)
Q Consensus 232 ~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~- 310 (729)
..-.. .+......|.|-....++++.+. ..||-+|+...|+. +..+..++ ..++.+..++.-.
T Consensus 324 ~~wk~---~g~VEkv~w~~~se~~f~~~tdd-------G~v~~~D~R~~~~~--vwt~~AHd----~~ISgl~~n~~~p~ 387 (463)
T KOG0270|consen 324 KEWKF---DGEVEKVAWDPHSENSFFVSTDD-------GTVYYFDIRNPGKP--VWTLKAHD----DEISGLSVNIQTPG 387 (463)
T ss_pred ceEEe---ccceEEEEecCCCceeEEEecCC-------ceEEeeecCCCCCc--eeEEEecc----CCcceEEecCCCCc
Confidence 11111 12234456877777777776433 34888887733443 44455555 5667777766544
Q ss_pred EEEEEecCCCceEEEEEEcCC
Q 004816 311 LFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 311 l~~~~~~~~g~~~l~~~d~~~ 331 (729)
++.+... .+.-.||.++...
T Consensus 388 ~l~t~s~-d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 388 LLSTAST-DKVVKLWKFDVDS 407 (463)
T ss_pred ceeeccc-cceEEEEeecCCC
Confidence 4444333 4556666665443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 729 | ||||
| 3azo_A | 662 | Crystal Structure Of Puromycin Hydrolase Length = 6 | 2e-94 | ||
| 3azp_A | 662 | Crystal Structure Of Puromycin Hydrolase S511a Muta | 2e-90 | ||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 4e-16 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 2e-13 | ||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 2e-13 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 4e-13 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 6e-13 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 7e-13 | ||
| 2qr5_A | 582 | Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut | 3e-12 | ||
| 1orv_A | 728 | Crystal Structure Of Porcine Dipeptidyl Peptidase I | 2e-07 | ||
| 1z68_A | 719 | Crystal Structure Of Human Fibroblast Activation Pr | 2e-07 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 3e-07 | ||
| 1x70_A | 728 | Human Dipeptidyl Peptidase Iv In Complex With A Bet | 9e-07 | ||
| 2rip_A | 729 | Structure Of Dppiv In Complex With An Inhibitor Len | 9e-07 | ||
| 2qt9_A | 766 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 9e-07 | ||
| 1r9n_A | 739 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 9e-07 | ||
| 1n1m_A | 728 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 9e-07 | ||
| 2rgu_A | 734 | Crystal Structure Of Complex Of Human Dpp4 And Inhi | 9e-07 | ||
| 3nox_A | 753 | Crystal Structure Of Human Dpp-Iv In Complex With S | 9e-07 | ||
| 3qbj_A | 748 | Crystal Structure Of Dipeptidyl Peptidase Iv In Com | 9e-07 | ||
| 1j2e_A | 740 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 9e-07 | ||
| 2qjr_A | 748 | Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf | 9e-07 | ||
| 2jid_A | 736 | Human Dipeptidyl Peptidase Iv In Complex With 1-(3, | 9e-07 | ||
| 1pfq_A | 731 | Crystal Structure Of Human Apo Dipeptidyl Peptidase | 1e-06 | ||
| 4a5s_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A N | 1e-06 | ||
| 3ccb_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A B | 1e-06 | ||
| 2onc_A | 731 | Crystal Structure Of Human Dpp-4 Length = 731 | 1e-06 | ||
| 3q8w_A | 732 | A B-Aminoacyl Containing Thiazolidine Derivative An | 1e-06 | ||
| 2g5p_A | 726 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 1e-06 | ||
| 2bgr_A | 738 | Crystal Structure Of Hiv-1 Tat Derived Nonapeptides | 1e-06 | ||
| 1r9m_A | 733 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 1e-06 | ||
| 1u8e_A | 728 | Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Leng | 2e-06 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 2e-05 | ||
| 3doh_A | 380 | Crystal Structure Of A Thermostable Esterase Length | 4e-04 |
| >pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase Length = 662 | Back alignment and structure |
|
| >pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant Length = 662 | Back alignment and structure |
|
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582 | Back alignment and structure |
|
| >pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv (Cd26) Length = 728 | Back alignment and structure |
|
| >pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein Alpha Length = 719 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino Acid Inhibitor Length = 728 | Back alignment and structure |
|
| >pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor Length = 729 | Back alignment and structure |
|
| >pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl Cyclohexylalanine Inhibitor Length = 766 | Back alignment and structure |
|
| >pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution Length = 739 | Back alignment and structure |
|
| >pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN INHIBITOR Length = 728 | Back alignment and structure |
|
| >pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor Length = 734 | Back alignment and structure |
|
| >pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With Sa-(+)-(6- (Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1, 2-A]pyrimidin- 2-Yl)(Morpholino)methanone Length = 753 | Back alignment and structure |
|
| >pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex With Inhibitor Length = 748 | Back alignment and structure |
|
| >pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv Length = 740 | Back alignment and structure |
|
| >pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf Length = 748 | Back alignment and structure |
|
| >pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4- Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine Length = 736 | Back alignment and structure |
|
| >pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv / Cd26 Length = 731 | Back alignment and structure |
|
| >pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval Heterocyclic Dpp4 Inhibitor Length = 740 | Back alignment and structure |
|
| >pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Benzimidazole Derivative Length = 740 | Back alignment and structure |
|
| >pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4 Length = 731 | Back alignment and structure |
|
| >pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv Complex Length = 732 | Back alignment and structure |
|
| >pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv) Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor 21ac Length = 726 | Back alignment and structure |
|
| >pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides Tat(1-9) Bound To The Active Site Of Dipeptidyl Peptidase Iv (Cd26) Length = 738 | Back alignment and structure |
|
| >pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1 Ang. Resolution. Length = 733 | Back alignment and structure |
|
| >pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Length = 728 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase Length = 380 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 729 | |||
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 0.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 2e-99 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 1e-39 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 8e-38 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 8e-36 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 5e-32 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 3e-29 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 6e-28 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 5e-27 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 1e-26 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 2e-24 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 6e-24 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 1e-22 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 8e-22 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 1e-21 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 1e-21 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 3e-21 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 6e-20 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 2e-19 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 1e-18 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 6e-18 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 2e-17 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 1e-16 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 2e-16 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 1e-15 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 5e-15 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 1e-14 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 3e-13 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 2e-11 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 9e-11 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 2e-09 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-09 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 3e-09 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 4e-09 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 4e-08 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 4e-08 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 1e-07 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 3e-07 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 8e-07 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 5e-06 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 1e-05 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 2e-05 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 3e-05 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 3e-05 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 5e-05 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 7e-05 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 8e-05 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 9e-05 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 9e-05 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 1e-04 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 1e-04 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 2e-04 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 3e-04 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 4e-04 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 6e-04 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 6e-04 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 7e-04 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 8e-04 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 9e-04 |
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 648 bits (1674), Expect = 0.0
Identities = 215/671 (32%), Positives = 328/671 (48%), Gaps = 41/671 (6%)
Query: 69 TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
TAPYG+W+SP+ A +V+ S R G + W+ RP EAGR LV+ A
Sbjct: 4 TAPYGAWQSPIDAALVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRA--DGAE 60
Query: 129 SDITPKEYAVRTTAQEYGGGAFRIF-----GDTVIFSNYKDQRLYKHSIDSK-DSSPLPI 182
P + VR EY G + G ++F+++ DQRLY D+ + P P+
Sbjct: 61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TPDYGEP-LVSYADGIFDPRFNRYVTVREDRRQDAL-NSTTEIVAIALNGQN-------I 233
TP + +AD + P + E+ + + + A+ L+G
Sbjct: 121 TPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180
Query: 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 293
++ F PR+ P G + W+ W HP MPW+ EL ++E+G + G
Sbjct: 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240
Query: 294 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGI 353
E+ + +W+ G L TDR G+WNLH+ + + + EF+ PLW G+
Sbjct: 241 E---EAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM 296
Query: 354 NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFV 412
+ + + + G + LGILD L P+T+ +T+
Sbjct: 297 RWFAPLANG-----LIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVG 351
Query: 413 EGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKA 472
AS V ++ + + + + D + +Y+ P++ F G++
Sbjct: 352 VAASPRTAYEVVELDTVTGRAR-----TIGARHTDPVD-PAYYPEPQIRTFTAP-DGREI 404
Query: 473 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 532
+A+ YPP +P + +E PP +V +HGGPTS +L+L + Y+TSRG DVNYGGS
Sbjct: 405 HAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGS 464
Query: 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR 592
TGYGR +RERL GRWG+VDV DC + AT L G AD RL + GGSAGG+T ++L
Sbjct: 465 TGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVST 524
Query: 593 DTFKAGASLYGVADL-SMLRAETHKFESRYIDNLVGS----EKDYYEKSPINFVDKFSCP 647
D + G LY V DL TH FESRY+D L+GS + Y +++P+ D+ P
Sbjct: 525 DVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVP 584
Query: 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707
+L QGLED V PP+Q + +A+ G+P A + +EGE HGFR+ E + LE ++ +
Sbjct: 585 FLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKETMVRALEAELSLY 644
Query: 708 ARVVGHFDVAD 718
A+V G +VA
Sbjct: 645 AQVFG-VEVAG 654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 317 bits (814), Expect = 2e-99
Identities = 100/515 (19%), Positives = 171/515 (33%), Gaps = 49/515 (9%)
Query: 199 DPRFNRYVTVREDRRQDALNSTTE--IVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256
+ R ++ + TE + AL+G ++ L F D RG+ +A
Sbjct: 108 AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVS--DIRGDLIA 165
Query: 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 316
+ + + L+ +G + + S + S ++ +
Sbjct: 166 GLGFF----GGGRVSLFT-SNLSSGGLRV---FDSGE----GSFSSASISPGMKVTAGLE 213
Query: 317 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376
L + V + +FS I + +A R+ G
Sbjct: 214 TA-REARLVTVDPRDGSVEDLELPSKDFS-SYRPTAITWL----GYLPDGRLAVVARREG 267
Query: 377 RSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436
RS + I + ++ P + + L L S P + V+L +
Sbjct: 268 RSAVFIDGE------RVEAPQGNHGRVVLWRGKLVTSHTSLSTPPRI--VSLPSGE---- 315
Query: 437 DFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLV 496
++ P+ L+ + L+ + G + Y P +V
Sbjct: 316 --PLLEGGLPEDLRRS--IAGSRLVWVESF-DGSRVPTYVLES------GRAPTPGPTVV 364
Query: 497 KSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCC 556
HGGP +E + + G+ V NY GSTGYG E+R +++G ++ D
Sbjct: 365 LVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVS 424
Query: 557 SCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETH 615
+ A + SG A L I G S GGY TL AL + FKAG + V D + +
Sbjct: 425 AAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSD 482
Query: 616 KFESRYIDNLVGSEKDYYEK-SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 674
+I+ L G ++ SPIN VD+ P+ L P ++ L
Sbjct: 483 AAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLAR 542
Query: 675 GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709
G H E+ L + F A
Sbjct: 543 GKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLAT 577
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 1e-39
Identities = 33/255 (12%), Positives = 68/255 (26%), Gaps = 20/255 (7%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 518
IE P + P P ++ HG ++ + +
Sbjct: 7 SSIEIPVG--QDELSGTLLTP----------TGMPGVLFVHGWG--GSQHHSLVRAREAV 52
Query: 519 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 578
G + + G GY + + ++D + L D + + G
Sbjct: 53 GLGCICMTFDLRGHEGYASMRQSVTRAQN----LDDIKAAYDQLASLPYVDAHSIAVVGL 108
Query: 579 SAGGYTTLAALAFRDTFKAGA-SLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSP 637
S GGY + R S D + + + + +
Sbjct: 109 SYGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRRALAPGDNLA 168
Query: 638 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIK 697
+ ++ ++L + D +VP R A N + G H E+ +
Sbjct: 169 LAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFT-NARSLTSRVIAGADHALSVKEHQQ 227
Query: 698 FTLEQQMVFFARVVG 712
+ + +V
Sbjct: 228 EYTRALIDWLTEMVV 242
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 8e-38
Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 52/308 (16%)
Query: 432 KLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEK 491
++++VD K+ S + + + + F V G + +A Y P E K
Sbjct: 60 EMRSVDPKIELKESSFQVSFAECY----DLYFTG-VRGARIHAKYIKPKT-------EGK 107
Query: 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW---- 547
P L++ HG + + + G+ V ++ G G ++
Sbjct: 108 HPALIRFHGYS---SNSGDWNDKLNYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHI 164
Query: 548 --GIVD----------VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTF 595
G+ D D A ++ + DE R+ + G S GG +LA A
Sbjct: 165 IRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRV 224
Query: 596 KAGASLYGVADLSMLRAETHKFESRY---------IDNLVGSEKDYYEK----SPINFVD 642
+ S Y + ++ Y D E + + K N
Sbjct: 225 RKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAK 284
Query: 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQ 702
+ +++ GL D+V PP Y ++ + Y H + +
Sbjct: 285 RIKGDVLMCVGLMDQVCPPSTVFAAYNNIQS---KKDIKVYPDYGHEPMRGFG-----DL 336
Query: 703 QMVFFARV 710
M F +
Sbjct: 337 AMQFMLEL 344
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 8e-36
Identities = 49/280 (17%), Positives = 86/280 (30%), Gaps = 43/280 (15%)
Query: 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 517
+ + + + +Y P E P +VK HG + + W
Sbjct: 56 VYRLTYKS-FGNARITGWYAVPDK-------EGPHPAIVKYHGYN--ASYDGEIHEMVNW 105
Query: 518 TSRGWAFVDVNYGGSTGYGREF--------------RERLLGRWGIVDVNDCCSCATFLV 563
G+A + G + D +
Sbjct: 106 ALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVIS 165
Query: 564 GSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY-GVADLSMLRAET----HKFE 618
+ DE R+ +TGGS GG T+AA A D KA + Y +++ +
Sbjct: 166 SFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVALEQPYLEI 225
Query: 619 SRYIDNLVGSEKD------YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 672
+ + E + +N D+ P+++ GL DKV PP Y L+
Sbjct: 226 NSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLE 285
Query: 673 ENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712
L Y H + A +++ FF +++
Sbjct: 286 ---TKKELKVYRYFGHEYIPAFQ-----TEKLAFFKQILK 317
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 5e-32
Identities = 48/315 (15%), Positives = 86/315 (27%), Gaps = 57/315 (18%)
Query: 437 DFKVVWSSSPDTLKYKSYFSLPELIEFPTE-----------VPGQKAYAYYYPPSNPIYQ 485
DF W + + + E +E + GQ+ + P
Sbjct: 35 DFDEFWEETLAESEKFPLDPVFERMESHLKTVEAYDVTFSGYRGQRIKGWLLVP------ 88
Query: 486 ASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY---------GGSTGYG 536
EEK P +V+ G +W S G+ ++ G + Y
Sbjct: 89 KLEEEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYP 145
Query: 537 REFRERLLGRWGIVDV------------NDCCSCATFLVGSGKADEKRLCITGGSAGGYT 584
+ + + D + D++R+ I GGS GG
Sbjct: 146 EGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGI 205
Query: 585 TLAALAFRDTFKAGASLY-GVADLSMLRAET----HKFESRYIDNLVGSEKDYYEK---- 635
LA A KA + + + ++ E+ +
Sbjct: 206 ALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYF 265
Query: 636 SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695
+NF + P + GL D + PP Y P + Y H +
Sbjct: 266 DGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNYYAG---PKEIRIYPYNNHEGGGSFQ 322
Query: 696 IKFTLEQQMVFFARV 710
+Q+ F ++
Sbjct: 323 AV----EQVKFLKKL 333
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-29
Identities = 34/233 (14%), Positives = 65/233 (27%), Gaps = 18/233 (7%)
Query: 482 PIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFV--DVNYGGSTGYGREF 539
+ PE LL+ HG ++ + + + RG+ + D G
Sbjct: 14 SVLARIPEAPKALLLALHGLQ--GSKEHILALLPGYAERGFLLLAFDAPRHGEREGPPPS 71
Query: 540 RERLLGRWGIVDVNDCCS--CATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKA 597
+ + V + + L + GGS G + LA +
Sbjct: 72 SKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRG 131
Query: 598 GASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLED 656
+ G L + + Y+ P + + P++ G D
Sbjct: 132 VLAFIGSGFPMKLPQGQVVEDPGVL--------ALYQAPPATRGEAYGGVPLLHLHGSRD 183
Query: 657 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709
+VP + K +AL+ + L + E G + F
Sbjct: 184 HIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTPL---MARVGLAFLEH 233
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 6e-28
Identities = 82/518 (15%), Positives = 154/518 (29%), Gaps = 45/518 (8%)
Query: 218 NSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--------DK 269
N T + + + + + A M + + W +
Sbjct: 225 NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY 284
Query: 270 AELWVGYISEN----GDVYKRVCVAGFDPTIVES--PTEPKWSSKG-ELFFVTDRKNGFW 322
+ + + E+ + R + V P+EP ++ G + + + G+
Sbjct: 285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR 344
Query: 323 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSH----GEKNLIACSYRQNGRS 378
++ + + I E + Y I + G +NL +
Sbjct: 345 HICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKV 404
Query: 379 YLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDF 438
+ + F+ + SG + + K V
Sbjct: 405 TCLSCELNPERCQYYSVSFSK-------EAKYYQLRCSGPGLPLYTLHSSVNDKGLRV-- 455
Query: 439 KVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKS 498
+ K +P + K + P + +K PLL+
Sbjct: 456 ---LEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPH----FDKSKKYPLLLDV 508
Query: 499 HGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC 555
+ GP S+ LN + ++ + GS G + + R G +V D
Sbjct: 509 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 568
Query: 556 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAET 614
A G D KR+ I G S GGY T L FK G ++ V+ ++
Sbjct: 569 IEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEY--YDS 626
Query: 615 HKFESRYIDNLVGSE--KDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKAL 671
E RY+ + Y + ++ + F +L G D V Q+ +I KAL
Sbjct: 627 VYTE-RYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKAL 685
Query: 672 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709
+ G+ + Y E HG + + F +
Sbjct: 686 VDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ 723
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 5e-27
Identities = 51/244 (20%), Positives = 88/244 (36%), Gaps = 33/244 (13%)
Query: 469 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDV 527
G K AY P N EK PL + HG SE R I+ + + G A +
Sbjct: 10 GIKLNAYLDMPKNN------PEKCPLCIIIHGFTGHSEERHIVAVQ-ETLNEIGVATLRA 62
Query: 528 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL- 586
+ G +F + L +W + + + + + + G S GG + +
Sbjct: 63 DMYGHGKSDGKFEDHTLFKW----LTNILAVVDYAKKLDFVT--DIYMAGHSQGGLSVML 116
Query: 587 AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEK----------- 635
AA RD KA L A + + ++ + E D ++
Sbjct: 117 AAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVA 176
Query: 636 ---SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692
+FVDK++ P+++ G +D+ VP + + K K LV G+ H +
Sbjct: 177 QTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYK----NCKLVTIPGDTHCYDH 232
Query: 693 AENI 696
+
Sbjct: 233 HLEL 236
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 40/243 (16%), Positives = 67/243 (27%), Gaps = 26/243 (10%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 518
E E + G Y P P P ++ G ++ +
Sbjct: 128 ERHELVVD--GIPMPVYVRIPEGP-------GPHPAVIMLGGLEST--KEESFQMENLVL 176
Query: 519 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 578
RG A + G R V D L + + G
Sbjct: 177 DRGMATATFDGPGQGEMFEYKRIAGDYEKYTSAVVD------LLTKLEAIRNDAIGVLGR 230
Query: 579 SAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFES--RYIDNLVGSEKDYYEK- 635
S GG L + A A S G +DL ET + +Y+ + E+
Sbjct: 231 SLGGNYALKSAACEPRLAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVH 290
Query: 636 ---SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692
+ + + +CP + G+ D VP + + + + LV + H
Sbjct: 291 AALETRDVLSQIACPTYILHGVHD-EVPLSFVDTVLELVPAEH--LNLVVEKDGDHCCHN 347
Query: 693 AEN 695
Sbjct: 348 LGI 350
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-24
Identities = 68/405 (16%), Positives = 130/405 (32%), Gaps = 32/405 (7%)
Query: 300 PTEPKWSSKGELFFVT-DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 358
+ P +S ++ K+G+ ++H ++ + I S E V + +
Sbjct: 314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFYS 373
Query: 359 IQSHG----EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDC-LFVE 413
+N+ S S + L + + +
Sbjct: 374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCH-------LRKERCQYYTASFSDYAKYYAL 426
Query: 414 GASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAY 473
G + + + + LP+ EV +
Sbjct: 427 VCYGPGIPISTLHDGRTDQEIKI-----LEENKELENALKNIQLPKEEIKKLEVDEITLW 481
Query: 474 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYG 530
P +K PLL++ +GGP S+ + +N + G V+
Sbjct: 482 YKMILPPQ----FDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGR 537
Query: 531 GSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590
G+ G + + + G+ +V D + + G DEKR+ I G S GGY + ALA
Sbjct: 538 GTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALA 597
Query: 591 FR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSE--KDYYEKSPINFVDKF-SC 646
FK G ++ V+ + E R++ + + Y + + + F +
Sbjct: 598 SGTGLFKCGIAVAPVSSWEY--YASVYTE-RFMGLPTKDDNLEHYKNSTVMARAEYFRNV 654
Query: 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691
+L G D V + +I KAL + + Y + HG
Sbjct: 655 DYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGLS 699
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 6e-24
Identities = 87/434 (20%), Positives = 155/434 (35%), Gaps = 45/434 (10%)
Query: 293 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH--------KWIESNN-EVLAIYSLDAE 343
PT V ++ G + + ++R GF +L+ + N V + ++D +
Sbjct: 332 SPTWVPLHNSLRFLDDGSILWSSER-TGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEK 390
Query: 344 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI 403
+ E S E + A + L HS S
Sbjct: 391 AG---LAYFRAGIE---SARESQIYAVPLQGGQPQRLSK-APGMHSASFA---------- 433
Query: 404 TLGNDCLFVEGASGVE-PSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIE 462
N ++V+ S P + + K+ + + +Y+ E
Sbjct: 434 --RNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEFGT 491
Query: 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE------ARGILNLSIQY 516
P+ P ++ P+ V +GGP S+ +L QY
Sbjct: 492 LTAADGKTPLNYSVIKPAG----FDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQY 547
Query: 517 WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCIT 576
+G+ ++ G+ GR+F L G+ G V+V D +L D R+ +
Sbjct: 548 LAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQ 607
Query: 577 GGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEK 635
G S GGY TL LA D++ G + V D + ++H + RY+D ++ Y E
Sbjct: 608 GWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLY--DSH-YTERYMDLPARNDAGYREA 664
Query: 636 SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695
+ ++ P++L G+ D V + + AL++ G P L+ Y G +HG A+
Sbjct: 665 RVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADA 724
Query: 696 IKFTLEQQMVFFAR 709
+ F R
Sbjct: 725 LHR-YRVAEAFLGR 737
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 50/259 (19%), Positives = 86/259 (33%), Gaps = 16/259 (6%)
Query: 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-----RGILNL 512
Y P + P +K P++V +GGP ++ R +
Sbjct: 455 IRTGTIMAADGQTPLYYKLTMPLH----FDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGG 510
Query: 513 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572
Y +G+A V+ GS G F + + R G ++ D FL D R
Sbjct: 511 WDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADR 570
Query: 573 LCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD 631
+ + G S GG+ T + D FK G + V D + + RY D + +
Sbjct: 571 IGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNR--YAIM-YGERYFDAPQENPEG 627
Query: 632 YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691
Y + + ++L G D VV + A + Y +H
Sbjct: 628 YDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVM 687
Query: 692 KAENIKFTLEQQMV-FFAR 709
+ + L + + +F
Sbjct: 688 GPDRVH--LYETITRYFTD 704
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 8e-22
Identities = 68/467 (14%), Positives = 138/467 (29%), Gaps = 62/467 (13%)
Query: 256 AWIEWHH--PNMPWDKAELWVGYISENG--DVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311
AW+ + P D + + G + + V+ P S + + G+
Sbjct: 302 AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS--SNDNIQSITSGD- 358
Query: 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 371
+ VT + + E N++ + + D R L+ + + ++C
Sbjct: 359 WDVTK-------ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG------NFNRQCLSCD 405
Query: 372 YRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH 431
+N + F+ G V D
Sbjct: 406 LVENCTYFSASFSHSMD---------------------FFLLKCEGPGVPMVTVHNTTDK 444
Query: 432 KLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEK 491
K ++ K + +P++ E+ P+ +
Sbjct: 445 KKMFD-----LETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPAT----FTDTTH 495
Query: 492 PPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG 548
PLL+ G P S+ + ++ +S G V + GS G + + R G
Sbjct: 496 YPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLG 555
Query: 549 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-----DTFKAGASLYG 603
+++ D ++ D R+ + G GGY + L + TF G++L
Sbjct: 556 LLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSP 615
Query: 604 VADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPD 662
+ D + + F RY+ + Y + V ++ D+ +
Sbjct: 616 ITDFKL--YASA-FSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQ 672
Query: 663 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709
++ L +L Y E H F + + + FF
Sbjct: 673 HTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVE 719
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 97.6 bits (242), Expect = 1e-21
Identities = 41/281 (14%), Positives = 86/281 (30%), Gaps = 46/281 (16%)
Query: 435 AVDFKVVWSSSPDTLK------YKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASP 488
AV+ +V+ PD + ++ YF P + P V + + P P
Sbjct: 120 AVELEVLDGHDPDPGRLLCQTRHERYFLPPGVRREP--VRVGRVRGTLFLPPEP------ 171
Query: 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG 548
P +V G G+L +G+A + + Y +
Sbjct: 172 -GPFPGIVDMFGTGG----GLLEYRASLLAGKGFAVMALAYYNYEDLPKTMET------- 219
Query: 549 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVA--- 605
+ + +L+ + + + G S GG L+ +F A + G
Sbjct: 220 -LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANV 278
Query: 606 --------------DLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILF 651
++ R + K I +++ S + ++ V++ +
Sbjct: 279 GGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFL 338
Query: 652 QGLEDKVVPPDQA-RKIYKALKENGLPVA-LVEYEGEQHGF 690
G +D + + K L+ +G ++ Y H
Sbjct: 339 VGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYI 379
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 96.3 bits (239), Expect = 1e-21
Identities = 48/235 (20%), Positives = 74/235 (31%), Gaps = 48/235 (20%)
Query: 473 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAF-------- 524
Y + P +P+ K PL+V HG L ++ + WA
Sbjct: 160 YRLFVPKD-----VNPDRKYPLVVFLHGAGERGTDNYLQVAGNRG-AVVWAQPRYQVVHP 213
Query: 525 ---VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAG 581
+ ++ + F +R + L+ DE R+ ITG S G
Sbjct: 214 CFVLAPQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMG 273
Query: 582 GYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINF 640
GY T A+ + F A + G D+S +
Sbjct: 274 GYGTWTAIMEFPELFAAAIPICGGGDVSKVERIKDI------------------------ 309
Query: 641 VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695
PI +F +D VVP + +R + K L E G V EYE +
Sbjct: 310 ------PIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDP 358
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 93.2 bits (231), Expect = 3e-21
Identities = 38/269 (14%), Positives = 66/269 (24%), Gaps = 52/269 (19%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNP----IYQASPEEKPPLLVKSHGG-------PTSEAR 507
+ I A + +Q + ++ HGG ++
Sbjct: 4 DKIHHHHHHMSNTVRAISPDITLFNKTLTFQEISQNTREAVIYIHGGAWNDPENTPNDFN 63
Query: 508 GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSG 566
+ N T + Y RL + D S T LV
Sbjct: 64 QLANTIKSMDTESTVCQYSIEY------------RLSPEITNPRNLYDAVSNITRLVK-- 109
Query: 567 KADEKRLCITGGSAGGYTTLAALA------------------FRDTFKAGASLYGVADLS 608
+ + + G S G LA K L G+ L
Sbjct: 110 EKGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLK 169
Query: 609 MLRAETHKFESRYIDNLVGSEKDYYEKSPI-------NFVDKFSCPIILFQGLEDKVVPP 661
L + + YE+ P + +FS + L D+++
Sbjct: 170 ELL-IEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTL 228
Query: 662 DQARKIYKALKENGLPVALVEYEGEQHGF 690
Q + L++ L L + H
Sbjct: 229 RQTNCLISCLQDYQLSFKLYLDDLGLHND 257
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 92.2 bits (228), Expect = 6e-20
Identities = 37/279 (13%), Positives = 77/279 (27%), Gaps = 42/279 (15%)
Query: 435 AVDFKVVWSSSPDTLKYKSYFSLPELIEFP----TEVPGQKAYAYYYPPSNPIYQASPEE 490
V+ +V+ P+ + P V + A + P P
Sbjct: 104 VVELEVLDGHDPEPGRLLCQAQHERHFLPPGVWRQSVRAGRVRATLFLPPGP-------G 156
Query: 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 550
P ++ G G+L G+A + + Y +
Sbjct: 157 PFPGIIDIFGIGG----GLLEYRASLLAGHGFATLALAYYNFEDLPNNMDN--------I 204
Query: 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSM- 609
+ +++ + + + G S G L+ +F A S+ G
Sbjct: 205 SLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISGNT 264
Query: 610 -------------LRAETHKFESRYIDNLVGSEKDYYEK---SPINFVDKFSCPIILFQG 653
K + ++V + ++K PI+L G
Sbjct: 265 AINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVG 324
Query: 654 LEDKVVPPDQ-ARKIYKALKENGLPVA-LVEYEGEQHGF 690
+D + A+ + + L+ +G ++ Y G H
Sbjct: 325 QDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYI 363
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 2e-19
Identities = 34/228 (14%), Positives = 62/228 (27%), Gaps = 37/228 (16%)
Query: 477 YPPSNPIYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 535
+ + PL V HGG + + RG+ ++Y
Sbjct: 73 FYSEKT------TNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDY------ 120
Query: 536 GREFRERLLGRWGIVD-VNDCCSCATFLVG-SGKADEKRLCITGGSAGGYTTLAALA--- 590
L + + + ++ + L G AG + L
Sbjct: 121 ------NLCPQVTLEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPN 174
Query: 591 -----FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFV---- 641
A L GV DL L + +E++ SP+ +
Sbjct: 175 VITAQRSKMVWALIFLCGVYDLRELSNLESVNPKNILG---LNERNIESVSPMLWEYTDV 231
Query: 642 -DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688
S I + D +Q+R L++ G + ++G H
Sbjct: 232 TVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDH 279
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 1e-18
Identities = 39/262 (14%), Positives = 81/262 (30%), Gaps = 51/262 (19%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 518
+ IE P E + Y ++ L+ GG TS + +
Sbjct: 136 KSIEVPFEG--ELLPGYAIIS--------EDKAQDTLIVVGGGDTS-REDLFYMLGYSGW 184
Query: 519 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 578
+ + V+ G G+ + L + ++ +A +++ I G
Sbjct: 185 EHDYNVLMVDL---PGQGKNPNQGLHFEVDARAA------ISAILDWYQAPTEKIAIAGF 235
Query: 579 SAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG----------- 627
S GGY T A+ KA + + D++ + + + ++
Sbjct: 236 SGGGYFTAQAVEKDKRIKAWIASTPIYDVAEVFRISFSTALKAPKTILKWGSKLVTSVNK 295
Query: 628 --------------------SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKI 667
S + E++ I +K P + G + Q++ +
Sbjct: 296 VAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQSQVL 355
Query: 668 YKALKENGLPVALVEYEGEQHG 689
Y K+ G+ V L ++ E
Sbjct: 356 YDNFKQRGIDVTLRKFSSESGA 377
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 6e-18
Identities = 37/257 (14%), Positives = 73/257 (28%), Gaps = 48/257 (18%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-----PTSEARGILNLS 513
++ + Y P+++ GG E I
Sbjct: 3 QVEQRTLNTAAHPFQITAYWLDQI-SDFETAVDYPIMIICPGGGFTYHSGREEAPIA--- 58
Query: 514 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD---VNDCCSCATFLVGSGKA-- 568
+ G V +NY +L+ V + + ++ A
Sbjct: 59 -TRMMAAGMHTVVLNY------------QLIVGDQSVYPWALQQLGATIDWITTQASAHH 105
Query: 569 -DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLS--------------MLRAE 613
D +R+ + G SAGG+ A T + Y + +
Sbjct: 106 VDCQRIILAGFSAGGHVV-ATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGF 164
Query: 614 THKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE 673
N + ++ + + V S P ++Q D+ VPP + K +A+ +
Sbjct: 165 PTT---SAARNQITTDARLW--AAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQ 219
Query: 674 NGLPVALVEYEGEQHGF 690
+ + A + HG
Sbjct: 220 HQVATAYHLFGSGIHGL 236
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-17
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 9/124 (7%)
Query: 569 DEKRLCITGGSAGGYTTLAALAFRDTFK--AGASLYGVADLSMLRAETHKFESRYIDNLV 626
+ +++ + G SAGG+ + Y V N
Sbjct: 117 NPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTS--FTFGWPSDLSHF---NFE 171
Query: 627 GSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 686
Y + V + P ++ +D+ VP + K L ++ +P +E
Sbjct: 172 IENISEY--NISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESG 229
Query: 687 QHGF 690
HG
Sbjct: 230 PHGV 233
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 1e-16
Identities = 36/255 (14%), Positives = 71/255 (27%), Gaps = 48/255 (18%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-----PTSEARGILNLS 513
++I+ + Y + P + + P ++ GG P ++A +
Sbjct: 21 QVIKQKLTATCAQLTGYLHQPDTN----AHQTNLPAIIIVPGGSYTHIPVAQAESLA--- 73
Query: 514 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR---WGIVDVNDCCSCATFLVGSGKA-- 568
+ G+ + Y LL G+ V D L
Sbjct: 74 -MAFAGHGYQAFYLEY------------TLLTDQQPLGLAPVLDLGRAVNLLRQHAAEWH 120
Query: 569 -DEKRLCITGGSAGGYTTLAALAF------------RDTFKAGASLYGVADLSMLRAETH 615
D +++ G S GG+ + K + G +S L
Sbjct: 121 IDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVISPLLGFPK 180
Query: 616 KFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG 675
+ + + V+ + P ++ +D +VP AL
Sbjct: 181 DDATL---ATWTPTPNEL--AADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALATAK 235
Query: 676 LPVALVEYEGEQHGF 690
+P L ++ HG
Sbjct: 236 IPYELHVFKHGPHGL 250
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 2e-16
Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 31/215 (14%)
Query: 477 YPPSNPIYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 535
+ P L V HGG + + + S+GWA +Y
Sbjct: 56 FLPEGT--------PVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSY------ 101
Query: 536 GREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCITGGSAGGY-TTLAALAFRD 593
L I + T K + + + G SAGG+
Sbjct: 102 ------ELCPEVRISEITQQISQAVTAAA---KEIDGPIVLAGHSAGGHLVARMLDPEVL 152
Query: 594 TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQG 653
GA + V +S L + + +SP+ +++ + ++ G
Sbjct: 153 PEAVGARIRNVVPISPLSDLRPLLRTSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVG 212
Query: 654 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688
++ DQA + +A V + H
Sbjct: 213 GAERPAFLDQAIWLVEAWD-----ADHVIAFEKHH 242
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 1e-15
Identities = 41/270 (15%), Positives = 77/270 (28%), Gaps = 43/270 (15%)
Query: 452 KSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN 511
YF I + G + P + + HG + +L
Sbjct: 16 NLYFQGMATITLERD--GLQLVGTREEPFGE--------IYDMAIIFHGFTANRNTSLLR 65
Query: 512 LSIQYWTSRGWAFVDVNY---GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568
A V ++ G S G +F + + D + ++
Sbjct: 66 EIANSLRDENIASVRFDFNGHGDSDG---KFENMTVLNE----IEDANAILNYVKTDPHV 118
Query: 569 DEKRLCITGGSAGGYTTL-AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 627
+ + G + GG A + D K L A L E + Y + +
Sbjct: 119 R--NIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIP 176
Query: 628 SEKDYYEKS-------------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 674
+ + + +F+ P+ L G +D VV P+ ++K + +
Sbjct: 177 DRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQ-- 234
Query: 675 GLPVALVEYEGEQHGF---RKAENIKFTLE 701
L EG H F + + T +
Sbjct: 235 --NSTLHLIEGADHCFSDSYQKNAVNLTTD 262
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 5e-15
Identities = 33/253 (13%), Positives = 62/253 (24%), Gaps = 38/253 (15%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 518
+ +E P E K A+ + + +KP +V G S + L +
Sbjct: 169 KQLEIPFE--KGKITAHLHLTNT--------DKPHPVVIVSAGLDSLQTDMWRLFRDHLA 218
Query: 519 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 578
A + V+ G + L + + L D R+ + G
Sbjct: 219 KHDIAMLTVDMPSV---GYSSKYPLTEDYS----RLHQAVLNELFSIPYVDHHRVGLIGF 271
Query: 579 SAGGYTTLAALAFRDT-FKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKS- 636
GG + KA L + + + +++ S
Sbjct: 272 RFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKSVVDI 331
Query: 637 ---------------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 681
K PI+ D V P + + A
Sbjct: 332 YSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTY---GKAKK 388
Query: 682 EYEGEQH-GFRKA 693
G+ ++
Sbjct: 389 ISSKTITQGYEQS 401
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 1e-14
Identities = 39/286 (13%), Positives = 85/286 (29%), Gaps = 49/286 (17%)
Query: 469 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVN 528
GQ+ + + PP P + +L+ G L+ +Y ++ G+ +
Sbjct: 17 GQELHVWETPPKEN----VPFKNNTILI--ASGFARRMDHFAGLA-EYLSTNGFHVFRYD 69
Query: 529 Y----GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 584
G S+G E + N C+ +L G + + + S
Sbjct: 70 SLHHVGLSSG---SIDEFTMTTG----KNSLCTVYHWLQTKG---TQNIGLIAASLSARV 119
Query: 585 TLAALAFRDTFKAGASLYGVADLSMLRAETHKFES----------------------RYI 622
++ + + GV +L + F+ ++
Sbjct: 120 AYEVISDLEL-SFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFV 178
Query: 623 DNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682
+ D + S ++ V S P+I F D V ++ + ++ L
Sbjct: 179 RDCFEHHWDTLD-STLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTG--HCKLYS 235
Query: 683 YEGEQHGFRKAENIKFTLEQQMVFFARVV--GHFDVADEIIPIKID 726
G H + + Q + A + G ++ + I +
Sbjct: 236 LLGSSHDLGENLVVLRNFYQSVTKAAIAMDGGSLEIDVDFIEPDFE 281
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} Length = 241 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 46/243 (18%), Positives = 77/243 (31%), Gaps = 46/243 (18%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 518
P+ G+ AY+ P + + P+++ E G ++ I+
Sbjct: 7 GETSIPS--QGENMPAYHARP------KNADGPLPIVIVVQ-----EIFG-VHEHIRDLC 52
Query: 519 SR----GWA------FVDVNYGGSTGYGREFRERLLGRWGIVDV-NDCCSCATFLVGSGK 567
R G+ + + L+ + V D A++ G
Sbjct: 53 RRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG- 111
Query: 568 ADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 627
D RL ITG GG T A KA + YG LVG
Sbjct: 112 GDAHRLLITGFCWGGRITWLYAAHNPQLKAAVAWYGK--------------------LVG 151
Query: 628 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687
+ K P++ + P++ G +D +P D + +AL+ +V Y
Sbjct: 152 EKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEAD 211
Query: 688 HGF 690
H F
Sbjct: 212 HAF 214
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} Length = 275 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 32/279 (11%), Positives = 74/279 (26%), Gaps = 82/279 (29%)
Query: 483 IYQASPEEKPPLLVKSHGG------PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536
I +A + ++V HGG + +++ + + + ++Y
Sbjct: 20 IIKAKNQPTKGVIVYIHGGGLMFGKANDLSPQYIDIL-----TEHYDLIQLSY------- 67
Query: 537 REFRERLLGRW---GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFR 592
RLL I++ D + + + + G S+G Y L+ L A
Sbjct: 68 -----RLLPEVSLDCIIE--DVYASFDAIQS--QYSNCPIFTFGRSSGAY--LSLLIARD 116
Query: 593 DTFKAGASLYGVADLSMLRAETHKFESRYIDNLV--------GSEKDYYEKSPINFVDKF 644
YG + ++ +T I + S + +
Sbjct: 117 RDIDGVIDFYGYSRINTEPFKTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIY 176
Query: 645 SC--------------------------------PIILFQGLEDKVVPPDQARKIYKALK 672
P+ + D VP +++ +
Sbjct: 177 VYARGTGKWINMINIADYTDSKYNIAPDELKTLPPVFIAHCNGDYDVPVEESEH----IM 232
Query: 673 ENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711
+ +H F + ++ + + +VV
Sbjct: 233 NHVPHSTFERVNKNEHDF-----DRRPNDEAITIYRKVV 266
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 9e-11
Identities = 38/257 (14%), Positives = 68/257 (26%), Gaps = 53/257 (20%)
Query: 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 517
+ V K P+ +++ +HG +S + +Y
Sbjct: 12 EYAVSVS--VGEVKLKGNLVIPNGA---------TGIVLFAHGSGSSR----YSPRNRYV 56
Query: 518 TSR----GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 573
G A + ++ + R R L + + +L + ++
Sbjct: 57 AEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKV 116
Query: 574 CITGGSAGGYTTL-AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDY 632
G S GG L AA +T +A S G DL
Sbjct: 117 GYFGASTGGGAALVAAAERPETVQAVVSRGGRPDL------------------------- 151
Query: 633 YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692
+ + P +L G D V AL++ LV H F +
Sbjct: 152 ----APSALPHVKAPTLLIVGGYDLPVIAMNED----ALEQLQTSKRLVIIPRASHLFEE 203
Query: 693 AENIKFTLEQQMVFFAR 709
+ + +F
Sbjct: 204 PGALTAVAQLASEWFMH 220
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} Length = 270 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 2e-09
Identities = 38/269 (14%), Positives = 71/269 (26%), Gaps = 52/269 (19%)
Query: 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 517
I + A P+ + P + G S+ G L +
Sbjct: 11 THAITVGQGSDARSIAALVRAPAQD--------ERPTCIWLGGY-RSDMTGTKALEMDDL 61
Query: 518 -TSRGWAFVDVNY---GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 573
S G + +Y G S G FR+ + RW + + + EK +
Sbjct: 62 AASLGVGAIRFDYSGHGASGG---AFRDGTISRW----LEEALAVLDHF-----KPEKAI 109
Query: 574 CITGGSAGGYTTLAALAFRDTFKAGASLYGVADLS-------------MLRAETHKFESR 620
+ G + + G+ ++ + E +
Sbjct: 110 LVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAEN 169
Query: 621 YIDNLVGSEKDYYEKSPINFVD------------KFSCPIILFQGLEDKVVPPDQARKIY 668
V ++ CP+ + QG+ D VP A K+
Sbjct: 170 GYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLV 229
Query: 669 KALKENGLPVALVEYEGEQHGFRKAENIK 697
+ L + V L H + ++I
Sbjct: 230 EHLPAD--DVVLTLVRDGDHRLSRPQDID 256
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 2e-09
Identities = 37/272 (13%), Positives = 59/272 (21%), Gaps = 56/272 (20%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-GPTSE------------ 505
E EF P + P + + P ++ G G T E
Sbjct: 88 EKWEFYPF-PKSVSTFLVLKPEHL------KGAVPGVLCIPGSGRTKEGLVGEPGICDKL 140
Query: 506 ---ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE---------------RLLGR- 546
G+ V V+ + LG
Sbjct: 141 TEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWS 200
Query: 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVAD 606
W ++ + R+ I+G S G + A
Sbjct: 201 WLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDKDIYAFVY---NDF 257
Query: 607 LSMLRAETHKFESRYIDNLVGSEKDYYEKSP-----INFVDKFSC----PIILFQGLEDK 657
L + +N P NF D + PII +G D+
Sbjct: 258 LCQTQERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNFPDVVASLAPRPIIFTEGGLDR 317
Query: 658 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 689
+ Y A G P + +
Sbjct: 318 DFRL--VQSAYAAS---GKPENAEFHHYPKFA 344
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 3e-09
Identities = 67/451 (14%), Positives = 130/451 (28%), Gaps = 115/451 (25%)
Query: 261 HHPNMPWDKAELWVGYISENGD---VYKRVCVAGFDPTIVESPTEPKWSSK--GELFFVT 315
HH +M ++ E Y D V++ V FD V+ + S + +
Sbjct: 3 HHHHMDFETGEHQYQY----KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 316 DRKNG----FWNLHKWIESNNEVLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLI 368
D +G FW L + E++ + L + ++ E Q +++
Sbjct: 59 DAVSGTLRLFWTL---LSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQ----PSMM 108
Query: 369 ACSYRQNGRSYLGILDDFGHSLSLLDI----PFTDIDNITLG---NDCLFVEGASGVEPS 421
Y L + + ++ P+ + L + ++G G +
Sbjct: 109 TRMYI----EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 422 SVAKVTLDDHKLKAV-DFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPS 480
VA +K++ DFK+ W L K+ S ++E QK P
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW------LNLKNCNSPETVLE-----MLQKLLYQIDPNW 213
Query: 481 NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540
++ L + L ++ + +
Sbjct: 214 TS--RSDHSSNIKL-------RIHSIQAELRRLLKS--------------------KPYE 244
Query: 541 ERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCIT-------GGSAGGYTTLAALAFR 592
LL ++ V + + F + K L T SA T ++
Sbjct: 245 NCLL----VLLNVQNAKAWNAFNLSC-----KILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 593 DTFKAGASLYGVA-----DLSMLRAETHKFESRYIDNLVGSEK-------DYYEKSPINF 640
T + L E R + +++ D ++
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHV---N 351
Query: 641 VDKFSCPIILFQGLEDKVVPPDQARKIYKAL 671
DK + I L V+ P + RK++ L
Sbjct: 352 CDKLTTIIESS--LN--VLEPAEYRKMFDRL 378
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A Length = 259 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-09
Identities = 34/263 (12%), Positives = 65/263 (24%), Gaps = 54/263 (20%)
Query: 462 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG 521
F EV G+ Y+ P+ L++ HGG T + + + RG
Sbjct: 33 GFSLEVDGRTVPGVYWSPAEG-------SSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRG 85
Query: 522 WA--FVDVNYGGSTGYGREFRERLLGRWGIV-------------DVNDCCSCATFLVGSG 566
+ +D G + RE + D + F+
Sbjct: 86 ISAMAIDGPGHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAEE 145
Query: 567 KADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLV 626
G S G L A K +
Sbjct: 146 GPR--PTGWWGLSMGTMMGLPVTASDKRIKVALLGLMGVE-------------------- 183
Query: 627 GSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 686
+ + + +CP+ +D++V +++ L L G+
Sbjct: 184 ----GVNGEDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLGTK--QKTLHVNPGK 237
Query: 687 QHGFRKAENIKFTLEQQMVFFAR 709
E T++ + +
Sbjct: 238 HSAVPTWEMFAGTVD----YLDQ 256
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 4e-09
Identities = 36/275 (13%), Positives = 66/275 (24%), Gaps = 50/275 (18%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG----------------GP 502
E EF P + P N + P ++ G
Sbjct: 93 EKWEFYPL-PKCVSTFLVLIPDNI------NKPVPAILCIPGSGGNKEGLAGEPGIAPKL 145
Query: 503 TSEARGILNLSIQYWTSRGWAFVDVNYGG------------STGYGREFRER---LLGR- 546
+ + G+ V V+ + Y + R LG
Sbjct: 146 NDRYKDPKLTQALNFVKEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWS 205
Query: 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVAD 606
+ ++ + R+ ++G S G + + A +
Sbjct: 206 YLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSIYAFVYNDFLCQ 265
Query: 607 LSMLRAETHKFESRYIDNLVGSEKDYYE--KSPINFVDKFSC----PIILFQGLEDKVVP 660
+ S + NF D + PIIL +G D+ +
Sbjct: 266 TQERAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNFPDIVAALAPRPIILTEGGLDRDLD 325
Query: 661 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695
RK Y + G P + Y ++
Sbjct: 326 L--VRKAYAIV---GTPDNVKIYHYKKFSDPDTRK 355
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} Length = 270 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 37/200 (18%), Positives = 60/200 (30%), Gaps = 42/200 (21%)
Query: 529 YGGSTGYGREFRERL------------------LGRWGIVDVNDCCSCATFLVGSGKADE 570
+ G+ R E +D + G K
Sbjct: 49 FTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGWLKQRC 108
Query: 571 KRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFE--SRYIDNLVGS 628
+ + +TG S GG TL + D+ + A RY+D++
Sbjct: 109 QTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSD 168
Query: 629 EKDY------YEKSPINFV--------------DKFSCPIILFQGLEDKVVPPDQARKIY 668
K+ YEK+P + D+ CP ++F ED VVPP A I+
Sbjct: 169 LKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIF 228
Query: 669 KALKENGLPVALVEYEGEQH 688
+ + +V H
Sbjct: 229 QGISST--EKEIVRLRNSYH 246
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* Length = 236 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 26/165 (15%), Positives = 41/165 (24%), Gaps = 35/165 (21%)
Query: 530 GGSTGYGREFRERLLGRWGIVD----VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTT 585
RE+ W D V D + + ++ + G S GG
Sbjct: 71 TALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQP-YSNGKVGLVGYSLGGALA 129
Query: 586 LAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 645
A + YGV + +N V +
Sbjct: 130 FLV-ASKGYVDRAVGYYGVG----------------------------LEKQLNKVPEVK 160
Query: 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690
P + G +D VP + I + + YE H F
Sbjct: 161 HPALFHMGGQDHFVPAPSRQLI-TEGFGANPLLQVHWYEEAGHSF 204
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} Length = 258 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 37/216 (17%), Positives = 62/216 (28%), Gaps = 45/216 (20%)
Query: 476 YYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 535
Y P + P+++ +G L + +W S G+ G
Sbjct: 37 YRPRDLG----QGGVRHPVILWGNGTGAG-PSTYAGL-LSHWASHGFVVAAAETSN-AGT 89
Query: 536 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTF 595
GRE L D + + SGK + R+ +G S GG ++ A
Sbjct: 90 GREMLACL-------DYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMA-GQDTRV 141
Query: 596 KAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLE 655
+ A + +G D + P+ L G
Sbjct: 142 RTTAPIQPYT--------------------LGLGHDSASQRRQQ------GPMFLMSGGG 175
Query: 656 DKVVPP-DQARKIYKALKENGLPVALVEYEGEQHGF 690
D + P A+ +Y+ +PV E H
Sbjct: 176 DTIAFPYLNAQPVYRRA---NVPVFWGERRYVSHFE 208
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 23/173 (13%)
Query: 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD 593
G+G +L + + + + ++ V A ++ + G S GG + AL
Sbjct: 59 GHGTVEPLDILTK---GNPDIWWAESSAAVAHMTAKYAKVFVFGLSLGGIFAMKALETLP 115
Query: 594 TFKAGASLYG--VADLSMLRAETHKFESRYIDNLVGSEKD-----YYEKSPINFVDKFS- 645
AG + L K+ + Y++ L G + Y + +D+F+
Sbjct: 116 GITAGGVFSSPILPGKHHLVPGFLKY-AEYMNRLAGKSDESTQILAYLPGQLAAIDQFAT 174
Query: 646 ----------CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688
P + Q +D++V A ++ AL N V Y+ +H
Sbjct: 175 TVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALI-NAARVDFHWYDDAKH 226
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 8e-07
Identities = 38/224 (16%), Positives = 59/224 (26%), Gaps = 47/224 (20%)
Query: 467 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 526
G YYP N Y + S G ++ I L + S G+ +
Sbjct: 79 ADGFGGGTIYYPRENNTY--------GAIAISPGYTGTQ-SSIAWLG-ERIASHGFVVIA 128
Query: 527 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 586
++ + + R R L +D + D RL + G S GG TL
Sbjct: 129 IDTNTTLDQP-DSRARQLNA--ALDY---MLTDASSAVRNRIDASRLAVMGHSMGGGGTL 182
Query: 587 AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC 646
+ R KA L R T
Sbjct: 183 RLASQRPDLKAAIPLTPWHLNKSWRDIT-------------------------------V 211
Query: 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690
P ++ D + K + + A +E +G H
Sbjct: 212 PTLIIGAEYDTIASVTLHSKPFYNSIPSPTDKAYLELDGASHFA 255
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* Length = 318 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 5e-06
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 567 KADEKRLCITGGSAGGY-TTLAALAFRDTFKAGASL-----YGVADLSMLRAETHKFESR 620
+ + ++G ++GGY +A+ D F G + Y A +
Sbjct: 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCAR-NQYYTSCMYNGYP 65
Query: 621 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPP---DQARKIYKALKENGLP 677
I + K + + + I ++ G D V P +Q + N
Sbjct: 66 SITTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFD-NSAN 124
Query: 678 VALVEYEGEQHGF 690
V+ V G H F
Sbjct: 125 VSYVTTTGAVHTF 137
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} Length = 274 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 20/179 (11%), Positives = 39/179 (21%), Gaps = 45/179 (25%)
Query: 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGY-TTLAALAFRD---TFKAGASLYGVADL 607
+ L + + G SAGGY + T + + YG DL
Sbjct: 78 LRTLTETFQLLNEEI-IQNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDL 136
Query: 608 SMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC--------------------- 646
++ + + + F+ ++
Sbjct: 137 EFIKEPRKLLKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGD 196
Query: 647 ---------------PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690
P D+ VP ++K + +H F
Sbjct: 197 WSAYALSDETLKTFPPCFSTASSSDEEVPFRYSKK----IGRTIPESTFKAVYYLEHDF 251
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Length = 247 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 31/198 (15%), Positives = 67/198 (33%), Gaps = 33/198 (16%)
Query: 514 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 573
++ S+G+ Y G+G E + D + FL G +++
Sbjct: 36 GRFLESKGYTCHAPIY---KGHGVPPEELVHTGP-DDWWQDVMNGYEFLKNKG---YEKI 88
Query: 574 CITGGSAGGYTTLAALAFRDTFKAGASL---YGVADLSMLRAETHKFESRYI------DN 624
+ G S GG +L L + + ++ + + ++ Y +
Sbjct: 89 AVAGLSLGGVFSLK-LGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEE 147
Query: 625 LVGSEKDYYEKSPINFV--------------DKFSCPIILFQGLEDKVVPPDQARKIYKA 670
+ E + ++++P+ + D P + Q D+++ PD A IY
Sbjct: 148 QIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNE 207
Query: 671 LKENGLPVALVEYEGEQH 688
++ + YE H
Sbjct: 208 IESPV--KQIKWYEQSGH 223
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A Length = 322 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 31/172 (18%), Positives = 50/172 (29%), Gaps = 52/172 (30%)
Query: 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA-ALAFRDT----FKAGASLYGVAD 606
V+DC + L+ + R+ I G SAGG T A L ++ L D
Sbjct: 131 VDDCVAAYRALLKTA-GSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVD 189
Query: 607 LSMLRAETHKFESRY-------IDNLVGSEKDYYEK---------SPINFVDKFSCPIIL 650
L++ R R + + + Y SP+ + D
Sbjct: 190 LTLSRWSNSNLADRDFLAEPDTLGEMS----ELYVGGEDRKNPLISPV-YAD-------- 236
Query: 651 FQGLEDKVVPP------------DQARKIYKALKENGLPVALVEYEGEQHGF 690
GL P + + + G+ V L + H F
Sbjct: 237 LSGL-----PEMLIHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDMPHVF 283
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} Length = 208 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 3e-05
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 638 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690
+ + + P ++ QG +D+VVP +Q + + PV V G H F
Sbjct: 143 FASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISS---PVEFVVMSGASHFF 192
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 5e-05
Identities = 30/173 (17%), Positives = 51/173 (29%), Gaps = 18/173 (10%)
Query: 443 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-G 501
+ D S + F G A Y P N ++ P +V G
Sbjct: 53 TQEWDKTFPLSAKVEHRKVTFANR-YGITLAADLYLPKNR-----GGDRLPAIVIGGPFG 106
Query: 502 PTSEARGILNLSIQYWTSRGWAFVDVNY---GGSTGYGREFRERLLGRWGIVDVNDCCSC 558
E L Q RG+ + + G S G R ++ D +
Sbjct: 107 AVKEQS--SGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVA------SPDINTEDFSAA 158
Query: 559 ATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLR 611
F+ + + +R+ + G G L A+A KA + ++
Sbjct: 159 VDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMS 211
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 7e-05
Identities = 23/127 (18%), Positives = 35/127 (27%), Gaps = 24/127 (18%)
Query: 569 DEKRLCITGGSAGGYTTL-AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 627
+ R+ I G S GG + A +L S + L
Sbjct: 116 KKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFAL-----------------SSF---LNK 155
Query: 628 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687
+ Y N V + G D++V A + LK G+ +
Sbjct: 156 ASAVYQALQKSNGVLP---ELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVY 212
Query: 688 HGFRKAE 694
H K E
Sbjct: 213 HELSKTE 219
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} Length = 263 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 29/149 (19%), Positives = 44/149 (29%), Gaps = 13/149 (8%)
Query: 567 KADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNL 625
+ ++ I G S GGY LA + F AS G E+ S
Sbjct: 113 TSKREKTFIAGLSMGGYGCFK-LALTTNRFSHAASFSGALSFQNFSPESQNLGSPAYWRG 171
Query: 626 VGSEKDYYEKSPINFVDKFSC-----PIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 680
V E + SP + + + G +D + K LK+ G V
Sbjct: 172 VFGEIRDWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLYE--ANNLAVKNLKKLGFDVTY 229
Query: 681 VEYEGEQHGFRKAENIKFTLEQQMVFFAR 709
G H + + LE +
Sbjct: 230 SHSAGT-HEW---YYWEKQLEVFLTTLPI 254
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 Length = 262 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 9e-05
Identities = 39/226 (17%), Positives = 59/226 (26%), Gaps = 51/226 (22%)
Query: 467 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW--AF 524
G YYP ++ + +V S G + I L S+G+
Sbjct: 35 ASGFGGGTIYYPT------STADGTFGAVVISPGFTAYQ-SSIAWLG-PRLASQGFVVFT 86
Query: 525 VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 584
+D N R ++ D + D RL + G S GG
Sbjct: 87 IDTNTTLDQPDSR--------GRQLLSALD--YLTQRSSVRTRVDATRLGVMGHSMGGGG 136
Query: 585 TLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF 644
+L A R + KA L G + +
Sbjct: 137 SLEAAKSRTSLKAAIPLTGW-------------------------------NTDKTWPEL 165
Query: 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690
P ++ D V P K + L A +E G H
Sbjct: 166 RTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFT 211
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 Length = 226 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 9e-05
Identities = 25/221 (11%), Positives = 55/221 (24%), Gaps = 36/221 (16%)
Query: 479 PSNPIYQASPEEKPPLLVKSHG-GPTSEARGILNLSIQYWTSRGWAFVD--VNYGGSTGY 535
++Q + P+L+ HG G +L L+ + V V G +
Sbjct: 25 MMKHVFQKGKDTSKPVLLLLHGTG--GNELDLLPLAEIVDSEASVLSVRGNVLENGMPRF 82
Query: 536 GREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA-ALAFRD 593
R E + ++ + K D + G S G + + +
Sbjct: 83 FRRLAEGIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYEN 142
Query: 594 TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQG 653
K + + + + + + G
Sbjct: 143 ALKGAVLHHP----------------------------MVPRRGMQLANLAGKSVFIAAG 174
Query: 654 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694
D + ++ ++ L+ V + H E
Sbjct: 175 TNDPICSSAESEELKVLLENANANVTMHWENRG-HQLTMGE 214
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A Length = 322 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 48/170 (28%)
Query: 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA-ALAFRDT----FKAGASLYGVAD 606
V D + +L+ G + L I+G SAGG LA ++ RD + + AD
Sbjct: 131 VEDGVAAYRWLLDQG-FKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWAD 189
Query: 607 LSMLRAETHKFESRYIDNLVGSEK-----DYY---------EKSPINFVDKFSCPIILFQ 652
++ D +V Y SP F + +
Sbjct: 190 MTCTNDSFKTRAEA--DPMVAPGGINKMAARYLNGADAKHPYASPN-FAN--------LK 238
Query: 653 GLEDKVVPP------------DQARKIYKALKENGLPVALVEYEGEQHGF 690
GL PP D + K+ K +G+ L ++ H +
Sbjct: 239 GL-----PPLLIHVGRDEVLLDDSIKLDAKAKADGVKSTLEIWDDMIHVW 283
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Length = 695 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 553 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 611
+D + A +LV KRL I GGS GG AA+ R + + A + D M+R
Sbjct: 507 DDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLD--MVR 564
Query: 612 AETHKFES 619
H F S
Sbjct: 565 --YHLFGS 570
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* Length = 218 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 29/126 (23%), Positives = 36/126 (28%), Gaps = 24/126 (19%)
Query: 569 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 628
D R+ + G S GG G GV LS Y +
Sbjct: 104 DASRIFLAGFSQGGAVVFHTAFINWQGPLG----GVIALS-----------TYA----PT 144
Query: 629 EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688
D E S P + G D VV R ++ LK G+ V EY H
Sbjct: 145 FGDELELSASQQ----RIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYPMG-H 199
Query: 689 GFRKAE 694
E
Sbjct: 200 EVLPQE 205
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 Length = 251 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 30/127 (23%)
Query: 569 DEKRLCITGGSAGGYTTLA-ALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 627
+ G S G + + F A ++
Sbjct: 139 QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHP------------------------ 174
Query: 628 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687
P K + +++ G D + P + + ++LK G V V + G
Sbjct: 175 ----LIPFEPKISPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPGG- 229
Query: 688 HGFRKAE 694
H R E
Sbjct: 230 HEIRSGE 236
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} Length = 326 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 27/175 (15%), Positives = 52/175 (29%), Gaps = 51/175 (29%)
Query: 552 VNDCCSCATFLVGSGK---ADEKRLCITGGSAGGYTTLAA---LAFRDTFKAGASL---- 601
+ + + ++ + +++ G SAG LA L RD ++
Sbjct: 138 IEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGA--MLALASALWLRDKHIRCGNVIAIL 195
Query: 602 --YGVADL-----SMLRAETHKFESR-----YIDNLVGSEKDYYEK--SPINFVDKFSCP 647
YG+ L L +R Y + +++D N
Sbjct: 196 LWYGLYGLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNNDL----- 250
Query: 648 IILFQGLEDKVVPP------------DQARKIYKALKENGLPVALVEYEGEQHGF 690
+ + PP D +R +++ L+ + P Y G H F
Sbjct: 251 ---TRDV-----PPCFIASAEFDPLIDDSRLLHQTLQAHQQPCEYKMYPGTLHAF 297
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} Length = 209 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694
+ L D +VP + L+++G + + E H + E
Sbjct: 151 HVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESSLG-HQLTQEE 197
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 Length = 763 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 6e-04
Identities = 45/298 (15%), Positives = 93/298 (31%), Gaps = 71/298 (23%)
Query: 438 FKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVK 497
VV ++SP L + L + E+ + ++ + P ++ ++ P++ K
Sbjct: 201 LPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDK 260
Query: 498 SHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG---STGYGREFRERLLGRWGIVDVND 554
+ T LN Y+ +RG+A + V G S G +
Sbjct: 261 APYRFTHGWTYSLN---DYFLTRGFASIYVAGVGTRSSDG--------FQTSGDYQQIYS 309
Query: 555 CCSCATFLVGSGKAD--------------EKRLCITGGSAGGYTTLAALAFR-DTFKAGA 599
+ +L G +A ++ +TG S G A + +
Sbjct: 310 MTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELIL 369
Query: 600 SLYGVADL-----------------------------------------SMLRAETHKFE 618
+ G++ + +
Sbjct: 370 AEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEM 429
Query: 619 SRYIDNLVGSEKDYY-EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG 675
+ +D G ++ +++ + DK +++ GL+D V P+QA +KAL E
Sbjct: 430 TAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPEGH 487
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* Length = 268 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 45/244 (18%)
Query: 476 YYPPSNPIYQASPEEKPPLLVKSHGGP---------TSEARGILNLSIQYWTSRGWAFVD 526
Y PP S ++K +L HG A I + I + V
Sbjct: 51 YLPP-----GYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVT 105
Query: 527 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 586
N + G G + + + + + V D + I G S GG +
Sbjct: 106 PN-TNAAGPGIADGYENFTKDLLNSLIPYI-ESNYSV---YTDREHRAIAGLSMGGGQSF 160
Query: 587 -AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 645
L D F + + T+ E + D + +
Sbjct: 161 NIGLTNLDKFAYIGPISAAPN-------TYPNERLFPDGGKAAREKLK------------ 201
Query: 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 705
+ + G D ++ +++++ N + +G H F K L +
Sbjct: 202 -LLFIACGTNDSLIGF--GQRVHEYCVANNINHVYWLIQGGGHDF---NVWKPGLWNFLQ 255
Query: 706 FFAR 709
Sbjct: 256 MADE 259
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} Length = 377 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 9e-04
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE-YEGEQHGFRKAENIKFTLEQQMV 705
P++L D+ VP A Y + ++ V + + H + F L++Q+
Sbjct: 309 PLLLVGTKGDRDVPYAGAEMAYHSFRKYSDFVWIKSVSDALDHV----QAHPFVLKEQVD 364
Query: 706 FFARVVG 712
FF +
Sbjct: 365 FFKQFER 371
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 729 | |||
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.93 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.92 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.92 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.92 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.9 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.9 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.9 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.9 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.9 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.9 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.9 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.9 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.9 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.89 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.89 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.89 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.89 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.89 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.89 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.89 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.89 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.88 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.88 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.88 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.87 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.87 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.87 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.87 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.87 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.87 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.87 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.87 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.87 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.87 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.87 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.87 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.86 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.86 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.86 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.86 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.86 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.86 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.86 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.86 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.86 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.85 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.85 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.85 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.85 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.85 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.85 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.84 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.84 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.84 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.84 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.84 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.84 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.84 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.83 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.83 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.82 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.82 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.82 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.82 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.82 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.82 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.82 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.82 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.81 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.81 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.81 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.81 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.81 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.81 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.81 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.8 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.8 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.8 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.8 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.8 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.79 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.79 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.79 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.79 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.79 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.78 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.78 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.78 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.78 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.78 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.77 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.77 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.77 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.77 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.76 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.76 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.76 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.76 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.75 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.75 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.75 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.75 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.75 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.74 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.74 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.74 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.74 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.74 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.74 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.74 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.74 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.74 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.74 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.74 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.74 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.74 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.73 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.73 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.73 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.73 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.73 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.73 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.73 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.73 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.73 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.72 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.72 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.72 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.72 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.72 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.72 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.72 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.72 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.71 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.71 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.71 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.71 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.71 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.71 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.71 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.7 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.7 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.7 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.7 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.7 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.7 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.7 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.69 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.69 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.69 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.68 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.68 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.68 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.68 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.68 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.68 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.68 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.68 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.68 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.68 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.68 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.68 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.68 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.67 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.67 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.67 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.66 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.65 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.65 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.65 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.65 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.65 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.64 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.64 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.64 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.64 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.64 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.64 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.64 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.64 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.64 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.64 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.63 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.63 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.63 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.62 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.61 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.61 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.61 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.61 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.61 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.61 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.6 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.6 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.6 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.59 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.59 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.58 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.58 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.58 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.56 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.56 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.55 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.55 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.54 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.53 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.52 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.52 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.52 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.52 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.5 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.5 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.5 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.24 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.49 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.49 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.43 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.43 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.43 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.42 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.41 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.4 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.38 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.38 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.37 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.37 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.37 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.34 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.32 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.32 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.31 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.31 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.29 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.28 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.28 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.28 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.27 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.26 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.25 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.25 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.24 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.23 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.22 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.22 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.22 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.2 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.17 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.17 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.17 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 99.14 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.14 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.13 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.13 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 99.12 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.12 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.11 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.1 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.09 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 99.08 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.07 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.07 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.07 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.06 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.05 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.05 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.04 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 99.03 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.02 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.02 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.02 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.02 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.02 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.01 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.01 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.01 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.0 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.0 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 98.99 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.99 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.98 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.98 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.97 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 98.97 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.96 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.95 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.95 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.94 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.94 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.93 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.93 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.92 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.92 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.91 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.91 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.9 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.9 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.9 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.89 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.89 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.89 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.89 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.89 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.88 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.88 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.88 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.87 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 98.87 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.87 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.86 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.86 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.85 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.84 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.84 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.84 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.83 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.83 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.83 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.82 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.82 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.82 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.81 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.81 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.81 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.8 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.8 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.8 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.79 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.79 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.78 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.78 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.78 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 98.77 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.77 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.76 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.76 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.75 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.75 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.75 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.75 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.74 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.74 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.73 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.73 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.73 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.73 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.72 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.72 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.72 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.71 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.71 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.71 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.71 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.71 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.7 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.7 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.7 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.69 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.69 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.69 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.68 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.67 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.67 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.66 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.66 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.66 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.65 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.65 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.64 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.64 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.63 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.63 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.62 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.61 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.61 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.6 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.59 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.59 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.57 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.57 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.56 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.55 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.55 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.55 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.55 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.53 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.53 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.53 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.51 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.5 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.5 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.5 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.49 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.49 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.48 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.46 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.45 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.45 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.44 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.44 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.42 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.42 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.41 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.4 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.4 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.39 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.39 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.39 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.38 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.38 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.38 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.38 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.38 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.37 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.36 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.36 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.35 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.35 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.35 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.35 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.34 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.34 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.34 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.34 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.32 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.31 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.28 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.27 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.27 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.25 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.25 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.25 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.24 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.24 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.23 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.22 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.22 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.2 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 98.19 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.18 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.18 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.17 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.16 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.15 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.14 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.14 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.14 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.12 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.11 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.11 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.1 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.1 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.09 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.08 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.07 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.06 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.03 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.01 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.01 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.96 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.93 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.92 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.9 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.89 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.86 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.83 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.8 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.78 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.77 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 97.77 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.76 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.74 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.72 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.69 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.67 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.66 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.65 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.63 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.61 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.58 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.58 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.56 |
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-69 Score=626.47 Aligned_cols=637 Identities=34% Similarity=0.634 Sum_probs=528.2
Q ss_pred ccCCCCCCCCcCCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC
Q 004816 68 ITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG 147 (729)
Q Consensus 68 ~~~~~~~~~~~lt~e~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~ 147 (729)
+++|||+|++|+|++.+......+..|+++ ++.++|+..+++++++..||....+ ++.++|+..+.+++..+++|++
T Consensus 3 ~~~~~g~w~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~ 79 (662)
T 3azo_A 3 STAPYGAWQSPIDAALVASRSGRPACVGAV-GDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSG 79 (662)
T ss_dssp EECCTTCCCCSCCHHHHHHTCSCCEEEEEE-TTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCC
T ss_pred ccCCCcCCCCCCCHHHHhhcCCccceeEEc-CCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCC
Confidence 578999999999999999987888999999 8899999988777889999987444 5788888877788888999999
Q ss_pred ceEEEE----CCE-EEEEECCCCcEEEEeCC--CCCCCCeecCCCCCC-CceeeecceecCCCCEEEEEEeccCC-CCCC
Q 004816 148 GAFRIF----GDT-VIFSNYKDQRLYKHSID--SKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQ-DALN 218 (729)
Q Consensus 148 ~~~~~~----~~~-i~~~~~~~~~l~~~d~~--~~~~~~~~lt~~~~~-~~~~~~~~~~SPdG~~l~~~~~~~~~-~~~~ 218 (729)
..+.++ ++. |+|....+.+||+++++ ++ ++.++|+..... ....+..++|||||++|+|++.+... .+..
T Consensus 80 ~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~-~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 80 FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGG-AVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTC-CCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred ccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCC-CCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 887554 678 99998777899999997 21 457888873110 13677889999999999999875311 1112
Q ss_pred cceEEEEEEcCC------CceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeee-eEEec
Q 004816 219 STTEIVAIALNG------QNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVA 290 (729)
Q Consensus 219 ~~~~l~~~dl~~------g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~-~~~~~ 290 (729)
...+||++++++ ++.++|+ .+......++|||||++|+|.+++.++++|...+||++|++.+|.... ..+..
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred ceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 346899999999 8889998 777788899999999999999988888888889999999983352212 33444
Q ss_pred CCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEE
Q 004816 291 GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC 370 (729)
Q Consensus 291 ~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~ 370 (729)
+.. ..+..+.|||||+++|.++. .+..+||++|+++++.+.++........+.|+++...+.|. +++.+++
T Consensus 239 ~~~----~~~~~~~~spdg~l~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~----~~~~~~~ 309 (662)
T 3azo_A 239 GPE----EAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL----ANGLIAV 309 (662)
T ss_dssp ETT----BCEEEEEECTTSCEEEEECT-TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC----TTSCEEE
T ss_pred CCC----ceEcceEECCCCeEEEEECC-CCCeEEEEEECCCCceeecccccccccCccccccCceEeEe----CCCEEEE
Confidence 333 45578999999998888877 67789999999899999998777677789999888888887 4566777
Q ss_pred EEEECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCc
Q 004816 371 SYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTL 449 (729)
Q Consensus 371 ~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~ 449 (729)
...+ +..+||.+++++++.+.|+.+...+..+ +.+++.+++.+++.+.+.++|++++++++.++|+ ......
T Consensus 310 ~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~------~~~~~~ 382 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG------ARHTDP 382 (662)
T ss_dssp EEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE------SCCCCS
T ss_pred EEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee------cCCccc
Confidence 8777 9999999999999999998877777777 7888999999999999999999999999876554 222344
Q ss_pred cCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecC
Q 004816 450 KYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY 529 (729)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~ 529 (729)
+....+..++.+.+... +|..++++++.|++..+.++++++.|+||++||+++......|...++.|+++||.|+.+|+
T Consensus 383 ~~~~~~~~~~~~~~~~~-dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 461 (662)
T 3azo_A 383 VDPAYYPEPQIRTFTAP-DGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNY 461 (662)
T ss_dssp SCGGGSCCCEEEEEECT-TSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEEEEC
T ss_pred CCccccCcceEEEEEcC-CCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEEEECC
Confidence 55566777899999987 89999999999987322222356789999999998777666788889999999999999999
Q ss_pred CCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhH
Q 004816 530 GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSM 609 (729)
Q Consensus 530 rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~ 609 (729)
||++++|+++.......++..+++|+.+++++|++++.+|++|++|+|||+||++++.++.+|++|+++|+.+|+.++..
T Consensus 462 rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~v~~~~~~~~~~ 541 (662)
T 3azo_A 462 GGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVSTDVYACGTVLYPVLDLLG 541 (662)
T ss_dssp TTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCCCCSEEEEESCCCCHHH
T ss_pred CCCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhCcCceEEEEecCCccCHHH
Confidence 99999999999887788888889999999999999988999999999999999999998888999999999999999877
Q ss_pred Hhh-hcchhhhhhhhhhcC----ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 610 LRA-ETHKFESRYIDNLVG----SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 610 ~~~-~~~~~~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
+.. ....+...+....++ +.+.|...+|+.+++++++|+|++||++|.+||++++.+++++|+..|++++++++|
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 621 (662)
T 3azo_A 542 WADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFE 621 (662)
T ss_dssp HHTTCSCGGGTTHHHHHTCCTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHTTSCCCEEEEEET
T ss_pred HhcccccchhhHhHHHHhCCCccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 655 333444444443333 456788899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHHHhCCCCCCCCCCceeccC
Q 004816 685 GEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADEIIPIKIDN 727 (729)
Q Consensus 685 ~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~~ 727 (729)
+++|++...++..+.++.+++||.++|+..++. +|+++|+|
T Consensus 622 ~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~--~~~~~~~~ 662 (662)
T 3azo_A 622 GEGHGFRRKETMVRALEAELSLYAQVFGVEVAG--VPLLKLGE 662 (662)
T ss_dssp TCCSSCCSHHHHHHHHHHHHHHHHHHTTCCCCS--SCCCCCBC
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHhCCCCCC--CCccccCC
Confidence 999998877788899999999999999854443 88988886
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-55 Score=510.88 Aligned_cols=587 Identities=14% Similarity=0.129 Sum_probs=424.2
Q ss_pred CcCCHHHHhcc--CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC--ceEEE
Q 004816 77 SPLTADVVSGA--SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRI 152 (729)
Q Consensus 77 ~~lt~e~i~~~--~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~--~~~~~ 152 (729)
.++|+|+++.. .....++.|+|++.+++.. ++...+|.. . +|+.+.++... ... .+.-.. ..|++
T Consensus 3 ~~~tl~~~~~~~~~~~~~~~~w~~dg~~~~~~-----~~~i~~~~~--~-~~~~~~~~~~~-~~~--~~~~~~~~~~~Sp 71 (740)
T 4a5s_A 3 KTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQ-----ENNILVFNA--E-YGNSSVFLENS-TFD--EFGHSINDYSISP 71 (740)
T ss_dssp EECCHHHHHHTCSCCCCCCEEECSSSEEEEEE-----TTEEEEEET--T-TCCEEEEECTT-TTT--TCCSCCCEEEECT
T ss_pred CceeHHHHhcCcccccccccEECCCCcEEEEc-----CCcEEEEEC--C-CCceEEEEech-hhh--hhcccccceEECC
Confidence 46899999987 2234689999943444433 355455544 3 23445554332 110 011011 23455
Q ss_pred ECCEEEEEECC--------CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 153 FGDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 153 ~~~~i~~~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+++.|+|.... .+.+|++|+.+ ++.++|+.. ......++|||||++|+|+.+ .+||
T Consensus 72 dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~--~~~~~l~~~----~~~~~~~~~SPdG~~la~~~~----------~~i~ 135 (740)
T 4a5s_A 72 DGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLITEERI----PNNTQWVTWSPVGHKLAYVWN----------NDIY 135 (740)
T ss_dssp TSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCC----CTTEEEEEECSSTTCEEEEET----------TEEE
T ss_pred CCCEEEEEECCeeeEEEccceEEEEEECCC--CcEEEcccC----CCcceeeEECCCCCEEEEEEC----------CeEE
Confidence 66688887652 15799999998 888888875 234678899999999999964 4699
Q ss_pred EEEcCCCceEEeeeCCC-------------------eeeeeeeCCCCCeEEEEEecCCCCC-------------------
Q 004816 225 AIALNGQNIQVLVSGSD-------------------FYAFPRMDPRGERMAWIEWHHPNMP------------------- 266 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~~~-------------------~~~~~~~SPDG~~la~~~~~~~~~~------------------- 266 (729)
++++++|+.++|+.+.. ....++|||||++|||.+.+....+
T Consensus 136 ~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (740)
T 4a5s_A 136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (740)
T ss_dssp EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred EEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCccee
Confidence 99999999999975332 1234899999999999986654211
Q ss_pred ---------CCCcEEEEEEecCC---CCe-eeeEEec-----CCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEE
Q 004816 267 ---------WDKAELWVGYISEN---GDV-YKRVCVA-----GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKW 327 (729)
Q Consensus 267 ---------~~~~~l~~~d~~~~---g~~-~~~~~~~-----~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~ 327 (729)
....+|+++|++ + ++. ....+.. +.+ .++..+.|||||+ +++..++.++...|+++
T Consensus 216 ~~yp~~G~~~~~~~l~v~d~~-~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~ 290 (740)
T 4a5s_A 216 VPYPKAGAVNPTVKFFVVNTD-SLSSVTNATSIQITAPASMLIGD----HYLCDVTWATQERISLQWLRRIQNYSVMDIC 290 (740)
T ss_dssp EECCBTTSCCCEEEEEEEETT-SCCSSSCCCEEEECCCHHHHTSC----EEEEEEEEEETTEEEEEEEESSTTEEEEEEE
T ss_pred ecCCCCcCcCCeeEEEEEECC-CCCCCCcceEEEecCCccCCCCC----eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEE
Confidence 122379999998 6 521 1123322 233 6678899999999 77777664566789999
Q ss_pred EcCCCe-------EEEeecc--Cccc-----cCCcccccCcceeeeeecCCCCEEE-EEEEECCeEEEEEEECCCCceEe
Q 004816 328 IESNNE-------VLAIYSL--DAEF-----SRPLWVFGINSYEIIQSHGEKNLIA-CSYRQNGRSYLGILDDFGHSLSL 392 (729)
Q Consensus 328 d~~~g~-------~~~l~~~--~~~~-----~~~~w~~~~~~~~~l~~~~~~~~l~-~~s~~~g~~~ly~~d~~~g~~~~ 392 (729)
|+++|+ .+.++.+ ...+ ..+.|++ |++.|+ +.++++|..+||+++.++++.++
T Consensus 291 d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp------------DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL------------DGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp EEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT------------TSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred ECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC------------CCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 999987 2333211 1111 1345554 888877 88889999999999999999999
Q ss_pred eccCCcceEEe-eeeCCEEEEEEeC--C-CCCceEEEEEcCCCcce-eeee----------eEEecCCCC----------
Q 004816 393 LDIPFTDIDNI-TLGNDCLFVEGAS--G-VEPSSVAKVTLDDHKLK-AVDF----------KVVWSSSPD---------- 447 (729)
Q Consensus 393 lt~~~~~v~~~-~~~~~~~~~~~~~--~-~~~~~ly~~d~~~~~~~-~lt~----------~~~~~~~~~---------- 447 (729)
||.+.+.+..+ ..+++.++|.++. . .....||++++++++.+ +||. ...++....
T Consensus 359 lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~ 438 (740)
T 4a5s_A 359 ITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG 438 (740)
T ss_dssp SCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS
T ss_pred cccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC
Confidence 99998888776 4556665555543 1 22346999998877643 5551 122221110
Q ss_pred -C--cc----------------------CCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCC
Q 004816 448 -T--LK----------------------YKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP 502 (729)
Q Consensus 448 -~--~~----------------------~~~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~ 502 (729)
+ .+ ....+..++.+++ .. +|..++++++.|++.. +.+++|+||++||++
T Consensus 439 ~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~-dg~~l~~~~~~P~~~~----~~~~~P~vv~~HGg~ 512 (740)
T 4a5s_A 439 LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFI-IL-NETKFWYQMILPPHFD----KSKKYPLLLDVYAGP 512 (740)
T ss_dssp SCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEEEEEEE-EE-TTEEEEEEEEECTTCC----TTSCEEEEEECCCCT
T ss_pred CCEEEEEECCCCcEEEEeccChhhhhhhhhccCCccEEEEE-cc-CCeEEEEEEEeCCCCC----CCCCccEEEEECCCC
Confidence 0 00 0011233445556 44 8999999999998733 356789999999998
Q ss_pred CCCcc-ccch-hhhHHHh-hCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcC
Q 004816 503 TSEAR-GILN-LSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGS 579 (729)
Q Consensus 503 ~~~~~-~~~~-~~~~~la-~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S 579 (729)
+.... ..|. .....++ ++||+|+++|+||++++|..+.......++..+++|+.+++++|.+++.+|++||+|+|||
T Consensus 513 ~~~~~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S 592 (740)
T 4a5s_A 513 CSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWS 592 (740)
T ss_dssp TCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred cccccccccCcCHHHHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEEC
Confidence 76432 2222 2344555 5899999999999999999999988888988899999999999998888999999999999
Q ss_pred hHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhh--cCChhhhhhcCcccccCCCCC-CEEEEEeCC
Q 004816 580 AGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL--VGSEKDYYEKSPINFVDKFSC-PIILFQGLE 655 (729)
Q Consensus 580 ~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~-PvL~i~G~~ 655 (729)
|||++|+.++. +|++|+++|+.+|+.++..+.. .+...++... ..+.+.|...+|+.+++++++ |+|++||++
T Consensus 593 ~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~ 669 (740)
T 4a5s_A 593 YGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDS---VYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTA 669 (740)
T ss_dssp HHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBH---HHHHHHHCCSSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETT
T ss_pred HHHHHHHHHHHhCCCceeEEEEcCCccchHHhhh---HHHHHHcCCCCccccHHHHHhCCHHHHHhcCCCCcEEEEEcCC
Confidence 99999999998 9999999999999999865422 2233344333 335677889999999999996 999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCCCCC
Q 004816 656 DKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDV 716 (729)
Q Consensus 656 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 716 (729)
|.+||++++.+++++|+++|++++++++|+++|.+...+.....++.+.+||.++|+...+
T Consensus 670 D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~~ 730 (740)
T 4a5s_A 670 DDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLPAA 730 (740)
T ss_dssp CSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTCCSHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred CCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCcCCCCccHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999877778889999999999999985433
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-53 Score=493.04 Aligned_cols=587 Identities=17% Similarity=0.220 Sum_probs=430.2
Q ss_pred CCcCCHHHHhcc----CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcc------------
Q 004816 76 KSPLTADVVSGA----SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAV------------ 138 (729)
Q Consensus 76 ~~~lt~e~i~~~----~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~------------ 138 (729)
..+||+++++.. ...+..++||| |+.+++...+..+.....|+.++..+ |+.+.++......
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 98 (741)
T 2ecf_A 20 AEKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS-GQTRLLVDSKVVLPGTETLSDEEKA 98 (741)
T ss_dssp --CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT-CCEEEEECGGGTC------------
T ss_pred cccccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC-CceeEccchhhcccccccccchhhh
Confidence 478999999953 34577999999 89999987533223355677777663 3555555321000
Q ss_pred ---ccccc---ccCCceEEEECCEEEEEECCCCcEEEEeCCCCCC---CCeecCCCCCCCceeeecceecCCCCEEEEEE
Q 004816 139 ---RTTAQ---EYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDS---SPLPITPDYGEPLVSYADGIFDPRFNRYVTVR 209 (729)
Q Consensus 139 ---~~~~~---~~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~---~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~ 209 (729)
+.++. ......|+++++.|++... ++||++|+++ + ..++++.. ......++|||||++|+|+.
T Consensus 99 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~--~~i~~~d~~~--~~~~~~~~l~~~----~~~~~~~~~SPDG~~la~~~ 170 (741)
T 2ecf_A 99 RRERQRIAAMTGIVDYQWSPDAQRLLFPLG--GELYLYDLKQ--EGKAAVRQLTHG----EGFATDAKLSPKGGFVSFIR 170 (741)
T ss_dssp --------CCEESCCCEECTTSSEEEEEET--TEEEEEESSS--CSTTSCCBCCCS----SSCEEEEEECTTSSEEEEEE
T ss_pred hhhhhhhccccCcceeEECCCCCEEEEEeC--CcEEEEECCC--CCcceEEEcccC----CcccccccCCCCCCEEEEEe
Confidence 00000 1123445666778888875 7899999998 7 77788765 34567889999999999987
Q ss_pred eccCCCCCCcceEEEEEEcCCCceEEeeeCCCe-----------------eeeeeeCCCCCeEEEEEecCCCCC------
Q 004816 210 EDRRQDALNSTTEIVAIALNGQNIQVLVSGSDF-----------------YAFPRMDPRGERMAWIEWHHPNMP------ 266 (729)
Q Consensus 210 ~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~-----------------~~~~~~SPDG~~la~~~~~~~~~~------ 266 (729)
+ .+||++|+++++.++++..... ...++|||||++|+|.+.+....+
T Consensus 171 ~----------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~ 240 (741)
T 2ecf_A 171 G----------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE 240 (741)
T ss_dssp T----------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred C----------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence 4 3699999999988888764322 356899999999999976542111
Q ss_pred -------------------CCCcEEEEEEecCC-CCeeee----------------------------------------
Q 004816 267 -------------------WDKAELWVGYISEN-GDVYKR---------------------------------------- 286 (729)
Q Consensus 267 -------------------~~~~~l~~~d~~~~-g~~~~~---------------------------------------- 286 (729)
.....|+++|++ + ++...+
T Consensus 241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 241 VYADRTDVIEQRYPAAGDANVQVKLGVISPA-EQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp ECSSCEEEEEEECCBTTSCCCEEEEEEECSS-TTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEET
T ss_pred CCCCcccceEeecCCCCCCCCeeEEEEEECC-CCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEEC
Confidence 012256666665 4 322110
Q ss_pred ------EEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCC-cccccCcceeee
Q 004816 287 ------VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-LWVFGINSYEII 359 (729)
Q Consensus 287 ------~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~-~w~~~~~~~~~l 359 (729)
.++......|......+.|+|||++++.+.. .+..+||.++.+++ .+.|+.....+... .|++
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-------- 389 (741)
T 2ecf_A 320 ASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSER-TGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-------- 389 (741)
T ss_dssp TTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECT-TSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET--------
T ss_pred CCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecC-CCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC--------
Confidence 0111111011112357899999997777776 67889999998777 77777544333333 2443
Q ss_pred eecCCCCEEEEEEEECC--eEEEEEEECCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCccee
Q 004816 360 QSHGEKNLIACSYRQNG--RSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA 435 (729)
Q Consensus 360 ~~~~~~~~l~~~s~~~g--~~~ly~~d~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~ 435 (729)
+++.|++.+..++ ..+||.++.+++..+.|+. ...+..+ +++++.+++..++...|.++|+++.+++..+.
T Consensus 390 ----dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~ 464 (741)
T 2ecf_A 390 ----KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIAT 464 (741)
T ss_dssp ----TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEEC
T ss_pred ----CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEE
Confidence 7888988887766 7889999988887888886 3334444 67788888888999999999999987766544
Q ss_pred eeeeEEecCCCC---C-ccCCC--CCCCcEEEEeeccCCC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc-
Q 004816 436 VDFKVVWSSSPD---T-LKYKS--YFSLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR- 507 (729)
Q Consensus 436 lt~~~~~~~~~~---~-~~~~~--~~~~~~~~~~~~~~dG-~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~- 507 (729)
|+ .+.. . .+.+. .+..++.+++... +| ..++++++.|.+.. ++++.|+||++||+++....
T Consensus 465 l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~l~~~~~~P~~~~----~~~~~p~vv~~hG~~~~~~~~ 533 (741)
T 2ecf_A 465 LV------ENDLADPKHPYARYREAQRPVEFGTLTAA-DGKTPLNYSVIKPAGFD----PAKRYPVAVYVYGGPASQTVT 533 (741)
T ss_dssp SS------CCCSSSTTSTTHHHHTTCCCEEEEEEECT-TSSCEEEEEEECCSSCC----TTSCEEEEEECCCSTTCCSCS
T ss_pred ec------cCcccccccchhhhhccCCCcEEEEEEcC-CCCEEEEEEEEeCCCCC----CCCCcCEEEEEcCCCCccccc
Confidence 43 2111 0 23333 5677899999997 89 99999999997632 24567999999998765421
Q ss_pred ccch-----hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHH
Q 004816 508 GILN-----LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG 582 (729)
Q Consensus 508 ~~~~-----~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG 582 (729)
..|. ..++.|+++||.|+++|+||+++++..+.......++..+++|+.+++++|.+++.+|.+|++|+|||+||
T Consensus 534 ~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG 613 (741)
T 2ecf_A 534 DSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGG 613 (741)
T ss_dssp SCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHH
T ss_pred ccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHH
Confidence 2343 57889999999999999999999999888877778887889999999999999888889999999999999
Q ss_pred HHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCCh
Q 004816 583 YTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPP 661 (729)
Q Consensus 583 ~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~ 661 (729)
++++.++. +|++|+++|+.+|+.++..+.. .+...++.......+.|...+|+..+.++++|+|++||++|.++|+
T Consensus 614 ~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~ 690 (741)
T 2ecf_A 614 YMTLMLLAKASDSYACGVAGAPVTDWGLYDS---HYTERYMDLPARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVLF 690 (741)
T ss_dssp HHHHHHHHHCTTTCSEEEEESCCCCGGGSBH---HHHHHHHCCTGGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSCT
T ss_pred HHHHHHHHhCCCceEEEEEcCCCcchhhhcc---ccchhhcCCcccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCCH
Confidence 99999988 8999999999999988753321 1122222222223566778899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 662 DQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 662 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+++.+++++|+..+++++++++|+++|.+..... .+.++.+++||+++|+
T Consensus 691 ~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~-~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 691 TNSTSLMSALQKRGQPFELMTYPGAKHGLSGADA-LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEETTCCSSCCHHHH-HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCceEEEEECCCCCCCCCCch-hHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999865433 7889999999999986
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-53 Score=480.68 Aligned_cols=537 Identities=19% Similarity=0.167 Sum_probs=415.2
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECC---CC
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK---DQ 165 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~ 165 (729)
.+..+.++| |+.++|...+ +|+..||..+ +|+.++++..... ......+++++++|.... +.
T Consensus 23 ~~~~~~~~~DG~~la~~s~~---~g~~~lw~~~---~g~~~~lt~~~~~--------~~~~~~~spd~~l~~~~~~~g~~ 88 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFS---EGSVNAYLYD---GGETVKLNREPIN--------SVLDPHYGVGRVILVRDVSKGAE 88 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEE---TTEEEEEEEE---TTEEEECCSSCCS--------EECEECTTCSEEEEEEECSTTSC
T ss_pred chheeecCCCCCeEEEEEcc---CCceeEEEEc---CCCcEeeeccccc--------ccccccCCCCeEEEEeccCCCCc
Confidence 356788999 9999998753 4677899863 2466777654310 112233344578887654 22
Q ss_pred --cEEEEeC--CCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC
Q 004816 166 --RLYKHSI--DSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD 241 (729)
Q Consensus 166 --~l~~~d~--~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~ 241 (729)
+||.+++ ++ ...+++... .. ...+|||||+.++++..... .+.++|+++++.++++....
T Consensus 89 ~~~l~~~~~~~~g---~~~~l~~~~---~~--~~~~~s~dg~~~~~~s~~~~--------~~~l~d~~~g~~~~l~~~~~ 152 (582)
T 3o4h_A 89 QHALFKVNTSRPG---EEQRLEAVK---PM--RILSGVDTGEAVVFTGATED--------RVALYALDGGGLRELARLPG 152 (582)
T ss_dssp CEEEEEEETTSTT---CCEECTTSC---SB--EEEEEEECSSCEEEEEECSS--------CEEEEEEETTEEEEEEEESS
T ss_pred ceEEEEEeccCCC---ccccccCCC---Cc--eeeeeCCCCCeEEEEecCCC--------CceEEEccCCcEEEeecCCC
Confidence 7899998 54 344776552 22 34589999999888866442 24466999999999987655
Q ss_pred eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCc
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF 321 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~ 321 (729)
..+.|||||++|++.+.+..+ ..+||++|++ +|+. ..+ .+.. .....++|||||+.++.+.. .+.
T Consensus 153 --~~~~~spDG~~la~~~~~~~~----~~~i~~~d~~-~g~~--~~l-~~~~----~~~~~~~~SpDG~~l~~~~~-~~~ 217 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGGG----RVSLFTSNLS-SGGL--RVF-DSGE----GSFSSASISPGMKVTAGLET-ARE 217 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEETT----EEEEEEEETT-TCCC--EEE-CCSS----CEEEEEEECTTSCEEEEEEC-SSC
T ss_pred --ceEEECCCCCEEEEEEEcCCC----CeEEEEEcCC-CCCc--eEe-ecCC----CccccceECCCCCEEEEccC-CCe
Confidence 679999999999998865432 2569999998 6765 233 3333 45578999999993335555 677
Q ss_pred eEEEEEEcCCCeEEEeeccCccccCCc--------ccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 322 WNLHKWIESNNEVLAIYSLDAEFSRPL--------WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~~~~~~~~~~~--------w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
.+|+++|+++++.+.+......+..+. |++ |+ .++++...++..+||.+ |+...
T Consensus 218 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp------------dg-~~~~~~~~~g~~~l~~~----g~~~~- 279 (582)
T 3o4h_A 218 ARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP------------DG-RLAVVARREGRSAVFID----GERVE- 279 (582)
T ss_dssp EEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECT------------TS-CEEEEEEETTEEEEEET----TEEEC-
T ss_pred eEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcC------------CC-cEEEEEEcCCcEEEEEE----CCeec-
Confidence 899999999998883333333343444 554 66 88999999999999876 44433
Q ss_pred ccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCccCC---CCCCCcEEEEeeccCCC
Q 004816 394 DIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYK---SYFSLPELIEFPTEVPG 469 (729)
Q Consensus 394 t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dG 469 (729)
.....+..+ .. ++++++..++...|.++|++++++ +.++| .+.+ ..+...+.++++.. +|
T Consensus 280 -~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~-~~~~l------------~~~~~~~~~~~~~~~~~~~~~-~g 343 (582)
T 3o4h_A 280 -APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE-PLLEG------------GLPEDLRRSIAGSRLVWVESF-DG 343 (582)
T ss_dssp -CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC-EEECC------------CCCHHHHHTEEEEEEEEEECT-TS
T ss_pred -cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC-ceEEE------------ecCCccccccCcceEEEEECC-CC
Confidence 223456666 34 788889999999999999998765 54333 1222 44567789999998 89
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 549 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~ 549 (729)
..++++++.|++. .++.|+||++||+++......|...++.|+++||.|+++|+||++++|.++.......++.
T Consensus 344 ~~i~~~~~~p~~~------~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~~~~~ 417 (582)
T 3o4h_A 344 SRVPTYVLESGRA------PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCG 417 (582)
T ss_dssp CEEEEEEEEETTS------CSSEEEEEEECSSSSCCCCSSCCHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTT
T ss_pred CEEEEEEEcCCCC------CCCCcEEEEECCCcccccccccCHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhhhhccc
Confidence 9999999999762 2378999999999877767778889999999999999999999999999999888888888
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhc-C
Q 004816 550 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLV-G 627 (729)
Q Consensus 550 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~-~ 627 (729)
..++|+.++++++.+++.+| +++|+|||+||++++.++. +|++|+++|+.+|+.++..+..........+....+ .
T Consensus 418 ~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (582)
T 3o4h_A 418 GELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGG 495 (582)
T ss_dssp HHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccchhHHHHHHHcCc
Confidence 88999999999999997776 9999999999999999998 799999999999999988766544333322333333 3
Q ss_pred ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 628 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 628 ~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
+.+.+...+|+.++.++++|+|++||++|.++|++++++++++|+.+|++++++++|+++|.+...+...+.++.+++||
T Consensus 496 ~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl 575 (582)
T 3o4h_A 496 SREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFL 575 (582)
T ss_dssp CHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCCBHHHHHHHHHHHHHHH
T ss_pred CHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcCHHHHHHHHHHHHhCCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999887788889999999999
Q ss_pred HHHhCC
Q 004816 708 ARVVGH 713 (729)
Q Consensus 708 ~~~l~~ 713 (729)
+++|++
T Consensus 576 ~~~l~~ 581 (582)
T 3o4h_A 576 ATQRER 581 (582)
T ss_dssp HHHHTC
T ss_pred HHHcCC
Confidence 999973
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-51 Score=477.17 Aligned_cols=578 Identities=15% Similarity=0.140 Sum_probs=423.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC--
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ-- 165 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 165 (729)
.+...|. | |+++||+.... ...+..||+.+..+ ++.+.|++...-....-...+...|+++++.|+|.....+
T Consensus 74 ~~~~~p~--~dG~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~ 149 (710)
T 2xdw_A 74 PKYSCHF--KKGKRYFYFYNTG-LQNQRVLYVQDSLE-GEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 149 (710)
T ss_dssp CEECCCE--EETTEEEEEEECS-SCSSCEEEEESSTT-SCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCS
T ss_pred ccCCCCE--EECCEEEEEEEcC-CceEEEEEEEcCCC-CCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCc
Confidence 3455665 6 99999998744 23445889887652 3555554321000000012234456666778998876544
Q ss_pred --cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC-------CCCcceEEEEEEcCCCce--E
Q 004816 166 --RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-------ALNSTTEIVAIALNGQNI--Q 234 (729)
Q Consensus 166 --~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~-------~~~~~~~l~~~dl~~g~~--~ 234 (729)
+||++|+++ ++..+++.. ...+..++|||||+.|+|++.+.... ......+||++++.+++. +
T Consensus 150 ~~~i~v~d~~t--g~~~~~~~~----~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~ 223 (710)
T 2xdw_A 150 WVTIKFMKVDG--AKELPDVLE----RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI 223 (710)
T ss_dssp CEEEEEEETTT--TEEEEEEEE----EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE
T ss_pred eEEEEEEECCC--CCCCccccc----CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce
Confidence 899999998 776665433 23356789999999999998654310 012246799999988763 3
Q ss_pred EeeeC---CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCC------CCeeeeEEecCCCCCccccccCcee
Q 004816 235 VLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN------GDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 235 ~lt~~---~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~------g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
.+... ..+..++.|||||++|++.+..... ...+||++|++ + +......+....+ . ....|
T Consensus 224 ~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~~~l~~~d~~-~~~~~~~~~~~~~~l~~~~~-----~-~~~~~ 293 (710)
T 2xdw_A 224 LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD---PVNRLWYCDLQ-QESNGITGILKWVKLIDNFE-----G-EYDYV 293 (710)
T ss_dssp EEECCTTCTTCEEEEEECTTSCEEEEEEECSSS---SCCEEEEEEGG-GSSSSSCSSCCCEEEECSSS-----S-CEEEE
T ss_pred EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC---CccEEEEEECc-ccccccCCccceEEeeCCCC-----c-EEEEE
Confidence 44333 3345689999999999998853321 15689999998 5 4321233433332 1 12369
Q ss_pred CCCCc-EEEEEecCCCceEEEEEEcCCCe---EEEeeccCc--cccCCcccccCcceeeeeecCCCCEEEEEEEECCeEE
Q 004816 306 SSKGE-LFFVTDRKNGFWNLHKWIESNNE---VLAIYSLDA--EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 379 (729)
Q Consensus 306 spDG~-l~~~~~~~~g~~~l~~~d~~~g~---~~~l~~~~~--~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ 379 (729)
++||+ |+|.++.......|+++|+++++ .+.|+.+.. .+. .+.+. +++.++++..+++..+
T Consensus 294 s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~---------~~~~~----~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE---------WVACV----RSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE---------EEEEE----TTTEEEEEEEETTEEE
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE---------EEEEE----cCCEEEEEEEECCEEE
Confidence 99999 88888763447889999998874 466664321 121 23333 5678999999999999
Q ss_pred EEEEECCCCc-eEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCc--ceeeeeeEEecCCCCCccCCCC
Q 004816 380 LGILDDFGHS-LSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK--LKAVDFKVVWSSSPDTLKYKSY 454 (729)
Q Consensus 380 ly~~d~~~g~-~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~--~~~lt~~~~~~~~~~~~~~~~~ 454 (729)
|+++++.+|+ .+.|+.+...+..+ .++++.+++..++..+|.++|++|+++++ .+.+.+ .....++...
T Consensus 361 l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~------~~~~~~~~~~ 434 (710)
T 2xdw_A 361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFRE------VTVKGIDASD 434 (710)
T ss_dssp EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEE------CCCTTCCGGG
T ss_pred EEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeee------cccCCcCccc
Confidence 9999995554 67787765556555 44667899999999999999999999887 544432 1112233333
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCC
Q 004816 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGST 533 (729)
Q Consensus 455 ~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~ 533 (729)
+ .++.+.+.+. ||..++++++.|++.. ..++.|+||++||+++....+.|....+.|++ +||.|+++|+||++
T Consensus 435 ~-~~~~~~~~~~-dg~~i~~~~~~p~~~~----~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g 508 (710)
T 2xdw_A 435 Y-QTVQIFYPSK-DGTKIPMFIVHKKGIK----LDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGG 508 (710)
T ss_dssp E-EEEEEEEECT-TSCEEEEEEEEETTCC----CSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSS
T ss_pred c-EEEEEEEEcC-CCCEEEEEEEecCCCC----CCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCC
Confidence 3 5688999988 9999999999998732 24678999999999887777778776778888 99999999999999
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA 612 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~ 612 (729)
++|..|.......++...++|+.+++++|++++.+|++||+|+|+|+||++++.++. +|++|+++|+.+|+.++..+..
T Consensus 509 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~ 588 (710)
T 2xdw_A 509 EYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHK 588 (710)
T ss_dssp TTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGG
T ss_pred CCChHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccc
Confidence 999999988777777778999999999999999899999999999999999999998 8999999999999998765533
Q ss_pred hcch--hhhhhhhhhcCC---hhhhhhcCcccccC-----CCCC-CEEEEEeCCCCCCChHHHHHHHHHHHhC-------
Q 004816 613 ETHK--FESRYIDNLVGS---EKDYYEKSPINFVD-----KFSC-PIILFQGLEDKVVPPDQARKIYKALKEN------- 674 (729)
Q Consensus 613 ~~~~--~~~~~~~~~~~~---~~~~~~~sp~~~~~-----~i~~-PvL~i~G~~D~~vp~~~~~~~~~~l~~~------- 674 (729)
.... +...+.. . .+ .+.+...+|+.++. ++++ |+|++||++|.+||+.++.+++++|+..
T Consensus 589 ~~~~~~~~~~~g~-~-~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 666 (710)
T 2xdw_A 589 YTIGHAWTTDYGC-S-DSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQ 666 (710)
T ss_dssp STTGGGGHHHHCC-T-TSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTC
T ss_pred cCCChhHHHhCCC-C-CCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccCC
Confidence 2110 1111100 0 11 23456789999998 7886 9999999999999999999999999987
Q ss_pred CCCEEEEEECCCCcccCCc-ccHHHHHHHHHHHHHHHhCC
Q 004816 675 GLPVALVEYEGEQHGFRKA-ENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 675 g~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~fl~~~l~~ 713 (729)
|.++++++++++||++..+ ....+.++.+++||.++|+.
T Consensus 667 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 706 (710)
T 2xdw_A 667 NNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 706 (710)
T ss_dssp CSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 8899999999999998765 34568889999999999973
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=475.67 Aligned_cols=574 Identities=14% Similarity=0.134 Sum_probs=416.9
Q ss_pred cCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC----c
Q 004816 91 LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ----R 166 (729)
Q Consensus 91 ~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~ 166 (729)
..-|... |+++||..... ...+..+||.... ++...|++...-........++.+|+++++.|+|..+..| .
T Consensus 81 ~~~p~~~-g~~~y~~~~~~-~~~~~~~~r~~~~--~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~ 156 (693)
T 3iuj_A 81 EGAPFRE-GRYHYFFKNDG-LQNQNVLWRQQEG--KPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWRE 156 (693)
T ss_dssp ECCCEEE-TTEEEEEEECS-SCSSCEEEEECTT--SCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred CCCCEEE-CCEEEEEEEcC-CCceeEEEEeCCC--CCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEE
Confidence 3344433 89999987644 3445578886544 3444454321000111112233455566778999876544 7
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCC----CCCCcceEEEEEEcCCCce--EEeeeCC
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ----DALNSTTEIVAIALNGQNI--QVLVSGS 240 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~----~~~~~~~~l~~~dl~~g~~--~~lt~~~ 240 (729)
|+++|+++ ++..+.+.. ......++|| ||+.|+|++.+... .......+||++++.++.. +.+....
T Consensus 157 i~v~dl~t--g~~~~~~~~----~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~ 229 (693)
T 3iuj_A 157 IHLMDVES--KQPLETPLK----DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI 229 (693)
T ss_dssp EEEEETTT--CSEEEEEEE----EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCS
T ss_pred EEEEECCC--CCCCccccC----CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecC
Confidence 99999998 765554332 2335788999 99999999876430 0012346899999987643 5555443
Q ss_pred C----eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 241 D----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 241 ~----~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
+ +..++.|||||++|++...... ...+||++|++ ++......+....+ ....+ |++||+ |+|.+
T Consensus 230 ~~~~~~~~~~~~SpDg~~l~~~~~~~~----~~~~i~~~d~~-~~~~~~~~l~~~~~-----~~~~~-~~~~g~~l~~~t 298 (693)
T 3iuj_A 230 PAQHHRYVGATVTEDDRFLLISAANST----SGNRLYVKDLS-QENAPLLTVQGDLD-----ADVSL-VDNKGSTLYLLT 298 (693)
T ss_dssp GGGCCSEEEEEECTTSCEEEEEEESSS----SCCEEEEEETT-STTCCCEEEECSSS-----SCEEE-EEEETTEEEEEE
T ss_pred CCCCeEEEEEEEcCCCCEEEEEEccCC----CCcEEEEEECC-CCCCceEEEeCCCC-----ceEEE-EeccCCEEEEEE
Confidence 3 4678999999999998874432 23689999998 55322234444332 11223 788888 98888
Q ss_pred ecCCCceEEEEEEcCCCeE---EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEe
Q 004816 316 DRKNGFWNLHKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL 392 (729)
Q Consensus 316 ~~~~g~~~l~~~d~~~g~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~ 392 (729)
+......+|+++|+++++. +.|+++..... .|++ +++.|++...++|..+|++++++++..+.
T Consensus 299 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~------------~g~~lv~~~~~~g~~~l~~~d~~g~~~~~ 364 (693)
T 3iuj_A 299 NRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS------------GSGYLFAEYMVDATARVEQFDYEGKRVRE 364 (693)
T ss_dssp CTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE------------ETTEEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred CCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE------------ECCEEEEEEEECCeeEEEEEECCCCeeEE
Confidence 8734468999999988654 66765443221 3443 77889999999999999999999888888
Q ss_pred eccCCc-ceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCccCCCCCCCcEEEEeeccCCC
Q 004816 393 LDIPFT-DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG 469 (729)
Q Consensus 393 lt~~~~-~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG 469 (729)
|+.+.. .+..+ ..+++.+++..++..+|..+|.+|+++++.+.|+. .. ..+++..+ ..+.+.+.+. +|
T Consensus 365 l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~------~~-~~~~~~~~-~~~~~~~~~~-dg 435 (693)
T 3iuj_A 365 VALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA------SA-APFKPEDY-VSEQRFYQSK-DG 435 (693)
T ss_dssp ECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC------CC-SSCCGGGE-EEEEEEEECT-TS
T ss_pred eecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe------CC-CCcChhhC-eeEEEEEecC-CC
Confidence 876543 44444 44677888889999999999999999888655442 21 22444333 5788999988 99
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 549 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~ 549 (729)
..++++++.|++.. ..++.|+||++||+++......|....+.|+++||+|+.+|+||++++|..|.......++.
T Consensus 436 ~~i~~~l~~p~~~~----~~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 511 (693)
T 3iuj_A 436 TRVPLIISYRKGLK----LDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQ 511 (693)
T ss_dssp CEEEEEEEEESSCC----CSSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTH
T ss_pred cEEEEEEEecCCCC----CCCCccEEEEECCCCCcCCCCccCHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhhcCC
Confidence 99999999998632 25678999999999888778888888889999999999999999999999999988777777
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcch--hhhhhhhhhc
Q 004816 550 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHK--FESRYIDNLV 626 (729)
Q Consensus 550 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~--~~~~~~~~~~ 626 (729)
..++|+.+++++|++++.+|++||+|+|+|+||++++.++. +|++|+++|+.+|+.|+..+...... +...+ ....
T Consensus 512 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-g~p~ 590 (693)
T 3iuj_A 512 NVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDY-GTSA 590 (693)
T ss_dssp HHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGGSGGGGGCHHHH-CCTT
T ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhccCCCchhHHHHc-CCcc
Confidence 78999999999999999999999999999999999999998 89999999999999998655331111 11111 1111
Q ss_pred CC---hhhhhhcCcccccCC-CCCC-EEEEEeCCCCCCChHHHHHHHHHHHhC---CCCEEEEEECCCCcccCCc-ccHH
Q 004816 627 GS---EKDYYEKSPINFVDK-FSCP-IILFQGLEDKVVPPDQARKIYKALKEN---GLPVALVEYEGEQHGFRKA-ENIK 697 (729)
Q Consensus 627 ~~---~~~~~~~sp~~~~~~-i~~P-vL~i~G~~D~~vp~~~~~~~~~~l~~~---g~~~~~~~~~~~gH~~~~~-~~~~ 697 (729)
.. .+.+...+|+.++.+ +++| +|++||++|.+||+.++.+++++|+++ |+++++++++++||++..+ +...
T Consensus 591 ~~~~~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~ 670 (693)
T 3iuj_A 591 DSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLI 670 (693)
T ss_dssp SCHHHHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHHCCSSSCEEEEEEC-------CHHHHHH
T ss_pred CHHHHHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCChhHHHHHHHHHHhhCCCCCCEEEEEeCCCCCCCcccHHHHH
Confidence 11 124567899999999 8988 999999999999999999999999997 5899999999999998765 5667
Q ss_pred HHHHHHHHHHHHHhCCC
Q 004816 698 FTLEQQMVFFARVVGHF 714 (729)
Q Consensus 698 ~~~~~~~~fl~~~l~~~ 714 (729)
+.++.+++||.++|+..
T Consensus 671 ~~~~~~~~fl~~~l~~~ 687 (693)
T 3iuj_A 671 EQSADIYAFTLYEMGYR 687 (693)
T ss_dssp HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 88889999999999844
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-51 Score=476.72 Aligned_cols=568 Identities=15% Similarity=0.077 Sum_probs=412.1
Q ss_pred cCceEEcCCCcEEEEeecCCCCCceEEEEcCC---CCCC--CCcccCCCCCccccccccc---CCceEE-EECCEEEEEE
Q 004816 91 LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPA---KAGD--EPSDITPKEYAVRTTAQEY---GGGAFR-IFGDTVIFSN 161 (729)
Q Consensus 91 ~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~---~~~g--~~~~l~~~~~~~~~~~~~~---~~~~~~-~~~~~i~~~~ 161 (729)
.+.|... |+++||+..... +.+..+++.+. + ++ ..+.+++ + +..+..+++ +...|+ ++++.|+|..
T Consensus 119 ~~~p~~~-g~~~yy~~~~~g-~~~~vl~r~~~~~~~-~~~~~~~vlld-~-n~~a~~~~~~~~~~~~~S~PDG~~lAy~~ 193 (751)
T 2xe4_A 119 MSAPYVY-GKYRYYTREVKG-KPYKIYCRVFTDKEP-GDVAAEEVIID-V-NQVAEGKAFCDVMEVKPAPPEHDLVAFSV 193 (751)
T ss_dssp ECCCEEE-TTEEEEEEECTT-CCSCEEEEEETTSCT-TCTTTCEEEEE-H-HHHTTTCSCCEEEEEEECTTTTCEEEEEE
T ss_pred CCCCeEE-CCEEEEEEECCC-CceeEEEEEcCCCCC-CCCcCCEEEec-h-hHhccCCCeEEEeeeEecCCCCCEEEEEE
Confidence 4556645 999999976432 33456777764 3 22 2333332 2 333322333 334455 5566899988
Q ss_pred CCCC----cEEEEeCCCCCC-CCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce--E
Q 004816 162 YKDQ----RLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI--Q 234 (729)
Q Consensus 162 ~~~~----~l~~~d~~~~~~-~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~--~ 234 (729)
...| +||++|+++ + + .++..- ......++|||||+.|+|++.+.... ..+||++++.+++. +
T Consensus 194 ~~~G~~~~~l~v~dl~~--g~~--~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~----~~~v~~~~lgt~~~~~~ 262 (751)
T 2xe4_A 194 DMSGNEVYTIEFKRISD--PSQ--TIADKV---SGTNGEIVWGPDHTSLFYVTKDETLR----ENKVWRHVMGKLQSEDV 262 (751)
T ss_dssp ESSSSSCEEEEEEETTC--TTC--CCCCCE---EEECSCCEECSSTTEEEEEEECTTCC----EEEEEEEETTSCGGGCE
T ss_pred eCCCCceEEEEEEECCC--CCE--eCCccc---cCceeeEEEecCCCEEEEEEECCCCC----CCEEEEEECCCCchhcE
Confidence 7654 599999998 6 5 232210 12346899999999999998754222 36899999988753 3
Q ss_pred Eeee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeee-eEEecCCCCCccccccCceeCCC---
Q 004816 235 VLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKWSSK--- 308 (729)
Q Consensus 235 ~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~-~~~~~~~~~~~~~~~~~~~wspD--- 308 (729)
.+.. +..+..++.|||||++|+|..... ...+||++|++ ++.... .+.+.... ..+.|++|
T Consensus 263 lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~-----~~~~l~~~d~~-~~~~~~~~~~l~~~~-------~~~~~s~~~~~ 329 (751)
T 2xe4_A 263 CLYEEHNPLFSAFMYKAADTNTLCIGSQSP-----ETAEVHLLDLR-KGNAHNTLEIVRPRE-------KGVRYDVQMHG 329 (751)
T ss_dssp EEEECCCTTCEEEEEECTTSSEEEEEEECS-----SCEEEEEEESS-SCTTCCCEEESSCCC-------TTCCEEEEEET
T ss_pred EEEecCCCceEEEEEECCCCCEEEEEecCC-----CCceEEEEECC-CCCCCceeEEeecCC-------CCceEEEeeee
Confidence 4433 334667899999999999998543 35789999998 542111 13332222 23456565
Q ss_pred Cc-EEEEEecC-CCceEEEEEEcCC-CeEEE-eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 309 GE-LFFVTDRK-NGFWNLHKWIESN-NEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 309 G~-l~~~~~~~-~g~~~l~~~d~~~-g~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
|+ |+|.++.. .+..+|+++++++ ++.+. |+....+..-. ++.+ .++.|++...++|..+|++++
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~-------~~~~-----~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFME-------SIAV-----RSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEE-------EEEE-----CSSEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEE-------EEEE-----ECCEEEEEEEeCCEEEEEEEe
Confidence 77 99998873 4678999999876 45555 55433221111 2222 567899999999999999999
Q ss_pred C-------CCCc-eEeeccCCc-ceEEe------eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCc
Q 004816 385 D-------FGHS-LSLLDIPFT-DIDNI------TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTL 449 (729)
Q Consensus 385 ~-------~~g~-~~~lt~~~~-~v~~~------~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~ 449 (729)
+ ++++ .+.|+.+.. .+..+ ..+++.+++..++...|.++|.+++++++.+.|++..+ ...
T Consensus 398 l~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~-----~~~ 472 (751)
T 2xe4_A 398 ADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREV-----GGG 472 (751)
T ss_dssp CCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEECCC-----CTT
T ss_pred cccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEecccc-----ccC
Confidence 6 6777 788865433 23344 23567889999999999999999999888766553211 112
Q ss_pred cCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecC
Q 004816 450 KYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY 529 (729)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~ 529 (729)
++...+ .++.+.+.+. ||..++++++.|++.. +.++.|+||++||+++......|....+.|+++||+|+.+|+
T Consensus 473 ~~~~~~-~~~~~~~~s~-dG~~i~~~l~~p~~~~----~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 546 (751)
T 2xe4_A 473 FDAANY-KVERRFATAP-DQTKIPLSVVYHKDLD----MSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHI 546 (751)
T ss_dssp CCGGGE-EEEEEEEECT-TCCEEEEEEEEETTSC----TTSCCCEEEECCCCTTCCCCCCCCGGGHHHHTTTCEEEEECC
T ss_pred CCccce-EEEEEEEECC-CCcEEEEEEEcCCCCC----CCCCccEEEEECCCCCcCCCCcchHHHHHHHhCCcEEEEEee
Confidence 333333 4788999988 9999999999997632 246789999999998877777788788899999999999999
Q ss_pred CCCCCCchhHHH-hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh
Q 004816 530 GGSTGYGREFRE-RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL 607 (729)
Q Consensus 530 rGs~g~g~~~~~-~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~ 607 (729)
||++++|+.|.. .....++...++|+.+++++|++++.+|++||+|+|+|+||++++.++. +|++|+++|+.+|+.|+
T Consensus 547 RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~~~d~ 626 (751)
T 2xe4_A 547 RGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDV 626 (751)
T ss_dssp TTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCH
T ss_pred CCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCCcchH
Confidence 999999999998 7777777788999999999999999999999999999999999999998 89999999999999998
Q ss_pred hHHhhhc--chhhhhhhhhhcC---Ch---hhhhhcCcccccCCCCCC-EEEEEeCCCCCCChHHHHHHHHHHHhCC---
Q 004816 608 SMLRAET--HKFESRYIDNLVG---SE---KDYYEKSPINFVDKFSCP-IILFQGLEDKVVPPDQARKIYKALKENG--- 675 (729)
Q Consensus 608 ~~~~~~~--~~~~~~~~~~~~~---~~---~~~~~~sp~~~~~~i~~P-vL~i~G~~D~~vp~~~~~~~~~~l~~~g--- 675 (729)
..+.... ......+ ..++ ++ +.+...+|+.+++++++| +|++||++|.+||+.++.+++++|+.++
T Consensus 627 ~~~~~~~~~~~~~~~~--~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii~G~~D~~vp~~~~~~~~~~L~~~~~~~ 704 (751)
T 2xe4_A 627 MTTMCDPSIPLTTGEW--EEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKTDN 704 (751)
T ss_dssp HHHHTCTTSTTHHHHT--TTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEEEEEEETTCSSSCTHHHHHHHHHHHHHCCSC
T ss_pred HhhhcccCcccchhhH--HHcCCCCCHHHHHHHHhcChhhhhccCCCCceeEEeeCCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 7653211 1111111 1122 22 245678999999999997 9999999999999999999999999984
Q ss_pred CCEEEEEECCCCcccCCcc-cHHHHHHHHHHHHHHHhC
Q 004816 676 LPVALVEYEGEQHGFRKAE-NIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 676 ~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~fl~~~l~ 712 (729)
..+.+++++++||++.... ...+.++.+++||.++|+
T Consensus 705 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~ 742 (751)
T 2xe4_A 705 NEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLK 742 (751)
T ss_dssp CCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhC
Confidence 4567778899999986543 455677789999999997
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-50 Score=466.94 Aligned_cols=583 Identities=16% Similarity=0.136 Sum_probs=418.0
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC----C
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD----Q 165 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~ 165 (729)
....|... |+++||+..+.. ..+..||+.+.. +++.+.|++...-....-...+...|+++++.|+|..... .
T Consensus 71 ~~~~p~~d-G~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~ 147 (695)
T 2bkl_A 71 SVSTPSRR-NGRFFYVRTHKD-KEKAILYWRQGE-SGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEA 147 (695)
T ss_dssp EECCCEEE-TTEEEEEEECTT-CSSCEEEEEEST-TSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCC
T ss_pred cCCCCEEE-CCEEEEEEEcCC-CeEEEEEEEcCC-CCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceE
Confidence 44455533 999999987542 346688988765 2466777653210000001223445666677899887644 3
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC----CCCcceEEEEEEcCCCce--EEeeeC
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD----ALNSTTEIVAIALNGQNI--QVLVSG 239 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~----~~~~~~~l~~~dl~~g~~--~~lt~~ 239 (729)
+|+++|+++ ++..+..... ...+..++|||||+.|+|++.+.... ......+||++++.+++. +.+...
T Consensus 148 ~i~v~dl~t--g~~~~~~~~~---~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~ 222 (695)
T 2bkl_A 148 VLHVIDVDS--GEWSKVDVIE---GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER 222 (695)
T ss_dssp EEEEEETTT--CCBCSSCCBS---CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC
T ss_pred EEEEEECCC--CCCcCCcccC---cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec
Confidence 799999998 6544111110 11236789999999999998754310 012346799999998763 445433
Q ss_pred ---CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEe
Q 004816 240 ---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 240 ---~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~ 316 (729)
.....++.|||||++|++.+.+.. ...+||+++.. +++. ..+....+ ....+.| +||++++.++
T Consensus 223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~----~~~~l~~~~~~-~~~~--~~l~~~~~-----~~~~~~~-~~g~l~~~s~ 289 (695)
T 2bkl_A 223 TGDPTTFLQSDLSRDGKYLFVYILRGW----SENDVYWKRPG-EKDF--RLLVKGVG-----AKYEVHA-WKDRFYVLTD 289 (695)
T ss_dssp CCCTTCEEEEEECTTSCCEEEEEEETT----TEEEEEEECTT-CSSC--EEEEECSS-----CCEEEEE-ETTEEEEEEC
T ss_pred CCCCEEEEEEEECCCCCEEEEEEeCCC----CceEEEEEcCC-CCce--EEeecCCC-----ceEEEEe-cCCcEEEEEC
Confidence 245678999999999999886542 24679999765 5554 33443332 2244566 6766666666
Q ss_pred cCCCceEEEEEEcCCCe---EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 317 RKNGFWNLHKWIESNNE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 317 ~~~g~~~l~~~d~~~g~---~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
...+...|+++|+++++ .+.|+.... .+. ..++.+ .++.++++...++..+|+.++++++..+.|
T Consensus 290 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~--l~~~~~-----~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 290 EGAPRQRVFEVDPAKPARASWKEIVPEDS-----SAS--LLSVSI-----VGGHLSLEYLKDATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp TTCTTCEEEEEBTTBCSGGGCEEEECCCS-----SCE--EEEEEE-----ETTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred CCCCCCEEEEEeCCCCCccCCeEEecCCC-----CCe--EEEEEE-----ECCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence 53457899999998775 366664321 111 012333 345788899999999999999987777777
Q ss_pred ccC-CcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCccCCCCCCCcEEEEeeccCCCe
Q 004816 394 DIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQ 470 (729)
Q Consensus 394 t~~-~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~ 470 (729)
..+ ...+..+ +++++.+++..++..+|.++|++|+++++.+.|++ .. ..++... ..++.+.+.+. +|.
T Consensus 358 ~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~------~~-~~~~~~~-~~~~~~~~~~~-dg~ 428 (695)
T 2bkl_A 358 QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAK------VD-VPMNPEQ-YQVEQVFYASK-DGT 428 (695)
T ss_dssp CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEE------CC-CSSCGGG-EEEEEEEEECT-TSC
T ss_pred cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec------CC-CCCCHHH-CeEEEEEEECC-CCC
Confidence 654 3344444 45677899999999999999999999988655542 11 1133332 36788999987 999
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcc
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 550 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~ 550 (729)
.++++++.|++.. ..++.|+||++||+++......|....+.|+++||.|+.+|+||++++|..|.......++..
T Consensus 429 ~i~~~~~~p~~~~----~~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~ 504 (695)
T 2bkl_A 429 KVPMFVVHRKDLK----RDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQN 504 (695)
T ss_dssp EEEEEEEEETTCC----CSSCCCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHH
T ss_pred EEEEEEEECCCCC----CCCCccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCC
Confidence 9999999998632 256789999999998887777788778889999999999999999999999988777667777
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcC--
Q 004816 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG-- 627 (729)
Q Consensus 551 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-- 627 (729)
.++|+.+++++|++++.+|++||+|+|+|+||++++.++. +|++|+++|+.+|+.++..+..... ...+.. .++
T Consensus 505 ~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~--~~~~~~-~~g~~ 581 (695)
T 2bkl_A 505 VFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGS--GRTWIP-EYGTA 581 (695)
T ss_dssp HHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTT--GGGGHH-HHCCT
T ss_pred cHHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCC--CcchHH-HhCCC
Confidence 7999999999999999999999999999999999999998 8999999999999998765432110 011111 112
Q ss_pred -Ch---hhhhhcCcccccCCCC--CCEEEEEeCCCCCCChHHHHHHHHHHHh---CCCCEEEEEECCCCcccCCc-ccHH
Q 004816 628 -SE---KDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQARKIYKALKE---NGLPVALVEYEGEQHGFRKA-ENIK 697 (729)
Q Consensus 628 -~~---~~~~~~sp~~~~~~i~--~PvL~i~G~~D~~vp~~~~~~~~~~l~~---~g~~~~~~~~~~~gH~~~~~-~~~~ 697 (729)
++ +.+...+|+.++++++ +|+|++||++|.+||+.++.+++++|++ .|.++++++++++||++..+ ....
T Consensus 582 ~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~ 661 (695)
T 2bkl_A 582 EKPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAI 661 (695)
T ss_dssp TSHHHHHHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTCCSCEEEEEETTCBTTBCSCHHHHH
T ss_pred CCHHHHHHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccCCCCEEEEEeCCCCcCCCCCHHHHH
Confidence 22 3456789999999876 6999999999999999999999999998 67899999999999998653 4566
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCC
Q 004816 698 FTLEQQMVFFARVVGHFDVADEII 721 (729)
Q Consensus 698 ~~~~~~~~fl~~~l~~~~~~~~~~ 721 (729)
+.++.+++||.++|+..+.+..++
T Consensus 662 ~~~~~~~~fl~~~l~~~~~~~~~~ 685 (695)
T 2bkl_A 662 ESSVDLYSFLFQVLDVQGAQGGVA 685 (695)
T ss_dssp HHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHcCCCCCCcchh
Confidence 788899999999998655554444
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-51 Score=475.25 Aligned_cols=588 Identities=13% Similarity=0.114 Sum_probs=413.1
Q ss_pred CCcCCHHHHhcc--CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEE
Q 004816 76 KSPLTADVVSGA--SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI 152 (729)
Q Consensus 76 ~~~lt~e~i~~~--~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (729)
..++|+++++.. .....++.|+| |+.+ +. . .+|. ++.++..+ |+.+.++... .... .......|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~~-~~-~---~dg~--i~~~d~~~-g~~~~~~~~~-~~~~--~~v~~~~~Sp 70 (723)
T 1xfd_A 2 KKKVTVEDLFSEDFKIHDPEAKWISDTEFI-YR-E---QKGT--VRLWNVET-NTSTVLIEGK-KIES--LRAIRYEISP 70 (723)
T ss_dssp CCCCCHHHHTCTTTCCCCCCCCBSSSSCBC-CC-C---SSSC--EEEBCGGG-CCCEEEECTT-TTTT--TTCSEEEECT
T ss_pred CccccHHHHhCCCCcccccccEEcCCCcEE-EE-e---CCCC--EEEEECCC-CcEEEEeccc-cccc--cccceEEECC
Confidence 467999999887 22357899999 6633 32 1 2444 45555542 3555555332 1000 0011234555
Q ss_pred ECCEEEEEECC--------CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 153 FGDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 153 ~~~~i~~~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+++.|++.... .++||++|+++ ++.++|+..... ...+..++|||||++|+|++. .+||
T Consensus 71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~-~~~~~~~~~SPdG~~la~~~~----------~~i~ 137 (723)
T 1xfd_A 71 DREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPEVS-NAKLQYAGWGPKGQQLIFIFE----------NNIY 137 (723)
T ss_dssp TSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCCEECCCTTCC-SCCCSBCCBCSSTTCEEEEET----------TEEE
T ss_pred CCCEEEEEecCccceeecceeeEEEEECCC--CceEeccCCccc-cccccccEECCCCCEEEEEEC----------CeEE
Confidence 56688888653 26899999998 777778764211 123577899999999999975 3699
Q ss_pred EEEcCCCceEEeeeCCC-------------------eeeeeeeCCCCCeEEEEEecCCCC--------------------
Q 004816 225 AIALNGQNIQVLVSGSD-------------------FYAFPRMDPRGERMAWIEWHHPNM-------------------- 265 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~~~-------------------~~~~~~~SPDG~~la~~~~~~~~~-------------------- 265 (729)
++++++++.++++.... ....++|||||++|+|.+.+....
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (723)
T 1xfd_A 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (723)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred EEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceecc
Confidence 99999999888876421 125699999999999998654211
Q ss_pred ------CCCCcEEEEEEecCCCCeeeeEEecCCCC--CccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 266 ------PWDKAELWVGYISENGDVYKRVCVAGFDP--TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 266 ------~~~~~~l~~~d~~~~g~~~~~~~~~~~~~--~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
.....+|+++|++ +++. ...+..... .....+..+.|||||+ +++..++..+...|+++|+++++.+.
T Consensus 218 ~~~~G~~~~~~~l~~~d~~-~~~~--~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~ 294 (723)
T 1xfd_A 218 YPKAGSENPSISLHVIGLN-GPTH--DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK 294 (723)
T ss_dssp CCBTTSCCCEEEEEEEESS-SSCC--CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred CCCCCCCCCeeEEEEEECC-CCce--eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence 1113479999998 6653 122222100 0004556789999999 65555553456789999999998777
Q ss_pred eeccC--ccc----cCCcccccCcceeeeeecCCCCEEEEE-EEECC----eEEEEEEE-CCCCc---eEeeccCCcceE
Q 004816 337 IYSLD--AEF----SRPLWVFGINSYEIIQSHGEKNLIACS-YRQNG----RSYLGILD-DFGHS---LSLLDIPFTDID 401 (729)
Q Consensus 337 l~~~~--~~~----~~~~w~~~~~~~~~l~~~~~~~~l~~~-s~~~g----~~~ly~~d-~~~g~---~~~lt~~~~~v~ 401 (729)
+.... ..+ ..+.|++ |++.|++. +++++ ..+||+++ .++++ .++|+.+.+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~sp------------dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 362 (723)
T 1xfd_A 295 KHEDESEAWLHRQNEEPVFSK------------DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT 362 (723)
T ss_dssp EEEEECSSCCCCCCCCCEECT------------TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred EEEeccCCEEeccCCCceEcC------------CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE
Confidence 65321 111 2455554 78888886 66777 88999999 67777 788887666654
Q ss_pred E---eeeeCCEEEEEEeCCC--CCceEEEEEcCCC-cceeeee---------eEEecCCCC-------------------
Q 004816 402 N---ITLGNDCLFVEGASGV--EPSSVAKVTLDDH-KLKAVDF---------KVVWSSSPD------------------- 447 (729)
Q Consensus 402 ~---~~~~~~~~~~~~~~~~--~~~~ly~~d~~~~-~~~~lt~---------~~~~~~~~~------------------- 447 (729)
. ++++++.+++ .++.+ ....||.++++++ +.+.|+. ...++....
T Consensus 363 ~~~~~spdg~~l~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~ 441 (723)
T 1xfd_A 363 KILAYDEKGNKIYF-LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNT 441 (723)
T ss_dssp EEEEEETTTTEEEE-EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEET
T ss_pred eeeEEcCCCCEEEE-EEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEEC
Confidence 3 2455555554 44444 3455888887664 3444431 122222110
Q ss_pred ---C--c-----------cCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc-c--c
Q 004816 448 ---T--L-----------KYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-R--G 508 (729)
Q Consensus 448 ---~--~-----------~~~~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~-~--~ 508 (729)
. . +....+..++.+.+.+. +| ++.++++.|++.. +.+++|+||++||+++... . +
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~~~~~~P~~~~----~~~~~p~vv~~HG~~~~~~~~~~~ 515 (723)
T 1xfd_A 442 TDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEID-DY-NLPMQILKPATFT----DTTHYPLLLVVDGTPGSQSVAEKF 515 (723)
T ss_dssp TTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEET-TE-EECCBEEBCSSCC----SSSCEEEEEECCCCTTCCCCCCCC
T ss_pred CCCCEEEEeccChhhhhhhhhccCCCceEEEEEcC-Cc-eEEEEEEeCCCCC----CCCccCEEEEEcCCCCccccCccc
Confidence 0 0 01123445667777776 77 9999999998732 3567899999999987632 2 2
Q ss_pred cchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHH
Q 004816 509 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA 588 (729)
Q Consensus 509 ~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~ 588 (729)
.+....+.++++||.|+++|+||++++|..+.......++...++|+.+++++|.+++.+|.+||+|+|||+||++++.+
T Consensus 516 ~~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 595 (723)
T 1xfd_A 516 EVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYI 595 (723)
T ss_dssp CCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHC
T ss_pred cccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHH
Confidence 33356677888999999999999999999988877777877789999999999999887889999999999999999999
Q ss_pred Hh-C----CCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCC-CCEEEEEeCCCCCCChH
Q 004816 589 LA-F----RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPD 662 (729)
Q Consensus 589 ~~-~----~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~ 662 (729)
+. + |++|+++|+.+|+.++..+.. .+...++.......+.+...+|..++.+++ +|+|++||++|.++|++
T Consensus 596 a~~~~~~~p~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~ 672 (723)
T 1xfd_A 596 LPAKGENQGQTFTCGSALSPITDFKLYAS---AFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQ 672 (723)
T ss_dssp CCCSSSTTCCCCSEEEEESCCCCTTSSBH---HHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHH
T ss_pred HHhccccCCCeEEEEEEccCCcchHHhhh---hccHhhcCCccCChhHHHhcChhhHHhhcCCCCEEEEEeCCCCCcCHh
Confidence 98 7 899999999999988754311 111222222222345566778888899999 79999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 663 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 663 ~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
++.+++++|+.+|++++++++|+++|.+...+...+.++.+++||.++|+
T Consensus 673 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 673 HTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 722 (723)
T ss_dssp HHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCCcccccCcchHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999986677788999999999998875
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=464.13 Aligned_cols=575 Identities=16% Similarity=0.166 Sum_probs=410.9
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCC--CCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC--
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKA--GDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ-- 165 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~--~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 165 (729)
...|. | |+++||+..+.. ..+..||+.+... +++.+.|++...-....-...+...|+++++.|+|.....|
T Consensus 111 ~~~p~--pdG~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e 187 (741)
T 1yr2_A 111 FGLPQ--RRGASVFYSWNSGL-MNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD 187 (741)
T ss_dssp ECCCE--EETTEEEEEEECSS-CSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS
T ss_pred cCCCE--EECCEEEEEEEcCC-CeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc
Confidence 34444 6 999999987543 3356889887540 23566665422000000012234456666778999876544
Q ss_pred --cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCC-----CCCCcceEEEEEEcCCCce--EEe
Q 004816 166 --RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-----DALNSTTEIVAIALNGQNI--QVL 236 (729)
Q Consensus 166 --~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~-----~~~~~~~~l~~~dl~~g~~--~~l 236 (729)
+||++|+++ ++....+.. ...+..++|||| +.|+|++.+... .......+||++++.++.. +.+
T Consensus 188 ~~~i~v~dl~t--g~~~~~~~~----~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv 260 (741)
T 1yr2_A 188 WRTVKFVGVAD--GKPLADELK----WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV 260 (741)
T ss_dssp EEEEEEEETTT--CCEEEEEEE----EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE
T ss_pred eEEEEEEECCC--CCCCCccCC----CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE
Confidence 699999998 766554322 233468899999 999999865431 0111236799999988763 344
Q ss_pred eeCC---CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCee-eeEEecCCCCCccccccCceeCCCCc-E
Q 004816 237 VSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCVAGFDPTIVESPTEPKWSSKGE-L 311 (729)
Q Consensus 237 t~~~---~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~-~~~~~~~~~~~~~~~~~~~~wspDG~-l 311 (729)
.... .+..++.|||||++|++...+... ...+||++|++ ++... ...+....+ ....+ |+|||+ |
T Consensus 261 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~l~~~d~~-~~~~~~~~~l~~~~~-----~~~~~-~~~dg~~l 330 (741)
T 1yr2_A 261 FATPELPKRGHGASVSSDGRWVVITSSEGTD---PVNTVHVARVT-NGKIGPVTALIPDLK-----AQWDF-VDGVGDQL 330 (741)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEECTTC---SCCEEEEEEEE-TTEECCCEEEECSSS-----SCEEE-EEEETTEE
T ss_pred eccCCCCeEEEEEEECCCCCEEEEEEEccCC---CcceEEEEECC-CCCCcccEEecCCCC-----ceEEE-EeccCCEE
Confidence 4432 246789999999999998865422 25689999998 66221 234444332 22233 458998 8
Q ss_pred EEEEecCCCceEEEEEEcCC--CeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 312 FFVTDRKNGFWNLHKWIESN--NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~--g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
++.++......+|+++|+++ ++.+.|++..... ..++.+ .++.++++..+++..+||+++++++.
T Consensus 331 ~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~--------l~~~~~-----~~~~lv~~~~~dg~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 331 WFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN--------LESVGI-----AGNRLFASYIHDAKSQVLAFDLDGKP 397 (741)
T ss_dssp EEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE--------EEEEEE-----EBTEEEEEEEETTEEEEEEEETTSCE
T ss_pred EEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe--------EEEEEE-----ECCEEEEEEEECCEEEEEEEeCCCCc
Confidence 88887634478899999988 4667777433111 112233 35678999999999999999998887
Q ss_pred eEeeccC-CcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCccCCCCCCCcEEEEeecc
Q 004816 390 LSLLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE 466 (729)
Q Consensus 390 ~~~lt~~-~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (729)
.+.|+.+ ...+..+ +.+++.+++..++..+|.++|++|+++++.+.|+ . ....++... ...+.+.+.+.
T Consensus 398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~------~-~~~~~~~~~-~~~~~~~~~~~ 469 (741)
T 1yr2_A 398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWE------P-VHLTFDPAD-FRVEQVFYPSK 469 (741)
T ss_dssp EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECS------C-CCCSSCGGG-EEEEEEEEECT
T ss_pred eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe------c-CCCCCChhH-CEEEEEEEEcC
Confidence 7888754 3445555 4567788999999999999999999988754443 2 122233333 36788999987
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC
Q 004816 467 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 546 (729)
Q Consensus 467 ~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~ 546 (729)
||..++++++.|++. .++.|+||++||+++....+.|....+.|+++||.|+++|+||++++|+.|.......
T Consensus 470 -dg~~i~~~~~~p~~~------~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~ 542 (741)
T 1yr2_A 470 -DGTKVPMFIVRRKDA------KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRD 542 (741)
T ss_dssp -TSCEEEEEEEEETTC------CSCCCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGG
T ss_pred -CCCEEEEEEEecCCC------CCCCcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhh
Confidence 999999999999762 3467999999999887777778877888999999999999999999999999877766
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhh
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 625 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 625 (729)
++...++|+.+++++|++++.+|++||+|+|+|+||++++.++. +|++|+++|+.+|+.++..+..... ...+. ..
T Consensus 543 ~~~~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~--~~~~~-~~ 619 (741)
T 1yr2_A 543 KKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTA--GRYWV-DD 619 (741)
T ss_dssp GTHHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTT--GGGGH-HH
T ss_pred cCCCcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCC--CchhH-HH
Confidence 77777999999999999998899999999999999999999998 8999999999999998765432111 00011 11
Q ss_pred cCC------hhhhhhcCcccccCC-CCC-CEEEEEeCCCCCCChHHHHHHHHHHHh---CCCCEEEEEECCCCcccCCc-
Q 004816 626 VGS------EKDYYEKSPINFVDK-FSC-PIILFQGLEDKVVPPDQARKIYKALKE---NGLPVALVEYEGEQHGFRKA- 693 (729)
Q Consensus 626 ~~~------~~~~~~~sp~~~~~~-i~~-PvL~i~G~~D~~vp~~~~~~~~~~l~~---~g~~~~~~~~~~~gH~~~~~- 693 (729)
+++ .+.+...+|+.++.+ +++ |+|++||++|.+||+.++.+++++|+. .|.++++++++++||++..+
T Consensus 620 ~g~~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~gH~~~~~~ 699 (741)
T 1yr2_A 620 YGYPEKEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPI 699 (741)
T ss_dssp HCCTTSHHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCSSCEEEEEC---------CH
T ss_pred cCCCCCHHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCCCCEEEEEeCCCCcCCCCCH
Confidence 121 234567899999997 885 999999999999999999999999999 88999999999999998654
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCC
Q 004816 694 ENIKFTLEQQMVFFARVVGHFDV 716 (729)
Q Consensus 694 ~~~~~~~~~~~~fl~~~l~~~~~ 716 (729)
....+..+.+++||.++++..+.
T Consensus 700 ~~~~~~~~~~~~fl~~~l~~~~~ 722 (741)
T 1yr2_A 700 DKQIEETADVQAFLAHFTGLTPR 722 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcc
Confidence 34467889999999999984443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-49 Score=460.68 Aligned_cols=566 Identities=16% Similarity=0.156 Sum_probs=414.6
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 169 (729)
.+..+.|||++.+++... +. ++.++.. +++.+.++..... .....|+++++.|+|.. +++||+
T Consensus 83 ~v~~~~~spd~~~~~~~~-----~~--i~~~d~~-~~~~~~l~~~~~~-------~~~~~~SpdG~~la~~~--~~~i~v 145 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQ-----GG--LVGFDML-ARKVTYLFDTNEE-------TASLDFSPVGDRVAYVR--NHNLYI 145 (706)
T ss_dssp CCEEEEETTTTEEEEEET-----TE--EEEEETT-TTEEEEEECCTTC-------CTTCEECTTSSEEEEEE--TTEEEE
T ss_pred CceeEEECCCCeEEEEEC-----CE--EEEEECC-CCceEEccCCccc-------ccCCcCCCCCCEEEEEE--CCeEEE
Confidence 467899999755555531 44 4444444 2344555432211 12345777777888874 578999
Q ss_pred EeCCC-----CCCCCeecCCCCCCC-----------ceeeecceecCCCCEEEEEEeccCCC------------------
Q 004816 170 HSIDS-----KDSSPLPITPDYGEP-----------LVSYADGIFDPRFNRYVTVREDRRQD------------------ 215 (729)
Q Consensus 170 ~d~~~-----~~~~~~~lt~~~~~~-----------~~~~~~~~~SPdG~~l~~~~~~~~~~------------------ 215 (729)
+++.+ + +.++++...... ..+...+.|||||++|++.+.+....
T Consensus 146 ~~~~~~~~~~g--~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 146 ARGGKLGEGMS--RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp EECBCTTSCCC--CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred EecCcccccCC--CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 99975 3 355666542110 00136788999999999987432100
Q ss_pred ------CCCcceEEEEEEcCCCceEEeeeC---CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCC-Ceee
Q 004816 216 ------ALNSTTEIVAIALNGQNIQVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DVYK 285 (729)
Q Consensus 216 ------~~~~~~~l~~~dl~~g~~~~lt~~---~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g-~~~~ 285 (729)
.......|+++|+++++.+.+..+ ......+.|||||++|++...++.. ....|+++|++ +| ...
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~---~~~~v~~~d~~-~g~~~~- 298 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ---NECKVNAYDAE-TGRFVR- 298 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS---CEEEEEEEETT-TCCEEE-
T ss_pred eCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC---CeeEEEEEECC-CCceee-
Confidence 011246899999999988777643 2345678999999999998765433 34679999998 67 432
Q ss_pred eEEecCCCCCccccccCceeCC--CCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccC-CcccccCcceeeeeec
Q 004816 286 RVCVAGFDPTIVESPTEPKWSS--KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR-PLWVFGINSYEIIQSH 362 (729)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~wsp--DG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~-~~w~~~~~~~~~l~~~ 362 (729)
.+.......|......+.|+| ||++++.+.. .+..+||.++.+++..+.|+.....+.. ..|++
T Consensus 299 -~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~-~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp----------- 365 (706)
T 2z3z_A 299 -TLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR-DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP----------- 365 (706)
T ss_dssp -EEEEEECSSCCCCCSCCEECTTCSSEEEEEECT-TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-----------
T ss_pred -EEEEccCCCeECccCCceeecCCCCEEEEEEcc-CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-----------
Confidence 222222112212235789999 9996677766 6788999999888888888754433332 34554
Q ss_pred CCCCEEEEEEEECC--eEEEEEEECCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeee
Q 004816 363 GEKNLIACSYRQNG--RSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDF 438 (729)
Q Consensus 363 ~~~~~l~~~s~~~g--~~~ly~~d~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~ 438 (729)
+++.|++.+..++ ..+||.+++++++.+.|+... .+..+ +++++.+++..++...|.++|++++++++.+.++
T Consensus 366 -dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~~~~~- 442 (706)
T 2z3z_A 366 -KGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPES-GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLE- 442 (706)
T ss_dssp -TSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSS-SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCEEEEEE-
T ss_pred -CCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCC-ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCeEeecc-
Confidence 7888888887665 579999999999888887533 34444 5667778888888889999999999888732222
Q ss_pred eEEecCCCCCccCCCCCCCcEEEEeeccCCC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc-ccchh----
Q 004816 439 KVVWSSSPDTLKYKSYFSLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNL---- 512 (729)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG-~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~---- 512 (729)
... .+....+..++.+.+... +| ..++++++.|++.. +++++|+||++||+++.... ..|..
T Consensus 443 -----~~~--~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~P~~~~----~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~ 510 (706)
T 2z3z_A 443 -----AKN--PDTGYAMPEIRTGTIMAA-DGQTPLYYKLTMPLHFD----PAKKYPVIVYVYGGPHAQLVTKTWRSSVGG 510 (706)
T ss_dssp -----CC--------CCCCEEEEEEECT-TSSSEEEEEEECCTTCC----TTSCEEEEEECCCCTTCCCCCSCC----CC
T ss_pred -----ccc--hhhhcCCCCcEEEEEEcC-CCCEEEEEEEEeCCCCC----CCCCccEEEEecCCCCceeeccccccCchH
Confidence 111 233345667788999987 88 89999999998732 24678999999998776532 23433
Q ss_pred hhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C
Q 004816 513 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F 591 (729)
Q Consensus 513 ~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~ 591 (729)
+++.|+++||.|+++|+||+++++..+.......++..+++|+.+++++|.+++.+|.+|++|+|||+||++++.++. +
T Consensus 511 ~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 590 (706)
T 2z3z_A 511 WDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTH 590 (706)
T ss_dssp HHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHS
T ss_pred HHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhC
Confidence 678999999999999999999999998887778888788999999999999888888999999999999999999998 9
Q ss_pred CCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHH
Q 004816 592 RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL 671 (729)
Q Consensus 592 ~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l 671 (729)
|++|+++|+.+|+.++..+.. .+...++.....+.+.|...+|...+.++++|+|++||++|.+||++++++++++|
T Consensus 591 p~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l 667 (706)
T 2z3z_A 591 GDVFKVGVAGGPVIDWNRYAI---MYGERYFDAPQENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDAC 667 (706)
T ss_dssp TTTEEEEEEESCCCCGGGSBH---HHHHHHHCCTTTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSCTHHHHHHHHHH
T ss_pred CCcEEEEEEcCCccchHHHHh---hhhhhhcCCcccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 999999999999988754321 12223333333356778888999999999999999999999999999999999999
Q ss_pred HhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 672 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 672 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+.++++++++++|+++|.+... ...+.++.+.+||.++|
T Consensus 668 ~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 668 VKARTYPDYYVYPSHEHNVMGP-DRVHLYETITRYFTDHL 706 (706)
T ss_dssp HHHTCCCEEEEETTCCSSCCTT-HHHHHHHHHHHHHHHHC
T ss_pred HHCCCCeEEEEeCCCCCCCCcc-cHHHHHHHHHHHHHHhC
Confidence 9999999999999999998655 67789999999999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-49 Score=458.67 Aligned_cols=567 Identities=14% Similarity=0.129 Sum_probs=404.9
Q ss_pred cCceEEcC-CCcEEEEeecCCC---CCceEEEEcCCCCCCCC---cccCCCCCcccccccccCCceEEEECCEEEEEECC
Q 004816 91 LGGTAVDG-HGRLIWLESRPTE---AGRGVLVKEPAKAGDEP---SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK 163 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~---~~~~~l~~~~~~~~g~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (729)
+..+.||| |+.++|...+... .....|+.++..+ |+. +.+. . ......|+++++.|+|..
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~-g~~~~~~~l~-~---------~~~~~~~SPDG~~la~~~-- 128 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN-GEFVRGNELP-R---------PIQYLCWSPVGSKLAYVY-- 128 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECCSSCCC-S---------SBCCEEECSSTTCEEEEE--
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC-CccccceecC-c---------ccccceECCCCCEEEEEE--
Confidence 67899999 8999888653210 0123455555552 233 2232 1 112356777788999985
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCc---------------eeeecceecCCCCEEEEEEeccCCC-------------
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPL---------------VSYADGIFDPRFNRYVTVREDRRQD------------- 215 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~---------------~~~~~~~~SPdG~~l~~~~~~~~~~------------- 215 (729)
+++||++++.+ ++.++++....... .+...+.|||||++|+|.+.+....
T Consensus 129 ~~~i~~~~~~~--g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~ 206 (719)
T 1z68_A 129 QNNIYLKQRPG--DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQY 206 (719)
T ss_dssp TTEEEEESSTT--SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSS
T ss_pred CCeEEEEeCCC--CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence 56899999998 78888875421100 0114789999999999987653210
Q ss_pred ------------CCCcceEEEEEEcCCCceE---Eeee------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEE
Q 004816 216 ------------ALNSTTEIVAIALNGQNIQ---VLVS------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV 274 (729)
Q Consensus 216 ------------~~~~~~~l~~~dl~~g~~~---~lt~------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~ 274 (729)
.......|+++|+++++.. ++.. .......++|||||+ ++|...++.. ...+|++
T Consensus 207 ~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~---~~~~l~~ 282 (719)
T 1z68_A 207 PRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQ---NVSVLSI 282 (719)
T ss_dssp CEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESST---TEEEEEE
T ss_pred ccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEecccc---CeEEEEE
Confidence 0112358999999988652 4432 334567899999975 6666434332 3467999
Q ss_pred EE----ecCCCCeeeeEEe----cCCCCCcccccc-----CceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeecc
Q 004816 275 GY----ISENGDVYKRVCV----AGFDPTIVESPT-----EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL 340 (729)
Q Consensus 275 ~d----~~~~g~~~~~~~~----~~~~~~~~~~~~-----~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~ 340 (729)
+| ++ +|+... ++ .+.+ ..+. .+.|||||+ +++......+..+|+++|+++++.+.|+..
T Consensus 283 ~d~~~~~~-~g~~~~--~~~~~~~~~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~ 355 (719)
T 1z68_A 283 CDFREDWQ-TWDCPK--TQEHIEESRT----GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSG 355 (719)
T ss_dssp EEECSSSS-SEECCG--GGEEEEECSS----SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCS
T ss_pred EcccCCCC-CCceEE--EEecccccCC----ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccC
Confidence 99 76 555422 22 2332 2333 789999999 777554437888999999999888877754
Q ss_pred CccccCCcccccCcceeeeeecCCCCEEEEEEEE----CCeEEEEEEECCCC--ceEeeccC----CcceEEe--eeeCC
Q 004816 341 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ----NGRSYLGILDDFGH--SLSLLDIP----FTDIDNI--TLGND 408 (729)
Q Consensus 341 ~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~----~g~~~ly~~d~~~g--~~~~lt~~----~~~v~~~--~~~~~ 408 (729)
..++.... +. +++.|++++.. .+..+||.++++++ +.+.|+.. ...+..+ +++++
T Consensus 356 ~~~v~~~~---------~~----d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~ 422 (719)
T 1z68_A 356 KWEAINIF---------RV----TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAK 422 (719)
T ss_dssp SSCEEEEE---------EE----CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGS
T ss_pred ceEEEEEE---------EE----eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCC
Confidence 33322222 22 56788888876 67889999999766 45777642 2233333 56677
Q ss_pred EEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCC--CccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCC
Q 004816 409 CLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD--TLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQA 486 (729)
Q Consensus 409 ~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~ 486 (729)
.+++..++++.| .++++++++++..++. ..+.. ..+....+..++.++++.. + ..++++++.|++..
T Consensus 423 ~l~~~~s~~~~p-~~~l~d~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~P~~~~--- 491 (719)
T 1z68_A 423 YYALVCYGPGIP-ISTLHDGRTDQEIKIL-----EENKELENALKNIQLPKEEIKKLEVD-E-ITLWYKMILPPQFD--- 491 (719)
T ss_dssp SEEEEECCBSSC-EEEEECSSSCCEEEEE-----ECCHHHHHHTTSBCCCEEEEEEEEET-T-EEEEEEEEECTTCC---
T ss_pred EEEEEcCCCCCC-eEEEEECCCCCEEEEe-----ecchhhhhhhccccCCceEEEEEecC-C-eEEEEEEEeCCCCC---
Confidence 777777777766 6888898887743332 22111 1244455667889999986 6 99999999998732
Q ss_pred CCCCCCCEEEEEcCCCCCCc-cccch-hhhHHH-hhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHH
Q 004816 487 SPEEKPPLLVKSHGGPTSEA-RGILN-LSIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV 563 (729)
Q Consensus 487 ~~~~~~P~vv~~hGg~~~~~-~~~~~-~~~~~l-a~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~ 563 (729)
+.++.|+||++||+++... ...|. .....+ +++||.|+++|+||+++++..+.......++...++|+.+++++|.
T Consensus 492 -~~~~~p~vl~~hG~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 570 (719)
T 1z68_A 492 -RSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFI 570 (719)
T ss_dssp -SSSCEEEEEEECCCTTBCCCCCCCCCCHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHH
T ss_pred -CCCCccEEEEECCCCCcCcccccchhhHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHH
Confidence 2567899999999976643 22332 234444 4789999999999999999998888888888788999999999999
Q ss_pred hCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhh--cCChhhhhhcCcccc
Q 004816 564 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL--VGSEKDYYEKSPINF 640 (729)
Q Consensus 564 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~~~ 640 (729)
+++.+|.+|++|+|||+||++++.++. +|++|+++|+.+|+.++..+.. .+...++... ....+.|...+|+.+
T Consensus 571 ~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~ 647 (719)
T 1z68_A 571 EMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYAS---VYTERFMGLPTKDDNLEHYKNSTVMAR 647 (719)
T ss_dssp TTSCEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSBH---HHHHHHHCCSSTTTTHHHHHHTCSGGG
T ss_pred hcCCCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhcc---ccchhhcCCcccccchhhhhhCCHhHH
Confidence 988889999999999999999999998 8999999999999988754311 1112222211 123456788889899
Q ss_pred cCCCCC-CEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 641 VDKFSC-PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 641 ~~~i~~-PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+.++++ |+|++||++|.+||++++.+++++|+.++++++++++|+++|.+ ..+...+.++.+.+||+++|+
T Consensus 648 ~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 648 AEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp GGGGTTSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHHHHHHHHHHHHHHHHHC
T ss_pred HhcCCCCcEEEEEeCCCCCcCHHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccHHHHHHHHHHHHHHhhC
Confidence 999998 89999999999999999999999999999999999999999998 556678899999999999874
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=386.87 Aligned_cols=583 Identities=12% Similarity=0.062 Sum_probs=398.4
Q ss_pred HHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcC-C----CCCCCCcccCCCC-Cccc-ccccccCCce-EEEE
Q 004816 82 DVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEP-A----KAGDEPSDITPKE-YAVR-TTAQEYGGGA-FRIF 153 (729)
Q Consensus 82 e~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~-~----~~~g~~~~l~~~~-~~~~-~~~~~~~~~~-~~~~ 153 (729)
..++....++..|..- |+++|+..... ...+ .|||.. . .+..+...|++.. ++.. ..-+...+.. ++++
T Consensus 64 ~~~~~~~~ri~~p~~~-g~~~y~f~~d~-~~~~-gl~rrt~~~~~~~~~p~wevllD~d~l~~~~g~~~~~~g~~~~~~~ 140 (711)
T 4hvt_A 64 ETIFYDQRKTPYGVIR-KGYVYNFWMDD-KNPQ-GLWRRTLVDNYSKDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQN 140 (711)
T ss_dssp HHHHTCTTSCCCCEEE-TTEEEEEECCS-SCSS-CEEEEEEHHHHTSSSCCCEEEEEHHHHHHHHTSCEEEEEEEECSSS
T ss_pred HHHhccccccCCcEEE-CCEEEEEEecC-CCCc-EEEEEccchhcccCCCCcEEEeccccccccCCCcEEEeceeecCCC
Confidence 3455554467777666 99999987654 3444 788751 1 0012344444311 1111 1112223332 5566
Q ss_pred CCEEEEEECCCC----cEEEEeCCCCCCCCeecCCCCC--CCc-----eeeecceecCCCCEEEEEEeccC--CCCCCcc
Q 004816 154 GDTVIFSNYKDQ----RLYKHSIDSKDSSPLPITPDYG--EPL-----VSYADGIFDPRFNRYVTVREDRR--QDALNST 220 (729)
Q Consensus 154 ~~~i~~~~~~~~----~l~~~d~~~~~~~~~~lt~~~~--~~~-----~~~~~~~~SPdG~~l~~~~~~~~--~~~~~~~ 220 (729)
++++++.-...| .+..+|+.+ ++ .+..+-. .+. .++..++|- |++.++|.+...+ ....+..
T Consensus 141 ~~~~~~~ls~~G~d~~~~~~~d~~t--~~--~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 141 PNRYLISMSFGGKDEMFFREWDLEK--KD--FVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp TTEEEEEEEETTCSEEEEEEEETTT--TE--ECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSB
T ss_pred CCEEEEEeCCCCCceeEEEEEECCc--CC--cCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCC
Confidence 777777655444 788999987 42 3332211 000 133445887 6666666543222 1222345
Q ss_pred eEEEEEEcCCC--ceEEeeeCC--CeeeeeeeCCCCCe---EEEEEecCCCCCCCCcEEEEEEecCC--CCeeeeEEecC
Q 004816 221 TEIVAIALNGQ--NIQVLVSGS--DFYAFPRMDPRGER---MAWIEWHHPNMPWDKAELWVGYISEN--GDVYKRVCVAG 291 (729)
Q Consensus 221 ~~l~~~dl~~g--~~~~lt~~~--~~~~~~~~SPDG~~---la~~~~~~~~~~~~~~~l~~~d~~~~--g~~~~~~~~~~ 291 (729)
..+|+..+.+. +-+.+..+. +...++..++|+++ ..+++.... +..+++|+.+++ + +++ ..+...
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~-~~~~~~--~~l~~~ 289 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKD---FYNYDNYILDTK-YKNLKL--QKINMP 289 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESS---SSCEEEEEEECS-SSSCEE--EECCSC
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecc---cCceeEEEEcCC-CCCCcc--eEeecC
Confidence 78999998774 344555432 34556777889885 234442221 245789999876 3 332 333222
Q ss_pred CCCCccccccCceeCCCCcEEEEEecC--C-----CceEEEEEEcCCC--------eEEEeeccCccccCCcccccCcce
Q 004816 292 FDPTIVESPTEPKWSSKGELFFVTDRK--N-----GFWNLHKWIESNN--------EVLAIYSLDAEFSRPLWVFGINSY 356 (729)
Q Consensus 292 ~~~~~~~~~~~~~wspDG~l~~~~~~~--~-----g~~~l~~~d~~~g--------~~~~l~~~~~~~~~~~w~~~~~~~ 356 (729)
.+ ..+.++.+|++++..... . ....|+.++++++ +.+.+.... +.....++
T Consensus 290 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~ 355 (711)
T 4hvt_A 290 SD-------ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT-------ANEVFNFI 355 (711)
T ss_dssp TT-------CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC-------TTEEEEEE
T ss_pred Cc-------ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC-------CCCeEEEE
Confidence 22 234567788766644220 1 2346888887653 344433211 11111233
Q ss_pred eeeeecCCCCEEEEEEEECCeEEEEEEECCCCc--eEe-eccCC-cceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 357 EIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS--LSL-LDIPF-TDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 357 ~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~--~~~-lt~~~-~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
.+ .++.+++...+++..+|+++++++|+ .+. +..+. ..+... ..+++.+++..++...|.++|++++.
T Consensus 356 ~~-----~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~- 429 (711)
T 4hvt_A 356 ST-----TKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT- 429 (711)
T ss_dssp EE-----CSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-
T ss_pred EE-----ECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-
Confidence 44 33468889999999999999987774 445 55442 334333 45667899999999999999999988
Q ss_pred CcceeeeeeEEecCCCCCccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc
Q 004816 431 HKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL 510 (729)
Q Consensus 431 ~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~ 510 (729)
++.+.|+ .. ...+++..+ .++++.+++. ||.+++++++.|++.. +.++.|+||++|||++......|
T Consensus 430 ~~~~~l~------~~-~~~~~~~~~-~~e~v~~~s~-DG~~i~~~l~~P~~~~----~~~~~P~vl~~HGG~~~~~~~~~ 496 (711)
T 4hvt_A 430 HELKIIR------KA-LYSFDSENY-VLEQKEATSF-DGVKIPYFLVYKKGIK----FDGKNPTLLEAYGGFQVINAPYF 496 (711)
T ss_dssp SCEEEEE------CC-SSCCCGGGE-EEEEEEEECT-TSCEEEEEEEEETTCC----CSSCCCEEEECCCCTTCCCCCCC
T ss_pred CcEEEEe------cC-CcccCcccC-eeEEEEEECC-CCeEEEEEEEecCCCC----CCCCccEEEEECCCCCCCCCCcc
Confidence 6654443 22 233454445 6889999998 9999999999998732 35678999999999988877777
Q ss_pred hhhh-HHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHH
Q 004816 511 NLSI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 589 (729)
Q Consensus 511 ~~~~-~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~ 589 (729)
.... +.|+++||+|+.+|+||++++|..|.......++...++|+.++++||++++.+|++||+|+|+|+||++++.++
T Consensus 497 ~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a 576 (711)
T 4hvt_A 497 SRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAM 576 (711)
T ss_dssp CHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHH
T ss_pred cHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHH
Confidence 7655 589999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred h-CCCcceEEEEeccccChhHHhhhcch--hhhhhhhhhcC--ChhhhhhcCcccccCCCCC--CEEEEEeCCCCCCChH
Q 004816 590 A-FRDTFKAGASLYGVADLSMLRAETHK--FESRYIDNLVG--SEKDYYEKSPINFVDKFSC--PIILFQGLEDKVVPPD 662 (729)
Q Consensus 590 ~-~~~~~~a~v~~~~~~d~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~sp~~~~~~i~~--PvL~i~G~~D~~vp~~ 662 (729)
. +|++|+++|+.+|+.|+..+...... +...|. .... ..+.+...||+.+++++++ |+|++||++|.+||+.
T Consensus 577 ~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~~~~G-~p~~~~~~~~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp~~ 655 (711)
T 4hvt_A 577 TQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYG-DPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVHPW 655 (711)
T ss_dssp HHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHC-CTTSHHHHHHHHHHCGGGSCCTTSCCCEEEEEEETTCCSSCTH
T ss_pred HhCcCceEEEEEeCCccchhhhhccccchHHHHHhC-CCcCHHHHHHHHHcCHHHHHhhcCCCCCEEEEecCCCCcCChH
Confidence 8 89999999999999998765432111 111111 0100 1245678899999999987 9999999999999999
Q ss_pred HHHHHHHHH-HhCCCCEEEEEECCCCcccCCc-ccHHHHHHHHHHHHHHHhC
Q 004816 663 QARKIYKAL-KENGLPVALVEYEGEQHGFRKA-ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 663 ~~~~~~~~l-~~~g~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~fl~~~l~ 712 (729)
++.+++++| +++|++++++++|++||++... .......+.+++||.++|+
T Consensus 656 ~s~~~~~aL~~~~g~pv~l~~~p~~gHg~~~~~~~~~~~~~~i~~FL~~~Lg 707 (711)
T 4hvt_A 656 HGRIFEYVLAQNPNTKTYFLESKDSGHGSGSDLKESANYFINLYTFFANALK 707 (711)
T ss_dssp HHHHHHHHHTTCTTCCEEEEEESSCCSSSCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCCcCcCCcchHHHHHHHHHHHHHHHhC
Confidence 999999999 9999999999999999998653 4456777889999999997
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-25 Score=221.04 Aligned_cols=213 Identities=13% Similarity=0.153 Sum_probs=148.3
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+.+++.. ||.+|++++|.|.+ .++.|+||++||+++......+...++.|+++||+|+++|+||++.++..
T Consensus 32 ~~~~~~~--dG~~i~g~l~~P~~-------~~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~ 102 (259)
T 4ao6_A 32 RGFSLEV--DGRTVPGVYWSPAE-------GSSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASV 102 (259)
T ss_dssp EEEEEEE--TTEEEEEEEEEESS-------SCCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC-------
T ss_pred EEEEEee--CCeEEEEEEEeCCC-------CCCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCCc
Confidence 3444443 89999999999976 45679999999997766666777889999999999999999998765443
Q ss_pred HHHhhccCCC---------------cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEecc
Q 004816 539 FRERLLGRWG---------------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYG 603 (729)
Q Consensus 539 ~~~~~~~~~~---------------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~ 603 (729)
.......... ...+.|..++++++... +|+++|+++|+|+||++++.++...++++++|+..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pri~Aav~~~~ 180 (259)
T 4ao6_A 103 QAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKRIKVALLGLM 180 (259)
T ss_dssp ------CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTTEEEEEEESC
T ss_pred ccccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCceEEEEEecc
Confidence 2221111110 01245777888888665 678999999999999999999984457888887665
Q ss_pred ccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE
Q 004816 604 VADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 683 (729)
Q Consensus 604 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 683 (729)
...... ..++...+.+|++|+|++||++|.+||++++.+++++|.. .+.+++++
T Consensus 181 ~~~~~~------------------------~~~~~~~a~~i~~P~Li~hG~~D~~vp~~~~~~l~~al~~--~~k~l~~~ 234 (259)
T 4ao6_A 181 GVEGVN------------------------GEDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLGT--KQKTLHVN 234 (259)
T ss_dssp CTTSTT------------------------HHHHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCC--SSEEEEEE
T ss_pred cccccc------------------------ccchhhhhccCCCCEEEEecCCCCCCCHHHHHHHHHHhCC--CCeEEEEe
Confidence 432111 1223455778999999999999999999999999999854 35689999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
|+..|.+ ...+..+.+++||+++|+
T Consensus 235 ~G~H~~~----p~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 235 PGKHSAV----PTWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp SSCTTCC----CHHHHTHHHHHHHHHHCC
T ss_pred CCCCCCc----CHHHHHHHHHHHHHHhcC
Confidence 9854433 234677889999999986
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=214.31 Aligned_cols=222 Identities=20% Similarity=0.278 Sum_probs=172.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.+++.. +|..+.++++.|.+ ..++.|+||++||..+. ...+...++.|+++||.|+++|++|.++..
T Consensus 5 ~~~~~~~~~--~~~~~~~~~~~p~~------~~~~~p~vv~~HG~~g~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~ 74 (241)
T 3f67_A 5 IAGETSIPS--QGENMPAYHARPKN------ADGPLPIVIVVQEIFGV--HEHIRDLCRRLAQEGYLAIAPELYFRQGDP 74 (241)
T ss_dssp EEEEEEEEE--TTEEEEEEEEEETT------CCSCEEEEEEECCTTCS--CHHHHHHHHHHHHTTCEEEEECTTTTTCCG
T ss_pred eeeeEEEec--CCcceEEEEecCCC------CCCCCCEEEEEcCcCcc--CHHHHHHHHHHHHCCcEEEEecccccCCCC
Confidence 346677777 79999999999976 23567999999996433 345677888999999999999999876654
Q ss_pred hhHHHh------hcc-CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh
Q 004816 537 REFRER------LLG-RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 537 ~~~~~~------~~~-~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~ 608 (729)
..+... ... .......+|+.++++++.+++ +|.++|+++|||+||.+++.++. +|+ ++++++.++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~- 151 (241)
T 3f67_A 75 NEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVG- 151 (241)
T ss_dssp GGCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSC-
T ss_pred CchhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccC-
Confidence 432211 000 111234789999999999887 78899999999999999999998 665 8888887765321
Q ss_pred HHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 609 MLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
....+...+|...+.++++|+|+++|++|..+|++++.++++.+++++.+++++++++++|
T Consensus 152 -------------------~~~~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H 212 (241)
T 3f67_A 152 -------------------EKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADH 212 (241)
T ss_dssp -------------------CCCSSSCCCHHHHGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHHHTTCSEEEEEETTCCT
T ss_pred -------------------CCccCCccCHHHhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCc
Confidence 1122334566677788899999999999999999999999999999999999999999999
Q ss_pred ccCC-------cccHHHHHHHHHHHHHHH
Q 004816 689 GFRK-------AENIKFTLEQQMVFFARV 710 (729)
Q Consensus 689 ~~~~-------~~~~~~~~~~~~~fl~~~ 710 (729)
++.. .+...+.++.+++||+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 213 AFNADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp TTTCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 9853 344567888899998753
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-24 Score=216.64 Aligned_cols=231 Identities=13% Similarity=0.107 Sum_probs=174.8
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-CccccchhhhHHHhhCCcEEEEecCCCCCCCch--
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR-- 537 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~-- 537 (729)
.++... +|..+.+++..|.... +.++.|+||++||+++. .....+...+..|+++||.|+++|+||.+....
T Consensus 17 ~~~~~~-~g~~l~~~~~~~~~~~----~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~ 91 (276)
T 3hxk_A 17 STFSLN-DTAWVDFYQLQNPRQN----ENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTNYN 91 (276)
T ss_dssp EECCCB-TTBEEEEECCCC----------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCCSC
T ss_pred ccccCC-CCeEEEEEEeCCcccc----cCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCCCC
Confidence 445565 8888988776654311 13667999999997643 334456678889999999999999998754221
Q ss_pred hHHHhhccCCCcccHHHHHHHHHHHHhCC---CCCCCcEEEEEcChHHHHHHHHHhC--CCcceEEEEeccccChhHHhh
Q 004816 538 EFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALAF--RDTFKAGASLYGVADLSMLRA 612 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~~--~~~~~a~v~~~~~~d~~~~~~ 612 (729)
.+. ...+|+.++++++.+.. .+|.++|+|+|||+||++++.++.. +++++++|+.+|+.++.....
T Consensus 92 ~~~---------~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~ 162 (276)
T 3hxk_A 92 FLS---------QNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWP 162 (276)
T ss_dssp THH---------HHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCS
T ss_pred cCc---------hHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCC
Confidence 111 23688999999998863 3688999999999999999999975 889999999999887644322
Q ss_pred hcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC
Q 004816 613 ETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692 (729)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 692 (729)
....+ ..++ ..+. ...+|...+.++++|+|++||++|.++|++++.++++.|++.+.+++++++++++|++..
T Consensus 163 ~~~~~-~~~~-----~~~~-~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 235 (276)
T 3hxk_A 163 SDLSH-FNFE-----IENI-SEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSL 235 (276)
T ss_dssp SSSSS-SCCC-----CSCC-GGGBTTTTCCTTSCCEEEEEETTCSSSCTHHHHHHHHHHHTTTCCEEEEEESCCCTTCTT
T ss_pred cchhh-hhcC-----chhh-hhCChhhccccCCCCEEEEecCCCceeChHHHHHHHHHHHHcCCCeEEEEECCCCCCccc
Confidence 11111 1111 1112 556777888889999999999999999999999999999999999999999999998754
Q ss_pred ------------cccHHHHHHHHHHHHHHHhC
Q 004816 693 ------------AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 693 ------------~~~~~~~~~~~~~fl~~~l~ 712 (729)
.+...++++.+.+||+++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~ 267 (276)
T 3hxk_A 236 ANRTTAPSDAYCLPSVHRWVSWASDWLERQIK 267 (276)
T ss_dssp CSTTSCSSSTTCCHHHHTHHHHHHHHHHHHHH
T ss_pred cCccccccccccCchHHHHHHHHHHHHHhCcc
Confidence 22457888999999999986
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=225.22 Aligned_cols=234 Identities=15% Similarity=0.092 Sum_probs=177.4
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCC
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 535 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~ 535 (729)
...+.++++. +|.+++++++.|++ .++.|+||++||+.... ..+....+.|+++||.|+++|+||.|.+
T Consensus 125 ~~~~~v~~~~--dg~~i~~~l~~p~~-------~~~~P~vl~~hG~~~~~--~~~~~~~~~l~~~G~~v~~~d~rG~G~s 193 (386)
T 2jbw_A 125 PPAERHELVV--DGIPMPVYVRIPEG-------PGPHPAVIMLGGLESTK--EESFQMENLVLDRGMATATFDGPGQGEM 193 (386)
T ss_dssp SCEEEEEEEE--TTEEEEEEEECCSS-------SCCEEEEEEECCSSCCT--TTTHHHHHHHHHTTCEEEEECCTTSGGG
T ss_pred CCeEEEEEEe--CCEEEEEEEEcCCC-------CCCCCEEEEeCCCCccH--HHHHHHHHHHHhCCCEEEEECCCCCCCC
Confidence 3568888887 79999999999976 35679999999875333 2223347889999999999999986543
Q ss_pred chhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcc
Q 004816 536 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETH 615 (729)
Q Consensus 536 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~ 615 (729)
. ..........+++.+++++|.+++.+|.++|+|+|+|+||++++.++.++++|+++|+. |+.++........
T Consensus 194 ---~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~a~v~~-~~~~~~~~~~~~~ 266 (386)
T 2jbw_A 194 ---F---EYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISW-GGFSDLDYWDLET 266 (386)
T ss_dssp ---T---TTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEE-SCCSCSTTGGGSC
T ss_pred ---C---CCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcCCcceeEEEEe-ccCChHHHHHhcc
Confidence 0 01111122245789999999998888899999999999999999999878899999999 9888754433211
Q ss_pred hhhhhhhhhhcCC------h-hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHH-HhCCCCEEEEEECCCC
Q 004816 616 KFESRYIDNLVGS------E-KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL-KENGLPVALVEYEGEQ 687 (729)
Q Consensus 616 ~~~~~~~~~~~~~------~-~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l-~~~g~~~~~~~~~~~g 687 (729)
...........+. . ..+...++...+.++++|+|+++|++|. +|++++.++++.| +. +++++++++++
T Consensus 267 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~---~~~~~~~~~~g 342 (386)
T 2jbw_A 267 PLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE---HLNLVVEKDGD 342 (386)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG---GEEEEEETTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CCHHHHHHHHHHhcCC---CcEEEEeCCCC
Confidence 1111111111221 1 3445678888889999999999999999 9999999999998 64 68999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHhCC
Q 004816 688 HGFRKAENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 688 H~~~~~~~~~~~~~~~~~fl~~~l~~ 713 (729)
|.+ .++..+..+.+.+||.++++.
T Consensus 343 H~~--~~~~~~~~~~i~~fl~~~l~~ 366 (386)
T 2jbw_A 343 HCC--HNLGIRPRLEMADWLYDVLVA 366 (386)
T ss_dssp GGG--GGGTTHHHHHHHHHHHHHHTS
T ss_pred cCC--ccchHHHHHHHHHHHHHhcCC
Confidence 976 345668899999999999973
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=233.92 Aligned_cols=259 Identities=16% Similarity=0.177 Sum_probs=186.7
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCC----cc-ccch-hhh---HHHhhCCcEEEEe
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE----AR-GILN-LSI---QYWTSRGWAFVDV 527 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~----~~-~~~~-~~~---~~la~~G~~v~~~ 527 (729)
..+.+.++.. ||.+|.++++.|.+ .++.|+||++||..... .. ..+. .+. ++|+++||+|+.+
T Consensus 24 ~~~~v~i~~~-DG~~L~~~~~~P~~-------~~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~ 95 (615)
T 1mpx_A 24 IKREVMIPMR-DGVKLHTVIVLPKG-------AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQ 95 (615)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred EEEEEEEECC-CCCEEEEEEEeCCC-------CCCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEE
Confidence 3467888887 99999999999975 35679999999853321 11 1221 122 8899999999999
Q ss_pred cCCCCCCCchhHHHhh-----ccCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEE
Q 004816 528 NYGGSTGYGREFRERL-----LGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS 600 (729)
Q Consensus 528 d~rGs~g~g~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~ 600 (729)
|+||+++++..+.... ...++..+.+|+.++++||.++ +..| .||+++|+||||++++.++. ++++|+++|+
T Consensus 96 D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~ 174 (615)
T 1mpx_A 96 DVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVP 174 (615)
T ss_dssp ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEE
T ss_pred CCCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEe
Confidence 9999988876654321 1233347899999999999998 6666 59999999999999999987 8999999999
Q ss_pred eccccCh-h-HHh-hh-c---------------------------chhhh-------------------hhhhhhc--C-
Q 004816 601 LYGVADL-S-MLR-AE-T---------------------------HKFES-------------------RYIDNLV--G- 627 (729)
Q Consensus 601 ~~~~~d~-~-~~~-~~-~---------------------------~~~~~-------------------~~~~~~~--~- 627 (729)
.+++.|+ . ... .. . ..+.. .+..... +
T Consensus 175 ~~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 254 (615)
T 1mpx_A 175 ESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAA 254 (615)
T ss_dssp ESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCS
T ss_pred cCCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCC
Confidence 9999884 3 110 00 0 00000 0000000 1
Q ss_pred ChhhhhhcCcccccCC--CCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCC---EEEEEECCCCcccCC----------
Q 004816 628 SEKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPPDQARKIYKALKENGLP---VALVEYEGEQHGFRK---------- 692 (729)
Q Consensus 628 ~~~~~~~~sp~~~~~~--i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~---~~~~~~~~~gH~~~~---------- 692 (729)
..+.|...||+.++++ |++|+|++||.+|.. ++.++.+++++|+++|++ +++++.|+ +|++..
T Consensus 255 ~d~~w~~~Sp~~~~~~~~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~~~~~~~~~~~ 332 (615)
T 1mpx_A 255 YDAFWQEQALDKVMARTPLKVPTMWLQGLWDQE-DMWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALN 332 (615)
T ss_dssp SCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSS-CSSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEE
T ss_pred cChhhhhcChhhhhhccCCCCCEEEeecccCcc-ccccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCccccccccCccc
Confidence 1244567899999999 999999999999997 889999999999998753 89999998 687511
Q ss_pred --cc-cHHHHHHHHHHHHHHHhCCCCCCCCCCceecc
Q 004816 693 --AE-NIKFTLEQQMVFFARVVGHFDVADEIIPIKID 726 (729)
Q Consensus 693 --~~-~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~ 726 (729)
.+ ......+.+++||++||++.+.....|++.+.
T Consensus 333 f~~~~~~~~~~~~~~~wfd~~Lkg~~g~~~~p~v~~~ 369 (615)
T 1mpx_A 333 FEGDTARQFRHDVLRPFFDQYLVDGAPKADTPPVFIY 369 (615)
T ss_dssp CSSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEE
T ss_pred cCcccchhhhhhHHHHHHHHHhcCCCCCCCCCCEEEE
Confidence 11 12223678899999999976333556777653
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=211.37 Aligned_cols=233 Identities=17% Similarity=0.129 Sum_probs=167.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCC-CCCCCCCCCCCEEEEEcCCCCC-CccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNP-IYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~-~~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
+.+++.. +|..+.+.+|.|... .+. ..++.|+||++|||++. .....+...+..|+++||.|+++||||.+..+
T Consensus 5 ~~~~~~~--~~~~~~~~~~~p~~~~~~~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~ 80 (277)
T 3bxp_A 5 EQRTLNT--AAHPFQITAYWLDQISDFE--TAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQ 80 (277)
T ss_dssp EEEEECS--TTCCEEEEEEEECCCCSSS--CCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTC
T ss_pred EEEEecc--CCCcceEEEEeCCcccccc--cCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCC
Confidence 4566644 688888888988631 001 24567999999997543 23345667788899999999999999855222
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCC---CCCCCcEEEEEcChHHHHHHHHHh-C--------------CCcceEE
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA-F--------------RDTFKAG 598 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~-~--------------~~~~~a~ 598 (729)
.. .....+|+.++++++.+.. .+|+++|+|+|||+||++|+.++. + +.+++++
T Consensus 81 ~~---------~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 151 (277)
T 3bxp_A 81 SV---------YPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAI 151 (277)
T ss_dssp CC---------TTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEE
T ss_pred cc---------CchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEE
Confidence 21 1134788999999988752 357789999999999999999987 3 7889999
Q ss_pred EEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCE
Q 004816 599 ASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 678 (729)
Q Consensus 599 v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~ 678 (729)
|+.+|..++........ .+....++ .+...+|...+.++.+|+|++||++|.++|++++.++++.|++.+.++
T Consensus 152 v~~~p~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~ 224 (277)
T 3bxp_A 152 ILGYPVIDLTAGFPTTS----AARNQITT---DARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQVAT 224 (277)
T ss_dssp EEESCCCBTTSSSSSSH----HHHHHHCS---CGGGSBGGGGCCTTSCCEEEEECTTCCCSCTHHHHHHHHHHHHTTCCE
T ss_pred EEeCCcccCCCCCCCcc----ccchhccc---hhhhcCHhhccccCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCeE
Confidence 99999887542211000 00001111 234466777788888999999999999999999999999999999999
Q ss_pred EEEEECCCCcccCCc--------------ccHHHHHHHHHHHHHHHh
Q 004816 679 ALVEYEGEQHGFRKA--------------ENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 679 ~~~~~~~~gH~~~~~--------------~~~~~~~~~~~~fl~~~l 711 (729)
+++++++++|.+... +...++++.+.+||+++.
T Consensus 225 ~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 225 AYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp EEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 999999999976433 225678899999998864
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-23 Score=232.85 Aligned_cols=258 Identities=17% Similarity=0.174 Sum_probs=187.4
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-----Ccc-ccch---hhh-HHHhhCCcEEEEe
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-----EAR-GILN---LSI-QYWTSRGWAFVDV 527 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~-----~~~-~~~~---~~~-~~la~~G~~v~~~ 527 (729)
.+.+.++.. ||.+|.++++.|.+ .++.|+||++||.... ... ..|. ... ++|+++||+|+.+
T Consensus 37 ~~~v~i~~~-DG~~L~~~l~~P~~-------~~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~ 108 (652)
T 2b9v_A 37 KREVMVPMR-DGVKLYTVIVIPKN-------ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQ 108 (652)
T ss_dssp EEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred EEEEEEECC-CCcEEEEEEEecCC-------CCCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEE
Confidence 467888888 99999999999976 3567999999975322 010 0111 123 8899999999999
Q ss_pred cCCCCCCCchhHHHhh--c---cCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEE
Q 004816 528 NYGGSTGYGREFRERL--L---GRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS 600 (729)
Q Consensus 528 d~rGs~g~g~~~~~~~--~---~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~ 600 (729)
|+||+++++..+.... . ..++..+.+|+.++++||.++ +..| .||+++|+||||++++.++. ++++|+++|+
T Consensus 109 D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~ 187 (652)
T 2b9v_A 109 DIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAP 187 (652)
T ss_dssp ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEE
T ss_pred ecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEe
Confidence 9999999887654331 1 222347899999999999998 7777 59999999999999999987 8899999999
Q ss_pred eccccChhH--Hh-hh-c-c----hh------------------hhhh---h--------------------hhhcC---
Q 004816 601 LYGVADLSM--LR-AE-T-H----KF------------------ESRY---I--------------------DNLVG--- 627 (729)
Q Consensus 601 ~~~~~d~~~--~~-~~-~-~----~~------------------~~~~---~--------------------~~~~~--- 627 (729)
.+++.|+.. .. .. . . .+ ...| + ...+.
T Consensus 188 ~~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 267 (652)
T 2b9v_A 188 ESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPA 267 (652)
T ss_dssp EEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCS
T ss_pred cccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCC
Confidence 999888532 00 00 0 0 00 0000 0 00000
Q ss_pred ChhhhhhcCcccccCC--CCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC--CCEEEEEECCCCcccCC-----------
Q 004816 628 SEKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPPDQARKIYKALKENG--LPVALVEYEGEQHGFRK----------- 692 (729)
Q Consensus 628 ~~~~~~~~sp~~~~~~--i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g--~~~~~~~~~~~gH~~~~----------- 692 (729)
..+.|...||+.++++ |++|+|++||.+|.+ ++.++.+++++|+.+| +++++++.|+ +|+...
T Consensus 268 ~d~yw~~~Sp~~~~~~~~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~~~~~f 345 (652)
T 2b9v_A 268 YDAFWQGQALDKILAQRKPTVPMLWEQGLWDQE-DMWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEF 345 (652)
T ss_dssp SSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSS-CSSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEEC
T ss_pred CChHHhcCChhhhhhcCCCCCCEEEEeecCCcc-ccccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccCCcccc
Confidence 1234566799999999 999999999999997 7789999999999998 8899999887 697521
Q ss_pred --cccHHHHHHHHHHHHHHHhCCCCCCCCCCceecc
Q 004816 693 --AENIKFTLEQQMVFFARVVGHFDVADEIIPIKID 726 (729)
Q Consensus 693 --~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~ 726 (729)
........+.+++||+++|++.+.....|++.+.
T Consensus 346 ~~~~~~~~~~~~~~~wfd~~Lkg~~g~~~~p~v~~~ 381 (652)
T 2b9v_A 346 EGDTAHQYRRDVFRPFFDEYLKPGSASVHLPDAIIY 381 (652)
T ss_dssp SSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEE
T ss_pred ccccchhhhhhHHHHHHHHHhCCCCCCCCCCCeEEE
Confidence 1112334678899999999976333557777664
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-23 Score=205.41 Aligned_cols=231 Identities=21% Similarity=0.258 Sum_probs=164.7
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~ 540 (729)
+++.. +|.+++++++.|.+ ..++.|+||++||.+.......|...++.|+++||.|+++|+||.|.+.....
T Consensus 4 ~~~~~--~g~~l~~~~~~p~~------~~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~ 75 (251)
T 2wtm_A 4 MYIDC--DGIKLNAYLDMPKN------NPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFE 75 (251)
T ss_dssp EEEEE--TTEEEEEEEECCTT------CCSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGG
T ss_pred eEEec--CCcEEEEEEEccCC------CCCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCCCCCCCCccc
Confidence 45554 79999999998864 12456899999998655334566778889999999999999998775443211
Q ss_pred HhhccCCC-cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcch--
Q 004816 541 ERLLGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHK-- 616 (729)
Q Consensus 541 ~~~~~~~~-~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~-- 616 (729)
.+. ....+|+.++++++.+...+ ++++++||||||.+++.++. +|++++++|+.+|.............
T Consensus 76 -----~~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 148 (251)
T 2wtm_A 76 -----DHTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLG 148 (251)
T ss_dssp -----GCCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETT
T ss_pred -----cCCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhcc
Confidence 111 12368888999999765433 48999999999999999998 99999999999987654332111000
Q ss_pred --h----hhhhhhhhcC---Ch---hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 617 --F----ESRYIDNLVG---SE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 617 --~----~~~~~~~~~~---~~---~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
+ ...+.....+ .. ......++...+.++++|+|++||++|.++|++.++++++.+. ++++++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~ 224 (251)
T 2wtm_A 149 LKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYK----NCKLVTIP 224 (251)
T ss_dssp EECBTTBCCSEEEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEET
T ss_pred ccCCchhcchHHhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcChHHHHHHHHhCC----CcEEEEEC
Confidence 0 0000000000 00 0111223344566789999999999999999999998887763 67999999
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 685 GEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 685 ~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
++||.+ .+...++.+.+.+|+.+++.
T Consensus 225 ~~gH~~--~~~~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 225 GDTHCY--DHHLELVTEAVKEFMLEQIA 250 (251)
T ss_dssp TCCTTC--TTTHHHHHHHHHHHHHHHHC
T ss_pred CCCccc--chhHHHHHHHHHHHHHHhcc
Confidence 999987 67788899999999998875
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-23 Score=215.30 Aligned_cols=239 Identities=18% Similarity=0.215 Sum_probs=173.9
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCC
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 535 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~ 535 (729)
...+.+++.+. +|.++.++++.|.+ ..++.|+||++||+++.. .+......++++||.|+++|+||.+++
T Consensus 66 ~~~~~~~~~~~-dg~~i~~~~~~P~~------~~~~~p~vv~~HG~g~~~---~~~~~~~~l~~~G~~v~~~d~rG~g~s 135 (337)
T 1vlq_A 66 VEAYDVTFSGY-RGQRIKGWLLVPKL------EEEKLPCVVQYIGYNGGR---GFPHDWLFWPSMGYICFVMDTRGQGSG 135 (337)
T ss_dssp EEEEEEEEECG-GGCEEEEEEEEECC------SCSSEEEEEECCCTTCCC---CCGGGGCHHHHTTCEEEEECCTTCCCS
T ss_pred eEEEEEEEEcC-CCCEEEEEEEecCC------CCCCccEEEEEcCCCCCC---CCchhhcchhhCCCEEEEecCCCCCCc
Confidence 35688889887 89999999999975 135679999999986543 233455678899999999999998855
Q ss_pred chhHHHhh------ccCCC---------------cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC
Q 004816 536 GREFRERL------LGRWG---------------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD 593 (729)
Q Consensus 536 g~~~~~~~------~~~~~---------------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~ 593 (729)
+....... ...++ ...++|+.++++++.++..+|.++|+++|+|+||++++.++. +|
T Consensus 136 ~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p- 214 (337)
T 1vlq_A 136 WLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK- 214 (337)
T ss_dssp SSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-
T ss_pred ccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-
Confidence 43100000 00000 034789999999999998888899999999999999999998 66
Q ss_pred cceEEEEecccc-ChhHHhhhcc--hhh--hhhhhhhcCCh----hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHH
Q 004816 594 TFKAGASLYGVA-DLSMLRAETH--KFE--SRYIDNLVGSE----KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA 664 (729)
Q Consensus 594 ~~~a~v~~~~~~-d~~~~~~~~~--~~~--~~~~~~~~~~~----~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~ 664 (729)
+++++|+.+|.. ++........ .+. ..++....... ..+...+|...+.++++|+|+++|++|.++|++++
T Consensus 215 ~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~p~~~~ 294 (337)
T 1vlq_A 215 KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTV 294 (337)
T ss_dssp SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHH
T ss_pred CccEEEECCCcccCHHHHHhcCCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHHcCCCEEEEeeCCCCCCCchhH
Confidence 699999999854 4333221110 000 11111111111 12344577788899999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 665 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 665 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.+++++++. +++++++++++|.+.. .+..+.+++||.++|+
T Consensus 295 ~~~~~~l~~---~~~~~~~~~~gH~~~~----~~~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 295 FAAYNYYAG---PKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLFE 335 (337)
T ss_dssp HHHHHHCCS---SEEEEEETTCCTTTTH----HHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCC---CcEEEEcCCCCCCCcc----hhhHHHHHHHHHHHHh
Confidence 999988864 6899999999998632 3567889999999886
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=219.03 Aligned_cols=224 Identities=15% Similarity=0.221 Sum_probs=163.2
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcc
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 550 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~ 550 (729)
.+.+.++.|++ .++.|+||++||+++. .+...++.|+++||.|+++|+||.++.... ....
T Consensus 144 ~l~~~l~~P~~-------~~~~P~Vv~~hG~~~~----~~~~~a~~La~~Gy~V~a~D~rG~g~~~~~--------~~~~ 204 (422)
T 3k2i_A 144 RVRATLFLPPG-------PGPFPGIIDIFGIGGG----LLEYRASLLAGHGFATLALAYYNFEDLPNN--------MDNI 204 (422)
T ss_dssp TEEEEEEECSS-------SCCBCEEEEECCTTCS----CCCHHHHHHHTTTCEEEEEECSSSTTSCSS--------CSCE
T ss_pred cEEEEEEcCCC-------CCCcCEEEEEcCCCcc----hhHHHHHHHHhCCCEEEEEccCCCCCCCCC--------cccC
Confidence 68889999976 3567999999998544 234468889999999999999987654332 2224
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc-----chh--hhh--
Q 004816 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-----HKF--ESR-- 620 (729)
Q Consensus 551 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~-----~~~--~~~-- 620 (729)
..+|+.+++++|.++..+|.++|+|+|||+||++++.++. +|+ ++++|+++|........... ... ...
T Consensus 205 ~~~d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (422)
T 3k2i_A 205 SLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRI 283 (422)
T ss_dssp ETHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGC
T ss_pred CHHHHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhc
Confidence 5899999999999998888899999999999999999998 776 99999998876321100000 000 000
Q ss_pred --------hhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHH-HHHHHHHHhCCCC-EEEEEECCCCccc
Q 004816 621 --------YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA-RKIYKALKENGLP-VALVEYEGEQHGF 690 (729)
Q Consensus 621 --------~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~-~~~~~~l~~~g~~-~~~~~~~~~gH~~ 690 (729)
.....+.+.......+....+.++++|+|++||++|.++|.++. +.+.+.|++.|++ +++++||++||.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~~gagH~~ 363 (422)
T 3k2i_A 284 KVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYI 363 (422)
T ss_dssp EECTTSCEECTTCBCCCTTGGGSTTBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHHTTCCCCEEEEETTCCSCC
T ss_pred ccCcchhHHHHHHHhhhhhcccccccccHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEECCCCCEE
Confidence 00000011111122233445678899999999999999999866 6899999999988 9999999999997
Q ss_pred CC---------------------------cccHHHHHHHHHHHHHHHhCCC
Q 004816 691 RK---------------------------AENIKFTLEQQMVFFARVVGHF 714 (729)
Q Consensus 691 ~~---------------------------~~~~~~~~~~~~~fl~~~l~~~ 714 (729)
.. .+...+.++.+++||+++|+..
T Consensus 364 ~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~ 414 (422)
T 3k2i_A 364 EPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGT 414 (422)
T ss_dssp CSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 32 2456789999999999999843
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=215.04 Aligned_cols=236 Identities=13% Similarity=0.099 Sum_probs=173.7
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
.+.+.+.. +|..+.++++.|. +.|+||++||+++. ...|...+..|+++||.|+++|+||.+.+..
T Consensus 6 ~~~~~~~~--~g~~l~~~~~~p~----------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~g~s~~ 71 (290)
T 3ksr_A 6 LSSIEIPV--GQDELSGTLLTPT----------GMPGVLFVHGWGGS--QHHSLVRAREAVGLGCICMTFDLRGHEGYAS 71 (290)
T ss_dssp EEEEEEEE--TTEEEEEEEEEEE----------SEEEEEEECCTTCC--TTTTHHHHHHHHTTTCEEECCCCTTSGGGGG
T ss_pred eeeEEecC--CCeEEEEEEecCC----------CCcEEEEeCCCCCC--cCcHHHHHHHHHHCCCEEEEeecCCCCCCCC
Confidence 35667766 7899999999884 35899999998543 4466778889999999999999998665433
Q ss_pred hHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcch
Q 004816 538 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHK 616 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~ 616 (729)
.... .. .....+|+.++++++.+++.+|.++|+|+|||+||++++.++. +| ++++++.+|.......+.....
T Consensus 72 ~~~~---~~-~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~~~~~~ 145 (290)
T 3ksr_A 72 MRQS---VT-RAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHWDQPKV 145 (290)
T ss_dssp GTTT---CB-HHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCTTSBHH
T ss_pred Cccc---cc-HHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhhhcccc
Confidence 2111 00 1123789999999999988788889999999999999999998 66 7888888886643221110000
Q ss_pred -hh-hhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcc
Q 004816 617 -FE-SRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694 (729)
Q Consensus 617 -~~-~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~ 694 (729)
.. .............+...++...+.++++|+|+++|++|.+++++++..+++.++..+ +++++++++++|.+...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~~ 224 (290)
T 3ksr_A 146 SLNADPDLMDYRRRALAPGDNLALAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNAR-SLTSRVIAGADHALSVKE 224 (290)
T ss_dssp HHHHSTTHHHHTTSCCCGGGCHHHHHHHHCCSEEEEEEETTCSSSCHHHHHHHHHHTTTSS-EEEEEEETTCCTTCCSHH
T ss_pred cccCChhhhhhhhhhhhhccccHHHHHHhcCCCeEEEEecCCcccChHHHHHHHHHhccCC-CceEEEcCCCCCCCCcch
Confidence 00 000111111112222333445567788999999999999999999999999998766 789999999999987766
Q ss_pred cHHHHHHHHHHHHHHHhCCC
Q 004816 695 NIKFTLEQQMVFFARVVGHF 714 (729)
Q Consensus 695 ~~~~~~~~~~~fl~~~l~~~ 714 (729)
....+.+.+.+||.+++...
T Consensus 225 ~~~~~~~~i~~fl~~~~~~~ 244 (290)
T 3ksr_A 225 HQQEYTRALIDWLTEMVVGR 244 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 77889999999999998633
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-22 Score=198.10 Aligned_cols=211 Identities=17% Similarity=0.252 Sum_probs=165.8
Q ss_pred CcE--EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC---CccccchhhhHHHhhCCcEEEEecCCC
Q 004816 457 LPE--LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS---EARGILNLSIQYWTSRGWAFVDVNYGG 531 (729)
Q Consensus 457 ~~~--~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~---~~~~~~~~~~~~la~~G~~v~~~d~rG 531 (729)
..+ .+.+.+. +| .+.++++.|.+ ++.|+||++||.++. .....+...++.|+++||.|+++|+||
T Consensus 20 ~~e~~~~~~~~~-~g-~l~~~~~~p~~--------~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g 89 (249)
T 2i3d_A 20 QGHMPEVIFNGP-AG-RLEGRYQPSKE--------KSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRS 89 (249)
T ss_dssp ----CEEEEEET-TE-EEEEEEECCSS--------TTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred cCceeEEEEECC-Cc-eEEEEEEcCCC--------CCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCC
Confidence 346 8889886 66 89999998743 456899999996422 222334667889999999999999998
Q ss_pred CCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH
Q 004816 532 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 610 (729)
Q Consensus 532 s~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~ 610 (729)
.+.....+ .......+|+.++++++.++.. +.++++++|||+||++++.++. +|+ ++++|+.+|..+...
T Consensus 90 ~G~s~~~~------~~~~~~~~d~~~~i~~l~~~~~-~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~- 160 (249)
T 2i3d_A 90 IGRSQGEF------DHGAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD- 160 (249)
T ss_dssp STTCCSCC------CSSHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC-
T ss_pred CCCCCCCC------CCccchHHHHHHHHHHHHHhCC-CCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh-
Confidence 76543221 1122346999999999988753 7779999999999999999998 887 999999999765311
Q ss_pred hhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHh-CCCCEEEEEECCCCcc
Q 004816 611 RAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE-NGLPVALVEYEGEQHG 689 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~-~g~~~~~~~~~~~gH~ 689 (729)
...+.++++|+|+++|++|.++|++++.++++.++. .+.+++++++++++|.
T Consensus 161 ---------------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~ 213 (249)
T 2i3d_A 161 ---------------------------FSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHF 213 (249)
T ss_dssp ---------------------------CTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTT
T ss_pred ---------------------------hhhhcccCCCEEEEEcCCCCCCCHHHHHHHHHHHhhccCCceeEEEECCCCcc
Confidence 123457789999999999999999999999999986 5668899999999998
Q ss_pred cCCcccHHHHHHHHHHHHHHHhCCCC
Q 004816 690 FRKAENIKFTLEQQMVFFARVVGHFD 715 (729)
Q Consensus 690 ~~~~~~~~~~~~~~~~fl~~~l~~~~ 715 (729)
+. +...+..+.+.+||.+++....
T Consensus 214 ~~--~~~~~~~~~i~~fl~~~l~~~~ 237 (249)
T 2i3d_A 214 FN--GKVDELMGECEDYLDRRLNGEL 237 (249)
T ss_dssp CT--TCHHHHHHHHHHHHHHHHTTCS
T ss_pred cc--cCHHHHHHHHHHHHHHhcCCCC
Confidence 76 4677899999999999997443
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=220.74 Aligned_cols=227 Identities=14% Similarity=0.191 Sum_probs=160.9
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcc
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 550 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~ 550 (729)
.+.++++.|.+ .++.|+||++||+.+. .+...++.|+++||.|+++||||.++.+.. ....
T Consensus 160 ~l~~~l~~P~~-------~~~~P~Vv~lhG~~~~----~~~~~a~~La~~Gy~Vla~D~rG~~~~~~~--------~~~~ 220 (446)
T 3hlk_A 160 RVRGTLFLPPE-------PGPFPGIVDMFGTGGG----LLEYRASLLAGKGFAVMALAYYNYEDLPKT--------METL 220 (446)
T ss_dssp TEEEEEEECSS-------SCCBCEEEEECCSSCS----CCCHHHHHHHTTTCEEEEECCSSSTTSCSC--------CSEE
T ss_pred eEEEEEEeCCC-------CCCCCEEEEECCCCcc----hhhHHHHHHHhCCCEEEEeccCCCCCCCcc--------hhhC
Confidence 68889999965 3567999999998543 233458899999999999999987654432 2224
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh---hc--ch--hhh-h-
Q 004816 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA---ET--HK--FES-R- 620 (729)
Q Consensus 551 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~---~~--~~--~~~-~- 620 (729)
..+|+.+++++|.++..+|.++|+|+|||+||++++.++. +|+ ++++|+.+|......... .. .. +.. .
T Consensus 221 ~~~d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (446)
T 3hlk_A 221 HLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRI 299 (446)
T ss_dssp EHHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGC
T ss_pred CHHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhcc
Confidence 5899999999999998888999999999999999999988 776 999999988653211000 00 00 000 0
Q ss_pred --------hhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHH-HHHHHHHHhCCCC-EEEEEECCCCccc
Q 004816 621 --------YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA-RKIYKALKENGLP-VALVEYEGEQHGF 690 (729)
Q Consensus 621 --------~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~-~~~~~~l~~~g~~-~~~~~~~~~gH~~ 690 (729)
.....+.+............+.++++|+|+++|++|.++|..+. ..+++.|+++|++ +++++||++||.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~pgagH~~ 379 (446)
T 3hlk_A 300 KVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYI 379 (446)
T ss_dssp EECSSSCEECTTCBCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSCHHHHHHHHHHHHHHTTCCCCEEEEETTBCSCC
T ss_pred ccccchHHHHHHHHhchhhccccccccCHHHCCCCEEEEEeCCCCCcChHHHHHHHHHHHHHcCCCCcEEEEECCCCCeE
Confidence 00000001111111122234677889999999999999999554 7999999999988 8999999999998
Q ss_pred C---------------------------CcccHHHHHHHHHHHHHHHhCCCCCC
Q 004816 691 R---------------------------KAENIKFTLEQQMVFFARVVGHFDVA 717 (729)
Q Consensus 691 ~---------------------------~~~~~~~~~~~~~~fl~~~l~~~~~~ 717 (729)
. ..+...+.++.+++||+++|+.....
T Consensus 380 ~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~~~~~ 433 (446)
T 3hlk_A 380 EPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGGHEGT 433 (446)
T ss_dssp CSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 3 22336679999999999999854333
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=211.48 Aligned_cols=245 Identities=16% Similarity=0.151 Sum_probs=168.3
Q ss_pred CCCCcEEEEeeccCCCeEEEEEEEc-CCCCCC----------------CCCCCCCCCEEEEEcCCCCCCccc---cchhh
Q 004816 454 YFSLPELIEFPTEVPGQKAYAYYYP-PSNPIY----------------QASPEEKPPLLVKSHGGPTSEARG---ILNLS 513 (729)
Q Consensus 454 ~~~~~~~~~~~~~~dG~~l~~~l~~-P~~~~~----------------~~~~~~~~P~vv~~hGg~~~~~~~---~~~~~ 513 (729)
.....+.+.+... +| +.+.+|. |..... ..+..++.|+||++|||++..... .|...
T Consensus 60 ~~v~~~dv~~~~~-~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~ 136 (365)
T 3ebl_A 60 EGVSSFDHIIDQS-VG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSL 136 (365)
T ss_dssp TTEEEEEEEEETT-TT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHH
T ss_pred CCCceeeEEecCC-CC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHH
Confidence 3445677888876 77 6666676 764200 001245789999999987543322 25667
Q ss_pred hHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC----CCCCC-cEEEEEcChHHHHHHH
Q 004816 514 IQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG----KADEK-RLCITGGSAGGYTTLA 587 (729)
Q Consensus 514 ~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-ri~i~G~S~GG~~a~~ 587 (729)
++.|+++ ||.|+.+|||+++++.. ...++|+.++++|+.++. .+|++ ||+|+|+|+||++|+.
T Consensus 137 ~~~la~~~g~~Vv~~dyR~~p~~~~-----------~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~ 205 (365)
T 3ebl_A 137 CRRFVKLSKGVVVSVNYRRAPEHRY-----------PCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHH 205 (365)
T ss_dssp HHHHHHHHTSEEEEECCCCTTTSCT-----------THHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHH
T ss_pred HHHHHHHCCCEEEEeeCCCCCCCCC-----------cHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHH
Confidence 7888886 99999999998765331 134799999999999764 58898 9999999999999998
Q ss_pred HHh-CCC---cceEEEEeccccChhHHhhhcchh----------hhhhhhhhcC--ChhhhhhcCccc-ccCCCC----C
Q 004816 588 ALA-FRD---TFKAGASLYGVADLSMLRAETHKF----------ESRYIDNLVG--SEKDYYEKSPIN-FVDKFS----C 646 (729)
Q Consensus 588 ~~~-~~~---~~~a~v~~~~~~d~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~sp~~-~~~~i~----~ 646 (729)
++. .++ +++++|+.+|+.+........... ...+...... ........+|+. ....++ +
T Consensus 206 ~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~p 285 (365)
T 3ebl_A 206 VAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFA 285 (365)
T ss_dssp HHHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTCCCCTTSCCC
T ss_pred HHHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhccCCCC
Confidence 886 443 799999999998754221110000 0001111111 111112223432 233444 5
Q ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC---CcccHHHHHHHHHHHHHHHhCCC
Q 004816 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR---KAENIKFTLEQQMVFFARVVGHF 714 (729)
Q Consensus 647 PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~~fl~~~l~~~ 714 (729)
|+|++||++|.++ .++.+++++|+++|+++++++++|++|+|. ..+...++++.+.+||+++++..
T Consensus 286 P~Li~~G~~D~l~--~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~~~ 354 (365)
T 3ebl_A 286 KSLIIVSGLDLTC--DRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLYYG 354 (365)
T ss_dssp CEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC--
T ss_pred CEEEEEcCcccch--hHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhhcc
Confidence 8999999999654 567899999999999999999999999975 34667789999999999999743
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-23 Score=211.35 Aligned_cols=234 Identities=15% Similarity=0.127 Sum_probs=170.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCC-CCCCCCCCCCEEEEEcCCCCC-CccccchhhhHHHhhCCcEEEEecCCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPI-YQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTG 534 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~-~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~la~~G~~v~~~d~rGs~g 534 (729)
+.+.+.+... +|..+.+.+| |++.. +. ..++.|+||++||+++. .....+...+..|+++||.|+++|+||.+.
T Consensus 18 ~~~~v~~~~~-~g~~~~~~~y-p~~~~~~~--~~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~~ 93 (283)
T 3bjr_A 18 QGMQVIKQKL-TATCAQLTGY-LHQPDTNA--HQTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLTD 93 (283)
T ss_dssp CSSEEEEEEC-TTSSCEEEEE-EC----------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTTT
T ss_pred CCcceEEeec-CCCceeEEEe-cCCccccc--cCCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCCc
Confidence 4567778776 7877777888 65410 00 13567999999997643 223446678889999999999999998765
Q ss_pred CchhHHHhhccCCCcccHHHHHHHHHHHHhCC---CCCCCcEEEEEcChHHHHHHHHHh-CCCc-------------ceE
Q 004816 535 YGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA-FRDT-------------FKA 597 (729)
Q Consensus 535 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~-~~~~-------------~~a 597 (729)
.+.. ......|+.++++++.+.. .+|.++++|+|||+||++++.++. +|++ +++
T Consensus 94 ~~~~---------~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (283)
T 3bjr_A 94 QQPL---------GLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNN 164 (283)
T ss_dssp CSSC---------BTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSS
T ss_pred cccC---------chhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccE
Confidence 4201 1123678999999998863 467789999999999999999988 8876 899
Q ss_pred EEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCC
Q 004816 598 GASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 677 (729)
Q Consensus 598 ~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~ 677 (729)
+++.+|..++........ ......+ ..+...++...+.++++|+|+++|++|.++|++++.++++.++..|.+
T Consensus 165 ~v~~~p~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~~~~~l~~~g~~ 237 (283)
T 3bjr_A 165 VVLGYPVISPLLGFPKDD----ATLATWT---PTPNELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALATAKIP 237 (283)
T ss_dssp EEEESCCCCTTSBC------------CCC---CCGGGGCGGGSCCTTCCCEEEEEESCCTTSCTHHHHHHHHHHHHTTCC
T ss_pred EEEcCCcccccccccccc----chHHHHH---HHhHhcCHHHhccCCCCCEEEEEcCCCCCCChHHHHHHHHHHHHCCCC
Confidence 999999887432111000 0011111 123455677778888999999999999999999999999999999999
Q ss_pred EEEEEECCCCcccCCcc------------cHHHHHHHHHHHHHHH
Q 004816 678 VALVEYEGEQHGFRKAE------------NIKFTLEQQMVFFARV 710 (729)
Q Consensus 678 ~~~~~~~~~gH~~~~~~------------~~~~~~~~~~~fl~~~ 710 (729)
++++++++++|.+.... ...++.+.+.+||+++
T Consensus 238 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 238 YELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp EEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred eEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 99999999999864322 1247788888998764
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-22 Score=206.89 Aligned_cols=230 Identities=18% Similarity=0.248 Sum_probs=167.9
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCC-ccccchhhhHHHhh-CCcEEEEecCCCCCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWTS-RGWAFVDVNYGGSTGY 535 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~ 535 (729)
.+.+++++. +| .+.+++|.|.+ ...|+||++|||++.. ....+...+..|++ .||.|+.+|||+++++
T Consensus 63 ~~~~~~~~~-~g-~i~~~~~~p~~--------~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~ 132 (326)
T 3ga7_A 63 TRTCAVPTP-YG-DVTTRLYSPQP--------TSQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQA 132 (326)
T ss_dssp EEEEEECCT-TS-CEEEEEEESSS--------SCSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTS
T ss_pred eEEEEeecC-CC-CeEEEEEeCCC--------CCCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCC
Confidence 378888887 77 89999999965 1239999999986432 23445667788888 7999999999987654
Q ss_pred chhHHHhhccCCCcccHHHHHHHHHHHHhCC---CCCCCcEEEEEcChHHHHHHHHHh-CCC------cceEEEEecccc
Q 004816 536 GREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA-FRD------TFKAGASLYGVA 605 (729)
Q Consensus 536 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~-~~~------~~~a~v~~~~~~ 605 (729)
... ..++|+.++++|+.+.. .+|++||+|+|+|+||++|+.++. +++ .++++++.+|+.
T Consensus 133 ~~~-----------~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~ 201 (326)
T 3ga7_A 133 RYP-----------QAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLY 201 (326)
T ss_dssp CTT-----------HHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCC
T ss_pred CCC-----------cHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEecccc
Confidence 311 23689999999998863 578999999999999999999886 554 389999999987
Q ss_pred ChhHHhhh---c---chh----hhhhhhhhcCChhhhhhcCcc-----cccCCCCCCEEEEEeCCCCCCChHHHHHHHHH
Q 004816 606 DLSMLRAE---T---HKF----ESRYIDNLVGSEKDYYEKSPI-----NFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 670 (729)
Q Consensus 606 d~~~~~~~---~---~~~----~~~~~~~~~~~~~~~~~~sp~-----~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~ 670 (729)
+....... . ... ...+......... ...+|. ..+.+..+|+|++||+.|.++ .++.+++++
T Consensus 202 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~--~~~~~~~~~ 277 (326)
T 3ga7_A 202 GLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDE--DRESPWYCLFNNDLTRDVPPCFIASAEFDPLI--DDSRLLHQT 277 (326)
T ss_dssp SCSCCHHHHHCCCTTTTCCHHHHHHHHHHHCSSGG--GGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH--HHHHHHHHH
T ss_pred ccCCChhHhhhcCCCCCCCHHHHHHHHHHhCCCCC--ccCCcccCCCcchhhcCCCCEEEEecCcCcCH--HHHHHHHHH
Confidence 65321100 0 000 0111111111111 111222 123345679999999999987 589999999
Q ss_pred HHhCCCCEEEEEECCCCcccCCc----ccHHHHHHHHHHHHHHHhC
Q 004816 671 LKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 671 l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 712 (729)
|+++|+++++++|++++|+|... +...+.++.+.+||+++++
T Consensus 278 l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~ 323 (326)
T 3ga7_A 278 LQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMK 323 (326)
T ss_dssp HHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998532 3457899999999999986
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-23 Score=202.61 Aligned_cols=211 Identities=16% Similarity=0.204 Sum_probs=162.0
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhH
Q 004816 460 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 539 (729)
Q Consensus 460 ~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~ 539 (729)
.+++.+. +|..+.++++.|.+ ++.|+||++||..+. ...+...++.|+++||.|+++|+||.+..+...
T Consensus 5 ~~~~~~~-~g~~l~~~~~~p~~--------~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~ 73 (236)
T 1zi8_A 5 GISIQSY-DGHTFGALVGSPAK--------APAPVIVIAQDIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTAL 73 (236)
T ss_dssp TCCEECT-TSCEECEEEECCSS--------CSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBC
T ss_pred eEEEecC-CCCeEEEEEECCCC--------CCCCEEEEEcCCCCC--CHHHHHHHHHHHhCCcEEEeccccccCCCcccc
Confidence 3456666 89999999998853 456899999997443 335667888999999999999999876544211
Q ss_pred HH-------h----hccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh
Q 004816 540 RE-------R----LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL 607 (729)
Q Consensus 540 ~~-------~----~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~ 607 (729)
.. . ..........+|+.++++++.++..++ ++++++|||+||.+++.++. +| ++++++.+|....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~ 150 (236)
T 1zi8_A 74 DPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE 150 (236)
T ss_dssp CTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG
T ss_pred cccchhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc
Confidence 00 0 000011123789999999998876545 69999999999999999998 66 8999988875321
Q ss_pred hHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCC
Q 004816 608 SMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~g 687 (729)
++...+.++++|+|+++|++|..+|++++.++++.++.++ +++++++++++
T Consensus 151 ----------------------------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 201 (236)
T 1zi8_A 151 ----------------------------KQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVHWYEEAG 201 (236)
T ss_dssp ----------------------------GCGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCT-TEEEEEETTCC
T ss_pred ----------------------------cchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHHHhCC-CceEEEECCCC
Confidence 1223456778999999999999999999999999998766 89999999999
Q ss_pred cccCCc-------ccHHHHHHHHHHHHHHHhCC
Q 004816 688 HGFRKA-------ENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 688 H~~~~~-------~~~~~~~~~~~~fl~~~l~~ 713 (729)
|.+... +...+.++.+.+||+++++.
T Consensus 202 H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 202 HSFARTGSSGYVASAAALANERTLDFLVPLQSR 234 (236)
T ss_dssp TTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC-
T ss_pred cccccCCCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 987643 23467889999999999874
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=196.40 Aligned_cols=209 Identities=17% Similarity=0.123 Sum_probs=162.5
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.+.+.. +|.++.++++.|.+ +.|+||++||.+.....+.+...++.|+++||.|+.+|+||.+
T Consensus 11 ~~~~~~~~~--~g~~l~~~~~~p~~---------~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g--- 76 (223)
T 2o2g_A 11 QEYAVSVSV--GEVKLKGNLVIPNG---------ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLTQE--- 76 (223)
T ss_dssp CEEEEEEEE--TTEEEEEEEECCTT---------CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSCHH---
T ss_pred eeeEEEEec--CCeEEEEEEecCCC---------CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCCcC---
Confidence 356777776 79999999998854 4689999999865554445566788899999999999999643
Q ss_pred hhHHHhhcc--CCC-cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh
Q 004816 537 REFRERLLG--RWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA 612 (729)
Q Consensus 537 ~~~~~~~~~--~~~-~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~ 612 (729)
.+....... ... ....+|+.++++++..+..+|.++++++|||+||.+++.++. +|++++++|+.+|..++..
T Consensus 77 ~s~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~--- 153 (223)
T 2o2g_A 77 EEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLAP--- 153 (223)
T ss_dssp HHHHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGCT---
T ss_pred CCCccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcCH---
Confidence 332221110 011 122688999999999988889999999999999999999988 8999999999998654310
Q ss_pred hcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC
Q 004816 613 ETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692 (729)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 692 (729)
..+.++++|+|+++|++|..+|.. ..+.+++.+.+++++++++++|.+..
T Consensus 154 --------------------------~~~~~~~~P~l~i~g~~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~H~~~~ 203 (223)
T 2o2g_A 154 --------------------------SALPHVKAPTLLIVGGYDLPVIAM----NEDALEQLQTSKRLVIIPRASHLFEE 203 (223)
T ss_dssp --------------------------TTGGGCCSCEEEEEETTCHHHHHH----HHHHHHHCCSSEEEEEETTCCTTCCS
T ss_pred --------------------------HHHhcCCCCEEEEEccccCCCCHH----HHHHHHhhCCCeEEEEeCCCCcccCC
Confidence 234567899999999999988643 34455566678999999999999877
Q ss_pred cccHHHHHHHHHHHHHHHhC
Q 004816 693 AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 693 ~~~~~~~~~~~~~fl~~~l~ 712 (729)
++...+..+.+.+||+++|+
T Consensus 204 ~~~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 204 PGALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp TTHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 67778899999999999874
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-23 Score=210.38 Aligned_cols=242 Identities=16% Similarity=0.177 Sum_probs=165.1
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc-chhhhHHHhhCCcEEEEecC--CCCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNY--GGSTG 534 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~-~~~~~~~la~~G~~v~~~d~--rGs~g 534 (729)
.+.+++.+...|..+.+.++.|++.. .++.|+||++||+++...... +....+.++++||.|+++|+ ||.++
T Consensus 16 ~~~~~~~s~~~~~~~~~~v~~P~~~~-----~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~ 90 (282)
T 3fcx_A 16 QKVFEHDSVELNCKMKFAVYLPPKAE-----TGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNI 90 (282)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG-----TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC
T ss_pred EEEEEEEchhcCCeeEEEEEcCCCCC-----CCCCCEEEEEcCCCCCccchhhcchHHHHhhcCCeEEEEeccccCcccc
Confidence 34556655547899999999997622 357899999999865543221 11235778899999999999 88776
Q ss_pred CchhH-----------HHhhccCCCc--ccHHHH-HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEE
Q 004816 535 YGREF-----------RERLLGRWGI--VDVNDC-CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGA 599 (729)
Q Consensus 535 ~g~~~-----------~~~~~~~~~~--~~~~D~-~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v 599 (729)
.|... .......+.. ....++ ..+++++.++..+|++||+|+|+|+||++|+.++. +|++|++++
T Consensus 91 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 170 (282)
T 3fcx_A 91 KGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVS 170 (282)
T ss_dssp --------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEE
T ss_pred ccccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEE
Confidence 54331 1100000000 112223 34555665555578899999999999999999998 899999999
Q ss_pred EeccccChhHHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCCC---CCCEEEEEeCCCCCCChHH--HHHHHHHHHh
Q 004816 600 SLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKF---SCPIILFQGLEDKVVPPDQ--ARKIYKALKE 673 (729)
Q Consensus 600 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i---~~PvL~i~G~~D~~vp~~~--~~~~~~~l~~ 673 (729)
+.+|+.+....... .......++ ....+...+|...+.++ ++|+|++||++|.++|..+ +++++++|++
T Consensus 171 ~~s~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~~l~~ 245 (282)
T 3fcx_A 171 AFAPICNPVLCPWG-----KKAFSGYLGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFIAACTE 245 (282)
T ss_dssp EESCCCCGGGSHHH-----HHHHHHHHC---CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHHTTSSCHHHHHHHHHH
T ss_pred EeCCccCcccCchh-----HHHHHHhcCCchhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccccchhhHHHHHHHHHH
Confidence 99998876432111 111111222 23345555665554444 7899999999999986654 6699999999
Q ss_pred CCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 674 NGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 674 ~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+|.+++++++|+++|.|. .+...+...++|+.++|+
T Consensus 246 ~g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 246 KKIPVVFRLQEDYDHSYY---FIATFITDHIRHHAKYLN 281 (282)
T ss_dssp TTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred cCCceEEEECCCCCcCHH---HHHhhhHHHHHHHHHhhc
Confidence 999999999999999873 455778888999999875
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=209.16 Aligned_cols=221 Identities=16% Similarity=0.123 Sum_probs=159.5
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc-ccchhhhHHHhh-CCcEEEEecCCCCCCCchhHHHhhccCCC
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWG 548 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~~~~~~~~~~~~ 548 (729)
.+.++++.|.+ .++.|+||++|||++.... ..+......++. .||.|+.+|||+++++..
T Consensus 66 ~i~~~~~~p~~-------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~~----------- 127 (322)
T 3fak_A 66 GCAAEWVRAPG-------CQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHPF----------- 127 (322)
T ss_dssp TEEEEEEECTT-------CCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSCT-----------
T ss_pred CeEEEEEeCCC-------CCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCC-----------
Confidence 37888898865 3567999999998653322 234455666666 599999999998765431
Q ss_pred cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC----cceEEEEeccccChhHHhhhcch-------
Q 004816 549 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD----TFKAGASLYGVADLSMLRAETHK------- 616 (729)
Q Consensus 549 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~----~~~a~v~~~~~~d~~~~~~~~~~------- 616 (729)
...++|+.++++|+.++ .+|++||+|+|+|+||++|+.++. .++ .++++|+++|+.++.........
T Consensus 128 ~~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~~ 206 (322)
T 3fak_A 128 PAAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADPM 206 (322)
T ss_dssp THHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHHTTTTCCS
T ss_pred CcHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHHhCccCcc
Confidence 13479999999999998 678999999999999999998886 443 49999999999886432111000
Q ss_pred ----hhhhhhhhhcC-ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC
Q 004816 617 ----FESRYIDNLVG-SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691 (729)
Q Consensus 617 ----~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 691 (729)
....+.....+ ........+|+.......+|+||+||+.|.+ ..++.+++++|+.+|+++++++||+++|+|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~--~~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~ 284 (322)
T 3fak_A 207 VAPGGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVL--LDDSIKLDAKAKADGVKSTLEIWDDMIHVWH 284 (322)
T ss_dssp CCSSHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTT--HHHHHHHHHHHHHTTCCEEEEEETTCCTTGG
T ss_pred cCHHHHHHHHHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCcc--HHHHHHHHHHHHHcCCCEEEEEeCCceeehh
Confidence 00011111111 1111223455533333336999999999977 5789999999999999999999999999875
Q ss_pred C----cccHHHHHHHHHHHHHHHhC
Q 004816 692 K----AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 692 ~----~~~~~~~~~~~~~fl~~~l~ 712 (729)
. .+...+.++.+.+||+++|+
T Consensus 285 ~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (322)
T 3fak_A 285 AFHPMLPEGKQAIVRVGEFMREQWA 309 (322)
T ss_dssp GGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHh
Confidence 3 34467889999999999997
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-22 Score=212.45 Aligned_cols=218 Identities=25% Similarity=0.323 Sum_probs=169.1
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch--------h--hhHHHhhCCcEEEEe
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--------L--SIQYWTSRGWAFVDV 527 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~--------~--~~~~la~~G~~v~~~ 527 (729)
.+.+.+....+|..+.++++.|.+.. +.+++|+||++||+++........ . ...+....|+.|+.+
T Consensus 144 ~~~~~~~~~~dg~~l~~~v~~P~~~~----~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~p 219 (380)
T 3doh_A 144 FLAFTFKDPETGVEIPYRLFVPKDVN----PDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAP 219 (380)
T ss_dssp EEEEEEECTTTCCEEEEEEECCSSCC----TTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEE
T ss_pred ccceeeccCCCCcEEEEEEEcCCCCC----CCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEe
Confidence 45666766337889999999998732 356789999999986543222111 1 122345678999999
Q ss_pred cCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC
Q 004816 528 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD 606 (729)
Q Consensus 528 d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d 606 (729)
|++|.++++..|........+..+.+|+.++++++.++..+|++||+|+|||+||++++.++. +|++|+++++.+|..+
T Consensus 220 d~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~ 299 (380)
T 3doh_A 220 QCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGD 299 (380)
T ss_dssp CCCTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCC
T ss_pred cCCCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCC
Confidence 999998888877654444444567899999999999988889999999999999999998887 9999999999999863
Q ss_pred hhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 607 LSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
.. .+.+++ +|+|++||++|..+|++++.+++++|+++|.++++++||+
T Consensus 300 ~~-------------------------------~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 348 (380)
T 3doh_A 300 VS-------------------------------KVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEK 348 (380)
T ss_dssp GG-------------------------------GGGGGTTSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred hh-------------------------------hhhhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCceEEEEecC
Confidence 21 122233 8999999999999999999999999999999999999999
Q ss_pred C---CcccCCcccHHHHHH--HHHHHHHHH
Q 004816 686 E---QHGFRKAENIKFTLE--QQMVFFARV 710 (729)
Q Consensus 686 ~---gH~~~~~~~~~~~~~--~~~~fl~~~ 710 (729)
+ +|+|.....+...+. .+++||.++
T Consensus 349 ~~h~~h~~~~H~~~~~~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 349 GFMEKHGWDPHGSWIPTYENQEAIEWLFEQ 378 (380)
T ss_dssp THHHHTTCCTTCTHHHHHTCHHHHHHHHTC
T ss_pred CcccCCCCCCchhHHHhcCCHHHHHHHHhh
Confidence 9 454443345556666 889999875
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=190.52 Aligned_cols=200 Identities=17% Similarity=0.177 Sum_probs=155.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCC---CCCccccchhhhHHHhhCCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP---TSEARGILNLSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~---~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~ 533 (729)
..+.+.+.+. +| ++.++++.|.+ .++.|+||++||++ +......+..+++.|+++||.|+.+|+||.+
T Consensus 5 ~~~~~~~~~~-~g-~l~~~~~~p~~-------~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g 75 (208)
T 3trd_A 5 TNEDFLIQGP-VG-QLEVMITRPKG-------IEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVG 75 (208)
T ss_dssp SSSCEEEECS-SS-EEEEEEECCSS-------CCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTST
T ss_pred ccceEEEECC-Cc-eEEEEEEcCCC-------CCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCC
Confidence 4677888887 88 99999998865 34679999999953 2333344567888999999999999999876
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhh
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAE 613 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~ 613 (729)
.....+ .......+|+.++++++.++ .+.++++++|||+||.+++.++.+| +++++|+.+|..+...
T Consensus 76 ~s~~~~------~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~-~v~~~v~~~~~~~~~~---- 142 (208)
T 3trd_A 76 KSQGRY------DNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVAYDQ-KVAQLISVAPPVFYEG---- 142 (208)
T ss_dssp TCCSCC------CTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHS-CCSEEEEESCCTTSGG----
T ss_pred CCCCCc------cchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHhccC-CccEEEEeccccccCC----
Confidence 544321 12234589999999999887 4458999999999999999999766 8999999998762110
Q ss_pred cchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc
Q 004816 614 THKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA 693 (729)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~ 693 (729)
...+..+++|+|+++|++|.++|++++.++++.+.. +++++++++++|.+...
T Consensus 143 ------------------------~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~H~~~~~ 195 (208)
T 3trd_A 143 ------------------------FASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISS---PVEFVVMSGASHFFHGR 195 (208)
T ss_dssp ------------------------GTTCCSCCSCEEEEEETTCSSSCHHHHHHHHHHSSS---CCEEEEETTCCSSCTTC
T ss_pred ------------------------chhhhhcCCCEEEEECCCCCCCCHHHHHHHHHHccC---ceEEEEeCCCCCccccc
Confidence 122445589999999999999999999988887764 37999999999987643
Q ss_pred ccHHHHHHHHHHHH
Q 004816 694 ENIKFTLEQQMVFF 707 (729)
Q Consensus 694 ~~~~~~~~~~~~fl 707 (729)
..+..+.+.+||
T Consensus 196 --~~~~~~~i~~fl 207 (208)
T 3trd_A 196 --LIELRELLVRNL 207 (208)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHh
Confidence 356666666665
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-22 Score=199.94 Aligned_cols=232 Identities=16% Similarity=0.195 Sum_probs=166.9
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.+.+.. +|.++.++++.|.+ ++.|+||++||.++......+..++..|+++||.|+++|+||.|...
T Consensus 21 ~~~~~~~~~--~g~~l~~~~~~p~~--------~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 90 (270)
T 3pfb_A 21 GMATITLER--DGLQLVGTREEPFG--------EIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSD 90 (270)
T ss_dssp EEEEEEEEE--TTEEEEEEEEECSS--------SSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTSS
T ss_pred cceEEEecc--CCEEEEEEEEcCCC--------CCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccccCCC
Confidence 345555654 89999999998854 34689999999866544455777888999999999999999876654
Q ss_pred hhHHHhhccCCC-cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc
Q 004816 537 REFRERLLGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 614 (729)
Q Consensus 537 ~~~~~~~~~~~~-~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~ 614 (729)
..... +. ....+|+.++++++.++.. .++++|+|||+||++++.++. +|++++++|+.+|..+........
T Consensus 91 ~~~~~-----~~~~~~~~d~~~~i~~l~~~~~--~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~ 163 (270)
T 3pfb_A 91 GKFEN-----MTVLNEIEDANAILNYVKTDPH--VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEG 163 (270)
T ss_dssp SCGGG-----CCHHHHHHHHHHHHHHHHTCTT--EEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHT
T ss_pred CCCCc-----cCHHHHHHhHHHHHHHHHhCcC--CCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhh
Confidence 32111 11 1237889999999988643 359999999999999999988 999999999999987654322111
Q ss_pred chhhhhhhhhhcC-------------ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEE
Q 004816 615 HKFESRYIDNLVG-------------SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 681 (729)
Q Consensus 615 ~~~~~~~~~~~~~-------------~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 681 (729)
......+...... ....+...++...+.++++|+|+++|++|.++|++.+.++.+.+. +++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~ 239 (270)
T 3pfb_A 164 NTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQ----NSTLH 239 (270)
T ss_dssp EETTEECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSCTHHHHHHHHHCS----SEEEE
T ss_pred hhhccccCcccccccccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCCHHHHHHHHHhCC----CCeEE
Confidence 0000000000000 012233345556678899999999999999999999988887754 57999
Q ss_pred EECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 682 EYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 682 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+++++||.+. .+...++.+.+.+||.++
T Consensus 240 ~~~~~gH~~~-~~~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 240 LIEGADHCFS-DSYQKNAVNLTTDFLQNN 267 (270)
T ss_dssp EETTCCTTCC-THHHHHHHHHHHHHHC--
T ss_pred EcCCCCcccC-ccchHHHHHHHHHHHhhc
Confidence 9999999875 456677888888888764
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=205.03 Aligned_cols=207 Identities=18% Similarity=0.232 Sum_probs=144.0
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.+.||++||.+++ ...|..+++.|+++||.|+++|+||.|.+...... ..+ ....+|+.+++++|.+. .+
T Consensus 51 ~~~VlllHG~~~s--~~~~~~la~~La~~Gy~Via~Dl~GhG~S~~~~~~---~~~-~~~~~d~~~~~~~l~~~----~~ 120 (281)
T 4fbl_A 51 RIGVLVSHGFTGS--PQSMRFLAEGFARAGYTVATPRLTGHGTTPAEMAA---STA-SDWTADIVAAMRWLEER----CD 120 (281)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTTSSSCHHHHHT---CCH-HHHHHHHHHHHHHHHHH----CS
T ss_pred CceEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccC---CCH-HHHHHHHHHHHHHHHhC----CC
Confidence 4568999997443 34577889999999999999999976654322211 111 11267889999998765 36
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhh---hhcC---C---hhhhhhcC-----
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYID---NLVG---S---EKDYYEKS----- 636 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~---~~~~---~---~~~~~~~s----- 636 (729)
+++|+||||||.+++.++. +|++++++|+.++...+.........+...... .... . .+......
T Consensus 121 ~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (281)
T 4fbl_A 121 VLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPAI 200 (281)
T ss_dssp EEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEEGGGH
T ss_pred eEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCchHHH
Confidence 8999999999999999998 999999999999876543211100000000000 0000 0 00000000
Q ss_pred ---------cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 637 ---------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 637 ---------p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
....+.+|++|+|+++|++|.++|+++++.+++.+.. .+++++++|++||.+......+++.+.+.+||
T Consensus 201 ~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~l~~--~~~~l~~~~~~gH~~~~e~~~e~v~~~i~~FL 278 (281)
T 4fbl_A 201 KHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIGS--TEKELLWLENSYHVATLDNDKELILERSLAFI 278 (281)
T ss_dssp HHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSCTHHHHHHHHHCCC--SSEEEEEESSCCSCGGGSTTHHHHHHHHHHHH
T ss_pred HHHHHhhhhccccccccCCCEEEEEeCCCCCcCHHHHHHHHHhCCC--CCcEEEEECCCCCcCccccCHHHHHHHHHHHH
Confidence 1123678999999999999999999999999988753 46799999999998765555778889999999
Q ss_pred HHH
Q 004816 708 ARV 710 (729)
Q Consensus 708 ~~~ 710 (729)
++|
T Consensus 279 ~~H 281 (281)
T 4fbl_A 279 RKH 281 (281)
T ss_dssp HTC
T ss_pred HhC
Confidence 976
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=204.12 Aligned_cols=237 Identities=21% Similarity=0.248 Sum_probs=168.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.+++.+. +|..+.++++.|.+ .++.|+||++||+++.. ...+.. ...++++||.|+++|+||.+++.
T Consensus 55 ~~~~~~~~~~-~g~~i~~~~~~P~~-------~~~~p~vv~~HG~~~~~-~~~~~~-~~~l~~~g~~v~~~d~rg~g~s~ 124 (318)
T 1l7a_A 55 KVYRLTYKSF-GNARITGWYAVPDK-------EGPHPAIVKYHGYNASY-DGEIHE-MVNWALHGYATFGMLVRGQQRSE 124 (318)
T ss_dssp EEEEEEEEEG-GGEEEEEEEEEESS-------CSCEEEEEEECCTTCCS-GGGHHH-HHHHHHTTCEEEEECCTTTSSSC
T ss_pred EEEEEEEEcc-CCCEEEEEEEeeCC-------CCCccEEEEEcCCCCCC-CCCccc-ccchhhCCcEEEEecCCCCCCCC
Confidence 4577888887 89999999999965 35679999999986540 222333 34778899999999999988765
Q ss_pred hhHHHhhc-----cCCC---------cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEe
Q 004816 537 REFRERLL-----GRWG---------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASL 601 (729)
Q Consensus 537 ~~~~~~~~-----~~~~---------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~ 601 (729)
..+..... ...+ ...++|+.++++++.++..+|.++|+++|||+||.+++.++. +|+ ++++|+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~ 203 (318)
T 1l7a_A 125 DTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVAD 203 (318)
T ss_dssp CCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEE
T ss_pred CcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEec
Confidence 44211000 0001 123789999999999988788899999999999999999988 664 7888888
Q ss_pred cccc-ChhHHhhhcc--hhh--hhhhhhhc---CC---hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHH
Q 004816 602 YGVA-DLSMLRAETH--KFE--SRYIDNLV---GS---EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 670 (729)
Q Consensus 602 ~~~~-d~~~~~~~~~--~~~--~~~~~~~~---~~---~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~ 670 (729)
+|.. ++........ .+. ..++.... .. .......++...+.++++|+|+++|++|.++|++++.++++.
T Consensus 204 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~ 283 (318)
T 1l7a_A 204 YPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNH 283 (318)
T ss_dssp SCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred CCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhCCCCEEEEeccCCCCCCcccHHHHHhh
Confidence 8854 3433221110 000 01111000 00 112223456667888899999999999999999999999888
Q ss_pred HHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 671 LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 671 l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+.. +++++++++++|.+. .+..+.+.+||.++|+
T Consensus 284 l~~---~~~~~~~~~~~H~~~-----~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 284 LET---KKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp CCS---SEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred cCC---CeeEEEccCCCCCCc-----chhHHHHHHHHHHHhC
Confidence 764 589999999999832 3568889999999986
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=201.70 Aligned_cols=243 Identities=14% Similarity=0.156 Sum_probs=169.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hhhhHHHhhCCcEEEEecCCCCCC-
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGSTG- 534 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la~~G~~v~~~d~rGs~g- 534 (729)
..+.+++.+..+|..+.+.+|.|++.. +.++.|+||++||+++....+.. ....+.+++.||.|+.+|.++.+.
T Consensus 16 ~~~~~~~~s~~~g~~~~~~v~~P~~~~----~~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~ 91 (280)
T 3i6y_A 16 WHKQYSHVSNTLNCAMRFAIYLPPQAS----TGAKVPVLYWLSGLTCSDENFMQKAGAQRLAAELGIAIVAPDTSPRGEG 91 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGG----TTCCEEEEEEECCTTCCSSHHHHHSCCHHHHHHHTCEEEEECSSCCSTT
T ss_pred cEEEEEEeccccCCeeEEEEEeCCCCC----CCCCccEEEEecCCCCChhHHhhcccHHHHHhhCCeEEEEeCCcccccc
Confidence 346667766557899999999997632 25678999999998655432211 114566677899999999874332
Q ss_pred ----------CchhHH-HhhccCCCc-cc-HHHH-HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEE
Q 004816 535 ----------YGREFR-ERLLGRWGI-VD-VNDC-CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGA 599 (729)
Q Consensus 535 ----------~g~~~~-~~~~~~~~~-~~-~~D~-~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v 599 (729)
.|..+. ......+.. .. .+.+ ..+++++.+...+ ++|++|+|||+||++|+.++. +|++|++++
T Consensus 92 ~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 170 (280)
T 3i6y_A 92 VADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVS 170 (280)
T ss_dssp CCCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEE
T ss_pred cCcccccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEE
Confidence 111111 100001100 01 1222 2445555554433 589999999999999999998 999999999
Q ss_pred EeccccChhHHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCCCC--CCEEEEEeCCCCCCChHH-HHHHHHHHHhCC
Q 004816 600 SLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQ-ARKIYKALKENG 675 (729)
Q Consensus 600 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~--~PvL~i~G~~D~~vp~~~-~~~~~~~l~~~g 675 (729)
+.+|+.+...... ........++ +...+...+|...+.+++ +|+|++||++|.+++.+. +++++++|++.|
T Consensus 171 ~~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l~~~g 245 (280)
T 3i6y_A 171 AFSPINNPVNCPW-----GQKAFTAYLGKDTDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAASSNN 245 (280)
T ss_dssp EESCCCCGGGSHH-----HHHHHHHHHCSCGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHHHHHTT
T ss_pred EeCCccccccCch-----HHHHHHHhcCCchHHHHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHHHHHcC
Confidence 9999887653211 1111122222 445666778877777665 899999999999998755 899999999999
Q ss_pred CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 676 LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 676 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
++++++++|+++|.+ ..+...++..++|+.++|+
T Consensus 246 ~~~~~~~~~g~~H~~---~~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 246 YPLELRSHEGYDHSY---YFIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp CCEEEEEETTCCSSH---HHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEeCCCCccH---HHHHHhHHHHHHHHHhhcc
Confidence 999999999999986 3456788899999999886
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-21 Score=205.63 Aligned_cols=311 Identities=12% Similarity=0.088 Sum_probs=200.9
Q ss_pred ceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEEEe
Q 004816 93 GTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS 171 (729)
Q Consensus 93 ~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~d 171 (729)
.|.||| |+.++|...+ +++..||.++.. +++.++++...... .....|+++++.|+|... +..||++|
T Consensus 40 ~~~~SpDg~~l~~~~~~---~g~~~l~~~d~~-~g~~~~lt~~~~~~------~~~~~~spdg~~l~~~~~-~~~l~~~d 108 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAF---DGPWNYYLLDLN-TQVATQLTEGRGDN------TFGGFLSPDDDALFYVKD-GRNLMRVD 108 (388)
T ss_dssp SCCBCTTSCEEEEEECT---TSSCEEEEEETT-TCEEEECCCSSCBC------SSSCEECTTSSEEEEEET-TTEEEEEE
T ss_pred CccCCCCCCEEEEEEcC---CCCceEEEEeCC-CCceEEeeeCCCCC------ccceEEcCCCCEEEEEeC-CCeEEEEE
Confidence 489999 9999998752 456678888876 34677777543111 012357777778888874 45899999
Q ss_pred CCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC-------------CCCcceEEEEEEcCCCceEEeee
Q 004816 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-------------ALNSTTEIVAIALNGQNIQVLVS 238 (729)
Q Consensus 172 ~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~-------------~~~~~~~l~~~dl~~g~~~~lt~ 238 (729)
+++ ++.+++...+.. ........++|||+.+++........ .......||++|+++++.++++.
T Consensus 109 ~~~--g~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 185 (388)
T 3pe7_A 109 LAT--LEENVVYQVPAE-WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ 185 (388)
T ss_dssp TTT--CCEEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE
T ss_pred CCC--Ccceeeeechhh-cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec
Confidence 998 777766654211 11122334699999988765432210 01123789999999999999988
Q ss_pred CCCeeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEe
Q 004816 239 GSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTD 316 (729)
Q Consensus 239 ~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~ 316 (729)
.......+.||| ||++|+|+...... ....+||++|++ +++. ..+..... . ..+..+.|||||+ |+|.+.
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~--~~~~~l~~~d~~-~~~~--~~l~~~~~-~--~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 186 ENQWLGHPIYRPYDDSTVAFCHEGPHD--LVDARMWLINED-GTNM--RKVKTHAE-G--ESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCTT--TSSCSEEEEETT-SCCC--EESCCCCT-T--EEEEEEEECTTSSCEEEEEE
T ss_pred CCccccccEECCCCCCEEEEEEecCCC--CCcceEEEEeCC-CCce--EEeeeCCC-C--cccccceECCCCCEEEEEec
Confidence 777788899999 99999999843211 124579999987 5543 22222221 1 2345789999999 988887
Q ss_pred cCCCce--EEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEE------CCeEEEEEEECCCC
Q 004816 317 RKNGFW--NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ------NGRSYLGILDDFGH 388 (729)
Q Consensus 317 ~~~g~~--~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~------~g~~~ly~~d~~~g 388 (729)
. .+.. .|+++|+++++.+.++..... ....+. .....|.+ |++.|++...+ .+...||+++++++
T Consensus 258 ~-~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~--~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 258 L-KGSPDRFIYSADPETLENRQLTSMPAC-SHLMSN--YDGSLMVG---DGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp E-TTCCCEEEEEECTTTCCEEEEEEECCE-EEEEEC--TTSSEEEE---EECCC------------CCCCEEEEEETTTT
T ss_pred C-CCCCcceEEEEecCCCceEEEEcCCCc-eeeeec--CCCCeEcc---CCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 6 4543 599999999998888743320 000111 11123333 77778777644 66778999999999
Q ss_pred ceEeeccCCc-----------ceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 389 SLSLLDIPFT-----------DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 389 ~~~~lt~~~~-----------~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+.++|+.... .+..+ ..++++.+++.+......+||++++..+.
T Consensus 331 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 331 TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPESV 386 (388)
T ss_dssp EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCGGG
T ss_pred ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECChhc
Confidence 9998886654 23333 33444444555566677789999987664
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=203.08 Aligned_cols=236 Identities=16% Similarity=0.190 Sum_probs=168.7
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-CccccchhhhHHHhhC-CcEEEEecCCCC
Q 004816 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSR-GWAFVDVNYGGS 532 (729)
Q Consensus 455 ~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~la~~-G~~v~~~d~rGs 532 (729)
....+.+++... +| .+.+++|.|.+. .++.|+||++|||++. .....+...+..|+++ ||.|+.+||||.
T Consensus 45 ~~~~~~~~i~~~-~g-~l~~~~~~P~~~------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~ 116 (310)
T 2hm7_A 45 VAEVREFDMDLP-GR-TLKVRMYRPEGV------EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLA 116 (310)
T ss_dssp CSEEEEEEEEET-TE-EEEEEEEECTTC------CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCT
T ss_pred cceEEEEEeccC-CC-eEEEEEEecCCC------CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCC
Confidence 345677888886 55 999999999651 3457999999997643 3344567778888886 999999999987
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC---CCCCCcEEEEEcChHHHHHHHHHh-CCC----cceEEEEeccc
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA-FRD----TFKAGASLYGV 604 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~-~~~----~~~a~v~~~~~ 604 (729)
+++... ...+|+.++++|+.+.. .+|.++++|+|||+||.+++.++. +++ +++++|+.+|.
T Consensus 117 ~~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~ 185 (310)
T 2hm7_A 117 PEHKFP-----------AAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPS 185 (310)
T ss_dssp TTSCTT-----------HHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCC
T ss_pred CCCCCC-----------ccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCC
Confidence 764321 23689999999998874 367789999999999999999887 554 79999999998
Q ss_pred cChh--H----Hhhhcc--hh----hhhhhhhhcCChh--hhhhcCcccc--cCCCCCCEEEEEeCCCCCCChHHHHHHH
Q 004816 605 ADLS--M----LRAETH--KF----ESRYIDNLVGSEK--DYYEKSPINF--VDKFSCPIILFQGLEDKVVPPDQARKIY 668 (729)
Q Consensus 605 ~d~~--~----~~~~~~--~~----~~~~~~~~~~~~~--~~~~~sp~~~--~~~i~~PvL~i~G~~D~~vp~~~~~~~~ 668 (729)
.+.. . +..... .. ...+......... .....+|+.. +..+ +|+|+++|++|.++ .++.+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~~--~~~~~~~ 262 (310)
T 2hm7_A 186 TGYDPAHPPASIEENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSGL-PPAYIATAQYDPLR--DVGKLYA 262 (310)
T ss_dssp CCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTC-CCEEEEEEEECTTH--HHHHHHH
T ss_pred cCCCcccCCcchhhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccccCC-CCEEEEEecCCCch--HHHHHHH
Confidence 7754 1 100000 00 0011111111111 1112344432 2333 49999999999987 6789999
Q ss_pred HHHHhCCCCEEEEEECCCCcccCC----cccHHHHHHHHHHHHHHHhC
Q 004816 669 KALKENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 669 ~~l~~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 712 (729)
+.|+.+|.+++++++++++|+|.. .+...++.+.+.+||+++++
T Consensus 263 ~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 263 EALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp HHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998753 24457888999999999874
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-22 Score=209.72 Aligned_cols=234 Identities=19% Similarity=0.234 Sum_probs=168.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.+.+.+. +|.++.++++.|.+ .++.|+||++||+++... .+.... .++++||.|+++|+||.++++
T Consensus 81 ~~~~~~~~~~-~g~~l~~~~~~P~~-------~~~~p~vv~~HG~g~~~~--~~~~~~-~~~~~G~~v~~~D~rG~g~s~ 149 (346)
T 3fcy_A 81 ECYDLYFTGV-RGARIHAKYIKPKT-------EGKHPALIRFHGYSSNSG--DWNDKL-NYVAAGFTVVAMDVRGQGGQS 149 (346)
T ss_dssp EEEEEEEECG-GGCEEEEEEEEESC-------SSCEEEEEEECCTTCCSC--CSGGGH-HHHTTTCEEEEECCTTSSSSC
T ss_pred EEEEEEEEcC-CCCEEEEEEEecCC-------CCCcCEEEEECCCCCCCC--Chhhhh-HHHhCCcEEEEEcCCCCCCCC
Confidence 4577888887 89999999999975 356799999999865543 333333 567899999999999988655
Q ss_pred hhHHHhhc----c--CCCc----------ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEE
Q 004816 537 REFRERLL----G--RWGI----------VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGA 599 (729)
Q Consensus 537 ~~~~~~~~----~--~~~~----------~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v 599 (729)
........ + ..+. ..++|+.++++++.....+|.+||+++|||+||++++.++. +|+ ++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~v 228 (346)
T 3fcy_A 150 QDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVV 228 (346)
T ss_dssp CCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEE
T ss_pred CCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEE
Confidence 43211000 0 0000 12689999999999988888899999999999999999998 776 99999
Q ss_pred EeccccC-hhHHhhhc-c--hh--hhhhhhhh---cCC----hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHH
Q 004816 600 SLYGVAD-LSMLRAET-H--KF--ESRYIDNL---VGS----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARK 666 (729)
Q Consensus 600 ~~~~~~d-~~~~~~~~-~--~~--~~~~~~~~---~~~----~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~ 666 (729)
+.+|... ........ . .+ ...+.... ... ...+...++...+.++++|+|+++|++|.++|++.+.+
T Consensus 229 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G~~D~~~~~~~~~~ 308 (346)
T 3fcy_A 229 SEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPPSTVFA 308 (346)
T ss_dssp EESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEETTCSSSCHHHHHH
T ss_pred ECCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEeeCCCCcCCHHHHHH
Confidence 9999653 33222111 0 00 01111100 001 12233456667788999999999999999999999988
Q ss_pred HHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 667 IYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 667 ~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+++.+.. +++++++|+++|.+. .+..+.+.+||++.
T Consensus 309 ~~~~~~~---~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~l 344 (346)
T 3fcy_A 309 AYNNIQS---KKDIKVYPDYGHEPM-----RGFGDLAMQFMLEL 344 (346)
T ss_dssp HHTTCCS---SEEEEEETTCCSSCC-----TTHHHHHHHHHHTT
T ss_pred HHHhcCC---CcEEEEeCCCCCcCH-----HHHHHHHHHHHHHh
Confidence 8877754 789999999999876 35677888998763
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=187.30 Aligned_cols=206 Identities=17% Similarity=0.142 Sum_probs=160.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCC---CCccccchhhhHHHhhCCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT---SEARGILNLSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~---~~~~~~~~~~~~~la~~G~~v~~~d~rGs~ 533 (729)
..+.+.+.+. +| .+.++++.|.+.. .++.|+||++||++. ......+...++.|+++||.|+++|+||.+
T Consensus 9 ~~~~~~~~~~-~g-~~~~~~~~p~~~~-----~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g 81 (220)
T 2fuk_A 9 ESAALTLDGP-VG-PLDVAVDLPEPDV-----AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVG 81 (220)
T ss_dssp SCEEEEEEET-TE-EEEEEEECCCTTS-----CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTST
T ss_pred cceEEEEeCC-CC-eEEEEEEeCCCCC-----ccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 5678889887 77 8999999997610 145799999999642 222334567888999999999999999876
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhh
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAE 613 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~ 613 (729)
.....+ .......+|+.++++++.++. +.++++++|||+||.+++.++... +++++|+.+|..+...
T Consensus 82 ~s~~~~------~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~-~v~~~v~~~~~~~~~~---- 148 (220)
T 2fuk_A 82 TSAGSF------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL-EPQVLISIAPPAGRWD---- 148 (220)
T ss_dssp TCCSCC------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH-CCSEEEEESCCBTTBC----
T ss_pred CCCCCc------ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc-cccEEEEecccccchh----
Confidence 544322 122345899999999999874 567999999999999999999833 8999999999866432
Q ss_pred cchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc
Q 004816 614 THKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA 693 (729)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~ 693 (729)
+ ..+. ...|+|+++|++|..+|++.+.++++.++ .+++++++++++|.+..
T Consensus 149 ------------------~------~~~~-~~~p~l~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~H~~~~- 199 (220)
T 2fuk_A 149 ------------------F------SDVQ-PPAQWLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMPDTSHFFHR- 199 (220)
T ss_dssp ------------------C------TTCC-CCSSEEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEETTCCTTCTT-
T ss_pred ------------------h------hhcc-cCCcEEEEECCCCcccCHHHHHHHHHHhC---cCCcEEEeCCCCceehh-
Confidence 0 0011 15789999999999999999988888774 35799999999998765
Q ss_pred ccHHHHHHHHHHHHHHHhC
Q 004816 694 ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 694 ~~~~~~~~~~~~fl~~~l~ 712 (729)
...+..+.+.+|+.+++.
T Consensus 200 -~~~~~~~~i~~~l~~~l~ 217 (220)
T 2fuk_A 200 -KLIDLRGALQHGVRRWLP 217 (220)
T ss_dssp -CHHHHHHHHHHHHGGGCS
T ss_pred -hHHHHHHHHHHHHHHHhh
Confidence 356788899999999986
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=207.92 Aligned_cols=206 Identities=18% Similarity=0.191 Sum_probs=155.2
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCC-ccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
..+.+. . ++. ...+|.|.+ ..++.|+||++|||++.. ....+...++.|+++||.|+.+||||+++...
T Consensus 59 ~~i~y~-~-~~~--~~~~~~p~~------~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~~ 128 (303)
T 4e15_A 59 DHLRYG-E-GRQ--LVDVFYSEK------TTNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVTL 128 (303)
T ss_dssp EEEECS-S-TTC--EEEEEECTT------CCTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSCH
T ss_pred eeeccC-C-CCc--EEEEEecCC------CCCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCCh
Confidence 344444 3 444 445666754 245689999999986533 33446667889999999999999998776432
Q ss_pred hHHHhhccCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh-CC-------CcceEEEEeccccChh
Q 004816 538 EFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-FR-------DTFKAGASLYGVADLS 608 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~~-------~~~~a~v~~~~~~d~~ 608 (729)
. ...+|+.++++|+.+. ...+.++|+|+|||+||++++.++. .. ++++++|+.+|+.++.
T Consensus 129 ~-----------~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~ 197 (303)
T 4e15_A 129 E-----------QLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLR 197 (303)
T ss_dssp H-----------HHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCH
T ss_pred h-----------HHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccH
Confidence 1 2368899999999773 2245789999999999999999887 32 3899999999999987
Q ss_pred HHhhhcchhhhhhhhhhc-CChhhhhhcCcc-cccCCC----CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 609 MLRAETHKFESRYIDNLV-GSEKDYYEKSPI-NFVDKF----SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~-~~~~~i----~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
.+...... +....+ ...+.+...+|+ ..+..+ ++|+|++||++|.++|+.++.+++++|+++|.++++++
T Consensus 198 ~~~~~~~~----~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 273 (303)
T 4e15_A 198 ELSNLESV----NPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTL 273 (303)
T ss_dssp HHHTCTTT----SGGGTTCCCTTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hhhccccc----chhhhhcCCHHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHCCCceEEEE
Confidence 65432111 112222 244566677887 566665 89999999999999999999999999999999999999
Q ss_pred ECCCCcc
Q 004816 683 YEGEQHG 689 (729)
Q Consensus 683 ~~~~gH~ 689 (729)
+|+++|.
T Consensus 274 ~~g~~H~ 280 (303)
T 4e15_A 274 FKGYDHF 280 (303)
T ss_dssp EEEEETT
T ss_pred eCCCCch
Confidence 9999994
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=202.04 Aligned_cols=237 Identities=17% Similarity=0.164 Sum_probs=167.8
Q ss_pred CcEEEEeeccCCCe-EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-CccccchhhhHHHhh-CCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQ-KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTS-RGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~-~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~la~-~G~~v~~~d~rGs~ 533 (729)
..+.+++.+. +|. .+.+++|.|.+ ..++.|+||++||+++. .....+...+..|++ .||.|+.+||||.+
T Consensus 50 ~~~~~~i~~~-~g~~~l~~~~~~P~~------~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~ 122 (323)
T 1lzl_A 50 SLRELSAPGL-DGDPEVKIRFVTPDN------TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAP 122 (323)
T ss_dssp EEEEEEECCS-TTCCCEEEEEEEESS------CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred eEEEEEecCC-CCCceeEEEEEecCC------CCCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCC
Confidence 4677888887 776 79999999865 13567999999998643 223345567777877 59999999999877
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh-CCC----cceEEEEecccc
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-FRD----TFKAGASLYGVA 605 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~~~----~~~a~v~~~~~~ 605 (729)
++... ...+|+.++++|+.+. ..+|+++|+|+|||+||++++.++. +++ .++++++.+|+.
T Consensus 123 ~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~ 191 (323)
T 1lzl_A 123 ETTFP-----------GPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPEL 191 (323)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCC
T ss_pred CCCCC-----------chHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCcc
Confidence 54211 2368899999999874 2467789999999999999999886 444 599999999988
Q ss_pred ChhHHhhhcch------h----hhhhhhhhcCC-------hhhhhhcCcccccCCCC--CCEEEEEeCCCCCCChHHHHH
Q 004816 606 DLSMLRAETHK------F----ESRYIDNLVGS-------EKDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQARK 666 (729)
Q Consensus 606 d~~~~~~~~~~------~----~~~~~~~~~~~-------~~~~~~~sp~~~~~~i~--~PvL~i~G~~D~~vp~~~~~~ 666 (729)
+.......... + ...+.....+. .......+|+.. ..++ +|+|+++|++|.++ .++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~~~--~~~~~ 268 (323)
T 1lzl_A 192 DDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDPLR--DEGIE 268 (323)
T ss_dssp CTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCTTH--HHHHH
T ss_pred CCCcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccC-cccCCCChhheEECCcCCch--HHHHH
Confidence 75421110000 0 00011111111 111222344432 1222 79999999999986 68899
Q ss_pred HHHHHHhCCCCEEEEEECCCCcccCCc---ccHHHHHHHHHHHHHHHhCCC
Q 004816 667 IYKALKENGLPVALVEYEGEQHGFRKA---ENIKFTLEQQMVFFARVVGHF 714 (729)
Q Consensus 667 ~~~~l~~~g~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~fl~~~l~~~ 714 (729)
++++|+++|++++++++++++|++... +...++++.+.+||++++...
T Consensus 269 ~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 319 (323)
T 1lzl_A 269 YALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLRSL 319 (323)
T ss_dssp HHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999987532 335688999999999999743
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=196.79 Aligned_cols=234 Identities=17% Similarity=0.177 Sum_probs=167.3
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-CccccchhhhHHHhhC-CcEEEEecCCCCC
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSR-GWAFVDVNYGGST 533 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~la~~-G~~v~~~d~rGs~ 533 (729)
...+.+++... +| .+.+++|.|.+ .++.|+||++|||++. .....+...+..|+.+ ||.|+.+||||.+
T Consensus 63 ~~~~~~~i~~~-~~-~i~~~iy~P~~-------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~ 133 (323)
T 3ain_A 63 GKIEDITIPGS-ET-NIKARVYYPKT-------QGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAP 133 (323)
T ss_dssp SEEEEEEEECS-SS-EEEEEEEECSS-------CSCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred cEEEEEEecCC-CC-eEEEEEEecCC-------CCCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCC
Confidence 45677888876 66 89999999865 3457999999998642 3344567778888864 9999999999877
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC-C-CCCcEEEEEcChHHHHHHHHHh-CCCcc---eEEEEeccccCh
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK-A-DEKRLCITGGSAGGYTTLAALA-FRDTF---KAGASLYGVADL 607 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~-~-d~~ri~i~G~S~GG~~a~~~~~-~~~~~---~a~v~~~~~~d~ 607 (729)
.+.. ....+|+.++++|+.+... . |.+||+|+|+|+||.+|+.++. ++++. +++|+.+|+.+.
T Consensus 134 ~~~~-----------p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~ 202 (323)
T 3ain_A 134 ENKF-----------PAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSF 202 (323)
T ss_dssp TSCT-----------THHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSC
T ss_pred CCCC-----------cchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccC
Confidence 5321 1237899999999988631 1 7889999999999999999887 66555 899999998764
Q ss_pred hHHhhhc------chh----hhhhhhhhcCChh--hhhhcCcccc-cCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC
Q 004816 608 SMLRAET------HKF----ESRYIDNLVGSEK--DYYEKSPINF-VDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 674 (729)
Q Consensus 608 ~~~~~~~------~~~----~~~~~~~~~~~~~--~~~~~sp~~~-~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~ 674 (729)
....... ..+ ...+......... .....+|+.. +..+ +|+|+++|++|.++ .++.+++++|+.+
T Consensus 203 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~l-~P~lii~G~~D~l~--~~~~~~a~~l~~a 279 (323)
T 3ain_A 203 DLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILADLNDL-PPALIITAEHDPLR--DQGEAYANKLLQS 279 (323)
T ss_dssp CSCCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGSCCTTC-CCEEEEEETTCTTH--HHHHHHHHHHHHT
T ss_pred CCCCccHHHhccCCCCCHHHHHHHHHHhCCCCcccCCcccCcccCcccCC-CHHHEEECCCCccH--HHHHHHHHHHHHc
Confidence 3211000 000 0011111111111 1112345443 2222 49999999999986 5789999999999
Q ss_pred CCCEEEEEECCCCcccCC----cccHHHHHHHHHHHHHHHhC
Q 004816 675 GLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 675 g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 712 (729)
|++++++++++++|+|.. .+...++++.+.+||++++.
T Consensus 280 g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 321 (323)
T 3ain_A 280 GVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFY 321 (323)
T ss_dssp TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999754 24567889999999999875
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-22 Score=204.88 Aligned_cols=234 Identities=17% Similarity=0.116 Sum_probs=167.2
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCC-ccccchhhhHHHh-hCCcEEEEecCCCCC
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWT-SRGWAFVDVNYGGST 533 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~la-~~G~~v~~~d~rGs~ 533 (729)
...+.+++.+. +|..+.+++|.|.+ ++.|+||++|||++.. ....+...+..|+ +.||.|+.+|||+++
T Consensus 58 ~~~~~~~i~~~-~G~~i~~~~~~P~~--------~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p 128 (317)
T 3qh4_A 58 VAVADDVVTGE-AGRPVPVRIYRAAP--------TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAP 128 (317)
T ss_dssp CEEEEEEEECT-TSCEEEEEEEECSC--------SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred ceEEEEEecCC-CCCeEEEEEEecCC--------CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCC
Confidence 35678888887 88899999999854 3579999999986432 2334566677777 459999999999877
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh-CCC----cceEEEEecccc
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-FRD----TFKAGASLYGVA 605 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~~~----~~~a~v~~~~~~ 605 (729)
++.. ....+|+.++++|+.++ ..+|++||+|+|+|+||++|+.++. +++ .+++.++.+|+.
T Consensus 129 ~~~~-----------p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~ 197 (317)
T 3qh4_A 129 EHPY-----------PAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVL 197 (317)
T ss_dssp TSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCC
T ss_pred CCCC-----------chHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECcee
Confidence 5432 13378999999999886 4578899999999999999998886 333 599999999998
Q ss_pred ChhHHhhh-----cchhh----hhhhhhhcCChhhhhhcCcccccCCCC--CCEEEEEeCCCCCCChHHHHHHHHHHHhC
Q 004816 606 DLSMLRAE-----THKFE----SRYIDNLVGSEKDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQARKIYKALKEN 674 (729)
Q Consensus 606 d~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~sp~~~~~~i~--~PvL~i~G~~D~~vp~~~~~~~~~~l~~~ 674 (729)
+....... ...+. ..+.....+........+|... ..++ +|+|++||++|.+++ ++.+++++|+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~l~~lpP~li~~G~~D~~~~--~~~~~a~~l~~~ 274 (317)
T 3qh4_A 198 DDRPTASRSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGRR-GQLAGLPATLITCGEIDPFRD--EVLDYAQRLLGA 274 (317)
T ss_dssp CSSCCHHHHHTTTCSSSCHHHHHHHHHHHHTTCCCCTTTCGGGC-SCCTTCCCEEEEEEEESTTHH--HHHHHHHHHHHT
T ss_pred cCCCCcCHHHhcCCCCcCHHHHHHHHHHhcCCCCCCcccCCCcc-cccCCCCceeEEecCcCCCch--hHHHHHHHHHHc
Confidence 86411000 00000 0011111111111111233222 1222 599999999998864 789999999999
Q ss_pred CCCEEEEEECCCCcccC----CcccHHHHHHHHHHHHHHHhC
Q 004816 675 GLPVALVEYEGEQHGFR----KAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 675 g~~~~~~~~~~~gH~~~----~~~~~~~~~~~~~~fl~~~l~ 712 (729)
|+++++++|++++|+|. ..+...++++.+.+||+++|+
T Consensus 275 g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 275 GVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp TCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 99999999999999864 235567899999999999886
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=199.06 Aligned_cols=242 Identities=13% Similarity=0.160 Sum_probs=166.8
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc-chhhhHHHhhCCcEEEEecCCCCC---
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGST--- 533 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~-~~~~~~~la~~G~~v~~~d~rGs~--- 533 (729)
.+.+.+.+..+|..+.+.++.|++.. +.+++|+||++||+++....+. .....+.++++||.|+.+|.++.+
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~----~~~~~P~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~ 90 (280)
T 3ls2_A 15 HKQYTHSAVSTHCTMRFAVFLPPGAS----ESNKVPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTSPRGDNV 90 (280)
T ss_dssp EEEEEEEETTTTEEEEEEEEECTTCB----TTBCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTS
T ss_pred EEEEEEechhcCCceEEEEEcCCCCC----CCCCcCEEEEeCCCCCChhhhhcchhHHHHHhhCCeEEEEeCCccccccc
Confidence 45667766547889999999998732 2567899999999865443221 112456677789999999976422
Q ss_pred --------CCchhHHH-hhccCCC-cccHHH-H-HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEE
Q 004816 534 --------GYGREFRE-RLLGRWG-IVDVND-C-CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS 600 (729)
Q Consensus 534 --------g~g~~~~~-~~~~~~~-~~~~~D-~-~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~ 600 (729)
|.|..+.. .....+. .....+ + ..+++++.+...+ .+|++|+|||+||++|+.++. +|++|+++++
T Consensus 91 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 169 (280)
T 3ls2_A 91 PNEDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPV-TSTKAISGHSMGGHGALMIALKNPQDYVSASA 169 (280)
T ss_dssp CCCSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEE
T ss_pred ccccccccccCCccccccccccccccccHHHHHHHHHHHHHHhhCCC-CCCeEEEEECHHHHHHHHHHHhCchhheEEEE
Confidence 11222111 1000110 011122 2 2334455444333 489999999999999999988 9999999999
Q ss_pred eccccChhHHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCCCC----CCEEEEEeCCCCCCChHH-HHHHHHHHHhC
Q 004816 601 LYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS----CPIILFQGLEDKVVPPDQ-ARKIYKALKEN 674 (729)
Q Consensus 601 ~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~----~PvL~i~G~~D~~vp~~~-~~~~~~~l~~~ 674 (729)
.+|+.+....... .......++ ....+...+|...+.+++ +|+|++||++|.+++.+. +.+++++|+++
T Consensus 170 ~s~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~~ 244 (280)
T 3ls2_A 170 FSPIVNPINCPWG-----VKAFTGYLGADKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVAKQK 244 (280)
T ss_dssp ESCCSCGGGSHHH-----HHHHHHHHCSCGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHHHHH
T ss_pred ecCccCcccCcch-----hhHHHhhcCchHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHHHHHHh
Confidence 9998876532111 111122222 345666777777776664 599999999999999854 88999999999
Q ss_pred CCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 675 GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 675 g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
|++++++++|+++|.|. .+...+...++|+.++|+
T Consensus 245 g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 245 DYPLTLEMQTGYDHSYF---FISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp TCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred CCCceEEEeCCCCCchh---hHHHHHHHHHHHHHHHhc
Confidence 99999999999999863 456778889999999885
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=204.85 Aligned_cols=236 Identities=14% Similarity=0.159 Sum_probs=161.6
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCC----------CCCCCCCCCEEEEEcCCCCCCccc---cchhhhHHHh-hCCcE
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIY----------QASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYWT-SRGWA 523 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~----------~~~~~~~~P~vv~~hGg~~~~~~~---~~~~~~~~la-~~G~~ 523 (729)
.+.+.+.. +..+.+.+|.|++... .+...++.|+||++|||++..... .|...++.|+ ++||.
T Consensus 72 ~~dv~~~~---~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~g~~ 148 (351)
T 2zsh_A 72 SFDVLIDR---RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCV 148 (351)
T ss_dssp EEEEEEET---TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTSE
T ss_pred EEEEEecC---CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHcCCE
Confidence 34455544 4456777888865210 000135679999999986543222 2666778888 78999
Q ss_pred EEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC----CCCCC-cEEEEEcChHHHHHHHHHh-CCC---c
Q 004816 524 FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG----KADEK-RLCITGGSAGGYTTLAALA-FRD---T 594 (729)
Q Consensus 524 v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-ri~i~G~S~GG~~a~~~~~-~~~---~ 594 (729)
|+.+||||++++... ..++|+.++++|+.++. .+|.+ ||+|+|||+||.+|+.++. +++ +
T Consensus 149 vv~~d~rg~~~~~~~-----------~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~~~~ 217 (351)
T 2zsh_A 149 VVSVNYRRAPENPYP-----------CAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID 217 (351)
T ss_dssp EEEECCCCTTTSCTT-----------HHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTTTCC
T ss_pred EEEecCCCCCCCCCc-----------hhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhccCCC
Confidence 999999997653211 34789999999998864 47889 9999999999999999987 777 8
Q ss_pred ceEEEEeccccChhHHhhhc-----ch-----hhhhhhhhhc--CChhhhhhcCcc----cccCCCCC-CEEEEEeCCCC
Q 004816 595 FKAGASLYGVADLSMLRAET-----HK-----FESRYIDNLV--GSEKDYYEKSPI----NFVDKFSC-PIILFQGLEDK 657 (729)
Q Consensus 595 ~~a~v~~~~~~d~~~~~~~~-----~~-----~~~~~~~~~~--~~~~~~~~~sp~----~~~~~i~~-PvL~i~G~~D~ 657 (729)
++++|+.+|+.+........ .. ....+..... +........+|+ ..+.++++ |+|+++|++|.
T Consensus 218 v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~pP~Lii~G~~D~ 297 (351)
T 2zsh_A 218 VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDL 297 (351)
T ss_dssp CCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTTCCCCEEEEEEETTST
T ss_pred eeEEEEECCccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhhCCCCCEEEEEcCCCc
Confidence 99999999987643211000 00 0000111111 001111112222 23455565 99999999999
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC---cccHHHHHHHHHHHHHH
Q 004816 658 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK---AENIKFTLEQQMVFFAR 709 (729)
Q Consensus 658 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~fl~~ 709 (729)
+++ ++.+++++|++.|.+++++++++++|.+.. .+...++++.+.+||++
T Consensus 298 ~~~--~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 298 IRD--WQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp THH--HHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred chH--HHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 875 678899999999999999999999998754 35667888999999875
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-21 Score=219.70 Aligned_cols=245 Identities=17% Similarity=0.183 Sum_probs=175.1
Q ss_pred CCeE--EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc--------------------------------------
Q 004816 468 PGQK--AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-------------------------------------- 507 (729)
Q Consensus 468 dG~~--l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~-------------------------------------- 507 (729)
||.+ |.++++.|++ .++.|+||..|+.......
T Consensus 182 DG~~d~L~a~l~~P~~-------~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 254 (763)
T 1lns_A 182 RGENDLIKIQIIRPKS-------TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKE 254 (763)
T ss_dssp SSSCCEEEEEEEECCC-------SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCC
T ss_pred CCCeeeEEEEEEecCC-------CCcccEEEecCCcCCCCcccccccccccccccccccCcccccccccccccccccccc
Confidence 8988 9999999976 4578999988775322100
Q ss_pred --------ccc-----hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC---------
Q 004816 508 --------GIL-----NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS--------- 565 (729)
Q Consensus 508 --------~~~-----~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--------- 565 (729)
..| ....++|+++||+|+.+|+||.|+++..+ ..++..+.+|+.++++||..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~-----~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~ 329 (763)
T 1lns_A 255 LPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQ-----TSGDYQQIYSMTAVIDWLNGRARAYTSRKK 329 (763)
T ss_dssp CCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCC-----CTTSHHHHHHHHHHHHHHTTSSCEESSTTC
T ss_pred ccccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcC-----CCCCHHHHHHHHHHHHHHhhcccccccccc
Confidence 011 12358899999999999999988765431 223335689999999999853
Q ss_pred -----CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcc------hhh---------h---h-
Q 004816 566 -----GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH------KFE---------S---R- 620 (729)
Q Consensus 566 -----~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~------~~~---------~---~- 620 (729)
...+.+||+++|+||||++++.++. +|+.++++|+.+|+.++..+..... .+. . .
T Consensus 330 ~~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~~ 409 (763)
T 1lns_A 330 THEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRN 409 (763)
T ss_dssp CCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGG
T ss_pred cccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhhh
Confidence 1234579999999999999999988 8889999999999987654332110 000 0 0
Q ss_pred ------------h---hhhh---c--C---ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCC
Q 004816 621 ------------Y---IDNL---V--G---SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 677 (729)
Q Consensus 621 ------------~---~~~~---~--~---~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~ 677 (729)
+ ...+ . . ..+.|...++..++++|++|+|++||.+|..||+.++.+++++|+. +.+
T Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp~~~a~~l~~al~~-~~~ 488 (763)
T 1lns_A 410 LDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE-GHA 488 (763)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-TCC
T ss_pred cCcchhhhHHHHHHHHHHHHHhhhhhccCchhHHhhccChhhHhhcCCCCEEEEEECCCCCCChHHHHHHHHhhcc-CCC
Confidence 0 0000 0 0 0123445678888999999999999999999999999999999987 667
Q ss_pred EEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCCCCCCCCCCceecc
Q 004816 678 VALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADEIIPIKID 726 (729)
Q Consensus 678 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~ 726 (729)
.++++ ++++|..........+.+.+.+||+++|++.++....|++.+.
T Consensus 489 ~~l~i-~~~gH~~~~~~~~~~~~~~i~~Ffd~~Lkg~~ng~~~P~v~~~ 536 (763)
T 1lns_A 489 KHAFL-HRGAHIYMNSWQSIDFSETINAYFVAKLLDRDLNLNLPPVILQ 536 (763)
T ss_dssp EEEEE-ESCSSCCCTTBSSCCHHHHHHHHHHHHHTTCCCCCCCCSEEEE
T ss_pred eEEEE-eCCcccCccccchHHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Confidence 76655 5678986432222346788999999999976544466777664
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-20 Score=186.27 Aligned_cols=226 Identities=13% Similarity=0.161 Sum_probs=158.6
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc-cccc-hhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGIL-NLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~-~~~~-~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
....+... +|..+.+.++.|.+ .++.|+||++||+++... ...+ ....+.+++. |.|+++|+||++...
T Consensus 4 ~~~~~~~~-dg~~l~~~~~~p~~-------~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~ 74 (275)
T 3h04_A 4 IKYKVITK-DAFALPYTIIKAKN-------QPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVS 74 (275)
T ss_dssp EEEEEECT-TSCEEEEEEECCSS-------SSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSC
T ss_pred eEEEEecC-CcEEEEEEEEccCC-------CCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCccc
Confidence 45667776 99999999999865 346799999999863222 2223 3667777777 999999999876432
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHh-hhcc
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLR-AETH 615 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~-~~~~ 615 (729)
.. ...+|+.++++++.+. ++.++++|+|||+||++++.++.. ++++++|+.+|..++.... ....
T Consensus 75 ~~-----------~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~-~~v~~~v~~~~~~~~~~~~~~~~~ 140 (275)
T 3h04_A 75 LD-----------CIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD-RDIDGVIDFYGYSRINTEPFKTTN 140 (275)
T ss_dssp HH-----------HHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH-SCCSEEEEESCCSCSCSHHHHSCC
T ss_pred cc-----------hhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc-CCccEEEecccccccccccccccc
Confidence 21 2378999999999987 567899999999999999999888 8899999999988652211 1000
Q ss_pred hh--------hhhhhhhhcC-------------------------------ChhhhhhcC-cccccCCCCCCEEEEEeCC
Q 004816 616 KF--------ESRYIDNLVG-------------------------------SEKDYYEKS-PINFVDKFSCPIILFQGLE 655 (729)
Q Consensus 616 ~~--------~~~~~~~~~~-------------------------------~~~~~~~~s-p~~~~~~i~~PvL~i~G~~ 655 (729)
.. .......+.. ....+.... ....+.+++ |+|+++|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~lii~G~~ 219 (275)
T 3h04_A 141 SYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PVFIAHCNG 219 (275)
T ss_dssp HHHHHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CEEEEEETT
T ss_pred chhhcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CEEEEecCC
Confidence 00 0000000000 000000000 111236667 999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccH--HHHHHHHHHHHHHHhC
Q 004816 656 DKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENI--KFTLEQQMVFFARVVG 712 (729)
Q Consensus 656 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~--~~~~~~~~~fl~~~l~ 712 (729)
|.++|++++.++++.+. ..+++++++++|.+...... .+.++.+.+|+++++.
T Consensus 220 D~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 220 DYDVPVEESEHIMNHVP----HSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp CSSSCTHHHHHHHTTCS----SEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCChHHHHHHHHhcC----CceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 99999999888876554 56899999999997655443 7889999999999874
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=196.76 Aligned_cols=242 Identities=14% Similarity=0.157 Sum_probs=167.2
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-hhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
.+.+++.+...|..+.+.++.|++.. .++.|+||++||+++....+... ...+.+.+.||.|+.+|+||.+...
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~-----~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~ 89 (278)
T 3e4d_A 15 QGVFSHQSETLKSEMTFAVYVPPKAI-----HEPCPVVWYLSGLTCTHANVMEKGEYRRMASELGLVVVCPDTSPRGNDV 89 (278)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG-----TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTS
T ss_pred EEEEEEeccccCCcceEEEEcCCCCC-----CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEecCCcccCccc
Confidence 35566665547889999999997621 45789999999986544322111 1445556679999999998765432
Q ss_pred hh----HH---------HhhccCC-CcccHHHH--HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEE
Q 004816 537 RE----FR---------ERLLGRW-GIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGA 599 (729)
Q Consensus 537 ~~----~~---------~~~~~~~-~~~~~~D~--~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v 599 (729)
.. |. ......+ ......+. ..+++++.+...+|+++++|+|||+||++|+.++. +|++|++++
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 169 (278)
T 3e4d_A 90 PDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCS 169 (278)
T ss_dssp CCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEE
T ss_pred ccccccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEE
Confidence 11 10 0000000 01112222 24666776665677799999999999999999988 999999999
Q ss_pred EeccccChhHHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCCCC--CCEEEEEeCCCCCCChHH-HHHHHHHHHhCC
Q 004816 600 SLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQ-ARKIYKALKENG 675 (729)
Q Consensus 600 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~--~PvL~i~G~~D~~vp~~~-~~~~~~~l~~~g 675 (729)
+.+|+.+....... ...+...++ ....+...+|...+.+++ +|+|++||++|.++|... +.++++.|++.|
T Consensus 170 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~~g 244 (278)
T 3e4d_A 170 AFAPIVAPSSADWS-----EPALEKYLGADRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEEAIKGTD 244 (278)
T ss_dssp EESCCSCGGGCTTT-----HHHHHHHHCSCGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHHHHTTSS
T ss_pred EeCCcccccCCccc-----hhhHHHhcCCcHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHHHHHHcC
Confidence 99998876432111 111122222 345566677776666554 599999999999987532 789999999999
Q ss_pred CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 676 LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 676 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.+++++++|+++|.+. .+...++.+++|+.++|+
T Consensus 245 ~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 245 IGLTLRMHDRYDHSYY---FISTFMDDHLKWHAERLG 278 (278)
T ss_dssp CEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEeCCCCcCHH---HHHHHHHHHHHHHHHhcC
Confidence 9999999999999863 455778888999998874
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-20 Score=199.57 Aligned_cols=245 Identities=14% Similarity=0.145 Sum_probs=183.9
Q ss_pred CCEEEEEECCC-----CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 154 GDTVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 154 ~~~i~~~~~~~-----~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
+++++|..... +.|+++|+++ +..+.++.. ...+..++|||||++|+++..+.. ...|+++|+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l~~~----~~~v~~~~~Spdg~~la~~s~~~~------~~~i~~~d~ 210 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESG------RSALVIQTL 210 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEE----SSCEEEEEECTTSSEEEEEECTTS------SCEEEEEET
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC--CCCEEEeCC----CCcceeeEEcCCCCEEEEEEecCC------CcEEEEEEC
Confidence 55777776542 5899999987 778888765 345688999999999999986542 257999999
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
++++.++++........++|||||++|+|+.... ...+||++|+. +++. . .+.... ..+..+.|+||
T Consensus 211 ~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~-----g~~~i~~~d~~-~~~~--~-~l~~~~----~~~~~~~~spd 277 (415)
T 2hqs_A 211 ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLA-SGQI--R-QVTDGR----SNNTEPTWFPD 277 (415)
T ss_dssp TTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT-----SSCEEEEEETT-TCCE--E-ECCCCS----SCEEEEEECTT
T ss_pred CCCcEEEeecCCCcccCEEEcCCCCEEEEEEecC-----CCceEEEEECC-CCCE--E-eCcCCC----CcccceEECCC
Confidence 9999888887666778899999999999887432 24579999998 6664 2 333333 44567899999
Q ss_pred Cc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
|+ |++.+.. .+..+||++|+.+++.+.++........+.|++ +++.|++.+..++...|+++++++
T Consensus 278 g~~l~~~s~~-~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp------------dG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 278 SQNLAFTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp SSEEEEEECT-TSSCEEEEEETTSSCCEECCCSSSEEEEEEECT------------TSSEEEEEEECSSCEEEEEEETTT
T ss_pred CCEEEEEECC-CCCcEEEEEECCCCCEEEEecCCCcccCeEECC------------CCCEEEEEECcCCceEEEEEECCC
Confidence 99 8888876 577899999999998777764443444456665 888898888877888999999999
Q ss_pred CceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 388 HSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 388 g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
++.+.++... .+..+ ..++++.+++.+.......||+++++++..++|+
T Consensus 345 ~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 345 GGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp CCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred CCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence 9998887664 45554 4444445555555555567999999887765554
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=195.46 Aligned_cols=235 Identities=17% Similarity=0.215 Sum_probs=166.3
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-CccccchhhhHHHhhC-CcEEEEecCCCC
Q 004816 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSR-GWAFVDVNYGGS 532 (729)
Q Consensus 455 ~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~la~~-G~~v~~~d~rGs 532 (729)
....+.++++.. +| .+.++++.|.+ ..+.|+||++||+++. .....+...+..|+.+ ||.|+.+||||.
T Consensus 45 ~~~~~~~~i~~~-~g-~i~~~~~~p~~-------~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~ 115 (311)
T 2c7b_A 45 IAETRDVHIPVS-GG-SIRARVYFPKK-------AAGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLA 115 (311)
T ss_dssp CSEEEEEEEEET-TE-EEEEEEEESSS-------CSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCT
T ss_pred cceEEEEEecCC-CC-cEEEEEEecCC-------CCCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCC
Confidence 345678888886 55 89999999865 3346899999998632 2234566677888876 999999999987
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC---CCCCCcEEEEEcChHHHHHHHHHh-CCC----cceEEEEeccc
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA-FRD----TFKAGASLYGV 604 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~-~~~----~~~a~v~~~~~ 604 (729)
+++... ...+|+.++++|+.+.. .+|+++++|+|||+||++++.++. +++ +++++|+.+|.
T Consensus 116 g~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~ 184 (311)
T 2c7b_A 116 PEYKFP-----------TAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPV 184 (311)
T ss_dssp TTSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCC
T ss_pred CCCCCC-----------ccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCc
Confidence 764321 23688999999998762 457789999999999999999886 544 59999999998
Q ss_pred cCh----hHHhhhcch-----h----hhhhhhhhcCCh--hhhhhcCcccc-cCCCCCCEEEEEeCCCCCCChHHHHHHH
Q 004816 605 ADL----SMLRAETHK-----F----ESRYIDNLVGSE--KDYYEKSPINF-VDKFSCPIILFQGLEDKVVPPDQARKIY 668 (729)
Q Consensus 605 ~d~----~~~~~~~~~-----~----~~~~~~~~~~~~--~~~~~~sp~~~-~~~i~~PvL~i~G~~D~~vp~~~~~~~~ 668 (729)
.++ ......... + ...+.....+.. ......+|+.. +..+ +|+|+++|++|.+++ ++..++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~lii~G~~D~~~~--~~~~~~ 261 (311)
T 2c7b_A 185 VNMTGVPTASLVEFGVAETTSLPIELMVWFGRQYLKRPEEAYDFKASPLLADLGGL-PPALVVTAEYDPLRD--EGELYA 261 (311)
T ss_dssp CCCSSCCCHHHHHHHHCTTCSSCHHHHHHHHHHHCSSTTGGGSTTTCGGGSCCTTC-CCEEEEEETTCTTHH--HHHHHH
T ss_pred cCCccccccCCccHHHhccCCCCHHHHHHHHHHhCCCCccccCcccCcccccccCC-CcceEEEcCCCCchH--HHHHHH
Confidence 873 111100000 0 001111111111 11112344432 2333 499999999999874 677888
Q ss_pred HHHHhCCCCEEEEEECCCCcccCC----cccHHHHHHHHHHHHHHHhC
Q 004816 669 KALKENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 669 ~~l~~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 712 (729)
+.++..|.+++++++++++|++.. .+...++.+.+.+||+++++
T Consensus 262 ~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 262 YKMKASGSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp HHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998752 34557889999999999886
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-20 Score=201.03 Aligned_cols=235 Identities=17% Similarity=0.197 Sum_probs=168.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-hhhHHHhhCCcEEEEecCCCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGY 535 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~~~la~~G~~v~~~d~rGs~g~ 535 (729)
..+.+.++. +|..+.++++.+. .++.|+||++||..... ..+. .....+.++||.|+++|+||.|..
T Consensus 134 ~~~~~~i~~--~~~~l~~~~~~~~--------~~~~p~vv~~HG~~~~~--~~~~~~~~~~~~~~g~~vi~~D~~G~G~s 201 (405)
T 3fnb_A 134 PLKSIEVPF--EGELLPGYAIISE--------DKAQDTLIVVGGGDTSR--EDLFYMLGYSGWEHDYNVLMVDLPGQGKN 201 (405)
T ss_dssp CCEEEEEEE--TTEEEEEEEECCS--------SSCCCEEEEECCSSCCH--HHHHHHTHHHHHHTTCEEEEECCTTSTTG
T ss_pred CcEEEEEeE--CCeEEEEEEEcCC--------CCCCCEEEEECCCCCCH--HHHHHHHHHHHHhCCcEEEEEcCCCCcCC
Confidence 457788887 6889999988542 34459999999974332 2222 233466789999999999987654
Q ss_pred chhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc
Q 004816 536 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 614 (729)
Q Consensus 536 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~ 614 (729)
... .........+|+.+++++|.... ++|+|+|||+||++++.++. +| +++++|+.+|+.++.......
T Consensus 202 ~~~-----~~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~ 271 (405)
T 3fnb_A 202 PNQ-----GLHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRIS 271 (405)
T ss_dssp GGG-----TCCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHH
T ss_pred CCC-----CCCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHh
Confidence 211 11222234789999999987764 78999999999999999998 66 999999999999876543211
Q ss_pred chhh--------------------------hhhhhhhcC-Ch----hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHH
Q 004816 615 HKFE--------------------------SRYIDNLVG-SE----KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQ 663 (729)
Q Consensus 615 ~~~~--------------------------~~~~~~~~~-~~----~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~ 663 (729)
.... ..+...... .. ..+....+...+.++++|+|+++|++|.++|+++
T Consensus 272 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~ 351 (405)
T 3fnb_A 272 FSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQ 351 (405)
T ss_dssp CC------------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETTSCHHHHHH
T ss_pred hhhhhhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCCCcCCChHH
Confidence 0000 000000000 10 1222334444478899999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEECCCCcc--cCCcccHHHHHHHHHHHHHHHhCC
Q 004816 664 ARKIYKALKENGLPVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 664 ~~~~~~~l~~~g~~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l~~ 713 (729)
+.++++.++..+.++++++++++.|+ ....++.....+.+.+||+++++.
T Consensus 352 ~~~l~~~l~~~~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 352 SQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFKK 403 (405)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhccCCCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999766554 234577888999999999999974
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=202.97 Aligned_cols=237 Identities=16% Similarity=0.124 Sum_probs=158.2
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc---cchhhhHHHh-hCCcEEEEecCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYWT-SRGWAFVDVNYGGS 532 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~---~~~~~~~~la-~~G~~v~~~d~rGs 532 (729)
..+.+.+.. +..+.+.+|.|++.. .+.++.|+||++|||++..... .|...+..|+ ++||.|+.+||||.
T Consensus 54 ~~~~v~~~~---~~~~~~~~~~P~~~~---~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~ 127 (338)
T 2o7r_A 54 LTKDLALNP---LHNTFVRLFLPRHAL---YNSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLA 127 (338)
T ss_dssp EEEEEEEET---TTTEEEEEEEEGGGG---GSSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred EEEEEEecC---CCCeEEEEEeCCCCC---cCCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCC
Confidence 345566654 344666677776520 0245779999999986543322 2566778887 78999999999987
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC------CCCCCcEEEEEcChHHHHHHHHHh-CCC--------cceE
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG------KADEKRLCITGGSAGGYTTLAALA-FRD--------TFKA 597 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~------~~d~~ri~i~G~S~GG~~a~~~~~-~~~--------~~~a 597 (729)
+++.. ...++|+.++++|+.++. .+|.+|++|+|||+||++++.++. +++ ++++
T Consensus 128 ~~~~~-----------~~~~~d~~~~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~ 196 (338)
T 2o7r_A 128 PEHRL-----------PAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKG 196 (338)
T ss_dssp TTTCT-----------THHHHHHHHHHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEE
T ss_pred CCCCC-----------chHHHHHHHHHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeE
Confidence 65321 134789999999998862 256689999999999999999987 777 8999
Q ss_pred EEEeccccChhHHhhhc-----c-----hhhhhhhhhhc--CChhhhhhcCcc---------cccCCCCCCEEEEEeCCC
Q 004816 598 GASLYGVADLSMLRAET-----H-----KFESRYIDNLV--GSEKDYYEKSPI---------NFVDKFSCPIILFQGLED 656 (729)
Q Consensus 598 ~v~~~~~~d~~~~~~~~-----~-----~~~~~~~~~~~--~~~~~~~~~sp~---------~~~~~i~~PvL~i~G~~D 656 (729)
+|+.+|+.+........ . .....+..... +........+|+ ..+..+.+|+|+++|++|
T Consensus 197 ~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D 276 (338)
T 2o7r_A 197 LVLDEPGFGGSKRTGSELRLANDSRLPTFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGD 276 (338)
T ss_dssp EEEESCCCCCSSCCHHHHHTTTCSSSCHHHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHHHHHTCEEEEEEETTS
T ss_pred EEEECCccCCCcCChhhhccCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhhcCCCCCEEEEECCCC
Confidence 99999987643211100 0 00000011000 000000111222 122335569999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC--CcccHHHHHHHHHHHHHHHhC
Q 004816 657 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR--KAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 657 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~--~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.+++ ++.+++++|++.+.+++++++++++|.+. .++...+.++.+.+|+.++++
T Consensus 277 ~~~~--~~~~~~~~l~~~~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~ 332 (338)
T 2o7r_A 277 PMID--RQMELAERLEKKGVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSCT 332 (338)
T ss_dssp TTHH--HHHHHHHHHHHTTCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC----
T ss_pred cchH--HHHHHHHHHHHCCCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhcc
Confidence 9876 56889999999999999999999999874 334557889999999998875
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-20 Score=214.57 Aligned_cols=312 Identities=8% Similarity=0.022 Sum_probs=208.3
Q ss_pred CceEEcC-CCcEEEEeecCC---CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 92 GGTAVDG-HGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~---~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
.++.||| |+.++|...... ......+|.++..+ |+.+.|+..+... ....|+++++.|+|.. +++|
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~-~~~~~l~~~~~~~-------~~~~~SPdG~~la~~~--~~~i 134 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQLITEERIPNNT-------QWVTWSPVGHKLAYVW--NNDI 134 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECCSSCCCTTE-------EEEEECSSTTCEEEEE--TTEE
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC-CcEEEcccCCCcc-------eeeEECCCCCEEEEEE--CCeE
Confidence 3589999 898888764211 11224566666663 3555565432111 1345777888999995 4679
Q ss_pred EEEeCCCCCCCCeecCCCCCCCc---------------eeeecceecCCCCEEEEEEeccCCC-----------------
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPL---------------VSYADGIFDPRFNRYVTVREDRRQD----------------- 215 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~---------------~~~~~~~~SPdG~~l~~~~~~~~~~----------------- 215 (729)
|++++.+ ++.++||....... .+...+.|||||++|+|.+.+...-
T Consensus 135 ~~~~~~~--~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~ 212 (740)
T 4a5s_A 135 YVKIEPN--LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPK 212 (740)
T ss_dssp EEESSTT--SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCE
T ss_pred EEEECCC--CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCc
Confidence 9999998 88899986521100 0112478999999999987554311
Q ss_pred ----------CCCcceEEEEEEcCC---C---ceEEeee------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEE
Q 004816 216 ----------ALNSTTEIVAIALNG---Q---NIQVLVS------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 273 (729)
Q Consensus 216 ----------~~~~~~~l~~~dl~~---g---~~~~lt~------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~ 273 (729)
.......|+++|+++ + +.++|.. .......++|||||+.+++...... +..+|+
T Consensus 213 ~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~----~~~~i~ 288 (740)
T 4a5s_A 213 TVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ----NYSVMD 288 (740)
T ss_dssp EEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST----TEEEEE
T ss_pred ceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC----CEEEEE
Confidence 011234799999999 8 6677764 3345678999999998877764332 346799
Q ss_pred EEEecCCCC----eee-eEEe-cCCCCCcccc--ccCceeCCCCc-EE-EEEecCCCceEEEEEEcCCCeEEEeeccCcc
Q 004816 274 VGYISENGD----VYK-RVCV-AGFDPTIVES--PTEPKWSSKGE-LF-FVTDRKNGFWNLHKWIESNNEVLAIYSLDAE 343 (729)
Q Consensus 274 ~~d~~~~g~----~~~-~~~~-~~~~~~~~~~--~~~~~wspDG~-l~-~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~ 343 (729)
++|++ +|+ ... ..++ ...+ .|... ...|.|||||+ ++ +.+.+ .|..+||++|+++++.++|+....+
T Consensus 289 ~~d~~-tg~~~~~~~~~~~l~~~~~~-~~v~~~~~~~p~fspDG~~l~~~~s~~-~G~~~l~~~~~~~~~~~~lT~g~~~ 365 (740)
T 4a5s_A 289 ICDYD-ESSGRWNCLVARQHIEMSTT-GWVGRFRPSEPHFTLDGNSFYKIISNE-EGYRHICYFQIDKKDCTFITKGTWE 365 (740)
T ss_dssp EEEEE-TTTTEEEECGGGCEEEECSS-SCSSSSSCCCCEECTTSSEEEEEEECT-TSCEEEEEEETTCSSCEESCCSSSC
T ss_pred EEECC-CCccccceeEEEEeeeccCC-ceEccCcCCCceEcCCCCEEEEEEEcC-CCceEEEEEECCCCceEecccCCEE
Confidence 99998 676 211 1222 2222 23221 34799999999 77 66666 7899999999999999999966544
Q ss_pred ccCCcccccCcceeeeeecCCCCEEEEEEEE----CCeEEEEEEECCCCceE-eeccCC----cceEEe--eeeCCEEEE
Q 004816 344 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQ----NGRSYLGILDDFGHSLS-LLDIPF----TDIDNI--TLGNDCLFV 412 (729)
Q Consensus 344 ~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~----~g~~~ly~~d~~~g~~~-~lt~~~----~~v~~~--~~~~~~~~~ 412 (729)
+..+.+ . +++.|||++.+ .+..+||+++++++..+ +|+... ..+... +++++.+++
T Consensus 366 v~~~~~-~------------d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~ 432 (740)
T 4a5s_A 366 VIGIEA-L------------TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL 432 (740)
T ss_dssp EEEEEE-E------------CSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred EEEEEE-E------------eCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEE
Confidence 432221 1 67889999977 57789999999987765 777431 233333 566777777
Q ss_pred EEeCCCCCceEEEEEcCCCcceee
Q 004816 413 EGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 413 ~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
..++++ ++.+++++.++++..++
T Consensus 433 ~~s~~~-~p~~~l~~~~~~~~~~~ 455 (740)
T 4a5s_A 433 RCSGPG-LPLYTLHSSVNDKGLRV 455 (740)
T ss_dssp EECSBS-SCEEEEEETTTTEEEEE
T ss_pred EeCCCC-CCEEEEEECCCCcEEEE
Confidence 777766 88899999887765444
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=192.48 Aligned_cols=203 Identities=17% Similarity=0.130 Sum_probs=148.5
Q ss_pred CCCCCEEEEEcCCCCCC---ccccchhhhHHH----hhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSE---ARGILNLSIQYW----TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF 561 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~---~~~~~~~~~~~l----a~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~ 561 (729)
.++.|+||++||+++.. ....|...++.| ++.||.|+++|||+++.... ...++|+.+++++
T Consensus 38 ~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~~~-----------~~~~~d~~~~~~~ 106 (273)
T 1vkh_A 38 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEITN-----------PRNLYDAVSNITR 106 (273)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSCT-----------THHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCCCC-----------CcHHHHHHHHHHH
Confidence 35679999999986542 344567777877 67899999999997654221 1237899999999
Q ss_pred HHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-----------------CCcceEEEEeccccChhHHhhhcchhhhhhhh
Q 004816 562 LVGSGKADEKRLCITGGSAGGYTTLAALA-F-----------------RDTFKAGASLYGVADLSMLRAETHKFESRYID 623 (729)
Q Consensus 562 l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-----------------~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 623 (729)
+.++ ++.++++|+|||+||++++.++. + +++++++|+.+|+.++.........+. .+..
T Consensus 107 l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~-~~~~ 183 (273)
T 1vkh_A 107 LVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYD-CFTR 183 (273)
T ss_dssp HHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGH-HHHH
T ss_pred HHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccHH-HHHH
Confidence 9887 46789999999999999999998 4 889999999999988765543322211 1111
Q ss_pred hhc-CChhhh----hhcCccc--ccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccH
Q 004816 624 NLV-GSEKDY----YEKSPIN--FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENI 696 (729)
Q Consensus 624 ~~~-~~~~~~----~~~sp~~--~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~ 696 (729)
..+ .....+ ...++.. ....+++|+|+++|++|.++|++++.++++.++..|.+++++++++++|.+....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~~~~~-- 261 (273)
T 1vkh_A 184 LAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVYKN-- 261 (273)
T ss_dssp HHCTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGGGGGGC--
T ss_pred HHhcccccchhhcccccChhhhhcccccCCCEEEEecCCcCCCChHHHHHHHHHHHhcCCceEEEEeCCCcccccccC--
Confidence 111 111111 1122211 1223679999999999999999999999999999999999999999999865433
Q ss_pred HHHHHHHHHHH
Q 004816 697 KFTLEQQMVFF 707 (729)
Q Consensus 697 ~~~~~~~~~fl 707 (729)
.+..+.+.+||
T Consensus 262 ~~~~~~i~~fl 272 (273)
T 1vkh_A 262 GKVAKYIFDNI 272 (273)
T ss_dssp HHHHHHHHHTC
T ss_pred hHHHHHHHHHc
Confidence 66777777765
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=197.79 Aligned_cols=241 Identities=14% Similarity=0.176 Sum_probs=163.2
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc-chhhhHHHhhCCcEEEEecC--CCCC-
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNY--GGST- 533 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~-~~~~~~~la~~G~~v~~~d~--rGs~- 533 (729)
.+.+++.+...|..+.+.++.|++.. .+++|+||++||+++....+. .....+.++++||.|+.+|. ||.+
T Consensus 22 ~~~~~~~s~~~~~~~~~~v~~P~~~~-----~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~ 96 (283)
T 4b6g_A 22 QQVWAHHAQTLQCEMKFAVYLPNNPE-----NRPLGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQV 96 (283)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCTT-----CCCEEEEEEECCTTCCSHHHHHHSCTHHHHHHHTCEEEEECSSCCSTTS
T ss_pred EEEEEEechhhCCceEEEEEeCCCCC-----CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEEeccccccccc
Confidence 35566666557889999999998732 467899999999865543221 12345667788999999995 4433
Q ss_pred --------CCchhHH-HhhccCCC-cccHHHH--HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEE
Q 004816 534 --------GYGREFR-ERLLGRWG-IVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS 600 (729)
Q Consensus 534 --------g~g~~~~-~~~~~~~~-~~~~~D~--~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~ 600 (729)
|.|..+. ......+. .....+. ..++.++.+... +.+|++|+|||+||++|+.++. +|++|+++++
T Consensus 97 ~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 175 (283)
T 4b6g_A 97 PNDDAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRLIEKHFP-TNGKRSIMGHSMGGHGALVLALRNQERYQSVSA 175 (283)
T ss_dssp CCCSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHSC-EEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEE
T ss_pred cccccccccCCCcccccCccCcccchhhHHHHHHHHHHHHHHHhCC-CCCCeEEEEEChhHHHHHHHHHhCCccceeEEE
Confidence 2222211 11111111 0111221 233444444322 4689999999999999999988 8999999999
Q ss_pred eccccChhHHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCCCC--CCEEEEEeCCCCCCCh-HHHHHHHHHHHhCCC
Q 004816 601 LYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS--CPIILFQGLEDKVVPP-DQARKIYKALKENGL 676 (729)
Q Consensus 601 ~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~--~PvL~i~G~~D~~vp~-~~~~~~~~~l~~~g~ 676 (729)
.+|+.+...... ....+...++ ....+...+|...+++++ +|+|++||+.|.+++. .++.+++++|+++|+
T Consensus 176 ~s~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~g~ 250 (283)
T 4b6g_A 176 FSPILSPSLVPW-----GEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAANQ 250 (283)
T ss_dssp ESCCCCGGGSHH-----HHHHHHHHHCSCGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHHTC
T ss_pred ECCccccccCcc-----hhhhHHhhcCCchHHHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHHHHcCC
Confidence 999887643211 1111222222 345566677766665554 5999999999999876 238999999999999
Q ss_pred CEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 677 PVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 677 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+++++++|+++|.|. .+...+...++|+.++|+
T Consensus 251 ~~~~~~~~g~~H~~~---~~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 251 PVDVRFHKGYDHSYY---FIASFIGEHIAYHAAFLK 283 (283)
T ss_dssp CCEEEEETTCCSSHH---HHHHHHHHHHHHHHTTCC
T ss_pred CceEEEeCCCCcCHh---HHHHHHHHHHHHHHHhcC
Confidence 999999999999863 456778888999988764
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=197.73 Aligned_cols=236 Identities=14% Similarity=0.076 Sum_probs=165.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc-cc--cchhhhHHHhhCCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RG--ILNLSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~-~~--~~~~~~~~la~~G~~v~~~d~rGs~ 533 (729)
..+.+.+... +|..+.+.+|.|.+ ..++.|+||++||+++... .. .+......|+++||.|+.+||||.+
T Consensus 81 ~~~~~~~~~~-~g~~l~~~v~~p~~------~~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~g 153 (361)
T 1jkm_A 81 ETSTETILGV-DGNEITLHVFRPAG------VEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAW 153 (361)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEETT------CCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSE
T ss_pred eeeeeeeecC-CCCeEEEEEEeCCC------CCCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCC
Confidence 3456677776 78789999999976 1236799999999863322 22 4566788888899999999999986
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCC---CCCCCcEEEEEcChHHHHHHHHHh------CCCcceEEEEeccc
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA------FRDTFKAGASLYGV 604 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~------~~~~~~a~v~~~~~ 604 (729)
|+... ..+.....|+.++++|+.++. .+| +|+|+|||+||.+++.++. +|++++++|+.+|+
T Consensus 154 g~~~~-------~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~ 224 (361)
T 1jkm_A 154 TAEGH-------HPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPY 224 (361)
T ss_dssp ETTEE-------CCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCC
T ss_pred CCCCC-------CCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCc
Confidence 54211 112234789999999998862 333 9999999999999988875 46689999999998
Q ss_pred cCh---------hHHhhhcchh---------hhhhhhhhcCC--hhhhhhcCcc----cccCCCCCCEEEEEeCCCCCCC
Q 004816 605 ADL---------SMLRAETHKF---------ESRYIDNLVGS--EKDYYEKSPI----NFVDKFSCPIILFQGLEDKVVP 660 (729)
Q Consensus 605 ~d~---------~~~~~~~~~~---------~~~~~~~~~~~--~~~~~~~sp~----~~~~~i~~PvL~i~G~~D~~vp 660 (729)
.+. .......... ...+....... .......+|+ ..+.++. |+|+++|++|.+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~l~-P~Lii~G~~D~~~~ 303 (361)
T 1jkm_A 225 ISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLP-PFVVAVNELDPLRD 303 (361)
T ss_dssp CCCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCC-CEEEEEETTCTTHH
T ss_pred cccccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhhHcCCC-ceEEEEcCcCcchh
Confidence 876 2111000000 00011111110 0011122343 2345665 99999999999886
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEECCCCcccC-C----cccH-HHHHHHHHHHHHHHh
Q 004816 661 PDQARKIYKALKENGLPVALVEYEGEQHGFR-K----AENI-KFTLEQQMVFFARVV 711 (729)
Q Consensus 661 ~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~-~----~~~~-~~~~~~~~~fl~~~l 711 (729)
++.++++.|+++|.+++++++++++|.+. . .+.. .++.+.+.+||+++.
T Consensus 304 --~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 304 --EGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp --HHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999876 2 1333 778899999998874
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=195.32 Aligned_cols=211 Identities=15% Similarity=0.185 Sum_probs=150.0
Q ss_pred CCCCEEEEEcCCCCCC-ccccchhhhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 490 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~-~~~~~~~~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
...|+||++|||++.. ....+...+..|+.+ ||.|+++|||++++... ...++|+.++++|+.++ .
T Consensus 78 ~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~~-----------~~~~~d~~~a~~~l~~~-~ 145 (322)
T 3k6k_A 78 AGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENPF-----------PAAVDDCVAAYRALLKT-A 145 (322)
T ss_dssp CCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSCT-----------THHHHHHHHHHHHHHHH-H
T ss_pred CCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCCC-----------chHHHHHHHHHHHHHHc-C
Confidence 3445599999986432 223455666777765 99999999998765331 13479999999999988 5
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCc----ceEEEEeccccChhHHhhhcch-------h----hhhhhhhhcC-Chh
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FRDT----FKAGASLYGVADLSMLRAETHK-------F----ESRYIDNLVG-SEK 630 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~~~----~~a~v~~~~~~d~~~~~~~~~~-------~----~~~~~~~~~~-~~~ 630 (729)
+|+++|+|+|+|+||++|+.++. ++++ ++++|+++|+.++......... . ...+.....+ ...
T Consensus 146 ~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (322)
T 3k6k_A 146 GSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSRWSNSNLADRDFLAEPDTLGEMSELYVGGEDR 225 (322)
T ss_dssp SSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCSHHHHHTGGGCSSSCHHHHHHHHHHHHTTSCT
T ss_pred CCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccCccchhhccCCCCcCCHHHHHHHHHHhcCCCCC
Confidence 68899999999999999998886 5444 9999999999876422111000 0 0001111111 111
Q ss_pred hhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC----cccHHHHHHHHHHH
Q 004816 631 DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVF 706 (729)
Q Consensus 631 ~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~f 706 (729)
.....+|+.......+|+|++||++|.+ ..++.+++++|+.+|+++++++||+++|.|.. .+...+.++.+.+|
T Consensus 226 ~~~~~sp~~~~~~~~pP~li~~G~~D~~--~~~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~f 303 (322)
T 3k6k_A 226 KNPLISPVYADLSGLPEMLIHVGSEEAL--LSDSTTLAERAGAAGVSVELKIWPDMPHVFQMYGKFVNAADISIKEICHW 303 (322)
T ss_dssp TCTTTCGGGSCCTTCCCEEEEEESSCTT--HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHH
T ss_pred CCCcCCcccccccCCCcEEEEECCcCcc--HHHHHHHHHHHHHCCCCEEEEEECCCccccccccccChHHHHHHHHHHHH
Confidence 1122355554444457999999999987 57899999999999999999999999999753 24467889999999
Q ss_pred HHHHhCCC
Q 004816 707 FARVVGHF 714 (729)
Q Consensus 707 l~~~l~~~ 714 (729)
|+++++..
T Consensus 304 l~~~l~~~ 311 (322)
T 3k6k_A 304 ISARISKL 311 (322)
T ss_dssp HHTTCC--
T ss_pred HHHHHhcc
Confidence 99999744
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=199.86 Aligned_cols=238 Identities=17% Similarity=0.177 Sum_probs=166.1
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-hhhHHHhhCCcEEEEecCCCCCC
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTG 534 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~~~la~~G~~v~~~d~rGs~g 534 (729)
...+.+.+.+. +|..+.++++.|.+. +.++.|+||++||+++.. ..+. ..++.|+++||.|+.+|+||.+.
T Consensus 66 ~~~~~~~~~~~-~g~~~~~~~~~p~~~-----~~~~~p~vv~~hG~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~ 137 (367)
T 2hdw_A 66 VEHRKVTFANR-YGITLAADLYLPKNR-----GGDRLPAIVIGGPFGAVK--EQSSGLYAQTMAERGFVTLAFDPSYTGE 137 (367)
T ss_dssp EEEEEEEEECT-TSCEEEEEEEEESSC-----CSSCEEEEEEECCTTCCT--TSHHHHHHHHHHHTTCEEEEECCTTSTT
T ss_pred ceeEEEEEecC-CCCEEEEEEEeCCCC-----CCCCCCEEEEECCCCCcc--hhhHHHHHHHHHHCCCEEEEECCCCcCC
Confidence 35678888887 899999999998651 145679999999985432 3333 36788999999999999998765
Q ss_pred CchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh
Q 004816 535 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE 613 (729)
Q Consensus 535 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~ 613 (729)
...... .........+|+.++++++.++..+|.++++++|||+||.+++.++. +| +++++|+.+|. +.......
T Consensus 138 s~~~~~---~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~-~~~~~~~~ 212 (367)
T 2hdw_A 138 SGGQPR---NVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMY-DMTRVMSK 212 (367)
T ss_dssp SCCSSS---SCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCC-CHHHHHHH
T ss_pred CCCcCc---cccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEeccc-cccHHHhh
Confidence 432211 00111235799999999999988788899999999999999999998 76 69999999876 32211100
Q ss_pred -c-----------------------------------c-------hhhhh---hhhhhc---------------CChhhh
Q 004816 614 -T-----------------------------------H-------KFESR---YIDNLV---------------GSEKDY 632 (729)
Q Consensus 614 -~-----------------------------------~-------~~~~~---~~~~~~---------------~~~~~~ 632 (729)
. . ..... +..... .....+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (367)
T 2hdw_A 213 GYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSF 292 (367)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHh
Confidence 0 0 00000 000000 011233
Q ss_pred hhcCcccccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 633 YEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 633 ~~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
...++...+.+++ +|+|+++|++|. +++++.++++. .+.+++++++|+++|.+..........+.+.+||+++|
T Consensus 293 ~~~~~~~~~~~i~~~PvLii~G~~D~--~~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~~~~i~~fl~~~l 367 (367)
T 2hdw_A 293 MNMPILTYIKEISPRPILLIHGERAH--SRYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIPFDRIAGFFDEHL 367 (367)
T ss_dssp TTSCSCTTGGGGTTSCEEEEEETTCT--THHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSCHHHHHHHHHHHC
T ss_pred cCCChhHhHHhhcCCceEEEecCCCC--CHHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHHHHHHHHHHHhhC
Confidence 3456777788899 999999999998 78888877776 56789999999999974221111126788899999875
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=185.87 Aligned_cols=186 Identities=13% Similarity=0.073 Sum_probs=131.7
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHH----HHHHHHHh
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCC----SCATFLVG 564 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~----~~~~~l~~ 564 (729)
.+..++||++||.+. ....+..+++.|...|+.|++||.+|.+.|+..+......+. ...++.. .+++.+.+
T Consensus 19 ~~a~~~Vv~lHG~G~--~~~~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~ 94 (210)
T 4h0c_A 19 QRAKKAVVMLHGRGG--TAADIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQNQ--PALDSALALVGEVVAEIEA 94 (210)
T ss_dssp TTCSEEEEEECCTTC--CHHHHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGGGT--THHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCC--CHHHHHHHHHHhCCCCeEEEeecCCCCCccccccCCCcccch--HHHHHHHHHHHHHHHHHHH
Confidence 345689999999633 234455677788888999999999876655443322221111 1233333 33344433
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCC
Q 004816 565 SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDK 643 (729)
Q Consensus 565 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 643 (729)
..+|++||+++|+|+||++++.++. +|++|+++|++++........ ... .....
T Consensus 95 -~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~~-----------------~~~-------~~~~~ 149 (210)
T 4h0c_A 95 -QGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQELA-----------------IGN-------YKGDF 149 (210)
T ss_dssp -TTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSCC-----------------GGG-------CCBCC
T ss_pred -hCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhhh-----------------hhh-------hhhhc
Confidence 3579999999999999999999987 999999999998853211000 000 00112
Q ss_pred CCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 644 FSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 644 i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.++|+|++||++|++||+++++++++.|+++|.++++++||+.||.+.. +.++.+.+||.
T Consensus 150 ~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~~-----~el~~i~~wL~ 209 (210)
T 4h0c_A 150 KQTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYPGRPHTISG-----DEIQLVNNTIL 209 (210)
T ss_dssp TTCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEETCCSSCCH-----HHHHHHHHTTT
T ss_pred cCCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCcCH-----HHHHHHHHHHc
Confidence 3579999999999999999999999999999999999999999998753 33556666664
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=193.16 Aligned_cols=234 Identities=16% Similarity=0.170 Sum_probs=165.3
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH
Q 004816 462 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541 (729)
Q Consensus 462 ~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~ 541 (729)
.+... +|..+.++++.|.+ .+.|+||++||.+.. ...|...+..|+++||.|+++|+||.|......
T Consensus 39 ~~~~~-dg~~l~~~~~~p~~--------~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-- 105 (342)
T 3hju_A 39 HLVNA-DGQYLFCRYWKPTG--------TPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVGHGQSEGER-- 105 (342)
T ss_dssp EEECT-TSCEEEEEEECCSS--------CCSEEEEEECCTTCC--GGGGHHHHHHHHTTTEEEEEECCTTSTTSCSST--
T ss_pred eEEcc-CCeEEEEEEeCCCC--------CCCcEEEEECCCCcc--cchHHHHHHHHHhCCCeEEEEcCCCCcCCCCcC--
Confidence 56666 89999999998854 346899999998544 346777889999999999999999876544221
Q ss_pred hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc-chhhh
Q 004816 542 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HKFES 619 (729)
Q Consensus 542 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~-~~~~~ 619 (729)
.........++|+.++++++..+ .+.++++|+|||+||++++.++. +|++++++|+.+|..+........ .....
T Consensus 106 -~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 182 (342)
T 3hju_A 106 -MVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAA 182 (342)
T ss_dssp -TCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSHHHHHHH
T ss_pred -CCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhHHHHHHH
Confidence 01111112378999999999887 45679999999999999999998 999999999999976542111000 00000
Q ss_pred hhhhhh-------------cC-Chh---hhh---------------------hcCcccccCCCCCCEEEEEeCCCCCCCh
Q 004816 620 RYIDNL-------------VG-SEK---DYY---------------------EKSPINFVDKFSCPIILFQGLEDKVVPP 661 (729)
Q Consensus 620 ~~~~~~-------------~~-~~~---~~~---------------------~~sp~~~~~~i~~PvL~i~G~~D~~vp~ 661 (729)
.+.... .. ... .+. ..+....+.++++|+|+++|++|.++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~ 262 (342)
T 3hju_A 183 KVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDS 262 (342)
T ss_dssp HHHHHHCTTCBCCCCCGGGSCSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSSCH
T ss_pred HHHHHhccccccCcccccccccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcCEEEEEeCCCcccCh
Confidence 000000 00 000 000 0011234678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEECCCCcccCC--cccHHHHHHHHHHHHHHHhCC
Q 004816 662 DQARKIYKALKENGLPVALVEYEGEQHGFRK--AENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 662 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~l~~ 713 (729)
+.+.++++.+.. ..+++++++++||.+.. ++...+.++.+++||.+++..
T Consensus 263 ~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (342)
T 3hju_A 263 KGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 314 (342)
T ss_dssp HHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC--CCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhcccCC
Confidence 999999888753 25799999999998643 344667888999999999863
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-20 Score=186.13 Aligned_cols=229 Identities=16% Similarity=0.182 Sum_probs=156.0
Q ss_pred EEEEe-eccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 459 ELIEF-PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 459 ~~~~~-~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
+.+++ ... +|.++.+..+.+.+ ...|+||++||++.....+.+......++++||.|+++|+||.|....
T Consensus 12 ~~~~~~~~~-~g~~l~~~~~~~~~--------~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~ 82 (270)
T 3llc_A 12 HAITVGQGS-DARSIAALVRAPAQ--------DERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASGG 82 (270)
T ss_dssp EEEEESSGG-GCEEEEEEEECCSS--------TTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTSTTCCS
T ss_pred ceEEEeecc-CcceEEEEeccCCC--------CCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCCCCCC
Confidence 44555 455 89999987776643 236899999998655444445557788888999999999998776543
Q ss_pred hHHHhhccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh----CC---CcceEEEEeccccChhH
Q 004816 538 EFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FR---DTFKAGASLYGVADLSM 609 (729)
Q Consensus 538 ~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~~---~~~~a~v~~~~~~d~~~ 609 (729)
.... ... ...+|+.++++++. .++++++|||+||.+++.++. +| ++++++|+.+|..++..
T Consensus 83 ~~~~-----~~~~~~~~d~~~~~~~l~------~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~ 151 (270)
T 3llc_A 83 AFRD-----GTISRWLEEALAVLDHFK------PEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTS 151 (270)
T ss_dssp CGGG-----CCHHHHHHHHHHHHHHHC------CSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHH
T ss_pred cccc-----ccHHHHHHHHHHHHHHhc------cCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchh
Confidence 3211 111 11556666666652 578999999999999988875 67 89999999999877654
Q ss_pred Hhhh--c-chhhhhhhhh--------hcCC--------hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHH
Q 004816 610 LRAE--T-HKFESRYIDN--------LVGS--------EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 670 (729)
Q Consensus 610 ~~~~--~-~~~~~~~~~~--------~~~~--------~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~ 670 (729)
.... . ......+... .... ...+........+.++++|+|+++|++|.++|++.+.++++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~~~~~~~~~~~ 231 (270)
T 3llc_A 152 DLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEH 231 (270)
T ss_dssp HTTGGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSCHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCCHHHHHHHHHh
Confidence 2110 0 0000000000 0000 012223334456778899999999999999999999998888
Q ss_pred HHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 671 LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 671 l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+.. .+++++++++++|.+...+......+.+.+||++
T Consensus 232 ~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 232 LPA--DDVVLTLVRDGDHRLSRPQDIDRMRNAIRAMIEP 268 (270)
T ss_dssp SCS--SSEEEEEETTCCSSCCSHHHHHHHHHHHHHHHC-
T ss_pred cCC--CCeeEEEeCCCcccccccccHHHHHHHHHHHhcC
Confidence 754 3589999999999877666667777777777754
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=188.06 Aligned_cols=199 Identities=16% Similarity=0.131 Sum_probs=153.0
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-CccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
+...++.. ++..+.+.+|.|.+ ++.|+||++||+++. .....|...++.|+++||.|+++|+||++.+..
T Consensus 39 ~~~~i~~~-~~~~~~~~~~~p~~--------~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~~ 109 (262)
T 2pbl_A 39 ARLNLSYG-EGDRHKFDLFLPEG--------TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRI 109 (262)
T ss_dssp EEEEEESS-SSTTCEEEEECCSS--------SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSCH
T ss_pred CccccccC-CCCCceEEEEccCC--------CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCCh
Confidence 44455544 56566667787753 356899999997532 344567778889999999999999998764321
Q ss_pred hHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C------CCcceEEEEeccccChhHH
Q 004816 538 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F------RDTFKAGASLYGVADLSML 610 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~------~~~~~a~v~~~~~~d~~~~ 610 (729)
. ...+|+.++++++..+.. ++++|+|||+||++++.++. + +++++++|+.+|+.++...
T Consensus 110 ~-----------~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~ 175 (262)
T 2pbl_A 110 S-----------EITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPL 175 (262)
T ss_dssp H-----------HHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGG
T ss_pred H-----------HHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHH
Confidence 1 227899999999988643 79999999999999999998 5 8999999999999886543
Q ss_pred hhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 611 RAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
.... +..........+...+|...+.++++|+|+++|++|..++++++.++++.++ ++++++++++|.+
T Consensus 176 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~H~~ 244 (262)
T 2pbl_A 176 LRTS------MNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHHFN 244 (262)
T ss_dssp GGST------THHHHCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCTTT
T ss_pred Hhhh------hhhhhCCCHHHHHhcCcccccCCCCCCEEEEEeCCCCcccHHHHHHHHHHhC-----CeEEEeCCCCcch
Confidence 2211 1111112345666778888888999999999999999999999999999986 6999999999976
Q ss_pred C
Q 004816 691 R 691 (729)
Q Consensus 691 ~ 691 (729)
.
T Consensus 245 ~ 245 (262)
T 2pbl_A 245 V 245 (262)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=215.97 Aligned_cols=311 Identities=10% Similarity=0.035 Sum_probs=201.8
Q ss_pred cCCHHHHhccC--CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC--ceEEEE
Q 004816 78 PLTADVVSGAS--KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIF 153 (729)
Q Consensus 78 ~lt~e~i~~~~--~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~ 153 (729)
++|+|+++... ....++.|+|++.+.+.. .++. |+.++.. +|+.+.++... .. ...+. ..|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~----~d~~--i~~~~~~-~g~~~~~~~~~-~~----~~~~~~~~~~SpD 70 (719)
T 1z68_A 3 ALTLKDILNGTFSYKTFFPNWISGQEYLHQS----ADNN--IVLYNIE-TGQSYTILSNR-TM----KSVNASNYGLSPD 70 (719)
T ss_dssp CCCHHHHHHTTTCCCCCCCEESSSSEEEEEC----TTSC--EEEEESS-SCCEEEEECHH-HH----HTTTCSEEEECTT
T ss_pred cccHHHHhcCcccCCCCccEECCCCeEEEEc----CCCC--EEEEEcC-CCcEEEEEccc-cc----cccceeeEEECCC
Confidence 58899998872 223488999933444433 2344 4444544 23556665421 00 00122 335555
Q ss_pred CCEEEEEECC--------CCcEEEEeCCCCCCCC---eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceE
Q 004816 154 GDTVIFSNYK--------DQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 154 ~~~i~~~~~~--------~~~l~~~d~~~~~~~~---~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~ 222 (729)
++.|+|.... ++.||++|+++ ++. ++|+.. ...++|||||++|+|+.+ .+
T Consensus 71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~~~~l~~~-------~~~~~~SPDG~~la~~~~----------~~ 131 (719)
T 1z68_A 71 RQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVRGNELPRP-------IQYLCWSPVGSKLAYVYQ----------NN 131 (719)
T ss_dssp SSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCCSS-------BCCEEECSSTTCEEEEET----------TE
T ss_pred CCeEEEEecCceeEEeecceEEEEEECCC--CccccceecCcc-------cccceECCCCCEEEEEEC----------Ce
Confidence 6688887652 36899999998 765 555422 477899999999999964 46
Q ss_pred EEEEEcCCCceEEeeeCCC-------------------eeeeeeeCCCCCeEEEEEecCCCCC-----------------
Q 004816 223 IVAIALNGQNIQVLVSGSD-------------------FYAFPRMDPRGERMAWIEWHHPNMP----------------- 266 (729)
Q Consensus 223 l~~~dl~~g~~~~lt~~~~-------------------~~~~~~~SPDG~~la~~~~~~~~~~----------------- 266 (729)
|+++++++++.++++.... ....++|||||++|||.+.+....+
T Consensus 132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 211 (719)
T 1z68_A 132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN 211 (719)
T ss_dssp EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence 9999999999888874321 1147999999999999986643211
Q ss_pred ---------CCCcEEEEEEecCCCCee-eeEE-----ecCCCCCccccccCceeCCCCcEEEEE-ecCCCceEEEEEE--
Q 004816 267 ---------WDKAELWVGYISENGDVY-KRVC-----VAGFDPTIVESPTEPKWSSKGELFFVT-DRKNGFWNLHKWI-- 328 (729)
Q Consensus 267 ---------~~~~~l~~~d~~~~g~~~-~~~~-----~~~~~~~~~~~~~~~~wspDG~l~~~~-~~~~g~~~l~~~d-- 328 (729)
....+|+++|++ +++.. ...+ +.+.. ..+..+.|||||++++.. ++..+...|+++|
T Consensus 212 ~~yp~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~ 286 (719)
T 1z68_A 212 IPYPKAGAKNPVVRIFIIDTT-YPAYVGPQEVPVPAMIASSD----YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFR 286 (719)
T ss_dssp EECCBTTSCCCEEEEEEEESS-CHHHHCCEECCCCHHHHTSC----EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEEC
T ss_pred ecCCCCCCCCCeeEEEEEECC-CCCccceeEccCCccCCCCc----ceEEEeEEeCCCeEEEEEeccccCeEEEEEEccc
Confidence 123479999998 55431 0111 11233 556789999998855553 3324557899999
Q ss_pred --cCCCeEEEeec----c-Ccccc-----CCcccccCcceeeeeecCCCCEEEE-EEEECCeEEEEEEECCCCceEeecc
Q 004816 329 --ESNNEVLAIYS----L-DAEFS-----RPLWVFGINSYEIIQSHGEKNLIAC-SYRQNGRSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 329 --~~~g~~~~l~~----~-~~~~~-----~~~w~~~~~~~~~l~~~~~~~~l~~-~s~~~g~~~ly~~d~~~g~~~~lt~ 395 (729)
+++++.+.++. . ...+. .+.|++ +++.+++ .+..+|..+||++++++++.++|+.
T Consensus 287 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp------------dg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~ 354 (719)
T 1z68_A 287 EDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY------------DAISYYKIFSDKDGYKHIHYIKDTVENAIQITS 354 (719)
T ss_dssp SSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT------------TSSCEEEEEECTTSCEEEEEESSCSTTCEECSC
T ss_pred CCCCCCceEEEEecccccCCceEccccCCccEECC------------CCCeEEEEEEccCCceEEEEEECCCCceEeccc
Confidence 88887776662 1 22222 455554 7777766 4667889999999999999999998
Q ss_pred CCcceEEe-eeeCCEEEEEEeCC----CCCceEEEEEcCCC--cceeee
Q 004816 396 PFTDIDNI-TLGNDCLFVEGASG----VEPSSVAKVTLDDH--KLKAVD 437 (729)
Q Consensus 396 ~~~~v~~~-~~~~~~~~~~~~~~----~~~~~ly~~d~~~~--~~~~lt 437 (729)
+.+.+..+ ..+++.+++.+ +. .....||.++++++ +.++|+
T Consensus 355 ~~~~v~~~~~~d~~~i~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~l~ 402 (719)
T 1z68_A 355 GKWEAINIFRVTQDSLFYSS-NEFEEYPGRRNIYRISIGSYPPSKKCVT 402 (719)
T ss_dssp SSSCEEEEEEECSSEEEEEE-SCGGGCTTCBEEEEEECSSSSCCEEESS
T ss_pred CceEEEEEEEEeCCEEEEEE-ecCCCCCceEEEEEEeCCCCCCCceecc
Confidence 77777655 33555555554 43 34456999998766 334443
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=193.30 Aligned_cols=191 Identities=16% Similarity=0.186 Sum_probs=152.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.. .+.++.|.. ..+.|+||++||.+.. ...|..+++.|+++||.|+.+|+||.+.....
T Consensus 80 ~g~~-~~~~~~p~~-------~~~~p~vv~~HG~~~~--~~~~~~~~~~la~~G~~vv~~d~~g~g~s~~~--------- 140 (306)
T 3vis_A 80 DGFG-GGTIYYPRE-------NNTYGAIAISPGYTGT--QSSIAWLGERIASHGFVVIAIDTNTTLDQPDS--------- 140 (306)
T ss_dssp SSSC-CEEEEEESS-------CSCEEEEEEECCTTCC--HHHHHHHHHHHHTTTEEEEEECCSSTTCCHHH---------
T ss_pred CCCc-ceEEEeeCC-------CCCCCEEEEeCCCcCC--HHHHHHHHHHHHhCCCEEEEecCCCCCCCcch---------
Confidence 4443 235566654 2367999999997543 34567788999999999999999986553321
Q ss_pred CcccHHHHHHHHHHHHhC------CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhh
Q 004816 548 GIVDVNDCCSCATFLVGS------GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESR 620 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~------~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 620 (729)
..+|+.++++++.+. ..+|.+|++++|||+||++++.++. +|+ ++++|+++|...
T Consensus 141 ---~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~-------------- 202 (306)
T 3vis_A 141 ---RARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL-------------- 202 (306)
T ss_dssp ---HHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS--------------
T ss_pred ---HHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC--------------
Confidence 247889999999987 6778899999999999999999998 776 999999988543
Q ss_pred hhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChH-HHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHH
Q 004816 621 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPD-QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFT 699 (729)
Q Consensus 621 ~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~-~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~ 699 (729)
...+.++++|+|+++|++|.++|++ ++..+++.++..+ +++++++++++|.+... ...+.
T Consensus 203 -----------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~~~~-~~~~~ 263 (306)
T 3vis_A 203 -----------------NKSWRDITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPT-DKAYLELDGASHFAPNI-TNKTI 263 (306)
T ss_dssp -----------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHTCCTTS-CEEEEEETTCCTTGGGS-CCHHH
T ss_pred -----------------ccccccCCCCEEEEecCCCcccCcchhHHHHHHHhccCC-CceEEEECCCCccchhh-chhHH
Confidence 1234567899999999999999998 6999999998766 89999999999987543 23678
Q ss_pred HHHHHHHHHHHhCCC
Q 004816 700 LEQQMVFFARVVGHF 714 (729)
Q Consensus 700 ~~~~~~fl~~~l~~~ 714 (729)
.+.+.+||+++++..
T Consensus 264 ~~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 264 GMYSVAWLKRFVDED 278 (306)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHccCc
Confidence 889999999999743
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-19 Score=191.30 Aligned_cols=258 Identities=12% Similarity=0.094 Sum_probs=186.7
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~~ 176 (729)
+++++|+.....+.....|+.++.+ ++..+.++..... .....|+++++.|++..... ..|+++|+.+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~-------v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-- 212 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQP-------LMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-- 212 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSC-------EEEEEECTTSSEEEEEECTTSSCEEEEEETTT--
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCc-------ceeeEEcCCCCEEEEEEecCCCcEEEEEECCC--
Confidence 7788888764332212456666555 2344555432101 11234555667888887654 4899999998
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
++.++++.. ......++|||||++|+|+..... ...||++|+++++.++++........++|||||++|+
T Consensus 213 g~~~~l~~~----~~~~~~~~~spdg~~la~~~~~~g------~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~ 282 (415)
T 2hqs_A 213 GAVRQVASF----PRHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282 (415)
T ss_dssp CCEEEEECC----SSCEEEEEECTTSSEEEEEECTTS------SCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEE
T ss_pred CcEEEeecC----CCcccCEEEcCCCCEEEEEEecCC------CceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEE
Confidence 777777765 245678999999999998876432 2579999999999988887767778899999999999
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
|.+.+. ...+||++|+. +++. . .+.... .....+.|||||+ |++.... .+...|+++|+++++.+
T Consensus 283 ~~s~~~-----g~~~i~~~d~~-~~~~--~-~l~~~~----~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 283 FTSDQA-----GRPQVYKVNIN-GGAP--Q-RITWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp EEECTT-----SSCEEEEEETT-SSCC--E-ECCCSS----SEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEE
T ss_pred EEECCC-----CCcEEEEEECC-CCCE--E-EEecCC----CcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCEE
Confidence 988322 23579999998 6654 2 222222 3456789999999 7777766 56789999999999888
Q ss_pred EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe
Q 004816 336 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI 403 (729)
Q Consensus 336 ~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~ 403 (729)
.++... ....+.|++ +++.|++.+...+...||+++++++..+.|+.....+..+
T Consensus 349 ~l~~~~-~~~~~~~sp------------dg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~ 403 (415)
T 2hqs_A 349 VLSSTF-LDETPSLAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFP 403 (415)
T ss_dssp ECCCSS-SCEEEEECT------------TSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEE
T ss_pred EecCCC-CcCCeEEcC------------CCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCC
Confidence 776433 444566665 8888999999889999999999999999998877766655
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-20 Score=185.09 Aligned_cols=178 Identities=18% Similarity=0.207 Sum_probs=143.4
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHh----
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG---- 564 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~---- 564 (729)
.++.|+||++||.... ...|...++.|+++||.|+.+|+||.+..... ...|+..+++++.+
T Consensus 51 ~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~~------------~~~d~~~~~~~l~~~~~~ 116 (262)
T 1jfr_A 51 DGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQPDS------------RGRQLLSALDYLTQRSSV 116 (262)
T ss_dssp TCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCHHH------------HHHHHHHHHHHHHHTSTT
T ss_pred CCCCCEEEEeCCcCCC--chhHHHHHHHHHhCCCEEEEeCCCCCCCCCch------------hHHHHHHHHHHHHhcccc
Confidence 3457999999998543 34566788899999999999999986643321 24678889999987
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCC
Q 004816 565 SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDK 643 (729)
Q Consensus 565 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 643 (729)
...++.++++++|||+||++++.++. +|+ ++++|+.+|... ...+.+
T Consensus 117 ~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~-------------------------------~~~~~~ 164 (262)
T 1jfr_A 117 RTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT-------------------------------DKTWPE 164 (262)
T ss_dssp GGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-------------------------------CCCCTT
T ss_pred ccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc-------------------------------cccccc
Confidence 34457789999999999999999997 776 899999888532 123556
Q ss_pred CCCCEEEEEeCCCCCCChHH-HHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCCC
Q 004816 644 FSCPIILFQGLEDKVVPPDQ-ARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHF 714 (729)
Q Consensus 644 i~~PvL~i~G~~D~~vp~~~-~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 714 (729)
+++|+|+++|++|.+++++. +.++++.++ .+.+++++++++++|.+... ...++.+.+.+||+++++..
T Consensus 165 ~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~H~~~~~-~~~~~~~~i~~fl~~~l~~~ 234 (262)
T 1jfr_A 165 LRTPTLVVGADGDTVAPVATHSKPFYESLP-GSLDKAYLELRGASHFTPNT-SDTTIAKYSISWLKRFIDSD 234 (262)
T ss_dssp CCSCEEEEEETTCSSSCTTTTHHHHHHHSC-TTSCEEEEEETTCCTTGGGS-CCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEecCccccCCchhhHHHHHHHhh-cCCCceEEEeCCCCcCCccc-chHHHHHHHHHHHHHHhcCc
Confidence 78999999999999999998 999999984 45688999999999987543 33678899999999999744
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-20 Score=186.75 Aligned_cols=243 Identities=15% Similarity=0.108 Sum_probs=161.3
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh--hhHHH-hhCCcEEEEecCCCCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYW-TSRGWAFVDVNYGGSTG 534 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~l-a~~G~~v~~~d~rGs~g 534 (729)
.+.+++.+...|..+.++++.|.+......+.++.|+||++||+++... .+.. ....+ .+.|+.|+.+|+++++.
T Consensus 7 ~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 84 (263)
T 2uz0_A 7 VMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNHN--SWLKRTNVERLLRGTNLIVVMPNTSNGWY 84 (263)
T ss_dssp EEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCTT--HHHHHSCHHHHTTTCCCEEEECCCTTSTT
T ss_pred EeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCHH--HHHhccCHHHHHhcCCeEEEEECCCCCcc
Confidence 4566776654788999999999873101112467899999999864432 3333 23444 45799999999987643
Q ss_pred CchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhc
Q 004816 535 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAET 614 (729)
Q Consensus 535 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~ 614 (729)
..... ...+.....+|+...++.+..+..+|.++++|+|||+||++++.++.+|++|+++++.+|..++..+....
T Consensus 85 ~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~v~~~~~~~~~~~~~~~ 160 (263)
T 2uz0_A 85 TDTQY----GFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLALTTNRFSHAASFSGALSFQNFSPES 160 (263)
T ss_dssp SBCTT----SCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHHHHCCCSEEEEESCCCCSSSCCGGG
T ss_pred ccCCC----cccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHhCccccceEEEecCCcchhhccccc
Confidence 21110 00000112456666666654434567899999999999999988766888999999999988765422100
Q ss_pred c-hhhhhhhhhhcCC--hhhhhhcCcccccCCCC--CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 615 H-KFESRYIDNLVGS--EKDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 615 ~-~~~~~~~~~~~~~--~~~~~~~sp~~~~~~i~--~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
. .....+....++. ...+...+|...+.+++ +|+|++||++|.++ .++.++++.|+..|.+++++++++ +|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v--~~~~~~~~~l~~~g~~~~~~~~~g-~H~ 237 (263)
T 2uz0_A 161 QNLGSPAYWRGVFGEIRDWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLY--EANNLAVKNLKKLGFDVTYSHSAG-THE 237 (263)
T ss_dssp TTCSCHHHHHHHHCCCSCTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTH--HHHHHHHHHHHHTTCEEEEEEESC-CSS
T ss_pred cccccchhHHHHcCChhhhccccCCHHHHHHhccCCCeEEEEeCCCchhh--HHHHHHHHHHHHCCCCeEEEECCC-CcC
Confidence 0 0011112222221 23445566766676665 79999999999987 457899999999999999999999 997
Q ss_pred cCCcccHHHHHHHHHHHHHHHhC
Q 004816 690 FRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 690 ~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+. .+...++.+++||.++|+
T Consensus 238 ~~---~~~~~~~~~~~~l~~~l~ 257 (263)
T 2uz0_A 238 WY---YWEKQLEVFLTTLPIDFK 257 (263)
T ss_dssp HH---HHHHHHHHHHHHSSSCCC
T ss_pred HH---HHHHHHHHHHHHHHhhcc
Confidence 63 335677889999988887
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-19 Score=184.40 Aligned_cols=234 Identities=16% Similarity=0.179 Sum_probs=163.9
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH
Q 004816 462 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541 (729)
Q Consensus 462 ~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~ 541 (729)
.+... +|.++.++++.|.+ ++.|+||++||.+.. ...|...++.|+++||.|+++|+||.|......
T Consensus 21 ~~~~~-~g~~l~~~~~~~~~--------~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~-- 87 (303)
T 3pe6_A 21 HLVNA-DGQYLFCRYWAPTG--------TPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVGHGQSEGER-- 87 (303)
T ss_dssp EEECT-TSCEEEEEEECCSS--------CCSEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTSTTSCSST--
T ss_pred eEecC-CCeEEEEEEeccCC--------CCCeEEEEECCCCch--hhHHHHHHHHHHhCCCcEEEeCCCCCCCCCCCC--
Confidence 56665 89999999998754 346899999998543 346778889999999999999999876544221
Q ss_pred hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc-chhhh
Q 004816 542 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HKFES 619 (729)
Q Consensus 542 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~-~~~~~ 619 (729)
.....-...++|+.++++++..+ .+.++++++|||+||.+++.++. +|++++++|+.+|........... .....
T Consensus 88 -~~~~~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 164 (303)
T 3pe6_A 88 -MVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAA 164 (303)
T ss_dssp -TCCSSTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHH
Confidence 00001112378899999998876 34579999999999999999998 999999999999976543211100 00000
Q ss_pred hhhhhhc-------------C-Chh---hhhh---------------------cCcccccCCCCCCEEEEEeCCCCCCCh
Q 004816 620 RYIDNLV-------------G-SEK---DYYE---------------------KSPINFVDKFSCPIILFQGLEDKVVPP 661 (729)
Q Consensus 620 ~~~~~~~-------------~-~~~---~~~~---------------------~sp~~~~~~i~~PvL~i~G~~D~~vp~ 661 (729)
....... . +.. .+.. ......+.++++|+|+++|++|..+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~ 244 (303)
T 3pe6_A 165 KVLNSVLPNLSSGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDS 244 (303)
T ss_dssp HHHHTTCCSCCCCCCCGGGTCSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSBCH
T ss_pred HHHHHhcccccCCccchhhhhcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCh
Confidence 0000000 0 000 0000 011134678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEECCCCcccCC--cccHHHHHHHHHHHHHHHhCC
Q 004816 662 DQARKIYKALKENGLPVALVEYEGEQHGFRK--AENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 662 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~l~~ 713 (729)
+.++++++.+.. ..+++++++++||.+.. ++...+.++.+++||.+++..
T Consensus 245 ~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~~ 296 (303)
T 3pe6_A 245 KGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 296 (303)
T ss_dssp HHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhccc--CCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccCCC
Confidence 999999888753 35799999999998643 344668888999999998863
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=178.52 Aligned_cols=189 Identities=15% Similarity=0.056 Sum_probs=141.3
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEe-------------------cCCCCCCCchhHHHhhccCCCc
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV-------------------NYGGSTGYGREFRERLLGRWGI 549 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~-------------------d~rGs~g~g~~~~~~~~~~~~~ 549 (729)
.++.|+||++||.++. ...|...+..|+++||.|+++ |++|............ .
T Consensus 20 ~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~~~~~~~~~-----~ 92 (232)
T 1fj2_A 20 RKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGI-----K 92 (232)
T ss_dssp SCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHH-----H
T ss_pred CCCCceEEEEecCCCc--cchHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccCCcccccccHHH-----H
Confidence 4567999999998543 344666777888889999998 5554311110000000 0
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCC
Q 004816 550 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 628 (729)
Q Consensus 550 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 628 (729)
...+|+.++++++.+ ..+|.++++++|||+||++++.++. +|++++++|+.+|..+......
T Consensus 93 ~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~---------------- 155 (232)
T 1fj2_A 93 QAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP---------------- 155 (232)
T ss_dssp HHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC----------------
T ss_pred HHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCcccc----------------
Confidence 125677777887776 5577799999999999999999998 8999999999999765432110
Q ss_pred hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCC--EEEEEECCCCcccCCcccHHHHHHHHHHH
Q 004816 629 EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP--VALVEYEGEQHGFRKAENIKFTLEQQMVF 706 (729)
Q Consensus 629 ~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~--~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 706 (729)
.....+..+++|+|+++|++|.++|++.++++++.+++.+.+ ++++++++++|.+. .+..+.+.+|
T Consensus 156 -------~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~H~~~-----~~~~~~i~~~ 223 (232)
T 1fj2_A 156 -------QGPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQEMMDVKQF 223 (232)
T ss_dssp -------SSCCCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HHHHHHHHHH
T ss_pred -------ccccccccCCCCEEEEecCCCccCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCcccC-----HHHHHHHHHH
Confidence 011235667899999999999999999999999999988854 99999999999872 2445889999
Q ss_pred HHHHhCC
Q 004816 707 FARVVGH 713 (729)
Q Consensus 707 l~~~l~~ 713 (729)
|.++++.
T Consensus 224 l~~~l~~ 230 (232)
T 1fj2_A 224 IDKLLPP 230 (232)
T ss_dssp HHHHSCC
T ss_pred HHHhcCC
Confidence 9999874
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=184.94 Aligned_cols=191 Identities=19% Similarity=0.151 Sum_probs=140.5
Q ss_pred CCCCCCEEEEEcCCCCCCccccchhhhHHHhhC--CcEEEEecCC---CCCCCchhHHHhh--ccCCC-------cccHH
Q 004816 488 PEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYG---GSTGYGREFRERL--LGRWG-------IVDVN 553 (729)
Q Consensus 488 ~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~--G~~v~~~d~r---Gs~g~g~~~~~~~--~~~~~-------~~~~~ 553 (729)
++++.|+||++||.+ .....+..+++.|+.+ ++.+++++-+ ...+.|..|.... ..... ....+
T Consensus 62 ~~~~~plVI~LHG~G--~~~~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~~~~~~~~~~~~ 139 (285)
T 4fhz_A 62 PGEATSLVVFLHGYG--ADGADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAAAEGMAAAAR 139 (285)
T ss_dssp TTCCSEEEEEECCTT--BCHHHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCC--CCHHHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccchhhHHHHHHHH
Confidence 467789999999963 3334455566777654 8899988732 1223454442110 00000 01145
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhh
Q 004816 554 DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDY 632 (729)
Q Consensus 554 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (729)
++.+.++.+.++..+|++||+|+|+|+||++++.++. +|++|+++|++++....... +
T Consensus 140 ~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~~~~---------------------~ 198 (285)
T 4fhz_A 140 DLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLAPER---------------------L 198 (285)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSCHHH---------------------H
T ss_pred HHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccCchh---------------------h
Confidence 5667777777777899999999999999999999987 99999999999885422110 0
Q ss_pred hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 633 YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 633 ~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
. ...+.++|+|++||++|.+||+++++++++.|+++|.++++++|++.||.+. .+.++.+.+||+++|.
T Consensus 199 ~------~~~~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~y~g~gH~i~-----~~~l~~~~~fL~~~Lp 267 (285)
T 4fhz_A 199 A------EEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGIA-----PDGLSVALAFLKERLP 267 (285)
T ss_dssp H------HHCCCCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHHHHCC
T ss_pred h------hhhhhcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-----HHHHHHHHHHHHHHCc
Confidence 0 0123468999999999999999999999999999999999999999999874 2456789999999995
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=179.48 Aligned_cols=210 Identities=13% Similarity=0.073 Sum_probs=149.1
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCC-chhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY-GREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~-g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
+.|+||++||.+.+ ...|...++.|+++||.|+++|+||.+.. +...... ..+ ....+|+.++++++..+
T Consensus 21 ~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~--~~~-~~~~~d~~~~i~~l~~~---- 91 (251)
T 3dkr_A 21 TDTGVVLLHAYTGS--PNDMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTK--GNP-DIWWAESSAAVAHMTAK---- 91 (251)
T ss_dssp SSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHHHH--CCH-HHHHHHHHHHHHHHHTT----
T ss_pred CCceEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEecCCCCCCCCChhhhcCc--ccH-HHHHHHHHHHHHHHHHh----
Confidence 45789999997544 34677888999999999999999987765 2222211 011 11268889999999876
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH--HhhhcchhhhhhhhhhcCC-------------hhhhh
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--LRAETHKFESRYIDNLVGS-------------EKDYY 633 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~-------------~~~~~ 633 (729)
.++++++|||+||++++.++. +|++++++++.+|...... .... ..+..........+ ...+.
T Consensus 92 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (251)
T 3dkr_A 92 YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGF-LKYAEYMNRLAGKSDESTQILAYLPGQLAAID 170 (251)
T ss_dssp CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHH-HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHH-HHHHHHHHhhcccCcchhhHHhhhHHHHHHHH
Confidence 579999999999999999998 8999999999998765321 1000 00000000000000 00000
Q ss_pred --hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 634 --EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 634 --~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
.......+.++++|+|+++|++|..+|++.+.++++.+... .+++++++++++|.+....+..+..+.+.+|+++..
T Consensus 171 ~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~~ 249 (251)
T 3dkr_A 171 QFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHALEEDVIAFMQQEN 249 (251)
T ss_dssp HHHHHHHHTGGGCCSCEEEEEETTCSSBCTTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccccCCCEEEEecCCCcccChHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhHHHHHHHHHHHhhc
Confidence 01123456788999999999999999999999999998764 578999999999988665567889999999998754
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-19 Score=178.19 Aligned_cols=218 Identities=15% Similarity=0.093 Sum_probs=153.0
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc-----chhhhHHHhhC----CcEEEE
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-----LNLSIQYWTSR----GWAFVD 526 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~-----~~~~~~~la~~----G~~v~~ 526 (729)
.+.+.+++.+..+|..+.+++|.|.+.. +.+++|+||++||++.....+. +...++.|+++ ||.|+.
T Consensus 30 g~~~~~~~~s~~~~~~~~~~v~~P~~~~----~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~ 105 (268)
T 1jjf_A 30 GQVVNISYFSTATNSTRPARVYLPPGYS----KDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVT 105 (268)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECTTCC----TTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEE
T ss_pred ceEEEEEEeccccCCceEEEEEeCCCCC----CCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEE
Confidence 3456777776546889999999998732 2567899999999865432221 12246667776 599999
Q ss_pred ecCCCCCCC-chhHHHhhccCCCcccHHH-HHHHHHHHHhCCCC--CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEe
Q 004816 527 VNYGGSTGY-GREFRERLLGRWGIVDVND-CCSCATFLVGSGKA--DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASL 601 (729)
Q Consensus 527 ~d~rGs~g~-g~~~~~~~~~~~~~~~~~D-~~~~~~~l~~~~~~--d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~ 601 (729)
+|+++.+.. ...+.. ..++ +..+++++.++..+ |++|++|+|+|+||++++.++. +|++|+++++.
T Consensus 106 ~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 176 (268)
T 1jjf_A 106 PNTNAAGPGIADGYEN---------FTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPI 176 (268)
T ss_dssp ECCCCCCTTCSCHHHH---------HHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEE
T ss_pred eCCCCCCccccccHHH---------HHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEe
Confidence 999975431 111110 1233 45566777665444 7899999999999999999987 89999999999
Q ss_pred ccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCC-CEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEE
Q 004816 602 YGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC-PIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 680 (729)
Q Consensus 602 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~-PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 680 (729)
+|..++.... ..+.+... ....+. |+|++||++|.++|. ++++++.|+++|+++++
T Consensus 177 s~~~~~~~~~------------~~~~~~~~---------~~~~~~pp~li~~G~~D~~v~~--~~~~~~~l~~~g~~~~~ 233 (268)
T 1jjf_A 177 SAAPNTYPNE------------RLFPDGGK---------AAREKLKLLFIACGTNDSLIGF--GQRVHEYCVANNINHVY 233 (268)
T ss_dssp SCCTTSCCHH------------HHCTTTTH---------HHHHHCSEEEEEEETTCTTHHH--HHHHHHHHHHTTCCCEE
T ss_pred CCCCCCCchh------------hhcCcchh---------hhhhcCceEEEEecCCCCCccH--HHHHHHHHHHCCCceEE
Confidence 9976542210 00111000 001134 499999999998874 78899999999999999
Q ss_pred EEECCCCcccCCcccHHHHHHHHHHHHHHH-hC
Q 004816 681 VEYEGEQHGFRKAENIKFTLEQQMVFFARV-VG 712 (729)
Q Consensus 681 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~-l~ 712 (729)
+++++++|.+. .+...+..+++||.+. +.
T Consensus 234 ~~~~g~~H~~~---~~~~~~~~~~~~l~~~~~~ 263 (268)
T 1jjf_A 234 WLIQGGGHDFN---VWKPGLWNFLQMADEAGLT 263 (268)
T ss_dssp EEETTCCSSHH---HHHHHHHHHHHHHHHHTTT
T ss_pred EEcCCCCcCHh---HHHHHHHHHHHHHHhcCcc
Confidence 99999999873 3456678889999886 44
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=195.21 Aligned_cols=324 Identities=13% Similarity=0.090 Sum_probs=202.7
Q ss_pred ccCCCCCCCCcCCHHH---HhccCCc-----cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcc
Q 004816 68 ITAPYGSWKSPLTADV---VSGASKR-----LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAV 138 (729)
Q Consensus 68 ~~~~~~~~~~~lt~e~---i~~~~~~-----~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~ 138 (729)
..++|++|-.+.|-+. +...... +..++||| |++++|+..+ ++...||.++.. +++.++++.....
T Consensus 7 ~~~~~~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~---~g~~~l~~~d~~-~~~~~~l~~~~~~- 81 (396)
T 3c5m_A 7 ITLNFETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF---DGNRNYYLLNLE-TQQAVQLTEGKGD- 81 (396)
T ss_dssp EECCEEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT---TSSCEEEEEETT-TTEEEECCCSSCB-
T ss_pred cchhhheeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec---CCCceEEEEECC-CCcEEEeecCCCC-
Confidence 3456777766655332 2222122 67899999 9999998763 344567777766 3355666543210
Q ss_pred cccccccCCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeec-------------------ceec
Q 004816 139 RTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYAD-------------------GIFD 199 (729)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~-------------------~~~S 199 (729)
......|+++++.|+|.... ++||++++++ ++.++++.... ....+ +.|+
T Consensus 82 -----~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~--~~~~~~~~~~~---~~~~~g~~l~~~~~~~~~~~~~~~~~~s 150 (396)
T 3c5m_A 82 -----NTFGGFISTDERAFFYVKNE-LNLMKVDLET--LEEQVIYTVDE---EWKGYGTWVANSDCTKLVGIEILKRDWQ 150 (396)
T ss_dssp -----CTTTCEECTTSSEEEEEETT-TEEEEEETTT--CCEEEEEECCT---TEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred -----ccccceECCCCCEEEEEEcC-CcEEEEECCC--CCcEEEEeccc---ccCCCCCEEEeccCCccccccccccccC
Confidence 11224566777788888754 4799999998 77777775321 11111 4567
Q ss_pred CCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEec
Q 004816 200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYIS 278 (729)
Q Consensus 200 PdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~ 278 (729)
|||+.+++...... .....||++|+++++.+.++........+.||| ||++|+|+.. ... .....+||++|++
T Consensus 151 pdg~~~~~~~~~~~----~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~-~~~-~~~~~~l~~~d~~ 224 (396)
T 3c5m_A 151 PLTSWEKFAEFYHT----NPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHE-GPH-DLVDARMWLVNED 224 (396)
T ss_dssp CCCSHHHHHHHHHT----CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEEC-SCS-SSCSCCCEEEETT
T ss_pred CCCcceeeeeeccC----CCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEec-CCC-CCCCceEEEEECC
Confidence 77766554431000 113689999999999988887666778899999 8999999973 211 0112579999987
Q ss_pred CCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceE--EEEEEcCCCeEEEeeccCccccCCcccccCcc
Q 004816 279 ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN--LHKWIESNNEVLAIYSLDAEFSRPLWVFGINS 355 (729)
Q Consensus 279 ~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~--l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~ 355 (729)
+++. ..+..... . ..+..+.|+|||+ |+|.+.. .+... |+++|+++++.+.+...... . +.|++.
T Consensus 225 -~~~~--~~l~~~~~-~--~~~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~~~-~-~~~s~~--- 292 (396)
T 3c5m_A 225 -GSNV--RKIKEHAE-G--ESCTHEFWIPDGSAMAYVSYF-KGQTDRVIYKANPETLENEEVMVMPPC-S-HLMSNF--- 292 (396)
T ss_dssp -SCCC--EESSCCCT-T--EEEEEEEECTTSSCEEEEEEE-TTTCCEEEEEECTTTCCEEEEEECCSE-E-EEEECS---
T ss_pred -CCce--eEeeccCC-C--ccccceEECCCCCEEEEEecC-CCCccceEEEEECCCCCeEEeeeCCCC-C-CCccCC---
Confidence 5543 22222211 1 3456789999999 8888776 45544 99999999988877643321 1 444430
Q ss_pred eeeeeecCCCCEEEEEEE-------------ECCeEEEEEEECCCCceEeeccCCcc-----------eE--EeeeeCCE
Q 004816 356 YEIIQSHGEKNLIACSYR-------------QNGRSYLGILDDFGHSLSLLDIPFTD-----------ID--NITLGNDC 409 (729)
Q Consensus 356 ~~~l~~~~~~~~l~~~s~-------------~~g~~~ly~~d~~~g~~~~lt~~~~~-----------v~--~~~~~~~~ 409 (729)
+++.+++... ..+...||++++++++.++|+..... .. .++++++.
T Consensus 293 --------dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 364 (396)
T 3c5m_A 293 --------DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDG 364 (396)
T ss_dssp --------SSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred --------CCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCe
Confidence 3444444321 13557899999999988888765431 22 22455555
Q ss_pred EEEEEeCCCCCceEEEEEcCCCcce
Q 004816 410 LFVEGASGVEPSSVAKVTLDDHKLK 434 (729)
Q Consensus 410 ~~~~~~~~~~~~~ly~~d~~~~~~~ 434 (729)
++ +.+......+||++++++++.+
T Consensus 365 l~-~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 365 VL-FTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp EE-EEECTTSSCEEEEEECCTTCC-
T ss_pred EE-EEecCCCCceEEEEEEcccccc
Confidence 54 4455556678999999888753
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=191.38 Aligned_cols=231 Identities=13% Similarity=0.041 Sum_probs=159.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.+.++. +|..+.++++.|.+ .++.|+||++||..+.. ...+....+.++++||.|+++|+||.|...
T Consensus 167 ~~~~v~i~~--~g~~l~~~~~~P~~-------~~~~P~vv~~hG~~~~~-~~~~~~~~~~l~~~G~~V~~~D~~G~G~s~ 236 (415)
T 3mve_A 167 IIKQLEIPF--EKGKITAHLHLTNT-------DKPHPVVIVSAGLDSLQ-TDMWRLFRDHLAKHDIAMLTVDMPSVGYSS 236 (415)
T ss_dssp EEEEEEEEC--SSSEEEEEEEESCS-------SSCEEEEEEECCTTSCG-GGGHHHHHHTTGGGTCEEEEECCTTSGGGT
T ss_pred CeEEEEEEE--CCEEEEEEEEecCC-------CCCCCEEEEECCCCccH-HHHHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence 356777877 68899999999965 45679999999974332 233445567888999999999999765432
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH----h
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML----R 611 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~----~ 611 (729)
. .....+ .......+++++.....+|.++|+|+|||+||++++.++. +|++++++|+.+|+.+.... .
T Consensus 237 ~---~~~~~~----~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~ 309 (415)
T 3mve_A 237 K---YPLTED----YSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKL 309 (415)
T ss_dssp T---SCCCSC----TTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHH
T ss_pred C---CCCCCC----HHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHH
Confidence 1 111111 1233467888888887788899999999999999999998 89999999999998653211 1
Q ss_pred hhcchhhhhhhhhhcC----Chh----hhhhcCcccc----cCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEE
Q 004816 612 AETHKFESRYIDNLVG----SEK----DYYEKSPINF----VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 679 (729)
Q Consensus 612 ~~~~~~~~~~~~~~~~----~~~----~~~~~sp~~~----~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 679 (729)
..........+....+ ... .+...++... +.++++|+|+++|++|.++|++++..+.+ .+.+++
T Consensus 310 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~l~~----~~~~~~ 385 (415)
T 3mve_A 310 QQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAF----FSTYGK 385 (415)
T ss_dssp TTSCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSCHHHHHHHHH----TBTTCE
T ss_pred HHhHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCCHHHHHHHHH----hCCCce
Confidence 1111111111111111 111 1222333222 46788999999999999999998887766 455779
Q ss_pred EEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 680 LVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 680 ~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
++++++..|. ....+.++.+.+||.++|.
T Consensus 386 l~~i~g~~~h----~~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 386 AKKISSKTIT----QGYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp EEEECCCSHH----HHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcc----cchHHHHHHHHHHHHHHhc
Confidence 9999983221 2556788999999999885
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=188.47 Aligned_cols=228 Identities=19% Similarity=0.243 Sum_probs=159.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCC-ccccchhhhHHHh-hCCcEEEEecCCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWT-SRGWAFVDVNYGGSTG 534 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~la-~~G~~v~~~d~rGs~g 534 (729)
..+.+.++.. +| .+.+++| +. .++.|+||++||+++.. ....+..+...|+ ..||.|+.+||||.+.
T Consensus 55 ~~~~~~i~~~-~g-~i~~~~y-~~--------~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~ 123 (311)
T 1jji_A 55 RVEDRTIKGR-NG-DIRVRVY-QQ--------KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPE 123 (311)
T ss_dssp EEEEEEEEET-TE-EEEEEEE-ES--------SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTT
T ss_pred eEEEEEecCC-CC-cEEEEEE-cC--------CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 4678888886 66 8888888 42 24569999999986422 2234566778888 5799999999998775
Q ss_pred CchhHHHhhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh-CCCc----ceEEEEeccccC
Q 004816 535 YGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-FRDT----FKAGASLYGVAD 606 (729)
Q Consensus 535 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~----~~a~v~~~~~~d 606 (729)
+... ...+|+.++++|+.+. ..+|+++|+|+|+|+||++++.++. ++++ ++++|+.+|..+
T Consensus 124 ~~~p-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~ 192 (311)
T 1jji_A 124 HKFP-----------AAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVN 192 (311)
T ss_dssp SCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCC
T ss_pred CCCC-----------CcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccC
Confidence 4321 2368899999999875 2467789999999999999998886 5544 999999999887
Q ss_pred hhHHhhhcch-------h----hhhhhhhhcCCh--hhhhhcCccc-ccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHH
Q 004816 607 LSMLRAETHK-------F----ESRYIDNLVGSE--KDYYEKSPIN-FVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 672 (729)
Q Consensus 607 ~~~~~~~~~~-------~----~~~~~~~~~~~~--~~~~~~sp~~-~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~ 672 (729)
.......... . ...+.....+.. ......+|+. .+..+ +|+|+++|++|.++ .++.++++.|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~--~~~~~~~~~l~ 269 (311)
T 1jji_A 193 FVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENL-PPALIITAEYDPLR--DEGEVFGQMLR 269 (311)
T ss_dssp SSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTC-CCEEEEEEEECTTH--HHHHHHHHHHH
T ss_pred CCCCCccHHHhcCCCccCCHHHHHHHHHHhCCCCccCCCcccCcccccccCC-ChheEEEcCcCcch--HHHHHHHHHHH
Confidence 5321110000 0 011111111111 1111234443 22222 69999999999987 47888999999
Q ss_pred hCCCCEEEEEECCCCcccCC----cccHHHHHHHHHHHHHH
Q 004816 673 ENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFAR 709 (729)
Q Consensus 673 ~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~ 709 (729)
++|++++++++++++|+|.. .+...++++.+.+||++
T Consensus 270 ~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 270 RAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HcCCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 99999999999999998753 24456788888899864
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-19 Score=196.33 Aligned_cols=251 Identities=12% Similarity=0.112 Sum_probs=174.2
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-----------------cc----hhh
Q 004816 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----------------IL----NLS 513 (729)
Q Consensus 455 ~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-----------------~~----~~~ 513 (729)
+...+.+.++.. ||.+|.++++.|++ .++.|+||+.||........ .+ ...
T Consensus 38 ~~~~~~v~i~~~-DG~~L~a~l~~P~~-------~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 109 (560)
T 3iii_A 38 MIMEKDGTVEMR-DGEKLYINIFRPNK-------DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPD 109 (560)
T ss_dssp EEEEEEEEEECT-TSCEEEEEEEECSS-------SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCC
T ss_pred eEEEEEEEEECC-CCcEEEEEEEecCC-------CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCC
Confidence 334577889998 99999999999976 46789999999864331100 01 123
Q ss_pred hHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CC
Q 004816 514 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR 592 (729)
Q Consensus 514 ~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~ 592 (729)
+++|+++||+|+.+|+||+++++..+. .++..+.+|+.++++||.+++..| .||+++|+|+||++++.++. +|
T Consensus 110 ~~~la~~Gy~vv~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p 183 (560)
T 3iii_A 110 PGFWVPNDYVVVKVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNP 183 (560)
T ss_dssp HHHHGGGTCEEEEEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCEEEEEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCC
Confidence 689999999999999999998776543 244467899999999999988777 89999999999999999988 88
Q ss_pred CcceEEEEeccccChhHH-hh-hc-c--hh---hhh--------------hhhhhcC--Ch-hhhhhcCcccccCCCCCC
Q 004816 593 DTFKAGASLYGVADLSML-RA-ET-H--KF---ESR--------------YIDNLVG--SE-KDYYEKSPINFVDKFSCP 647 (729)
Q Consensus 593 ~~~~a~v~~~~~~d~~~~-~~-~~-~--~~---~~~--------------~~~~~~~--~~-~~~~~~sp~~~~~~i~~P 647 (729)
+.++|+|+.+|+.|+..- .. .. . .+ ... +...... .. +.|...++ .+++|++|
T Consensus 184 ~~l~aiv~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d~~W~~~~~--~~~~I~vP 261 (560)
T 3iii_A 184 PHLKAMIPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQV--PLSQIKTP 261 (560)
T ss_dssp TTEEEEEEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSCHHHHTTBC--CGGGCCSC
T ss_pred CceEEEEecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcchHhhccCC--chhhCCCC
Confidence 999999999999987531 10 00 0 00 000 0000000 11 22333443 67899999
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCCCCCC-CCCCceecc
Q 004816 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVA-DEIIPIKID 726 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~-~~~~~~~~~ 726 (729)
+|+++|..|..+...++.+.+++|+..+ ..+++-+ .+|.-. .......+.+++||+.+|++.... ...|++.+.
T Consensus 262 vl~v~Gw~D~~~~~~g~l~~y~~l~~~~--k~l~ih~-~~~~~~--~~~~~~~~~~~~wfD~~LkG~~ng~~~~p~V~~~ 336 (560)
T 3iii_A 262 LLTCASWSTQGLHNRGSFEGFKQAASEE--KWLYVHG-RKEWES--YYARENLERQKSFFDFYLKEENNDWKDTPHVIYE 336 (560)
T ss_dssp EEEEEEGGGTTTTHHHHHHHHHHCCCSS--EEEEEES-SCHHHH--HHSHHHHHHHHHHHHHHTSCCCCSGGGSCSEEEE
T ss_pred EEEeCCcCCCcccchhHHHHHHhccccC--cEEEECC-CCCcCc--ccChhHHHHHHHHHHHHhCCCCCCCCCCCcEEEE
Confidence 9999999997666777888888776543 2444322 233210 011245678899999999977654 446777653
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=187.73 Aligned_cols=218 Identities=12% Similarity=0.111 Sum_probs=150.1
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCC-ccccchhhhHHHh-hCCcEEEEecCCCCCCCchhHHHhhccCCCc
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGI 549 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~la-~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~ 549 (729)
+.++++.|.+ ++.|+||++|||++.. ....+...+..|+ +.||.|+++||||+++....
T Consensus 84 ~~~~~~~p~~--------~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~~~----------- 144 (326)
T 3d7r_A 84 MQVFRFNFRH--------QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFHID----------- 144 (326)
T ss_dssp EEEEEEESTT--------CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSCHH-----------
T ss_pred EEEEEEeeCC--------CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCCch-----------
Confidence 5556677753 3458999999986432 2334455666676 45999999999987653221
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCc----ceEEEEeccccChhHHhhhcc-hh------
Q 004816 550 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDT----FKAGASLYGVADLSMLRAETH-KF------ 617 (729)
Q Consensus 550 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~----~~a~v~~~~~~d~~~~~~~~~-~~------ 617 (729)
..++|+.++++++.++ ++.++++|+|||+||++|+.++. ++++ ++++|+.+|+.+......... ..
T Consensus 145 ~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~ 222 (326)
T 3d7r_A 145 DTFQAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDISDALIEQDAV 222 (326)
T ss_dssp HHHHHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCCHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHHhhhcccCcc
Confidence 2368999999999887 67889999999999999999987 6555 999999999877542111100 00
Q ss_pred -h----hhhhhhhcCC-hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC
Q 004816 618 -E----SRYIDNLVGS-EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691 (729)
Q Consensus 618 -~----~~~~~~~~~~-~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 691 (729)
. ..+.....+. .......+|+...-...+|+|+++|++|. +..++.++++.+++.+.+++++++|+++|.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~--~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~ 300 (326)
T 3d7r_A 223 LSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREM--THPDMKLFEQMMLQHHQYIEFYDYPKMVHDFP 300 (326)
T ss_dssp CCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCTTCCCEEEEEETTST--THHHHHHHHHHHHHTTCCEEEEEETTCCTTGG
T ss_pred cCHHHHHHHHHHhcCCCCCCCCeECcccCCcccCCCEEEEEeCccc--chHHHHHHHHHHHHCCCcEEEEEeCCCccccc
Confidence 0 0000000010 00111223433211223699999999996 45678899999999999999999999999875
Q ss_pred C--cccHHHHHHHHHHHHHHHhC
Q 004816 692 K--AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 692 ~--~~~~~~~~~~~~~fl~~~l~ 712 (729)
. .+...++.+.+.+|+++++.
T Consensus 301 ~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 301 IYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp GSSSHHHHHHHHHHHHHHTSCCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHhh
Confidence 4 35667888999999988765
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=175.69 Aligned_cols=184 Identities=11% Similarity=0.075 Sum_probs=134.7
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH-----h-hccCC----CcccHHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE-----R-LLGRW----GIVDVNDCCSC 558 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~-----~-~~~~~----~~~~~~D~~~~ 558 (729)
.++.| ||++||.++. ...|...++.|+ .||.|+++|.++..+.+..|.. . ..+.. -....+++.+.
T Consensus 14 ~~~~p-vv~lHG~g~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~ 89 (209)
T 3og9_A 14 KDLAP-LLLLHSTGGD--EHQLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTDE 89 (209)
T ss_dssp TTSCC-EEEECCTTCC--TTTTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEEeCCCCC--HHHHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHHHHHHHHHHH
Confidence 34568 9999997433 345667777777 7999999995532211111111 0 00000 01235666677
Q ss_pred HHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCc
Q 004816 559 ATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSP 637 (729)
Q Consensus 559 ~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 637 (729)
++.+.++..+|+++++|+|||+||++++.++. +|++++++|+.+|......
T Consensus 90 ~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------------------------- 141 (209)
T 3og9_A 90 VSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDF---------------------------- 141 (209)
T ss_dssp HHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCC----------------------------
T ss_pred HHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcc----------------------------
Confidence 77777776788899999999999999999987 9999999999998654211
Q ss_pred ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 638 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 638 ~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
.......++|+|++||++|.++|+++++++++.|++.+.++++++++ .+|.+. .+..+.+.+||+++
T Consensus 142 ~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~-----~~~~~~~~~~l~~~ 208 (209)
T 3og9_A 142 EQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESS-LGHQLT-----QEEVLAAKKWLTET 208 (209)
T ss_dssp CCCCCCTTCEEEEEECTTCSSSCHHHHHHHHHHHHHTTCEEEEEECS-STTSCC-----HHHHHHHHHHHHHH
T ss_pred cccccccCCCEEEEcCCCCCccCHHHHHHHHHHHHHcCCceEEEEcC-CCCcCC-----HHHHHHHHHHHHhh
Confidence 01123457899999999999999999999999999999999999998 699874 34567888999874
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=179.14 Aligned_cols=236 Identities=14% Similarity=0.164 Sum_probs=152.7
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCC-CCCc
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-TGYG 536 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs-~g~g 536 (729)
++...+... +|.+++++.+.|.... .++.|+||++||.+. ....|...++.|+++||.|+++|+||. |.+.
T Consensus 7 ~~~~~i~~~-dG~~l~~~~~~p~~~~-----~~~~~~VvllHG~g~--~~~~~~~~~~~L~~~G~~Vi~~D~rGh~G~S~ 78 (305)
T 1tht_A 7 TIAHVLRVN-NGQELHVWETPPKENV-----PFKNNTILIASGFAR--RMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSS 78 (305)
T ss_dssp CEEEEEEET-TTEEEEEEEECCCTTS-----CCCSCEEEEECTTCG--GGGGGHHHHHHHHTTTCCEEEECCCBCC----
T ss_pred ceEEEEEcC-CCCEEEEEEecCcccC-----CCCCCEEEEecCCcc--CchHHHHHHHHHHHCCCEEEEeeCCCCCCCCC
Confidence 456667776 8999999998875410 234588999999743 345677888999999999999999986 3332
Q ss_pred hhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcc
Q 004816 537 REFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETH 615 (729)
Q Consensus 537 ~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~ 615 (729)
.. ...+.. ...+|+.++++++.+. +.++++++||||||.+++.++..| +++++|+.++..++........
T Consensus 79 ~~-----~~~~~~~~~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~~-~v~~lvl~~~~~~~~~~~~~~~ 149 (305)
T 1tht_A 79 GS-----IDEFTMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISDL-ELSFLITAVGVVNLRDTLEKAL 149 (305)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTTS-CCSEEEEESCCSCHHHHHHHHH
T ss_pred Cc-----ccceehHHHHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCcc-CcCEEEEecCchhHHHHHHHHh
Confidence 11 111221 1257888899998753 347899999999999999999876 8999999888765432211000
Q ss_pred h--hhhhhhhhh------cC---Chhhhh----h------cCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC
Q 004816 616 K--FESRYIDNL------VG---SEKDYY----E------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 674 (729)
Q Consensus 616 ~--~~~~~~~~~------~~---~~~~~~----~------~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~ 674 (729)
. ......... .. ....+. . .+....+.++++|+|+++|++|..+|++.+.++++.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp~~~~~~l~~~i~~- 228 (305)
T 1tht_A 150 GFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT- 228 (305)
T ss_dssp SSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCTT-
T ss_pred hhhhhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhcCC-
Confidence 0 000000000 00 000010 0 012345778999999999999999999988887766532
Q ss_pred CCCEEEEEECCCCcccCC-cccHHHHHHHHHHHHHHHhC
Q 004816 675 GLPVALVEYEGEQHGFRK-AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 675 g~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~fl~~~l~ 712 (729)
.+++++++|++||.+.. ++...++++.+.+|......
T Consensus 229 -~~~~l~~i~~agH~~~e~p~~~~~fl~~~~~~~~~~~~ 266 (305)
T 1tht_A 229 -GHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIAMDG 266 (305)
T ss_dssp -CCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCcEEEEeCCCCCchhhCchHHHHHHHHHHHHHHHhCc
Confidence 25799999999998742 22233455555566555443
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=180.17 Aligned_cols=207 Identities=18% Similarity=0.231 Sum_probs=147.5
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|+||++||.+.. ...|...++.|+++||.|+++|+||.|......... . -....+|+.++++++..+ .+
T Consensus 40 ~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~---~-~~~~~~d~~~~i~~l~~~----~~ 109 (270)
T 3rm3_A 40 PVGVLLVHGFTGT--PHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERT---T-FHDWVASVEEGYGWLKQR----CQ 109 (270)
T ss_dssp SEEEEEECCTTCC--GGGTHHHHHHHHHTTCEEEECCCTTCSSCHHHHHTC---C-HHHHHHHHHHHHHHHHTT----CS
T ss_pred CeEEEEECCCCCC--hhHHHHHHHHHHHCCCEEEEeCCCCCCCCccccccC---C-HHHHHHHHHHHHHHHHhh----CC
Confidence 4899999997543 345778889999999999999999876554322111 1 112378889999998776 57
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchh--hhhhhhhhcC---C------------hhhhh
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKF--ESRYIDNLVG---S------------EKDYY 633 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~--~~~~~~~~~~---~------------~~~~~ 633 (729)
+++++|||+||++++.++. +|+ ++++|+.+|..+........... ...+...... . ...+.
T Consensus 110 ~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (270)
T 3rm3_A 110 TIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLL 188 (270)
T ss_dssp EEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCCCCCSEEEHHHHH
T ss_pred cEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHhhcccccChhHHH
Confidence 9999999999999999998 888 99999999987665433211100 0000000000 0 00000
Q ss_pred -----hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 634 -----EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 634 -----~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
..+....+.++++|+|+++|++|.++|++.+.++++.+.. .+++++++|+++|.+.......+..+.+.+||+
T Consensus 189 ~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~ 266 (270)
T 3rm3_A 189 QLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISS--TEKEIVRLRNSYHVATLDYDQPMIIERSLEFFA 266 (270)
T ss_dssp HHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHSCC--SSEEEEEESSCCSCGGGSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEECCCCcccCHHHHHHHHHhcCC--CcceEEEeCCCCcccccCccHHHHHHHHHHHHH
Confidence 0011234677899999999999999999999999888764 367999999999997665556788999999999
Q ss_pred HHh
Q 004816 709 RVV 711 (729)
Q Consensus 709 ~~l 711 (729)
++.
T Consensus 267 ~~~ 269 (270)
T 3rm3_A 267 KHA 269 (270)
T ss_dssp HHC
T ss_pred hcC
Confidence 874
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=179.84 Aligned_cols=233 Identities=12% Similarity=0.114 Sum_probs=151.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.+.+.. +|..+...++.+.. ..+..|+||++||.+.+ ...|...+..|+++||.|+++|+||.|...
T Consensus 19 ~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~ 88 (315)
T 4f0j_A 19 PVHYLDFTS--QGQPLSMAYLDVAP------KKANGRTILLMHGKNFC--AGTWERTIDVLADAGYRVIAVDQVGFCKSS 88 (315)
T ss_dssp CCEEEEEEE--TTEEEEEEEEEECC------SSCCSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSC
T ss_pred cceeEEEec--CCCCeeEEEeecCC------CCCCCCeEEEEcCCCCc--chHHHHHHHHHHHCCCeEEEeecCCCCCCC
Confidence 456677766 57666655554432 13456899999998544 345778889999999999999999876543
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh---
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA--- 612 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~--- 612 (729)
.. .......+|+.+.+..+++. ++.++++|+|||+||++++.++. +|++++++|+.+|.........
T Consensus 89 ~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 159 (315)
T 4f0j_A 89 KP-------AHYQYSFQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVP 159 (315)
T ss_dssp CC-------SSCCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTCC
T ss_pred CC-------CccccCHHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccch
Confidence 22 11123467777777766665 34569999999999999999998 9999999999998642111000
Q ss_pred ---------hc----chhhhhhhhhhc--------------------CC-------------hhhhhhcCcccccCCCCC
Q 004816 613 ---------ET----HKFESRYIDNLV--------------------GS-------------EKDYYEKSPINFVDKFSC 646 (729)
Q Consensus 613 ---------~~----~~~~~~~~~~~~--------------------~~-------------~~~~~~~sp~~~~~~i~~ 646 (729)
.. ......+..... .. .......+....+.++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (315)
T 4f0j_A 160 WRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQM 239 (315)
T ss_dssp CCCHHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGGCCS
T ss_pred hhhhHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhcccCCC
Confidence 00 000000000000 00 001112234456788999
Q ss_pred CEEEEEeCCCCCCChHHH------------HHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 647 PIILFQGLEDKVVPPDQA------------RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 647 PvL~i~G~~D~~vp~~~~------------~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
|+|+++|++|.++|.++. .+..+.+.+...++++++++++||.+. .++..++.+.+.+||++
T Consensus 240 P~lii~G~~D~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 313 (315)
T 4f0j_A 240 PTLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQ-IQAPERFHQALLEGLQT 313 (315)
T ss_dssp CEEEEEETTCCCCTTGGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCHH-HHSHHHHHHHHHHHHCC
T ss_pred CeEEEEecCCCcCccccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcchh-hhCHHHHHHHHHHHhcc
Confidence 999999999999994332 334444444445789999999999753 34556777777777754
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-19 Score=182.29 Aligned_cols=244 Identities=13% Similarity=0.150 Sum_probs=163.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh---hhHHHhhCCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---~~~~la~~G~~v~~~d~rGs~ 533 (729)
+.+.+++.+...+..+.++ +.|. .+++|+|+++||++.......|.. ..+.+++.||.|+++|++++.
T Consensus 8 ~v~~~~~~S~~~~~~i~v~-~~p~--------~~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~ 78 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ-FQSG--------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSS 78 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECC--------STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTC
T ss_pred eEEEEEEECccCCCceEEE-ECCC--------CCCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCc
Confidence 4577788776457778777 4443 246799999999853222233332 346677889999999998764
Q ss_pred CCchhHHHhhc--cCCCcccHHHH--HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh
Q 004816 534 GYGREFRERLL--GRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 534 g~g~~~~~~~~--~~~~~~~~~D~--~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~ 608 (729)
+|.. +..... +..+....++. ..++.++.++..+++++++|+|+||||++|+.++. +|++|+++++++|..++.
T Consensus 79 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~ 157 (304)
T 1sfr_A 79 FYSD-WYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPS 157 (304)
T ss_dssp TTCB-CSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTT
T ss_pred cccc-cCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcc
Confidence 4421 100000 00001223332 23444554433467789999999999999999988 999999999999987654
Q ss_pred HHh-hh-cc----hhhhhhhhhhcC--ChhhhhhcCcccccCCC---CCCEEEEEeCCCC--------------CCChHH
Q 004816 609 MLR-AE-TH----KFESRYIDNLVG--SEKDYYEKSPINFVDKF---SCPIILFQGLEDK--------------VVPPDQ 663 (729)
Q Consensus 609 ~~~-~~-~~----~~~~~~~~~~~~--~~~~~~~~sp~~~~~~i---~~PvL~i~G~~D~--------------~vp~~~ 663 (729)
... .. .. ..........++ ....+...+|...+.++ ++|+++++|++|. .++.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~~~ 237 (304)
T 1sfr_A 158 QAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTS 237 (304)
T ss_dssp STTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHH
T ss_pred ccchhhhhhHhhhhccccchHHhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHHHHH
Confidence 210 00 00 000000111222 12456677887666555 5899999999998 668899
Q ss_pred HHHHHHHHHhCC-CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCC
Q 004816 664 ARKIYKALKENG-LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 664 ~~~~~~~l~~~g-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 713 (729)
+++++++|+++| +++++++|++++|.+ ..+...+..++.||.++|+-
T Consensus 238 ~~~~~~~L~~~G~~~v~~~~~~~g~H~~---~~w~~~l~~~l~~l~~~l~~ 285 (304)
T 1sfr_A 238 NIKFQDAYNAGGGHNGVFDFPDSGTHSW---EYWGAQLNAMKPDLQRALGA 285 (304)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSCCCSSH---HHHHHHHHHTHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCceEEEecCCCccCH---HHHHHHHHHHHHHHHHhcCC
Confidence 999999999999 999999998779975 34567778899999999984
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-18 Score=165.91 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=147.7
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh--hhHHHhhCCcEEEEecCCCCCCC-
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGGSTGY- 535 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~la~~G~~v~~~d~rGs~g~- 535 (729)
+...+.. +|.++++++|.|.+ +.|+||++||++... ..|.. .++.|+++||.|+.+|+||.+..
T Consensus 5 ~~~~~~~--~g~~l~~~~~~~~~---------~~~~vv~~hG~~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~ 71 (207)
T 3bdi_A 5 QEEFIDV--NGTRVFQRKMVTDS---------NRRSIALFHGYSFTS--MDWDKADLFNNYSKIGYNVYAPDYPGFGRSA 71 (207)
T ss_dssp EEEEEEE--TTEEEEEEEECCTT---------CCEEEEEECCTTCCG--GGGGGGTHHHHHHTTTEEEEEECCTTSTTSC
T ss_pred eeEEEee--CCcEEEEEEEeccC---------CCCeEEEECCCCCCc--cccchHHHHHHHHhCCCeEEEEcCCcccccC
Confidence 4444444 79999999998854 358999999985443 45666 88899999999999999976543
Q ss_pred --chhHHHhhccCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh
Q 004816 536 --GREFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 611 (729)
Q Consensus 536 --g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~ 611 (729)
... . ... +.+++.+.+..++++. +.++++++|||+||.+++.++. +|++++++++.+|..... +
T Consensus 72 ~~~~~-----~---~~~~~~~~~~~~~~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~-~- 139 (207)
T 3bdi_A 72 SSEKY-----G---IDRGDLKHAAEFIRDYLKAN--GVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVES-L- 139 (207)
T ss_dssp CCTTT-----C---CTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCGG-G-
T ss_pred cccCC-----C---CCcchHHHHHHHHHHHHHHc--CCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccccc-h-
Confidence 211 1 112 4677777777776653 4579999999999999999988 899999999999873221 0
Q ss_pred hhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC
Q 004816 612 AETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691 (729)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 691 (729)
...+.++++|+|+++|++|..++++.+.++.+.+. +++++++++++|.+.
T Consensus 140 --------------------------~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~ 189 (207)
T 3bdi_A 140 --------------------------KGDMKKIRQKTLLVWGSKDHVVPIALSKEYASIIS----GSRLEIVEGSGHPVY 189 (207)
T ss_dssp --------------------------HHHHTTCCSCEEEEEETTCTTTTHHHHHHHHHHST----TCEEEEETTCCSCHH
T ss_pred --------------------------hHHHhhccCCEEEEEECCCCccchHHHHHHHHhcC----CceEEEeCCCCCCcc
Confidence 12345678999999999999999999988888773 568999999999854
Q ss_pred CcccHHHHHHHHHHHHHH
Q 004816 692 KAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 692 ~~~~~~~~~~~~~~fl~~ 709 (729)
. +...+..+.+.+|+++
T Consensus 190 ~-~~~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 190 I-EKPEEFVRITVDFLRN 206 (207)
T ss_dssp H-HSHHHHHHHHHHHHHT
T ss_pred c-cCHHHHHHHHHHHHhh
Confidence 3 3355677778888764
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=202.88 Aligned_cols=251 Identities=16% Similarity=0.129 Sum_probs=176.2
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc-ccchhhh-HHHhhCCcEEEEecCCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSI-QYWTSRGWAFVDVNYGGSTG 534 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~-~~la~~G~~v~~~d~rGs~g 534 (729)
..+.+.++.. ||..|.+.++.|.+ .++.|+||+.||....... ..|...+ ++|+++||+|+.+|+||+++
T Consensus 8 ~~~~v~i~~~-DG~~L~~~~~~P~~-------~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~ 79 (587)
T 3i2k_A 8 VASNVMVPMR-DGVRLAVDLYRPDA-------DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFA 79 (587)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEECC-------SSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTT
T ss_pred EEEEEEEECC-CCCEEEEEEEECCC-------CCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCC
Confidence 3467889998 99999999999975 3568999999876332211 1232234 88999999999999999988
Q ss_pred CchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc-cChhHHh-
Q 004816 535 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV-ADLSMLR- 611 (729)
Q Consensus 535 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~-~d~~~~~- 611 (729)
++..+.. + ..+.+|+.++++||.++...+ .+|+++|+||||++++.++. +++.++++|+.++. .|+..-.
T Consensus 80 S~g~~~~-----~-~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~ 152 (587)
T 3i2k_A 80 SEGEFVP-----H-VDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWY 152 (587)
T ss_dssp CCSCCCT-----T-TTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCS
T ss_pred CCCcccc-----c-cchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCccccccccee
Confidence 7755432 1 246899999999999887665 79999999999999999998 79999999999988 6542100
Q ss_pred -hhc--c-----hhh--------------------------------hhhh------------------hhh-cC---Ch
Q 004816 612 -AET--H-----KFE--------------------------------SRYI------------------DNL-VG---SE 629 (729)
Q Consensus 612 -~~~--~-----~~~--------------------------------~~~~------------------~~~-~~---~~ 629 (729)
... . .+. ..++ ... +. ..
T Consensus 153 ~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (587)
T 3i2k_A 153 GPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDND 232 (587)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCCSCC
T ss_pred ecCCccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCCCCC
Confidence 000 0 000 0000 000 11 12
Q ss_pred hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC---------ccc---HH
Q 004816 630 KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK---------AEN---IK 697 (729)
Q Consensus 630 ~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~---------~~~---~~ 697 (729)
+.|...++...+++|++|+|+++|..|..+ ..+.+++++|+..++ ..+++-|. .|.... +.. ..
T Consensus 233 ~yw~~~s~~~~l~~I~vPvL~v~Gw~D~~~--~~~~~~~~~l~~~~~-~~L~iGPw-~H~~~~~~~g~~~~g~~~~~~~~ 308 (587)
T 3i2k_A 233 ESWQSISLFERLGGLATPALITAGWYDGFV--GESLRTFVAVKDNAD-ARLVVGPW-SHSNLTGRNADRKFGIAATYPIQ 308 (587)
T ss_dssp HHHHTTCCHHHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTTTSC-EEEEEEEE-ETTBCSSEETTEECCGGGSCCHH
T ss_pred hHHhcCChhhhhccCCCCEEEEccCCCccc--hHHHHHHHHHhhcCC-CEEEECCc-cccCccccCCCcccCCccccccc
Confidence 335566777789999999999999999764 568889999987764 36666664 364211 111 12
Q ss_pred HHHHHHHHHHHHHhCCCCCC-CCCCceecc
Q 004816 698 FTLEQQMVFFARVVGHFDVA-DEIIPIKID 726 (729)
Q Consensus 698 ~~~~~~~~fl~~~l~~~~~~-~~~~~~~~~ 726 (729)
+..+.+++||+++|++.+.. ...|++.+.
T Consensus 309 ~~~~~~~~wFD~~Lkg~~ng~~~~p~v~~~ 338 (587)
T 3i2k_A 309 EATTMHKAFFDRHLRGETDALAGVPKVRLF 338 (587)
T ss_dssp HHHHHHHHHHHHHHSCCTTTTTTCCSEEEE
T ss_pred hhhHHHHHHHHHHhcCCCCCCCCCCCEEEE
Confidence 44488999999999977654 456777654
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=177.10 Aligned_cols=203 Identities=16% Similarity=0.143 Sum_probs=145.5
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhh-------ccCCCcccHHHHHHHHHHHH
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL-------LGRWGIVDVNDCCSCATFLV 563 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~-------~~~~~~~~~~D~~~~~~~l~ 563 (729)
+.|+||++||.+.. ...|...+..|+++||.|+++|+||.+.......... ....-....+|+.++++++.
T Consensus 23 ~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 100 (238)
T 1ufo_A 23 PKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAE 100 (238)
T ss_dssp CCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCCccc--chHHHHHHHHHHhCCCEEEEecCCCCccCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46899999998543 3345667788889999999999998665432110000 00000123678888999988
Q ss_pred hCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccC
Q 004816 564 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 642 (729)
Q Consensus 564 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 642 (729)
+.+. ++++++|||+||.+++.++. +|+.++++++.++....... ........ ....+...++...+.
T Consensus 101 ~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~ 168 (238)
T 1ufo_A 101 RRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLP-QGQVVEDP--------GVLALYQAPPATRGE 168 (238)
T ss_dssp HHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCCC-TTCCCCCH--------HHHHHHHSCGGGCGG
T ss_pred hccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccchhh-hhhccCCc--------ccchhhcCChhhhhh
Confidence 7643 79999999999999999998 88888888877664322110 00000000 023344456666677
Q ss_pred CC-CCCEEEEEeCCCCCCChHHHHHHHHHHH-hCCC-CEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 643 KF-SCPIILFQGLEDKVVPPDQARKIYKALK-ENGL-PVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 643 ~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~-~~g~-~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
++ ++|+|+++|++|..+|++.+.++++.++ ..|. +++++++++++|.+.. +..+.+.+|+.++++
T Consensus 169 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~-----~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 169 AYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTP-----LMARVGLAFLEHWLE 236 (238)
T ss_dssp GGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCCH-----HHHHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCCcccHH-----HHHHHHHHHHHHHHh
Confidence 77 8999999999999999999999999999 8887 8999999999998642 456778899998875
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.9e-19 Score=188.03 Aligned_cols=246 Identities=16% Similarity=0.108 Sum_probs=157.6
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc----chhhhHHHhhCCcEEEEecCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI----LNLSIQYWTSRGWAFVDVNYGGS 532 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~----~~~~~~~la~~G~~v~~~d~rGs 532 (729)
..+...+.+. ||..+.++.+.|.... ..+.++.|+||++||.+++...+. +..++..|+++||.|+++|+||.
T Consensus 26 ~~~~~~~~~~-dG~~l~~~~~~~~~~~--~~~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~ 102 (377)
T 1k8q_A 26 PAEEYEVVTE-DGYILGIDRIPYGRKN--SENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp CCEEEEEECT-TSEEEEEEEECSCSSC--CTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred CceEEEeEcC-CCCEEEEEEecCCCCC--ccccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCC
Confidence 4577888887 9999999888764310 000135689999999865543322 22345588999999999999987
Q ss_pred CCCchhHHH-hhcc---CCCccc-HH-HHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC---cceEEEEec
Q 004816 533 TGYGREFRE-RLLG---RWGIVD-VN-DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD---TFKAGASLY 602 (729)
Q Consensus 533 ~g~g~~~~~-~~~~---~~~~~~-~~-D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~---~~~a~v~~~ 602 (729)
|.+...... .... .+...+ .+ |+.++++++++.. +.++++++|||+||.+++.++. +|+ +++++|+.+
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~ 180 (377)
T 1k8q_A 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALA 180 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEES
T ss_pred CCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHhc--CcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeC
Confidence 654331000 0000 111111 34 8888999887763 3478999999999999999988 888 899999999
Q ss_pred cccChhHHhh---------------hc------c--hhhhhh-----------------h----------------hhhc
Q 004816 603 GVADLSMLRA---------------ET------H--KFESRY-----------------I----------------DNLV 626 (729)
Q Consensus 603 ~~~d~~~~~~---------------~~------~--~~~~~~-----------------~----------------~~~~ 626 (729)
|......... .. . ...... . ....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (377)
T 1k8q_A 181 PVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYL 260 (377)
T ss_dssp CCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHH
T ss_pred CchhcccchhHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCCcccCCHHHHHHHh
Confidence 8653211000 00 0 000000 0 0000
Q ss_pred ----CC-----------------------------hhhhhhc-CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHH
Q 004816 627 ----GS-----------------------------EKDYYEK-SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 672 (729)
Q Consensus 627 ----~~-----------------------------~~~~~~~-sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~ 672 (729)
.. ...|... .+...+.++++|+|+++|++|.++|++.+.++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~ 340 (377)
T 1k8q_A 261 SHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLP 340 (377)
T ss_dssp TTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCT
T ss_pred ccCCCCccHHHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCcccCHHHHHHHHHhCc
Confidence 00 0000000 1223477889999999999999999999888887765
Q ss_pred hCCCCEEEEEECCCCcccCC--cccHHHHHHHHHHHHHHH
Q 004816 673 ENGLPVALVEYEGEQHGFRK--AENIKFTLEQQMVFFARV 710 (729)
Q Consensus 673 ~~g~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~ 710 (729)
.. .++++++++||.... .+...++.+.+.+||+++
T Consensus 341 ~~---~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 377 (377)
T 1k8q_A 341 NL---IYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp TE---EEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred Cc---ccEEecCCCCceEEEecCCcHHHHHHHHHHHhccC
Confidence 32 148999999997542 456778889999999753
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=179.01 Aligned_cols=239 Identities=13% Similarity=0.143 Sum_probs=161.2
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh---hhHHHhhCCcEEEEecCCCC
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGS 532 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---~~~~la~~G~~v~~~d~rGs 532 (729)
.+.+.+++.+...|..+.++ +.|.+ .|+||++||++.......|.. ..+.+++.||.|+.+|++++
T Consensus 9 ~~~~~~~~~S~~~~~~~~~~-~~P~~----------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~ 77 (280)
T 1r88_A 9 APYENLMVPSPSMGRDIPVA-FLAGG----------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAY 77 (280)
T ss_dssp CCCEEEEEEETTTTEEEEEE-EECCS----------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTT
T ss_pred CCEEEEEEECcccCCcceEE-EeCCC----------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCC
Confidence 35678888876468888888 66743 279999999853222233322 45677888999999999875
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 611 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~ 611 (729)
+++.. +.......+.....+ .++.++.++..+++++++|+|+||||++|+.++. +|++|+++++.+|..++....
T Consensus 78 ~~~~~-~~~~~~~~~~~~~~~---~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~ 153 (280)
T 1r88_A 78 SMYTN-WEQDGSKQWDTFLSA---ELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTT 153 (280)
T ss_dssp STTSB-CSSCTTCBHHHHHHT---HHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHH
T ss_pred CccCC-CCCCCCCcHHHHHHH---HHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCcc
Confidence 54321 110001111111122 3344444434567789999999999999999988 999999999999988764321
Q ss_pred hhc--c----hhhhhhhhhhcCCh--hhhhhcCcccccCCC---CCCEEEEE----eCCCCC-------CChHHHHHHHH
Q 004816 612 AET--H----KFESRYIDNLVGSE--KDYYEKSPINFVDKF---SCPIILFQ----GLEDKV-------VPPDQARKIYK 669 (729)
Q Consensus 612 ~~~--~----~~~~~~~~~~~~~~--~~~~~~sp~~~~~~i---~~PvL~i~----G~~D~~-------vp~~~~~~~~~ 669 (729)
... . ..........++.+ ..+...+|+.+++++ ++|+++.| |++|.. +++++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~~~~ 233 (280)
T 1r88_A 154 TNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYN 233 (280)
T ss_dssp HHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHhhhccccchhhhcCCCchhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHHHHHH
Confidence 000 0 00000011122222 356667887766655 57999999 999983 58899999999
Q ss_pred HHHhCC-CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 670 ALKENG-LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 670 ~l~~~g-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+|+++| +++++.++++++|.+ ..+...+...+.|+.+-|+
T Consensus 234 ~L~~~g~~~~~~~~~~~g~H~~---~~w~~~l~~~l~~~~~~~~ 274 (280)
T 1r88_A 234 QYRSVGGHNGHFDFPASGDNGW---GSWAPQLGAMSGDIVGAIR 274 (280)
T ss_dssp HHHHTTCCSEEEECCSSCCSSH---HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCcceEEEecCCCCcCh---hHHHHHHHHHHHHHHHHHh
Confidence 999999 999999998889976 3456677777888887775
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-18 Score=180.87 Aligned_cols=300 Identities=10% Similarity=0.051 Sum_probs=194.4
Q ss_pred CCcCCHHHHhccCCccCceEEcCCCcEEEEeecCC---CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEE
Q 004816 76 KSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI 152 (729)
Q Consensus 76 ~~~lt~e~i~~~~~~~~~~~~~pg~~~~~~~~~~~---~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (729)
++++++|+++.. ..+.+|+++ |++++|+....+ +.....||.++..+ ++.+.+ . ......|++
T Consensus 3 ~~~~~~~~l~~~-~~~~~~~~d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l---~--------~~~~~~~Sp 68 (347)
T 2gop_A 3 SIEWNEKTFAKF-AYLSDPRTK-GELVAYVLTKANLKDNKYENTIVIENLKN-NARRFI---E--------NATMPRISP 68 (347)
T ss_dssp -------CCCCS-CEEEEEEEE-TTEEEEEEEEEETTTTEEEEEEEEEETTT-CCEEEE---E--------SCEEEEECT
T ss_pred cccCCcccceee-EEcccceEC-CcEEEEEEeecCcccCCccceEEEEeCCC-CceEEc---c--------cCCCeEECC
Confidence 356788888877 677888885 999999865432 22356788877663 344444 1 111234666
Q ss_pred ECCEEEEEECCC--C--cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC-------------
Q 004816 153 FGDTVIFSNYKD--Q--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD------------- 215 (729)
Q Consensus 153 ~~~~i~~~~~~~--~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~------------- 215 (729)
+++.|+|..... + +||++++++ ++.++++.. .. +..+.|||||++|+|...+....
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~--g~~~~l~~~----~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLET--LSSKKILEA----KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTT--TEEEEEEEE----SE-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCC--CceEEEEcC----CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 677898887543 2 699999998 888888865 24 78899999999999987531100
Q ss_pred -----CCCcceEEEEEEcCCCce-EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCC--CCCcEEEEEEecCCCCeeeeE
Q 004816 216 -----ALNSTTEIVAIALNGQNI-QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP--WDKAELWVGYISENGDVYKRV 287 (729)
Q Consensus 216 -----~~~~~~~l~~~dl~~g~~-~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~--~~~~~l~~~d~~~~g~~~~~~ 287 (729)
......+||++++++++. ++|+. . ....+.||||| |+|+.......+ ....+||++| . ++.. .
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d-~--~~~~--~ 212 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE-D--GKEE--K 212 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE-T--TEEE--E
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC-C--CceE--E
Confidence 001146899999999988 78876 3 66788999999 777764332211 1145799888 3 5542 2
Q ss_pred EecCCCCCccccccCceeCCCCc-EEEEEecCC----CceEEEEEEcCCCeEEEeecc-CccccC-CcccccCcceeeee
Q 004816 288 CVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN----GFWNLHKWIESNNEVLAIYSL-DAEFSR-PLWVFGINSYEIIQ 360 (729)
Q Consensus 288 ~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~----g~~~l~~~d~~~g~~~~l~~~-~~~~~~-~~w~~~~~~~~~l~ 360 (729)
+... . . ...+||||+ |+|.+.... ....|+++| +++.+.++.. +..+.. +.|+
T Consensus 213 l~~~-~----~---~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s---------- 272 (347)
T 2gop_A 213 MFEK-V----S---FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD---------- 272 (347)
T ss_dssp EEEE-E----S---EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET----------
T ss_pred eccC-c----c---eeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc----------
Confidence 3222 1 1 123499999 888876521 246899998 6777777643 222222 3332
Q ss_pred ecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 361 SHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 361 ~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
+ + +++.+..++..+|| ++ + ++.+.+..+...+..+.... .+++..++...+.+||.++ ++.++||
T Consensus 273 ---d-g-~~~~~~~~~~~~l~-~~-~-g~~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~---g~~~~lt 337 (347)
T 2gop_A 273 ---G-K-VYFTLFEEGSVNLY-IW-D-GEIKPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD---GEEKQLT 337 (347)
T ss_dssp ---T-E-EEEEEEETTEEEEE-EE-S-SSEEEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES---SSEEECC
T ss_pred ---C-c-EEEEEecCCcEEEE-Ec-C-CceEEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC---CcEEEec
Confidence 3 3 88888899999999 98 4 56677766666677663333 6788888888888999987 5555544
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-18 Score=196.24 Aligned_cols=308 Identities=11% Similarity=0.067 Sum_probs=196.2
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCC--cccCCCC-C-------cccccccccCCceEEEEC-CEE
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP--SDITPKE-Y-------AVRTTAQEYGGGAFRIFG-DTV 157 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~--~~l~~~~-~-------~~~~~~~~~~~~~~~~~~-~~i 157 (729)
+++.++.|+ |+.+++... ++ . + ++.. +|+. +.++... . ....+........+++++ +.+
T Consensus 26 ~~~~~~~w~-g~~~~~~~~----~~-i-~--~d~~-tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~ 95 (706)
T 2z3z_A 26 EYVVGLQWM-GDNYVFIEG----DD-L-V--FNKA-NGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLV 95 (706)
T ss_dssp --CTTCEEE-TTEEEEEET----TE-E-E--EEC--------CEEEEHHHHHTTC-----------CCCEEEEETTTTEE
T ss_pred ccCCCCcCc-CCeEEEEeC----Cc-E-E--EECC-CCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeE
Confidence 356778999 887776542 23 3 4 4444 2344 4443211 0 000111123445555654 467
Q ss_pred EEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-----Cc
Q 004816 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-----QN 232 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-----g~ 232 (729)
++.. ++.|+++|+.+ ++.++++.. ......++|||||++|+|+.+ .+||++++++ ++
T Consensus 96 ~~~~--~~~i~~~d~~~--~~~~~l~~~----~~~~~~~~~SpdG~~la~~~~----------~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 96 VLFT--QGGLVGFDMLA--RKVTYLFDT----NEETASLDFSPVGDRVAYVRN----------HNLYIARGGKLGEGMSR 157 (706)
T ss_dssp EEEE--TTEEEEEETTT--TEEEEEECC----TTCCTTCEECTTSSEEEEEET----------TEEEEEECBCTTSCCCC
T ss_pred EEEE--CCEEEEEECCC--CceEEccCC----cccccCCcCCCCCCEEEEEEC----------CeEEEEecCcccccCCC
Confidence 7774 47899999998 777777765 234578999999999999743 4699999999 88
Q ss_pred eEEeeeCCCe---------------eeeeeeCCCCCeEEEEEecCCCC-------------------------CCCCcEE
Q 004816 233 IQVLVSGSDF---------------YAFPRMDPRGERMAWIEWHHPNM-------------------------PWDKAEL 272 (729)
Q Consensus 233 ~~~lt~~~~~---------------~~~~~~SPDG~~la~~~~~~~~~-------------------------~~~~~~l 272 (729)
.++++..... ...++|||||++|+|.+.+.... .....+|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 8888754332 36789999999999998553321 1134679
Q ss_pred EEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec-CCCceEEEEEEcCCC-eEEEeeccCccccCCcc
Q 004816 273 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR-KNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLW 349 (729)
Q Consensus 273 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~-~~g~~~l~~~d~~~g-~~~~l~~~~~~~~~~~w 349 (729)
+++|++ +++...+......+ ..+..+.|||||+ |++.+.. ......|+++|++++ +.+.+..+. ...|
T Consensus 238 ~~~d~~-~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~----~~~~ 308 (706)
T 2z3z_A 238 GIYHLA-TGKTVYLQTGEPKE----KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET----DKHY 308 (706)
T ss_dssp EEEETT-TTEEEECCCCSCTT----CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE----CSSC
T ss_pred EEEECC-CCceEeeccCCCCc----eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc----CCCe
Confidence 999998 66642221111222 4567899999999 7776544 234568999999998 666665322 1222
Q ss_pred cccCcceeeeeecCC--CCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEE-e-eeeCCEEEEEEeCCCCC--ceE
Q 004816 350 VFGINSYEIIQSHGE--KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN-I-TLGNDCLFVEGASGVEP--SSV 423 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~--~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~-~-~~~~~~~~~~~~~~~~~--~~l 423 (729)
......+.|. . ++.+++.++++|..+||.++.+++..+.|+.+.+.+.. + ..+++..+++.++.+.+ ..|
T Consensus 309 ~~~~~~~~~s----p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 309 VEPLHPLTFL----PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp CCCCSCCEEC----TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred ECccCCceee----cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 2111233443 3 56678888888999999999888888999888777765 3 33344444444455543 469
Q ss_pred EEEEcCCCcceeee
Q 004816 424 AKVTLDDHKLKAVD 437 (729)
Q Consensus 424 y~~d~~~~~~~~lt 437 (729)
|.+++++++.++|+
T Consensus 385 ~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 385 YCIDIKGGKTKDLT 398 (706)
T ss_dssp EEEETTCCCCEESC
T ss_pred EEEEcCCCCceecc
Confidence 99999888877665
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-19 Score=184.97 Aligned_cols=251 Identities=17% Similarity=0.152 Sum_probs=161.9
Q ss_pred CCCCcEEEEeecc-CCC--eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc-ccc-----hhhhHHHh-hCCcE
Q 004816 454 YFSLPELIEFPTE-VPG--QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GIL-----NLSIQYWT-SRGWA 523 (729)
Q Consensus 454 ~~~~~~~~~~~~~-~dG--~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~-~~~-----~~~~~~la-~~G~~ 523 (729)
...+..++.|.+. .+| ..+.++++.|.+ +.++.|+|++.||....... +.+ ...+..|+ ++||+
T Consensus 39 ~~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~------~~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~ 112 (377)
T 4ezi_A 39 YDLQLYKINYKTQSPDGNLTIASGLVAMPIH------PVGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYM 112 (377)
T ss_dssp CCEEEEEEEEEEECTTSCEEEEEEEEEEESS------CSSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCE
T ss_pred CCcEEEEEEEEEECCCCCEEEEEEEEEECCC------CCCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcE
Confidence 3345677888776 134 458899999976 23568999999998632211 111 12456678 99999
Q ss_pred EEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh-CC----C-cce
Q 004816 524 FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-FR----D-TFK 596 (729)
Q Consensus 524 v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~~----~-~~~ 596 (729)
|+++||||.|+++..............++.|...++..+... +..+.+||+++|||+||+++++++. +| + .+.
T Consensus 113 Vv~~D~rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~ 192 (377)
T 4ezi_A 113 TVMPDYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVS 192 (377)
T ss_dssp EEEECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCC
T ss_pred EEEeCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceE
Confidence 999999998876531110000000112244555544444443 3335689999999999999999886 33 3 689
Q ss_pred EEEEeccccChhHHhhhcch-------hhhhh--------------hhhhcC--------------------------Ch
Q 004816 597 AGASLYGVADLSMLRAETHK-------FESRY--------------IDNLVG--------------------------SE 629 (729)
Q Consensus 597 a~v~~~~~~d~~~~~~~~~~-------~~~~~--------------~~~~~~--------------------------~~ 629 (729)
++++.+++.|+......... ....| +...+. +.
T Consensus 193 g~~~~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (377)
T 4ezi_A 193 AVAPGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDP 272 (377)
T ss_dssp EEEEESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSG
T ss_pred EEEecCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCCH
Confidence 99999998887643221110 00000 000000 00
Q ss_pred -----hhhhh-----cCc-cc--------ccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC--CCc
Q 004816 630 -----KDYYE-----KSP-IN--------FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG--EQH 688 (729)
Q Consensus 630 -----~~~~~-----~sp-~~--------~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~gH 688 (729)
..+.. .+| +. .-.++++|+|++||++|.+||++++.+++++++++|. ++++++++ .+|
T Consensus 273 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp~~~~~~l~~~l~~~G~-v~~~~~~~~~~~H 351 (377)
T 4ezi_A 273 LLIFQPKFSNGIISKTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKYSD-FVWIKSVSDALDH 351 (377)
T ss_dssp GGGBCHHHHHHHHTTCSTTHHHHHHHHCCCCSCCSSCEEEEECTTCSSSCHHHHHHHHHHHHTTCS-CEEEEESCSSCCT
T ss_pred HHHhchhhhhhcccccchHHHHHHHHhcccCCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhcCC-EEEEEcCCCCCCc
Confidence 00000 112 10 0125678999999999999999999999999999999 99999999 899
Q ss_pred ccCCcccHHHHHHHHHHHHHHHhCCCC
Q 004816 689 GFRKAENIKFTLEQQMVFFARVVGHFD 715 (729)
Q Consensus 689 ~~~~~~~~~~~~~~~~~fl~~~l~~~~ 715 (729)
... .......+++||+++++.+.
T Consensus 352 ~~~----~~~~~~~~~~wl~~~~~~~~ 374 (377)
T 4ezi_A 352 VQA----HPFVLKEQVDFFKQFERQEA 374 (377)
T ss_dssp TTT----HHHHHHHHHHHHHHHHTSSC
T ss_pred cCh----HHHHHHHHHHHHHHhhcchh
Confidence 753 34677889999999998443
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-19 Score=165.88 Aligned_cols=173 Identities=10% Similarity=0.076 Sum_probs=130.3
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
++.|+||++||...+...+.+....+.|+++||.|+.+|+||.+.... . .......+++..+++++.+.. +
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~---~----~~~~~~~~~~~~~~~~~~~~~--~ 72 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRD---L----GQLGDVRGRLQRLLEIARAAT--E 72 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCCHHHHTCGG---G----CTTCCHHHHHHHHHHHHHHHH--T
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCC---C----CCCCCHHHHHHHHHHHHHhcC--C
Confidence 456899999998655444445578889999999999999997543221 1 011112455566677776653 3
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCE
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPI 648 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~Pv 648 (729)
.++++++|||+||.+++.++. +| ++++|+.+|..+...+. ...++++|+
T Consensus 73 ~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~~----------------------------~~~~~~~P~ 122 (176)
T 2qjw_A 73 KGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPLP----------------------------ALDAAAVPI 122 (176)
T ss_dssp TSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTBC----------------------------CCCCCSSCE
T ss_pred CCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCccccC----------------------------cccccCCCE
Confidence 579999999999999999998 66 99999999876643110 045678999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
|+++|++|..+|++++.++++.+ +++++++ +++|.+. +...+..+.+.+|+++
T Consensus 123 l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~-~~~H~~~--~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 123 SIVHAWHDELIPAADVIAWAQAR-----SARLLLV-DDGHRLG--AHVQAASRAFAELLQS 175 (176)
T ss_dssp EEEEETTCSSSCHHHHHHHHHHH-----TCEEEEE-SSCTTCT--TCHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCccCHHHHHHHHHhC-----CceEEEe-CCCcccc--ccHHHHHHHHHHHHHh
Confidence 99999999999999999999887 3488888 8999873 5667788888888864
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=168.01 Aligned_cols=190 Identities=17% Similarity=0.152 Sum_probs=136.7
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhh--CCcEEEEecCCCC-----CCCc-hhHHHh-hcc---CCCc----ccH
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGS-----TGYG-REFRER-LLG---RWGI----VDV 552 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~--~G~~v~~~d~rGs-----~g~g-~~~~~~-~~~---~~~~----~~~ 552 (729)
.++.|+||++||.+.. ...|...++.|++ +||.|+++|++|. .|++ ..|.+. ..+ .... ...
T Consensus 11 ~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~~ 88 (218)
T 1auo_A 11 KPADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSA 88 (218)
T ss_dssp SCCSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHH
T ss_pred CCCCcEEEEEecCCCC--hhhHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcccccchHHHHHHH
Confidence 4567999999998533 3456778888988 9999999987641 1100 000000 000 0000 114
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChh
Q 004816 553 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEK 630 (729)
Q Consensus 553 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 630 (729)
+|+..+++++.+ ..++.++++++|||+||++++.++. +|++++++|+.+|...... +. .
T Consensus 89 ~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~-------~~-----------~ 149 (218)
T 1auo_A 89 KMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFG-------DE-----------L 149 (218)
T ss_dssp HHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCC-------TT-----------C
T ss_pred HHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCch-------hh-----------h
Confidence 556666666665 3467889999999999999999876 7889999999999866410 00 0
Q ss_pred hhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 631 DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 631 ~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
. .....+++|+|+++|++|.++|++.++++++.++..|.++++++++ ++|.+.. +..+.+.+||.++
T Consensus 150 ~-------~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~~-----~~~~~~~~~l~~~ 216 (218)
T 1auo_A 150 E-------LSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVLP-----QEIHDIGAWLAAR 216 (218)
T ss_dssp C-------CCHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCCH-----HHHHHHHHHHHHH
T ss_pred h-------hhhcccCCCEEEEEeCCCceecHHHHHHHHHHHHhCCCceEEEEec-CCCccCH-----HHHHHHHHHHHHH
Confidence 0 0113457899999999999999999999999999999899999999 9998642 4567889999988
Q ss_pred hC
Q 004816 711 VG 712 (729)
Q Consensus 711 l~ 712 (729)
|+
T Consensus 217 l~ 218 (218)
T 1auo_A 217 LG 218 (218)
T ss_dssp HC
T ss_pred hC
Confidence 74
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=171.40 Aligned_cols=194 Identities=15% Similarity=0.146 Sum_probs=135.1
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhC-----CcEEEEecCCCC------CCCchhHHHhh-cc---CCCcccHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-----GWAFVDVNYGGS------TGYGREFRERL-LG---RWGIVDVN 553 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~-----G~~v~~~d~rGs------~g~g~~~~~~~-~~---~~~~~~~~ 553 (729)
.++.|+||++||.++. ...|..+...|+.+ ||.|+.+|.++. ++.+..|.... .. ......++
T Consensus 20 ~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 97 (239)
T 3u0v_A 20 GRHSASLIFLHGSGDS--GQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESID 97 (239)
T ss_dssp SCCCEEEEEECCTTCC--HHHHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHHH
T ss_pred CCCCcEEEEEecCCCc--hhhHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhHH
Confidence 3467999999997433 33455566676654 799999997642 11112221100 00 00011233
Q ss_pred HHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCCh
Q 004816 554 DCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSE 629 (729)
Q Consensus 554 D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 629 (729)
++...+..+++. ..++.++++|+|||+||++++.++. +|++++++|+.+|..+.......
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~---------------- 161 (239)
T 3u0v_A 98 VMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASAVYQ---------------- 161 (239)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCHHHH----------------
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhHHHH----------------
Confidence 333333333322 3468899999999999999999988 89999999999998764322110
Q ss_pred hhhhhcCcccccCCCCCC-EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 630 KDYYEKSPINFVDKFSCP-IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 630 ~~~~~~sp~~~~~~i~~P-vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.+ ......+| +|++||++|.++|+++++++++.|++.+.+++++++++++|.+. .+..+.+.+||.
T Consensus 162 -~~-------~~~~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~-----~~~~~~~~~~l~ 228 (239)
T 3u0v_A 162 -AL-------QKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELS-----KTELDILKLWIL 228 (239)
T ss_dssp -HH-------HHCCSCCCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHH
T ss_pred -HH-------HhhccCCCCEEEEeeCCCCccCHHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC-----HHHHHHHHHHHH
Confidence 00 01233456 99999999999999999999999999999999999999999876 466788999999
Q ss_pred HHhCC
Q 004816 709 RVVGH 713 (729)
Q Consensus 709 ~~l~~ 713 (729)
+++..
T Consensus 229 ~~l~~ 233 (239)
T 3u0v_A 229 TKLPG 233 (239)
T ss_dssp HHCC-
T ss_pred HhCCC
Confidence 99873
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=193.25 Aligned_cols=310 Identities=13% Similarity=0.117 Sum_probs=196.9
Q ss_pred cCceEEcC-CCcEEEEeecCCCC---CceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCc
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEA---GRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~---~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 166 (729)
+.++.||| |+.+++........ ....++.++..+ ++.+.+.... ..... .....|+++++.|+|... ++
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~-~~~~~---~~~~~~SPdG~~la~~~~--~~ 135 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-GDPQSLDPPE-VSNAK---LQYAGWGPKGQQLIFIFE--NN 135 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-CCCEECCCTT-CCSCC---CSBCCBCSSTTCEEEEET--TE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCC-CceEeccCCc-ccccc---ccccEECCCCCEEEEEEC--Ce
Confidence 67899999 88888875432211 113455555552 3445554322 10000 123467788889999875 68
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCc---------------eeeecceecCCCCEEEEEEeccCCC----------------
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPL---------------VSYADGIFDPRFNRYVTVREDRRQD---------------- 215 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~---------------~~~~~~~~SPdG~~l~~~~~~~~~~---------------- 215 (729)
||++++++ ++.++++....... .++..+.|||||++|+|...+....
T Consensus 136 i~~~~~~~--g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (723)
T 1xfd_A 136 IYYCAHVG--KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV 213 (723)
T ss_dssp EEEESSSS--SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred EEEEECCC--CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence 99999998 78888876421100 0125689999999999987653210
Q ss_pred ---------CCCcceEEEEEEcCCCce-EEeeeC------CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC
Q 004816 216 ---------ALNSTTEIVAIALNGQNI-QVLVSG------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE 279 (729)
Q Consensus 216 ---------~~~~~~~l~~~dl~~g~~-~~lt~~------~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~ 279 (729)
.......|+++|+++++. ++++.. ......+.|||||+.|++..... . ....|+++|++
T Consensus 214 ~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~---~~~~i~~~d~~- 288 (723)
T 1xfd_A 214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA-Q---NVSILTLCDAT- 288 (723)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT-S---CEEEEEEEETT-
T ss_pred eeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC-C---CeEEEEEEeCC-
Confidence 001234899999999874 666643 33456789999999887665332 1 35679999998
Q ss_pred CCCeeeeEEecCCCCCcccc-ccCceeCCCCc-EEEE-EecCCC----ceEEEEEE-cCCCe---EEEeeccCccccC-C
Q 004816 280 NGDVYKRVCVAGFDPTIVES-PTEPKWSSKGE-LFFV-TDRKNG----FWNLHKWI-ESNNE---VLAIYSLDAEFSR-P 347 (729)
Q Consensus 280 ~g~~~~~~~~~~~~~~~~~~-~~~~~wspDG~-l~~~-~~~~~g----~~~l~~~d-~~~g~---~~~l~~~~~~~~~-~ 347 (729)
+|+... ++......|... ...+.|||||+ |++. ... .+ ..+||++| ..+++ .+.|+........ +
T Consensus 289 ~g~~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~ 365 (723)
T 1xfd_A 289 TGVCTK--KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP-QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL 365 (723)
T ss_dssp TCCEEE--EEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC-CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE
T ss_pred CCcceE--EEEeccCCEEeccCCCceEcCCCCeEEEEEecc-cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeee
Confidence 777532 222211111111 14789999999 8887 444 55 67899999 56776 6677643333222 3
Q ss_pred cccccCcceeeeeecCCCCEEEEEEEEC--CeEEEEEEECCCC-ceEeeccC---CcceEEe--eeeCCEEEEEEeCCCC
Q 004816 348 LWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGH-SLSLLDIP---FTDIDNI--TLGNDCLFVEGASGVE 419 (729)
Q Consensus 348 ~w~~~~~~~~~l~~~~~~~~l~~~s~~~--g~~~ly~~d~~~g-~~~~lt~~---~~~v~~~--~~~~~~~~~~~~~~~~ 419 (729)
.|++ +++.|++.+.++ +..+||.++.+++ +.+.|+.. ...+..+ +++++.+++..++++.
T Consensus 366 ~~sp------------dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 433 (723)
T 1xfd_A 366 AYDE------------KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGV 433 (723)
T ss_dssp EEET------------TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSS
T ss_pred EEcC------------CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCC
Confidence 4554 888998888776 7789999998775 55667642 3334333 6777888888888887
Q ss_pred CceEEEEEcCC
Q 004816 420 PSSVAKVTLDD 430 (729)
Q Consensus 420 ~~~ly~~d~~~ 430 (729)
|..++. +...
T Consensus 434 p~~~~~-~~~~ 443 (723)
T 1xfd_A 434 PMVTVH-NTTD 443 (723)
T ss_dssp CCEEEE-ETTT
T ss_pred CeEEEE-ECCC
Confidence 765543 4433
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-19 Score=173.51 Aligned_cols=199 Identities=12% Similarity=0.025 Sum_probs=142.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhcc--
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG-- 545 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~-- 545 (729)
++..+.+.++.|.+ ...|+||++||.++. ...|....+.|++ ||.|+++|.++..+.|..|......
T Consensus 14 ~~~~l~~~~~~~~~--------~~~p~vv~lHG~g~~--~~~~~~~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~~~ 82 (223)
T 3b5e_A 14 TDLAFPYRLLGAGK--------ESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTR 82 (223)
T ss_dssp CSSSSCEEEESTTS--------SCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTE
T ss_pred cCCCceEEEeCCCC--------CCCCEEEEEecCCCC--HHHHHHHHHhcCC-CceEEEeCCCCCcCCccccccccCCCc
Confidence 34556655555533 234899999998443 3456667777765 9999999987632222222111000
Q ss_pred -CC--CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhh
Q 004816 546 -RW--GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRY 621 (729)
Q Consensus 546 -~~--~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~ 621 (729)
.. -....+|+.+.++++.++..+|.++++|+|||+||.+++.++. +|++++++|+.+|......
T Consensus 83 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------ 150 (223)
T 3b5e_A 83 FEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH------------ 150 (223)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc------------
Confidence 00 0112567777788877765678899999999999999999987 9999999999998754310
Q ss_pred hhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHH
Q 004816 622 IDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLE 701 (729)
Q Consensus 622 ~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~ 701 (729)
. .....+++|+|++||++|.++|+++++ +++.++++|.++++++++ ++|.+.. +..+
T Consensus 151 -------~---------~~~~~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~~-----~~~~ 207 (223)
T 3b5e_A 151 -------V---------PATDLAGIRTLIIAGAADETYGPFVPA-LVTLLSRHGAEVDARIIP-SGHDIGD-----PDAA 207 (223)
T ss_dssp -------C---------CCCCCTTCEEEEEEETTCTTTGGGHHH-HHHHHHHTTCEEEEEEES-CCSCCCH-----HHHH
T ss_pred -------c---------ccccccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHCCCceEEEEec-CCCCcCH-----HHHH
Confidence 0 122346789999999999999999999 999999999999999999 9998742 3456
Q ss_pred HHHHHHHHHhC
Q 004816 702 QQMVFFARVVG 712 (729)
Q Consensus 702 ~~~~fl~~~l~ 712 (729)
.+.+|+.+.+.
T Consensus 208 ~i~~~l~~~~~ 218 (223)
T 3b5e_A 208 IVRQWLAGPIA 218 (223)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHhhhh
Confidence 78889887554
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-18 Score=167.04 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=138.1
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEe--cCCCCCCCchhHHHhhccCCC----cccHHHHHHHHHHHH
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV--NYGGSTGYGREFRERLLGRWG----IVDVNDCCSCATFLV 563 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~--d~rGs~g~g~~~~~~~~~~~~----~~~~~D~~~~~~~l~ 563 (729)
++.|+||++||.+.. ...|...++.|++ ||.|+++ |++|.+.... +.......+. ..+.+++.+.++++.
T Consensus 36 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~~~d~~g~g~s~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGN--ELDLLPLAEIVDS-EASVLSVRGNVLENGMPRF-FRRLAEGIFDEEDLIFRTKELNEFLDEAA 111 (226)
T ss_dssp TTSCEEEEECCTTCC--TTTTHHHHHHHHT-TSCEEEECCSEEETTEEES-SCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCC--hhHHHHHHHHhcc-CceEEEecCcccCCcchhh-ccccCccCcChhhHHHHHHHHHHHHHHHH
Confidence 457999999998543 3456777788887 9999999 7776543210 0000000011 112456667777777
Q ss_pred hCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccC
Q 004816 564 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 642 (729)
Q Consensus 564 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 642 (729)
++..++.++++++|||+||++++.++. +|++++++|+.+|...... .....
T Consensus 112 ~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~----------------------------~~~~~ 163 (226)
T 2h1i_A 112 KEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG----------------------------MQLAN 163 (226)
T ss_dssp HHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS----------------------------CCCCC
T ss_pred hhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc----------------------------ccccc
Confidence 777778899999999999999999988 8999999999999864321 01123
Q ss_pred CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 643 ~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
.+++|+|+++|++|..+|++.+.++++.+++.+.++++ ++++++|.+. .+..+.+.+|+.++|
T Consensus 164 ~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 164 LAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTM-HWENRGHQLT-----MGEVEKAKEWYDKAF 226 (226)
T ss_dssp CTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEE-EEESSTTSCC-----HHHHHHHHHHHHHHC
T ss_pred ccCCcEEEEeCCCCCcCCHHHHHHHHHHHHhcCCeEEE-EeCCCCCCCC-----HHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999998888888 9999999873 356788899998865
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-19 Score=171.96 Aligned_cols=183 Identities=16% Similarity=0.070 Sum_probs=116.9
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhC--CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~--G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
|+||++||...+........+.+++.++ ||.|+++|++|. |.+ ..+.++.++.+ .+.
T Consensus 3 ptIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~pdl~~~---g~~----------------~~~~l~~~~~~--~~~ 61 (202)
T 4fle_A 3 STLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQLPPY---PAE----------------AAEMLESIVMD--KAG 61 (202)
T ss_dssp CEEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECCCCCSS---HHH----------------HHHHHHHHHHH--HTT
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEeCCCCC---HHH----------------HHHHHHHHHHh--cCC
Confidence 7999999964444333334456677665 599999999864 322 22233333332 245
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhc-CCh-hhhhhcCcccccCCCCCC
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLV-GSE-KDYYEKSPINFVDKFSCP 647 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~sp~~~~~~i~~P 647 (729)
++++|+|+||||++|+.++. ++....+++...+..+.......... ..+..... ... ...........+.++++|
T Consensus 62 ~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 139 (202)
T 4fle_A 62 QSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQ--NPYTGQKYVLESRHIYDLKAMQIEKLESPDL 139 (202)
T ss_dssp SCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEE--CTTTCCEEEECHHHHHHHHTTCCSSCSCGGG
T ss_pred CcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhc--cccccccccchHHHHHHHHhhhhhhhccCce
Confidence 79999999999999999998 88777666555443322111100000 00000000 001 111223444567788899
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+|++||++|.+||++++.++++ ++++++++|++|.+...+ +.++.+.+||+
T Consensus 140 ~LiihG~~D~~Vp~~~s~~l~~-------~~~l~i~~g~~H~~~~~~---~~~~~I~~FL~ 190 (202)
T 4fle_A 140 LWLLQQTGDEVLDYRQAVAYYT-------PCRQTVESGGNHAFVGFD---HYFSPIVTFLG 190 (202)
T ss_dssp EEEEEETTCSSSCHHHHHHHTT-------TSEEEEESSCCTTCTTGG---GGHHHHHHHHT
T ss_pred EEEEEeCCCCCCCHHHHHHHhh-------CCEEEEECCCCcCCCCHH---HHHHHHHHHHh
Confidence 9999999999999999988763 458999999999986543 56778888886
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=177.32 Aligned_cols=225 Identities=17% Similarity=0.147 Sum_probs=149.7
Q ss_pred EEEee---ccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hhhhHHHhhCCcEEEEecCCCCCCC
Q 004816 460 LIEFP---TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGSTGY 535 (729)
Q Consensus 460 ~~~~~---~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la~~G~~v~~~d~rGs~g~ 535 (729)
.+++. .. +|..+.++++.|.+. .++.|+||++||+++.. ..+ ..+.+.++++||.|+++|+|+....
T Consensus 26 ~~~~~~~~~~-~~~~l~~~~~~P~~~------~~~~p~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~v~~~d~~~~~~p 96 (304)
T 3d0k_A 26 AIPYLDDDRN-ADRPFTLNTYRPYGY------TPDRPVVVVQHGVLRNG--ADYRDFWIPAADRHKLLIVAPTFSDEIWP 96 (304)
T ss_dssp EEEECC---C-TTCCEEEEEEECTTC------CTTSCEEEEECCTTCCH--HHHHHHTHHHHHHHTCEEEEEECCTTTSC
T ss_pred eEEecccCCC-CCceEEEEEEeCCCC------CCCCcEEEEeCCCCCCH--HHHHHHHHHHHHHCCcEEEEeCCccccCC
Confidence 45565 44 788999999999762 24579999999986543 233 5567888889999999999964210
Q ss_pred chhHHH-------h-hccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC-cceEEEEec-cc
Q 004816 536 GREFRE-------R-LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD-TFKAGASLY-GV 604 (729)
Q Consensus 536 g~~~~~-------~-~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~-~~~a~v~~~-~~ 604 (729)
+..+.. . .........++|+.++++++.++..+|.++|+|+|||+||++++.++. +|+ +++++|+.. |.
T Consensus 97 ~~~~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~ 176 (304)
T 3d0k_A 97 GVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGW 176 (304)
T ss_dssp HHHHTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSS
T ss_pred CccccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCcc
Confidence 000000 0 000011233578999999999987788999999999999999999988 884 788888665 55
Q ss_pred cChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCC-----------------hHHHHHH
Q 004816 605 ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVP-----------------PDQARKI 667 (729)
Q Consensus 605 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp-----------------~~~~~~~ 667 (729)
.++..... .+...+.. ...+|......+++|+|++||++|.++. .+.+.++
T Consensus 177 ~~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 244 (304)
T 3d0k_A 177 YTLPTFEH-------RFPEGLDG-----VGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARARHY 244 (304)
T ss_dssp CCCSSTTS-------BTTTSSBT-----TTCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSHHHHHHHH
T ss_pred cccCCccc-------cCccccCC-----CCCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccHHHHHHHH
Confidence 54432110 00000000 0113333334456899999999998742 3566777
Q ss_pred HHHHH----hCCCC--EEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 668 YKALK----ENGLP--VALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 668 ~~~l~----~~g~~--~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
++.++ +.|.+ ++++++|++||.+. ...+.+.+||.+..
T Consensus 245 ~~~l~~~a~~~g~~~~~~~~~~pg~gH~~~------~~~~~~~~~~~~~~ 288 (304)
T 3d0k_A 245 YEAGQRAAAQRGLPFGWQLQVVPGIGHDGQ------AMSQVCASLWFDGR 288 (304)
T ss_dssp HHHHHHHHHHHTCCCCCEEEEETTCCSCHH------HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCCCcceEEEEeCCCCCchH------HHHHHHHHHHhhhh
Confidence 77776 66776 99999999999862 45566777776543
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-18 Score=165.39 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=135.7
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhh--CCcEEEEecCCCCC----------------CCchhHHHhhccCCCcc
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGST----------------GYGREFRERLLGRWGIV 550 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~--~G~~v~~~d~rGs~----------------g~g~~~~~~~~~~~~~~ 550 (729)
.++.|+||++||.+.. ...|...++.|++ +||.|+++|++|.+ |+|... .....
T Consensus 21 ~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~------~~~~~ 92 (226)
T 3cn9_A 21 PNADACIIWLHGLGAD--RTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPAR------AIDED 92 (226)
T ss_dssp TTCCEEEEEECCTTCC--GGGGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTT------CBCHH
T ss_pred CCCCCEEEEEecCCCC--hHHHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccc------cccch
Confidence 4567999999998543 3456778888887 99999999887421 222110 00111
Q ss_pred c----HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChhHHhhhcchhhhhhhhh
Q 004816 551 D----VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDN 624 (729)
Q Consensus 551 ~----~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 624 (729)
. .+++..+++++.+ ..++.++++|+|||+||.+++.++. +|++++++|+.+|..+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~------------- 158 (226)
T 3cn9_A 93 QLNASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL------------- 158 (226)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC-------------
T ss_pred hHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh-------------
Confidence 1 4555555565554 3467789999999999999998886 788999999999976543210
Q ss_pred hcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHH
Q 004816 625 LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQM 704 (729)
Q Consensus 625 ~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 704 (729)
.. ....+++|+|+++|++|.++|++.+.++++.++..|.++++++++ ++|.+. .+..+.+.
T Consensus 159 ---------~~----~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~~~i~ 219 (226)
T 3cn9_A 159 ---------AL----DERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYP-MGHEVS-----LEEIHDIG 219 (226)
T ss_dssp ---------CC----CTGGGGCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEES-CCSSCC-----HHHHHHHH
T ss_pred ---------hh----cccccCCCEEEEecCCCCccCHHHHHHHHHHHHHcCCceeEEEec-CCCCcc-----hhhHHHHH
Confidence 00 124567899999999999999999999999999999899999999 999864 24567889
Q ss_pred HHHHHHh
Q 004816 705 VFFARVV 711 (729)
Q Consensus 705 ~fl~~~l 711 (729)
+||.++|
T Consensus 220 ~~l~~~l 226 (226)
T 3cn9_A 220 AWLRKRL 226 (226)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 9998875
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=177.48 Aligned_cols=231 Identities=16% Similarity=0.119 Sum_probs=152.2
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHH-HhhCC---cEEEEec
Q 004816 453 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQY-WTSRG---WAFVDVN 528 (729)
Q Consensus 453 ~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~-la~~G---~~v~~~d 528 (729)
..+...+.+++.+..+|..+.++++.|++.. +.+++|+|+++||++.......+...... .++.| +.|+.+|
T Consensus 13 ~~~~~~~~~~~~s~~~g~~~~~~v~~P~~~~----~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~ 88 (275)
T 2qm0_A 13 IITSNTEQWKMYSKLEGKEYQIHISKPKQPA----PDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVG 88 (275)
T ss_dssp CCCTTEEEEEEECTTTCCEEEEEEECCSSCC----CTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEE
T ss_pred eecCCceEEEEEecCCCCEEEEEEECCCCCC----CCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEEC
Confidence 3455678888888646889999999998733 25678999999997431111111111222 24467 9999999
Q ss_pred CCCCCCCchhHHHhhcc------------------CCC-cccHHHHH--HHHHHHHhCCCCCCCcEEEEEcChHHHHHHH
Q 004816 529 YGGSTGYGREFRERLLG------------------RWG-IVDVNDCC--SCATFLVGSGKADEKRLCITGGSAGGYTTLA 587 (729)
Q Consensus 529 ~rGs~g~g~~~~~~~~~------------------~~~-~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~ 587 (729)
++++..++...+..... ..+ .....+.. .++.++.++..+|+++++|+|||+||++++.
T Consensus 89 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~ 168 (275)
T 2qm0_A 89 YPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALH 168 (275)
T ss_dssp CSCSSSCCHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHH
T ss_pred CCCCCcCcccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHH
Confidence 99865443211111111 011 11222322 3445566666678899999999999999999
Q ss_pred HHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHH
Q 004816 588 ALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARK 666 (729)
Q Consensus 588 ~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~ 666 (729)
++. +|++|+++++.+|...+..... .. ..+.+.... ......+|++++||+.|..++..++++
T Consensus 169 ~~~~~p~~f~~~~~~s~~~~~~~~~~---------~~----~~~~~~~~~---~~~~~~~~~~l~~G~~D~~~~~~~~~~ 232 (275)
T 2qm0_A 169 ILFTNLNAFQNYFISSPSIWWNNKSV---------LE----KEENLIIEL---NNAKFETGVFLTVGSLEREHMVVGANE 232 (275)
T ss_dssp HHHHCGGGCSEEEEESCCTTHHHHGG---------GG----GTTHHHHHH---HTCSSCEEEEEEEETTSCHHHHHHHHH
T ss_pred HHHhCchhhceeEEeCceeeeChHHH---------HH----HHHHHHhhh---cccCCCceEEEEeCCcccchhhHHHHH
Confidence 988 9999999999999875432110 00 011111110 023456799999999999889999999
Q ss_pred HHHHH---HhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 667 IYKAL---KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 667 ~~~~l---~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
++++| +++|++++++++|+++|+.. +...+...++||
T Consensus 233 ~~~~L~~~~~~g~~~~~~~~~g~~H~~~----~~~~l~~~l~~l 272 (275)
T 2qm0_A 233 LSERLLQVNHDKLKFKFYEAEGENHASV----VPTSLSKGLRFI 272 (275)
T ss_dssp HHHHHHHCCCTTEEEEEEEETTCCTTTH----HHHHHHHHHHHH
T ss_pred HHHHHHhcccCCceEEEEECCCCCcccc----HHHHHHHHHHHH
Confidence 99999 56788999999999999642 334445555665
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-18 Score=169.96 Aligned_cols=204 Identities=17% Similarity=0.218 Sum_probs=132.6
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcc-cHHHHHHHHHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~ 571 (729)
|.||++||.+++. ..|...++.|+++||.|+++|+||.|.... . ...+... -.+|+.++++++.+.+ .+
T Consensus 17 ~~vvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~GhG~s~~---~--~~~~~~~~~~~d~~~~~~~l~~~~---~~ 86 (247)
T 1tqh_A 17 RAVLLLHGFTGNS--ADVRMLGRFLESKGYTCHAPIYKGHGVPPE---E--LVHTGPDDWWQDVMNGYEFLKNKG---YE 86 (247)
T ss_dssp CEEEEECCTTCCT--HHHHHHHHHHHHTTCEEEECCCTTSSSCHH---H--HTTCCHHHHHHHHHHHHHHHHHHT---CC
T ss_pred cEEEEECCCCCCh--HHHHHHHHHHHHCCCEEEecccCCCCCCHH---H--hcCCCHHHHHHHHHHHHHHHHHcC---CC
Confidence 6799999975443 446677888989999999999998663321 1 1111111 1456666677776543 36
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh---hHHhhhcchhhhhh--------------hhhhcC----Ch
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---SMLRAETHKFESRY--------------IDNLVG----SE 629 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~---~~~~~~~~~~~~~~--------------~~~~~~----~~ 629 (729)
++.|+||||||.+++.++. +| ++++|+.++.... .........+...+ ...... ..
T Consensus 87 ~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (247)
T 1tqh_A 87 KIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTL 164 (247)
T ss_dssp CEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTH
T ss_pred eEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhhhhcccCCCHHHH
Confidence 8999999999999999998 77 8888876543321 11000000000000 000000 00
Q ss_pred hhhhh--cCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 630 KDYYE--KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 630 ~~~~~--~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
..+.. .+....+.++++|+|+++|++|..+|++.++++++.+.. ..++++++|++||.....+...++.+.+.+|+
T Consensus 165 ~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~~~~~~~~~i~~Fl 242 (247)
T 1tqh_A 165 KALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIES--PVKQIKWYEQSGHVITLDQEKDQLHEDIYAFL 242 (247)
T ss_dssp HHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCCC--SSEEEEEETTCCSSGGGSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEecCCCCCCCcchHHHHHHhcCC--CceEEEEeCCCceeeccCccHHHHHHHHHHHH
Confidence 00000 122345678999999999999999999999988887753 25799999999998655445678889999999
Q ss_pred HHH
Q 004816 708 ARV 710 (729)
Q Consensus 708 ~~~ 710 (729)
++.
T Consensus 243 ~~~ 245 (247)
T 1tqh_A 243 ESL 245 (247)
T ss_dssp HHS
T ss_pred Hhc
Confidence 763
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=177.06 Aligned_cols=256 Identities=10% Similarity=0.070 Sum_probs=176.9
Q ss_pred ceEEEECCEEEEEECCCC--cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
..|+++++.|+|....++ +||++|+++ ++.++++... ......+.|||||++|+|+..+ ..||+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~lt~~~---~~~~~~~~~spdg~~l~~~~~~---------~~l~~ 106 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT--QVATQLTEGR---GDNTFGGFLSPDDDALFYVKDG---------RNLMR 106 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT--CEEEECCCSS---CBCSSSCEECTTSSEEEEEETT---------TEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC--CceEEeeeCC---CCCccceEEcCCCCEEEEEeCC---------CeEEE
Confidence 467788889999987555 799999998 8889998763 2223367899999999999753 47999
Q ss_pred EEcCCCceEEeeeCCCe-eeee--eeCCCCCeEEEEEecCCCC--------------CCCCcEEEEEEecCCCCeeeeEE
Q 004816 226 IALNGQNIQVLVSGSDF-YAFP--RMDPRGERMAWIEWHHPNM--------------PWDKAELWVGYISENGDVYKRVC 288 (729)
Q Consensus 226 ~dl~~g~~~~lt~~~~~-~~~~--~~SPDG~~la~~~~~~~~~--------------~~~~~~l~~~d~~~~g~~~~~~~ 288 (729)
+|+++++.+.+...... .... .++|||+.|+....+.... ......|+++|++ +|+.. .+
T Consensus 107 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~g~~~--~l 183 (388)
T 3pe7_A 107 VDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK-TGEST--VI 183 (388)
T ss_dssp EETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT-TCCEE--EE
T ss_pred EECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC-CCceE--Ee
Confidence 99999998888764432 2222 3599999998765322110 0023679999998 77653 33
Q ss_pred ecCCCCCccccccCceeCC-CCc-EEEEEecCC--CceEEEEEEcCCCeEEEeeccCc--cccCCcccccCcceeeeeec
Q 004816 289 VAGFDPTIVESPTEPKWSS-KGE-LFFVTDRKN--GFWNLHKWIESNNEVLAIYSLDA--EFSRPLWVFGINSYEIIQSH 362 (729)
Q Consensus 289 ~~~~~~~~~~~~~~~~wsp-DG~-l~~~~~~~~--g~~~l~~~d~~~g~~~~l~~~~~--~~~~~~w~~~~~~~~~l~~~ 362 (729)
.... ..+..+.||| ||+ |+|...... +..+||.+|+++++.+.|+.... ....+.|++
T Consensus 184 ~~~~-----~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp----------- 247 (388)
T 3pe7_A 184 LQEN-----QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVP----------- 247 (388)
T ss_dssp EEES-----SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECT-----------
T ss_pred ecCC-----ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECC-----------
Confidence 3322 3446789999 999 888876411 25689999999888888875431 234466665
Q ss_pred CCCCEEEEEEEECCeE--EEEEEECCCCceEeeccCCcc------e--EEeeeeCCEEEEEEeC-----CCCCceEEEEE
Q 004816 363 GEKNLIACSYRQNGRS--YLGILDDFGHSLSLLDIPFTD------I--DNITLGNDCLFVEGAS-----GVEPSSVAKVT 427 (729)
Q Consensus 363 ~~~~~l~~~s~~~g~~--~ly~~d~~~g~~~~lt~~~~~------v--~~~~~~~~~~~~~~~~-----~~~~~~ly~~d 427 (729)
|++.|++.+.+.+.. .||++|+++++.++++..... . ..++++++.+++.... ......||++|
T Consensus 248 -dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 248 -DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp -TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred -CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 888898888877765 499999999998877643220 1 1236677766665432 24566899999
Q ss_pred cCCCcceeee
Q 004816 428 LDDHKLKAVD 437 (729)
Q Consensus 428 ~~~~~~~~lt 437 (729)
+++++.++|+
T Consensus 327 ~~~~~~~~l~ 336 (388)
T 3pe7_A 327 MKNGTQHRVA 336 (388)
T ss_dssp TTTTEEEEEE
T ss_pred ccCCceEEec
Confidence 9999877665
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=175.54 Aligned_cols=232 Identities=19% Similarity=0.211 Sum_probs=148.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-----------cchhhhH---HHhhCCcEEEEecCCC--
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----------ILNLSIQ---YWTSRGWAFVDVNYGG-- 531 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-----------~~~~~~~---~la~~G~~v~~~d~rG-- 531 (729)
+|.++++..+.+.+ ..+.|+||++||.+.+.... .|...+. .|++.||.|+++|+||
T Consensus 29 ~g~~l~y~~~g~~~-------~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~ 101 (366)
T 2pl5_A 29 SPVVIAYETYGTLS-------SSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGC 101 (366)
T ss_dssp SSEEEEEEEEECCC-------TTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCS
T ss_pred cCceeeEEeccCcC-------CCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcc
Confidence 56677766665533 22357899999986554421 3444442 4667899999999998
Q ss_pred CCCCchhHHHhh-----ccCCCcccHHHHHHHHHHHHhCCCCCCCcE-EEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 532 STGYGREFRERL-----LGRWGIVDVNDCCSCATFLVGSGKADEKRL-CITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 532 s~g~g~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
.|..+....... ...+.....+++.+.+..+++. ++.+++ .|+|||+||.+++.++. +|++++++|+.++.
T Consensus 102 ~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 179 (366)
T 2pl5_A 102 KGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAST 179 (366)
T ss_dssp SSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCC
T ss_pred cCCCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccC
Confidence 343332100000 0001123466666666666554 245788 89999999999999998 99999999999987
Q ss_pred cChhHHhhh-----------c-------------------------------chhhhhhhhhhcC---------------
Q 004816 605 ADLSMLRAE-----------T-------------------------------HKFESRYIDNLVG--------------- 627 (729)
Q Consensus 605 ~d~~~~~~~-----------~-------------------------------~~~~~~~~~~~~~--------------- 627 (729)
......... . ..+...+......
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (366)
T 2pl5_A 180 AEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLI 259 (366)
T ss_dssp SBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGG
T ss_pred ccCCCccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHH
Confidence 543211000 0 0000000000000
Q ss_pred ----------Ch-------hhhhhcC------cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE-
Q 004816 628 ----------SE-------KDYYEKS------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY- 683 (729)
Q Consensus 628 ----------~~-------~~~~~~s------p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~- 683 (729)
.. ..+...+ ....+.++++|+|+++|++|.++|++.+.++++.+...|..++++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (366)
T 2pl5_A 260 YQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQ 339 (366)
T ss_dssp STTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHhhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccCHHHHHHHHHHhhhcccCeEEEEeC
Confidence 00 0011111 11256788999999999999999999999999999987777899999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+++||.+.. +...++.+.+.+|+.+
T Consensus 340 ~~~gH~~~~-e~p~~~~~~i~~fl~~ 364 (366)
T 2pl5_A 340 SGEGHDSFL-LKNPKQIEILKGFLEN 364 (366)
T ss_dssp CCBSSGGGG-SCCHHHHHHHHHHHHC
T ss_pred CCCCcchhh-cChhHHHHHHHHHHcc
Confidence 899998644 3446788888888875
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-18 Score=171.64 Aligned_cols=242 Identities=12% Similarity=0.111 Sum_probs=156.7
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh---hhHHHhhCCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---~~~~la~~G~~v~~~d~rGs~ 533 (729)
+.+.+++.+...+..+.+++ |+. . .|+|+++||.+.......|.. ..+.++++||.|+.+|.+|++
T Consensus 5 ~~~~~~~~s~~~~~~~~v~~--~p~-------~--~~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~ 73 (280)
T 1dqz_A 5 PVEYLQVPSASMGRDIKVQF--QGG-------G--PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSS 73 (280)
T ss_dssp CEEEEEEEETTTTEEEEEEE--ECC-------S--SSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTC
T ss_pred eEEEEEEECcccCceeEEEE--cCC-------C--CCEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCc
Confidence 34667777664677777664 333 1 258999999853222223332 335677889999999988654
Q ss_pred CCchhHHHhhc-cCCCcccHHHH--HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH
Q 004816 534 GYGREFRERLL-GRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM 609 (729)
Q Consensus 534 g~g~~~~~~~~-~~~~~~~~~D~--~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~ 609 (729)
++......... +.......++. ..++.++.++..+++++++|+|+||||++|+.++. +|++|+++++.+|..++..
T Consensus 74 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~ 153 (280)
T 1dqz_A 74 FYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSE 153 (280)
T ss_dssp TTSBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTS
T ss_pred cccCCCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccC
Confidence 43210000000 00011223332 24444554433467789999999999999999988 9999999999999877543
Q ss_pred Hhh--hcchh---hhh-hhhhhcCC--hhhhhhcCcccccCCC---CCCEEEEEeCCCC--------------CCChHHH
Q 004816 610 LRA--ETHKF---ESR-YIDNLVGS--EKDYYEKSPINFVDKF---SCPIILFQGLEDK--------------VVPPDQA 664 (729)
Q Consensus 610 ~~~--~~~~~---~~~-~~~~~~~~--~~~~~~~sp~~~~~~i---~~PvL~i~G~~D~--------------~vp~~~~ 664 (729)
... ..... ... .....+++ ...+.+.+|..++.++ .+|+++.||+.|. .++.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~ 233 (280)
T 1dqz_A 154 SWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTN 233 (280)
T ss_dssp TTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHhhhccCcCHHHhcCCCCchhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHHHHHH
Confidence 100 00000 000 01122232 2356677887666554 5799999999997 4678999
Q ss_pred HHHHHHHHhCC-CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 665 RKIYKALKENG-LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 665 ~~~~~~l~~~g-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
++++++|+++| +++++.++++++|.+ ..+...+...+.|+.+.|+
T Consensus 234 ~~~~~~L~~~g~~~~~~~~~~~g~H~~---~~w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 234 QTFRDTYAADGGRNGVFNFPPNGTHSW---PYWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHHHHTTCCSEEEECCSCCCSSH---HHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceEEEecCCCccCh---HHHHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999899976 3456777788888888775
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=174.50 Aligned_cols=183 Identities=14% Similarity=0.056 Sum_probs=134.6
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEe--cCCCCCCCchhHHHhhccCCC----cccHHHHHHHHHHHH
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV--NYGGSTGYGREFRERLLGRWG----IVDVNDCCSCATFLV 563 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~--d~rGs~g~g~~~~~~~~~~~~----~~~~~D~~~~~~~l~ 563 (729)
++.|+||++||++.. ...|...++.|++ +|.|+++ |++|.++++.... ...+... ....+|+.++++++.
T Consensus 60 ~~~p~vv~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGD--ENQFFDFGARLLP-QATILSPVGDVSEHGAARFFRR-TGEGVYDMVDLERATGKMADFIKANR 135 (251)
T ss_dssp TTSCEEEEECCTTCC--HHHHHHHHHHHST-TSEEEEECCSEEETTEEESSCB-CGGGCBCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCC--HhHHHHHHHhcCC-CceEEEecCCcCCCCCcccccC-CCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 356999999998543 3456667777776 4999999 6776654321000 0000001 113677778888877
Q ss_pred hCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccC
Q 004816 564 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 642 (729)
Q Consensus 564 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 642 (729)
++. +.++++|+|||+||++++.++. +|++++++|+++|..+... .....
T Consensus 136 ~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~----------------------------~~~~~ 185 (251)
T 2r8b_A 136 EHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP----------------------------KISPA 185 (251)
T ss_dssp HHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC----------------------------CCCCC
T ss_pred hcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc----------------------------ccccc
Confidence 664 6789999999999999999987 9999999999999865321 01223
Q ss_pred CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 643 ~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.+++|+|+++|++|.++|++++.++++.|++++.++++ ++++++|.+. .+..+.+.+||.++|+
T Consensus 186 ~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l~ 249 (251)
T 2r8b_A 186 KPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVET-VWHPGGHEIR-----SGEIDAVRGFLAAYGG 249 (251)
T ss_dssp CTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----HHHHHHHHHHHGGGC-
T ss_pred ccCCcEEEeccCCCccCCHHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----HHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999987777777 6667899873 3456788999999886
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-18 Score=170.21 Aligned_cols=216 Identities=20% Similarity=0.263 Sum_probs=135.3
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 542 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~ 542 (729)
+... ||.++++..+.. .|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+.....
T Consensus 3 ~~~~-~g~~l~y~~~G~------------g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-- 65 (271)
T 3ia2_A 3 FVAK-DGTQIYFKDWGS------------GKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWT-- 65 (271)
T ss_dssp EECT-TSCEEEEEEESS------------SSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTTSTTSCCCSS--
T ss_pred EEcC-CCCEEEEEccCC------------CCeEEEECCCCCc--HHHHHHHHHHHHhCCceEEEecCCCCccCCCCCC--
Confidence 4455 888888665521 2468899998543 3556777888999999999999998765432210
Q ss_pred hccCCC-cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccCh------------
Q 004816 543 LLGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADL------------ 607 (729)
Q Consensus 543 ~~~~~~-~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~------------ 607 (729)
.+. ....+|+.++++.+ +.+++.++||||||++++.++. .|++++++|+.++....
T Consensus 66 ---~~~~~~~a~d~~~~l~~l------~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 136 (271)
T 3ia2_A 66 ---GNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVP 136 (271)
T ss_dssp ---CCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBC
T ss_pred ---CCCHHHHHHHHHHHHHHh------CCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCccccc
Confidence 111 01245555555554 3468999999999987766555 58999999998764311
Q ss_pred -hHH---hhh----cchhhhh----hhhhh----c--------------CCh-------hhhhhcCcccccCCCCCCEEE
Q 004816 608 -SML---RAE----THKFESR----YIDNL----V--------------GSE-------KDYYEKSPINFVDKFSCPIIL 650 (729)
Q Consensus 608 -~~~---~~~----~~~~~~~----~~~~~----~--------------~~~-------~~~~~~sp~~~~~~i~~PvL~ 650 (729)
..+ ... ...+... +.... . ... ..+...+....+.++++|+|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lv 216 (271)
T 3ia2_A 137 LDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLV 216 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTTCCSCEEE
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccCCCCCEEE
Confidence 000 000 0000000 00000 0 000 001112222346789999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 651 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 651 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++|++|.++|++.+.++++.+.. ..+++++|++||.+. .+...++.+.+.+|+.
T Consensus 217 i~G~~D~~~p~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 217 IHGDGDQIVPFETTGKVAAELIK---GAELKVYKDAPHGFA-VTHAQQLNEDLLAFLK 270 (271)
T ss_dssp EEETTCSSSCGGGTHHHHHHHST---TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred EEeCCCCcCChHHHHHHHHHhCC---CceEEEEcCCCCccc-ccCHHHHHHHHHHHhh
Confidence 99999999999876555544422 459999999999764 3566788888888875
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-18 Score=169.42 Aligned_cols=186 Identities=17% Similarity=0.186 Sum_probs=137.1
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHH
Q 004816 474 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN 553 (729)
Q Consensus 474 ~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~ 553 (729)
+.+|.|.+.. ..+++.|+||++||+++. ...|...++.|+++||.|+++|+||+. ...
T Consensus 34 ~~~~~p~~~~---~~g~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~~s~-----------------~~~ 91 (258)
T 2fx5_A 34 CRIYRPRDLG---QGGVRHPVILWGNGTGAG--PSTYAGLLSHWASHGFVVAAAETSNAG-----------------TGR 91 (258)
T ss_dssp EEEEEESSTT---GGGCCEEEEEEECCTTCC--GGGGHHHHHHHHHHTCEEEEECCSCCT-----------------TSH
T ss_pred EEEEeCCCCc---ccCCCceEEEEECCCCCC--chhHHHHHHHHHhCCeEEEEecCCCCc-----------------cHH
Confidence 5667776411 002367999999998543 456777889999999999999999641 124
Q ss_pred HHHHHHHHHHhC---------CCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchhhhhhhhh
Q 004816 554 DCCSCATFLVGS---------GKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDN 624 (729)
Q Consensus 554 D~~~~~~~l~~~---------~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 624 (729)
|+..+++++.+. ..+|.++++++|||+||++++.++ .+++++++++.+|......
T Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a-~~~~v~~~v~~~~~~~~~~--------------- 155 (258)
T 2fx5_A 92 EMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG-QDTRVRTTAPIQPYTLGLG--------------- 155 (258)
T ss_dssp HHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT-TSTTCCEEEEEEECCSSTT---------------
T ss_pred HHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc-cCcCeEEEEEecCcccccc---------------
Confidence 555666666542 245678999999999999999887 5568999999887543100
Q ss_pred hcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHH-HHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHH
Q 004816 625 LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQ-ARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQ 703 (729)
Q Consensus 625 ~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~-~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 703 (729)
.....+.++++|+|+++|++|.++|++. +.++++. .+.+++++++++++|.+.. +....+.+.+
T Consensus 156 -----------~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~~-~~~~~~~~~i 220 (258)
T 2fx5_A 156 -----------HDSASQRRQQGPMFLMSGGGDTIAFPYLNAQPVYRR---ANVPVFWGERRYVSHFEPV-GSGGAYRGPS 220 (258)
T ss_dssp -----------CCGGGGGCCSSCEEEEEETTCSSSCHHHHTHHHHHH---CSSCEEEEEESSCCTTSST-TTCGGGHHHH
T ss_pred -----------cchhhhccCCCCEEEEEcCCCcccCchhhHHHHHhc---cCCCeEEEEECCCCCcccc-chHHHHHHHH
Confidence 0012356788999999999999999986 7777766 3467899999999998654 2234677889
Q ss_pred HHHHHHHhC
Q 004816 704 MVFFARVVG 712 (729)
Q Consensus 704 ~~fl~~~l~ 712 (729)
.+||++++.
T Consensus 221 ~~fl~~~l~ 229 (258)
T 2fx5_A 221 TAWFRFQLM 229 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998875
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=181.89 Aligned_cols=193 Identities=16% Similarity=0.218 Sum_probs=135.7
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch--------------hH-------HH---hhc
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR--------------EF-------RE---RLL 544 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~--------------~~-------~~---~~~ 544 (729)
+++.|+||++||+++. ...+...++.|+++||.|+++|+||.+.... .| .. ...
T Consensus 95 ~~~~P~Vv~~HG~~~~--~~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 172 (383)
T 3d59_A 95 GEKYPLVVFSHGLGAF--RTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTLKQEEETHIR 172 (383)
T ss_dssp SSCEEEEEEECCTTCC--TTTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCC--chHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCceeeeccccCcccchhhh
Confidence 4578999999998544 3456788999999999999999998765321 00 00 000
Q ss_pred cCCCcccHHHHHHHHHHHHh--------------------CCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccc
Q 004816 545 GRWGIVDVNDCCSCATFLVG--------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGV 604 (729)
Q Consensus 545 ~~~~~~~~~D~~~~~~~l~~--------------------~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~ 604 (729)
...-....+|+..++++|.+ ...+|.+||+++|||+||++++.++.++++|+++|+.+|.
T Consensus 173 ~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~v~a~v~~~~~ 252 (383)
T 3d59_A 173 NEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQRFRCGIALDAW 252 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHHhhCCCccEEEEeCCc
Confidence 00000125788999999875 4557788999999999999999998866679999999885
Q ss_pred cChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 605 ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 605 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
.... .. ....++++|+|++||++|..+ .. .+..+.+...+.++++++++
T Consensus 253 ~~p~-------------------~~---------~~~~~i~~P~Lii~g~~D~~~--~~-~~~~~~l~~~~~~~~~~~~~ 301 (383)
T 3d59_A 253 MFPL-------------------GD---------EVYSRIPQPLFFINSEYFQYP--AN-IIKMKKCYSPDKERKMITIR 301 (383)
T ss_dssp CTTC-------------------CG---------GGGGSCCSCEEEEEETTTCCH--HH-HHHHHTTCCTTSCEEEEEET
T ss_pred cCCC-------------------ch---------hhhccCCCCEEEEecccccch--hh-HHHHHHHHhcCCceEEEEeC
Confidence 3210 00 112567899999999999743 33 33346666677889999999
Q ss_pred CCCcccCC---------------------cccH-HHHHHHHHHHHHHHhCCC
Q 004816 685 GEQHGFRK---------------------AENI-KFTLEQQMVFFARVVGHF 714 (729)
Q Consensus 685 ~~gH~~~~---------------------~~~~-~~~~~~~~~fl~~~l~~~ 714 (729)
+++|.+.. ++.. ....+.+++||+++|+..
T Consensus 302 g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~~~ 353 (383)
T 3d59_A 302 GSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLGLH 353 (383)
T ss_dssp TCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99998521 1112 233457999999999844
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=174.17 Aligned_cols=199 Identities=15% Similarity=0.106 Sum_probs=141.6
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-------hhhHHHhhCCcEEEEecCCCCCCCchhHHHhh-
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-------LSIQYWTSRGWAFVDVNYGGSTGYGREFRERL- 543 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-------~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~- 543 (729)
+.+.++.|.+ . +.|.||++||+.... ..|. .+++.|+++||.|+++|+||.|..+.......
T Consensus 50 ~~~~~~~p~~-------~-~~~~vvl~HG~g~~~--~~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~ 119 (328)
T 1qlw_A 50 MYVRYQIPQR-------A-KRYPITLIHGCCLTG--MTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINA 119 (328)
T ss_dssp EEEEEEEETT-------C-CSSCEEEECCTTCCG--GGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHH
T ss_pred EEEEEEccCC-------C-CCccEEEEeCCCCCC--CccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCccccc
Confidence 5555566644 1 236699999985333 3344 47888999999999999998765543211100
Q ss_pred ---------------------------cc-CCCc---------ccHHH------------------HHHHHHHHHhCCCC
Q 004816 544 ---------------------------LG-RWGI---------VDVND------------------CCSCATFLVGSGKA 568 (729)
Q Consensus 544 ---------------------------~~-~~~~---------~~~~D------------------~~~~~~~l~~~~~~ 568 (729)
.+ .|.. ...++ +.+++..++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-- 197 (328)
T 1qlw_A 120 VKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL-- 197 (328)
T ss_dssp HHTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH--
T ss_pred ccccccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh--
Confidence 00 0000 00122 445555555541
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCC
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCP 647 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P 647 (729)
+++.++|||+||.+++.++. +|++++++|+.+|... .++......+++|
T Consensus 198 --~~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~----------------------------~~~~~~~~~~~~P 247 (328)
T 1qlw_A 198 --DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC----------------------------PKPEDVKPLTSIP 247 (328)
T ss_dssp --TSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC----------------------------CCGGGCGGGTTSC
T ss_pred --CCceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC----------------------------CCHHHHhhccCCC
Confidence 38999999999999999988 8999999999997531 0011112235689
Q ss_pred EEEEEeCCCCCCCh-----HHHHHHHHHHHhCCCCEEEEEECCCC-----cccCCcccHHHHHHHHHHHHHHHhC
Q 004816 648 IILFQGLEDKVVPP-----DQARKIYKALKENGLPVALVEYEGEQ-----HGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 648 vL~i~G~~D~~vp~-----~~~~~~~~~l~~~g~~~~~~~~~~~g-----H~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+|+++|++|..+|+ ++++++++.++++|.+++++++|++| |.+....+..+..+.+.+||++++.
T Consensus 248 vLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl~~~~~ 322 (328)
T 1qlw_A 248 VLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRNTA 322 (328)
T ss_dssp EEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHTCC
T ss_pred EEEEeccCCccccchhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHHHhccc
Confidence 99999999999996 99999999999999999999999665 9876655578899999999999876
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-17 Score=163.54 Aligned_cols=215 Identities=15% Similarity=0.107 Sum_probs=137.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+.+ ..|.||++||.+++ ....|...++.|+++||.|+++|+||.|.+... ...+
T Consensus 10 ~g~~l~~~~~g~-----------~~~~vvllHG~~~~-~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~-----~~~~ 72 (254)
T 2ocg_A 10 NGVQLHYQQTGE-----------GDHAVLLLPGMLGS-GETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPP-----DRDF 72 (254)
T ss_dssp TTEEEEEEEEEC-----------CSEEEEEECCTTCC-HHHHCHHHHHHSCTTTEEEEEECCTTSTTCCSS-----CCCC
T ss_pred CCEEEEEEEecC-----------CCCeEEEECCCCCC-CccchHHHHHHHhhCCCeEEEECCCCCCCCCCC-----CCCC
Confidence 688887655421 12579999997433 133466778888899999999999987654321 1111
Q ss_pred Ccc-cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH----hhhc---chhh
Q 004816 548 GIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML----RAET---HKFE 618 (729)
Q Consensus 548 ~~~-~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~----~~~~---~~~~ 618 (729)
... -.+++..+++++.+. +.+++.++|||+||.+|+.++. +|++++++|+.++....... .... ..+.
T Consensus 73 ~~~~~~~~~~~~~~~l~~l---~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (254)
T 2ocg_A 73 PADFFERDAKDAVDLMKAL---KFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWS 149 (254)
T ss_dssp CTTHHHHHHHHHHHHHHHT---TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSC
T ss_pred ChHHHHHHHHHHHHHHHHh---CCCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHH
Confidence 111 123444555555443 3468999999999999999998 99999999998875322110 0000 0000
Q ss_pred hh---hhhhhcCC-------------hhhhh----hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCE
Q 004816 619 SR---YIDNLVGS-------------EKDYY----EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 678 (729)
Q Consensus 619 ~~---~~~~~~~~-------------~~~~~----~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~ 678 (729)
.. .+....+. ...+. .......+.++++|+|+++|++|.++|++.+..+.+.+. ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~ 225 (254)
T 2ocg_A 150 ERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVK----GS 225 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHST----TC
T ss_pred HHhHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCCHHHHHHHHHhCC----CC
Confidence 00 00000000 00000 011234567899999999999999999999888887765 34
Q ss_pred EEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 679 ALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 679 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
+++++|++||.... +...++.+.+.+|+
T Consensus 226 ~~~~~~~~gH~~~~-e~p~~~~~~i~~fl 253 (254)
T 2ocg_A 226 RLHLMPEGKHNLHL-RFADEFNKLAEDFL 253 (254)
T ss_dssp EEEEETTCCTTHHH-HTHHHHHHHHHHHH
T ss_pred EEEEcCCCCCchhh-hCHHHHHHHHHHHh
Confidence 89999999997543 45667777888886
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-19 Score=188.86 Aligned_cols=210 Identities=14% Similarity=0.055 Sum_probs=138.8
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc------------ccch----hhhHHHhhC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR------------GILN----LSIQYWTSR 520 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~------------~~~~----~~~~~la~~ 520 (729)
..+.+++.+. +|..+.++++.|.+ ..++.|+||++||..+.... ..|. .+++.|+++
T Consensus 86 ~~e~v~~~~~-~g~~l~~~l~~P~~------~~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~ 158 (391)
T 3g8y_A 86 ILEKWEFYPF-PKSVSTFLVLKPEH------LKGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKE 158 (391)
T ss_dssp EEEEEEECCS-TTCCEEEEEEEETT------CCSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTT
T ss_pred EEEEEEEEcC-CCCEEEEEEEeCCC------CCCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHC
Confidence 3477888887 89999999999975 13568999999997543210 0122 567899999
Q ss_pred CcEEEEecCCCCCCCchhHH--------H-hh-------ccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHH
Q 004816 521 GWAFVDVNYGGSTGYGREFR--------E-RL-------LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 584 (729)
Q Consensus 521 G~~v~~~d~rGs~g~g~~~~--------~-~~-------~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~ 584 (729)
||+|+++|+||.+.++.... . .. ...+....+.|+.+++++|.+++.+|++||+|+|||+||++
T Consensus 159 G~~Vl~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~ 238 (391)
T 3g8y_A 159 GYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEP 238 (391)
T ss_dssp TCEEEECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHH
T ss_pred CCEEEEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHH
Confidence 99999999998776543210 0 00 01111223489999999999999899999999999999999
Q ss_pred HHHHHhCCCcceEEEEeccccChhHHhhhcch--------h---hhhhhhhhcCChhhhhhcCcccccCCC-CCCEEEEE
Q 004816 585 TLAALAFRDTFKAGASLYGVADLSMLRAETHK--------F---ESRYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQ 652 (729)
Q Consensus 585 a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~PvL~i~ 652 (729)
++.++..+++++++|+.+++..+......... + ...+.. ......+....+..+ ..|+|++|
T Consensus 239 al~~a~~~~~i~a~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p------~~~~~~d~~~~~~~~ap~P~Liih 312 (391)
T 3g8y_A 239 MMVLGVLDKDIYAFVYNDFLCQTQERAVVMTKPDKENRRPFPNSIRHLIP------GYWRYFNFPDVVASLAPRPIIFTE 312 (391)
T ss_dssp HHHHHHHCTTCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSSCGGGCCT------TGGGTCCHHHHHHTTTTSCEEECS
T ss_pred HHHHHHcCCceeEEEEccCCCCcccchhhcccccccccccccccHHHhCc------cHHhhCCHHHHHHhhcCCCEEEEc
Confidence 99998877899999999888877433211100 0 001111 111112222222222 36999999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCC--CEEEEEEC
Q 004816 653 GLEDKVVPPDQARKIYKALKENGL--PVALVEYE 684 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~~ 684 (729)
|++|.++ +. +.+.++..+. ++++..+|
T Consensus 313 G~~D~~v--~~---~~~~~~~~g~~~~~~~~~~~ 341 (391)
T 3g8y_A 313 GGLDRDF--RL---VQSAYAASGKPENAEFHHYP 341 (391)
T ss_dssp CBCHHHH--HH---HHHHHHHTTCGGGEEECCCG
T ss_pred CCccHHH--HH---HHHHHHHcCCCceeEEEEeC
Confidence 9999876 33 3444444443 45665555
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-17 Score=169.94 Aligned_cols=219 Identities=12% Similarity=0.115 Sum_probs=142.2
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+...+.. +|..+.+..+.+ .|+||++||.+.. ...|...++.|++ ||.|+++|+||.|.....
T Consensus 49 ~~~~~~~--~~~~~~~~~~g~------------~p~vv~lhG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G~G~S~~~ 111 (314)
T 3kxp_A 49 ISRRVDI--GRITLNVREKGS------------GPLMLFFHGITSN--SAVFEPLMIRLSD-RFTTIAVDQRGHGLSDKP 111 (314)
T ss_dssp EEEEEEC--SSCEEEEEEECC------------SSEEEEECCTTCC--GGGGHHHHHTTTT-TSEEEEECCTTSTTSCCC
T ss_pred ceeeEEE--CCEEEEEEecCC------------CCEEEEECCCCCC--HHHHHHHHHHHHc-CCeEEEEeCCCcCCCCCC
Confidence 3344444 677887655422 4789999998544 3456677777777 699999999987654311
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc---
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET--- 614 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~--- 614 (729)
......++..+.+..+++.. +.++++++|||+||++++.++. +|++++++|+.++...........
T Consensus 112 --------~~~~~~~~~~~dl~~~l~~l--~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 181 (314)
T 3kxp_A 112 --------ETGYEANDYADDIAGLIRTL--ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEA 181 (314)
T ss_dssp --------SSCCSHHHHHHHHHHHHHHH--TSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHH
T ss_pred --------CCCCCHHHHHHHHHHHHHHh--CCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHH
Confidence 11233455555555444432 3379999999999999999998 999999999998765332111000
Q ss_pred --c-------hh--hhhhhhhhc-C-Chh---hh---------------------------hhcCcccccCCCCCCEEEE
Q 004816 615 --H-------KF--ESRYIDNLV-G-SEK---DY---------------------------YEKSPINFVDKFSCPIILF 651 (729)
Q Consensus 615 --~-------~~--~~~~~~~~~-~-~~~---~~---------------------------~~~sp~~~~~~i~~PvL~i 651 (729)
. .. ...+..... . ... .+ ...+....+.++++|+|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii 261 (314)
T 3kxp_A 182 RVNAGSQLFEDIKAVEAYLAGRYPNIPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVLIV 261 (314)
T ss_dssp HTTTTCSCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEEEE
T ss_pred HhhhchhhhcCHHHHHHHHHhhcccCchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEEEE
Confidence 0 00 000000000 0 000 00 0003344566789999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 652 QGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 652 ~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+|++|.++|++.+.++.+.+. .++++++|++||.+. .+....+.+.+.+||++
T Consensus 262 ~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~g~gH~~~-~e~~~~~~~~i~~fl~~ 314 (314)
T 3kxp_A 262 RGESSKLVSAAALAKTSRLRP----DLPVVVVPGADHYVN-EVSPEITLKAITNFIDA 314 (314)
T ss_dssp EETTCSSSCHHHHHHHHHHCT----TSCEEEETTCCSCHH-HHCHHHHHHHHHHHHHC
T ss_pred ecCCCccCCHHHHHHHHHhCC----CceEEEcCCCCCcch-hhCHHHHHHHHHHHHhC
Confidence 999999999999998888774 358999999999863 34566788888888863
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-17 Score=164.78 Aligned_cols=220 Identities=16% Similarity=0.185 Sum_probs=140.3
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cchhhhHHHhhCCcEEEEecCCCCCCCch-h
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGSTGYGR-E 538 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~la~~G~~v~~~d~rGs~g~g~-~ 538 (729)
..+... +|.++++..+.|.+ .|.||++||.+.+. . .|...+..| +.||.|+++|+||.|.+.. .
T Consensus 5 ~~~~~~-~g~~l~~~~~G~~~----------~~~vvllHG~~~~~--~~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~~ 70 (286)
T 2yys_A 5 IGYVPV-GEAELYVEDVGPVE----------GPALFVLHGGPGGN--AYVLREGLQDY-LEGFRVVYFDQRGSGRSLELP 70 (286)
T ss_dssp EEEEEC-SSCEEEEEEESCTT----------SCEEEEECCTTTCC--SHHHHHHHGGG-CTTSEEEEECCTTSTTSCCCC
T ss_pred eeEEeE-CCEEEEEEeecCCC----------CCEEEEECCCCCcc--hhHHHHHHHHh-cCCCEEEEECCCCCCCCCCCc
Confidence 334444 78889877765421 36799999985443 4 466677777 4689999999998765432 1
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh----
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE---- 613 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~---- 613 (729)
. . ......+++.+.+..+++.- +.+++.|+||||||.+|+.++. +|+ ++++|+.++..........
T Consensus 71 ~-----~-~~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~ 141 (286)
T 2yys_A 71 Q-----D-PRLFTVDALVEDTLLLAEAL--GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEA 141 (286)
T ss_dssp S-----C-GGGCCHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHH
T ss_pred c-----C-cccCcHHHHHHHHHHHHHHh--CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHH
Confidence 0 0 00122334433333333331 3468999999999999999998 999 9999999986533220000
Q ss_pred ---------cchhh--------hhhhhh--h---------------cC---Ch---hh-----hhhcCcccccCCCCCCE
Q 004816 614 ---------THKFE--------SRYIDN--L---------------VG---SE---KD-----YYEKSPINFVDKFSCPI 648 (729)
Q Consensus 614 ---------~~~~~--------~~~~~~--~---------------~~---~~---~~-----~~~~sp~~~~~~i~~Pv 648 (729)
...+. ..+... . .. .. .. ....+....+.++++|+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 221 (286)
T 2yys_A 142 AGLAPLPDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPERRPL 221 (286)
T ss_dssp TTCCCCSCHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCCCSSCE
T ss_pred hccccchhHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhhcCCCE
Confidence 00000 000000 0 00 00 00 01112233467889999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
|+++|++|..+|++ ++++.+ +.. +++++++++||... .+...++.+.+.+|+.+.
T Consensus 222 lvi~G~~D~~~~~~-~~~~~~-~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 276 (286)
T 2yys_A 222 YVLVGERDGTSYPY-AEEVAS-RLR----APIRVLPEAGHYLW-IDAPEAFEEAFKEALAAL 276 (286)
T ss_dssp EEEEETTCTTTTTT-HHHHHH-HHT----CCEEEETTCCSSHH-HHCHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCcCCHh-HHHHHh-CCC----CCEEEeCCCCCCcC-hhhHHHHHHHHHHHHHhh
Confidence 99999999999999 888888 763 47899999999754 345678888999999864
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-18 Score=165.17 Aligned_cols=190 Identities=12% Similarity=0.075 Sum_probs=136.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh--hhHHHhhCCcEEEEecCCCCCCCchhHHHhhcc
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 545 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~ 545 (729)
+|.+++++.+.|.+ +++.|+||++||.+... ..|.. .++.|+++||.|+++|+||.+..... ....
T Consensus 15 ~g~~l~~~~~~p~~-------~~~~~~vv~~hG~~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~---~~~~ 82 (210)
T 1imj_A 15 QGQALFFREALPGS-------GQARFSVLLLHGIRFSS--ETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEA---AAPA 82 (210)
T ss_dssp TTEEECEEEEECSS-------SCCSCEEEECCCTTCCH--HHHHHHTHHHHHHHTTCEEEEECCTTSGGGTTS---CCSS
T ss_pred CCeEEEEEEeCCCC-------CCCCceEEEECCCCCcc--ceeecchhHHHHHHCCCeEEEecCCCCCCCCCC---CCcc
Confidence 79999999998864 34578999999985433 34444 47889999999999999975432221 1111
Q ss_pred CCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhh
Q 004816 546 RWGIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYID 623 (729)
Q Consensus 546 ~~~~~-~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 623 (729)
.+... ..+|+..+++.+ +.++++++|||+||.+++.++. +|++++++|+.+|......
T Consensus 83 ~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~-------------- 142 (210)
T 1imj_A 83 PIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI-------------- 142 (210)
T ss_dssp CTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS--------------
T ss_pred hhhhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCccccc--------------
Confidence 11110 125666666665 3468999999999999999888 8999999999998754210
Q ss_pred hhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHH
Q 004816 624 NLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQ 703 (729)
Q Consensus 624 ~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 703 (729)
....+.++++|+|+++|++|. ++++.++++ +.+ .+++++++++++|.+.. +......+.+
T Consensus 143 -------------~~~~~~~~~~p~l~i~g~~D~-~~~~~~~~~-~~~----~~~~~~~~~~~~H~~~~-~~~~~~~~~i 202 (210)
T 1imj_A 143 -------------NAANYASVKTPALIVYGDQDP-MGQTSFEHL-KQL----PNHRVLIMKGAGHPCYL-DKPEEWHTGL 202 (210)
T ss_dssp -------------CHHHHHTCCSCEEEEEETTCH-HHHHHHHHH-TTS----SSEEEEEETTCCTTHHH-HCHHHHHHHH
T ss_pred -------------cchhhhhCCCCEEEEEcCccc-CCHHHHHHH-hhC----CCCCEEEecCCCcchhh-cCHHHHHHHH
Confidence 112234678999999999999 988777666 443 36799999999997532 3355677788
Q ss_pred HHHHHH
Q 004816 704 MVFFAR 709 (729)
Q Consensus 704 ~~fl~~ 709 (729)
.+|+++
T Consensus 203 ~~fl~~ 208 (210)
T 1imj_A 203 LDFLQG 208 (210)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888865
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=167.38 Aligned_cols=218 Identities=18% Similarity=0.256 Sum_probs=136.4
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 542 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~ 542 (729)
+... +|.++++..+.|.+ .|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+....
T Consensus 3 ~~~~-~g~~l~y~~~g~~~----------~~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~--- 66 (275)
T 1a88_A 3 VTTS-DGTNIFYKDWGPRD----------GLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPS--- 66 (275)
T ss_dssp EECT-TSCEEEEEEESCTT----------SCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS---
T ss_pred EEcc-CCCEEEEEEcCCCC----------CceEEEECCCCCc--hhhHHHHHHHHHHCCceEEEEcCCcCCCCCCCC---
Confidence 3444 78888876665422 3679999997543 345777888999999999999999876543211
Q ss_pred hccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEEeccccCh------------
Q 004816 543 LLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADL------------ 607 (729)
Q Consensus 543 ~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-~~~~~a~v~~~~~~d~------------ 607 (729)
..+.. ...+|+.++++.+ +.+++.++||||||.+++.++. + |++++++|+.++....
T Consensus 67 --~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 138 (275)
T 1a88_A 67 --TGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLP 138 (275)
T ss_dssp --SCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBC
T ss_pred --CCCCHHHHHHHHHHHHHHc------CCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccCccCcccCC
Confidence 11111 1145555555554 3468999999999999988665 5 9999999998864211
Q ss_pred -hHH---hhh----cchhhhhhhh-hhc-----------------------CChh-------hhhhcCcccccCCCCCCE
Q 004816 608 -SML---RAE----THKFESRYID-NLV-----------------------GSEK-------DYYEKSPINFVDKFSCPI 648 (729)
Q Consensus 608 -~~~---~~~----~~~~~~~~~~-~~~-----------------------~~~~-------~~~~~sp~~~~~~i~~Pv 648 (729)
..+ ... ...+...+.. ... .... .+...+....+.++++|+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 218 (275)
T 1a88_A 139 LEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPV 218 (275)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCE
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccccccCCCCE
Confidence 000 000 0000000000 000 0000 011112223456789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
|+++|++|..+|++...+.+..+. .++++++++++||.+. .+...++.+.+.+|+.
T Consensus 219 lii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 274 (275)
T 1a88_A 219 LVAHGTDDQVVPYADAAPKSAELL---ANATLKSYEGLPHGML-STHPEVLNPDLLAFVK 274 (275)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHHS---TTEEEEEETTCCTTHH-HHCHHHHHHHHHHHHH
T ss_pred EEEecCCCccCCcHHHHHHHHhhC---CCcEEEEcCCCCccHH-HhCHHHHHHHHHHHhh
Confidence 999999999999875444333322 2679999999999764 3566788888889885
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-18 Score=186.46 Aligned_cols=212 Identities=15% Similarity=0.059 Sum_probs=140.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc------------ccch----hhhHHHhhC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR------------GILN----LSIQYWTSR 520 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~------------~~~~----~~~~~la~~ 520 (729)
..+.+.+.+. +|..+.++++.|.+ ..++.|+||++||++.+... ..|. ..++.|+++
T Consensus 91 ~~e~v~~~~~-~g~~l~~~l~~P~~------~~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~ 163 (398)
T 3nuz_A 91 RLEKWEFYPL-PKCVSTFLVLIPDN------INKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKE 163 (398)
T ss_dssp EEEEEEECCS-TTBCEEEEEEEESS------CCSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTT
T ss_pred EEEEEEEEcC-CCcEEEEEEEeCCC------CCCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHC
Confidence 4577888887 99999999999976 23568999999998553221 1222 477899999
Q ss_pred CcEEEEecCCCCCCCchhHHHh----------------hccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHH
Q 004816 521 GWAFVDVNYGGSTGYGREFRER----------------LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 584 (729)
Q Consensus 521 G~~v~~~d~rGs~g~g~~~~~~----------------~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~ 584 (729)
||+|+++|+||.++.+...... ....++...+.|+.++++||.+++.+|++||+|+|||+||++
T Consensus 164 Gy~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~ 243 (398)
T 3nuz_A 164 GYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEP 243 (398)
T ss_dssp TCEEEEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHH
T ss_pred CCEEEEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHH
Confidence 9999999999877654322100 111122234689999999999998899999999999999999
Q ss_pred HHHHHhCCCcceEEEEeccccChhHHhhhcch-----------hhhhhhhhhcCChhhhhhcCcccccCC-CCCCEEEEE
Q 004816 585 TLAALAFRDTFKAGASLYGVADLSMLRAETHK-----------FESRYIDNLVGSEKDYYEKSPINFVDK-FSCPIILFQ 652 (729)
Q Consensus 585 a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~PvL~i~ 652 (729)
++.++..+++++++|+.+++..+......... ....+.. ......+....+.. ...|+|++|
T Consensus 244 a~~~aa~~~~i~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~d~~~~~~~~ap~PlLii~ 317 (398)
T 3nuz_A 244 MMVLGTLDTSIYAFVYNDFLCQTQERAEVMTMPDKNGRRPFPNSIRHLIP------DFWKNFNFPDIVAALAPRPIILTE 317 (398)
T ss_dssp HHHHHHHCTTCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSSCGGGCCT------THHHHCCHHHHHHHTTTSCEEECS
T ss_pred HHHHHhcCCcEEEEEEecccccchhhhhhhccccccccccCCccHHHhcc------hHhhhCCHHHHHHhhCCCcEEEee
Confidence 99888877789999998777766543111110 0001111 11111111111111 236999999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
|..|..+ ++..++++++. ...++++++||
T Consensus 318 G~~D~~v--~~~~~~y~~~g-~~~~~~~~~~p 346 (398)
T 3nuz_A 318 GGLDRDL--DLVRKAYAIVG-TPDNVKIYHYK 346 (398)
T ss_dssp CBCHHHH--HHHHHHHHHHT-CTTSEEECCCG
T ss_pred CCchHHH--HHHHHHHHHcC-CCcceEEEEeC
Confidence 9999543 45555555443 23467777776
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-17 Score=185.21 Aligned_cols=253 Identities=12% Similarity=0.054 Sum_probs=176.7
Q ss_pred CceEEEECCEEEEEECC---CC--cEEEEeCCCCCCCCeecCCCCCCCceeee---------cceec--CCCCE-EEEEE
Q 004816 147 GGAFRIFGDTVIFSNYK---DQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYA---------DGIFD--PRFNR-YVTVR 209 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~---~~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~---------~~~~S--PdG~~-l~~~~ 209 (729)
.....++++.++|.... ++ .||.+ ..+ +..++|+... ..+. .+.|+ |||++ |+|+.
T Consensus 26 ~~~~~~s~~~~~~~~~~~~~~~~~~l~~~-~~~--~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~ 98 (662)
T 3azo_A 26 PACVGAVGDEVWWVAPRPAEAGRATLVRR-RAD--GAEESALPAP----WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH 98 (662)
T ss_dssp CEEEEEETTEEEEEEEETTTTTEEEEEEE-CTT--SCEEESSCTT----CCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred cceeEEcCCeEEEEecCcccCCcEEEEEE-CCC--CCcceeCCCC----ccccccccccCCccceeeeecCCCeEEEEEE
Confidence 44566778888888752 22 67777 444 7788888763 2222 44565 99999 88876
Q ss_pred eccCCCCCCcceEEEEEEcC--C-CceEEeee-----CCCeeeeeeeCCCCCeEEEEEecCCC--CCCCCcEEEEEEecC
Q 004816 210 EDRRQDALNSTTEIVAIALN--G-QNIQVLVS-----GSDFYAFPRMDPRGERMAWIEWHHPN--MPWDKAELWVGYISE 279 (729)
Q Consensus 210 ~~~~~~~~~~~~~l~~~dl~--~-g~~~~lt~-----~~~~~~~~~~SPDG~~la~~~~~~~~--~~~~~~~l~~~d~~~ 279 (729)
... .+||+++++ + ++.++|+. .......++|||||++|+|.+.+... ......+||++|++
T Consensus 99 ~~~--------~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~- 169 (662)
T 3azo_A 99 FGD--------QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD- 169 (662)
T ss_dssp TTT--------CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT-
T ss_pred CCC--------CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC-
Confidence 532 569999998 6 88889987 34566789999999999999865311 00134679999998
Q ss_pred C------CCeeeeEEec-CCCCCccccccCceeCCCCc-EEEEEecCC----CceEEEEEEcC-CC---eEEEeecc-Cc
Q 004816 280 N------GDVYKRVCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKN----GFWNLHKWIES-NN---EVLAIYSL-DA 342 (729)
Q Consensus 280 ~------g~~~~~~~~~-~~~~~~~~~~~~~~wspDG~-l~~~~~~~~----g~~~l~~~d~~-~g---~~~~l~~~-~~ 342 (729)
+ ++. +.+. ... .....+.|||||+ |+|.+.... +...|+++|++ +| +.+.++.. ..
T Consensus 170 ~~~~~~~~~~---~~l~~~~~----~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 170 GSAAADRSAV---RELSDDAH----RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp STTTTCGGGS---EESSCSCS----SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred CCccccCCce---eEEEecCC----CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 5 443 2333 332 4556799999999 888876522 23689999998 57 66777643 34
Q ss_pred cccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcce---------EEe-eeeCCEEEE
Q 004816 343 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI---------DNI-TLGNDCLFV 412 (729)
Q Consensus 343 ~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v---------~~~-~~~~~~~~~ 412 (729)
....+.|++ |++ +++.+++++..+||++++++++.++++.....+ ..+ ..+++++++
T Consensus 243 ~~~~~~~sp------------dg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 243 AIAQAEWAP------------DGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp CEEEEEECT------------TSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred eEcceEECC------------CCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence 455567765 676 888888888889999999899988887653322 223 334666666
Q ss_pred EEeCCCCCceEEEEEcCCCcceeee
Q 004816 413 EGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 413 ~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
.... ....||.+++++++.++|+
T Consensus 310 ~~~~--~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 310 VHGK--GAAVLGILDPESGELVDAA 332 (662)
T ss_dssp EEBS--SSCEEEEEETTTTEEEECC
T ss_pred EEEc--CccEEEEEECCCCcEEEec
Confidence 6654 6678999999888876665
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=169.09 Aligned_cols=218 Identities=18% Similarity=0.306 Sum_probs=136.4
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 542 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~ 542 (729)
+... +|.++++..+.|.+ .|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+....
T Consensus 4 ~~~~-~g~~l~y~~~g~~~----------~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~D~~G~G~S~~~~--- 67 (276)
T 1zoi_A 4 VTTK-DGVQIFYKDWGPRD----------APVIHFHHGWPLS--ADDWDAQLLFFLAHGYRVVAHDRRGHGRSSQVW--- 67 (276)
T ss_dssp EECT-TSCEEEEEEESCTT----------SCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS---
T ss_pred EECC-CCcEEEEEecCCCC----------CCeEEEECCCCcc--hhHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC---
Confidence 3444 78888877665422 3679999998543 345777888999999999999999876654211
Q ss_pred hccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEEeccccCh------------
Q 004816 543 LLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADL------------ 607 (729)
Q Consensus 543 ~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-~~~~~a~v~~~~~~d~------------ 607 (729)
..+.. ...+|+.++++.+ +.+++.|+||||||.+++.++. + |++++++|+.++....
T Consensus 68 --~~~~~~~~~~d~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 139 (276)
T 1zoi_A 68 --DGHDMDHYADDVAAVVAHL------GIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLP 139 (276)
T ss_dssp --SCCSHHHHHHHHHHHHHHH------TCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCCSSCTTSBC
T ss_pred --CCCCHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCcccccccccccccc
Confidence 11111 1145566666655 3468999999999999988665 6 9999999998864210
Q ss_pred -hHH---hhh----cchhhhhhhh-hhc-----------------------CChhh-------hhhcCcccccCCCCCCE
Q 004816 608 -SML---RAE----THKFESRYID-NLV-----------------------GSEKD-------YYEKSPINFVDKFSCPI 648 (729)
Q Consensus 608 -~~~---~~~----~~~~~~~~~~-~~~-----------------------~~~~~-------~~~~sp~~~~~~i~~Pv 648 (729)
..+ ... ...+...+.. ... ..... +...+....+.++++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 219 (276)
T 1zoi_A 140 KSVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPV 219 (276)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhhccccCCCE
Confidence 000 000 0000000000 000 00000 01112223456789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
|+++|++|.++|++...+.+..+. .+.++++++++||... .+...++.+.+.+|+.
T Consensus 220 l~i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 220 LVMHGDDDQIVPYENSGVLSAKLL---PNGALKTYKGYPHGMP-TTHADVINADLLAFIR 275 (276)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHHS---TTEEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred EEEEcCCCcccChHHHHHHHHhhC---CCceEEEcCCCCCchh-hhCHHHHHHHHHHHhc
Confidence 999999999999874443333322 2579999999999764 3566788888888874
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.3e-17 Score=164.15 Aligned_cols=215 Identities=19% Similarity=0.253 Sum_probs=140.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cc-hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhcc
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL-NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 545 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~-~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~ 545 (729)
+|..+ .+|.|.+ ++.|+||++|||++..... .+ ......+++.||.|+.+|||+.+.+ .+.
T Consensus 13 ~~~~~--~~y~p~~--------~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~--~~p----- 75 (274)
T 2qru_A 13 NGATV--TIYPTTT--------EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT--KID----- 75 (274)
T ss_dssp TSCEE--EEECCSS--------SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS--CHH-----
T ss_pred CCeeE--EEEcCCC--------CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC--CCc-----
Confidence 56555 4566642 3468999999997543322 23 4456677888999999999986643 221
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh----CCCcceEEEEeccccChhHHhhh----cchh
Q 004816 546 RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADLSMLRAE----THKF 617 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~~~d~~~~~~~----~~~~ 617 (729)
..++|+.++++|+.++.. +.++|+|+|+|+||.+|+.++. .+++++++++.+|..+....... ....
T Consensus 76 ----~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~ 150 (274)
T 2qru_A 76 ----HILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQAI 150 (274)
T ss_dssp ----HHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSCC
T ss_pred ----HHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhccccc
Confidence 237999999999987642 2689999999999999998875 57789999999887762111000 0000
Q ss_pred hhhhhhhh----------c-------------CChhhhhh--------cCcc--cccCCCCCCEEEEEeCCCCCCChHHH
Q 004816 618 ESRYIDNL----------V-------------GSEKDYYE--------KSPI--NFVDKFSCPIILFQGLEDKVVPPDQA 664 (729)
Q Consensus 618 ~~~~~~~~----------~-------------~~~~~~~~--------~sp~--~~~~~i~~PvL~i~G~~D~~vp~~~~ 664 (729)
........ + .....+.. ..++ ..+..+ +|+||++|+.|..++..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G~~D~~~~~~~~ 229 (274)
T 2qru_A 151 SAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTASSSDEEVPFRYS 229 (274)
T ss_dssp CSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEETTCSSSCTHHH
T ss_pred cHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEecCCCCcCHHHH
Confidence 00000000 0 00000000 0011 123455 7999999999999998888
Q ss_pred HHHHHHHHhCCCCEEEEEECCCCcccCCc---ccHHHHHHHHHHHHHH
Q 004816 665 RKIYKALKENGLPVALVEYEGEQHGFRKA---ENIKFTLEQQMVFFAR 709 (729)
Q Consensus 665 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~fl~~ 709 (729)
+++.+++. +++++++++++|+|... ....++++.+.+||++
T Consensus 230 ~~l~~~~~----~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 230 KKIGRTIP----ESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp HHHHHHST----TCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCC----CcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 77776654 56999999999998532 2334668888899875
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=167.41 Aligned_cols=206 Identities=12% Similarity=0.086 Sum_probs=134.0
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
..|+||++||.+.. ...|...++.|++ ||.|+++|+||.|........ .......+++.+.+..+++. ++.
T Consensus 19 ~~p~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~D~~G~G~S~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~ 89 (269)
T 4dnp_A 19 GERVLVLAHGFGTD--QSAWNRILPFFLR-DYRVVLYDLVCAGSVNPDFFD----FRRYTTLDPYVDDLLHILDA--LGI 89 (269)
T ss_dssp CSSEEEEECCTTCC--GGGGTTTGGGGTT-TCEEEEECCTTSTTSCGGGCC----TTTCSSSHHHHHHHHHHHHH--TTC
T ss_pred CCCEEEEEeCCCCc--HHHHHHHHHHHhC-CcEEEEEcCCCCCCCCCCCCC----ccccCcHHHHHHHHHHHHHh--cCC
Confidence 45899999998543 3456677788887 999999999986654331100 01111344554444444443 244
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH---------------Hhh----hcchhhhhhhhhhcC---
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM---------------LRA----ETHKFESRYIDNLVG--- 627 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~---------------~~~----~~~~~~~~~~~~~~~--- 627 (729)
+++.++|||+||++++.++. +|++++++|+.++...... +.. ....+...+......
T Consensus 90 ~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
T 4dnp_A 90 DCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADV 169 (269)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCSSC
T ss_pred CeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccCCC
Confidence 68999999999999999988 9999999999998543110 000 000000000000000
Q ss_pred --------------Ch-------hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCC
Q 004816 628 --------------SE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 686 (729)
Q Consensus 628 --------------~~-------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 686 (729)
.. ..+...+....+.++++|+|+++|++|..+|++.+.++.+.+.. .+++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 246 (269)
T 4dnp_A 170 PAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGG---KNTVHWLNIE 246 (269)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBCHHHHHHHHHHSSS---CEEEEEEEEE
T ss_pred hhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccCHHHHHHHHHhCCC---CceEEEeCCC
Confidence 00 11112344456778899999999999999999999888887753 3799999999
Q ss_pred CcccCCcccHHHHHHHHHHHHHH
Q 004816 687 QHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 687 gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
||.... +...++.+.+.+|+.+
T Consensus 247 gH~~~~-~~p~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 247 GHLPHL-SAPTLLAQELRRALSH 268 (269)
T ss_dssp SSCHHH-HCHHHHHHHHHHHHC-
T ss_pred CCCccc-cCHHHHHHHHHHHHhh
Confidence 997543 4566777788888765
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=185.63 Aligned_cols=259 Identities=18% Similarity=0.178 Sum_probs=171.7
Q ss_pred eEEEECCEEEEEECCCC-----cEEEEeCCCCCCCCeecCCCCCCCc---------------------eeeecceecCCC
Q 004816 149 AFRIFGDTVIFSNYKDQ-----RLYKHSIDSKDSSPLPITPDYGEPL---------------------VSYADGIFDPRF 202 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~-----~l~~~d~~~~~~~~~~lt~~~~~~~---------------------~~~~~~~~SPdG 202 (729)
.|+++++.|++....++ .||++|+++ ++.++++......+ ..+..++|||||
T Consensus 43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg 120 (741)
T 2ecf_A 43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS--GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA 120 (741)
T ss_dssp EECTTSSEEEEEECCSSCTTEEEEEEEETTT--CCEEEEECGGGTC--------------------CCEESCCCEECTTS
T ss_pred eEecCCCEEEEEeccCCCCcccEEEEEECCC--CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC
Confidence 45555668888876454 899999998 77776664311100 235788999999
Q ss_pred CEEEEEEeccCCCCCCcceEEEEEEcCCC---ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC
Q 004816 203 NRYVTVREDRRQDALNSTTEIVAIALNGQ---NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE 279 (729)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~l~~~dl~~g---~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~ 279 (729)
++|++... ..|+++|++++ +.++++........++|||||++|+|.+. .+||++|++
T Consensus 121 ~~l~~~~~----------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~---------~~i~~~d~~- 180 (741)
T 2ecf_A 121 QRLLFPLG----------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG---------RNLWVIDLA- 180 (741)
T ss_dssp SEEEEEET----------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET---------TEEEEEETT-
T ss_pred CEEEEEeC----------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC---------CcEEEEecC-
Confidence 99999875 46999999998 78888876667788999999999999872 259999998
Q ss_pred CCCeeeeEEecCCCC-------Ccc-----ccccCceeCCCCc-EEEEEecCC---------------------------
Q 004816 280 NGDVYKRVCVAGFDP-------TIV-----ESPTEPKWSSKGE-LFFVTDRKN--------------------------- 319 (729)
Q Consensus 280 ~g~~~~~~~~~~~~~-------~~~-----~~~~~~~wspDG~-l~~~~~~~~--------------------------- 319 (729)
+++. ..+...... +|. .....+.|||||+ |++.+.+..
T Consensus 181 ~g~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 258 (741)
T 2ecf_A 181 SGRQ--MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD 258 (741)
T ss_dssp TTEE--EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred CCCE--EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence 6654 223222210 000 0136789999999 888765411
Q ss_pred --CceEEEEEEcCC-CeEEEeecc---CccccCCc-----------------------------------------cccc
Q 004816 320 --GFWNLHKWIESN-NEVLAIYSL---DAEFSRPL-----------------------------------------WVFG 352 (729)
Q Consensus 320 --g~~~l~~~d~~~-g~~~~l~~~---~~~~~~~~-----------------------------------------w~~~ 352 (729)
+...|+++|+++ ++.+.+... ...+.... |...
T Consensus 259 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 338 (741)
T 2ecf_A 259 ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPL 338 (741)
T ss_dssp CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence 223788888887 765544311 00000111 1111
Q ss_pred CcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe---eeeCCEEEEEEeCCCC--CceEEEEE
Q 004816 353 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGASGVE--PSSVAKVT 427 (729)
Q Consensus 353 ~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~---~~~~~~~~~~~~~~~~--~~~ly~~d 427 (729)
...+.|.+ |++ ++++++++|..+||.++.+++ .+.|+.+.+.+..+ +++++.+++ .++.+. ...||.++
T Consensus 339 ~~~~~~sp---dg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~-~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 339 HNSLRFLD---DGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYF-RAGIESARESQIYAVP 412 (741)
T ss_dssp CSCCEECT---TSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEE-EECSSCTTCBEEEEEE
T ss_pred CCceEECC---CCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEE-EEeCCCCceEEEEEEE
Confidence 23455664 555 778888889899999998877 88898887777553 444445544 444444 34588888
Q ss_pred cCCCcceeee
Q 004816 428 LDDHKLKAVD 437 (729)
Q Consensus 428 ~~~~~~~~lt 437 (729)
.+++..++|+
T Consensus 413 ~~g~~~~~l~ 422 (741)
T 2ecf_A 413 LQGGQPQRLS 422 (741)
T ss_dssp TTCCCCEECC
T ss_pred cCCCCeeecc
Confidence 7776666665
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-17 Score=167.14 Aligned_cols=222 Identities=16% Similarity=0.136 Sum_probs=141.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+...+.. ++..+.++.+.+. ..|+||++||++.+. ..|...+..|++ ||.|+++|+||.+|....
T Consensus 46 ~~~~v~~--~~~~~~~~~~g~~----------~~~~vv~lHG~~~~~--~~~~~~~~~L~~-g~~vi~~D~~G~gG~s~~ 110 (306)
T 2r11_A 46 KSFYIST--RFGQTHVIASGPE----------DAPPLVLLHGALFSS--TMWYPNIADWSS-KYRTYAVDIIGDKNKSIP 110 (306)
T ss_dssp EEEEECC--TTEEEEEEEESCT----------TSCEEEEECCTTTCG--GGGTTTHHHHHH-HSEEEEECCTTSSSSCEE
T ss_pred ceEEEec--CCceEEEEeeCCC----------CCCeEEEECCCCCCH--HHHHHHHHHHhc-CCEEEEecCCCCCCCCCC
Confidence 4555555 5677876665331 247899999986443 346667777877 999999999987443221
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh----
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE---- 613 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~---- 613 (729)
. ......+++...+..+++. ++.+++.|+|||+||++++.++. +|++++++|+.+|..........
T Consensus 111 ~-------~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 181 (306)
T 2r11_A 111 E-------NVSGTRTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKY 181 (306)
T ss_dssp C-------SCCCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHHH
T ss_pred C-------CCCCCHHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHHH
Confidence 0 0112345555555555444 23478999999999999999988 99999999999987653211000
Q ss_pred -cc----hhhhhhhhhhcC----C-----------------hhhhh-------hcCcccccCCCCCCEEEEEeCCCCCCC
Q 004816 614 -TH----KFESRYIDNLVG----S-----------------EKDYY-------EKSPINFVDKFSCPIILFQGLEDKVVP 660 (729)
Q Consensus 614 -~~----~~~~~~~~~~~~----~-----------------~~~~~-------~~sp~~~~~~i~~PvL~i~G~~D~~vp 660 (729)
.. .....+...... . ...+. .......+.++++|+|+++|++|.++|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~ 261 (306)
T 2r11_A 182 ALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYD 261 (306)
T ss_dssp HHTTTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEEEEETTCCSSC
T ss_pred HhHHHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEEEEeCCCcccC
Confidence 00 000000000000 0 00000 011223456789999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 661 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 661 ~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++.+.++++.+. .++++++++++||.+. .+...++.+.+.+||+
T Consensus 262 ~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 305 (306)
T 2r11_A 262 PHSALHRASSFV---PDIEAEVIKNAGHVLS-MEQPTYVNERVMRFFN 305 (306)
T ss_dssp HHHHHHHHHHHS---TTCEEEEETTCCTTHH-HHSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC---CCCEEEEeCCCCCCCc-ccCHHHHHHHHHHHHh
Confidence 988876665542 2569999999999753 3445677788888875
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.8e-17 Score=165.21 Aligned_cols=205 Identities=15% Similarity=0.070 Sum_probs=136.5
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-----cchhhhHHHhhC----CcEEEE
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----ILNLSIQYWTSR----GWAFVD 526 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-----~~~~~~~~la~~----G~~v~~ 526 (729)
.+.+.+++.+. ++ .+.++++.|.+.. +.+++|+|+++||++.....+ .+...++.|+++ +|.|+.
T Consensus 39 g~~~~~~~~s~-~~-~~~~~vy~P~~~~----~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~ 112 (297)
T 1gkl_A 39 GRIVKETYTGI-NG-TKSLNVYLPYGYD----PNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVT 112 (297)
T ss_dssp CEEEEEEEEET-TE-EEEEEEEECTTCC----TTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEE
T ss_pred ceEEEEEEEcC-CC-EEEEEEEeCCCCC----CCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEE
Confidence 45677888886 54 8999999998732 256789999999986543322 123456667666 499999
Q ss_pred ecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC---------CCCCCcEEEEEcChHHHHHHHHHh-CCCcce
Q 004816 527 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---------KADEKRLCITGGSAGGYTTLAALA-FRDTFK 596 (729)
Q Consensus 527 ~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---------~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~ 596 (729)
+|++|+.+.+..|... ..+|+...++...... ..|+++++|+|+||||++|+.++. +|++|+
T Consensus 113 pd~~~~~~~~~~~~~~--------~~~~l~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~ 184 (297)
T 1gkl_A 113 PTFNGGNCTAQNFYQE--------FRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVA 184 (297)
T ss_dssp CCSCSTTCCTTTHHHH--------HHHTHHHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCC
T ss_pred ecCcCCccchHHHHHH--------HHHHHHHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhh
Confidence 9999754433333211 1344444444332211 036788999999999999999987 999999
Q ss_pred EEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC-
Q 004816 597 AGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG- 675 (729)
Q Consensus 597 a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g- 675 (729)
++++.+|...+...... ....+ ..+... ..+.....++++.+|++|.. ..++++++++|+++|
T Consensus 185 ~~v~~sg~~~~~~~~~~----~~~~~-------~~~~~~---~~~~~~~~~l~~~~G~~D~~--~~~~~~l~~~L~~~g~ 248 (297)
T 1gkl_A 185 YFMPLSGDYWYGNSPQD----KANSI-------AEAINR---SGLSKREYFVFAATGSEDIA--YANMNPQIEAMKALPH 248 (297)
T ss_dssp EEEEESCCCCBSSSHHH----HHHHH-------HHHHHH---HTCCTTSCEEEEEEETTCTT--HHHHHHHHHHHHTSTT
T ss_pred eeeEeccccccCCccch----hhhHH-------HHHHhh---ccCCcCcEEEEEEeCCCccc--chhHHHHHHHHHHcCC
Confidence 99999997654211000 00000 000000 11222345677779999976 568899999999998
Q ss_pred ---------CCEEEEEECCCCccc
Q 004816 676 ---------LPVALVEYEGEQHGF 690 (729)
Q Consensus 676 ---------~~~~~~~~~~~gH~~ 690 (729)
+++++.++||++|.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 249 FDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp CCBBSCTTTCCEEEEEETTCCSSH
T ss_pred ccccccccCCceEEEECCCCCcCH
Confidence 699999999999975
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-17 Score=163.24 Aligned_cols=217 Identities=15% Similarity=0.203 Sum_probs=134.1
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 542 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~ 542 (729)
+... +|.++++..+. +.|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+....
T Consensus 3 ~~~~-~g~~l~y~~~g------------~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~--- 64 (274)
T 1a8q_A 3 CTTR-DGVEIFYKDWG------------QGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVW--- 64 (274)
T ss_dssp EECT-TSCEEEEEEEC------------SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS---
T ss_pred EEcc-CCCEEEEEecC------------CCceEEEECCCcch--HHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCC---
Confidence 3444 78888765542 12579999998543 345677788899999999999999876543211
Q ss_pred hccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEEeccccCh------------
Q 004816 543 LLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADL------------ 607 (729)
Q Consensus 543 ~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-~~~~~a~v~~~~~~d~------------ 607 (729)
..+.. ...+|+.++++.+ +.+++.++||||||.+++.++. + |++++++|+.++....
T Consensus 65 --~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 136 (274)
T 1a8q_A 65 --DGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVP 136 (274)
T ss_dssp --SCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBC
T ss_pred --CCCcHHHHHHHHHHHHHHc------CCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccch
Confidence 11110 1134444444443 3468999999999999988665 5 9999999998864210
Q ss_pred -hHH---hhh----cchhhhhhhhhhc-----------------------CChh-------hhhhcCcccccCCCCCCEE
Q 004816 608 -SML---RAE----THKFESRYIDNLV-----------------------GSEK-------DYYEKSPINFVDKFSCPII 649 (729)
Q Consensus 608 -~~~---~~~----~~~~~~~~~~~~~-----------------------~~~~-------~~~~~sp~~~~~~i~~PvL 649 (729)
..+ ... ...+...+..... .... .+...+....+.++++|+|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l 216 (274)
T 1a8q_A 137 DEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTL 216 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEE
T ss_pred HHHHHHHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhcCCCCEE
Confidence 000 000 0000000000000 0000 0111222345678999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc-ccHHHHHHHHHHHHH
Q 004816 650 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA-ENIKFTLEQQMVFFA 708 (729)
Q Consensus 650 ~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~fl~ 708 (729)
+++|++|.++|++...+....+. .++++++++++||..... +...++.+.+.+|+.
T Consensus 217 ii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 217 VVHGDDDQVVPIDATGRKSAQII---PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp EEEETTCSSSCGGGTHHHHHHHS---TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred EEecCcCCCCCcHHHHHHHHhhC---CCceEEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 99999999999975544433322 256999999999986542 266788888888874
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=161.37 Aligned_cols=262 Identities=8% Similarity=0.044 Sum_probs=185.3
Q ss_pred EcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC----------
Q 004816 96 VDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD---------- 164 (729)
Q Consensus 96 ~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------- 164 (729)
+++ |+++||..... . ..||+++.+++ ..++|++.. ...+.++++.|+|+....
T Consensus 21 ~~~~g~~iy~~n~~d--~--~~ly~~~~dg~-~~~~l~~~~-----------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~ 84 (302)
T 3s25_A 21 FCESDGEVFFSNTND--N--GRLYAMNIDGS-NIHKLSNDT-----------AMYINADKNYVYYVRNNNQKITSQTFFS 84 (302)
T ss_dssp EEEETTEEEEEEGGG--T--TEEEEEETTSC-SCEEEEEEE-----------EEEEEECSSEEEEEEECC------CCSS
T ss_pred EEEeCCEEEEEeCCC--C--ceEEEEcCCCC-CCEEccCCc-----------eeeEEEcCCEEEEEECCCCcccccceec
Confidence 445 99999987532 2 35999988843 566666432 234678899999998754
Q ss_pred ---CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC
Q 004816 165 ---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD 241 (729)
Q Consensus 165 ---~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~ 241 (729)
..||++++++ ++.++|+.. ....|+|+|++|+|+...... ...||++++++.+.++|+....
T Consensus 85 ~n~~~Iy~i~~dg--~~~~~l~~~--------~~~~~s~~g~~Iy~~~~~~~~-----~~~Iy~~~~dGs~~~~lt~~~~ 149 (302)
T 3s25_A 85 YDRNSLCRIKRNG--HGSTVLDPD--------PCIYASLIGNYIYYLHYDTQT-----ATSLYRIRIDGEEKKKIKNHYL 149 (302)
T ss_dssp CCSEEEEEEETTS--CCCEEEECS--------CEEEEEEETTEEEEEEESSSS-----CEEEEEEETTSCCCEEEESSCC
T ss_pred cCCCeEEEEeCCC--CcceEeecC--------CccEEEEeCCEEEEEeecCCC-----CceEEEEECCCCCeEEEeCCCc
Confidence 3799999998 778888876 122689999999998621111 3689999999988889987643
Q ss_pred eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCC
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 320 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g 320 (729)
+.|+|||++|+|++. + ..+||+++++ ++.. .+++.+. . ..| ++|+|+ |+|+... .+
T Consensus 150 ----~~~~~~g~~iy~t~~---g----~~~Iy~~~l~-g~~~--~~l~~~~-----~--~~~-~~P~g~~iy~t~~~-~~ 206 (302)
T 3s25_A 150 ----FTCNTSDRYFYYNNP---K----NGQLYRYDTA-SQSE--ALFYDCN-----C--YKP-VVLDDTNVYYMDVN-RD 206 (302)
T ss_dssp ----CCSEEETTEEEEECT---T----TCCEEEEETT-TTEE--EEEECSC-----E--EEE-EEEETTEEEEEEGG-GT
T ss_pred ----eEeeEECCEEEEEeC---C----CceEEEEECC-CCCE--EEEeCCC-----c--cce-eeecCCEEEEEEcC-CC
Confidence 568999999999973 1 3459999987 4442 3444432 2 124 449998 8887654 33
Q ss_pred ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcce
Q 004816 321 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI 400 (729)
Q Consensus 321 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v 400 (729)
.+|++++++++..++|+... .+.|.+ +++.|||.....+ .+|++++++|...++|..+. +
T Consensus 207 -~~I~~~~ldG~~~~~Lt~~~----~~~~~~------------~g~~Iy~~~~~~~-~~i~~~~~DG~~r~~l~~~~--~ 266 (302)
T 3s25_A 207 -NAIVHVNINNPNPVVLTEAN----IEHYNV------------YGSLIFYQRGGDN-PALCVVKNDGTGFKELAKGE--F 266 (302)
T ss_dssp -TEEEEECSSSCCCEECSCSC----EEEEEE------------ETTEEEEEECSSS-CEEEEEETTSCCCEEEEESC--E
T ss_pred -cEEEEEECCCCCeEEEeCCC----cceEEE------------CCCEEEEEECCCC-cEEEEEECCCCccEEeeCCc--c
Confidence 78999999999888887433 122333 7888998865544 79999999998888887653 4
Q ss_pred EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcce
Q 004816 401 DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 434 (729)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~ 434 (729)
..+...++.+++...... .||++.+++...+
T Consensus 267 ~~i~i~~d~Iy~td~~~~---~i~~~~~dGs~~~ 297 (302)
T 3s25_A 267 CNINVTSQYVYFTDFVSN---KEYCTSTQNPDTI 297 (302)
T ss_dssp EEEEECSSEEEEEETTTC---CEEEEESSSCCSC
T ss_pred ceEEEeCCEEEEEECCCC---eEEEEECCCCCce
Confidence 456666777776654332 4899988776543
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.6e-17 Score=162.86 Aligned_cols=211 Identities=13% Similarity=0.065 Sum_probs=136.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++.... +.|+||++||.+.+. ..|...++.|++ ||.|+++|+||.|....... .
T Consensus 11 ~~~~~~y~~~g------------~~~~vv~~HG~~~~~--~~~~~~~~~L~~-~~~vi~~d~~G~G~s~~~~~------~ 69 (278)
T 3oos_A 11 PRGKFEYFLKG------------EGPPLCVTHLYSEYN--DNGNTFANPFTD-HYSVYLVNLKGCGNSDSAKN------D 69 (278)
T ss_dssp TTEEEEEEEEC------------SSSEEEECCSSEECC--TTCCTTTGGGGG-TSEEEEECCTTSTTSCCCSS------G
T ss_pred CCceEEEEecC------------CCCeEEEEcCCCcch--HHHHHHHHHhhc-CceEEEEcCCCCCCCCCCCC------c
Confidence 67788754431 236899999985443 345666777877 99999999998765433210 0
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh---------------
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR--------------- 611 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~--------------- 611 (729)
.....+|+.+.+..+++. ++.+++.++|||+||.+++.++. +|++++++|+.++........
T Consensus 70 ~~~~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (278)
T 3oos_A 70 SEYSMTETIKDLEAIREA--LYINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNR 147 (278)
T ss_dssp GGGSHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHH
T ss_pred ccCcHHHHHHHHHHHHHH--hCCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHH
Confidence 112345555555555554 24468999999999999999998 999999999999877611000
Q ss_pred -----hhc--c--------hhhhhh----------hhhhcCC----------hh-----hhhhcCcccccCCCCCCEEEE
Q 004816 612 -----AET--H--------KFESRY----------IDNLVGS----------EK-----DYYEKSPINFVDKFSCPIILF 651 (729)
Q Consensus 612 -----~~~--~--------~~~~~~----------~~~~~~~----------~~-----~~~~~sp~~~~~~i~~PvL~i 651 (729)
... . .....+ ....... .. .+...+....+.++++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i 227 (278)
T 3oos_A 148 IVSIMNALNDDSTVQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIY 227 (278)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTTCCSCEEEE
T ss_pred HHHHHHhhcccccCchHHHHHHHHHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhCCCCCEEEE
Confidence 000 0 000000 0000000 00 111223345577899999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHH
Q 004816 652 QGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 706 (729)
Q Consensus 652 ~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 706 (729)
+|++|..+|++.+.++.+.+. .+++++++++||.+.. +...++.+.+.+|
T Consensus 228 ~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-~~p~~~~~~i~~f 277 (278)
T 3oos_A 228 CGKHDVQCPYIFSCEIANLIP----NATLTKFEESNHNPFV-EEIDKFNQFVNDT 277 (278)
T ss_dssp EETTCSSSCHHHHHHHHHHST----TEEEEEETTCSSCHHH-HSHHHHHHHHHHT
T ss_pred EeccCCCCCHHHHHHHHhhCC----CcEEEEcCCcCCCccc-ccHHHHHHHHHhh
Confidence 999999999999988888774 5799999999997542 3445566666555
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=166.75 Aligned_cols=216 Identities=18% Similarity=0.258 Sum_probs=133.6
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 542 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~ 542 (729)
+... +|.++++..+. ..|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+....
T Consensus 3 ~~~~-~g~~l~y~~~g------------~~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~--- 64 (273)
T 1a8s_A 3 FTTR-DGTQIYYKDWG------------SGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPW--- 64 (273)
T ss_dssp EECT-TSCEEEEEEES------------CSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS---
T ss_pred EecC-CCcEEEEEEcC------------CCCEEEEECCCCCc--HHHHhhHHhhHhhCCcEEEEECCCCCCCCCCCC---
Confidence 4454 78888755442 12679999998543 345677788999999999999999876543211
Q ss_pred hccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEEeccccCh------------
Q 004816 543 LLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADL------------ 607 (729)
Q Consensus 543 ~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-~~~~~a~v~~~~~~d~------------ 607 (729)
..+.. ...+|+.++++++ +.+++.|+||||||.+++.++. + |++++++|+.++....
T Consensus 65 --~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 136 (273)
T 1a8s_A 65 --SGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLP 136 (273)
T ss_dssp --SCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBC
T ss_pred --CCCCHHHHHHHHHHHHHHh------CCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccCccccccCc
Confidence 11110 1134445444443 3468999999999999988665 5 9999999998863210
Q ss_pred -hHH---hhh----cchhhhhhhh-hhc-----------------------CChh-------hhhhcCcccccCCCCCCE
Q 004816 608 -SML---RAE----THKFESRYID-NLV-----------------------GSEK-------DYYEKSPINFVDKFSCPI 648 (729)
Q Consensus 608 -~~~---~~~----~~~~~~~~~~-~~~-----------------------~~~~-------~~~~~sp~~~~~~i~~Pv 648 (729)
..+ ... ...+...+.. ... .... .+...+....+.++++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 216 (273)
T 1a8s_A 137 MEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPT 216 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCE
T ss_pred HHHHHHHHHHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhhhhcCCCCE
Confidence 000 000 0000000000 000 0000 011122233467889999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
|+++|++|..+|++...+.+..+. .++++++++++||.+. .+...++.+.+.+|+.
T Consensus 217 lii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 217 LVVHGDADQVVPIEASGIASAALV---KGSTLKIYSGAPHGLT-DTHKDQLNADLLAFIK 272 (273)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHHS---TTCEEEEETTCCSCHH-HHTHHHHHHHHHHHHH
T ss_pred EEEECCCCccCChHHHHHHHHHhC---CCcEEEEeCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 999999999999875444433332 1458999999999764 3566788888899985
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=158.64 Aligned_cols=202 Identities=14% Similarity=0.083 Sum_probs=133.6
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh--CCcEEEEecCCCCCC------CchhHHHh
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGSTG------YGREFRER 542 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~--~G~~v~~~d~rGs~g------~g~~~~~~ 542 (729)
.+.+.++.|.+ +..++||++||.+. ....+..+++.+.. .++.++.|+-+-... .+..|...
T Consensus 24 ~l~y~ii~P~~--------~~~~~VI~LHG~G~--~~~dl~~l~~~l~~~~~~~~~i~P~Ap~~~~~~~~~~~~~~Wf~~ 93 (246)
T 4f21_A 24 AMNYELMEPAK--------QARFCVIWLHGLGA--DGHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMRAWYDI 93 (246)
T ss_dssp CCCEEEECCSS--------CCCEEEEEEEC--C--CCCCGGGGGGGCCSCCTTEEEEEECGGGSCTTTHHHHHHHSCTTC
T ss_pred CcCceEeCCCC--------cCCeEEEEEcCCCC--CHHHHHHHHHHhhhcCCCeEEEeCCCCccccccCCCCCccccccc
Confidence 35566788854 33579999999733 33445555565543 378888887431110 11222211
Q ss_pred hccC-------CCcccHHHHHH----HHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH
Q 004816 543 LLGR-------WGIVDVNDCCS----CATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 610 (729)
Q Consensus 543 ~~~~-------~~~~~~~D~~~----~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~ 610 (729)
.... .-...+.+... .++...+ ..+|++||++.|+|+||.+++.++. +|+.|+++++++|.......
T Consensus 94 ~~~~~~~~~~~~d~~~i~~~~~~i~~li~~~~~-~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~~~ 172 (246)
T 4f21_A 94 KSLDANSLNRVVDVEGINSSIAKVNKLIDSQVN-QGIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAWDN 172 (246)
T ss_dssp CCC---CGGGGSCCC-CHHHHHHHHHHHHHHHH-C-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTHHH
T ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHH-cCCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCcccc
Confidence 0000 00011222233 3333333 3589999999999999999999998 99999999999986533211
Q ss_pred hhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 611 RAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
... .. .....++|+|++||++|++||++.++++++.|+++|.++++++||+.||.+
T Consensus 173 ~~~--------------------~~----~~~~~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~~y~g~gH~i 228 (246)
T 4f21_A 173 FKG--------------------KI----TSINKGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYKHYVGMQHSV 228 (246)
T ss_dssp HST--------------------TC----CGGGTTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEESSCCSSC
T ss_pred ccc--------------------cc----cccccCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCcc
Confidence 000 00 011225799999999999999999999999999999999999999999987
Q ss_pred CCcccHHHHHHHHHHHHHHHhC
Q 004816 691 RKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 691 ~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
. .+.++.+.+||++.|+
T Consensus 229 ~-----~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 229 C-----MEEIKDISNFIAKTFK 245 (246)
T ss_dssp C-----HHHHHHHHHHHHHHTT
T ss_pred C-----HHHHHHHHHHHHHHhC
Confidence 5 2456789999999885
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=166.95 Aligned_cols=211 Identities=18% Similarity=0.188 Sum_probs=135.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+. . .|.||++||.+.+ ...|...++.|+++||.|+++|+||.|.+.... ..+
T Consensus 11 ~g~~l~y~~~g-----------~-g~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~-----~~~ 71 (277)
T 1brt_A 11 TSIDLYYEDHG-----------T-GQPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGFGQSSQPT-----TGY 71 (277)
T ss_dssp EEEEEEEEEEC-----------S-SSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS-----SCC
T ss_pred CCcEEEEEEcC-----------C-CCeEEEECCCCCc--HHHHHHHHHHHhhCCCEEEEeCCCCCCCCCCCC-----CCc
Confidence 67777755442 1 1348999998543 355777888999999999999999876543211 111
Q ss_pred Cc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC-cceEEEEeccccChh-------------HHh
Q 004816 548 GI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD-TFKAGASLYGVADLS-------------MLR 611 (729)
Q Consensus 548 ~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~-~~~a~v~~~~~~d~~-------------~~~ 611 (729)
.. ...+|+.++++.+ +.+++.++||||||.+++.++. +|+ +++++|+.++..... ...
T Consensus 72 ~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (277)
T 1brt_A 72 DYDTFAADLNTVLETL------DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFF 145 (277)
T ss_dssp SHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHH
T ss_pred cHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHH
Confidence 11 1245566666654 3468999999999999999888 898 999999998642110 000
Q ss_pred ----hh----cchhhhhhhhhhc------C---Chh---hh----------------h--hcCcccccCCCCCCEEEEEe
Q 004816 612 ----AE----THKFESRYIDNLV------G---SEK---DY----------------Y--EKSPINFVDKFSCPIILFQG 653 (729)
Q Consensus 612 ----~~----~~~~~~~~~~~~~------~---~~~---~~----------------~--~~sp~~~~~~i~~PvL~i~G 653 (729)
.. .......+..... . ..+ .+ . ..+....+.++++|+|+++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G 225 (277)
T 1brt_A 146 DGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHG 225 (277)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEE
T ss_pred HHHHHHHhcCchhhHHHHHHHHhhccccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcccCCCCeEEEec
Confidence 00 0000000000000 0 000 00 0 11222346778999999999
Q ss_pred CCCCCCChHHH-HHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 654 LEDKVVPPDQA-RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 654 ~~D~~vp~~~~-~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++|..+|++.+ .++.+.+. .+++++++++||... .+...++.+.+.+|+.
T Consensus 226 ~~D~~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 276 (277)
T 1brt_A 226 TGDRTLPIENTARVFHKALP----SAEYVEVEGAPHGLL-WTHAEEVNTALLAFLA 276 (277)
T ss_dssp TTCSSSCGGGTHHHHHHHCT----TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHH
T ss_pred CCCccCChHHHHHHHHHHCC----CCcEEEeCCCCcchh-hhCHHHHHHHHHHHHh
Confidence 99999999887 77777664 348999999999753 3456778888888885
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-17 Score=162.89 Aligned_cols=216 Identities=13% Similarity=0.090 Sum_probs=137.6
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 542 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~ 542 (729)
+... +|.++++..+.+. ..|+||++||.+.+ ...|...+..|++ +|.|+++|+||.|.+...
T Consensus 9 ~~~~-~g~~l~y~~~G~~----------~~p~lvl~hG~~~~--~~~w~~~~~~L~~-~~~vi~~D~rG~G~S~~~---- 70 (266)
T 3om8_A 9 LATS-DGASLAYRLDGAA----------EKPLLALSNSIGTT--LHMWDAQLPALTR-HFRVLRYDARGHGASSVP---- 70 (266)
T ss_dssp EECT-TSCEEEEEEESCT----------TSCEEEEECCTTCC--GGGGGGGHHHHHT-TCEEEEECCTTSTTSCCC----
T ss_pred Eecc-CCcEEEEEecCCC----------CCCEEEEeCCCccC--HHHHHHHHHHhhc-CcEEEEEcCCCCCCCCCC----
Confidence 4454 8999987766432 24789999997443 3456777777775 799999999986654321
Q ss_pred hccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh---HHh-------
Q 004816 543 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---MLR------- 611 (729)
Q Consensus 543 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~---~~~------- 611 (729)
... ...+++.+.+..+++.- ..+++.++||||||.+++.++. +|++++++|+.++..... .+.
T Consensus 71 -~~~---~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~ 144 (266)
T 3om8_A 71 -PGP---YTLARLGEDVLELLDAL--EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVL 144 (266)
T ss_dssp -CSC---CCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHH
T ss_pred -CCC---CCHHHHHHHHHHHHHHh--CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHH
Confidence 111 22333333333333331 3468999999999999999988 999999999987643210 000
Q ss_pred h--hcchhhhhhhhhhc------C---------------Chhh-------hhhcCcccccCCCCCCEEEEEeCCCCCCCh
Q 004816 612 A--ETHKFESRYIDNLV------G---------------SEKD-------YYEKSPINFVDKFSCPIILFQGLEDKVVPP 661 (729)
Q Consensus 612 ~--~~~~~~~~~~~~~~------~---------------~~~~-------~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~ 661 (729)
. .............+ . .... +...+....+.+|++|+|+++|++|.++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~G~~D~~~~~ 224 (266)
T 3om8_A 145 QAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAA 224 (266)
T ss_dssp HCSSSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEEETTCSSSCH
T ss_pred ccccHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEEeCCCCCCCH
Confidence 0 00000000000000 0 0000 111122234678999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 662 DQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 662 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+.++.+.+.+.. .++++++ +||.. ..+...++.+.+.+|+.
T Consensus 225 ~~~~~l~~~ip~----a~~~~i~-~gH~~-~~e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 225 SHGELIAASIAG----ARLVTLP-AVHLS-NVEFPQAFEGAVLSFLG 265 (266)
T ss_dssp HHHHHHHHHSTT----CEEEEES-CCSCH-HHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCC----CEEEEeC-CCCCc-cccCHHHHHHHHHHHhc
Confidence 999998888763 4888887 79964 44666778888888874
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=161.31 Aligned_cols=205 Identities=10% Similarity=0.116 Sum_probs=135.6
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
..|+||++||.+.+ ...|......|++ +|.|+++|+||.|.+.... ......+++.+.+..+++.. +.
T Consensus 14 ~~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l--~~ 81 (268)
T 3v48_A 14 DAPVVVLISGLGGS--GSYWLPQLAVLEQ-EYQVVCYDQRGTGNNPDTL-------AEDYSIAQMAAELHQALVAA--GI 81 (268)
T ss_dssp TCCEEEEECCTTCC--GGGGHHHHHHHHT-TSEEEECCCTTBTTBCCCC-------CTTCCHHHHHHHHHHHHHHT--TC
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHHHhh-cCeEEEECCCCCCCCCCCc-------cccCCHHHHHHHHHHHHHHc--CC
Confidence 45789999998544 3456777777755 6999999999766432210 01123555555555555542 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh-------------cchhh---------hhhhhh---
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-------------THKFE---------SRYIDN--- 624 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~-------------~~~~~---------~~~~~~--- 624 (729)
+++.++||||||.+++.++. +|++++++|+.++.......... ...+. ..+...
T Consensus 82 ~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
T 3v48_A 82 EHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAP 161 (268)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTTHH
T ss_pred CCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhcccc
Confidence 68999999999999999988 99999999998875432110000 00000 000000
Q ss_pred -h----------cCCh-------hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCC
Q 004816 625 -L----------VGSE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 686 (729)
Q Consensus 625 -~----------~~~~-------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 686 (729)
. .... ..+...+....+.+|++|+|+++|++|..+|++.+.++.+.+. ..++++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~l~~~~p----~~~~~~~~~~ 237 (268)
T 3v48_A 162 RLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALP----DSQKMVMPYG 237 (268)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSCTHHHHHHHHHCS----SEEEEEESSC
T ss_pred cchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccCHHHHHHHHHhCC----cCeEEEeCCC
Confidence 0 0000 0111122234567899999999999999999999988888765 5689999999
Q ss_pred CcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 687 QHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 687 gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
||.. ..+....+.+.+.+|+.+.+.
T Consensus 238 GH~~-~~e~p~~~~~~i~~fl~~~~~ 262 (268)
T 3v48_A 238 GHAC-NVTDPETFNALLLNGLASLLH 262 (268)
T ss_dssp CTTH-HHHCHHHHHHHHHHHHHHHHH
T ss_pred Ccch-hhcCHHHHHHHHHHHHHHhcc
Confidence 9964 446677888999999988653
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=177.14 Aligned_cols=238 Identities=17% Similarity=0.114 Sum_probs=151.2
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHh----hCCc---EEEEecCCCCCCC
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT----SRGW---AFVDVNYGGSTGY 535 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la----~~G~---~v~~~d~rGs~g~ 535 (729)
+... +|.++++..+.|.+... .++.++.|+||++||.+.. ...|...+..|+ ..|| .|+++|+||.
T Consensus 25 ~~~~-dg~~l~~~~~g~~~~~~-~~~~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G~--- 97 (398)
T 2y6u_A 25 LCAT-DRLELTYDVYTSAERQR-RSRTATRLNLVFLHGSGMS--KVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNH--- 97 (398)
T ss_dssp SSTT-CCCEEEEEEEEESCTTT-CCTTCEEEEEEEECCTTCC--GGGGGGGGGGSCCCBTTTTEEEEEEEEECCTTS---
T ss_pred ccCC-CceEEEEEEEecCCCCC-CCCCCCCCeEEEEcCCCCc--HHHHHHHHHHHHHhhhhcCcceeEEEEEcCCCC---
Confidence 4455 89999999998754100 0012334899999998544 345667778887 4489 9999999964
Q ss_pred chhHHHhhc---cCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH-
Q 004816 536 GREFRERLL---GRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM- 609 (729)
Q Consensus 536 g~~~~~~~~---~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~- 609 (729)
|.+...... ..+.. ...+|+.++++.+.....+++.+++|+||||||.+++.++. +|++++++|+.+|......
T Consensus 98 G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 177 (398)
T 2y6u_A 98 GDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKA 177 (398)
T ss_dssp HHHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCCC
T ss_pred CCCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEeccccccccc
Confidence 444322111 01110 12455555555443211234445999999999999999988 9999999999998655310
Q ss_pred ------------------Hhhh----c-chh-----hhhhhhh-h-cC--Chh---hhh---------------------
Q 004816 610 ------------------LRAE----T-HKF-----ESRYIDN-L-VG--SEK---DYY--------------------- 633 (729)
Q Consensus 610 ------------------~~~~----~-~~~-----~~~~~~~-~-~~--~~~---~~~--------------------- 633 (729)
+... . ..+ ...++.. . .. +++ .+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (398)
T 2y6u_A 178 IGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKM 257 (398)
T ss_dssp CSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEESS
T ss_pred cccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEecC
Confidence 0000 0 000 0000000 0 00 000 000
Q ss_pred ---------------hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHH
Q 004816 634 ---------------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKF 698 (729)
Q Consensus 634 ---------------~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~ 698 (729)
..+....+.++++|+|+++|++|.++|++.+.++++.+. .+++++++++||.+.. +...+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~~~~~~~l~~~~~----~~~~~~~~~~gH~~~~-e~p~~ 332 (398)
T 2y6u_A 258 EQAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTLQ----NYHLDVIPGGSHLVNV-EAPDL 332 (398)
T ss_dssp CHHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSCHHHHHHHHHHCS----SEEEEEETTCCTTHHH-HSHHH
T ss_pred CchhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCCHHHHHHHHHhCC----CceEEEeCCCCccchh-cCHHH
Confidence 001123467889999999999999999998888877764 5799999999997543 45678
Q ss_pred HHHHHHHHHHHHhC
Q 004816 699 TLEQQMVFFARVVG 712 (729)
Q Consensus 699 ~~~~~~~fl~~~l~ 712 (729)
+.+.+.+||.+++.
T Consensus 333 ~~~~i~~fl~~~~~ 346 (398)
T 2y6u_A 333 VIERINHHIHEFVL 346 (398)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999999886
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-16 Score=160.77 Aligned_cols=233 Identities=10% Similarity=0.023 Sum_probs=169.1
Q ss_pred CCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceEEeeeCC-
Q 004816 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQVLVSGS- 240 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~~lt~~~- 240 (729)
.++.|+++|+.+ ++.+++... ...+..++|||||++|++..+ ..|+++|+++ ++.+.+..+.
T Consensus 20 ~~~~i~~~d~~~--~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~----------~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 20 MRSSIEIFNIRT--RKMRVVWQT----PELFEAPNWSPDGKYLLLNSE----------GLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp CCEEEEEEETTT--TEEEEEEEE----SSCCEEEEECTTSSEEEEEET----------TEEEEEESSSCCSCEECCCTTC
T ss_pred cceeEEEEeCCC--CceeeeccC----CcceEeeEECCCCCEEEEEcC----------CeEEEEeCCCCCCceEeccccc
Confidence 345899999987 776666654 244678899999999888642 4699999999 8888877544
Q ss_pred -CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecC
Q 004816 241 -DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 318 (729)
Q Consensus 241 -~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~ 318 (729)
.....++|||||++|++...+.. ....||.+++. ++.. ..+.... ....+.|+|||+ +++....
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~----~~~~l~~~~~~-~~~~---~~~~~~~-----~~~~~~~spdg~~l~~~~~~- 149 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEF----GKSAIYLLPST-GGTP---RLMTKNL-----PSYWHGWSPDGKSFTYCGIR- 149 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTT----SSCEEEEEETT-CCCC---EECCSSS-----SEEEEEECTTSSEEEEEEEE-
T ss_pred cccccceEECCCCCEEEEEEeCCC----CcceEEEEECC-CCce---EEeecCC-----CccceEECCCCCEEEEEECC-
Confidence 45667899999999999884432 24679999987 5543 2333322 245678999999 7777766
Q ss_pred CCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc
Q 004816 319 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 319 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
.+...||.++..+++.+.+...........|++ +++.+++.+..++..+||.++..++..+.++....
T Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~------------dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 217 (297)
T 2ojh_A 150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP------------DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY 217 (297)
T ss_dssp TTEEEEEEEETTTCCEEECCCSSSCEEEEEECT------------TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred CCceEEEEEECCCCcceEcccCCCccccceECC------------CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc
Confidence 677899999998888887775544444555654 77788888777888999999988888888887665
Q ss_pred ceEEe--eeeCCEEEEEEeCCC-------CCceEEEEEcCCCcceeee
Q 004816 399 DIDNI--TLGNDCLFVEGASGV-------EPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 399 ~v~~~--~~~~~~~~~~~~~~~-------~~~~ly~~d~~~~~~~~lt 437 (729)
.+..+ +++++.+++...... ....|+++++++++.+++.
T Consensus 218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 55555 445555555554332 2256999999988766554
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=160.04 Aligned_cols=210 Identities=14% Similarity=0.087 Sum_probs=138.6
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 542 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~ 542 (729)
+... +|.++.+..+.+ .|.||++||.+.+. ..|...++.|+ +||.|+++|+||.|.....
T Consensus 7 ~~~~-~g~~l~~~~~g~------------~~~vv~lHG~~~~~--~~~~~~~~~l~-~~~~vi~~d~~G~G~S~~~---- 66 (262)
T 3r0v_A 7 VPSS-DGTPIAFERSGS------------GPPVVLVGGALSTR--AGGAPLAERLA-PHFTVICYDRRGRGDSGDT---- 66 (262)
T ss_dssp EECT-TSCEEEEEEEEC------------SSEEEEECCTTCCG--GGGHHHHHHHT-TTSEEEEECCTTSTTCCCC----
T ss_pred EEcC-CCcEEEEEEcCC------------CCcEEEECCCCcCh--HHHHHHHHHHh-cCcEEEEEecCCCcCCCCC----
Confidence 4444 888888665421 36799999985443 45677778887 8999999999987654332
Q ss_pred hccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH--------hhh
Q 004816 543 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML--------RAE 613 (729)
Q Consensus 543 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~--------~~~ 613 (729)
. ....+|+...+..+++. ++ +++.++|||+||.+++.++. +| +++++|+.+|....... ...
T Consensus 67 --~---~~~~~~~~~~~~~~~~~--l~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 137 (262)
T 3r0v_A 67 --P---PYAVEREIEDLAAIIDA--AG-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVPPDYQTR 137 (262)
T ss_dssp --S---SCCHHHHHHHHHHHHHH--TT-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCCTTHHHH
T ss_pred --C---CCCHHHHHHHHHHHHHh--cC-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhhhHHHHH
Confidence 0 12345555444444444 23 78999999999999999998 88 99999999886543211 000
Q ss_pred ---------cchhhhhhhhhhcC-Ch---hhh------------------------hhcCcccccCCCCCCEEEEEeCCC
Q 004816 614 ---------THKFESRYIDNLVG-SE---KDY------------------------YEKSPINFVDKFSCPIILFQGLED 656 (729)
Q Consensus 614 ---------~~~~~~~~~~~~~~-~~---~~~------------------------~~~sp~~~~~~i~~PvL~i~G~~D 656 (729)
.......+.....+ .. +.+ ....+...+.++++|+|+++|++|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D 217 (262)
T 3r0v_A 138 LDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIPTLVMDGGAS 217 (262)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTSCCCHHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSCEEEEECTTC
T ss_pred HHHHhhccchhhHHHHHhhcccCCCHHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCCEEEEeecCC
Confidence 00000011111000 00 000 011234557788999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 657 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 657 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
..+|++.+.++.+.+. .+++++++++|| + +...++.+.+.+|+++
T Consensus 218 ~~~~~~~~~~~~~~~~----~~~~~~~~~~gH-~---~~p~~~~~~i~~fl~~ 262 (262)
T 3r0v_A 218 PAWIRHTAQELADTIP----NARYVTLENQTH-T---VAPDAIAPVLVEFFTR 262 (262)
T ss_dssp CHHHHHHHHHHHHHST----TEEEEECCCSSS-S---CCHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHhCC----CCeEEEecCCCc-c---cCHHHHHHHHHHHHhC
Confidence 9999998888887764 469999999999 3 3556788888888753
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=162.46 Aligned_cols=206 Identities=11% Similarity=0.058 Sum_probs=135.3
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
++..+.. +|.++.+..+.+.+ .|+||++||.+.+ ...|...+..|+++||.|+++|+||.|.....
T Consensus 5 ~~~~~~~--~g~~l~~~~~g~~~----------~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~ 70 (286)
T 3qit_A 5 EEKFLEF--GGNQICLCSWGSPE----------HPVVLCIHGILEQ--GLAWQEVALPLAAQGYRVVAPDLFGHGRSSHL 70 (286)
T ss_dssp EEEEEEE--TTEEEEEEEESCTT----------SCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC
T ss_pred hhheeec--CCceEEEeecCCCC----------CCEEEEECCCCcc--cchHHHHHHHhhhcCeEEEEECCCCCCCCCCC
Confidence 4445555 79999988886532 4789999998544 34567788999999999999999987654332
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh------
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR------ 611 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~------ 611 (729)
.. ......++..+.+..+++. ++.+++.++|||+||++++.++. +|++++++|+.++........
T Consensus 71 ~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 142 (286)
T 3qit_A 71 EM------VTSYSSLTFLAQIDRVIQE--LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVN 142 (286)
T ss_dssp SS------GGGCSHHHHHHHHHHHHHH--SCSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---CCHHH
T ss_pred CC------CCCcCHHHHHHHHHHHHHh--cCCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccchhhhH
Confidence 10 0112345555555555554 24478999999999999999998 999999999999865422111
Q ss_pred ---hh------c--------------------chhhhh----hhhhhcC----------Chh-------hh-----hhcC
Q 004816 612 ---AE------T--------------------HKFESR----YIDNLVG----------SEK-------DY-----YEKS 636 (729)
Q Consensus 612 ---~~------~--------------------~~~~~~----~~~~~~~----------~~~-------~~-----~~~s 636 (729)
.. . ...... +...... +.. .+ ...+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (286)
T 3qit_A 143 QLTTCLDYLSSTPQHPIFPDVATAASRLRQAIPSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPGGRSQ 222 (286)
T ss_dssp HHHHHHHHHTCCCCCCCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTTHHHH
T ss_pred HHHHHHHHHhccccccccccHHHHHHHhhcCCcccCHHHHHHHhhccccccccceeeeechhhhccccccccccccchhH
Confidence 00 0 000000 0000000 000 00 1112
Q ss_pred cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC
Q 004816 637 PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691 (729)
Q Consensus 637 p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 691 (729)
....+.++++|+|+++|++|.++|++...++.+.+. .++++++++ ||.+.
T Consensus 223 ~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~g-gH~~~ 272 (286)
T 3qit_A 223 YLEMLKSIQVPTTLVYGDSSKLNRPEDLQQQKMTMT----QAKRVFLSG-GHNLH 272 (286)
T ss_dssp HHHHHHHCCSCEEEEEETTCCSSCHHHHHHHHHHST----TSEEEEESS-SSCHH
T ss_pred HHHHHhccCCCeEEEEeCCCcccCHHHHHHHHHHCC----CCeEEEeeC-CchHh
Confidence 223356789999999999999999999888877765 348999999 99753
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-17 Score=161.52 Aligned_cols=204 Identities=15% Similarity=0.096 Sum_probs=133.4
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|+||++||.+.+ ...|...++.|+++||.|+++|+||.|.+..... .....++....+..+++.... .++
T Consensus 5 ~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~l~~~l~~l~~-~~~ 74 (258)
T 3dqz_A 5 HHFVLVHNAYHG--AWIWYKLKPLLESAGHRVTAVELAASGIDPRPIQ-------AVETVDEYSKPLIETLKSLPE-NEE 74 (258)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSSCGG-------GCCSHHHHHHHHHHHHHTSCT-TCC
T ss_pred CcEEEECCCCCc--cccHHHHHHHHHhCCCEEEEecCCCCcCCCCCCC-------ccccHHHhHHHHHHHHHHhcc-cCc
Confidence 889999998544 3456778899999999999999998765443211 112344444444444444222 378
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH-----Hhhhc----chh--------------------hhhhh
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-----LRAET----HKF--------------------ESRYI 622 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~-----~~~~~----~~~--------------------~~~~~ 622 (729)
+.|+|||+||.+++.++. +|++++++|+.++...... ..... ..+ .....
T Consensus 75 ~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3dqz_A 75 VILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKFM 154 (258)
T ss_dssp EEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHHHH
Confidence 999999999999999998 9999999999988542110 00000 000 00000
Q ss_pred hh-hcC--Chh-----------------hhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 623 DN-LVG--SEK-----------------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 623 ~~-~~~--~~~-----------------~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
.. ... ..+ .+............++|+|+++|++|..+|++.+.++.+.+.. +++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~ 230 (258)
T 3dqz_A 155 KARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNV----SKVYE 230 (258)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHSCC----SCEEE
T ss_pred HHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeCHHHHHHHHHhCCc----ccEEE
Confidence 00 000 000 0000122222233368999999999999999999888887753 38999
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
++++||.... +...++.+.+.+|+++++
T Consensus 231 ~~~~gH~~~~-~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 231 IDGGDHMVML-SKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp ETTCCSCHHH-HSHHHHHHHHHHHHHHTC
T ss_pred cCCCCCchhh-cChHHHHHHHHHHHHHhC
Confidence 9999997543 567788899999998874
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=179.30 Aligned_cols=232 Identities=13% Similarity=0.064 Sum_probs=151.1
Q ss_pred CCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCC
Q 004816 454 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 454 ~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~ 533 (729)
.....+...+... +|.++++.... +.|+||++||++.+. ..|...++.|+++||.|+++|+||.|
T Consensus 233 ~~~~~~~~~~~~~-dg~~l~~~~~g------------~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~D~~G~G 297 (555)
T 3i28_A 233 NPSDMSHGYVTVK-PRVRLHFVELG------------SGPAVCLCHGFPESW--YSWRYQIPALAQAGYRVLAMDMKGYG 297 (555)
T ss_dssp CGGGSEEEEEEEE-TTEEEEEEEEC------------SSSEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTST
T ss_pred CCcccceeEEEeC-CCcEEEEEEcC------------CCCEEEEEeCCCCch--hHHHHHHHHHHhCCCEEEEecCCCCC
Confidence 3445566777776 89999865542 237899999985443 45677888999999999999999876
Q ss_pred CCchhHHHhhccCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH--
Q 004816 534 GYGREFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-- 609 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~-- 609 (729)
.+.... ....+... ..+|+.++++.+ +.+++.++|||+||.+++.++. +|++++++|+.++......
T Consensus 298 ~S~~~~---~~~~~~~~~~~~d~~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 368 (555)
T 3i28_A 298 ESSAPP---EIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPN 368 (555)
T ss_dssp TSCCCS---CGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCTT
T ss_pred CCCCCC---CcccccHHHHHHHHHHHHHHc------CCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCCCCCCcc
Confidence 543321 00111111 134555555554 3468999999999999999998 9999999999887532100
Q ss_pred ------H-----------hhhc-------chhhhhhhhhhcC--------------------------------Ch---h
Q 004816 610 ------L-----------RAET-------HKFESRYIDNLVG--------------------------------SE---K 630 (729)
Q Consensus 610 ------~-----------~~~~-------~~~~~~~~~~~~~--------------------------------~~---~ 630 (729)
. .... ............. .. .
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (555)
T 3i28_A 369 MSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQ 448 (555)
T ss_dssp SCHHHHHHTCGGGHHHHHHHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTTCCHHHHH
T ss_pred cchHHHHhcCCccchhHHhhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCccccccccccCHHHHH
Confidence 0 0000 0000000000000 00 0
Q ss_pred hh----------------------hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 631 DY----------------------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 631 ~~----------------------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
.| ...+....+.++++|+|+++|++|.++|++.+..+++.+. .+++++++++||
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH 524 (555)
T 3i28_A 449 FYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIP----HLKRGHIEDCGH 524 (555)
T ss_dssp HHHHHHTTTTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTCT----TCEEEEETTCCS
T ss_pred HHHHHHhcccchhHHHHHHhccccchhhccccccccccCEEEEEeCCCCCcCHHHHHHHHhhCC----CceEEEeCCCCC
Confidence 00 0011223356889999999999999999988888776664 458999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHHHhCCC
Q 004816 689 GFRKAENIKFTLEQQMVFFARVVGHF 714 (729)
Q Consensus 689 ~~~~~~~~~~~~~~~~~fl~~~l~~~ 714 (729)
.... +...++.+.+.+||.+.....
T Consensus 525 ~~~~-e~p~~~~~~i~~fl~~~~~~~ 549 (555)
T 3i28_A 525 WTQM-DKPTEVNQILIKWLDSDARNP 549 (555)
T ss_dssp CHHH-HSHHHHHHHHHHHHHHHTCC-
T ss_pred Ccch-hCHHHHHHHHHHHHHhccCCC
Confidence 7533 556788899999999988743
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=166.49 Aligned_cols=229 Identities=15% Similarity=0.168 Sum_probs=141.0
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCCCCchh
Q 004816 460 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 460 ~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~~ 538 (729)
...+.. +|.++++..+.+.+. +.+.+.||++||++++.. .|...+..|+. .||.|+++|+||.|.+...
T Consensus 30 ~~~v~~--~g~~l~y~~~G~~~~------~~~g~plvllHG~~~~~~--~w~~~~~~l~~~~~~~Via~D~rG~G~S~~~ 99 (330)
T 3nwo_A 30 SRTVPF--GDHETWVQVTTPENA------QPHALPLIVLHGGPGMAH--NYVANIAALADETGRTVIHYDQVGCGNSTHL 99 (330)
T ss_dssp EEEEEE--TTEEEEEEEECCSSC------CTTCCCEEEECCTTTCCS--GGGGGGGGHHHHHTCCEEEECCTTSTTSCCC
T ss_pred ceeEee--cCcEEEEEEecCccC------CCCCCcEEEECCCCCCch--hHHHHHHHhccccCcEEEEECCCCCCCCCCC
Confidence 334444 789999888876320 111124788899865543 34445566765 6999999999987655321
Q ss_pred HHHhhccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh---
Q 004816 539 FRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE--- 613 (729)
Q Consensus 539 ~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~--- 613 (729)
-.. ....+.. ...+|+.+.++.+ +.+++.|+||||||++++.++. +|++++++|+.++......+...
T Consensus 100 ~~~-~~~~~~~~~~a~dl~~ll~~l------g~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~ 172 (330)
T 3nwo_A 100 PDA-PADFWTPQLFVDEFHAVCTAL------GIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAGD 172 (330)
T ss_dssp TTS-CGGGCCHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHHHHHHHH
T ss_pred CCC-ccccccHHHHHHHHHHHHHHc------CCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHHHHHHHH
Confidence 000 0001111 1245666666655 2368999999999999999998 99999999998875443211000
Q ss_pred ----cc-------------------hh---hhhhhhhhcC------------------Chhhh---------------hh
Q 004816 614 ----TH-------------------KF---ESRYIDNLVG------------------SEKDY---------------YE 634 (729)
Q Consensus 614 ----~~-------------------~~---~~~~~~~~~~------------------~~~~~---------------~~ 634 (729)
.. .+ ...+...... ++..| ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
T 3nwo_A 173 LRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHTMNGPNEFHVVGTLGD 252 (330)
T ss_dssp HHHHSCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHSCHHHHHHTCSCSSSCCSGGGG
T ss_pred HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccccCCCHHHHHHHHhhccchhhhhcccCchhhhhhccccC
Confidence 00 00 0000000000 00001 01
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 635 KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 635 ~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
.+....+.+|++|+|+++|++|.++| ..+.++.+.+. .++++++|++||... .+...++.+.+.+||.++-
T Consensus 253 ~~~~~~l~~i~~P~Lvi~G~~D~~~p-~~~~~~~~~ip----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~FL~~~~ 323 (330)
T 3nwo_A 253 WSVIDRLPDVTAPVLVIAGEHDEATP-KTWQPFVDHIP----DVRSHVFPGTSHCTH-LEKPEEFRAVVAQFLHQHD 323 (330)
T ss_dssp CBCGGGGGGCCSCEEEEEETTCSSCH-HHHHHHHHHCS----SEEEEEETTCCTTHH-HHSHHHHHHHHHHHHHHHH
T ss_pred CchhhhcccCCCCeEEEeeCCCccCh-HHHHHHHHhCC----CCcEEEeCCCCCchh-hcCHHHHHHHHHHHHHhcc
Confidence 12234467789999999999999775 45666655543 679999999999653 3566788899999998864
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=171.42 Aligned_cols=251 Identities=11% Similarity=0.124 Sum_probs=168.6
Q ss_pred CceEEEECCEEEEEECCC--CcEEEEeCCCCCCCCeecCCCCCCCceee-ecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 147 GGAFRIFGDTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSY-ADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~~~~~~~lt~~~~~~~~~~-~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
...|+++++.|+|....+ .+||++++++ ++.++++... ... ..+.|||||++|+|+..+ .+|
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~--~~~~~l~~~~----~~~~~~~~~spdg~~l~~~~~~---------~~l 104 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLET--QQAVQLTEGK----GDNTFGGFISTDERAFFYVKNE---------LNL 104 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTT--TEEEECCCSS----CBCTTTCEECTTSSEEEEEETT---------TEE
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECCC--CcEEEeecCC----CCccccceECCCCCEEEEEEcC---------CcE
Confidence 345777788899987653 3899999998 8888888652 222 337899999999999764 369
Q ss_pred EEEEcCCCceEEeeeCCC-eeee-------------------eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe
Q 004816 224 VAIALNGQNIQVLVSGSD-FYAF-------------------PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV 283 (729)
Q Consensus 224 ~~~dl~~g~~~~lt~~~~-~~~~-------------------~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~ 283 (729)
|++++++++.++++.... +... +.|||||++|++....... ....|+++|++ +++.
T Consensus 105 ~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~---~~~~l~~~d~~-~g~~ 180 (396)
T 3c5m_A 105 MKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN---PTCRLIKVDIE-TGEL 180 (396)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC---CCEEEEEEETT-TCCE
T ss_pred EEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC---CcceEEEEECC-CCcE
Confidence 999999999888876332 2111 4677777776655311111 34679999998 6765
Q ss_pred eeeEEecCCCCCccccccCceeCC-CCc-EEEEEecCCC---ceEEEEEEcCCCeEEEeeccC--ccccCCcccccCcce
Q 004816 284 YKRVCVAGFDPTIVESPTEPKWSS-KGE-LFFVTDRKNG---FWNLHKWIESNNEVLAIYSLD--AEFSRPLWVFGINSY 356 (729)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~wsp-DG~-l~~~~~~~~g---~~~l~~~d~~~g~~~~l~~~~--~~~~~~~w~~~~~~~ 356 (729)
.. +... . ..+..+.|+| ||+ |+|.+.. .. ...|+++|+++++.+.++... ..+..+.|++
T Consensus 181 ~~--~~~~-~----~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp----- 247 (396)
T 3c5m_A 181 EV--IHQD-T----AWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP----- 247 (396)
T ss_dssp EE--EEEE-S----SCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-----
T ss_pred Ee--eccC-C----cccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-----
Confidence 32 3322 2 3456789999 888 8888753 22 167999999888877776421 1233345554
Q ss_pred eeeeecCCCCEEEEEEEECCeEE--EEEEECCCCceEeeccCCcceEEeee-eCCEEEEEEeCC-------------CCC
Q 004816 357 EIIQSHGEKNLIACSYRQNGRSY--LGILDDFGHSLSLLDIPFTDIDNITL-GNDCLFVEGASG-------------VEP 420 (729)
Q Consensus 357 ~~l~~~~~~~~l~~~s~~~g~~~--ly~~d~~~g~~~~lt~~~~~v~~~~~-~~~~~~~~~~~~-------------~~~ 420 (729)
+++.|++.+...+... ||++++++++.+.++........+++ +++ ++++.++. ...
T Consensus 248 -------dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 248 -------DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGS-LMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp -------TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSS-EEEEEECCC----------CCCCC
T ss_pred -------CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCc-eEEEecCCcceeeccccccccCCC
Confidence 7888888888776644 99999999988877643221122245 555 55544432 123
Q ss_pred ceEEEEEcCCCcceeee
Q 004816 421 SSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 421 ~~ly~~d~~~~~~~~lt 437 (729)
..||++|+++++.++|+
T Consensus 320 ~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp CEEEEEETTTTBCCEEE
T ss_pred CcEEEEecccCceEEcc
Confidence 67999999998876665
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=164.14 Aligned_cols=207 Identities=12% Similarity=0.120 Sum_probs=135.9
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|+||++||.+.. ...|...++.|++ ||.|+++|+||.|........ .......++....+..+++.. +.+
T Consensus 28 ~~~vv~lHG~~~~--~~~~~~~~~~l~~-g~~v~~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~ 98 (282)
T 3qvm_A 28 EKTVLLAHGFGCD--QNMWRFMLPELEK-QFTVIVFDYVGSGQSDLESFS----TKRYSSLEGYAKDVEEILVAL--DLV 98 (282)
T ss_dssp SCEEEEECCTTCC--GGGGTTTHHHHHT-TSEEEECCCTTSTTSCGGGCC----TTGGGSHHHHHHHHHHHHHHT--TCC
T ss_pred CCeEEEECCCCCC--cchHHHHHHHHhc-CceEEEEecCCCCCCCCCCCC----ccccccHHHHHHHHHHHHHHc--CCC
Confidence 3899999997544 3456677788877 999999999987665433110 001113455555454444442 347
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh----------------h----hcchhhhhhhhhhcC---
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR----------------A----ETHKFESRYIDNLVG--- 627 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~----------------~----~~~~~~~~~~~~~~~--- 627 (729)
++.++|||+||.+++.++. +|++++++|+.+|........ . ....+...+......
T Consensus 99 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T 3qvm_A 99 NVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASH 178 (282)
T ss_dssp SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTS
T ss_pred ceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCcc
Confidence 9999999999999999988 899999999999865321100 0 000000000000000
Q ss_pred ---------------Ch-------hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 628 ---------------SE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 628 ---------------~~-------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
.. ..+...+....+.++++|+|+++|++|..+|++.+.++.+.+. .++++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~ 254 (282)
T 3qvm_A 179 SSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENIP----NSQLELIQA 254 (282)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCCHHHHHHHHHHSS----SEEEEEEEE
T ss_pred chhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCCHHHHHHHHHhCC----CCcEEEecC
Confidence 00 0111123335567889999999999999999999988887764 569999999
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 686 EQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 686 ~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+||.+.. +...++.+.+.+|+.++..
T Consensus 255 ~gH~~~~-~~~~~~~~~i~~fl~~~~~ 280 (282)
T 3qvm_A 255 EGHCLHM-TDAGLITPLLIHFIQNNQT 280 (282)
T ss_dssp ESSCHHH-HCHHHHHHHHHHHHHHC--
T ss_pred CCCcccc-cCHHHHHHHHHHHHHhcCC
Confidence 9998643 4567888899999987643
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=161.86 Aligned_cols=218 Identities=17% Similarity=0.189 Sum_probs=135.9
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+.+ +.+.|.||++||++++... .+.. ...++++||.|+++|+||.|.+.... ...+
T Consensus 13 ~g~~l~~~~~g~---------~~~~~~vvllHG~~~~~~~-~~~~-~~~l~~~g~~vi~~D~~G~G~S~~~~----~~~~ 77 (293)
T 1mtz_A 13 NGIYIYYKLCKA---------PEEKAKLMTMHGGPGMSHD-YLLS-LRDMTKEGITVLFYDQFGCGRSEEPD----QSKF 77 (293)
T ss_dssp TTEEEEEEEECC---------SSCSEEEEEECCTTTCCSG-GGGG-GGGGGGGTEEEEEECCTTSTTSCCCC----GGGC
T ss_pred CCEEEEEEEECC---------CCCCCeEEEEeCCCCcchh-HHHH-HHHHHhcCcEEEEecCCCCccCCCCC----CCcc
Confidence 688887666543 1123679999997544322 2333 34456789999999999876543321 0011
Q ss_pred Cc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh-------cch--
Q 004816 548 GI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-------THK-- 616 (729)
Q Consensus 548 ~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~-------~~~-- 616 (729)
.. ...+|+.++++.+. +.+++.|+||||||.+++.++. +|++++++|+.++......+... ...
T Consensus 78 ~~~~~~~dl~~~~~~l~-----~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (293)
T 1mtz_A 78 TIDYGVEEAEALRSKLF-----GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKY 152 (293)
T ss_dssp SHHHHHHHHHHHHHHHH-----TTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHH
T ss_pred cHHHHHHHHHHHHHHhc-----CCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHHHHHHHhcCHHH
Confidence 11 11455555555542 2258999999999999999988 89999999999987653211100 000
Q ss_pred -----------------hh---hhhhhhhc----CChh-------------hhh---------------hcCcccccCCC
Q 004816 617 -----------------FE---SRYIDNLV----GSEK-------------DYY---------------EKSPINFVDKF 644 (729)
Q Consensus 617 -----------------~~---~~~~~~~~----~~~~-------------~~~---------------~~sp~~~~~~i 644 (729)
+. ..+..... ..++ .+. ..+....+.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 232 (293)
T 1mtz_A 153 RDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAI 232 (293)
T ss_dssp HHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGC
T ss_pred HHHHHHhhccCCcChHHHHHHHHHHHHhhcccccCchHHHHHhHhhhccchhhhhccCcceecccccccCCChhhhhccC
Confidence 00 00000000 0000 000 01122345678
Q ss_pred CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 645 ~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
++|+|+++|++| .+++..+.++.+.+. .+++++++++||.... +...++.+.+.+|+.+++
T Consensus 233 ~~P~lii~G~~D-~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~~~l 293 (293)
T 1mtz_A 233 KIPTLITVGEYD-EVTPNVARVIHEKIA----GSELHVFRDCSHLTMW-EDREGYNKLLSDFILKHL 293 (293)
T ss_dssp CSCEEEEEETTC-SSCHHHHHHHHHHST----TCEEEEETTCCSCHHH-HSHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeeCCC-CCCHHHHHHHHHhCC----CceEEEeCCCCCCccc-cCHHHHHHHHHHHHHhcC
Confidence 899999999999 778888887777664 4589999999997533 456788888999997653
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=9e-17 Score=154.23 Aligned_cols=181 Identities=12% Similarity=0.030 Sum_probs=122.8
Q ss_pred CCCEEEEEcCCCCCCc-cccchh-hhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 491 KPPLLVKSHGGPTSEA-RGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~-~~~~~~-~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
+.|+||++||.+++.. ...|.. ....|+++ ||.|+++|+||... .++...++.+.+...
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~------------------~~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT------------------ARESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT------------------CCHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc------------------ccHHHHHHHHHHHhC
Confidence 4589999999865532 233443 67888888 99999999997321 123333444444422
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCC
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC 646 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~ 646 (729)
+ .+++.++|||+||.+++.++. +| ++++|+.+|......... .........+ .....+..+.+
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~-------~~~~~~~~~~------~~~~~~~~~~~ 128 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDEN-------ERASGYFTRP------WQWEKIKANCP 128 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCHH-------HHHTSTTSSC------CCHHHHHHHCS
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchhh-------hHHHhhhccc------ccHHHHHhhCC
Confidence 2 378999999999999999998 77 999999998764211000 0000011011 11122334567
Q ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 647 PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
|+|+++|++|.++|++.+.++++.+ . .++++++++||.+.. +. .+.+..+++|+++...
T Consensus 129 p~lii~G~~D~~vp~~~~~~~~~~~-~----~~~~~~~~~gH~~~~-~~-p~~~~~~~~fl~~~~~ 187 (194)
T 2qs9_A 129 YIVQFGSTDDPFLPWKEQQEVADRL-E----TKLHKFTDCGHFQNT-EF-HELITVVKSLLKVPAL 187 (194)
T ss_dssp EEEEEEETTCSSSCHHHHHHHHHHH-T----CEEEEESSCTTSCSS-CC-HHHHHHHHHHHTCCCC
T ss_pred CEEEEEeCCCCcCCHHHHHHHHHhc-C----CeEEEeCCCCCccch-hC-HHHHHHHHHHHHhhhh
Confidence 9999999999999999999999888 3 389999999998653 33 3455667799987665
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-17 Score=171.73 Aligned_cols=220 Identities=12% Similarity=0.123 Sum_probs=140.3
Q ss_pred CCCCEEEEEcCCCCCCcc-----------ccchhhh---HHHhhCCcEEEEecCCCCC--------CCchhHHHhh-c--
Q 004816 490 EKPPLLVKSHGGPTSEAR-----------GILNLSI---QYWTSRGWAFVDVNYGGST--------GYGREFRERL-L-- 544 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~-----------~~~~~~~---~~la~~G~~v~~~d~rGs~--------g~g~~~~~~~-~-- 544 (729)
.+.|+||++||.+++... ..|...+ +.+...||.|+++|+||.| ++|..-.... .
T Consensus 40 ~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~G~S~G~~~g~~g~~~~~p~~~~~ 119 (377)
T 3i1i_A 40 ERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTDNLCNVQVKNPHVITTGPKSINPKTGDE 119 (377)
T ss_dssp TCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSCTTSTTCCCCSTTSBCTTTSSB
T ss_pred CCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEecccccccccCCCcccCCCCCCCCCCCCc
Confidence 345899999998665433 0134444 5677889999999999653 2222111000 0
Q ss_pred --cCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEE-eccccChhHHhh-------
Q 004816 545 --GRWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGAS-LYGVADLSMLRA------- 612 (729)
Q Consensus 545 --~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~~~~~~a~v~-~~~~~d~~~~~~------- 612 (729)
..+....++|+.+.+..+++.. +.+++. |+||||||.+++.++. +|++++++|+ .++.........
T Consensus 120 ~~~~~~~~~~~~~~~d~~~~l~~l--~~~~~~ilvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 197 (377)
T 3i1i_A 120 YAMDFPVFTFLDVARMQCELIKDM--GIARLHAVMGPSAGGMIAQQWAVHYPHMVERMIGVITNPQNPIITSVNVAQNAI 197 (377)
T ss_dssp CGGGSCCCCHHHHHHHHHHHHHHT--TCCCBSEEEEETHHHHHHHHHHHHCTTTBSEEEEESCCSBCCHHHHHHTTHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHc--CCCcEeeEEeeCHhHHHHHHHHHHChHHHHHhcccCcCCCcCCchhhHHHHHHH
Confidence 0112345677777777776653 346785 9999999999999988 9999999999 555433110000
Q ss_pred ----hcc--------------------------hhhhhhhhhhcC---------------------------------Ch
Q 004816 613 ----ETH--------------------------KFESRYIDNLVG---------------------------------SE 629 (729)
Q Consensus 613 ----~~~--------------------------~~~~~~~~~~~~---------------------------------~~ 629 (729)
... ......+...+. ..
T Consensus 198 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (377)
T 3i1i_A 198 EAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSIEVEPYEKVSSLTSFEKEINKLTYRSIELVDA 277 (377)
T ss_dssp HHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSSCCGGGTCTTCCCHHHHHHHHHHHHTTTTCCH
T ss_pred HHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhccccccccccchhHHHHHHHHHHhhhhcccCH
Confidence 000 000000000000 00
Q ss_pred hhh-------hhcCc-------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC-CCcccCCcc
Q 004816 630 KDY-------YEKSP-------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG-EQHGFRKAE 694 (729)
Q Consensus 630 ~~~-------~~~sp-------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-~gH~~~~~~ 694 (729)
..+ ...++ ...+.++++|+|+++|++|.++|++.+.++++.++..+.+++++++++ +||.... +
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~gH~~~~-e 356 (377)
T 3i1i_A 278 NSWMYTAKAVLLHDIAHGFSSLEEALSNVEANVLMIPCKQDLLQPSRYNYKMVDLLQKQGKYAEVYEIESINGHMAGV-F 356 (377)
T ss_dssp HHHHHHHHHHHHCBTTTTSSCHHHHHHTCCSEEEEECBTTCSSSCTHHHHHHHHHHHHTTCCEEECCBCCTTGGGHHH-H
T ss_pred HHHHHHHHHHhhcccccccCCHHHHHhhCCCCEEEEecCCccccCHHHHHHHHHHHHhcCCCceEEEcCCCCCCcchh-c
Confidence 000 00011 234568899999999999999999999999999988777899999998 9997432 3
Q ss_pred cHHHHHHHHHHHHHHHhC
Q 004816 695 NIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 695 ~~~~~~~~~~~fl~~~l~ 712 (729)
...++.+.+.+||.+++.
T Consensus 357 ~p~~~~~~i~~fl~~~~~ 374 (377)
T 3i1i_A 357 DIHLFEKKVYEFLNRKVS 374 (377)
T ss_dssp CGGGTHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHHHhhhh
Confidence 446777888999988764
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=163.63 Aligned_cols=218 Identities=13% Similarity=0.092 Sum_probs=142.6
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++.+..+.+ .|+||++||.+.+ ...|...+..|.++||.|+++|+||.|..... .
T Consensus 17 ~g~~l~~~~~g~------------~~~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~S~~~-----~--- 74 (309)
T 3u1t_A 17 EGATIAYVDEGS------------GQPVLFLHGNPTS--SYLWRNIIPYVVAAGYRAVAPDLIGMGDSAKP-----D--- 74 (309)
T ss_dssp TTEEEEEEEEEC------------SSEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTTSCCC-----S---
T ss_pred CCeEEEEEEcCC------------CCEEEEECCCcch--hhhHHHHHHHHHhCCCEEEEEccCCCCCCCCC-----C---
Confidence 688888655422 3689999998544 34566777888889999999999986654331 1
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-------HHhh-------
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-------MLRA------- 612 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-------~~~~------- 612 (729)
.....+++.+.+..+++.. +.+++.|+|||+||++++.++. +|++++++|+.++..... .+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (309)
T 3u1t_A 75 IEYRLQDHVAYMDGFIDAL--GLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFR 152 (309)
T ss_dssp SCCCHHHHHHHHHHHHHHH--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHc--CCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHH
Confidence 1223444444444444431 3468999999999999999988 999999999998754322 0000
Q ss_pred h-------------cchhhhhhhhhh-cC---Ch---hhhh-----------------hc--------------Cccccc
Q 004816 613 E-------------THKFESRYIDNL-VG---SE---KDYY-----------------EK--------------SPINFV 641 (729)
Q Consensus 613 ~-------------~~~~~~~~~~~~-~~---~~---~~~~-----------------~~--------------sp~~~~ 641 (729)
. ...+...+.... .. .. ..+. .. +....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (309)
T 3u1t_A 153 DLRTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWL 232 (309)
T ss_dssp HHTSTTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHH
T ss_pred HHhccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhc
Confidence 0 000000000000 00 00 0000 00 011224
Q ss_pred CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCCC
Q 004816 642 DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHF 714 (729)
Q Consensus 642 ~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 714 (729)
.++++|+|+++|++|..+|++.+.++.+.+. ..++++++++||... .+...++.+.+.+||+++....
T Consensus 233 ~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~~~~~~ 300 (309)
T 3u1t_A 233 MASPIPKLLFHAEPGALAPKPVVDYLSENVP----NLEVRFVGAGTHFLQ-EDHPHLIGQGIADWLRRNKPHA 300 (309)
T ss_dssp HHCCSCEEEEEEEECSSSCHHHHHHHHHHST----TEEEEEEEEESSCHH-HHCHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCCEEEEecCCCCCCCHHHHHHHHhhCC----CCEEEEecCCcccch-hhCHHHHHHHHHHHHHhcchhh
Confidence 6689999999999999999998888888765 457778899999653 3566788899999999998744
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-16 Score=166.79 Aligned_cols=232 Identities=13% Similarity=0.071 Sum_probs=144.9
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-------cchhhhH---HHhhCCcEEEEecCCC-CCCCc
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-------ILNLSIQ---YWTSRGWAFVDVNYGG-STGYG 536 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-------~~~~~~~---~la~~G~~v~~~d~rG-s~g~g 536 (729)
+|.++.+..+.+.+ ..+.|+||++||.+.+.... .|...+. .|+++||.|+++|+|| .++..
T Consensus 42 ~g~~l~y~~~g~~~-------~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~ 114 (377)
T 2b61_A 42 SYINVAYQTYGTLN-------DEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTT 114 (377)
T ss_dssp CSEEEEEEEESCCC-------TTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSS
T ss_pred cceeEEEEeccccc-------ccCCCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCC
Confidence 45667766654432 22358999999986554330 1454443 4768999999999998 34432
Q ss_pred hhHH-Hhh-----ccCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEEeccccChh
Q 004816 537 REFR-ERL-----LGRWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 537 ~~~~-~~~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~ 608 (729)
.... ... ...+.....+|+.+.+..+++. ++.+++. |+|||+||.+++.++. +|++++++|+.++.....
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 192 (377)
T 2b61_A 115 GPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFS 192 (377)
T ss_dssp CTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCC
T ss_pred CCcccCccccccccccCCcccHHHHHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCcccc
Confidence 2100 000 0111124567777777766665 3446887 9999999999999988 999999999999864321
Q ss_pred H----Hh-------hhcch--------------------hh-------hhhhhhhc------------------------
Q 004816 609 M----LR-------AETHK--------------------FE-------SRYIDNLV------------------------ 626 (729)
Q Consensus 609 ~----~~-------~~~~~--------------------~~-------~~~~~~~~------------------------ 626 (729)
. +. ..... .. ...+...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (377)
T 2b61_A 193 AEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQ 272 (377)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHHHHHhccccccccccccchHHHHHHHHhh
Confidence 0 00 00000 00 00000000
Q ss_pred -----C--Chh-------hhhhcC-------cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC-
Q 004816 627 -----G--SEK-------DYYEKS-------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE- 684 (729)
Q Consensus 627 -----~--~~~-------~~~~~s-------p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~- 684 (729)
. ... .+...+ ....+.++++|+|+++|++|.++|++++.+..+.+.+....+++++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 352 (377)
T 2b61_A 273 GKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPS 352 (377)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred hhhhccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCcccCCccchHHHHHHHHhcCCCceEEEeCC
Confidence 0 000 000111 134567889999999999999999976666667776666678999999
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHH
Q 004816 685 GEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 685 ~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
++||.... +...++.+.+.+||.+
T Consensus 353 ~~gH~~~~-e~p~~~~~~i~~fl~~ 376 (377)
T 2b61_A 353 DYGHDAFL-VDYDQFEKRIRDGLAG 376 (377)
T ss_dssp TTGGGHHH-HCHHHHHHHHHHHHHT
T ss_pred CCCchhhh-cCHHHHHHHHHHHHhc
Confidence 99997543 4456788888899865
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=162.47 Aligned_cols=200 Identities=13% Similarity=0.134 Sum_probs=130.3
Q ss_pred CCEEEEEcCCCCCCccccch-hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~-~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
.|+||++||.+... ..|. .....++++||.|+++|+||.| .+.. ... ...+++.+.+..+++.- +.
T Consensus 43 ~~~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G---~s~~---~~~---~~~~~~~~~~~~~l~~l--~~ 109 (293)
T 3hss_A 43 GDPVVFIAGRGGAG--RTWHPHQVPAFLAAGYRCITFDNRGIG---ATEN---AEG---FTTQTMVADTAALIETL--DI 109 (293)
T ss_dssp SEEEEEECCTTCCG--GGGTTTTHHHHHHTTEEEEEECCTTSG---GGTT---CCS---CCHHHHHHHHHHHHHHH--TC
T ss_pred CCEEEEECCCCCch--hhcchhhhhhHhhcCCeEEEEccCCCC---CCCC---ccc---CCHHHHHHHHHHHHHhc--CC
Confidence 47899999985443 3444 4677888999999999999763 2211 111 22344433333333321 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhh-----------------hhh----hhcCC
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESR-----------------YID----NLVGS 628 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~-----------------~~~----~~~~~ 628 (729)
+++.++|||+||.+++.++. +|++++++|+.+|................. ... .....
T Consensus 110 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (293)
T 3hss_A 110 APARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLND 189 (293)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHHTC
T ss_pred CcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhcccccccc
Confidence 68999999999999999988 999999999999876432211100000000 000 00000
Q ss_pred h------------------hh-------hhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE
Q 004816 629 E------------------KD-------YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 683 (729)
Q Consensus 629 ~------------------~~-------~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 683 (729)
. .. ....+....+.++++|+|+++|++|..+|++.+.++.+.+. .++++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~ 265 (293)
T 3hss_A 190 DVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADALP----NGRYLQI 265 (293)
T ss_dssp HHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHST----TEEEEEE
T ss_pred cccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHHCC----CceEEEe
Confidence 0 00 01122234467889999999999999999999888888774 5699999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+++||... .+...+..+.+.+|+.+
T Consensus 266 ~~~gH~~~-~~~p~~~~~~i~~fl~~ 290 (293)
T 3hss_A 266 PDAGHLGF-FERPEAVNTAMLKFFAS 290 (293)
T ss_dssp TTCCTTHH-HHSHHHHHHHHHHHHHT
T ss_pred CCCcchHh-hhCHHHHHHHHHHHHHh
Confidence 99999753 34556777888888875
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-16 Score=159.77 Aligned_cols=216 Identities=13% Similarity=0.087 Sum_probs=135.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh-hhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 546 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~ 546 (729)
+|.++++..+.+. ..|.||++||.+.+. ..|.. .+..|+++||.|+++|+||.|.+...- ...
T Consensus 9 ~g~~l~y~~~G~~----------~~~~vvllHG~~~~~--~~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~~--~~~-- 72 (298)
T 1q0r_A 9 GDVELWSDDFGDP----------ADPALLLVMGGNLSA--LGWPDEFARRLADGGLHVIRYDHRDTGRSTTRD--FAA-- 72 (298)
T ss_dssp TTEEEEEEEESCT----------TSCEEEEECCTTCCG--GGSCHHHHHHHHTTTCEEEEECCTTSTTSCCCC--TTT--
T ss_pred CCeEEEEEeccCC----------CCCeEEEEcCCCCCc--cchHHHHHHHHHhCCCEEEeeCCCCCCCCCCCC--CCc--
Confidence 7888887766432 136799999985443 44554 458889999999999999876654300 001
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc-Ch--h--------------
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA-DL--S-------------- 608 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~-d~--~-------------- 608 (729)
.....+++.+-+..+++. ++.+++.++||||||.+++.++. +|++++++|+.++.. .. .
T Consensus 73 -~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
T 1q0r_A 73 -HPYGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLD 149 (298)
T ss_dssp -SCCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSS
T ss_pred -CCcCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCcccccchhhhhhhhhhhc
Confidence 112233333333333332 23468999999999999999998 999999999987654 21 0
Q ss_pred -------H----Hhh------hcchhhhhhhh---hh----c-CChh----------------------hhh---hcCcc
Q 004816 609 -------M----LRA------ETHKFESRYID---NL----V-GSEK----------------------DYY---EKSPI 638 (729)
Q Consensus 609 -------~----~~~------~~~~~~~~~~~---~~----~-~~~~----------------------~~~---~~sp~ 638 (729)
. +.. ........... .. . .+.+ .+. ..+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (298)
T 1q0r_A 150 GLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSR 229 (298)
T ss_dssp CSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGG
T ss_pred ccccccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchhhhhhhhhcCcccc
Confidence 0 000 00000000000 00 0 0000 000 00112
Q ss_pred cc-cCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 639 NF-VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 639 ~~-~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
.. +.++++|+|+++|++|.++|++.++++.+.+. ..+++++|++||. . ..++.+.+.+|+.+++
T Consensus 230 ~~~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~gHe--~---p~~~~~~i~~fl~~~~ 294 (298)
T 1q0r_A 230 AAELREVTVPTLVIQAEHDPIAPAPHGKHLAGLIP----TARLAEIPGMGHA--L---PSSVHGPLAEVILAHT 294 (298)
T ss_dssp GGGGGGCCSCEEEEEETTCSSSCTTHHHHHHHTST----TEEEEEETTCCSS--C---CGGGHHHHHHHHHHHH
T ss_pred cccccccCCCEEEEEeCCCccCCHHHHHHHHHhCC----CCEEEEcCCCCCC--C---cHHHHHHHHHHHHHHh
Confidence 23 67889999999999999999988887776654 5699999999992 2 2467788889998875
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=160.47 Aligned_cols=206 Identities=12% Similarity=0.096 Sum_probs=134.0
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
...|+||++||.+.+ ...|...+..|+++||.|+++|+||.|.+..... .....++....+..+++... +
T Consensus 10 ~~~~~vvllHG~~~~--~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~-------~~~~~~~~~~~~~~~l~~l~-~ 79 (267)
T 3sty_A 10 FVKKHFVLVHAAFHG--AWCWYKIVALMRSSGHNVTALDLGASGINPKQAL-------QIPNFSDYLSPLMEFMASLP-A 79 (267)
T ss_dssp CCCCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTCSCCGG-------GCCSHHHHHHHHHHHHHTSC-T
T ss_pred CCCCeEEEECCCCCC--cchHHHHHHHHHhcCCeEEEeccccCCCCCCcCC-------ccCCHHHHHHHHHHHHHhcC-C
Confidence 456899999998543 4557788899999999999999998765443311 01234444444444444421 3
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH-----Hhhhc----chh--------------------hh
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-----LRAET----HKF--------------------ES 619 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~-----~~~~~----~~~--------------------~~ 619 (729)
.+++.|+|||+||.+++.++. +|++++++|++++...... ..... ..+ ..
T Consensus 80 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (267)
T 3sty_A 80 NEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGP 159 (267)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEECCH
T ss_pred CCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhhhH
Confidence 579999999999999999998 9999999999887542111 00000 000 00
Q ss_pred hhhhhh-cC--Ch------------------hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCE
Q 004816 620 RYIDNL-VG--SE------------------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 678 (729)
Q Consensus 620 ~~~~~~-~~--~~------------------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~ 678 (729)
...... .. .. ..+............++|+|+++|++|..+|++.+.++.+.+. .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~ 235 (267)
T 3sty_A 160 KFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNP----PD 235 (267)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHHHHHHHHHHHHSC----CS
T ss_pred HHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccCHHHHHHHHHhCC----Cc
Confidence 000000 00 00 0011112222222335899999999999999998888887764 35
Q ss_pred EEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 679 ALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 679 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
++++++++||.... +...++.+.+.+|++++
T Consensus 236 ~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 236 EVKEIEGSDHVTMM-SKPQQLFTTLLSIANKY 266 (267)
T ss_dssp EEEECTTCCSCHHH-HSHHHHHHHHHHHHHHC
T ss_pred eEEEeCCCCccccc-cChHHHHHHHHHHHHhc
Confidence 89999999997533 56678888889998764
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=174.44 Aligned_cols=221 Identities=17% Similarity=0.193 Sum_probs=143.3
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~ 540 (729)
+.+... +|..+++.... ..|+||++||++.+. ..|...+..|+++||.|+++|+||.|.+....
T Consensus 6 ~~~~~~-dG~~l~y~~~G------------~gp~VV~lHG~~~~~--~~~~~l~~~La~~Gy~Vi~~D~rG~G~S~~~~- 69 (456)
T 3vdx_A 6 VGQENS-TSIDLYYEDHG------------TGVPVVLIHGFPLSG--HSWERQSAALLDAGYRVITYDRRGFGQSSQPT- 69 (456)
T ss_dssp EEEETT-EEEEEEEEEES------------SSEEEEEECCTTCCG--GGGTTHHHHHHHHTEEEEEECCTTSTTSCCCS-
T ss_pred eccccc-CCeEEEEEEeC------------CCCEEEEECCCCCcH--HHHHHHHHHHHHCCcEEEEECCCCCCCCCCCC-
Confidence 334454 78788754431 237899999986543 44667888899999999999999876543221
Q ss_pred HhhccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEEeccccChhH--------
Q 004816 541 ERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADLSM-------- 609 (729)
Q Consensus 541 ~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-~~~~~a~v~~~~~~d~~~-------- 609 (729)
..+.. ...+|+.++++++ +.++++++|||+||++++.++. + |++++++|+.++......
T Consensus 70 ----~~~s~~~~a~dl~~~l~~l------~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~ 139 (456)
T 3vdx_A 70 ----TGYDYDTFAADLNTVLETL------DLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDG 139 (456)
T ss_dssp ----SCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSC
T ss_pred ----CCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccc
Confidence 11111 1255566666655 4468999999999998888877 4 999999999998653210
Q ss_pred -----Hhh--------hcchhhhhhhhhhcC---------Chhhh---------------------hhcCcccccCCCCC
Q 004816 610 -----LRA--------ETHKFESRYIDNLVG---------SEKDY---------------------YEKSPINFVDKFSC 646 (729)
Q Consensus 610 -----~~~--------~~~~~~~~~~~~~~~---------~~~~~---------------------~~~sp~~~~~~i~~ 646 (729)
... ....+...+...... ....+ ...+....+.++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~ 219 (456)
T 3vdx_A 140 AAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDV 219 (456)
T ss_dssp SBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTTCCS
T ss_pred cchHHHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhhCCC
Confidence 000 000000000000000 00000 01133345678899
Q ss_pred CEEEEEeCCCCCCChH-HHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 647 PIILFQGLEDKVVPPD-QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 647 PvL~i~G~~D~~vp~~-~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
|+|+++|++|.++|++ ....+.+.+. ++++++++++||.+.. +....+.+.+.+||.+++.
T Consensus 220 PvLiI~G~~D~~vp~~~~~~~l~~~~~----~~~~~~i~gagH~~~~-e~p~~v~~~I~~FL~~~l~ 281 (456)
T 3vdx_A 220 PALILHGTGDRTLPIENTARVFHKALP----SAEYVEVEGAPHGLLW-THAEEVNTALLAFLAKALE 281 (456)
T ss_dssp CCEEEEETTCSSSCGGGTHHHHHHHCT----TSEEEEETTCCSCTTT-TTHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHHCC----CceEEEeCCCCCcchh-hCHHHHHHHHHHHHHHhhc
Confidence 9999999999999998 4444544432 5699999999998644 6778899999999998874
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-16 Score=159.14 Aligned_cols=215 Identities=15% Similarity=0.133 Sum_probs=136.6
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+.+.+ ...|.||++||.+.+ ...|...+..|++ +|.|+++|+||.|.+.... .
T Consensus 10 ~g~~l~y~~~g~~~--------~~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~~-----~-- 71 (266)
T 2xua_A 10 NGTELHYRIDGERH--------GNAPWIVLSNSLGTD--LSMWAPQVAALSK-HFRVLRYDTRGHGHSEAPK-----G-- 71 (266)
T ss_dssp SSSEEEEEEESCSS--------SCCCEEEEECCTTCC--GGGGGGGHHHHHT-TSEEEEECCTTSTTSCCCS-----S--
T ss_pred CCEEEEEEEcCCcc--------CCCCeEEEecCccCC--HHHHHHHHHHHhc-CeEEEEecCCCCCCCCCCC-----C--
Confidence 78888877765421 124789999997443 3456677777765 5999999999866543211 1
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh---hHHhhh--------cc
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---SMLRAE--------TH 615 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~---~~~~~~--------~~ 615 (729)
....+++.+.+..+++. +..+++.++||||||.+++.++. +|++++++|+.++.... ..+... ..
T Consensus 72 -~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
T 2xua_A 72 -PYTIEQLTGDVLGLMDT--LKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMH 148 (266)
T ss_dssp -CCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHH
T ss_pred -CCCHHHHHHHHHHHHHh--cCCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChH
Confidence 12233333333333333 13468999999999999999998 99999999999875321 000000 00
Q ss_pred hhhhhhhhhhc---------------------CChhh-------hhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHH
Q 004816 616 KFESRYIDNLV---------------------GSEKD-------YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKI 667 (729)
Q Consensus 616 ~~~~~~~~~~~---------------------~~~~~-------~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~ 667 (729)
........... ..... +...+....+.++++|+|+++|++|..+|++.++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~ 228 (266)
T 2xua_A 149 ALADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQGREL 228 (266)
T ss_dssp HHHHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCSSSCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCCCcCCHHHHHHH
Confidence 00000000000 00111 112233345678899999999999999999988888
Q ss_pred HHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 668 YKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 668 ~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.+.+.. .++++++ +||.... +...++.+.+.+|+.+
T Consensus 229 ~~~~~~----~~~~~~~-~gH~~~~-e~p~~~~~~i~~fl~~ 264 (266)
T 2xua_A 229 AQAIAG----ARYVELD-ASHISNI-ERADAFTKTVVDFLTE 264 (266)
T ss_dssp HHHSTT----CEEEEES-CCSSHHH-HTHHHHHHHHHHHHTC
T ss_pred HHhCCC----CEEEEec-CCCCchh-cCHHHHHHHHHHHHHh
Confidence 877653 4899999 9997543 4456777888888753
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-16 Score=156.86 Aligned_cols=199 Identities=16% Similarity=0.212 Sum_probs=124.2
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+.+. ..|...+..|+++||.|+++|+||.|.+.... .....+++..-+..+++. ++.++
T Consensus 28 ~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~--------~~~~~~~~a~dl~~ll~~--l~~~~ 95 (281)
T 3fob_A 28 KPVVLIHGWPLSG--RSWEYQVPALVEAGYRVITYDRRGFGKSSQPW--------EGYEYDTFTSDLHQLLEQ--LELQN 95 (281)
T ss_dssp EEEEEECCTTCCG--GGGTTTHHHHHHTTEEEEEECCTTSTTSCCCS--------SCCSHHHHHHHHHHHHHH--TTCCS
T ss_pred CeEEEECCCCCcH--HHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCc--------cccCHHHHHHHHHHHHHH--cCCCc
Confidence 4688899986543 45666778898999999999999876543221 112234444334434333 23468
Q ss_pred EEEEEcChHHHHHHHHHh--CCCcceEEEEeccccCh--------------h---HHhhh----cchhhhhhhhhhcC--
Q 004816 573 LCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADL--------------S---MLRAE----THKFESRYIDNLVG-- 627 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~--------------~---~~~~~----~~~~~~~~~~~~~~-- 627 (729)
+.|+||||||.+++.++. +|++++++|+.++.... . .+... ...+...+......
T Consensus 96 ~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (281)
T 3fob_A 96 VTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAAG 175 (281)
T ss_dssp EEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCBT
T ss_pred EEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccchhHHHHHHHHhhhhHHHHHHHHHHHhcccc
Confidence 999999999988776655 58999999988764210 0 00000 00000000000000
Q ss_pred ---------------------Ch-------hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHH-HHHHHHHHhCCCCE
Q 004816 628 ---------------------SE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA-RKIYKALKENGLPV 678 (729)
Q Consensus 628 ---------------------~~-------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~-~~~~~~l~~~g~~~ 678 (729)
.. ..+...+....+.++++|+|+++|++|.++|++.+ ..+.+.+. +.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~p----~~ 251 (281)
T 3fob_A 176 DRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIP----NS 251 (281)
T ss_dssp TBCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCGGGTHHHHHHHST----TC
T ss_pred cccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhhcCCCEEEEecCCCCCcCHHHHHHHHHHhCC----Cc
Confidence 00 00111223345788999999999999999999876 44444443 45
Q ss_pred EEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 679 ALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 679 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++++++++||... .+...++.+.+.+|++
T Consensus 252 ~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 252 KVALIKGGPHGLN-ATHAKEFNEALLLFLK 280 (281)
T ss_dssp EEEEETTCCTTHH-HHTHHHHHHHHHHHHC
T ss_pred eEEEeCCCCCchh-hhhHHHHHHHHHHHhh
Confidence 9999999999753 4566788888888874
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=161.82 Aligned_cols=217 Identities=18% Similarity=0.134 Sum_probs=134.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCC-CCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 546 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~ 546 (729)
+|..+++....+ ...|+||++||. ++......|...+..|++. |.|+++|+||.|.+.... .
T Consensus 15 ~g~~l~y~~~g~----------~g~p~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~-----~- 77 (285)
T 1c4x_A 15 GTLASHALVAGD----------PQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIGFGQSEYPE-----T- 77 (285)
T ss_dssp TTSCEEEEEESC----------TTSCEEEEECCCSTTCCHHHHHGGGHHHHHTT-SEEEEECCTTSTTSCCCS-----S-
T ss_pred CCEEEEEEecCC----------CCCCEEEEEeCCCCCCcchhhHHHHHHHHhhC-cEEEEecCCCCCCCCCCC-----C-
Confidence 677787655432 224779999996 3333344566667777665 999999999866543211 0
Q ss_pred CCcccHHHH----HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh--------hHHhhh
Q 004816 547 WGIVDVNDC----CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL--------SMLRAE 613 (729)
Q Consensus 547 ~~~~~~~D~----~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~--------~~~~~~ 613 (729)
.....+++ ...+..+++. .+.+++.|+||||||.+++.++. +|++++++|+.++.... ......
T Consensus 78 -~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 154 (285)
T 1c4x_A 78 -YPGHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAF 154 (285)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTG
T ss_pred -cccchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHH
Confidence 01223333 3333333332 12468999999999999999988 99999999999875421 000000
Q ss_pred ---cc--h--------------h--hhhhhhhhc---CChhhhh---h------------cCcccccCCCCCCEEEEEeC
Q 004816 614 ---TH--K--------------F--ESRYIDNLV---GSEKDYY---E------------KSPINFVDKFSCPIILFQGL 654 (729)
Q Consensus 614 ---~~--~--------------~--~~~~~~~~~---~~~~~~~---~------------~sp~~~~~~i~~PvL~i~G~ 654 (729)
.. . . ...+..... .++..+. . ......+.++++|+|+++|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 234 (285)
T 1c4x_A 155 YADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGR 234 (285)
T ss_dssp GGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEET
T ss_pred hccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCCEEEEEeC
Confidence 00 0 0 000000000 0010000 0 01223467889999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 655 EDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 655 ~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+|.++|++.++++++.+. ++++++++++||.... +...++.+.+.+||.+
T Consensus 235 ~D~~~p~~~~~~~~~~~~----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 235 QDRIVPLDTSLYLTKHLK----HAELVVLDRCGHWAQL-ERWDAMGPMLMEHFRA 284 (285)
T ss_dssp TCSSSCTHHHHHHHHHCS----SEEEEEESSCCSCHHH-HSHHHHHHHHHHHHHC
T ss_pred CCeeeCHHHHHHHHHhCC----CceEEEeCCCCcchhh-cCHHHHHHHHHHHHhc
Confidence 999999998888877664 5699999999997533 4566788888888864
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-17 Score=173.10 Aligned_cols=228 Identities=18% Similarity=0.170 Sum_probs=141.9
Q ss_pred CCcEEEEeecc-CCC--eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc---------ccchhhhHHHhhCCcE
Q 004816 456 SLPELIEFPTE-VPG--QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---------GILNLSIQYWTSRGWA 523 (729)
Q Consensus 456 ~~~~~~~~~~~-~dG--~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~---------~~~~~~~~~la~~G~~ 523 (729)
....++.+.+. .+| ..+.++++.|.+.. +.++.|+||++||+++.... ..+...++.|+++||.
T Consensus 44 v~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~----~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 119 (397)
T 3h2g_A 44 VRVAEFTYATIGVEGEPATASGVLLIPGGER----CSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYV 119 (397)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEECTT----CCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCE
T ss_pred eEEEEEEEEecCCCCCeEEEEEEEEeCCCCC----CCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCE
Confidence 34566777665 124 35899999997632 24568999999998654432 2255678889999999
Q ss_pred EEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh--CC-----Ccc
Q 004816 524 FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA--FR-----DTF 595 (729)
Q Consensus 524 v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~--~~-----~~~ 595 (729)
|+++|+||.|+++..............++.|...++..+.++ +..++++++++|||+||++++.++. .+ -.+
T Consensus 120 V~~~D~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~ 199 (397)
T 3h2g_A 120 VVGSDYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHL 199 (397)
T ss_dssp EEEECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEE
T ss_pred EEEecCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcce
Confidence 999999998765321110000000012355666666666554 4435689999999999999988863 22 267
Q ss_pred eEEEEeccccChhHHhhhc----------------------------chh--------hhhh---hhhhcC---C-----
Q 004816 596 KAGASLYGVADLSMLRAET----------------------------HKF--------ESRY---IDNLVG---S----- 628 (729)
Q Consensus 596 ~a~v~~~~~~d~~~~~~~~----------------------------~~~--------~~~~---~~~~~~---~----- 628 (729)
.+++..++..++....... ... ...+ +...+. .
T Consensus 200 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (397)
T 3h2g_A 200 VASAPISGPYALEQTFLDSWSGSNAVGENTFGILLGSYAIVAMQHTYKNIYLEPGQVFQDPWAAKVEPLFPGKQSLTDMF 279 (397)
T ss_dssp EEEEEESCCSSHHHHHHHHTTSBCSSSBCTTHHHHHHHHHHHHHHHHCCSCSSGGGTBCTTHHHHSGGGTTBSSCHHHHH
T ss_pred EEEecccccccHHHHHHhhccccccccccchhhhHHHHHHHHHHHhCchhhcCHHHHhchhHHHHHHHhcCCCccchhhh
Confidence 8888888888875332110 000 0000 000000 0
Q ss_pred ----------------hh---------------hhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCC
Q 004816 629 ----------------EK---------------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 677 (729)
Q Consensus 629 ----------------~~---------------~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~ 677 (729)
.. .....+. ....+++|+|++||++|.+||++++..+++.+++.|.+
T Consensus 280 ~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~~~~~~P~li~~g~~D~~vp~~~~~~~~~~~~~~g~~ 357 (397)
T 3h2g_A 280 LNDTLPSIDKVKSYFQPGFYSDFPSNPANPFRQDLARNNL--LEWAPQTPTLLCGSSNDATVPLKNAQTAIASFQQRGSN 357 (397)
T ss_dssp HTTSSCCGGGHHHHBCHHHHHHHHHCTTCHHHHHHHHTCC--CSSCCCSCEEEEECTTBSSSCTHHHHHHHHHHHHTTCC
T ss_pred ccccCCCccchHhhcCHHHHHhhhhCCccHHHHHHHhcch--hccCCCCCEEEEEECCCCccCHHHHHHHHHHHHhcCCC
Confidence 00 0000010 01234789999999999999999999999999999987
Q ss_pred -EEEEEECCCCccc
Q 004816 678 -VALVEYEGEQHGF 690 (729)
Q Consensus 678 -~~~~~~~~~gH~~ 690 (729)
+++.... .||..
T Consensus 358 ~v~l~~~~-~g~~~ 370 (397)
T 3h2g_A 358 QVALVDTG-TGNAS 370 (397)
T ss_dssp CEEEEECS-CSCGG
T ss_pred ceEEEEcC-CCCCC
Confidence 7777654 35544
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=152.17 Aligned_cols=181 Identities=12% Similarity=0.033 Sum_probs=120.0
Q ss_pred CCEEEEEcCCCCCCccccchhhh-HHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~-~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
.|+||++||.+.+... .|.... ..|+++||.|+++|+|.+.. .+.+++.+.+..+++.. .
T Consensus 4 ~p~vv~~HG~~~~~~~-~~~~~~~~~l~~~g~~v~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~---~ 64 (192)
T 1uxo_A 4 TKQVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQHTL---H 64 (192)
T ss_dssp CCEEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGGGC---C
T ss_pred CCEEEEEcCCCCCcch-hHHHHHHHHHHhCCcEEEEecCCCCCC---------------CCHHHHHHHHHHHHHhc---c
Confidence 5889999998554321 344444 46888999999999993221 12455555554444442 4
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCC--cceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCC
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCP 647 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~--~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P 647 (729)
+++.++|||+||.+++.++. +|+ +++++|+.+|.......... . ..+...+ .....+.++++|
T Consensus 65 ~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~~~~---~-----~~~~~~~------~~~~~~~~~~~P 130 (192)
T 1uxo_A 65 ENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQM---L-----DEFTQGS------FDHQKIIESAKH 130 (192)
T ss_dssp TTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCGG---G-----GGGTCSC------CCHHHHHHHEEE
T ss_pred CCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccccchh---h-----hhhhhcC------CCHHHHHhhcCC
Confidence 78999999999999999998 888 99999999987653211100 0 0010000 011234456689
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+|+++|++|..+|++.+.++++.+ +.++++++++||.+..... ..+..+.+|+.+++.
T Consensus 131 ~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~--~~~~~~~~~l~~~l~ 188 (192)
T 1uxo_A 131 RAVIASKDDQIVPFSFSKDLAQQI-----DAALYEVQHGGHFLEDEGF--TSLPIVYDVLTSYFS 188 (192)
T ss_dssp EEEEEETTCSSSCHHHHHHHHHHT-----TCEEEEETTCTTSCGGGTC--SCCHHHHHHHHHHHH
T ss_pred EEEEecCCCCcCCHHHHHHHHHhc-----CceEEEeCCCcCccccccc--ccHHHHHHHHHHHHH
Confidence 999999999999999998888887 3389999999998643211 111234555555554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=159.48 Aligned_cols=231 Identities=11% Similarity=0.163 Sum_probs=156.7
Q ss_pred ECCEEEEEECC--------CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 153 FGDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 153 ~~~~i~~~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+++.++|.... .++||++++++ ++.++|.. ...++|||||++|+|+....... ..+||
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~--------~~~~~~SpDg~~la~~~~~~~~~----~~~l~ 88 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKN--NARRFIEN--------ATMPRISPDGKKIAFMRANEEKK----VSEIW 88 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTT--CCEEEEES--------CEEEEECTTSSEEEEEEEETTTT----EEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCC--CceEEccc--------CCCeEECCCCCEEEEEEeccCCC----cceEE
Confidence 78888887421 34899999998 77777722 36789999999999998654211 46799
Q ss_pred EEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCC---------CC----------CCCcEEEEEEecCCCCe-e
Q 004816 225 AIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPN---------MP----------WDKAELWVGYISENGDV-Y 284 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~---------~~----------~~~~~l~~~d~~~~g~~-~ 284 (729)
++++++++.++++.... ...++|||||++|+|.+.+... .+ ....+||++|++ +|+. .
T Consensus 89 ~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~-~~~~~~ 166 (347)
T 2gop_A 89 VADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE-SEEVIE 166 (347)
T ss_dssp EEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT-TTEEEE
T ss_pred EEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC-CCeEEe
Confidence 99999999998887655 7889999999999999854210 00 013679999998 6764 3
Q ss_pred eeEEecCCCCCccccccCceeCCCCcEEEEEecCC-----C-ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceee
Q 004816 285 KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN-----G-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 358 (729)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~-----g-~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~ 358 (729)
.+.. . . +..+.|+||| ++|...... . ...||.+| +++.+.|+.. .... .++
T Consensus 167 ~l~~-~--~------~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~--~~s-------- 223 (347)
T 2gop_A 167 EFEK-P--R------FSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFY--AVD-------- 223 (347)
T ss_dssp EEEE-E--T------TCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEE--EEE--------
T ss_pred eecC-C--C------cccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-ccee--eEC--------
Confidence 3222 2 1 2468999999 888876522 1 56899999 7788877743 2211 112
Q ss_pred eeecCCCCEEEEEEEEC-----CeEEEEEEECCCCceEeeccC-CcceEE-e-eeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 359 IQSHGEKNLIACSYRQN-----GRSYLGILDDFGHSLSLLDIP-FTDIDN-I-TLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 359 l~~~~~~~~l~~~s~~~-----g~~~ly~~d~~~g~~~~lt~~-~~~v~~-~-~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
+ +++.|++.+... ...+||.++ +++.+.++.. ...+.. + .. ++ +++ .++.+....|| ++ +
T Consensus 224 -p---dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~-~~~~~~~~~l~-~~--~ 291 (347)
T 2gop_A 224 -S---DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYF-TLFEEGSVNLY-IW--D 291 (347)
T ss_dssp -E---CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEE-EEEETTEEEEE-EE--S
T ss_pred -C---CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEE-EEecCCcEEEE-Ec--C
Confidence 2 788888877554 246899998 6777777765 345554 4 33 44 444 44444455688 87 3
Q ss_pred Ccce
Q 004816 431 HKLK 434 (729)
Q Consensus 431 ~~~~ 434 (729)
++.+
T Consensus 292 g~~~ 295 (347)
T 2gop_A 292 GEIK 295 (347)
T ss_dssp SSEE
T ss_pred CceE
Confidence 5543
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-17 Score=164.63 Aligned_cols=227 Identities=12% Similarity=0.074 Sum_probs=139.2
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+...+.. ++.++.+....+ +.|+||++||.+.. ...|...+..+.++||.|+++|+||.|.....
T Consensus 4 ~~~~~~~--~~~~~~~~~~~~-----------~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~ 68 (279)
T 4g9e_A 4 NYHELET--SHGRIAVRESEG-----------EGAPLLMIHGNSSS--GAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDA 68 (279)
T ss_dssp EEEEEEE--TTEEEEEEECCC-----------CEEEEEEECCTTCC--GGGGHHHHHSHHHHHEEEEEECCTTSTTSCCC
T ss_pred EEEEEEc--CCceEEEEecCC-----------CCCeEEEECCCCCc--hhHHHHHHhHHHhcCCeEEeecCCCCCCCCCC
Confidence 4555666 455666544322 24789999998543 34567777777788999999999987765432
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-HHhhhcc-
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-MLRAETH- 615 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-~~~~~~~- 615 (729)
..... ....+++...+..+++. .+.+++.++|||+||.+++.++. +|+ +.++|+.++..... .......
T Consensus 69 ~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~~~~~~~~~~~~~~ 140 (279)
T 4g9e_A 69 IDPDR-----SYSMEGYADAMTEVMQQ--LGIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTPPVAREEVGQGFKS 140 (279)
T ss_dssp SCHHH-----HSSHHHHHHHHHHHHHH--HTCCCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCCCCCGGGHHHHBCC
T ss_pred CCccc-----CCCHHHHHHHHHHHHHH--hCCCceEEEEECchHHHHHHHHhhCCc-ceeEEEecCCCCCCCccchhhcc
Confidence 10111 11234444444444443 13468999999999999999998 888 66666665543221 1100000
Q ss_pred ----------h----hhhhhhhhhcC---Ch------------------hhhh---hcCcccccCCCCCCEEEEEeCCCC
Q 004816 616 ----------K----FESRYIDNLVG---SE------------------KDYY---EKSPINFVDKFSCPIILFQGLEDK 657 (729)
Q Consensus 616 ----------~----~~~~~~~~~~~---~~------------------~~~~---~~sp~~~~~~i~~PvL~i~G~~D~ 657 (729)
. ....+...... .. ..+. ..+....+.++++|+|+++|++|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~ 220 (279)
T 4g9e_A 141 GPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGRDEP 220 (279)
T ss_dssp STTGGGGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHCCSCEEEEEETTCS
T ss_pred chhhhhcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhcCCCEEEEEcCCCc
Confidence 0 00000000000 00 0000 112222356789999999999999
Q ss_pred CCChHHHHHHH-HHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCC
Q 004816 658 VVPPDQARKIY-KALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 658 ~vp~~~~~~~~-~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 713 (729)
.+|++.+.+++ +.+. ++++++++++||... .+...++.+.+.+||++.-..
T Consensus 221 ~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~~~~~ 272 (279)
T 4g9e_A 221 FVELDFVSKVKFGNLW----EGKTHVIDNAGHAPF-REAPAEFDAYLARFIRDCTQL 272 (279)
T ss_dssp SBCHHHHTTCCCSSBG----GGSCEEETTCCSCHH-HHSHHHHHHHHHHHHHHHHSS
T ss_pred ccchHHHHHHhhccCC----CCeEEEECCCCcchH-HhCHHHHHHHHHHHHHHhhhh
Confidence 99998877765 3332 457899999999743 356678889999999998763
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.6e-17 Score=163.86 Aligned_cols=198 Identities=19% Similarity=0.212 Sum_probs=126.9
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+.... ..+.. ...+|+.++++.+ +.+
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~-----~~~~~~~~~~dl~~~l~~l------~~~ 90 (279)
T 1hkh_A 24 QPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRGFGGSSKVN-----TGYDYDTFAADLHTVLETL------DLR 90 (279)
T ss_dssp EEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTSTTSCCCS-----SCCSHHHHHHHHHHHHHHH------TCC
T ss_pred CcEEEEcCCCch--hhHHhhhHHHHHhCCcEEEEeCCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHhc------CCC
Confidence 349999998543 355777888999999999999999876543221 11111 1245566666654 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCC-cceEEEEeccccChh------------HHh----hh----cch----hhhhhhhhh
Q 004816 572 RLCITGGSAGGYTTLAALA-FRD-TFKAGASLYGVADLS------------MLR----AE----THK----FESRYIDNL 625 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~-~~~a~v~~~~~~d~~------------~~~----~~----~~~----~~~~~~~~~ 625 (729)
++.++||||||.+++.++. +|+ +++++|+.++..... ... .. ... +...+....
T Consensus 91 ~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (279)
T 1hkh_A 91 DVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLD 170 (279)
T ss_dssp SEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHH
T ss_pred ceEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCCcHHHHHHHHHHhhhhhhhhHHHHHhhhhhcc
Confidence 8999999999999999888 898 999999998742210 000 00 000 000000000
Q ss_pred --cC---Chhh---h----------------h--hcCcccccCCC---CCCEEEEEeCCCCCCChHHH-HHHHHHHHhCC
Q 004816 626 --VG---SEKD---Y----------------Y--EKSPINFVDKF---SCPIILFQGLEDKVVPPDQA-RKIYKALKENG 675 (729)
Q Consensus 626 --~~---~~~~---~----------------~--~~sp~~~~~~i---~~PvL~i~G~~D~~vp~~~~-~~~~~~l~~~g 675 (729)
.. ..+. + . ..+....+.++ ++|+|+++|++|..+|++.+ ..+.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~--- 247 (279)
T 1hkh_A 171 ENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVP--- 247 (279)
T ss_dssp HHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHCT---
T ss_pred cCCcccccHHHHHhhhhhhccCcHHHHHHHHHHHhhchhhhHHHhccCCCCEEEEEcCCCccCChHHHHHHHHHhCC---
Confidence 00 0000 0 0 11112234567 89999999999999999877 77766654
Q ss_pred CCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 676 LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 676 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.+++++++++||... .++..++.+.+.+|+.
T Consensus 248 -~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 248 -EADYVEVEGAPHGLL-WTHADEVNAALKTFLA 278 (279)
T ss_dssp -TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHH
T ss_pred -CeeEEEeCCCCccch-hcCHHHHHHHHHHHhh
Confidence 458999999999763 3456778888888885
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=178.45 Aligned_cols=245 Identities=13% Similarity=0.042 Sum_probs=167.7
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCC--CCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPA--KAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~--~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
.+..|.|||+ ++.|............||..+. + |....++... .. ...+|+++++.++|.....+.+
T Consensus 66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~--g~~~~l~~~~-~~-------~~~~~s~dg~~~~~~s~~~~~~ 134 (582)
T 3o4h_A 66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP--GEEQRLEAVK-PM-------RILSGVDTGEAVVFTGATEDRV 134 (582)
T ss_dssp EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST--TCCEECTTSC-SB-------EEEEEEECSSCEEEEEECSSCE
T ss_pred ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC--CccccccCCC-Cc-------eeeeeCCCCCeEEEEecCCCCc
Confidence 4568899987 6766665422345567888876 5 3444555432 11 1346888888888887777777
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPR 247 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~ 247 (729)
+++|+++ ++.++++... . .+++|||||++|++...+... ...||++|+++|+.++|+...+....|+
T Consensus 135 ~l~d~~~--g~~~~l~~~~----~--~~~~~spDG~~la~~~~~~~~-----~~~i~~~d~~~g~~~~l~~~~~~~~~~~ 201 (582)
T 3o4h_A 135 ALYALDG--GGLRELARLP----G--FGFVSDIRGDLIAGLGFFGGG-----RVSLFTSNLSSGGLRVFDSGEGSFSSAS 201 (582)
T ss_dssp EEEEEET--TEEEEEEEES----S--CEEEEEEETTEEEEEEEEETT-----EEEEEEEETTTCCCEEECCSSCEEEEEE
T ss_pred eEEEccC--CcEEEeecCC----C--ceEEECCCCCEEEEEEEcCCC-----CeEEEEEcCCCCCceEeecCCCccccce
Confidence 7889988 8888888652 2 678999999999988776432 2569999999999999988777788999
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCce--------eCCCCcEEEEEecCC
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK--------WSSKGELFFVTDRKN 319 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------wspDG~l~~~~~~~~ 319 (729)
|||||++|+ .+ +..+ ..+||++|++ +++. . ++.+.+ ..+..+. |||||++++.... .
T Consensus 202 ~SpDG~~l~-~~-~~~~----~~~i~~~d~~-~~~~--~-~~~~~~----~~~~~~~~~~~~~~~~spdg~~~~~~~~-~ 266 (582)
T 3o4h_A 202 ISPGMKVTA-GL-ETAR----EARLVTVDPR-DGSV--E-DLELPS----KDFSSYRPTAITWLGYLPDGRLAVVARR-E 266 (582)
T ss_dssp ECTTSCEEE-EE-ECSS----CEEEEEECTT-TCCE--E-ECCCSC----SHHHHHCCSEEEEEEECTTSCEEEEEEE-T
T ss_pred ECCCCCEEE-Ec-cCCC----eeEEEEEcCC-CCcE--E-EccCCC----cChhhhhhccccceeEcCCCcEEEEEEc-C
Confidence 999999998 33 2221 3579999998 6765 2 555544 4445567 9999997777776 6
Q ss_pred CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 320 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
+..+||.+ |+..... ...+ ..+.|. +++.++..+.......||+++.++ +.++|
T Consensus 267 g~~~l~~~----g~~~~~~--~~~v---------~~~~~s----dg~~l~~~s~~~~p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 267 GRSAVFID----GERVEAP--QGNH---------GRVVLW----RGKLVTSHTSLSTPPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp TEEEEEET----TEEECCC--SSEE---------EEEEEE----TTEEEEEEEETTEEEEEEEETTCC-EEECC
T ss_pred CcEEEEEE----CCeeccC--CCce---------EEEEec----CCEEEEEEcCCCCCCeEEEEcCCC-ceEEE
Confidence 77777765 5443311 1111 133443 455554445555567899999876 66666
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=161.50 Aligned_cols=203 Identities=12% Similarity=0.048 Sum_probs=131.8
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCCCCchhHHHhhccCCC-cccHHHHHHHHHHHHhCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWG-IVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~~~~~~~~~~~~-~~~~~D~~~~~~~l~~~~~~d 569 (729)
.|.||++||.+.. ...|...+..|++ +||.|+++|+||.|....... +. ....+|+.++++.+. +
T Consensus 21 ~~~vv~lhG~~~~--~~~~~~~~~~l~~~~g~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~~l~~~~-----~ 87 (272)
T 3fsg_A 21 GTPIIFLHGLSLD--KQSTCLFFEPLSNVGQYQRIYLDLPGMGNSDPISP------STSDNVLETLIEAIEEII-----G 87 (272)
T ss_dssp SSEEEEECCTTCC--HHHHHHHHTTSTTSTTSEEEEECCTTSTTCCCCSS------CSHHHHHHHHHHHHHHHH-----T
T ss_pred CCeEEEEeCCCCc--HHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCC------CCHHHHHHHHHHHHHHHh-----C
Confidence 3679999998543 3446666666777 799999999998665433211 11 012455555555532 3
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcc-------------------------------hh
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH-------------------------------KF 617 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~-------------------------------~~ 617 (729)
.+++.++|||+||.+++.++. +|++++++|+.+|............ ..
T Consensus 88 ~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (272)
T 3fsg_A 88 ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSMNVIINNQA 167 (272)
T ss_dssp TCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCTTGGGHHHHHHHCSEESHHH
T ss_pred CCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhcccCHHHHHHHHHHhccCCCch
Confidence 478999999999999999998 9999999999998752211100000 00
Q ss_pred hhhhhhhhc-----CChhhh---h-----hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 618 ESRYIDNLV-----GSEKDY---Y-----EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 618 ~~~~~~~~~-----~~~~~~---~-----~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
...+..... ...... . ...+...+.++++|+|+++|++|..+|++.+.++.+.+. .+++++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~ 243 (272)
T 3fsg_A 168 WHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMVGRNDQVVGYQEQLKLINHNE----NGEIVLLN 243 (272)
T ss_dssp HHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEEETTCTTTCSHHHHHHHTTCT----TEEEEEES
T ss_pred hHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEEeCCCCcCCHHHHHHHHHhcC----CCeEEEec
Confidence 000000000 000000 0 001111347889999999999999999988887776653 57999999
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 685 GEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 685 ~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
++||.+.. +...+..+.+.+|+.+...
T Consensus 244 ~~gH~~~~-~~~~~~~~~i~~fl~~~~~ 270 (272)
T 3fsg_A 244 RTGHNLMI-DQREAVGFHFDLFLDELNS 270 (272)
T ss_dssp SCCSSHHH-HTHHHHHHHHHHHHHHHHC
T ss_pred CCCCCchh-cCHHHHHHHHHHHHHHhhc
Confidence 99997643 4567888899999988654
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-15 Score=157.13 Aligned_cols=224 Identities=16% Similarity=0.103 Sum_probs=134.1
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+...+... +|.++++..+.+. ..|.||++||++++.... .....+...||.|+++|+||.|.+...
T Consensus 15 ~~~~~~~~-~g~~l~~~~~g~~----------~g~~vvllHG~~~~~~~~---~~~~~~~~~~~~vi~~D~~G~G~S~~~ 80 (317)
T 1wm1_A 15 DSGWLDTG-DGHRIYWELSGNP----------NGKPAVFIHGGPGGGISP---HHRQLFDPERYKVLLFDQRGCGRSRPH 80 (317)
T ss_dssp EEEEEECS-SSCEEEEEEEECT----------TSEEEEEECCTTTCCCCG---GGGGGSCTTTEEEEEECCTTSTTCBST
T ss_pred eeeEEEcC-CCcEEEEEEcCCC----------CCCcEEEECCCCCcccch---hhhhhccccCCeEEEECCCCCCCCCCC
Confidence 44456665 7888876555331 125689999986543221 223445567999999999986654321
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH--------
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-------- 609 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~-------- 609 (729)
. .......+++.+.+..+++. ++.+++.|+||||||.+++.++. +|++++++|+.++......
T Consensus 81 ---~---~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 152 (317)
T 1wm1_A 81 ---A---SLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQD 152 (317)
T ss_dssp ---T---CCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTS
T ss_pred ---c---ccccccHHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCCCchhhhhHHhhc
Confidence 0 01112344555545555444 23468999999999999999988 9999999999876432100
Q ss_pred ------------Hhhhcc-----hhhhhhhhhhcC-------------------------Chh-------h---------
Q 004816 610 ------------LRAETH-----KFESRYIDNLVG-------------------------SEK-------D--------- 631 (729)
Q Consensus 610 ------------~~~~~~-----~~~~~~~~~~~~-------------------------~~~-------~--------- 631 (729)
+..... .....+...... ... .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (317)
T 1wm1_A 153 GASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFARIE 232 (317)
T ss_dssp SGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHHHHH
T ss_pred cchhhcHHHHHHHHhhccchhhcchHHHHHhhhcCCCccccccccccccccccchhhccCCcccccccccchhhhHHHhh
Confidence 000000 000000000000 000 0
Q ss_pred --h-h-----h-cC-cccccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHH
Q 004816 632 --Y-Y-----E-KS-PINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTL 700 (729)
Q Consensus 632 --~-~-----~-~s-p~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~ 700 (729)
+ . . .. ....+.+++ +|+|+++|++|.++|++.+..+.+.+. ++++++++++||....++...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~G~~D~~~~~~~~~~l~~~~p----~~~~~~i~~~gH~~~~~~~~~~~~ 308 (317)
T 1wm1_A 233 NHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWP----EAELHIVEGAGHSYDEPGILHQLM 308 (317)
T ss_dssp HHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHCT----TSEEEEETTCCSSTTSHHHHHHHH
T ss_pred hhhhhcccccccchhhHhhcccccCCCEEEEEecCCCCCCHHHHHHHHhhCC----CceEEEECCCCCCCCCcchHHHHH
Confidence 0 0 0 00 123345675 999999999999999999888888775 348999999999765444455566
Q ss_pred HHHHHHHH
Q 004816 701 EQQMVFFA 708 (729)
Q Consensus 701 ~~~~~fl~ 708 (729)
+.+.+|+.
T Consensus 309 ~~i~~f~~ 316 (317)
T 1wm1_A 309 IATDRFAG 316 (317)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 66666553
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=155.25 Aligned_cols=202 Identities=12% Similarity=0.075 Sum_probs=129.5
Q ss_pred CEEEEEcCC-CCCCccccchhhh-HHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 493 PLLVKSHGG-PTSEARGILNLSI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 493 P~vv~~hGg-~~~~~~~~~~~~~-~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
|.||++||. +++.....|...+ ..|+++ |.|+++|+||.|.+...- . .....+++...+..+++.. +.
T Consensus 34 ~~vvllHG~~~~~~~~~~w~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~-----~--~~~~~~~~a~dl~~~l~~l--~~ 103 (286)
T 2puj_A 34 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGFNKSDAVV-----M--DEQRGLVNARAVKGLMDAL--DI 103 (286)
T ss_dssp SEEEEECCCSTTCCHHHHHTTTHHHHHHTT-CEEEEECCTTSTTSCCCC-----C--SSCHHHHHHHHHHHHHHHT--TC
T ss_pred CcEEEECCCCCCCCcHHHHHHHHHHHHhcc-CEEEEECCCCCCCCCCCC-----C--cCcCHHHHHHHHHHHHHHh--CC
Confidence 679999997 3333344566667 777765 999999999866543210 0 0123444444444444432 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh------------hHHhhh---cc-hhhhhhhhhhc-------
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL------------SMLRAE---TH-KFESRYIDNLV------- 626 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~------------~~~~~~---~~-~~~~~~~~~~~------- 626 (729)
+++.|+||||||.+|+.++. +|++++++|+.++.... ...... .. .....+.....
T Consensus 104 ~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (286)
T 2puj_A 104 DRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLIT 183 (286)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGCC
T ss_pred CceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccCC
Confidence 78999999999999999998 99999999999875320 000000 00 00000000000
Q ss_pred ------------CChhh---hh---------hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 627 ------------GSEKD---YY---------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 627 ------------~~~~~---~~---------~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
.++.. +. ..+....+.++++|+|+++|++|.++|++.++++.+.+. .+++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~----~~~~~~ 259 (286)
T 2puj_A 184 EELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID----DARLHV 259 (286)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS----SEEEEE
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCCEEEEEECCCCccCHHHHHHHHHHCC----CCeEEE
Confidence 00100 00 112234567889999999999999999998888877764 569999
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
++++||... .+...++.+.+.+||.+
T Consensus 260 i~~~gH~~~-~e~p~~~~~~i~~fl~~ 285 (286)
T 2puj_A 260 FSKCGAWAQ-WEHADEFNRLVIDFLRH 285 (286)
T ss_dssp ESSCCSCHH-HHTHHHHHHHHHHHHHH
T ss_pred eCCCCCCcc-ccCHHHHHHHHHHHHhc
Confidence 999999753 34567788888899864
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-15 Score=172.82 Aligned_cols=265 Identities=9% Similarity=-0.005 Sum_probs=174.6
Q ss_pred EEEECCEEEEEECCC----CcEEEEeCCCCCCCCeecCCCC---CCCceeeecceecCCCCEEEEEEeccCCCCCCcceE
Q 004816 150 FRIFGDTVIFSNYKD----QRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~----~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~ 222 (729)
..++++.++|..... +.||+.+..+ ++.+.|.... ......+..++|||||++|+|..+..+.. ..+
T Consensus 79 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~----~~~ 152 (710)
T 2xdw_A 79 HFKKGKRYFYFYNTGLQNQRVLYVQDSLE--GEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD----WVT 152 (710)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEESSTT--SCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCS----CEE
T ss_pred CEEECCEEEEEEEcCCceEEEEEEEcCCC--CCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCc----eEE
Confidence 348889998887543 2789999876 6666554321 01124567899999999999998765432 358
Q ss_pred EEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCC--------CCCCcEEEEEEecCCCCeeeeEEecCCCC
Q 004816 223 IVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM--------PWDKAELWVGYISENGDVYKRVCVAGFDP 294 (729)
Q Consensus 223 l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~--------~~~~~~l~~~d~~~~g~~~~~~~~~~~~~ 294 (729)
|+++|+++|+..+++.......+++|||||+.|+|.+.+.... .+...+||++++. ++......+....+.
T Consensus 153 i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~-t~~~~~~~v~~~~~~ 231 (710)
T 2xdw_A 153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLG-TDQSEDILCAEFPDE 231 (710)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETT-SCGGGCEEEECCTTC
T ss_pred EEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECC-CCcccceEEeccCCC
Confidence 9999999998877554332356799999999999998654310 1234679999998 565332334343220
Q ss_pred CccccccCceeCCCCc-EEEEEecCCC-ceEEEEEEcCC------C--eEEEeeccCccccCCcccccCcceeeeeecCC
Q 004816 295 TIVESPTEPKWSSKGE-LFFVTDRKNG-FWNLHKWIESN------N--EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGE 364 (729)
Q Consensus 295 ~~~~~~~~~~wspDG~-l~~~~~~~~g-~~~l~~~d~~~------g--~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~ 364 (729)
. .....+.|||||+ |++.+..... ...||++|+++ + +.+.|+...... ...|++ +
T Consensus 232 ~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~------------d 296 (710)
T 2xdw_A 232 P--KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTN------------E 296 (710)
T ss_dssp T--TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEE------------E
T ss_pred C--eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEec------------c
Confidence 1 2345789999999 8887765222 57899999986 5 466666432111 112332 7
Q ss_pred CCEEEEEEEECC-eEEEEEEECCCCc---eEeeccCCc--ceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc-ceee
Q 004816 365 KNLIACSYRQNG-RSYLGILDDFGHS---LSLLDIPFT--DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK-LKAV 436 (729)
Q Consensus 365 ~~~l~~~s~~~g-~~~ly~~d~~~g~---~~~lt~~~~--~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~-~~~l 436 (729)
++.|++.++.++ ..+|++++++++. ++.|..+.. .+..+ ..+++.+++... .+....|+++++.+|+ .++|
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIF 375 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEEEec
Confidence 888998887654 6789999998874 466665533 45556 344666665554 4445679999986554 4444
Q ss_pred e
Q 004816 437 D 437 (729)
Q Consensus 437 t 437 (729)
+
T Consensus 376 ~ 376 (710)
T 2xdw_A 376 P 376 (710)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=155.06 Aligned_cols=216 Identities=12% Similarity=0.064 Sum_probs=135.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc-cccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 546 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~ 546 (729)
+|.++++.... ..|.||++||...+.. ...|...+..| +.||.|+++|+||.|.+.... . .
T Consensus 13 ~g~~l~y~~~G------------~g~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~~---~-~- 74 (282)
T 1iup_A 13 AGVLTNYHDVG------------EGQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGFGFTDRPE---N-Y- 74 (282)
T ss_dssp TTEEEEEEEEC------------CSSEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCCT---T-C-
T ss_pred CCEEEEEEecC------------CCCeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCCCCCCCCCC---C-C-
Confidence 68888765431 1256999999633222 22455555666 678999999999866543211 0 0
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh----hH---Hhhh-----
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----SM---LRAE----- 613 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~----~~---~~~~----- 613 (729)
....+++.+.+..+++.. +.+++.|+||||||.+|+.++. +|++++++|+.++.... .. ....
T Consensus 75 --~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (282)
T 1iup_A 75 --NYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIE 150 (282)
T ss_dssp --CCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHH
T ss_pred --CCCHHHHHHHHHHHHHHh--CCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcCCCcHH
Confidence 123444444444444432 3468999999999999999998 99999999999875421 00 0000
Q ss_pred -cch-----------hhhhhhhh---hcCCh---hhhhh------------c-CcccccCCCCCCEEEEEeCCCCCCChH
Q 004816 614 -THK-----------FESRYIDN---LVGSE---KDYYE------------K-SPINFVDKFSCPIILFQGLEDKVVPPD 662 (729)
Q Consensus 614 -~~~-----------~~~~~~~~---~~~~~---~~~~~------------~-sp~~~~~~i~~PvL~i~G~~D~~vp~~ 662 (729)
... ....+... ...++ ..+.. . .+...+.++++|+|+++|++|..+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~ 230 (282)
T 1iup_A 151 NMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLS 230 (282)
T ss_dssp HHHHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHH
T ss_pred HHHHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccccccchhhhhhcCCCEEEEecCCCCCCCHH
Confidence 000 00000000 00000 00000 0 011356789999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 663 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 663 ~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
.+.++.+.+. ..++++++++||... .+...++.+.+.+|+.+.
T Consensus 231 ~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 273 (282)
T 1iup_A 231 SSLRLGELID----RAQLHVFGRCGHWTQ-IEQTDRFNRLVVEFFNEA 273 (282)
T ss_dssp HHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCC----CCeEEEECCCCCCcc-ccCHHHHHHHHHHHHhcC
Confidence 8888877764 569999999999753 355678888889999763
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-15 Score=154.60 Aligned_cols=222 Identities=15% Similarity=0.079 Sum_probs=130.9
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+...+... +|..+++..+.+. ..|.||++||++++... ......+...||.|+++|+||.|.+...
T Consensus 12 ~~~~~~~~-~g~~l~y~~~G~~----------~g~pvvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~ 77 (313)
T 1azw_A 12 QQGSLKVD-DRHTLYFEQCGNP----------HGKPVVMLHGGPGGGCN---DKMRRFHDPAKYRIVLFDQRGSGRSTPH 77 (313)
T ss_dssp EEEEEECS-SSCEEEEEEEECT----------TSEEEEEECSTTTTCCC---GGGGGGSCTTTEEEEEECCTTSTTSBST
T ss_pred ccceEEcC-CCCEEEEEecCCC----------CCCeEEEECCCCCcccc---HHHHHhcCcCcceEEEECCCCCcCCCCC
Confidence 44556665 7888886655331 12568999998654322 2223445567999999999986654321
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH--------
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-------- 609 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~-------- 609 (729)
. .......+++.+.+..+++.- +.+++.|+||||||.+++.++. +|++++++|+.++......
T Consensus 78 ---~---~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 149 (313)
T 1azw_A 78 ---A---DLVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFLLRRFELEWFYQE 149 (313)
T ss_dssp ---T---CCTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTS
T ss_pred ---c---ccccccHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccccCchhhhHHHHhh
Confidence 0 011123444444444444442 3468999999999999999998 9999999999876432100
Q ss_pred ------------Hhhhcc-----hhhhhhhhhhc-------------------------CChh--------hh-------
Q 004816 610 ------------LRAETH-----KFESRYIDNLV-------------------------GSEK--------DY------- 632 (729)
Q Consensus 610 ------------~~~~~~-----~~~~~~~~~~~-------------------------~~~~--------~~------- 632 (729)
+..... .....+..... .... .+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (313)
T 1azw_A 150 GASRLFPDAWEHYLNAIPPVERADLMSAFHRRLTSDDEATRLAAAKAWSVWEGATSFLHVDEDFVTGHEDAHFALAFARI 229 (313)
T ss_dssp SHHHHCHHHHHHHHHTSCGGGTTSHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhchHHHHHHhhccCchhhhhhhhhhhhhccccCcchhhhhhhHHhhhhccccccccccccchhccccchhhHHHHh
Confidence 000000 00000000000 0000 00
Q ss_pred -----h--hc-C----cccccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHH
Q 004816 633 -----Y--EK-S----PINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFT 699 (729)
Q Consensus 633 -----~--~~-s----p~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~ 699 (729)
. .. . ....+.+++ +|+|+++|++|.++|++.++++.+.+. ..++++++++||....++...+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~gH~~~~~~~~~~~ 305 (313)
T 1azw_A 230 ENHYFVNGGFFEVEDQLLRDAHRIADIPGVIVHGRYDVVCPLQSAWDLHKAWP----KAQLQISPASGHSAFEPENVDAL 305 (313)
T ss_dssp HHHHHHTGGGCSSTTHHHHTGGGGTTCCEEEEEETTCSSSCHHHHHHHHHHCT----TSEEEEETTCCSSTTSHHHHHHH
T ss_pred hhhhhcccccccccchhhhhcccccCCCEEEEecCCCCcCCHHHHHHHHhhCC----CcEEEEeCCCCCCcCCCccHHHH
Confidence 0 00 0 022345575 999999999999999999888887775 34899999999976444334444
Q ss_pred HHHHHHH
Q 004816 700 LEQQMVF 706 (729)
Q Consensus 700 ~~~~~~f 706 (729)
++.+.+|
T Consensus 306 ~~~i~~f 312 (313)
T 1azw_A 306 VRATDGF 312 (313)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 4444444
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.7e-16 Score=153.13 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=124.9
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHH----hCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV----GSG 566 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~----~~~ 566 (729)
+.|+||++||.+... ..|. .+..|+ +||.|+++|+||.+..... .....++....+..++ ...
T Consensus 15 ~~~~vv~~hG~~~~~--~~~~-~~~~l~-~g~~v~~~d~~g~g~s~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 81 (245)
T 3e0x_A 15 SPNTLLFVHGSGCNL--KIFG-ELEKYL-EDYNCILLDLKGHGESKGQ---------CPSTVYGYIDNVANFITNSEVTK 81 (245)
T ss_dssp CSCEEEEECCTTCCG--GGGT-TGGGGC-TTSEEEEECCTTSTTCCSC---------CCSSHHHHHHHHHHHHHHCTTTT
T ss_pred CCCEEEEEeCCcccH--HHHH-HHHHHH-hCCEEEEecCCCCCCCCCC---------CCcCHHHHHHHHHHHHHhhhhHh
Confidence 458999999985544 3344 555555 8999999999986654311 1123444444444444 112
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChhHHh----hhcc------------------hhhhhhh
Q 004816 567 KADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLR----AETH------------------KFESRYI 622 (729)
Q Consensus 567 ~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~~~~----~~~~------------------~~~~~~~ 622 (729)
.++ ++.++|||+||.+++.++. +|+ ++++|+.+|........ .... .....+.
T Consensus 82 ~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (245)
T 3e0x_A 82 HQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEKYF 158 (245)
T ss_dssp TCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHHHHHH
T ss_pred hcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHHHHHH
Confidence 233 9999999999999998886 577 99999999876551110 0000 0000000
Q ss_pred hhhcCCh-------hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCccc
Q 004816 623 DNLVGSE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695 (729)
Q Consensus 623 ~~~~~~~-------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~ 695 (729)
......+ ......+....+.++++|+|+++|++|..+|++.+.++++.+. .+++++++++||.+.. +.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-~~ 233 (245)
T 3e0x_A 159 ETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVE----NSELKIFETGKHFLLV-VN 233 (245)
T ss_dssp TTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEESSCGGGHHH-HT
T ss_pred HHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCCHHHHHHHHHHcC----CceEEEeCCCCcceEE-ec
Confidence 0000011 1112334455678889999999999999999999888888764 5799999999997543 34
Q ss_pred HHHHHHHHHHH
Q 004816 696 IKFTLEQQMVF 706 (729)
Q Consensus 696 ~~~~~~~~~~f 706 (729)
..+..+.+.+|
T Consensus 234 ~~~~~~~i~~f 244 (245)
T 3e0x_A 234 AKGVAEEIKNF 244 (245)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 44555555555
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-15 Score=150.55 Aligned_cols=229 Identities=12% Similarity=0.130 Sum_probs=155.1
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
|++++..+++.. ++.|+++++.+. ++..++.... ....+..++|||||++|++....... ...||.++++
T Consensus 49 ~spdg~~l~~~~--~~~i~~~d~~~~-~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~-----~~~l~~~~~~ 118 (297)
T 2ojh_A 49 WSPDGKYLLLNS--EGLLYRLSLAGD-PSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEFG-----KSAIYLLPST 118 (297)
T ss_dssp ECTTSSEEEEEE--TTEEEEEESSSC-CSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTTS-----SCEEEEEETT
T ss_pred ECCCCCEEEEEc--CCeEEEEeCCCC-CCceEecccc--ccccccceEECCCCCEEEEEEeCCCC-----cceEEEEECC
Confidence 444455676664 668999999751 2345555331 12456789999999999988744321 3689999999
Q ss_pred CCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 230 GQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 230 ~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
+++.+.+..... ...++|||||++|+|..... ....||.+++. ++.. ..+.... ..+..+.|+|||
T Consensus 119 ~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~-----~~~~l~~~~~~-~~~~---~~~~~~~----~~~~~~~~s~dg 184 (297)
T 2ojh_A 119 GGTPRLMTKNLP-SYWHGWSPDGKSFTYCGIRD-----QVFDIYSMDID-SGVE---TRLTHGE----GRNDGPDYSPDG 184 (297)
T ss_dssp CCCCEECCSSSS-EEEEEECTTSSEEEEEEEET-----TEEEEEEEETT-TCCE---EECCCSS----SCEEEEEECTTS
T ss_pred CCceEEeecCCC-ccceEECCCCCEEEEEECCC-----CceEEEEEECC-CCcc---eEcccCC----CccccceECCCC
Confidence 888888765543 56689999999999877433 23468888776 5553 2233332 445678999999
Q ss_pred c-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC--------CeEEE
Q 004816 310 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--------GRSYL 380 (729)
Q Consensus 310 ~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~--------g~~~l 380 (729)
+ +++.... .+...||.+++.+++.+.+.........+.|++ +++.|++.+... +...|
T Consensus 185 ~~l~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~------------dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 185 RWIYFNSSR-TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP------------SGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp SEEEEEECT-TSSCEEEEEETTSSCEEECCCCSEEEEEEEECT------------TSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred CEEEEEecC-CCCccEEEECCCCCCcEEEecCCcccCCeEECC------------CCCEEEEEEcCCCCCcccccCceEE
Confidence 9 7777765 577899999988888887775443444455554 788888887765 34789
Q ss_pred EEEECCCCceEeecc---CCcceEEe--eeeCCEEEEEEe
Q 004816 381 GILDDFGHSLSLLDI---PFTDIDNI--TLGNDCLFVEGA 415 (729)
Q Consensus 381 y~~d~~~g~~~~lt~---~~~~v~~~--~~~~~~~~~~~~ 415 (729)
+++++++++.+.+.. ....+..+ +++++.+++...
T Consensus 252 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 252 QLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred EEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 999999988766653 23344444 445555555444
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=157.35 Aligned_cols=218 Identities=17% Similarity=0.124 Sum_probs=136.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCC-CCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 546 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~ 546 (729)
+|.++++.... . .|.||++||.. +......|...+..|++. |.|+++|+||.|.+. . . .
T Consensus 24 ~g~~l~y~~~g-----------~-g~~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~Dl~G~G~S~-~---~-~-- 83 (296)
T 1j1i_A 24 GGVETRYLEAG-----------K-GQPVILIHGGGAGAESEGNWRNVIPILARH-YRVIAMDMLGFGKTA-K---P-D-- 83 (296)
T ss_dssp TTEEEEEEEEC-----------C-SSEEEEECCCSTTCCHHHHHTTTHHHHTTT-SEEEEECCTTSTTSC-C---C-S--
T ss_pred CCEEEEEEecC-----------C-CCeEEEECCCCCCcchHHHHHHHHHHHhhc-CEEEEECCCCCCCCC-C---C-C--
Confidence 78888755431 1 25799999973 323344566667777665 999999999766543 1 0 0
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-------HHhhhcc--h
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-------MLRAETH--K 616 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-------~~~~~~~--~ 616 (729)
.....++....+..+++...+ .+++.|+||||||.+++.++. +|++++++|+.++..... ....... .
T Consensus 84 -~~~~~~~~~~dl~~~l~~l~~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (296)
T 1j1i_A 84 -IEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTRE 161 (296)
T ss_dssp -SCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHH
T ss_pred -CCCCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCch
Confidence 012244444444433333222 168999999999999999988 999999999988754210 0000000 0
Q ss_pred hhhhhhhhhcC------------------Ch---hhhh-----------hcCcccccCCCCCCEEEEEeCCCCCCChHHH
Q 004816 617 FESRYIDNLVG------------------SE---KDYY-----------EKSPINFVDKFSCPIILFQGLEDKVVPPDQA 664 (729)
Q Consensus 617 ~~~~~~~~~~~------------------~~---~~~~-----------~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~ 664 (729)
.....+..... .+ ..+. .......+.++++|+|+++|++|.++|++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~~~~~~ 241 (296)
T 1j1i_A 162 GMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETA 241 (296)
T ss_dssp HHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHH
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEECCCcccCHHHH
Confidence 00000000000 00 0000 0112234678899999999999999999998
Q ss_pred HHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 665 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 665 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.++.+.+. ..++++++++||... .+...++.+.+.+|+.+.+.
T Consensus 242 ~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 284 (296)
T 1j1i_A 242 YKFLDLID----DSWGYIIPHCGHWAM-IEHPEDFANATLSFLSLRVD 284 (296)
T ss_dssp HHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHCC----CCEEEEECCCCCCch-hcCHHHHHHHHHHHHhccCC
Confidence 88877764 568999999999754 35567888999999998875
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-15 Score=159.04 Aligned_cols=246 Identities=13% Similarity=0.136 Sum_probs=157.1
Q ss_pred CcEEEEeecc-CCCeE--EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC--Ccccc----------------ch-hhh
Q 004816 457 LPELIEFPTE-VPGQK--AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS--EARGI----------------LN-LSI 514 (729)
Q Consensus 457 ~~~~~~~~~~-~dG~~--l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~--~~~~~----------------~~-~~~ 514 (729)
+..++.|.+. .+|.. +.+.++.|.+. ..+.|+|.+.||..+. .+.+. +. .++
T Consensus 74 ~a~ri~Y~std~~G~p~~~~gtv~~P~~~------~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~ 147 (462)
T 3guu_A 74 ASFQLQYRTTNTQNEAVADVATVWIPAKP------ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPII 147 (462)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECSSC------CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHH
T ss_pred eEEEEEEEEECCCCCEEEEEEEEEecCCC------CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHH
Confidence 4567777765 24554 78889999772 2347999999996432 22211 11 245
Q ss_pred HHH-hhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-
Q 004816 515 QYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F- 591 (729)
Q Consensus 515 ~~l-a~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~- 591 (729)
..| +++||+|+++||+|.+. .|..... ....+.|..+++..+. +.-...+++++|||+||..+++++. +
T Consensus 148 ~~~~l~~G~~Vv~~Dy~G~G~---~y~~~~~---~~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~ 219 (462)
T 3guu_A 148 IGWALQQGYYVVSSDHEGFKA---AFIAGYE---EGMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAE 219 (462)
T ss_dssp HHHHHHTTCEEEEECTTTTTT---CTTCHHH---HHHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEecCCCCCC---cccCCcc---hhHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhCh
Confidence 666 89999999999998664 2221110 0012345554444443 2213479999999999999998876 3
Q ss_pred ---CC-cceEEEEeccccChhHHhhhcch-------------hhhhh------hhhhcC---------------------
Q 004816 592 ---RD-TFKAGASLYGVADLSMLRAETHK-------------FESRY------IDNLVG--------------------- 627 (729)
Q Consensus 592 ---~~-~~~a~v~~~~~~d~~~~~~~~~~-------------~~~~~------~~~~~~--------------------- 627 (729)
|+ .++++++.++..|+......... +...| +...+.
T Consensus 220 ~yapel~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~ 299 (462)
T 3guu_A 220 SYAPELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVV 299 (462)
T ss_dssp HHCTTSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHH
T ss_pred hhcCccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHH
Confidence 33 68999999988877554221000 00000 000000
Q ss_pred ------Ch----------------hhhhhcCccc-----ccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEE
Q 004816 628 ------SE----------------KDYYEKSPIN-----FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 680 (729)
Q Consensus 628 ------~~----------------~~~~~~sp~~-----~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 680 (729)
+. +.+.+...-. ...++++|+|++||.+|.+||+++++++++.++++|.++++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~G~~V~~ 379 (462)
T 3guu_A 300 LTYPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAKGANINF 379 (462)
T ss_dssp HHCTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HhhccCCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCeEE
Confidence 00 0011111100 12356789999999999999999999999999999999999
Q ss_pred EEECCCCcccCCcccHHHHHHHHHHHHHHHhCCCCCCCC-CC
Q 004816 681 VEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADE-II 721 (729)
Q Consensus 681 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~-~~ 721 (729)
++|++++|.... ...+..+++|++++|.+. .... |.
T Consensus 380 ~~y~~~~H~~~~----~~~~~d~l~WL~~r~~G~-~~~~~C~ 416 (462)
T 3guu_A 380 SPYPIAEHLTAE----IFGLVPSLWFIKQAFDGT-TPKVICG 416 (462)
T ss_dssp EEESSCCHHHHH----HHTHHHHHHHHHHHHHTC-CCCCCTT
T ss_pred EEECcCCccCch----hhhHHHHHHHHHHHhCCC-CCCCCCC
Confidence 999999997543 234678899999999866 4434 44
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=171.37 Aligned_cols=225 Identities=16% Similarity=0.096 Sum_probs=150.4
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcE----EEEecCCC
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWA----FVDVNYGG 531 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~----v~~~d~rG 531 (729)
.+.+.+++.+...|..+.+++|.|.+.. .+++|+|+++||+.+... ..+...++.|+++|+. |+.+|++|
T Consensus 166 G~v~~~~~~S~~~g~~~~~~vy~P~~~~-----~~~~PvlvllHG~~~~~~-~~~~~~~~~l~~~g~~~p~iVV~~d~~~ 239 (403)
T 3c8d_A 166 IPAKEIIWKSERLKNSRRVWIFTTGDVT-----AEERPLAVLLDGEFWAQS-MPVWPVLTSLTHRQQLPPAVYVLIDAID 239 (403)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEEC----------CCCCEEEESSHHHHHHT-SCCHHHHHHHHHTTSSCSCEEEEECCCS
T ss_pred CceEEEEEEccccCCcEEEEEEeCCCCC-----CCCCCEEEEeCCHHHhhc-CcHHHHHHHHHHcCCCCCeEEEEECCCC
Confidence 3567888887657888999999997621 467899999999633211 1234467788888875 99999985
Q ss_pred CCCCchhHHHhhccCCCcccHHHH--HHHHHHHHhCC--CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC
Q 004816 532 STGYGREFRERLLGRWGIVDVNDC--CSCATFLVGSG--KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD 606 (729)
Q Consensus 532 s~g~g~~~~~~~~~~~~~~~~~D~--~~~~~~l~~~~--~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d 606 (729)
..+ +..... ......|. ..++.++.++. ..|+++++|+|+||||++|+.++. +|++|+++++.+|..+
T Consensus 240 ~~~-----r~~~~~--~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~ 312 (403)
T 3c8d_A 240 TTH-----RAHELP--CNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYW 312 (403)
T ss_dssp HHH-----HHHHSS--SCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTT
T ss_pred Ccc-----ccccCC--ChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccc
Confidence 221 111111 11123332 34666776653 357899999999999999999988 9999999999999875
Q ss_pred hhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCC
Q 004816 607 LSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 686 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 686 (729)
+...... ....+. +.+.. ........|++++||+.|..+ ..++++++++|+++|+++++++++|
T Consensus 313 ~~~~~~~---~~~~~~-------~~~~~----~~~~~~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~~v~~~~~~G- 376 (403)
T 3c8d_A 313 WPHRGGQ---QEGVLL-------EKLKA----GEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG- 376 (403)
T ss_dssp TTCTTSS---SCCHHH-------HHHHT----TSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC-
T ss_pred cCCCCCC---cHHHHH-------HHHHh----ccccCCCceEEEEeeCCCchh-HHHHHHHHHHHHhCCCCEEEEEeCC-
Confidence 4321000 000000 01111 012345678999999988643 6889999999999999999999999
Q ss_pred CcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 687 QHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 687 gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+|.+ ..+...+...+.||.+...
T Consensus 377 gH~~---~~w~~~l~~~l~~l~~~~~ 399 (403)
T 3c8d_A 377 GHDA---LCWRGGLMQGLIDLWQPLF 399 (403)
T ss_dssp CSCH---HHHHHHHHHHHHHHHGGGT
T ss_pred CCCH---HHHHHHHHHHHHHHhcccc
Confidence 6974 2445667777888877654
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=172.45 Aligned_cols=229 Identities=11% Similarity=0.071 Sum_probs=139.6
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cchhhhH---HHhhCCcEEEEecCCCCCCCchhHHHhh
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQ---YWTSRGWAFVDVNYGGSTGYGREFRERL 543 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~---~la~~G~~v~~~d~rGs~g~g~~~~~~~ 543 (729)
+|.++++..+.+.+ ..+.|+||++||.+++.... .|...+. .|++.||.|+++|+||+ ++|.+-....
T Consensus 92 ~g~~l~y~~~G~~~-------~~~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~-~~G~S~~~~~ 163 (444)
T 2vat_A 92 RDVPVAYKSWGRMN-------VSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGS-PFGSAGPCSP 163 (444)
T ss_dssp EEEEEEEEEESCCC-------TTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTC-SSSSSSTTSB
T ss_pred cceeEEEEEecCCC-------CCCCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCC-CCCCCCCCCC
Confidence 34456655554432 23357899999986555431 1444443 46688999999999984 1232211000
Q ss_pred c---c-------CCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh
Q 004816 544 L---G-------RWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 611 (729)
Q Consensus 544 ~---~-------~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~ 611 (729)
. + ++.....+|+.+.+..+++.- +.++ +.++||||||.+++.++. +|++++++|+.++........
T Consensus 164 ~~~~~~~~~~~~~f~~~t~~~~a~dl~~ll~~l--~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~~~~~~ 241 (444)
T 2vat_A 164 DPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRL--GVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCRQSGWC 241 (444)
T ss_dssp CTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHH--TCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSBCCHHH
T ss_pred CcccccccccccccccccHHHHHHHHHHHHHhc--CCccceEEEEECHHHHHHHHHHHhChHhhheEEEEeccccCCccc
Confidence 0 0 011234555555555554442 3467 999999999999999998 999999999998865421100
Q ss_pred ------------hh-------------------------------cchhhhhhhhhhc----------------------
Q 004816 612 ------------AE-------------------------------THKFESRYIDNLV---------------------- 626 (729)
Q Consensus 612 ------------~~-------------------------------~~~~~~~~~~~~~---------------------- 626 (729)
.. ...+...+.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (444)
T 2vat_A 242 AAWFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRNISSQDAKKEINGTDSG 321 (444)
T ss_dssp HHHHHHHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC--------------------
T ss_pred hhHHHHHHHHHhcCCccccccccccCCcccchhHHHhhhhccccChHHHHHHhccCcccccccccccccccccccccccc
Confidence 00 0000000000000
Q ss_pred --------------------------CChh-------hhhhc--------CcccccCCCCCCEEEEEeCCCCCCChHHHH
Q 004816 627 --------------------------GSEK-------DYYEK--------SPINFVDKFSCPIILFQGLEDKVVPPDQAR 665 (729)
Q Consensus 627 --------------------------~~~~-------~~~~~--------sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~ 665 (729)
.+.. .+... +....+.++++|+|+++|++|.++|++.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~i~~PvLvi~G~~D~~~p~~~~~ 401 (444)
T 2vat_A 322 NSHRAGQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSDGLYSFDEHV 401 (444)
T ss_dssp -------CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEEEEECTTCSSSCHHHHH
T ss_pred ccccccCchhhHHHHHHHHHHHHhhccCccHHHHHHHHhhhhhccccccccHHHHhhcCCCCEEEEEeCCCCCCCHHHHH
Confidence 0000 00000 133446789999999999999999999998
Q ss_pred HHHHHHHhCCCCEEEEEEC-CCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 666 KIYKALKENGLPVALVEYE-GEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 666 ~~~~~l~~~g~~~~~~~~~-~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
++++.+. .+++++++ ++||.... +...++.+.+.+||++++
T Consensus 402 ~l~~~~p----~~~~~~i~~~~GH~~~~-e~p~~~~~~i~~fL~~~l 443 (444)
T 2vat_A 402 EMGRSIP----NSRLCVVDTNEGHDFFV-MEADKVNDAVRGFLDQSL 443 (444)
T ss_dssp HHHHHST----TEEEEECCCSCGGGHHH-HTHHHHHHHHHHHHTC--
T ss_pred HHHHHCC----CcEEEEeCCCCCcchHH-hCHHHHHHHHHHHHHHhc
Confidence 8888775 56999999 89997543 456778888888987665
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-16 Score=162.24 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=84.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++....|.+ ...|+||++||.+.+. ..|...+..|+++||.|+++|+||.|....... .
T Consensus 11 ~g~~l~y~~~G~~~--------~~~~~vv~~hG~~~~~--~~~~~~~~~l~~~g~~vi~~d~~g~g~s~~~~~---~--- 74 (356)
T 2e3j_A 11 RGTRIHAVADSPPD--------QQGPLVVLLHGFPESW--YSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRV---Q--- 74 (356)
T ss_dssp TTEEEEEEEECCTT--------CCSCEEEEECCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCCCCS---G---
T ss_pred CCeEEEEEEecCCC--------CCCCEEEEECCCCCcH--HHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCc---c---
Confidence 78999988776542 2357899999985443 446667888999999999999998665432110 0
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
.....+++...+..+++. ++.+++.++|||+||.+++.++. +|++++++|+.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 75 KAYRIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp GGGSHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred cccCHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 011233333333333332 24578999999999999999988 999999999988654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-15 Score=174.53 Aligned_cols=265 Identities=10% Similarity=0.001 Sum_probs=176.5
Q ss_pred ceEEEECCEEEEEECCC----CcEEEEeCCCCCCCCeecCCCCC---CCceeeecceecCCCCEEEEEEeccCCCCCCcc
Q 004816 148 GAFRIFGDTVIFSNYKD----QRLYKHSIDSKDSSPLPITPDYG---EPLVSYADGIFDPRFNRYVTVREDRRQDALNST 220 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~----~~l~~~d~~~~~~~~~~lt~~~~---~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~ 220 (729)
....++++.++|..... ..||+.+..+ ++.++|+..+. .....+..++|||||++|+|+.+..+.+ .
T Consensus 73 ~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~----~ 146 (695)
T 2bkl_A 73 STPSRRNGRFFYVRTHKDKEKAILYWRQGES--GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAAD----E 146 (695)
T ss_dssp CCCEEETTEEEEEEECTTCSSCEEEEEESTT--SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCS----C
T ss_pred CCCEEECCEEEEEEEcCCCeEEEEEEEcCCC--CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCc----e
Confidence 34557899999987654 3689999877 77888876421 1123578899999999999998765432 3
Q ss_pred eEEEEEEcCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCC-----CCCCcEEEEEEecCCCCeeeeEEecCCCC
Q 004816 221 TEIVAIALNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNM-----PWDKAELWVGYISENGDVYKRVCVAGFDP 294 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~-----~~~~~~l~~~d~~~~g~~~~~~~~~~~~~ 294 (729)
..|+++|+++|+..+... .......++|||||+.|+|.+.+..+. .+...+||++++. ++......+....+.
T Consensus 147 ~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~-t~~~~~~lv~~~~~~ 225 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLG-TEPSKDTVVHERTGD 225 (695)
T ss_dssp CEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETT-SCGGGCEEEECCCCC
T ss_pred EEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECC-CCchhceEEEecCCC
Confidence 689999999998641111 111226799999999999999655310 0235679999998 565322334443321
Q ss_pred CccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEE
Q 004816 295 TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 373 (729)
Q Consensus 295 ~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~ 373 (729)
. .....+.|||||+ |++.+....+...||+++..+++.+.|+........+.| + +++ +|+.++
T Consensus 226 ~--~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~------------~g~-l~~~s~ 289 (695)
T 2bkl_A 226 P--TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-W------------KDR-FYVLTD 289 (695)
T ss_dssp T--TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-E------------TTE-EEEEEC
T ss_pred C--EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-c------------CCc-EEEEEC
Confidence 1 2445789999999 888877622677899998878888888754322222223 1 666 877776
Q ss_pred EC-CeEEEEEEECCCCc---eEeeccC--CcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 374 QN-GRSYLGILDDFGHS---LSLLDIP--FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 374 ~~-g~~~ly~~d~~~g~---~~~lt~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
.+ +...|+++++++++ ++.|..+ ...+..+...++.+++... .+....|+.++++++..++|
T Consensus 290 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 290 EGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYL-KDATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp TTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEE-ETTEEEEEEEETTCCEEEEC
T ss_pred CCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEE-ECCEEEEEEEeCCCCeeEEe
Confidence 54 46789999998876 3566544 3446666444666665554 45556799999876655444
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-16 Score=157.75 Aligned_cols=215 Identities=14% Similarity=0.109 Sum_probs=136.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+.+. ..|+||++||.+... ..|...+..|+ +||.|+++|+||.|......
T Consensus 18 ~g~~l~~~~~g~~----------~~~~vl~lHG~~~~~--~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~-------- 76 (299)
T 3g9x_A 18 LGERMHYVDVGPR----------DGTPVLFLHGNPTSS--YLWRNIIPHVA-PSHRCIAPDLIGMGKSDKPD-------- 76 (299)
T ss_dssp TTEEEEEEEESCS----------SSCCEEEECCTTCCG--GGGTTTHHHHT-TTSCEEEECCTTSTTSCCCC--------
T ss_pred CCeEEEEEecCCC----------CCCEEEEECCCCccH--HHHHHHHHHHc-cCCEEEeeCCCCCCCCCCCC--------
Confidence 7888887766442 236799999985543 45666677775 59999999999876543221
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh---h---------c
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA---E---------T 614 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~---~---------~ 614 (729)
.....+++.+.+..+++. ++.+++.++|||+||.+++.++. +|++++++|+.++......... . .
T Consensus 77 ~~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T 3g9x_A 77 LDYFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRT 154 (299)
T ss_dssp CCCCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCGGGHHHHHHHTS
T ss_pred CcccHHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcchHHHHHHHHHcC
Confidence 123355555555555554 24568999999999999999998 9999999999985433220000 0 0
Q ss_pred -----------chhhhhhhhhhcC---Ch--------------------hhhhhc--------------CcccccCCCCC
Q 004816 615 -----------HKFESRYIDNLVG---SE--------------------KDYYEK--------------SPINFVDKFSC 646 (729)
Q Consensus 615 -----------~~~~~~~~~~~~~---~~--------------------~~~~~~--------------sp~~~~~~i~~ 646 (729)
..+...+...... .. ..+... +....+.++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 234 (299)
T 3g9x_A 155 ADVGRELIIDQNAFIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPV 234 (299)
T ss_dssp SSHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCS
T ss_pred CCcchhhhccchhhHHHhhhhhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhhhhhhhcccCCC
Confidence 0000000000000 00 000000 01122467899
Q ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 647 PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
|+|+++|++|..+|++.+.++.+.+. .+++++++++||.+. .+...++.+.+.+++.+.
T Consensus 235 P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~~~~~~ 293 (299)
T 3g9x_A 235 PKLLFWGTPGVLIPPAEAARLAESLP----NCKTVDIGPGLHYLQ-EDNPDLIGSEIARWLPAL 293 (299)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHST----TEEEEEEEEESSCHH-HHCHHHHHHHHHHHSGGG
T ss_pred CeEEEecCCCCCCCHHHHHHHHhhCC----CCeEEEeCCCCCcch-hcCHHHHHHHHHHHHhhh
Confidence 99999999999999999988887764 568999999999753 244455555555555443
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=156.34 Aligned_cols=226 Identities=10% Similarity=0.055 Sum_probs=134.0
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
.+...+.. +|.++++.... +.|.||++||.+.+. ..|...+..|.+ ||.|+++|+||.|....
T Consensus 13 ~~~~~~~~--~g~~l~~~~~g------------~~~~vv~lHG~~~~~--~~~~~~~~~l~~-~~~v~~~D~~G~G~S~~ 75 (306)
T 3r40_A 13 FGSEWINT--SSGRIFARVGG------------DGPPLLLLHGFPQTH--VMWHRVAPKLAE-RFKVIVADLPGYGWSDM 75 (306)
T ss_dssp CEEEEECC--TTCCEEEEEEE------------CSSEEEEECCTTCCG--GGGGGTHHHHHT-TSEEEEECCTTSTTSCC
T ss_pred CceEEEEe--CCEEEEEEEcC------------CCCeEEEECCCCCCH--HHHHHHHHHhcc-CCeEEEeCCCCCCCCCC
Confidence 34444544 78888866542 236899999985443 456777888877 99999999998765433
Q ss_pred hHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc--
Q 004816 538 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-- 614 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~-- 614 (729)
.... ........+++...+..+++. ++.+++.++|||+||.+++.++. +|++++++|+.++...........
T Consensus 76 ~~~~---~~~~~~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 150 (306)
T 3r40_A 76 PESD---EQHTPYTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEYWQRMNRA 150 (306)
T ss_dssp CCCC---TTCGGGSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHHHHHHCSHH
T ss_pred CCCC---cccCCCCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCccchhhhhhh
Confidence 2110 000112345555555544444 24468999999999999999998 999999999999754321110000
Q ss_pred --------------------------chhhhhhhhhhc-----C--Chh---h-----------------hhhc------
Q 004816 615 --------------------------HKFESRYIDNLV-----G--SEK---D-----------------YYEK------ 635 (729)
Q Consensus 615 --------------------------~~~~~~~~~~~~-----~--~~~---~-----------------~~~~------ 635 (729)
..+...+..... . ..+ . +...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (306)
T 3r40_A 151 YALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDYRAGAYADFE 230 (306)
T ss_dssp HHHHSTHHHHHTSCTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhhHHHHHhhcccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHHHhcccccch
Confidence 000000000000 0 000 0 0000
Q ss_pred ---CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 636 ---SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 636 ---sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
.....+.++++|+|+++|++|.++|.....+.++.+. .+++++++ ++||.+. .+...++.+.+.+||++.
T Consensus 231 ~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~-~~gH~~~-~e~p~~~~~~i~~fl~~~ 303 (306)
T 3r40_A 231 HDKIDVEAGNKIPVPMLALWGASGIAQSAATPLDVWRKWA---SDVQGAPI-ESGHFLP-EEAPDQTAEALVRFFSAA 303 (306)
T ss_dssp HHHHHHHHTCCBCSCEEEEEETTCC------CHHHHHHHB---SSEEEEEE-SSCSCHH-HHSHHHHHHHHHHHHHC-
T ss_pred hhhhhhhhccCCCcceEEEEecCCcccCchhHHHHHHhhc---CCCeEEEe-cCCcCch-hhChHHHHHHHHHHHHhc
Confidence 0001347889999999999999998655555555443 36678888 6799753 356677888888998764
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=157.33 Aligned_cols=204 Identities=13% Similarity=0.069 Sum_probs=127.8
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH-HhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR-ERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~-~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
|.||++||.+.+ ...|...+..|++ +|.|+++|+||.|.+..... ......+ ....+|+.+.++.+ +.+
T Consensus 21 ~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~~~~~~~~~-~~~a~dl~~~l~~l------~~~ 90 (271)
T 1wom_A 21 ASIMFAPGFGCD--QSVWNAVAPAFEE-DHRVILFDYVGSGHSDLRAYDLNRYQTL-DGYAQDVLDVCEAL------DLK 90 (271)
T ss_dssp SEEEEECCTTCC--GGGGTTTGGGGTT-TSEEEECCCSCCSSSCCTTCCTTGGGSH-HHHHHHHHHHHHHT------TCS
T ss_pred CcEEEEcCCCCc--hhhHHHHHHHHHh-cCeEEEECCCCCCCCCCCcccccccccH-HHHHHHHHHHHHHc------CCC
Confidence 789999997443 3456666777765 69999999998765432110 0000000 01134444444433 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh----------------HHhhh----cchhhhhhhhhhcC---
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS----------------MLRAE----THKFESRYIDNLVG--- 627 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~----------------~~~~~----~~~~~~~~~~~~~~--- 627 (729)
++.++||||||.+++.++. +|++++++|+.++..... .+... ...+...+.....+
T Consensus 91 ~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (271)
T 1wom_A 91 ETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPD 170 (271)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCTT
T ss_pred CeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 8999999999999999988 999999999987642100 00000 00000000000000
Q ss_pred ---------------Chhhh-------hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 628 ---------------SEKDY-------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 628 ---------------~~~~~-------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
.+... ...+....+.++++|+|+++|++|..+|++.++.+.+.+. ..+++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~ 246 (271)
T 1wom_A 171 RPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLP----YSSLKQMEA 246 (271)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSCHHHHHHHHHHSS----SEEEEEEEE
T ss_pred chHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCCHHHHHHHHHHCC----CCEEEEeCC
Confidence 00000 0112223467899999999999999999988887777654 469999999
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 686 EQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 686 ~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+||... .+...++.+.+.+|+.+++
T Consensus 247 ~gH~~~-~e~p~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 247 RGHCPH-MSHPDETIQLIGDYLKAHV 271 (271)
T ss_dssp ESSCHH-HHCHHHHHHHHHHHHHHHC
T ss_pred CCcCcc-ccCHHHHHHHHHHHHHhcC
Confidence 999753 3556788889999998763
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=154.28 Aligned_cols=201 Identities=13% Similarity=0.099 Sum_probs=126.8
Q ss_pred CEEEEEcCCC-CCCccccchhhh-HHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 493 PLLVKSHGGP-TSEARGILNLSI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 493 P~vv~~hGg~-~~~~~~~~~~~~-~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
|.||++||.+ +......|...+ ..|++. |.|+++|+||.|.+.... . .....+++...+..+++.. +.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~~-~~vi~~D~~G~G~S~~~~-----~--~~~~~~~~~~~l~~~l~~l--~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVEAG-YRVILLDCPGWGKSDSVV-----N--SGSRSDLNARILKSVVDQL--DI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHHTT-CEEEEECCTTSTTSCCCC-----C--SSCHHHHHHHHHHHHHHHT--TC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHhcC-CeEEEEcCCCCCCCCCCC-----c--cccCHHHHHHHHHHHHHHh--CC
Confidence 4899999963 223334455556 666654 999999999876543221 0 0123555555555555442 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC------------hhHHhhh---cc-hhhhhhhhhhc-------
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD------------LSMLRAE---TH-KFESRYIDNLV------- 626 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d------------~~~~~~~---~~-~~~~~~~~~~~------- 626 (729)
+++.|+||||||.+++.++. +|++++++|+.++... +...... .. .....+.....
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLT 186 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCC
Confidence 78999999999999999988 9999999999887532 0000000 00 00000000000
Q ss_pred ------------CChhhhh------------hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 627 ------------GSEKDYY------------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 627 ------------~~~~~~~------------~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
..+..+. ..+....+.++++|+|+++|++|..+|++.++++.+.+. ..++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~ 262 (289)
T 1u2e_A 187 DALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIA----GSELHI 262 (289)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHST----TCEEEE
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCCeEEEeeCCCCccCHHHHHHHHhhCC----CcEEEE
Confidence 0010000 011224567889999999999999999999988887765 348999
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++++||.... +...++.+.+.+|+.
T Consensus 263 i~~~gH~~~~-e~p~~~~~~i~~fl~ 287 (289)
T 1u2e_A 263 FRDCGHWAQW-EHADAFNQLVLNFLA 287 (289)
T ss_dssp ESSCCSCHHH-HTHHHHHHHHHHHHT
T ss_pred eCCCCCchhh-cCHHHHHHHHHHHhc
Confidence 9999997532 445677777778874
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=156.46 Aligned_cols=216 Identities=15% Similarity=0.083 Sum_probs=134.0
Q ss_pred CC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCC-CCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhcc
Q 004816 468 PG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 545 (729)
Q Consensus 468 dG-~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~ 545 (729)
+| .++++....+ ++.|.||++||. |+......|...+..|++. |.|+++|+||.|.+.... .
T Consensus 21 ~g~~~l~y~~~G~----------g~~~~vvllHG~~pg~~~~~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~~-----~ 84 (291)
T 2wue_A 21 DGPLKLHYHEAGV----------GNDQTVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPGYGHSDKRA-----E 84 (291)
T ss_dssp SSEEEEEEEEECT----------TCSSEEEEECCCCTTCCHHHHTTTTHHHHTTT-SEEEEECCTTSTTSCCCS-----C
T ss_pred CCcEEEEEEecCC----------CCCCcEEEECCCCCccchHHHHHHHHHHHHhc-CEEEEECCCCCCCCCCCC-----C
Confidence 78 8888655421 123689999997 3333344566667777765 999999999866543211 0
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh---------hHH---hh
Q 004816 546 RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---------SML---RA 612 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~---------~~~---~~ 612 (729)
.....+++...+..+++.- +.+++.|+||||||.+++.++. +|++++++|+.++.... ... ..
T Consensus 85 --~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 160 (291)
T 2wue_A 85 --HGQFNRYAAMALKGLFDQL--GLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSK 160 (291)
T ss_dssp --CSSHHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHH
T ss_pred --CCcCHHHHHHHHHHHHHHh--CCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHH
Confidence 0122334333333333321 3468999999999999999998 99999999999875310 000 00
Q ss_pred h---cc-hhhhhhhhhhc------------------CChhh----hhh----cC-----cc--cccCCCCCCEEEEEeCC
Q 004816 613 E---TH-KFESRYIDNLV------------------GSEKD----YYE----KS-----PI--NFVDKFSCPIILFQGLE 655 (729)
Q Consensus 613 ~---~~-~~~~~~~~~~~------------------~~~~~----~~~----~s-----p~--~~~~~i~~PvL~i~G~~ 655 (729)
. .. .....++.... .++.. +.. .+ .. ..+.++++|+|+++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 240 (291)
T 2wue_A 161 FSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGRE 240 (291)
T ss_dssp HHHSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGGCCSCEEEEEETT
T ss_pred HhccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhhCCCCeEEEecCC
Confidence 0 00 00000000000 01100 000 00 11 45678899999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 656 DKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 656 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
|..+|++.++++++.+. .+++++++++||... .+...++.+.+.+|+.
T Consensus 241 D~~~~~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (291)
T 2wue_A 241 DRVNPLDGALVALKTIP----RAQLHVFGQCGHWVQ-VEKFDEFNKLTIEFLG 288 (291)
T ss_dssp CSSSCGGGGHHHHHHST----TEEEEEESSCCSCHH-HHTHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHCC----CCeEEEeCCCCCChh-hhCHHHHHHHHHHHHh
Confidence 99999998888877664 569999999999753 2445677777778774
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-14 Score=148.46 Aligned_cols=238 Identities=14% Similarity=0.171 Sum_probs=169.1
Q ss_pred CceEEEECCEEEEEECC-CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC-CC----Ccc
Q 004816 147 GGAFRIFGDTVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-AL----NST 220 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~-~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~-~~----~~~ 220 (729)
++-++.+++.|+|.... .+.||+++.++ ...++|+.. ..--++|+|++|+|+....... .. -..
T Consensus 18 ~g~~~~~g~~iy~~n~~d~~~ly~~~~dg--~~~~~l~~~--------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~ 87 (302)
T 3s25_A 18 AGLFCESDGEVFFSNTNDNGRLYAMNIDG--SNIHKLSND--------TAMYINADKNYVYYVRNNNQKITSQTFFSYDR 87 (302)
T ss_dssp TTCEEEETTEEEEEEGGGTTEEEEEETTS--CSCEEEEEE--------EEEEEEECSSEEEEEEECC------CCSSCCS
T ss_pred ceEEEEeCCEEEEEeCCCCceEEEEcCCC--CCCEEccCC--------ceeeEEEcCCEEEEEECCCCcccccceeccCC
Confidence 34577899999999754 45899999998 788999875 2234789999999998754210 00 013
Q ss_pred eEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccc
Q 004816 221 TEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 300 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 300 (729)
..||++++++++.++|+.... ..|+|+|++|+|+..... ....||+++++ +... .++... . .
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~~~----~~~s~~g~~Iy~~~~~~~----~~~~Iy~~~~d-Gs~~--~~lt~~-~----~-- 149 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPDPC----IYASLIGNYIYYLHYDTQ----TATSLYRIRID-GEEK--KKIKNH-Y----L-- 149 (302)
T ss_dssp EEEEEEETTSCCCEEEECSCE----EEEEEETTEEEEEEESSS----SCEEEEEEETT-SCCC--EEEESS-C----C--
T ss_pred CeEEEEeCCCCcceEeecCCc----cEEEEeCCEEEEEeecCC----CCceEEEEECC-CCCe--EEEeCC-C----c--
Confidence 689999999998888886543 368999999999973222 34679999998 4332 334433 2 1
Q ss_pred cCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEE
Q 004816 301 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 379 (729)
Q Consensus 301 ~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ 379 (729)
+.++++|+ |+|+.. +..+|++++++++..++|..... ..|. .| +++.|||+...++ .+
T Consensus 150 --~~~~~~g~~iy~t~~---g~~~Iy~~~l~g~~~~~l~~~~~--~~~~-~P------------~g~~iy~t~~~~~-~~ 208 (302)
T 3s25_A 150 --FTCNTSDRYFYYNNP---KNGQLYRYDTASQSEALFYDCNC--YKPV-VL------------DDTNVYYMDVNRD-NA 208 (302)
T ss_dssp --CCSEEETTEEEEECT---TTCCEEEEETTTTEEEEEECSCE--EEEE-EE------------ETTEEEEEEGGGT-TE
T ss_pred --eEeeEECCEEEEEeC---CCceEEEEECCCCCEEEEeCCCc--ccee-ee------------cCCEEEEEEcCCC-cE
Confidence 34678898 888864 56789999999988888764321 1121 12 7889999876555 79
Q ss_pred EEEEECCCCceEeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 380 LGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 380 ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
|++++++++..++|+... +..+.+.++.+++..... ...|+++++++...++|+
T Consensus 209 I~~~~ldG~~~~~Lt~~~--~~~~~~~g~~Iy~~~~~~--~~~i~~~~~DG~~r~~l~ 262 (302)
T 3s25_A 209 IVHVNINNPNPVVLTEAN--IEHYNVYGSLIFYQRGGD--NPALCVVKNDGTGFKELA 262 (302)
T ss_dssp EEEECSSSCCCEECSCSC--EEEEEEETTEEEEEECSS--SCEEEEEETTSCCCEEEE
T ss_pred EEEEECCCCCeEEEeCCC--cceEEECCCEEEEEECCC--CcEEEEEECCCCccEEee
Confidence 999999999999998643 344577788775543322 268999999998876665
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=169.52 Aligned_cols=265 Identities=10% Similarity=0.007 Sum_probs=173.7
Q ss_pred eEEEECCEEEEEECCC----CcEEEEeCC---CCCCCCeecCCCCC---CCceeeecceecCCCCEEEEEEeccCCCCCC
Q 004816 149 AFRIFGDTVIFSNYKD----QRLYKHSID---SKDSSPLPITPDYG---EPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~----~~l~~~d~~---~~~~~~~~lt~~~~---~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~ 218 (729)
...++++.++|..... ..||+.+.. + ++.++|.+.+. .....+..++|||||++|+|..+..+.+
T Consensus 113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e--- 187 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVG--TKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD--- 187 (741)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEEETTSCTT--CCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS---
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCC--CCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc---
Confidence 4458899999887643 378999986 6 66777543210 0013567899999999999998765432
Q ss_pred cceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCC------CCCCcEEEEEEecCCCCeeeeEEecCC
Q 004816 219 STTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM------PWDKAELWVGYISENGDVYKRVCVAGF 292 (729)
Q Consensus 219 ~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~------~~~~~~l~~~d~~~~g~~~~~~~~~~~ 292 (729)
..+|+++|+++|+....+........++|||| +.|+|.+.+.... .....+||++++. ++......+....
T Consensus 188 -~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lg-t~~~~~~lv~~~~ 264 (741)
T 1yr2_A 188 -WRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLG-TPQSADQPVFATP 264 (741)
T ss_dssp -EEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETT-SCGGGCEEEECCT
T ss_pred -eEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECC-CCchhCEEEeccC
Confidence 36899999999987665332222357999999 9999998554310 0014569999987 5543223344433
Q ss_pred CCCccccccCceeCCCCc-EEEEEecC-CCceEEEEEEcCCC--e-EEEeeccCccccCCcccccCcceeeeeecCCCCE
Q 004816 293 DPTIVESPTEPKWSSKGE-LFFVTDRK-NGFWNLHKWIESNN--E-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL 367 (729)
Q Consensus 293 ~~~~~~~~~~~~wspDG~-l~~~~~~~-~g~~~l~~~d~~~g--~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 367 (729)
+.. .....+.|||||+ |++.+.+. .+...||++|++++ + .+.|+........+ +. + +++.
T Consensus 265 ~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~---------~---dg~~ 329 (741)
T 1yr2_A 265 ELP--KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VD---------G---VGDQ 329 (741)
T ss_dssp TCT--TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EE---------E---ETTE
T ss_pred CCC--eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-Ee---------c---cCCE
Confidence 211 2346789999999 88877652 14678999999887 5 67776433211111 11 2 7888
Q ss_pred EEEEEEECC-eEEEEEEECCCC--ceEeeccCCc-ceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 368 IACSYRQNG-RSYLGILDDFGH--SLSLLDIPFT-DIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 368 l~~~s~~~g-~~~ly~~d~~~g--~~~~lt~~~~-~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
|++.++.++ ..+|++++++++ +++.|..... .+..+...++.+++... .+....||.++++++..++|+
T Consensus 330 l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l~ 402 (741)
T 1yr2_A 330 LWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYI-HDAKSQVLAFDLDGKPAGAVS 402 (741)
T ss_dssp EEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEE-ETTEEEEEEEETTSCEEEECB
T ss_pred EEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEE-ECCEEEEEEEeCCCCceeecc
Confidence 998887654 678999999884 5666665433 35555444666665554 445567999998776555554
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=154.82 Aligned_cols=223 Identities=12% Similarity=0.066 Sum_probs=134.0
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
.+...+... +|.++++..+.+.+ +.|.||++||.+.+ ...|...+..|++ ||.|+++|+||.|.+..
T Consensus 5 ~~~~~~~~~-~g~~l~~~~~g~~~---------~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~Dl~G~G~S~~ 71 (285)
T 3bwx_A 5 YEDRYWTSS-DGLRLHFRAYEGDI---------SRPPVLCLPGLTRN--ARDFEDLATRLAG-DWRVLCPEMRGRGDSDY 71 (285)
T ss_dssp SEEEEEECT-TSCEEEEEEECBCT---------TSCCEEEECCTTCC--GGGGHHHHHHHBB-TBCEEEECCTTBTTSCC
T ss_pred cccCeeecC-CCceEEEEEcCCCC---------CCCcEEEECCCCcc--hhhHHHHHHHhhc-CCEEEeecCCCCCCCCC
Confidence 355566666 89999987775432 13569999998543 3556777788876 99999999998765432
Q ss_pred hHHHhhccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecc--ccChhHHh--
Q 004816 538 EFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYG--VADLSMLR-- 611 (729)
Q Consensus 538 ~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~--~~d~~~~~-- 611 (729)
.- ....+.. ...+|+.++++.+ +.+++.++||||||.+|+.++. +|++++++|+..+ ........
T Consensus 72 ~~---~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 142 (285)
T 3bwx_A 72 AK---DPMTYQPMQYLQDLEALLAQE------GIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGPEVSPEGLERI 142 (285)
T ss_dssp CS---SGGGCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHH
T ss_pred CC---CccccCHHHHHHHHHHHHHhc------CCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCcccCcchhHHH
Confidence 10 0001110 1245666666655 2368999999999999999988 9999999998653 22111000
Q ss_pred ----hhc---chhh------hhhhhhhc-C-Chhh--------hh---------hcCc-----c-------------ccc
Q 004816 612 ----AET---HKFE------SRYIDNLV-G-SEKD--------YY---------EKSP-----I-------------NFV 641 (729)
Q Consensus 612 ----~~~---~~~~------~~~~~~~~-~-~~~~--------~~---------~~sp-----~-------------~~~ 641 (729)
... ..+. ........ . .... +. ..++ + ..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (285)
T 3bwx_A 143 RGYVGQGRNFETWMHAARALQESSGDVYPDWDITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGATPQVDMWPLF 222 (285)
T ss_dssp HHHTTCCCEESSHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTCCCSSCCHHHH
T ss_pred HHHhcCCcccccHHHHHHHHHHhhhhcccccChHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhccccchhhHHH
Confidence 000 0000 00000000 0 0000 00 0000 0 011
Q ss_pred CCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 642 DKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 642 ~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.++ ++|+|+++|++|..++++.+.++.+ . .++++++++++||.... +.... ++.+.+|+.+
T Consensus 223 ~~~~~~P~lii~G~~D~~~~~~~~~~~~~----~-~~~~~~~i~~~gH~~~~-e~p~~-~~~i~~fl~~ 284 (285)
T 3bwx_A 223 DALATRPLLVLRGETSDILSAQTAAKMAS----R-PGVELVTLPRIGHAPTL-DEPES-IAAIGRLLER 284 (285)
T ss_dssp HHHTTSCEEEEEETTCSSSCHHHHHHHHT----S-TTEEEEEETTCCSCCCS-CSHHH-HHHHHHHHTT
T ss_pred HHccCCCeEEEEeCCCCccCHHHHHHHHh----C-CCcEEEEeCCCCccchh-hCchH-HHHHHHHHHh
Confidence 223 7999999999999999877666544 3 46899999999997543 33333 4678888754
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-15 Score=142.73 Aligned_cols=171 Identities=11% Similarity=0.042 Sum_probs=118.6
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
+.|.||++||.+.+.. ..|......+...+| .++++|.+ ....+++.+.+..+++. .+
T Consensus 16 ~~~~vv~~HG~~~~~~-~~~~~~~~~~~~~~~---~v~~~~~~---------------~~~~~~~~~~~~~~~~~--~~- 73 (191)
T 3bdv_A 16 QQLTMVLVPGLRDSDD-EHWQSHWERRFPHWQ---RIRQREWY---------------QADLDRWVLAIRRELSV--CT- 73 (191)
T ss_dssp TTCEEEEECCTTCCCT-TSHHHHHHHHCTTSE---ECCCSCCS---------------SCCHHHHHHHHHHHHHT--CS-
T ss_pred CCceEEEECCCCCCch-hhHHHHHHHhcCCeE---EEeccCCC---------------CcCHHHHHHHHHHHHHh--cC-
Confidence 3578999999864432 233333333333444 45665421 12345555555555554 23
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEE
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPII 649 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL 649 (729)
+++.++|||+||.+++.++. +|++++++|+.+|........ .+...+.++++|+|
T Consensus 74 ~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~------------------------~~~~~~~~~~~P~l 129 (191)
T 3bdv_A 74 QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEI------------------------DDRIQASPLSVPTL 129 (191)
T ss_dssp SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGTC------------------------TTTSCSSCCSSCEE
T ss_pred CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccccC------------------------ccccccccCCCCEE
Confidence 79999999999999999998 899999999999976543110 00034567889999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc--ccHHHHHHHHHHHHHHHhC
Q 004816 650 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA--ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 650 ~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~fl~~~l~ 712 (729)
+++|++|.++|++.++++++.+ .+++++++++||.+... ....+.++.+.+|+++..+
T Consensus 130 ii~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~~~ 189 (191)
T 3bdv_A 130 TFASHNDPLMSFTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEFSEILIP 189 (191)
T ss_dssp EEECSSBTTBCHHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTTCS
T ss_pred EEecCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998877 34899999999986432 1334555888888876533
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.2e-16 Score=161.31 Aligned_cols=198 Identities=16% Similarity=0.105 Sum_probs=124.5
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|+||++||.+... ..|...+..+ ||.|+++|+||.|..... .......+++.+.+..+++. ++.++
T Consensus 82 ~~vv~~hG~~~~~--~~~~~~~~~l---g~~Vi~~D~~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~~ 147 (330)
T 3p2m_A 82 PRVIFLHGGGQNA--HTWDTVIVGL---GEPALAVDLPGHGHSAWR-------EDGNYSPQLNSETLAPVLRE--LAPGA 147 (330)
T ss_dssp CSEEEECCTTCCG--GGGHHHHHHS---CCCEEEECCTTSTTSCCC-------SSCBCCHHHHHHHHHHHHHH--SSTTC
T ss_pred CeEEEECCCCCcc--chHHHHHHHc---CCeEEEEcCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHH--hCCCC
Confidence 6799999985443 3354444444 999999999986543311 01122344554444444443 24568
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc-----------------chhh---hhhhhhhc-CChh
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-----------------HKFE---SRYIDNLV-GSEK 630 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~-----------------~~~~---~~~~~~~~-~~~~ 630 (729)
+.|+|||+||.+++.++. +|++++++|+.++........... ..+. ........ ....
T Consensus 148 v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (330)
T 3p2m_A 148 EFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDVK 227 (330)
T ss_dssp CEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCBSCHHHHHHHHHHHCTTSCHH
T ss_pred cEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCccccCHHHHHHHHHhcCCCCCHH
Confidence 999999999999999998 999999999998754321110000 0000 00000000 0000
Q ss_pred hhhh-----------------cC----------cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEE-EEE
Q 004816 631 DYYE-----------------KS----------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA-LVE 682 (729)
Q Consensus 631 ~~~~-----------------~s----------p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~-~~~ 682 (729)
.+.. .. ....+.++++|+|+++|++|.++|++.+.++.+.+. ..+ +++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~~~~l~~~~~----~~~~~~~ 303 (330)
T 3p2m_A 228 SLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPITLVRGGSSGFVTDQDTAELHRRAT----HFRGVHI 303 (330)
T ss_dssp HHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCEEEEEETTCCSSCHHHHHHHHHHCS----SEEEEEE
T ss_pred HHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeeEEE
Confidence 0000 00 012356789999999999999999999988887764 457 999
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
++++||.+. .+...++.+.+.+||++
T Consensus 304 i~~~gH~~~-~e~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 304 VEKSGHSVQ-SDQPRALIEIVRGVLDT 329 (330)
T ss_dssp ETTCCSCHH-HHCHHHHHHHHHHHTTC
T ss_pred eCCCCCCcc-hhCHHHHHHHHHHHHhc
Confidence 999999753 34566777788888754
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-15 Score=155.27 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=82.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+. ..|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+..... .....+
T Consensus 19 ~g~~l~y~~~G------------~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~-~~~~~~ 83 (328)
T 2cjp_A 19 NGLNMHLAELG------------EGPTILFIHGFPEL--WYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPL-NDPSKF 83 (328)
T ss_dssp TTEEEEEEEEC------------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTTSTTCBCCCT-TCGGGG
T ss_pred CCcEEEEEEcC------------CCCEEEEECCCCCc--hHHHHHHHHHHHHCCcEEEEECCCCCCCCCCcCc-CCcccc
Confidence 78888865542 12689999998654 3456777888888999999999998766432200 000011
Q ss_pred Cc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 548 GI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 548 ~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
.. ...+|+.+.++.+.. +.+++.|+||||||.+++.++. +|++++++|+.++.
T Consensus 84 ~~~~~a~dl~~~l~~l~~----~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 138 (328)
T 2cjp_A 84 SILHLVGDVVALLEAIAP----NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH 138 (328)
T ss_dssp SHHHHHHHHHHHHHHHCT----TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred cHHHHHHHHHHHHHHhcC----CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence 11 125566666666521 2478999999999999999998 99999999998753
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=153.57 Aligned_cols=213 Identities=11% Similarity=0.080 Sum_probs=132.5
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 549 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~ 549 (729)
.++++....|. ...|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+...-. ...+..
T Consensus 33 ~~l~y~~~G~~---------~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~~---~~~~~~ 98 (297)
T 2xt0_A 33 LRMHYVDEGPR---------DAEHTFLCLHGEPSW--SFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTD---DAVYTF 98 (297)
T ss_dssp CCEEEEEESCT---------TCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTTSCEESC---GGGCCH
T ss_pred eEEEEEEccCC---------CCCCeEEEECCCCCc--ceeHHHHHHHHHhCCcEEEEeCCCCCCCCCCCCC---cccCCH
Confidence 78886665431 113679999998544 3456777888999999999999998765432110 001111
Q ss_pred -ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh--------HH---hhhcch
Q 004816 550 -VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--------ML---RAETHK 616 (729)
Q Consensus 550 -~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~--------~~---~~~~~~ 616 (729)
...+|+.+.++.+ +.+++.|+||||||.+++.++. +|++++++|+.++..... .+ ......
T Consensus 99 ~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (297)
T 2xt0_A 99 GFHRRSLLAFLDAL------QLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFESWRDFVANSPD 172 (297)
T ss_dssp HHHHHHHHHHHHHH------TCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHh------CCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHHHHHHHhhcccc
Confidence 1144555555554 2368999999999999999998 999999999988743100 00 000000
Q ss_pred -------------hh----hhhhhhhcCCh------hhhhhc--------------CcccccC-CCCCCEEEEEeCCCCC
Q 004816 617 -------------FE----SRYIDNLVGSE------KDYYEK--------------SPINFVD-KFSCPIILFQGLEDKV 658 (729)
Q Consensus 617 -------------~~----~~~~~~~~~~~------~~~~~~--------------sp~~~~~-~i~~PvL~i~G~~D~~ 658 (729)
.. ..|.. .+... ..+... .....+. ++++|+|+++|++|..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~~D~~ 251 (297)
T 2xt0_A 173 LDVGKLMQRAIPGITDAEVAAYDA-PFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPTFMAVGAQDPV 251 (297)
T ss_dssp CCHHHHHHHHSTTCCHHHHHHHHT-TCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCEEEEEETTCSS
T ss_pred cchhHHHhccCccCCHHHHHHHhc-cccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCeEEEEeCCCcc
Confidence 00 00000 00000 001000 0012345 8999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 659 VPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 659 vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+| +.+.++.+.+... ....+.++++||.... ...++.+.+.+|+.
T Consensus 252 ~~-~~~~~~~~~~p~~--~~~~~~~~~~GH~~~~--~p~~~~~~i~~fl~ 296 (297)
T 2xt0_A 252 LG-PEVMGMLRQAIRG--CPEPMIVEAGGHFVQE--HGEPIARAALAAFG 296 (297)
T ss_dssp SS-HHHHHHHHHHSTT--CCCCEEETTCCSSGGG--GCHHHHHHHHHHTT
T ss_pred cC-hHHHHHHHhCCCC--eeEEeccCCCCcCccc--CHHHHHHHHHHHHh
Confidence 99 7888888877543 3344458999998653 56677888888874
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-16 Score=163.70 Aligned_cols=209 Identities=15% Similarity=0.150 Sum_probs=130.5
Q ss_pred CCEEEEEcCCCCCCccc---cch-----------hhhHHHhhCCcEEEEecCCCCCCCchhHHHhh--ccCCC-cccHHH
Q 004816 492 PPLLVKSHGGPTSEARG---ILN-----------LSIQYWTSRGWAFVDVNYGGSTGYGREFRERL--LGRWG-IVDVND 554 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~---~~~-----------~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~--~~~~~-~~~~~D 554 (729)
.|+||++||.+++.... .|. ..++.|+++||.|+++|+||.|.......... ...+. ...++|
T Consensus 50 ~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~d 129 (354)
T 2rau_A 50 NDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWISD 129 (354)
T ss_dssp EEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGGGGGGTTCSHHHHHHH
T ss_pred CCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccccccccCCcHHHHHHH
Confidence 47899999986554311 222 57788999999999999998655432111000 00121 122678
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEEeccccCh---------------hHHhhhc---
Q 004816 555 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADL---------------SMLRAET--- 614 (729)
Q Consensus 555 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-~~~~~a~v~~~~~~d~---------------~~~~~~~--- 614 (729)
+.++++++.++ .+.++++++|||+||.+++.++. + |++++++|+.++.... ..+....
T Consensus 130 ~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (354)
T 2rau_A 130 IKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAKGIYV 207 (354)
T ss_dssp HHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHHHTCCE
T ss_pred HHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhhhcccc
Confidence 88899998775 34579999999999999999988 7 9999999999653211 0000000
Q ss_pred -----c--------------------h--hhhhhhhh-h----cCCh------------------------hhhhhcCcc
Q 004816 615 -----H--------------------K--FESRYIDN-L----VGSE------------------------KDYYEKSPI 638 (729)
Q Consensus 615 -----~--------------------~--~~~~~~~~-~----~~~~------------------------~~~~~~sp~ 638 (729)
. . ....++.. . ..++ ..+...+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2rau_A 208 IPSRGGPNNPIWSYALANPDMPSPDPKYKSISDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLERDLK 287 (354)
T ss_dssp EECSSSTTCTHHHHHHHSTTSCCSSTTSSSHHHHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHHTTTCC
T ss_pred cCCCchhhhHHHHHhccccccCccccchhhHHHHHHHhhhccccCCcccCCCccHHHHHHHHhhhccccccccccCcccc
Confidence 0 0 00000000 0 0000 000112223
Q ss_pred cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc--CCcccHHHHHHHHHHHHHHH
Q 004816 639 NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF--RKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 639 ~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~--~~~~~~~~~~~~~~~fl~~~ 710 (729)
..+.++++|+|+++|++|.++|. .+. .+ ...+++++++++||.. ..++...++.+.+.+||.++
T Consensus 288 ~~l~~i~~P~Lii~G~~D~~~p~-~~~----~l---~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 288 FDYEGILVPTIAFVSERFGIQIF-DSK----IL---PSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp CCCTTCCCCEEEEEETTTHHHHB-CGG----GS---CTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred cccccCCCCEEEEecCCCCCCcc-chh----hh---ccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 44668999999999999987552 222 22 2356999999999975 24456678999999999875
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=156.88 Aligned_cols=214 Identities=14% Similarity=0.112 Sum_probs=134.4
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 549 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~ 549 (729)
.++++....|. ...|.||++||.+.+. ..|...+..|+++||.|+++|+||.|.+...- ....+..
T Consensus 34 ~~l~y~~~G~~---------~~g~~vvllHG~~~~~--~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~---~~~~y~~ 99 (310)
T 1b6g_A 34 LRAHYLDEGNS---------DAEDVFLCLHGEPTWS--YLYRKMIPVFAESGARVIAPDFFGFGKSDKPV---DEEDYTF 99 (310)
T ss_dssp CEEEEEEEECT---------TCSCEEEECCCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCEES---CGGGCCH
T ss_pred eEEEEEEeCCC---------CCCCEEEEECCCCCch--hhHHHHHHHHHhCCCeEEEeCCCCCCCCCCCC---CcCCcCH
Confidence 88887665431 1136799999986543 45667788899999999999999766543211 0011111
Q ss_pred -ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC--hh----------------H
Q 004816 550 -VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD--LS----------------M 609 (729)
Q Consensus 550 -~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d--~~----------------~ 609 (729)
...+|+.+.++.| +.+++.|+||||||.+|+.++. +|++++++|+.++... .. .
T Consensus 100 ~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (310)
T 1b6g_A 100 EFHRNFLLALIERL------DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGFT 173 (310)
T ss_dssp HHHHHHHHHHHHHH------TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHH
T ss_pred HHHHHHHHHHHHHc------CCCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchhhhhhccchHHH
Confidence 1144555555554 2368999999999999999998 9999999999887431 00 0
Q ss_pred Hhhh----cch-------------hh----hhhhhhhcCCh------hhhhh--cC-----------cccccC-CCCCCE
Q 004816 610 LRAE----THK-------------FE----SRYIDNLVGSE------KDYYE--KS-----------PINFVD-KFSCPI 648 (729)
Q Consensus 610 ~~~~----~~~-------------~~----~~~~~~~~~~~------~~~~~--~s-----------p~~~~~-~i~~Pv 648 (729)
.+.. ... +. ..|.. ..... ..+.. .. ....+. +|++|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~ 252 (310)
T 1b6g_A 174 AWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAA-PFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAISFWQNDWNGQT 252 (310)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHT-TCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEE
T ss_pred HHHHHhccCchhhhhhHHhhcCCCCCHHHHHHHhc-ccCCccchHHHHHHHHHhcccccchhhhhhhHhhhhhccccCce
Confidence 0000 000 00 00000 00000 00000 00 012345 899999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
|+++|++|..+| +.+.++.+.+... ....++++++||.... ...++.+.+.+|+.+
T Consensus 253 Lvi~G~~D~~~~-~~~~~~~~~ip~~--~~~~i~~~~~GH~~~~--~p~~~~~~i~~Fl~~ 308 (310)
T 1b6g_A 253 FMAIGMKDKLLG-PDVMYPMKALING--CPEPLEIADAGHFVQE--FGEQVAREALKHFAE 308 (310)
T ss_dssp EEEEETTCSSSS-HHHHHHHHHHSTT--CCCCEEETTCCSCGGG--GHHHHHHHHHHHHHH
T ss_pred EEEeccCcchhh-hHHHHHHHhcccc--cceeeecCCcccchhh--ChHHHHHHHHHHHhc
Confidence 999999999999 8888888877643 2233334999997654 678888999999975
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.9e-16 Score=153.80 Aligned_cols=208 Identities=13% Similarity=0.064 Sum_probs=129.4
Q ss_pred CCCEEEEEcCCCCCCccc--cchhhhHHHhhCCcEEEEecCCCCCC-------Cchh-HH---Hh-hccCC----CcccH
Q 004816 491 KPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTG-------YGRE-FR---ER-LLGRW----GIVDV 552 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~--~~~~~~~~la~~G~~v~~~d~rGs~g-------~g~~-~~---~~-~~~~~----~~~~~ 552 (729)
+.|.||++||...+.... ....+.+.|.+.||.|+.+|+++... ++.. +. .. ....| .....
T Consensus 4 ~~~~vl~lHG~g~~~~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~~~~~~~~ 83 (243)
T 1ycd_A 4 QIPKLLFLHGFLQNGKVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYHSEISHE 83 (243)
T ss_dssp CCCEEEEECCTTCCHHHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSCCCSSGGG
T ss_pred cCceEEEeCCCCccHHHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcccccCCCCcch
Confidence 468999999985443221 12245667777799999999983211 0000 00 00 00111 11234
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CC------CcceEEEEeccccChhHHhhhcchhhhhhhhhh
Q 004816 553 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR------DTFKAGASLYGVADLSMLRAETHKFESRYIDNL 625 (729)
Q Consensus 553 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~------~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 625 (729)
.|+.+++++|.+....+..+++|+|||+||.+|+.++. ++ ..+++++..++......... .... ..
T Consensus 84 ~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~----~~~~---~~ 156 (243)
T 1ycd_A 84 LDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDPE----HPGE---LR 156 (243)
T ss_dssp CCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECTT----STTC---EE
T ss_pred hhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCcccc----cccc---cc
Confidence 56777777776542233468999999999999999886 32 35788888887654311100 0000 00
Q ss_pred cCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC---CCEEEEEECCCCcccCCcccHHHHHHH
Q 004816 626 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG---LPVALVEYEGEQHGFRKAENIKFTLEQ 702 (729)
Q Consensus 626 ~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g---~~~~~~~~~~~gH~~~~~~~~~~~~~~ 702 (729)
+. ..+. ..+..+.++++|+|++||++|.++|++++.++++.++..+ .....++++++||.+... ....+.
T Consensus 157 ~~--~~~~--~~~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~~~~~~~~~~~gH~~~~~---~~~~~~ 229 (243)
T 1ycd_A 157 IT--EKFR--DSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEHPGGHMVPNK---KDIIRP 229 (243)
T ss_dssp EC--GGGT--TTTCCCTTCCCEEEEEEETTCSSSCHHHHHHHHHHHHHHTTTCTTTEEEEEESSSSSCCCC---HHHHHH
T ss_pred cc--hhHH--HhccCcccCCCCEEEEEeCCCCccCHHHHHHHHHHhhhhccccccccEEEecCCCCcCCch---HHHHHH
Confidence 00 0111 1122456688999999999999999999999999998641 112344566789987543 258889
Q ss_pred HHHHHHHHhC
Q 004816 703 QMVFFARVVG 712 (729)
Q Consensus 703 ~~~fl~~~l~ 712 (729)
+.+||+++++
T Consensus 230 i~~fl~~~~~ 239 (243)
T 1ycd_A 230 IVEQITSSLQ 239 (243)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhh
Confidence 9999999887
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-15 Score=151.49 Aligned_cols=216 Identities=10% Similarity=0.008 Sum_probs=136.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+.+ .|+||++||.+.+. ..|...+..|++ +|.|+++|+||.|...... ....
T Consensus 16 ~g~~l~~~~~g~------------~~~vv~lHG~~~~~--~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~----~~~~ 76 (297)
T 2qvb_A 16 AGKRMAYIDEGK------------GDAIVFQHGNPTSS--YLWRNIMPHLEG-LGRLVACDLIGMGASDKLS----PSGP 76 (297)
T ss_dssp TTEEEEEEEESS------------SSEEEEECCTTCCG--GGGTTTGGGGTT-SSEEEEECCTTSTTSCCCS----SCST
T ss_pred CCEEEEEEecCC------------CCeEEEECCCCchH--HHHHHHHHHHhh-cCeEEEEcCCCCCCCCCCC----Cccc
Confidence 788888655521 37899999985543 446666777766 4999999999866543220 0011
Q ss_pred CcccHHHHHHHHHHHHhCCCCCC-CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh---H-------Hhhh--
Q 004816 548 GIVDVNDCCSCATFLVGSGKADE-KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---M-------LRAE-- 613 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~-~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~---~-------~~~~-- 613 (729)
.....+++...+..+++. ++. +++.++|||+||.+++.++. +|++++++|+.++..... . ....
T Consensus 77 ~~~~~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (297)
T 2qvb_A 77 DRYSYGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVFQGFR 154 (297)
T ss_dssp TSSCHHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCccCCCCChHHHHHHHHHh
Confidence 112344554444444443 234 78999999999999999988 999999999999865311 0 0000
Q ss_pred ----------cchhhhhhhhhhc-C--Ch---h------------------hhhh--------------cCcccccCCCC
Q 004816 614 ----------THKFESRYIDNLV-G--SE---K------------------DYYE--------------KSPINFVDKFS 645 (729)
Q Consensus 614 ----------~~~~~~~~~~~~~-~--~~---~------------------~~~~--------------~sp~~~~~~i~ 645 (729)
...+...+..... . .. + .+.. .+....+.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 234 (297)
T 2qvb_A 155 SPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEVVALVNEYRSWLEETD 234 (297)
T ss_dssp STTHHHHHHTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCC
T ss_pred cccchhhhccccHHHHHHHhccccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchhhHHHHHHHHhhccccc
Confidence 0000000000000 0 00 0 0000 01123456789
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+|+|+++|++|.++|++.++++.+.+. . +++++ ++||.+. .+...++.+.+.+|++++.
T Consensus 235 ~P~lii~G~~D~~~~~~~~~~~~~~~~----~-~~~~~-~~gH~~~-~~~p~~~~~~i~~fl~~~~ 293 (297)
T 2qvb_A 235 MPKLFINAEPGAIITGRIRDYVRSWPN----Q-TEITV-PGVHFVQ-EDSPEEIGAAIAQFVRRLR 293 (297)
T ss_dssp SCEEEEEEEECSSSCHHHHHHHHTSSS----E-EEEEE-EESSCGG-GTCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEecCCCCcCCHHHHHHHHHHcC----C-eEEEe-cCccchh-hhCHHHHHHHHHHHHHHHh
Confidence 999999999999999988777765543 3 88888 9999754 3567788899999998864
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-15 Score=149.61 Aligned_cols=204 Identities=14% Similarity=0.095 Sum_probs=124.5
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
+..|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+..... . ...++++.+.+..+++.-. .
T Consensus 8 ~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~----~---~~~~~~~a~dl~~~l~~l~-~ 77 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLG--AWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLD----E---IHTFRDYSEPLMEVMASIP-P 77 (264)
T ss_dssp -CCCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCGG----G---CCSHHHHHHHHHHHHHHSC-T
T ss_pred CCCCeEEEECCCccc--cchHHHHHHHHHhCCCEEEEeecCCCCCCCCCcc----c---ccCHHHHHHHHHHHHHHhC-C
Confidence 345789999998543 3456778888988999999999998765432110 0 1123444333333333211 1
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc-Ch----h----HHhhhcc--h--------------------h
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA-DL----S----MLRAETH--K--------------------F 617 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~-d~----~----~~~~~~~--~--------------------~ 617 (729)
.+++.|+||||||.+++.++. +|++++++|+.++.. .. . .+..... . .
T Consensus 78 ~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (264)
T 2wfl_A 78 DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYGNPENPGMSMIL 157 (264)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEESCTTSCEEEEEC
T ss_pred CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhccCCCCCcchhhh
Confidence 368999999999999999987 999999999987632 10 0 1100000 0 0
Q ss_pred hhhhhhhhc-C--Chhh--hh-h-cCc-------------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCC
Q 004816 618 ESRYIDNLV-G--SEKD--YY-E-KSP-------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 677 (729)
Q Consensus 618 ~~~~~~~~~-~--~~~~--~~-~-~sp-------------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~ 677 (729)
...+..... . ..+. +. . ..+ +......++|+|+++|++|..+|++.++++.+.+. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~p----~ 233 (264)
T 2wfl_A 158 GPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVG----A 233 (264)
T ss_dssp CHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHHC----C
T ss_pred hHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCCHHHHHHHHHhCC----C
Confidence 000000000 0 0000 00 0 000 00001135899999999999999999988888775 3
Q ss_pred EEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 678 VALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 678 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.++++++++||... .+...++.+.+.+|+.
T Consensus 234 ~~~~~i~~~gH~~~-~e~P~~~~~~l~~f~~ 263 (264)
T 2wfl_A 234 DKVKEIKEADHMGM-LSQPREVCKCLLDISD 263 (264)
T ss_dssp SEEEEETTCCSCHH-HHSHHHHHHHHHHHHC
T ss_pred ceEEEeCCCCCchh-hcCHHHHHHHHHHHhh
Confidence 48999999999743 3556677777778764
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=152.03 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=125.8
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~ 570 (729)
.|.||++||.+.+. ..|...+..|++. |.|+++|+||.|.+.... .+.. ...+|+.+.++.+ +.
T Consensus 16 ~~~vvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~~------~~~~~~~a~dl~~~l~~l------~~ 80 (255)
T 3bf7_A 16 NSPIVLVHGLFGSL--DNLGVLARDLVND-HNIIQVDVRNHGLSPREP------VMNYPAMAQDLVDTLDAL------QI 80 (255)
T ss_dssp CCCEEEECCTTCCT--TTTHHHHHHHTTT-SCEEEECCTTSTTSCCCS------CCCHHHHHHHHHHHHHHH------TC
T ss_pred CCCEEEEcCCcccH--hHHHHHHHHHHhh-CcEEEecCCCCCCCCCCC------CcCHHHHHHHHHHHHHHc------CC
Confidence 46799999985443 4567777888766 999999999866543210 1110 1145555555554 23
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc--c-C---hhHHhhhcc-----hh-----hhhhhhhhcCC-----
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV--A-D---LSMLRAETH-----KF-----ESRYIDNLVGS----- 628 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~--~-d---~~~~~~~~~-----~~-----~~~~~~~~~~~----- 628 (729)
+++.++||||||.+++.++. +|++++++|+..+. . . ......... .. ...++.....+
T Consensus 81 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (255)
T 3bf7_A 81 DKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ 160 (255)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCHHHHH
T ss_pred CCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchhHHHH
Confidence 68999999999999999988 99999999987532 1 1 111000000 00 00000000000
Q ss_pred --------------hhh----hhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 629 --------------EKD----YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 629 --------------~~~----~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
... +........+.++++|+|+++|++|..++++.++++.+.+. .+++++++++||..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~ 236 (255)
T 3bf7_A 161 FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFP----QARAHVIAGAGHWV 236 (255)
T ss_dssp HHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTCGGGHHHHHHHCT----TEEECCBTTCCSCH
T ss_pred HHHHhccCCceeecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCCHHHHHHHHHHCC----CCeEEEeCCCCCcc
Confidence 000 00000001245789999999999999999988877766653 57999999999975
Q ss_pred CCcccHHHHHHHHHHHHHHH
Q 004816 691 RKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 691 ~~~~~~~~~~~~~~~fl~~~ 710 (729)
.. +....+.+.+.+|+.+|
T Consensus 237 ~~-e~p~~~~~~i~~fl~~~ 255 (255)
T 3bf7_A 237 HA-EKPDAVLRAIRRYLNDH 255 (255)
T ss_dssp HH-HCHHHHHHHHHHHHHTC
T ss_pred cc-CCHHHHHHHHHHHHhcC
Confidence 33 45577888889998754
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=153.15 Aligned_cols=225 Identities=13% Similarity=0.128 Sum_probs=138.2
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCC
Q 004816 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGST 533 (729)
Q Consensus 455 ~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~ 533 (729)
+.+.+.+++.+...+..+.++++.|++.. +.+++|+|+++||+.... .......+.+++ .+..|+.+++++..
T Consensus 10 ~~~~~~~~~~S~~~~~~~~~~vylP~~y~----~~~~yPvly~l~G~~~~~--~~~~~~~~~l~~~~~~ivV~v~~~~~~ 83 (278)
T 2gzs_A 10 FYHFSATSFDSVDGTRHYRVWTAVPNTTA----PASGYPILYMLDGNAVMD--RLDDELLKQLSEKTPPVIVAVGYQTNL 83 (278)
T ss_dssp SEEEEEEEEECTTSSCEEEEEEEEESSCC----CTTCEEEEEESSHHHHHH--HCCHHHHHHHTTSCCCEEEEEEESSSS
T ss_pred CCceEEEEEEcCCCCceEEEEEECCCCCC----CCCCCCEEEEeeChhHHH--HHHHHHHHHhccCCCeEEEEEcCCCCC
Confidence 44567788887634778999999998733 256789887777753211 111223455555 67888889987532
Q ss_pred CCc-----hhHHHhh------------ccCCCcccHHHHHH-----HHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhC
Q 004816 534 GYG-----REFRERL------------LGRWGIVDVNDCCS-----CATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 591 (729)
Q Consensus 534 g~g-----~~~~~~~------------~~~~~~~~~~D~~~-----~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~ 591 (729)
.+. .++.... ....+ ...++.. ++.++.++..+|++|++|+|+||||++|+.++..
T Consensus 84 ~~~~~~R~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~ 161 (278)
T 2gzs_A 84 PFDLNSRAYDYTPAAESRKTDLHSGRFSRKSG--GSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS 161 (278)
T ss_dssp SCCHHHHHHHTCCGGGGTTCSCC-----CCCC--CHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred cCcccccccccCCCCccccccccccCcCCCcC--CHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC
Confidence 211 1111110 00011 1222222 2334445566788899999999999999988755
Q ss_pred CCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCC--------ChHH
Q 004816 592 RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVV--------PPDQ 663 (729)
Q Consensus 592 ~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~v--------p~~~ 663 (729)
|+.|+++++.+|...+..... ..+.. ...+ . ..-..|+++.+|+.|..+ +..+
T Consensus 162 p~~f~~~~~~s~~~~~~~~~~------~~~~~----------~~~~--~-~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~ 222 (278)
T 2gzs_A 162 SSYFRSYYSASPSLGRGYDAL------LSRVT----------AVEP--L-QFCTKHLAIMEGSATQGDNRETHAVGVLSK 222 (278)
T ss_dssp CSSCSEEEEESGGGSTTHHHH------HHHHH----------TSCT--T-TTTTCEEEEEECCC-----------CHHHH
T ss_pred ccccCeEEEeCcchhcCcchH------HHHHH----------Hhhc--c-CCCCCcEEEEecCccccccccchhhhhHHH
Confidence 999999999999754431100 00000 0000 0 112458999999999864 4789
Q ss_pred HHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 664 ARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 664 ~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+++++++|+++|+++++.++||++|++.. ...+...++||.++
T Consensus 223 ~~~~~~~L~~~g~~~~~~~~~g~~H~~~~----~~~~~~~l~fl~~~ 265 (278)
T 2gzs_A 223 IHTTLTILKDKGVNAVFWDFPNLGHGPMF----NASFRQALLDISGE 265 (278)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCCHHHHH----HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCeeEEEEcCCCCccchh----HHHHHHHHHHHhhC
Confidence 99999999999999999999999997532 12233455566543
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-15 Score=150.66 Aligned_cols=205 Identities=14% Similarity=0.072 Sum_probs=126.9
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
....|+||++||.+. ....|...+..|++. |.|+++|+||.|. +... ......+++...+..+++..
T Consensus 17 ~~~~~~vv~~HG~~~--~~~~~~~~~~~l~~~-~~v~~~d~~G~G~---s~~~-----~~~~~~~~~~~~~~~~l~~~-- 83 (267)
T 3fla_A 17 PDARARLVCLPHAGG--SASFFFPLAKALAPA-VEVLAVQYPGRQD---RRHE-----PPVDSIGGLTNRLLEVLRPF-- 83 (267)
T ss_dssp TTCSEEEEEECCTTC--CGGGGHHHHHHHTTT-EEEEEECCTTSGG---GTTS-----CCCCSHHHHHHHHHHHTGGG--
T ss_pred CCCCceEEEeCCCCC--CchhHHHHHHHhccC-cEEEEecCCCCCC---CCCC-----CCCcCHHHHHHHHHHHHHhc--
Confidence 345689999999844 345667777777665 9999999996543 2111 11123555555555444442
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCc----ceEEEEeccccChh------------HHhhhcch---hhhhhh------
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDT----FKAGASLYGVADLS------------MLRAETHK---FESRYI------ 622 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~----~~a~v~~~~~~d~~------------~~~~~~~~---~~~~~~------ 622 (729)
+.+++.|+|||+||.+++.++. +|++ ++++++..+..... .+...... ......
T Consensus 84 ~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (267)
T 3fla_A 84 GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLADPELL 163 (267)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHSHHHH
T ss_pred CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccCHHHH
Confidence 4578999999999999999998 8876 88888887653211 00000000 000000
Q ss_pred ----hhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHH
Q 004816 623 ----DNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKF 698 (729)
Q Consensus 623 ----~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~ 698 (729)
.....+........+.. ..++++|+|+++|++|..+|++.+.++.+.+.. +++++++++ ||.+.. ++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~g-gH~~~~-~~~~~ 237 (267)
T 3fla_A 164 AMVLPAIRSDYRAVETYRHEP-GRRVDCPVTVFTGDHDPRVSVGEARAWEEHTTG---PADLRVLPG-GHFFLV-DQAAP 237 (267)
T ss_dssp HHHHHHHHHHHHHHHHCCCCT-TCCBSSCEEEEEETTCTTCCHHHHHGGGGGBSS---CEEEEEESS-STTHHH-HTHHH
T ss_pred HHHHHHHHHHHHhhhcccccc-cCcCCCCEEEEecCCCCCCCHHHHHHHHHhcCC---CceEEEecC-Cceeec-cCHHH
Confidence 00000001111111111 157889999999999999999888877666542 589999998 997543 45667
Q ss_pred HHHHHHHHHHHHhC
Q 004816 699 TLEQQMVFFARVVG 712 (729)
Q Consensus 699 ~~~~~~~fl~~~l~ 712 (729)
+.+.+.+|+.+...
T Consensus 238 ~~~~i~~fl~~~~~ 251 (267)
T 3fla_A 238 MIATMTEKLAGPAL 251 (267)
T ss_dssp HHHHHHHHTC----
T ss_pred HHHHHHHHhccccc
Confidence 77888888877654
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-15 Score=149.80 Aligned_cols=206 Identities=13% Similarity=0.058 Sum_probs=129.6
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+.... . ....++++.+.+..+++.-. ..+
T Consensus 4 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~rVia~Dl~G~G~S~~~~----~---~~~~~~~~a~dl~~~l~~l~-~~~ 73 (273)
T 1xkl_A 4 GKHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAASGTDLRKI----E---ELRTLYDYTLPLMELMESLS-ADE 73 (273)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTTSTTCCCCG----G---GCCSHHHHHHHHHHHHHTSC-SSS
T ss_pred CCeEEEECCCCCC--cchHHHHHHHHHhCCCEEEEecCCCCCCCccCc----c---cccCHHHHHHHHHHHHHHhc-cCC
Confidence 3679999998543 345677788898899999999999876543211 0 01234555444444444421 136
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC-----h----hHHhhhcch--h--------------------hh
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD-----L----SMLRAETHK--F--------------------ES 619 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d-----~----~~~~~~~~~--~--------------------~~ 619 (729)
++.|+||||||.+++.++. +|++++++|+.++... . ..+...... + ..
T Consensus 74 ~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (273)
T 1xkl_A 74 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGP 153 (273)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCH
T ss_pred CEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccccccCH
Confidence 8999999999999999987 9999999999886421 0 011000000 0 00
Q ss_pred hhhhhhc-C--Chh--hhh----hc-----------CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEE
Q 004816 620 RYIDNLV-G--SEK--DYY----EK-----------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 679 (729)
Q Consensus 620 ~~~~~~~-~--~~~--~~~----~~-----------sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 679 (729)
.+..... . ..+ .+. .. ..+......++|+|+++|++|..+|++.++++.+.+. ..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~p----~~~ 229 (273)
T 1xkl_A 154 KFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIG----VTE 229 (273)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHC----CSE
T ss_pred HHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCCHHHHHHHHHhCC----CCe
Confidence 0000000 0 000 000 00 0000001136899999999999999999988888775 348
Q ss_pred EEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 680 LVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 680 ~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
++++|++||... .+...++.+.+.+|+.+...
T Consensus 230 ~~~i~~aGH~~~-~e~P~~~~~~i~~fl~~~~~ 261 (273)
T 1xkl_A 230 AIEIKGADHMAM-LCEPQKLCASLLEIAHKYNM 261 (273)
T ss_dssp EEEETTCCSCHH-HHSHHHHHHHHHHHHHHCC-
T ss_pred EEEeCCCCCCch-hcCHHHHHHHHHHHHHHhcc
Confidence 999999999753 35567888899999988654
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-15 Score=151.17 Aligned_cols=212 Identities=12% Similarity=-0.001 Sum_probs=131.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|..+++..+. ..|+||++||.+.+. ..|...+..|+++ |.|+++|+||.|..... .
T Consensus 18 ~g~~l~~~~~g------------~~~~vv~lHG~~~~~--~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~-----~--- 74 (301)
T 3kda_A 18 DGVKLHYVKGG------------QGPLVMLVHGFGQTW--YEWHQLMPELAKR-FTVIAPDLPGLGQSEPP-----K--- 74 (301)
T ss_dssp TTEEEEEEEEE------------SSSEEEEECCTTCCG--GGGTTTHHHHTTT-SEEEEECCTTSTTCCCC-----S---
T ss_pred CCeEEEEEEcC------------CCCEEEEECCCCcch--hHHHHHHHHHHhc-CeEEEEcCCCCCCCCCC-----C---
Confidence 79998866653 236899999985443 5567778888888 99999999987654432 1
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh-------------
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA------------- 612 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~------------- 612 (729)
.....+++...+..+++.- +.++ +.++|||+||.+++.++. +|++++++|+.++.........
T Consensus 75 ~~~~~~~~~~~l~~~l~~l--~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (301)
T 3kda_A 75 TGYSGEQVAVYLHKLARQF--SPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVW 152 (301)
T ss_dssp SCSSHHHHHHHHHHHHHHH--CSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGGSBSEETTEECSST
T ss_pred CCccHHHHHHHHHHHHHHc--CCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccchhhhcchhhhhhh
Confidence 1123344444444333331 3356 999999999999999998 9999999999998531100000
Q ss_pred -----hc-c------------hhhhhhhhhhcC-----Chh---h-----------------hh--------hcCccccc
Q 004816 613 -----ET-H------------KFESRYIDNLVG-----SEK---D-----------------YY--------EKSPINFV 641 (729)
Q Consensus 613 -----~~-~------------~~~~~~~~~~~~-----~~~---~-----------------~~--------~~sp~~~~ 641 (729)
.. . .+...+...... ..+ . +. .......+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (301)
T 3kda_A 153 HFSFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALNESVRQNAELAKTR 232 (301)
T ss_dssp HHHHHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHHHHHHHHHHHTTSC
T ss_pred hHHHhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhccchhhcccchhhc
Confidence 00 0 000000100000 000 0 00 00001123
Q ss_pred CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 642 DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 642 ~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+++++|+|+++|++| +++.....+.+ .-.++++++++++||.+. .+...++.+.+.+|+++.-
T Consensus 233 ~~i~~P~l~i~G~~D--~~~~~~~~~~~----~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~~l~~~~ 295 (301)
T 3kda_A 233 LQMPTMTLAGGGAGG--MGTFQLEQMKA----YAEDVEGHVLPGCGHWLP-EECAAPMNRLVIDFLSRGR 295 (301)
T ss_dssp BCSCEEEEEECSTTS--CTTHHHHHHHT----TBSSEEEEEETTCCSCHH-HHTHHHHHHHHHHHHTTSC
T ss_pred cccCcceEEEecCCC--CChhHHHHHHh----hcccCeEEEcCCCCcCch-hhCHHHHHHHHHHHHhhCc
Confidence 388999999999999 66665555543 334689999999999753 3556677777777776643
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.63 E-value=9.1e-15 Score=150.22 Aligned_cols=218 Identities=11% Similarity=0.021 Sum_probs=139.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++.+..+.+ .|+||++||.+.+. ..|...+..|+++ |.|+++|+||.|...... ....
T Consensus 17 ~g~~l~~~~~g~------------~~~vv~lHG~~~~~--~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~----~~~~ 77 (302)
T 1mj5_A 17 KGRRMAYIDEGT------------GDPILFQHGNPTSS--YLWRNIMPHCAGL-GRLIACDLIGMGDSDKLD----PSGP 77 (302)
T ss_dssp TTEEEEEEEESC------------SSEEEEECCTTCCG--GGGTTTGGGGTTS-SEEEEECCTTSTTSCCCS----SCST
T ss_pred CCEEEEEEEcCC------------CCEEEEECCCCCch--hhhHHHHHHhccC-CeEEEEcCCCCCCCCCCC----CCCc
Confidence 788888655421 37899999985543 4456667777665 899999999866543220 0011
Q ss_pred CcccHHHHHHHHHHHHhCCCCCC-CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh---hH-------Hhhh--
Q 004816 548 GIVDVNDCCSCATFLVGSGKADE-KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---SM-------LRAE-- 613 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~-~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~---~~-------~~~~-- 613 (729)
.....+++.+.+..+++. ++. +++.++|||+||.+++.++. +|++++++|+.+|.... .. ....
T Consensus 78 ~~~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (302)
T 1mj5_A 78 ERYAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFR 155 (302)
T ss_dssp TSSCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhhhhhhHHHHHHHHHHh
Confidence 113455555555555444 234 78999999999999999998 99999999999986531 10 0000
Q ss_pred ----------cchhhhhhhhhhc-C--Chh---h------------------hhh--------------cCcccccCCCC
Q 004816 614 ----------THKFESRYIDNLV-G--SEK---D------------------YYE--------------KSPINFVDKFS 645 (729)
Q Consensus 614 ----------~~~~~~~~~~~~~-~--~~~---~------------------~~~--------------~sp~~~~~~i~ 645 (729)
...+...+..... . ..+ . +.. .+....+.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 235 (302)
T 1mj5_A 156 SQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESP 235 (302)
T ss_dssp STTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTTCC
T ss_pred ccchhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhhHHHHHHHHhhhhccC
Confidence 0000000000000 0 000 0 000 01123456789
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCC
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 713 (729)
+|+|+++|++|.++|++.++++.+.+. . +++++ ++||.+. .+...++.+.+.+|+.+....
T Consensus 236 ~P~l~i~g~~D~~~~~~~~~~~~~~~~----~-~~~~~-~~gH~~~-~e~p~~~~~~i~~fl~~~~~~ 296 (302)
T 1mj5_A 236 IPKLFINAEPGALTTGRMRDFCRTWPN----Q-TEITV-AGAHFIQ-EDSPDEIGAAIAAFVRRLRPA 296 (302)
T ss_dssp SCEEEEEEEECSSSSHHHHHHHTTCSS----E-EEEEE-EESSCGG-GTCHHHHHHHHHHHHHHHSCC
T ss_pred CCeEEEEeCCCCCCChHHHHHHHHhcC----C-ceEEe-cCcCccc-ccCHHHHHHHHHHHHHhhccc
Confidence 999999999999999987777665543 3 88889 9999754 356778899999999987763
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-13 Score=144.43 Aligned_cols=283 Identities=12% Similarity=0.044 Sum_probs=164.7
Q ss_pred CccCceEEcC-CCcEEEEeecCCC-CCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTE-AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~-~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 166 (729)
..+.++.++| ++.+|........ .....++.++..+ ++....++.+ .......++++++.+++....++.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~-------~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-LEVTQAIHND-------LKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-CCEEEEEEES-------SCCCSEEEETTTTEEEEEETTTTE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-CeEEEEEecC-------CCcceEEECCCCCEEEEEecCCCE
Confidence 4566889999 7888776642210 0123466666652 2333222211 011233455556678888777789
Q ss_pred EEEEeCCCCCCCC-eecCCCCCC-----CceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-C
Q 004816 167 LYKHSIDSKDSSP-LPITPDYGE-----PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-G 239 (729)
Q Consensus 167 l~~~d~~~~~~~~-~~lt~~~~~-----~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~ 239 (729)
|+++|+++ ++. ..+...... .......+.|||||+++++..... ...|+++|+++++...... .
T Consensus 113 v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------~~~i~~~d~~~~~~~~~~~~~ 183 (353)
T 3vgz_A 113 VTAIDAKT--GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-------ESVIWVVDGGNIKLKTAIQNT 183 (353)
T ss_dssp EEEEETTT--CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-------SCEEEEEETTTTEEEEEECCC
T ss_pred EEEEeCCC--CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-------CceEEEEcCCCCceEEEecCC
Confidence 99999987 554 333322100 011246688999999876665322 2579999999887765544 3
Q ss_pred CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCC
Q 004816 240 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 319 (729)
Q Consensus 240 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~ 319 (729)
.......+|||||++|++... ...|+++|+. +++............. .....+.|+|||+.+|....
T Consensus 184 ~~~~~~~~~s~dg~~l~~~~~--------~~~i~~~d~~-~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~-- 250 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYTTNA--------DGELITIDTA-DNKILSRKKLLDDGKE--HFFINISLDTARQRAFITDS-- 250 (353)
T ss_dssp CTTCCCCEEETTTTEEEEECT--------TSEEEEEETT-TTEEEEEEECCCSSSC--CCEEEEEEETTTTEEEEEES--
T ss_pred CCccceEEECCCCCEEEEEcC--------CCeEEEEECC-CCeEEEEEEcCCCCCC--cccceEEECCCCCEEEEEeC--
Confidence 333567899999999877642 3469999988 6765322222111101 23445789999994455544
Q ss_pred CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcc
Q 004816 320 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD 399 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~ 399 (729)
+...|+++|+.+++......... + ..+.|.+ +++.+|++...++ .|+++|.++++..........
T Consensus 251 ~~~~v~~~d~~~~~~~~~~~~~~----~------~~~~~s~---dg~~l~v~~~~~~--~v~~~d~~~~~~~~~~~~~~~ 315 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNILAKVAAPE----S------LAVLFNP---ARNEAYVTHRQAG--KVSVIDAKSYKVVKTFDTPTH 315 (353)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS----C------CCEEEET---TTTEEEEEETTTT--EEEEEETTTTEEEEEEECCSE
T ss_pred CCCEEEEEECCCCcEEEEEEcCC----C------ceEEECC---CCCEEEEEECCCC--eEEEEECCCCeEEEEEecCCC
Confidence 34678899998887655443211 1 1234443 6777776654444 577779888776543332233
Q ss_pred eEEe--eeeCCEEEEEEeC
Q 004816 400 IDNI--TLGNDCLFVEGAS 416 (729)
Q Consensus 400 v~~~--~~~~~~~~~~~~~ 416 (729)
...+ +++++.+++....
T Consensus 316 ~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 316 PNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEEECTTSCEEEEEEEC
T ss_pred CCeEEEcCCCCEEEEEEcc
Confidence 4444 3444445554443
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-15 Score=150.16 Aligned_cols=200 Identities=11% Similarity=0.071 Sum_probs=126.7
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+.+. ..|...+..|++. |.|+++|+||.|.+.... .. ....+++...+..+++. .+.++
T Consensus 17 ~~vvllHG~~~~~--~~~~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~-----~~--~~~~~~~~~dl~~~l~~--l~~~~ 84 (269)
T 2xmz_A 17 QVLVFLHGFLSDS--RTYHNHIEKFTDN-YHVITIDLPGHGEDQSSM-----DE--TWNFDYITTLLDRILDK--YKDKS 84 (269)
T ss_dssp EEEEEECCTTCCG--GGGTTTHHHHHTT-SEEEEECCTTSTTCCCCT-----TS--CCCHHHHHHHHHHHHGG--GTTSE
T ss_pred CeEEEEcCCCCcH--HHHHHHHHHHhhc-CeEEEecCCCCCCCCCCC-----CC--ccCHHHHHHHHHHHHHH--cCCCc
Confidence 4599999985543 4456677778765 999999999876543211 00 12345555555444444 23468
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH-------h------h-----hcchhhhh------hhh----
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML-------R------A-----ETHKFESR------YID---- 623 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~-------~------~-----~~~~~~~~------~~~---- 623 (729)
+.++||||||.+|+.++. +|++++++|+.++....... . . ....+... +..
T Consensus 85 ~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (269)
T 2xmz_A 85 ITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKLPLFQSQLEL 164 (269)
T ss_dssp EEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTSGGGGGGGGS
T ss_pred EEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHHHHhCccccccccC
Confidence 999999999999999998 99999999999875432100 0 0 00000000 000
Q ss_pred ------hh-----cCChhh----hhh------cCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 624 ------NL-----VGSEKD----YYE------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 624 ------~~-----~~~~~~----~~~------~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
.. ...... +.. .+....+.++++|+|+++|++|..+|++... +.+.+ ..+++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~-~~~~~----~~~~~~~ 239 (269)
T 2xmz_A 165 PVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFVQIAKK-MANLI----PNSKCKL 239 (269)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHHHHHHH-HHHHS----TTEEEEE
T ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccCHHHHH-HHhhC----CCcEEEE
Confidence 00 000000 000 1112346778999999999999988876543 54443 3579999
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
++++||.... +...++.+.+.+|+.+.
T Consensus 240 i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 240 ISATGHTIHV-EDSDEFDTMILGFLKEE 266 (269)
T ss_dssp ETTCCSCHHH-HSHHHHHHHHHHHHHHH
T ss_pred eCCCCCChhh-cCHHHHHHHHHHHHHHh
Confidence 9999997643 45678888899999865
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-15 Score=147.81 Aligned_cols=202 Identities=14% Similarity=0.060 Sum_probs=126.6
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+.... .. ...++++.+.+..+++.-. ..++
T Consensus 4 ~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~----~~---~~~~~~~a~dl~~~l~~l~-~~~~ 73 (257)
T 3c6x_A 4 AHFVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAASGVDPRQI----EE---IGSFDEYSEPLLTFLEALP-PGEK 73 (257)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG----GG---CCSHHHHTHHHHHHHHTSC-TTCC
T ss_pred CcEEEEcCCccC--cCCHHHHHHHHHhCCCEEEEeCCCCCCCCCCCc----cc---ccCHHHHHHHHHHHHHhcc-ccCC
Confidence 579999998533 445777888999999999999999876543211 00 1224444444444444321 1368
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEecccc-C----hh----HHhhhcch--------------------hhhhhh
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA-D----LS----MLRAETHK--------------------FESRYI 622 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~-d----~~----~~~~~~~~--------------------~~~~~~ 622 (729)
+.|+||||||.+++.++. +|++++++|+.++.. . .. .+...... ....+.
T Consensus 74 ~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (257)
T 3c6x_A 74 VILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLL 153 (257)
T ss_dssp EEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccccHHHH
Confidence 999999999999999998 999999999987642 1 00 01000000 000000
Q ss_pred hhhc-C--Chh--hhh-h-cCc-------------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 623 DNLV-G--SEK--DYY-E-KSP-------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 623 ~~~~-~--~~~--~~~-~-~sp-------------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
.... . ..+ .+. . ..+ .......++|+|+++|++|..+|++.++++.+.+. ..++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~~----~~~~~~ 229 (257)
T 3c6x_A 154 RENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYK----PDKVYK 229 (257)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSC----CSEEEE
T ss_pred HHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccCHHHHHHHHHHCC----CCeEEE
Confidence 0000 0 000 000 0 001 00001125899999999999999998888887764 348999
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+|++||.. ..+...++.+.+.+|+++
T Consensus 230 i~~~gH~~-~~e~P~~~~~~l~~f~~~ 255 (257)
T 3c6x_A 230 VEGGDHKL-QLTKTKEIAEILQEVADT 255 (257)
T ss_dssp CCSCCSCH-HHHSHHHHHHHHHHHHHH
T ss_pred eCCCCCCc-ccCCHHHHHHHHHHHHHh
Confidence 99999974 335667888888888875
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=137.99 Aligned_cols=168 Identities=17% Similarity=0.062 Sum_probs=118.3
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCc---EEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGW---AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~---~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
.|+||++||.... ...|..+++.|+++|| .|+.+|++|.+..... ..+++...++.+++. .
T Consensus 3 ~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~~~~v~~~d~~g~g~s~~~------------~~~~~~~~~~~~~~~--~ 66 (181)
T 1isp_A 3 HNPVVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYN------------NGPVLSRFVQKVLDE--T 66 (181)
T ss_dssp CCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHHH------------HHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCcCCC--HhHHHHHHHHHHHcCCCCccEEEEecCCCCCchhh------------hHHHHHHHHHHHHHH--c
Confidence 3679999998543 4556778899999998 6999999976543221 134444444444443 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-C--CCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCC
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-F--RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 645 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~--~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~ 645 (729)
+.+++.++|||+||.+++.++. + |++++++|+.++....... ..+.+ . ....+
T Consensus 67 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~------------~~~~~-------~-----~~~~~ 122 (181)
T 1isp_A 67 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG------------KALPG-------T-----DPNQK 122 (181)
T ss_dssp CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS------------BCCCC-------S-----CTTCC
T ss_pred CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccc------------ccCCC-------C-----CCccC
Confidence 4578999999999999999987 6 8899999999987543210 00000 0 11235
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+|+|+++|++|.++|++.+. -...+++++++++|.+.... .+..+.+.+||.+.
T Consensus 123 ~p~l~i~G~~D~~v~~~~~~---------~~~~~~~~~~~~gH~~~~~~--~~~~~~i~~fl~~~ 176 (181)
T 1isp_A 123 ILYTSIYSSADMIVMNYLSR---------LDGARNVQIHGVGHIGLLYS--SQVNSLIKEGLNGG 176 (181)
T ss_dssp CEEEEEEETTCSSSCHHHHC---------CBTSEEEEESSCCTGGGGGC--HHHHHHHHHHHTTT
T ss_pred CcEEEEecCCCccccccccc---------CCCCcceeeccCchHhhccC--HHHHHHHHHHHhcc
Confidence 79999999999999997432 22458999999999865433 36778888888654
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.61 E-value=8e-15 Score=147.50 Aligned_cols=213 Identities=8% Similarity=0.024 Sum_probs=128.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+.++ ..|+||++||.+.+. ..|...+..|++ +|.|+++|+||.|.+... .
T Consensus 7 ~g~~l~~~~~g~~----------~~~~vv~lHG~~~~~--~~~~~~~~~L~~-~~~v~~~D~~G~G~S~~~-----~--- 65 (264)
T 3ibt_A 7 NGTLMTYSESGDP----------HAPTLFLLSGWCQDH--RLFKNLAPLLAR-DFHVICPDWRGHDAKQTD-----S--- 65 (264)
T ss_dssp TTEECCEEEESCS----------SSCEEEEECCTTCCG--GGGTTHHHHHTT-TSEEEEECCTTCSTTCCC-----C---
T ss_pred CCeEEEEEEeCCC----------CCCeEEEEcCCCCcH--hHHHHHHHHHHh-cCcEEEEccccCCCCCCC-----c---
Confidence 6777776655432 247899999985443 456677777755 599999999987654332 1
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEEeccccChhH-Hhhh-----------
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADLSM-LRAE----------- 613 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-~~~~~a~v~~~~~~d~~~-~~~~----------- 613 (729)
.....+++.+.+..+++. .+.+++.++|||+||.+++.++. + |++++++|+.++...... +...
T Consensus 66 ~~~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (264)
T 3ibt_A 66 GDFDSQTLAQDLLAFIDA--KGIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQPHPGFWQQLAEGQHPTEYV 143 (264)
T ss_dssp SCCCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSSCCHHHHHHHHHTTCTTTHH
T ss_pred cccCHHHHHHHHHHHHHh--cCCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCCcChhhcchhhcccChhhHH
Confidence 112344444444444443 23468999999999999999998 8 999999999987541100 0000
Q ss_pred --cchhhhhh-------------hhhhc-CChhhhh------------hcCcccccCCCCCCEEEEEeCCCCCC--ChHH
Q 004816 614 --THKFESRY-------------IDNLV-GSEKDYY------------EKSPINFVDKFSCPIILFQGLEDKVV--PPDQ 663 (729)
Q Consensus 614 --~~~~~~~~-------------~~~~~-~~~~~~~------------~~sp~~~~~~i~~PvL~i~G~~D~~v--p~~~ 663 (729)
.......+ ..... .....+. ..++...+.++++|+|++||..|... +++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~~~~~~~~~~~ 223 (264)
T 3ibt_A 144 AGRQSFFDEWAETTDNADVLNHLRNEMPWFHGEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIYSQPLSQDYRQL 223 (264)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEECCSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHhhhhccchhHHHHHHHhccchhhccchhhcccccCCCeEEEEecCCccchhhHHH
Confidence 00000000 00000 0000010 11223556789999999987544433 3444
Q ss_pred HHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 664 ARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 664 ~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
...+.+.+ ..+++++++++||... .+...++.+.+.+||+
T Consensus 224 ~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 224 QLEFAAGH----SWFHPRHIPGRTHFPS-LENPVAVAQAIREFLQ 263 (264)
T ss_dssp HHHHHHHC----TTEEEEECCCSSSCHH-HHCHHHHHHHHHHHTC
T ss_pred HHHHHHhC----CCceEEEcCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 44444433 3579999999999653 3456677777777764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-14 Score=168.71 Aligned_cols=267 Identities=11% Similarity=0.038 Sum_probs=185.8
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
..+..|.|+ ++.++|+.. .++...||..+.++ +..+.++... ......|+++++.|+|.. ++.||
T Consensus 204 ~~v~~~~~s-~d~l~~~~~---~dg~~~l~~~~~~g-~~~~~l~~~~--------~~~~~~~SpDG~~la~~~--~~~i~ 268 (1045)
T 1k32_A 204 THVSSPVIV-GHRIYFITD---IDGFGQIYSTDLDG-KDLRKHTSFT--------DYYPRHLNTDGRRILFSK--GGSIY 268 (1045)
T ss_dssp SCCEEEEEE-TTEEEEEEC---TTSSCEEEEEETTS-CSCEECCCCC--------SSCEEEEEESSSCEEEEE--TTEEE
T ss_pred CcccceEEe-CCEEEEEEe---ccCceEEEEEeCCC-CcceEecCCC--------CcceeeEcCCCCEEEEEe--CCEEE
Confidence 345688999 558888764 34667899887652 3555555432 112346778888888874 67899
Q ss_pred EEeCCCCCCCCeecCCCCCCC-------ceeeecceec-CCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC
Q 004816 169 KHSIDSKDSSPLPITPDYGEP-------LVSYADGIFD-PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS 240 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~-------~~~~~~~~~S-PdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~ 240 (729)
++++.+ +....+....... ...+..++|| |||++|++... ..|+++++.+++.++++...
T Consensus 269 ~~d~~~--~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~----------~~i~~~~~~~~~~~~~~~~~ 336 (1045)
T 1k32_A 269 IFNPDT--EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR----------GQAFIQDVSGTYVLKVPEPL 336 (1045)
T ss_dssp EECTTT--CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET----------TEEEEECTTSSBEEECSCCS
T ss_pred EecCCc--eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEc----------CEEEEEcCCCCceEEccCCC
Confidence 999965 5555554421000 0134678899 99999999872 46999999999888887666
Q ss_pred C-eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEE-EEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec
Q 004816 241 D-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELW-VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 317 (729)
Q Consensus 241 ~-~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~-~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~ 317 (729)
. ....+.|| ||++|+|.+. ...|| +++++ +++. ..+. +.. ..+..++|||||+ |++...+
T Consensus 337 ~~~~~~~~~s-dg~~l~~~s~--------~~~l~~~~d~~-~~~~--~~l~-~~~----~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 337 RIRYVRRGGD-TKVAFIHGTR--------EGDFLGIYDYR-TGKA--EKFE-ENL----GNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp CEEEEEECSS-SEEEEEEEET--------TEEEEEEEETT-TCCE--EECC-CCC----CSEEEEEECTTSSEEEEEETT
T ss_pred cceEEeeeEc-CCCeEEEEEC--------CCceEEEEECC-CCCc--eEec-CCc----cceeeeEECCCCCEEEEECCC
Confidence 6 67789999 9999999872 34699 99988 5654 2233 433 4557789999999 7766544
Q ss_pred CCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC-------CeEEEEEEECCCCc
Q 004816 318 KNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHS 389 (729)
Q Consensus 318 ~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~-------g~~~ly~~d~~~g~ 389 (729)
..|+++|+++++.+.++ .....+....|++ |++.|++.+... +...|+++|+++++
T Consensus 400 ----~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp------------DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 400 ----FEIMTVDLETGKPTVIERSREAMITDFTISD------------NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp ----SEEEEEETTTCCEEEEEECSSSCCCCEEECT------------TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred ----CeEEEEECCCCceEEeccCCCCCccceEECC------------CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 37899999999888877 3333444556665 888888877653 46789999999999
Q ss_pred eEeeccCCcceEEe--eeeCCEEEEEEeC
Q 004816 390 LSLLDIPFTDIDNI--TLGNDCLFVEGAS 416 (729)
Q Consensus 390 ~~~lt~~~~~v~~~--~~~~~~~~~~~~~ 416 (729)
.+.++.....+..+ +++++.++ +.+.
T Consensus 464 ~~~l~~~~~~~~~~~~spdG~~l~-~~s~ 491 (1045)
T 1k32_A 464 IFAATTENSHDYAPAFDADSKNLY-YLSY 491 (1045)
T ss_dssp EEECSCSSSBEEEEEECTTSCEEE-EEES
T ss_pred EEEeeCCCcccCCceEcCCCCEEE-EEec
Confidence 88888766555554 44555554 4444
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-14 Score=149.25 Aligned_cols=217 Identities=16% Similarity=0.130 Sum_probs=137.9
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++....+ ++.|.||++||.+.+. ..|...+..|++. |.|+++|+||.|.+... ..
T Consensus 15 ~g~~l~y~~~G~----------g~~~pvvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~-----~~-- 74 (316)
T 3afi_E 15 LGSSMAYRETGA----------QDAPVVLFLHGNPTSS--HIWRNILPLVSPV-AHCIAPDLIGFGQSGKP-----DI-- 74 (316)
T ss_dssp TTEEEEEEEESC----------TTSCEEEEECCTTCCG--GGGTTTHHHHTTT-SEEEEECCTTSTTSCCC-----SS--
T ss_pred CCEEEEEEEeCC----------CCCCeEEEECCCCCch--HHHHHHHHHHhhC-CEEEEECCCCCCCCCCC-----CC--
Confidence 688887665432 1125799999986543 4566677777654 99999999976654321 11
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC---hhHHh------------
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSMLR------------ 611 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d---~~~~~------------ 611 (729)
....+++.+.+..+++.- +.+++.|+||||||.+|+.++. +|++++++|+.++... +....
T Consensus 75 -~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
T 3afi_E 75 -AYRFFDHVRYLDAFIEQR--GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEVAEEQDHAE 151 (316)
T ss_dssp -CCCHHHHHHHHHHHHHHT--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTCCCCGGGHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHc--CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccchhhccccccch
Confidence 123455555544444442 3478999999999999999998 9999999999886321 11000
Q ss_pred ------hh--cch-----------hhhhhhhh-hcC--Ch---hhhh-----------------hcCc------------
Q 004816 612 ------AE--THK-----------FESRYIDN-LVG--SE---KDYY-----------------EKSP------------ 637 (729)
Q Consensus 612 ------~~--~~~-----------~~~~~~~~-~~~--~~---~~~~-----------------~~sp------------ 637 (729)
.. ... +...+... ... .. +.|. ....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (316)
T 3afi_E 152 AARAVFRKFRTPGEGEAMILEANAFVERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIAGEPADVYEALQ 231 (316)
T ss_dssp HHHHHHHHHTSTTHHHHHHTTSCHHHHTTTGGGCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBTTBSHHHHHHHH
T ss_pred hHHHHHHHhcCCchhhHHHhccchHHHHhcccccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhccccccchhhhhHHH
Confidence 00 000 00000000 000 00 0000 0000
Q ss_pred --ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 638 --INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 638 --~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
...+.++++|+|+++|++|..+|++.++++.+.+. ..++++++++||... .+...++.+.+.+||.+...
T Consensus 232 ~~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~GH~~~-~e~p~~~~~~i~~fl~~~~~ 303 (316)
T 3afi_E 232 SAHAALAASSYPKLLFTGEPGALVSPEFAERFAASLT----RCALIRLGAGLHYLQ-EDHADAIGRSVAGWIAGIEA 303 (316)
T ss_dssp HHHHHHHHCCSCEEEEEEEECSSSCHHHHHHHHHHSS----SEEEEEEEEECSCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCCeEEEecCCCCccCHHHHHHHHHhCC----CCeEEEcCCCCCCch-hhCHHHHHHHHHHHHhhcCC
Confidence 01133589999999999999999988888877664 568999999999753 35677888999999987654
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-15 Score=154.35 Aligned_cols=198 Identities=13% Similarity=0.086 Sum_probs=122.5
Q ss_pred CCCEEEEEcCCCCCCccc-cchhhhHHHhhCCcEEEEecC----CCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC
Q 004816 491 KPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNY----GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 565 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~-~~~~~~~~la~~G~~v~~~d~----rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 565 (729)
..|+||++||.+.+...+ .|...+..| +.||.|+++|+ ||.|.+. .. ...+|+.++++++.+.
T Consensus 37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~S~---~~--------~~~~d~~~~~~~l~~~ 104 (335)
T 2q0x_A 37 ARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIGSGPQD---HA--------HDAEDVDDLIGILLRD 104 (335)
T ss_dssp SSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTTSCSCC---HH--------HHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCCCCCcc---cc--------CcHHHHHHHHHHHHHH
Confidence 357899999975443333 245566777 78999999964 6544322 11 1267888888988775
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccccChhH-------Hhh---hcchhh-----hhhhh--hh
Q 004816 566 GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVADLSM-------LRA---ETHKFE-----SRYID--NL 625 (729)
Q Consensus 566 ~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~d~~~-------~~~---~~~~~~-----~~~~~--~~ 625 (729)
.+.+++.|+||||||.+++.++. +|++++++|+.++..+... +.. ...... ..... ..
T Consensus 105 --l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (335)
T 2q0x_A 105 --HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPENPLFTPEGCAARKEHVEKLMAEGRGEDSLAMLKH 182 (335)
T ss_dssp --SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCTTSTTTSHHHHHHHHHHHHHHHHHTCTTCGGGGTTT
T ss_pred --cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccchhcccCHHHHHHHHHHHHHHhhccCccccccchhh
Confidence 34579999999999999998886 6899999999988653210 000 000000 00000 00
Q ss_pred cC---Chhhh-------------h------hcCcccccCCCCCCEEEEEeCCCCCCChHH-HHHHHHHHHhCCCCEE---
Q 004816 626 VG---SEKDY-------------Y------EKSPINFVDKFSCPIILFQGLEDKVVPPDQ-ARKIYKALKENGLPVA--- 679 (729)
Q Consensus 626 ~~---~~~~~-------------~------~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~-~~~~~~~l~~~g~~~~--- 679 (729)
.. ....+ . ..+....+.+|++|+|+++|++|.++|++. ...+.+.+.+.-...+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLvi~G~~D~~vp~~~~~~~~~~~l~~~~~~~~~~~ 262 (335)
T 2q0x_A 183 YDIPITPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLLLMLAHNVQYKPSDEEVGTVLEGVRDHTGCNRVTV 262 (335)
T ss_dssp CSSCCCHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCEEEEEECCTTCCCCHHHHHHHHHHHHHHSSSSCEEE
T ss_pred ccCccCHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCeEEEEecCCCCCChhhhHHHHHHHHHHhcCcccccc
Confidence 00 00000 0 001123467899999999999999999864 2233444433211223
Q ss_pred -----E-----EEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 680 -----L-----VEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 680 -----~-----~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+ +++|++|| +..+.+.+||.+..
T Consensus 263 ~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~~ 295 (335)
T 2q0x_A 263 SYFNDTCDELRRVLKAAES---------EHVAAILQFLADED 295 (335)
T ss_dssp EECCCEECTTSCEEECCHH---------HHHHHHHHHHHHHH
T ss_pred ccccchhhhhhcccCCCCC---------HHHHHHHHHHHhhh
Confidence 5 78999999 23778889998764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-14 Score=164.59 Aligned_cols=257 Identities=7% Similarity=-0.027 Sum_probs=168.3
Q ss_pred EEECCEEEEEECCCC----cEEEEeC---CCCCC--CCeecCCCC---CCCc-eeeecceec-CCCCEEEEEEeccCCCC
Q 004816 151 RIFGDTVIFSNYKDQ----RLYKHSI---DSKDS--SPLPITPDY---GEPL-VSYADGIFD-PRFNRYVTVREDRRQDA 216 (729)
Q Consensus 151 ~~~~~~i~~~~~~~~----~l~~~d~---~~~~~--~~~~lt~~~---~~~~-~~~~~~~~S-PdG~~l~~~~~~~~~~~ 216 (729)
.+.++.++|.....+ .||+.+. .+ + ..+.|.... +... .....++|| |||++|+|+.+..+..
T Consensus 123 ~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~--~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~- 199 (751)
T 2xe4_A 123 YVYGKYRYYTREVKGKPYKIYCRVFTDKEPG--DVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNE- 199 (751)
T ss_dssp EEETTEEEEEEECTTCCSCEEEEEETTSCTT--CTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSS-
T ss_pred eEECCEEEEEEECCCCceeEEEEEcCCCCCC--CCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCc-
Confidence 467888888876544 4778876 43 4 445444321 0011 256788999 9999999998765432
Q ss_pred CCcceEEEEEEcCCC-ce--EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC
Q 004816 217 LNSTTEIVAIALNGQ-NI--QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 293 (729)
Q Consensus 217 ~~~~~~l~~~dl~~g-~~--~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~ 293 (729)
..+||++|+++| +. ..+. ....+++|||||++|+|++.++.+ ...+||++++. ++......+..+.+
T Consensus 200 ---~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~---~~~~v~~~~lg-t~~~~~~lv~~~~~ 269 (751)
T 2xe4_A 200 ---VYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETL---RENKVWRHVMG-KLQSEDVCLYEEHN 269 (751)
T ss_dssp ---CEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTC---CEEEEEEEETT-SCGGGCEEEEECCC
T ss_pred ---eEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCC---CCCEEEEEECC-CCchhcEEEEecCC
Confidence 367999999998 62 1222 124579999999999999866532 33579999997 55432233443332
Q ss_pred CCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCC--eE--EEeeccCccccCCcccccCcceeeeeecCCCCEE
Q 004816 294 PTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN--EV--LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLI 368 (729)
Q Consensus 294 ~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g--~~--~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l 368 (729)
. .....+.|||||+ |++.+.. .+...||++|++++ +. +.|+... ..+.|++. |. +++.|
T Consensus 270 ~---~~~~~~~~SpDg~~l~~~~~~-~~~~~l~~~d~~~~~~~~~~~~l~~~~---~~~~~s~~-----~~----~g~~l 333 (751)
T 2xe4_A 270 P---LFSAFMYKAADTNTLCIGSQS-PETAEVHLLDLRKGNAHNTLEIVRPRE---KGVRYDVQ-----MH----GTSHL 333 (751)
T ss_dssp T---TCEEEEEECTTSSEEEEEEEC-SSCEEEEEEESSSCTTCCCEEESSCCC---TTCCEEEE-----EE----TTTEE
T ss_pred C---ceEEEEEECCCCCEEEEEecC-CCCceEEEEECCCCCCCceeEEeecCC---CCceEEEe-----ee----eCCEE
Confidence 1 2335688999999 8888776 56788999999875 45 6665322 23445431 11 57889
Q ss_pred EEEEEEC--CeEEEEEEECCC-CceEe-eccCCc--ceEEeeeeCCEEEEEEeCCCCCceEEEEEc-------CCCc-ce
Q 004816 369 ACSYRQN--GRSYLGILDDFG-HSLSL-LDIPFT--DIDNITLGNDCLFVEGASGVEPSSVAKVTL-------DDHK-LK 434 (729)
Q Consensus 369 ~~~s~~~--g~~~ly~~d~~~-g~~~~-lt~~~~--~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~-------~~~~-~~ 434 (729)
++.++++ +..+||.+++++ ++++. |....+ .+..+...++.+++. ...+....|+++++ ++++ .+
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~-~~~~g~~~l~~~dl~~~~~~~~~g~~~~ 412 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVA-GRRAGLTRIWTMMADSQDGVFKAGTGLR 412 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEE-EEETTEEEEEEEECCTTTSCCCTTTCCE
T ss_pred EEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEE-EEeCCEEEEEEEecccccccccCCccce
Confidence 9999876 678999999986 45555 444333 345555556655544 44556678999996 5666 66
Q ss_pred eee
Q 004816 435 AVD 437 (729)
Q Consensus 435 ~lt 437 (729)
+|+
T Consensus 413 ~l~ 415 (751)
T 2xe4_A 413 EVV 415 (751)
T ss_dssp ECC
T ss_pred EEC
Confidence 654
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=149.09 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=128.6
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++.... ..|.||++||.+.+ ...|...+..|+++ |.|+++|+||.|.+... . . ...
T Consensus 17 ~g~~l~y~~~G------------~g~~lvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~-~--~-~~~ 77 (294)
T 1ehy_A 17 PDVKIHYVREG------------AGPTLLLLHGWPGF--WWEWSKVIGPLAEH-YDVIVPDLRGFGDSEKP-D--L-NDL 77 (294)
T ss_dssp SSCEEEEEEEE------------CSSEEEEECCSSCC--GGGGHHHHHHHHTT-SEEEEECCTTSTTSCCC-C--T-TCG
T ss_pred CCEEEEEEEcC------------CCCEEEEECCCCcc--hhhHHHHHHHHhhc-CEEEecCCCCCCCCCCC-c--c-ccc
Confidence 78888765432 13679999998644 35567777888776 99999999987654432 0 0 000
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc-Chh-H--------------H
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA-DLS-M--------------L 610 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~-d~~-~--------------~ 610 (729)
.....+++.+.+..+++.- +.+++.|+||||||.+++.++. +|++++++|+.++.. ... . +
T Consensus 78 ~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (294)
T 1ehy_A 78 SKYSLDKAADDQAALLDAL--GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWYSQF 155 (294)
T ss_dssp GGGCHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHc--CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchhhccchhccCceEEEe
Confidence 0122444444444444432 3468999999999999999998 999999999998632 110 0 0
Q ss_pred hh--------hc-----chhhhhhhhhhcC-----Ch---hhhh-----------------hc--Cccc-----ccCCCC
Q 004816 611 RA--------ET-----HKFESRYIDNLVG-----SE---KDYY-----------------EK--SPIN-----FVDKFS 645 (729)
Q Consensus 611 ~~--------~~-----~~~~~~~~~~~~~-----~~---~~~~-----------------~~--sp~~-----~~~~i~ 645 (729)
.. .. ..+...+...... .. +.+. .. .... .+.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 235 (294)
T 1ehy_A 156 HQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHTMSD 235 (294)
T ss_dssp TTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGSCBC
T ss_pred cCcchhHHHhccchhHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHhhhhhhcCCcccCcCC
Confidence 00 00 0000000000000 00 0010 00 0001 123789
Q ss_pred CCEEEEEeCCCCCCCh-HHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 646 CPIILFQGLEDKVVPP-DQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~-~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
+|+|+++|++|..+|+ .....+.+.+ ..+++++++++||... .+...++.+.+.+|+
T Consensus 236 ~P~Lvi~G~~D~~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl 293 (294)
T 1ehy_A 236 LPVTMIWGLGDTCVPYAPLIEFVPKYY----SNYTMETIEDCGHFLM-VEKPEIAIDRIKTAF 293 (294)
T ss_dssp SCEEEEEECCSSCCTTHHHHHHHHHHB----SSEEEEEETTCCSCHH-HHCHHHHHHHHHHHC
T ss_pred CCEEEEEeCCCCCcchHHHHHHHHHHc----CCCceEEeCCCCCChh-hhCHHHHHHHHHHHh
Confidence 9999999999999884 4555554443 2579999999999743 355667777777775
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-13 Score=165.90 Aligned_cols=295 Identities=11% Similarity=0.063 Sum_probs=187.6
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccc--cccc--cCCceEE-EECCEEEEEECCC
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRT--TAQE--YGGGAFR-IFGDTVIFSNYKD 164 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~--~~~~--~~~~~~~-~~~~~i~~~~~~~ 164 (729)
...+.|+| |+.++|.. .++ |+.++.. ++....+......... .-+. .....|+ +++..+++.. .
T Consensus 247 ~~~~~~SpDG~~la~~~-----~~~--i~~~d~~-~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~ 316 (1045)
T 1k32_A 247 YYPRHLNTDGRRILFSK-----GGS--IYIFNPD-TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--R 316 (1045)
T ss_dssp SCEEEEEESSSCEEEEE-----TTE--EEEECTT-TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--T
T ss_pred cceeeEcCCCCEEEEEe-----CCE--EEEecCC-ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--c
Confidence 34678999 88888863 233 5555543 2222222211100000 0011 1223455 5566788876 6
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE-EEEcCCCceEEeeeCCCee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV-AIALNGQNIQVLVSGSDFY 243 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~-~~dl~~g~~~~lt~~~~~~ 243 (729)
+.|+++++.+ +..++++... ...+..++|| ||+.|++..++ ..|| ++++++++.+.++......
T Consensus 317 ~~i~~~~~~~--~~~~~~~~~~---~~~~~~~~~s-dg~~l~~~s~~---------~~l~~~~d~~~~~~~~l~~~~~~~ 381 (1045)
T 1k32_A 317 GQAFIQDVSG--TYVLKVPEPL---RIRYVRRGGD-TKVAFIHGTRE---------GDFLGIYDYRTGKAEKFEENLGNV 381 (1045)
T ss_dssp TEEEEECTTS--SBEEECSCCS---CEEEEEECSS-SEEEEEEEETT---------EEEEEEEETTTCCEEECCCCCCSE
T ss_pred CEEEEEcCCC--CceEEccCCC---cceEEeeeEc-CCCeEEEEECC---------CceEEEEECCCCCceEecCCccce
Confidence 7899999987 7777777652 2367889999 99999988761 5799 9999999988888444566
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecC----
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK---- 318 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~---- 318 (729)
..++|||||++|++... ...|+++|++ +|+. ..+..+.. ..+..++|||||+ |++.....
T Consensus 382 ~~~~~SpDG~~la~~~~--------~~~v~~~d~~-tg~~--~~~~~~~~----~~v~~~~~SpDG~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVAND--------RFEIMTVDLE-TGKP--TVIERSRE----AMITDFTISDNSRFIAYGFPLKHGET 446 (1045)
T ss_dssp EEEEECTTSSEEEEEET--------TSEEEEEETT-TCCE--EEEEECSS----SCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred eeeEECCCCCEEEEECC--------CCeEEEEECC-CCce--EEeccCCC----CCccceEECCCCCeEEEEecCccccc
Confidence 78999999999998872 2469999998 7775 33443443 4557899999999 87777642
Q ss_pred --CCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe---------------EEEE
Q 004816 319 --NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR---------------SYLG 381 (729)
Q Consensus 319 --~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~---------------~~ly 381 (729)
.+...|+++|+++++.+.++........+.|++ +++.|++.+.+.+. ..+|
T Consensus 447 ~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~sp------------dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA------------DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 514 (1045)
T ss_dssp CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECT------------TSCEEEEEESCCCCCEECSSSSCEECCSCBEEE
T ss_pred cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcC------------CCCEEEEEecccCCcCcchhccccccccCceeE
Confidence 234689999999998777775443444456665 77788877753321 1334
Q ss_pred EEECC------------------------CC--ceEeeccCCcceEEe-eeeCCEEEEE----------EeCCCCCceEE
Q 004816 382 ILDDF------------------------GH--SLSLLDIPFTDIDNI-TLGNDCLFVE----------GASGVEPSSVA 424 (729)
Q Consensus 382 ~~d~~------------------------~g--~~~~lt~~~~~v~~~-~~~~~~~~~~----------~~~~~~~~~ly 424 (729)
.+.+. +. .+..++.+...+..+ ..+++.+++. .++...+..+|
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~ 594 (1045)
T 1k32_A 515 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL 594 (1045)
T ss_dssp EEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEE
T ss_pred EEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEE
Confidence 43322 11 122333333445555 3444555553 13445577899
Q ss_pred EEEcCCCcceeee
Q 004816 425 KVTLDDHKLKAVD 437 (729)
Q Consensus 425 ~~d~~~~~~~~lt 437 (729)
++|+.+++.+.+.
T Consensus 595 ~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 595 KYDVKTRKVTEVK 607 (1045)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCcEEEee
Confidence 9999998865543
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=153.37 Aligned_cols=201 Identities=15% Similarity=0.054 Sum_probs=127.2
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhC--CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~--G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
...|.||++||.+.+ ...|...++.|+++ ||.|+++|+||.+....... ...+|+.+.+..+.+..
T Consensus 34 ~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~s~~~~~---------~~~~~~~~~l~~~~~~~- 101 (302)
T 1pja_A 34 ASYKPVIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFDGRESLRPLW---------EQVQGFREAVVPIMAKA- 101 (302)
T ss_dssp -CCCCEEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSCSGGGGSCHH---------HHHHHHHHHHHHHHHHC-
T ss_pred CCCCeEEEECCCCCC--hhHHHHHHHHHHhcCCCcEEEEeccCCCccchhhHH---------HHHHHHHHHHHHHhhcC-
Confidence 345779999997544 34577888999998 99999999997643221110 23566766677666653
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCC-cceEEEEeccccChh----HHhh-hcchhhhh--------------hhhhhc
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FRD-TFKAGASLYGVADLS----MLRA-ETHKFESR--------------YIDNLV 626 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~~-~~~a~v~~~~~~d~~----~~~~-~~~~~~~~--------------~~~~~~ 626 (729)
.+++.++|||+||.+++.++. +|+ +++++|+.++..... .... ........ .....+
T Consensus 102 --~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (302)
T 1pja_A 102 --PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYW 179 (302)
T ss_dssp --TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGGGSTGGGGB
T ss_pred --CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHHHhhhhhcc
Confidence 478999999999999999998 898 799999998754211 0000 00000000 000000
Q ss_pred CC---hhhhhhcC-----------------cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHH----------------
Q 004816 627 GS---EKDYYEKS-----------------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA---------------- 670 (729)
Q Consensus 627 ~~---~~~~~~~s-----------------p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~---------------- 670 (729)
.+ .+.+.... -...+.+++ |+|+++|++|.++|++.+..+.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (302)
T 1pja_A 180 HDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQLVYL 258 (302)
T ss_dssp CCTTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSSSGGGGGTCEECTTCCEECGGGSHHHH
T ss_pred cChhhhhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccchhHhhHhhhcCCcccccchhhhhhhh
Confidence 00 01110000 023466788 999999999999999877766322
Q ss_pred --------HHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 671 --------LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 671 --------l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
+...+ ++++++++++||... .+....+.+.+.+|+
T Consensus 259 ~~~~~~~~l~~~~-~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl 301 (302)
T 1pja_A 259 RDSFGLKTLLARG-AIVRCPMAGISHTAW-HSNRTLYETCIEPWL 301 (302)
T ss_dssp TTTTSHHHHHHTT-CEEEEECSSCCTTTT-TSCHHHHHHHTGGGC
T ss_pred hhhhchhhHhhcC-CeEEEEecCcccccc-ccCHHHHHHHHHHhc
Confidence 22222 489999999999754 345566666666664
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=145.81 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=119.5
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.||++||.+.+ ...|...+..|++.||.|+++|+||.|.+... .. ...+++.+.+..+++...++..
T Consensus 16 ~~~vvllHG~~~~--~~~w~~~~~~L~~~~~~vi~~Dl~GhG~S~~~---~~------~~~~~~a~~l~~~l~~l~~~~~ 84 (264)
T 1r3d_A 16 TPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPGHGTNPER---HC------DNFAEAVEMIEQTVQAHVTSEV 84 (264)
T ss_dssp BCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCTTS
T ss_pred CCcEEEEcCCCCC--HHHHHHHHHHhcccCceEEEecCCCCCCCCCC---Cc------cCHHHHHHHHHHHHHHhCcCCC
Confidence 4789999998543 35577788888768999999999987654431 10 1234454444444444333222
Q ss_pred cEEEEEcChHHHHHHH---HHh-CCCcceEEEEeccccChhHH-------------hhh-----cchhhhhhhh-hhcC-
Q 004816 572 RLCITGGSAGGYTTLA---ALA-FRDTFKAGASLYGVADLSML-------------RAE-----THKFESRYID-NLVG- 627 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~---~~~-~~~~~~a~v~~~~~~d~~~~-------------~~~-----~~~~~~~~~~-~~~~- 627 (729)
++.|+||||||.+++. ++. +|++++++|+.++....... ... .......+.. ....
T Consensus 85 p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (264)
T 1r3d_A 85 PVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQQAVFSS 164 (264)
T ss_dssp EEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTTSGGGTT
T ss_pred ceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHHHHHhhhhhhhc
Confidence 4999999999999999 776 89999999998764321100 000 0000000000 0000
Q ss_pred ----------------Chh----hhhh------cCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEE
Q 004816 628 ----------------SEK----DYYE------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 681 (729)
Q Consensus 628 ----------------~~~----~~~~------~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 681 (729)
... .+.. .+....+.++++|+|+++|++|..+ ..+.+.+. ++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~-----~~~~~~~~-----~~~~ 234 (264)
T 1r3d_A 165 LNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKF-----QQLAESSG-----LSYS 234 (264)
T ss_dssp CCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHH-----HHHHHHHC-----SEEE
T ss_pred cCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchH-----HHHHHHhC-----CcEE
Confidence 000 0000 1112235678999999999999743 12333332 4789
Q ss_pred EECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 682 EYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 682 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+++++||... .+...++.+.+.+|+.++.
T Consensus 235 ~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 263 (264)
T 1r3d_A 235 QVAQAGHNVH-HEQPQAFAKIVQAMIHSII 263 (264)
T ss_dssp EETTCCSCHH-HHCHHHHHHHHHHHHHHHC
T ss_pred EcCCCCCchh-hcCHHHHHHHHHHHHHHhc
Confidence 9999999753 3556788889999998754
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=144.90 Aligned_cols=219 Identities=11% Similarity=0.061 Sum_probs=127.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh-----hhHHHhhCCcEEEEecCCCCCCCchhHHHh
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-----SIQYWTSRGWAFVDVNYGGSTGYGREFRER 542 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-----~~~~la~~G~~v~~~d~rGs~g~g~~~~~~ 542 (729)
+|.++++..+.+.+ ...|+||++||.+.+... .|.. .+..|++ +|.|+++|+||.|.......
T Consensus 19 ~~~~l~y~~~G~~~--------~~~p~vvllHG~~~~~~~-~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~s~~~~~-- 86 (286)
T 2qmq_A 19 PYGSVTFTVYGTPK--------PKRPAIFTYHDVGLNYKS-CFQPLFRFGDMQEIIQ-NFVRVHVDAPGMEEGAPVFP-- 86 (286)
T ss_dssp TTEEEEEEEESCCC--------TTCCEEEEECCTTCCHHH-HHHHHHTSHHHHHHHT-TSCEEEEECTTTSTTCCCCC--
T ss_pred CCeEEEEEeccCCC--------CCCCeEEEeCCCCCCchh-hhhhhhhhchhHHHhc-CCCEEEecCCCCCCCCCCCC--
Confidence 78888877664421 235889999998554321 1222 5566665 69999999998643211100
Q ss_pred hccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh--------
Q 004816 543 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-------- 613 (729)
Q Consensus 543 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~-------- 613 (729)
........+++.+.+..+++. ++.+++.++|||+||.+++.++. +|++++++|+.++......+...
T Consensus 87 --~~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 162 (286)
T 2qmq_A 87 --LGYQYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGL 162 (286)
T ss_dssp --TTCCCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCHHHHHHHHHHHT
T ss_pred --CCCCccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccchhhhhhhhhccc
Confidence 011001233333333333332 13368999999999999999998 99999999999986532111000
Q ss_pred cchhhhh--------------------hhhhhcC--Ch---hhhh----hcCc----ccccCCCCCCEEEEEeCCCCCCC
Q 004816 614 THKFESR--------------------YIDNLVG--SE---KDYY----EKSP----INFVDKFSCPIILFQGLEDKVVP 660 (729)
Q Consensus 614 ~~~~~~~--------------------~~~~~~~--~~---~~~~----~~sp----~~~~~~i~~PvL~i~G~~D~~vp 660 (729)
....... +...... .. ..+. .... ...+.++++|+|+++|++|..+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~ 242 (286)
T 2qmq_A 163 TSSIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHED 242 (286)
T ss_dssp TSCHHHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEEEEEETTSTTHH
T ss_pred cccchHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEEEEecCCCcccc
Confidence 0000000 0000000 00 0010 0000 12456889999999999999886
Q ss_pred hHHHHHHHHHHHhCCC-CEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 661 PDQARKIYKALKENGL-PVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 661 ~~~~~~~~~~l~~~g~-~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
. ..+.+++... .+++++++++||.+.. +...++.+.+.+||.
T Consensus 243 -~----~~~~~~~~~~~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 243 -A----VVECNSKLDPTQTSFLKMADSGGQPQL-TQPGKLTEAFKYFLQ 285 (286)
T ss_dssp -H----HHHHHHHSCGGGEEEEEETTCTTCHHH-HCHHHHHHHHHHHHC
T ss_pred -H----HHHHHHHhcCCCceEEEeCCCCCcccc-cChHHHHHHHHHHhc
Confidence 2 2344444433 6899999999997533 446677778888874
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=146.63 Aligned_cols=193 Identities=14% Similarity=0.085 Sum_probs=121.9
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcE
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 573 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 573 (729)
.||++||.+.+ ...|...+..|+ .+|.|+++|+||.|.+... ...+.++ .++.+.+. ++ +++
T Consensus 15 ~vvllHG~~~~--~~~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~---------~~~~~~~---~~~~l~~~--l~-~~~ 76 (258)
T 1m33_A 15 HLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPGFGRSRGF---------GALSLAD---MAEAVLQQ--AP-DKA 76 (258)
T ss_dssp EEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTTSTTCCSC---------CCCCHHH---HHHHHHTT--SC-SSE
T ss_pred eEEEECCCCCC--hHHHHHHHHHhh-cCcEEEEeeCCCCCCCCCC---------CCcCHHH---HHHHHHHH--hC-CCe
Confidence 79999997543 345666777775 5899999999976654322 1122333 44555554 34 789
Q ss_pred EEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh--------------HHhhhc----chhhhhhhhh-hcC------
Q 004816 574 CITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--------------MLRAET----HKFESRYIDN-LVG------ 627 (729)
Q Consensus 574 ~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~--------------~~~~~~----~~~~~~~~~~-~~~------ 627 (729)
.|+||||||.+++.++. +|++++++|+.++..... .+.... ......+... ..+
T Consensus 77 ~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 1m33_A 77 IWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETARQ 156 (258)
T ss_dssp EEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTHHH
T ss_pred EEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCCccchh
Confidence 99999999999999998 999999999987542110 000000 0000000000 000
Q ss_pred ---------------Chh-------hhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 628 ---------------SEK-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 628 ---------------~~~-------~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
... .+...+....+.++++|+|+++|++|..+|++.++.+.+.+. .++++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~ 232 (258)
T 1m33_A 157 DARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIFAK 232 (258)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTCT----TCEEEEETT
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCCEEEEeecCCCCCCHHHHHHHHHhCc----cceEEEeCC
Confidence 000 011112223466789999999999999999877666554432 458999999
Q ss_pred CCcccCCcccHHHHHHHHHHHHHH
Q 004816 686 EQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 686 ~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+||.... +...++.+.+.+|+.+
T Consensus 233 ~gH~~~~-e~p~~~~~~i~~fl~~ 255 (258)
T 1m33_A 233 AAHAPFI-SHPAEFCHLLVALKQR 255 (258)
T ss_dssp CCSCHHH-HSHHHHHHHHHHHHTT
T ss_pred CCCCccc-cCHHHHHHHHHHHHHh
Confidence 9997533 4456778888888854
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=152.35 Aligned_cols=200 Identities=10% Similarity=0.055 Sum_probs=123.2
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|+||++||.+.......|...+..|+ +||.|+++|+||.|..... .......+++...+..+++.. +.+
T Consensus 41 ~p~vv~lHG~G~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~l~~~--~~~ 110 (292)
T 3l80_A 41 NPCFVFLSGAGFFSTADNFANIIDKLP-DSIGILTIDAPNSGYSPVS-------NQANVGLRDWVNAILMIFEHF--KFQ 110 (292)
T ss_dssp SSEEEEECCSSSCCHHHHTHHHHTTSC-TTSEEEEECCTTSTTSCCC-------CCTTCCHHHHHHHHHHHHHHS--CCS
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHHh-hcCeEEEEcCCCCCCCCCC-------CcccccHHHHHHHHHHHHHHh--CCC
Confidence 389999997433333446677777776 6999999999986654311 111234566666666555553 345
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH--------------hhhcch------hhhhhhhhhcC---
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML--------------RAETHK------FESRYIDNLVG--- 627 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~--------------~~~~~~------~~~~~~~~~~~--- 627 (729)
++.|+|||+||.+++.++. +|++++++|+.+|......+ ...... +........+.
T Consensus 111 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (292)
T 3l80_A 111 SYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQ 190 (292)
T ss_dssp EEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCCCHHHHHHCTTSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHH
T ss_pred CeEEEEEchhHHHHHHHHHhCchheeeEEEECCCCcchhhhccccccchhHHHHHHHHhccCchhhhHhhccccccCHHH
Confidence 8999999999999999988 99999999999843211100 000000 00000000000
Q ss_pred ----------ChhhhhhcCc---------------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 628 ----------SEKDYYEKSP---------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 628 ----------~~~~~~~~sp---------------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
....+....+ ...+.+ ++|+|+++|++|..++++ + ++.+.+. ..+ ++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~~P~lii~g~~D~~~~~~-~-~~~~~~~----~~~-~~ 262 (292)
T 3l80_A 191 FKQLWRGYDYCQRQLNDVQSLPDFKIRLALGEEDFKTGISE-KIPSIVFSESFREKEYLE-S-EYLNKHT----QTK-LI 262 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTCCSSCCCCGGGGCCCCCT-TSCEEEEECGGGHHHHHT-S-TTCCCCT----TCE-EE
T ss_pred HHHhHHHHHHHHHHHHhhhhccccchhhhhcchhhhhccCC-CCCEEEEEccCccccchH-H-HHhccCC----Cce-ee
Confidence 0001111111 123445 899999999999988877 4 4443322 346 89
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
++++||.+.. +...++.+.+.+|++++
T Consensus 263 ~~~~gH~~~~-e~p~~~~~~i~~fl~~~ 289 (292)
T 3l80_A 263 LCGQHHYLHW-SETNSILEKVEQLLSNH 289 (292)
T ss_dssp ECCSSSCHHH-HCHHHHHHHHHHHHHTC
T ss_pred eCCCCCcchh-hCHHHHHHHHHHHHHhc
Confidence 9999997543 45677888889998864
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-14 Score=143.90 Aligned_cols=222 Identities=15% Similarity=0.113 Sum_probs=137.9
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecC--------CCCCCCchhHHH
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY--------GGSTGYGREFRE 541 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~--------rGs~g~g~~~~~ 541 (729)
..+...++.|.+ ..++.|+||-+||+.. ...+||+|+.+++ +|+.|+|.-+..
T Consensus 90 ~~~~~~i~lP~~------~~~p~Pvii~i~~~~~-------------~~~~G~a~~~~~~~~v~~~~~~gs~g~g~f~~l 150 (375)
T 3pic_A 90 ISFTVTITYPSS------GTAPYPAIIGYGGGSL-------------PAPAGVAMINFNNDNIAAQVNTGSRGQGKFYDL 150 (375)
T ss_dssp EEEEEEEECCSS------SCSSEEEEEEETTCSS-------------CCCTTCEEEEECHHHHSCCSSGGGTTCSHHHHH
T ss_pred eEEEEEEECCCC------CCCCccEEEEECCCcc-------------ccCCCeEEEEecccccccccCCCCccceecccc
Confidence 357888999976 2456799999998511 1468999999987 667778874321
Q ss_pred h-hccCCCccc--HHHHHHHHHHHHhCC--CCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhh----
Q 004816 542 R-LLGRWGIVD--VNDCCSCATFLVGSG--KADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRA---- 612 (729)
Q Consensus 542 ~-~~~~~~~~~--~~D~~~~~~~l~~~~--~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~---- 612 (729)
. ....||... ..|+.++++||..++ .+|++||+++|||+||..|+++++..++|+++|+.++..+-.....
T Consensus 151 y~~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D~Ri~~~v~~~~g~~G~~~~R~~~~ 230 (375)
T 3pic_A 151 YGSSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFEKRIVLTLPQESGAGGSACWRISDY 230 (375)
T ss_dssp HCTTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHCTTEEEEEEESCCTTTTSCHHHHHH
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcCCceEEEEeccCCCCchhhhhhhhh
Confidence 1 123466554 359999999999998 8999999999999999999999997779999999886433211110
Q ss_pred ------hcchhhhhhhhhhc--CChhhhh---hcCcccc---cCCC-CCCEEEEEeCCCCCCChHHHHHHHHHH----Hh
Q 004816 613 ------ETHKFESRYIDNLV--GSEKDYY---EKSPINF---VDKF-SCPIILFQGLEDKVVPPDQARKIYKAL----KE 673 (729)
Q Consensus 613 ------~~~~~~~~~~~~~~--~~~~~~~---~~sp~~~---~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l----~~ 673 (729)
.............+ .+...|. ..-|+.+ +.-| ..|+|++.| +|..++++.....+.++ +.
T Consensus 231 ~~~~Ge~v~~~~~~~~e~~Wf~~~~~~y~~~~~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~~~g~~~~~~~a~~VY~~ 309 (375)
T 3pic_A 231 LKSQGANIQTASEIIGEDPWFSTTFNSYVNQVPVLPFDHHSLAALIAPRGLFVIDN-NIDWLGPQSCFGCMTAAHMAWQA 309 (375)
T ss_dssp HHHTTCCCCCHHHHTTTCSCSCGGGGGTTTCGGGSSCCHHHHHHTSTTSEEEEECC-CCGGGCHHHHHHHHHHHHHHHHH
T ss_pred hcccCccccccccccCcccccccchhhhcccccccCcCHHHHHHHhCCceEEEecC-CCcccCcHHHHHHHHHHHHHHHH
Confidence 00000000000000 0011111 0112111 2222 368999999 99888887554333333 44
Q ss_pred CCC--CEEEEEECCCCcc-cCCcccHHHHHHHHHHHHHHHhCCCCC
Q 004816 674 NGL--PVALVEYEGEQHG-FRKAENIKFTLEQQMVFFARVVGHFDV 716 (729)
Q Consensus 674 ~g~--~~~~~~~~~~gH~-~~~~~~~~~~~~~~~~fl~~~l~~~~~ 716 (729)
.|. .+.+....+.+|. |.. +..+.+.+||+++|++...
T Consensus 310 lG~~d~~~~~~~ggH~Hc~fp~-----~~~~~~~~F~~k~L~~~~~ 350 (375)
T 3pic_A 310 LGVSDHMGYSQIGAHAHCAFPS-----NQQSQLTAFVQKFLLGQST 350 (375)
T ss_dssp TTCGGGEEEECCSCCSTTCCCG-----GGHHHHHHHHHHHTSCCCC
T ss_pred cCCccceEEEeeCCCccccCCH-----HHHHHHHHHHHHHhCCCCC
Confidence 454 5666543334552 322 2336678999999986543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-13 Score=156.26 Aligned_cols=263 Identities=9% Similarity=-0.018 Sum_probs=167.6
Q ss_pred EEEECCEEEEEECCCC----cEEEEeCCCCCCCCeecCCCC---CCCceeeecceecCCCCEEEEEEeccCCCCCCcceE
Q 004816 150 FRIFGDTVIFSNYKDQ----RLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~----~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~ 222 (729)
....++.++|.....+ .+|+.+.++ ..+.|.+.+ ......+..++|||||++|+|+.+..+.+ ...
T Consensus 84 p~~~g~~~y~~~~~~~~~~~~~~r~~~~~---~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~----~~~ 156 (693)
T 3iuj_A 84 PFREGRYHYFFKNDGLQNQNVLWRQQEGK---PAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSD----WRE 156 (693)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEECTTS---CCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCC----EEE
T ss_pred CEEECCEEEEEEEcCCCceeEEEEeCCCC---CcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCc----eEE
Confidence 3456777766654332 466655443 334333221 11124567889999999999998765433 478
Q ss_pred EEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCC-----CCCCcEEEEEEecCCCCeeeeEEecCCC-CCc
Q 004816 223 IVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM-----PWDKAELWVGYISENGDVYKRVCVAGFD-PTI 296 (729)
Q Consensus 223 l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~-----~~~~~~l~~~d~~~~g~~~~~~~~~~~~-~~~ 296 (729)
|+++|+++|+....+-......+++|| ||+.|+|++.+.... .+...+||++++. ++......+....+ ..
T Consensus 157 i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg-t~~~~~~~v~~~~~~~~- 233 (693)
T 3iuj_A 157 IHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG-TAQEDDRLVFGAIPAQH- 233 (693)
T ss_dssp EEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT-SCGGGCEEEESCSGGGC-
T ss_pred EEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC-CCcccceEEEecCCCCC-
Confidence 999999999876654322224678999 999999999664300 0234679999987 55433333443321 01
Q ss_pred cccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCC--eEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEE
Q 004816 297 VESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 373 (729)
Q Consensus 297 ~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g--~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~ 373 (729)
.....+.|||||+ |++.+........||++|++++ +.+.|+........+ |.+ +++.||+.++
T Consensus 234 -~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~------------~g~~l~~~t~ 299 (693)
T 3iuj_A 234 -HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDN------------KGSTLYLLTN 299 (693)
T ss_dssp -CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEE------------ETTEEEEEEC
T ss_pred -eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Eec------------cCCEEEEEEC
Confidence 2345688999999 7777765223358999998776 567776433111111 332 7788998887
Q ss_pred ECC-eEEEEEEECCCCce---EeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 374 QNG-RSYLGILDDFGHSL---SLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 374 ~~g-~~~ly~~d~~~g~~---~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
+++ ..+|+.++++++.. +.|+.....+..++.+++.+++... .+....|++++++++..+.|+
T Consensus 300 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~-~~g~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 300 RDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYM-VDATARVEQFDYEGKRVREVA 366 (693)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEE-ETTEEEEEEECTTSCEEEEEC
T ss_pred CCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEE-ECCeeEEEEEECCCCeeEEee
Confidence 665 57899999988764 6666544333366777777766554 344557999999887665554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.55 E-value=8e-13 Score=141.30 Aligned_cols=239 Identities=11% Similarity=0.022 Sum_probs=153.8
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
|++++..+++....++.|+++|+.+ ++....... ......++|+|||++|++..... ..|+++|+.
T Consensus 39 ~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~~--------~~v~v~d~~ 104 (391)
T 1l0q_A 39 ISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPA----GSSPQGVAVSPDGKQVYVTNMAS--------STLSVIDTT 104 (391)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEEC----SSSEEEEEECTTSSEEEEEETTT--------TEEEEEETT
T ss_pred ECCCCCEEEEECCCCCeEEEEECCC--CeEEEEEEC----CCCccceEECCCCCEEEEEECCC--------CEEEEEECC
Confidence 3334556767776778999999987 554433322 12567888999999987775432 579999999
Q ss_pred CCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 230 GQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 230 ~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
+++..............+|+|||++|++.... ...|+++|+. +++. ...+... .....+.|+|||
T Consensus 105 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------~~~v~~~d~~-~~~~--~~~~~~~-----~~~~~~~~~~dg 169 (391)
T 1l0q_A 105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG-------DKTVSVINTV-TKAV--INTVSVG-----RSPKGIAVTPDG 169 (391)
T ss_dssp TTEEEEEEECSSSEEEEEECTTSSEEEEEETT-------TTEEEEEETT-TTEE--EEEEECC-----SSEEEEEECTTS
T ss_pred CCeEEEEEeCCCCcceEEECCCCCEEEEEeCC-------CCEEEEEECC-CCcE--EEEEecC-----CCcceEEECCCC
Confidence 98877666655566788999999999877632 3469999998 6664 3333332 234678899999
Q ss_pred cEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 310 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 310 ~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
+.++.+.. ....|+++|+.+++............ .+.|.+ +++.++..........|+++|+.+++
T Consensus 170 ~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~---------~~~~~~---~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 170 TKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPS---------GIAVNP---EGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp SEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEE---------EEEECT---TSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred CEEEEEeC--CCCEEEEEECCCCeEEEEEecCCCcc---------ceEECC---CCCEEEEEecCcCCCcEEEEECCCCe
Confidence 94433333 23468888998887665553322222 233433 67777777653345577888988876
Q ss_pred eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 390 LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 390 ~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
..........+..+ ..+++..++.+.+.+ ..++++|+.+++.
T Consensus 236 ~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d--~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 236 ITARIPVGPDPAGIAVTPDGKKVYVALSFX--NTVSVIDTATNTI 278 (391)
T ss_dssp EEEEEECCSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEE
T ss_pred EEEEEecCCCccEEEEccCCCEEEEEcCCC--CEEEEEECCCCcE
Confidence 54333333345555 334444444443332 5788899888764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-12 Score=137.72 Aligned_cols=272 Identities=10% Similarity=0.022 Sum_probs=157.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
..+..+.|+| |+.+|......+..++..+|..+.+ +|+.+.+.... ........++++++.+++....++.+
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~-~g~~~~~~~~~------~~~~~p~~~~~dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE-KGTLHLLNTQK------TMGADPCYLTTNGKNIVTANYSGGSI 122 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT-TTEEEEEEEEE------CSSSCEEEEEECSSEEEEEETTTTEE
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC-CCcEEEeeEec------cCCCCcEEEEECCCEEEEEECCCCEE
Confidence 4677889999 8888887754334577777887665 22333332110 00111233445555677666667789
Q ss_pred EEEeCCCCCCCCeecCC----CC-C-----CCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC--CC----
Q 004816 168 YKHSIDSKDSSPLPITP----DY-G-----EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN--GQ---- 231 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~----~~-~-----~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~--~g---- 231 (729)
.+++++.. +....+.. .. + ........++|||||++|++..... ..|++++++ ++
T Consensus 123 ~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--------~~v~v~~~~~~~~~~~~ 193 (361)
T 3scy_A 123 TVFPIGQD-GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT--------DQIHKFNINPNANADNK 193 (361)
T ss_dssp EEEEBCTT-SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT--------TEEEEEEECTTCCTTTC
T ss_pred EEEEeCCC-CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC--------CEEEEEEEcCCCCcccc
Confidence 99998642 33322211 00 0 0011224578999999877664322 345555554 33
Q ss_pred c-eE------Ee-eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 232 N-IQ------VL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 232 ~-~~------~l-t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
+ .. .+ .........++|||||++|++... . ...|.+++++ +|+............. ......+
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~------~~~v~v~~~~-~g~~~~~~~~~~~~~~-~~~~~~i 264 (361)
T 3scy_A 194 EKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE-I------GGTVIAFRYA-DGMLDEIQTVAADTVN-AQGSGDI 264 (361)
T ss_dssp CCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-T------TCEEEEEEEE-TTEEEEEEEEESCSSC-CCCEEEE
T ss_pred cceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC-C------CCeEEEEEec-CCceEEeEEEecCCCC-CCCcccE
Confidence 2 21 11 222233456899999998877652 1 3458999998 6765444333222100 0233578
Q ss_pred eeCCCCcEEEEEecC-CCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEE
Q 004816 304 KWSSKGELFFVTDRK-NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 382 (729)
Q Consensus 304 ~wspDG~l~~~~~~~-~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~ 382 (729)
+|+|||+.+|+++.. .+...+|.++..+++.+.+..... .. ....+.|.+ +++.|++....++...+|.
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~-----~~~~~~~sp---dg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GI-----HPRNFIITP---NGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SS-----CCCEEEECT---TSCEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CC-----CCceEEECC---CCCEEEEEECCCCCEEEEE
Confidence 899999955566652 345566666666777665542221 00 112344543 7777777766778889999
Q ss_pred EECCCCceEeecc
Q 004816 383 LDDFGHSLSLLDI 395 (729)
Q Consensus 383 ~d~~~g~~~~lt~ 395 (729)
+|.++|+++.+..
T Consensus 335 ~d~~~g~~~~~~~ 347 (361)
T 3scy_A 335 RDQATGLLTDIKK 347 (361)
T ss_dssp ECTTTCCEEECSC
T ss_pred EECCCCcEeecce
Confidence 9999999877753
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-13 Score=140.41 Aligned_cols=216 Identities=13% Similarity=0.054 Sum_probs=132.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|..+++....+ ++.|.||++||.+.+. ..|...+..|++. |.|+++|+||.|.+... . .
T Consensus 29 ~g~~l~y~~~G~----------g~~~~vvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~GhG~S~~~----~---~ 88 (318)
T 2psd_A 29 LDSFINYYDSEK----------HAENAVIFLHGNATSS--YLWRHVVPHIEPV-ARCIIPDLIGMGKSGKS----G---N 88 (318)
T ss_dssp TTEEEEEEECCS----------CTTSEEEEECCTTCCG--GGGTTTGGGTTTT-SEEEEECCTTSTTCCCC----T---T
T ss_pred CCeEEEEEEcCC----------CCCCeEEEECCCCCcH--HHHHHHHHHhhhc-CeEEEEeCCCCCCCCCC----C---C
Confidence 788887544321 1236899999985443 4566667777655 79999999987654322 0 1
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh----h------HHhhhc--
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----S------MLRAET-- 614 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~----~------~~~~~~-- 614 (729)
+....+++.+.+..+++.-.+ .+++.|+||||||.+++.++. +|++++++|+.++.... . ......
T Consensus 89 ~~~~~~~~a~dl~~ll~~l~~-~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (318)
T 2psd_A 89 GSYRLLDHYKYLTAWFELLNL-PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDEWPDIEEDIALIKS 167 (318)
T ss_dssp SCCSHHHHHHHHHHHHTTSCC-CSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEECCSCBSCCTTSCSCHHHHHHHHS
T ss_pred CccCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccccCCccchhhhhhHHHHHHHHhc
Confidence 113356666666666665322 278999999999999999998 99999999997643110 0 000000
Q ss_pred ----------chhhhhhhhhhc-C--Chh---h-----------------hhhcCc----------------ccccCCC-
Q 004816 615 ----------HKFESRYIDNLV-G--SEK---D-----------------YYEKSP----------------INFVDKF- 644 (729)
Q Consensus 615 ----------~~~~~~~~~~~~-~--~~~---~-----------------~~~~sp----------------~~~~~~i- 644 (729)
..+...+..... . ..+ . +....+ ...+.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 247 (318)
T 2psd_A 168 EEGEKMVLENNFFVETVLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASD 247 (318)
T ss_dssp THHHHHHTTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHTCCBTTTSCHHHHHHHHHHHHHHHTCT
T ss_pred ccchhhhhcchHHHHhhccccccccCCHHHHHHHHHhhcCccccccchhcccccccccccccchhHHHHHHHHHHhcccc
Confidence 000000000000 0 000 0 000000 0123467
Q ss_pred CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 645 ~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
++|+|+++|++| .+++ .+.++.+.+. ..+++++ ++||... .+...++.+.+.+|+.+...
T Consensus 248 ~~P~Lvi~G~~D-~~~~-~~~~~~~~~~----~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 307 (318)
T 2psd_A 248 DLPKLFIESDPG-FFSN-AIVEGAKKFP----NTEFVKV-KGLHFLQ-EDAPDEMGKYIKSFVERVLK 307 (318)
T ss_dssp TSCEEEEEEEEC-SSHH-HHHHHHTTSS----SEEEEEE-EESSSGG-GTCHHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeccc-cCcH-HHHHHHHhCC----CcEEEEe-cCCCCCH-hhCHHHHHHHHHHHHHHhhc
Confidence 999999999999 8877 6665554442 4678888 6799653 46678899999999988765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=134.60 Aligned_cols=241 Identities=11% Similarity=0.061 Sum_probs=142.9
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCC--eecCCCCCCCceeeec-ceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP--LPITPDYGEPLVSYAD-GIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~--~~lt~~~~~~~~~~~~-~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.|+++++.+++....++.|+++|+.+ ++. +.+... ..... ++|||||++|+ +...... ...|++
T Consensus 46 ~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~-~~~~~~~-----~~~i~v 112 (331)
T 3u4y_A 46 AITSDCSNVVVTSDFCQTLVQIETQL--EPPKVVAIQEG-----QSSMADVDITPDDQFAV-TVTGLNH-----PFNMQS 112 (331)
T ss_dssp EECSSSCEEEEEESTTCEEEEEECSS--SSCEEEEEEEC-----SSCCCCEEECTTSSEEE-ECCCSSS-----SCEEEE
T ss_pred EEcCCCCEEEEEeCCCCeEEEEECCC--CceeEEecccC-----CCCccceEECCCCCEEE-EecCCCC-----cccEEE
Confidence 34445556777777678999999987 553 333332 12244 88999999987 4332211 137999
Q ss_pred EEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeee--EEecCCCCCccccccCc
Q 004816 226 IALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--VCVAGFDPTIVESPTEP 303 (729)
Q Consensus 226 ~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~--~~~~~~~~~~~~~~~~~ 303 (729)
+|+++++.............++|||||++|++..... ...|++++++.+|..... ..+.. . .....+
T Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~-~----~~~~~~ 181 (331)
T 3u4y_A 113 YSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQEFISG-G----TRPFNI 181 (331)
T ss_dssp EETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEEEEECS-S----SSEEEE
T ss_pred EECCCCCeEEEEECCCCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCCccccC-C----CCccce
Confidence 9999988766555444457889999999988776432 233777887744543222 12221 1 344678
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEEcCCCeE---EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
.|+|||+.+|++.. +...|.++|+++++. ........... .+.|.+ +++.+|+... +...|
T Consensus 182 ~~spdg~~l~v~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~---------~~~~sp---dg~~l~v~~~--~~~~i 245 (331)
T 3u4y_A 182 TFTPDGNFAFVANL--IGNSIGILETQNPENITLLNAVGTNNLPG---------TIVVSR---DGSTVYVLTE--STVDV 245 (331)
T ss_dssp EECTTSSEEEEEET--TTTEEEEEECSSTTSCEEEEEEECSSCCC---------CEEECT---TSSEEEEECS--SEEEE
T ss_pred EECCCCCEEEEEeC--CCCeEEEEECCCCcccceeeeccCCCCCc---------eEEECC---CCCEEEEEEc--CCCEE
Confidence 99999994444443 234688888888765 32222221222 334443 7776766543 45568
Q ss_pred EEEECCCCceEeecc---C----Ccce---E--EeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 381 GILDDFGHSLSLLDI---P----FTDI---D--NITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 381 y~~d~~~g~~~~lt~---~----~~~v---~--~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+++|+++++.+.+.. . .... . .++++++.+ ++++.. ...+.++++++..
T Consensus 246 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l-~v~~~~--~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 246 FNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL-FISANI--SRELKVFTISGKV 306 (331)
T ss_dssp EEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE-EEEETT--TTEEEEEETTSCE
T ss_pred EEEECCCCceeeecccccccccCCCCcccccceEECCCCCEE-EEecCC--CCcEEEEEecCCc
Confidence 899999888744321 1 1111 1 224455544 444432 2467777876654
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-15 Score=162.71 Aligned_cols=215 Identities=18% Similarity=0.217 Sum_probs=139.1
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cchhhhHHHhhCC-cEEEEecCC-CCCCCchhHHHhhccC
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRG-WAFVDVNYG-GSTGYGREFRERLLGR 546 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~la~~G-~~v~~~d~r-Gs~g~g~~~~~~~~~~ 546 (729)
..+...+|.|... .++.|+||++|||++..... .+....+.|+++| ++|+.+||| |..|++..-... ...
T Consensus 81 dcL~l~v~~P~~~------~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~ 153 (489)
T 1qe3_A 81 DCLYVNVFAPDTP------SQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAY 153 (489)
T ss_dssp CCCEEEEEEECSS------CCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTS
T ss_pred CCCEEEEEeCCCC------CCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCcccccc-ccC
Confidence 3455567778651 23489999999987533222 2223456777775 999999999 333443211000 011
Q ss_pred CCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEEeccccChhHHhhhcchhhhh
Q 004816 547 WGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVADLSMLRAETHKFESR 620 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---~~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 620 (729)
.+.....|+.++++|+.++ ...|++||+|+|+|+||++++.++.. +++|+++|+.+|..++...... ......
T Consensus 154 ~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~-~~~~~~ 232 (489)
T 1qe3_A 154 SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQA-ASTAAA 232 (489)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHH-HHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHH-HHHHHH
Confidence 2233478999999999875 34689999999999999999888873 5789999999997743322111 011111
Q ss_pred hhhh----------hcC-C-hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 621 YIDN----------LVG-S-EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 621 ~~~~----------~~~-~-~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
+... +.. . .+.+...+++.+......|.+++++..|..+.+++..++++..+.+++++.+-..++|+|
T Consensus 233 ~~~~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~vp~~~g~~~~Eg~ 312 (489)
T 1qe3_A 233 FLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRDEGY 312 (489)
T ss_dssp HHHHHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTCCEEEEEETTGGG
T ss_pred HHHHcCCCHHHHHHHHcCCHHHHHHHHHHhhhccccccCCccceEeECCeecCcCHHHHHhcCCCCCCCEEEeeecchhH
Confidence 1111 000 0 112222222222223345678889999999999999999888888899999999999999
Q ss_pred ccCC
Q 004816 689 GFRK 692 (729)
Q Consensus 689 ~~~~ 692 (729)
.|..
T Consensus 313 ~~~~ 316 (489)
T 1qe3_A 313 LFFT 316 (489)
T ss_dssp GTCC
T ss_pred hhcc
Confidence 8754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.8e-13 Score=138.63 Aligned_cols=257 Identities=11% Similarity=0.122 Sum_probs=143.7
Q ss_pred EEEECCEEEEEECC--CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 150 FRIFGDTVIFSNYK--DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 150 ~~~~~~~i~~~~~~--~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
|++++ ++++.... ++.|+++++++ ++.+++..... .......++|||||++|++..... ..+.+++
T Consensus 47 ~spdg-~l~~~~~~~~~~~v~~~~~~~--g~~~~~~~~~~-~~~~p~~~a~spdg~~l~~~~~~~--------~~v~v~~ 114 (347)
T 3hfq_A 47 LSAKD-CLYSVDKEDDEGGIAAWQIDG--QTAHKLNTVVA-PGTPPAYVAVDEARQLVYSANYHK--------GTAEVMK 114 (347)
T ss_dssp ECTTC-EEEEEEEETTEEEEEEEEEET--TEEEEEEEEEE-ESCCCSEEEEETTTTEEEEEETTT--------TEEEEEE
T ss_pred EccCC-eEEEEEecCCCceEEEEEecC--CcEEEeeeeec-CCCCCEEEEECCCCCEEEEEeCCC--------CEEEEEE
Confidence 34433 45555542 46899999976 66555543100 012346678999999877665322 3567777
Q ss_pred cC-CCceEEeee----CC--------CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCC
Q 004816 228 LN-GQNIQVLVS----GS--------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 294 (729)
Q Consensus 228 l~-~g~~~~lt~----~~--------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~ 294 (729)
++ +|..+.+.. +. ......+|||||+ |++... ....|++++++.+|++..........
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~-------~~~~v~~~~~~~~g~~~~~~~~~~~~- 185 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL-------GSDKVYVYNVSDAGQLSEQSVLTMEA- 185 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET-------TTTEEEEEEECTTSCEEEEEEEECCT-
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC-------CCCEEEEEEECCCCcEEEeeeEEcCC-
Confidence 74 455544432 11 1234579999999 665542 23468899987446553332222211
Q ss_pred CccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeec---cCccccCCcccccCcceeeeeecCCCCEEEE
Q 004816 295 TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIAC 370 (729)
Q Consensus 295 ~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~ 370 (729)
. .....++|+|||+ +++.... .+...+|.++..+++.+.+.. ......... ....+.|.+ +++.||+
T Consensus 186 g--~~p~~~~~spdg~~l~v~~~~-~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~i~~sp---dG~~l~v 256 (347)
T 3hfq_A 186 G--FGPRHLVFSPDGQYAFLAGEL-SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN---GAAAIRLSH---DGHFLYV 256 (347)
T ss_dssp T--CCEEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC---EEEEEEECT---TSCEEEE
T ss_pred C--CCCceEEECCCCCEEEEEeCC-CCEEEEEEecCCCCceEEeeeeeecCCCCCCCC---cceeEEECC---CCCEEEE
Confidence 1 2345679999999 5554444 555566666665677554431 111100000 122345554 7777877
Q ss_pred EEEECCeEEEEEEECCCCceEee---ccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 371 SYRQNGRSYLGILDDFGHSLSLL---DIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 371 ~s~~~g~~~ly~~d~~~g~~~~l---t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
+...++...+|.++. ++..+.+ .........+ ..++++.++.+........+|.+|.++|+++++.
T Consensus 257 ~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 257 SNRGYNTLAVFAVTA-DGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp EEETTTEEEEEEECG-GGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EeCCCCEEEEEEECC-CCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence 776677777776653 3344433 2222234444 3444555566655555556788788888876654
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=140.23 Aligned_cols=221 Identities=15% Similarity=0.069 Sum_probs=136.8
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecC--------CCCCCCchhHHHh
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY--------GGSTGYGREFRER 542 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~--------rGs~g~g~~~~~~ 542 (729)
.+.+.++.|.+ .++.|+||.+||+.. ...+||+++.+|+ +|+.|+|. |...
T Consensus 124 sf~~~i~lP~g-------~~P~Pvii~~~~~~~-------------~~~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~l 182 (433)
T 4g4g_A 124 SFSASIRKPSG-------AGPFPAIIGIGGASI-------------PIPSNVATITFNNDEFGAQMGSGSRGQGK-FYDL 182 (433)
T ss_dssp EEEEEEECCSS-------SCCEEEEEEESCCCS-------------CCCTTSEEEEECHHHHSCCSSGGGTTCSH-HHHH
T ss_pred EEEEEEECCCC-------CCCccEEEEECCCcc-------------ccCCCeEEEEeCCcccccccCCCcCCccc-cccc
Confidence 36889999966 466899999987511 1567999999987 55677787 3322
Q ss_pred h--ccCCCccc--HHHHHHHHHHHHh----CCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhh--
Q 004816 543 L--LGRWGIVD--VNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRA-- 612 (729)
Q Consensus 543 ~--~~~~~~~~--~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~-- 612 (729)
. ...|+... ..++..++|||.. +..+|++||+++|||+||..|+++++..++|+++|+.++..+-.....
T Consensus 183 y~~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D~Ri~~vi~~~sg~~G~~~~R~~ 262 (433)
T 4g4g_A 183 FGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALVDRIALTIPQESGAGGAACWRIS 262 (433)
T ss_dssp HCTTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHCTTCSEEEEESCCTTTTSCHHHH
T ss_pred cCCccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcCCceEEEEEecCCCCchhhhhhc
Confidence 2 23465543 3599999999999 789999999999999999999999997779999999986543211110
Q ss_pred --------hcchhhhhhhhhhc--CChhhhh---hcCcccc---cCC-CCCCEEEEEeCCCCCCChHHHHHHHHHH----
Q 004816 613 --------ETHKFESRYIDNLV--GSEKDYY---EKSPINF---VDK-FSCPIILFQGLEDKVVPPDQARKIYKAL---- 671 (729)
Q Consensus 613 --------~~~~~~~~~~~~~~--~~~~~~~---~~sp~~~---~~~-i~~PvL~i~G~~D~~vp~~~~~~~~~~l---- 671 (729)
.............+ .+...|. ..-|+.+ +.- ...|+|++.| +|..++++.....+.++
T Consensus 263 ~~~~~~Ge~v~~~~~~~ge~~Wf~~~f~~y~~~~~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~p~g~~~a~~aa~~VY 341 (433)
T 4g4g_A 263 DQQKAAGANIQTAAQIITENPWFSRNFDPHVNSITSVPQDHHLLAALIVPRGLAVFEN-NIDWLGPVSTTGCMAAGRLIY 341 (433)
T ss_dssp HHHHHTTCCCCCHHHHTTTCCCSCTTTGGGTTCGGGSSCCGGGHHHHHTTSEEEEEEC-CCTTTCHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhhhcccCCccccchhhHhhccccccCCcCHHHHHHhhCCceEEEecC-CCCcCCcHHHHHHHHHHHHHH
Confidence 00000000000000 0111111 0112111 111 1368999999 88888886554333332
Q ss_pred HhCC--CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCCCCCC
Q 004816 672 KENG--LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVA 717 (729)
Q Consensus 672 ~~~g--~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 717 (729)
+..| ..+.+...++.+|... ++ +..+.+.+||+++|++....
T Consensus 342 ~~lGa~d~l~~~~~ggH~Hc~f-p~---~~r~~~~~F~~k~Lkg~~~~ 385 (433)
T 4g4g_A 342 KAYGVPNNMGFSLVGGHNHCQF-PS---SQNQDLNSYINYFLLGQGSP 385 (433)
T ss_dssp HHHTCGGGEEEEECCSSCTTCC-CG---GGHHHHHHHHHHHTTCCSCC
T ss_pred HHcCCccceEEEeeCCCCcccC-CH---HHHHHHHHHHHHHhCCCCCC
Confidence 2233 3567766555566421 22 22356778999999866443
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=147.46 Aligned_cols=224 Identities=14% Similarity=0.061 Sum_probs=140.9
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh------CCcEEEEecCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS------RGWAFVDVNYG 530 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~------~G~~v~~~d~r 530 (729)
+.+.+++.+...|....++++.|++. .. +.+++|+|+++||.... .......+.+.. .++.||.+++.
T Consensus 11 ~v~~~~~~S~~l~~~r~~~VylP~~y--~~-~~~~yPVlylldG~~~f---~~~~~~~~~l~~~~~~~~~~~IvV~i~~~ 84 (331)
T 3gff_A 11 EYQSKRLESRLLKETREYVIALPEGY--AQ-SLEAYPVVYLLDGEDQF---DHMASLLQFLSQGTMPQIPKVIIVGIHNT 84 (331)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCTTG--GG-SCCCEEEEEESSHHHHH---HHHHHHHHHHTCSSSCSSCCCEEEEECCS
T ss_pred eEEEEEEEecCCCCeEEEEEEeCCCC--CC-CCCCccEEEEecChhhh---HHHHHHHHHHHhhhhcCCCCEEEEEECCC
Confidence 45677787765688999999999883 32 15789999999995110 011123344443 36888988762
Q ss_pred CCCCCchhHHHhh-------------cc-CCCcccHHHHH--HHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC
Q 004816 531 GSTGYGREFRERL-------------LG-RWGIVDVNDCC--SCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD 593 (729)
Q Consensus 531 Gs~g~g~~~~~~~-------------~~-~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~ 593 (729)
.+.+++.... .. ..+.....+.. .++.++.++..+++.| +|+||||||++++.++. +|+
T Consensus 85 ---~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~ 160 (331)
T 3gff_A 85 ---NRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRP 160 (331)
T ss_dssp ---SHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCS
T ss_pred ---CcccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCch
Confidence 1111111000 00 01111222322 4556666666666555 79999999999999997 999
Q ss_pred cceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCC-------CCChHHHHH
Q 004816 594 TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK-------VVPPDQARK 666 (729)
Q Consensus 594 ~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~-------~vp~~~~~~ 666 (729)
.|+++++.+|...+.... + .... .... ........|+++.+|+.|. .++...+.+
T Consensus 161 ~F~~~~~~S~~~w~~~~~-----~----~~~~---~~~~------~~~~~~~~~l~l~~G~~d~~~~~~~~~~~~~~~~~ 222 (331)
T 3gff_A 161 LFSAYLALDTSLWFDSPH-----Y----LTLL---EERV------VKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNLA 222 (331)
T ss_dssp SCSEEEEESCCTTTTTTH-----H----HHHH---HHHH------HHCCCSSEEEEEEECCCSEETTTEECCHHHHHHHH
T ss_pred hhheeeEeCchhcCChHH-----H----HHHH---HHHh------hcccCCCCeEEEEeCCCCCCCccchHHHHHHHHHH
Confidence 999999999976432100 0 0000 0000 1111235799999999998 567788899
Q ss_pred HHHHHHhC---CCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 667 IYKALKEN---GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 667 ~~~~l~~~---g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+++.|+.. |+++++.+||+++|+... ...+...++|+-....
T Consensus 223 l~~~Lk~~~~~g~~~~~~~~pg~~H~sv~----~~~~~~~l~~lf~~~~ 267 (331)
T 3gff_A 223 FADKLTKLAPKGLGFMAKYYPEETHQSVS----HIGLYDGIRHLFKDFA 267 (331)
T ss_dssp HHHHHHHHCCTTEEEEEEECTTCCTTTHH----HHHHHHHHHHHHGGGC
T ss_pred HHHHHHhccCCCceEEEEECCCCCccccH----HHHHHHHHHHHHhhcC
Confidence 99999986 678999999999997432 3444555566655544
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.8e-12 Score=136.02 Aligned_cols=293 Identities=7% Similarity=-0.049 Sum_probs=174.6
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEE-CCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-GDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~l 167 (729)
..+.++.|+|++.+++... .++...+|.... ++....++.. .. .-+........++ ++.++++...++.|
T Consensus 123 ~~~~~~~~s~~~~~~~~~~---~~~~i~~~d~~~---g~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~s~~~d~~v 193 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLL---EDEGMDVLDINS---GQTVRLSPPE-KY--KKKLGFVETISIPEHNELWVSQMQANAV 193 (433)
T ss_dssp SCBCCCEESSSSEEEEEBT---TSSSEEEEETTT---CCEEEECCCH-HH--HTTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred CCceEEEEeCCCeEEEEeC---CCCeEEEEECCC---CeEeeecCcc-cc--cccCCceeEEEEcCCCEEEEEECCCCEE
Confidence 3456889998666776654 345555665432 2333332211 00 0011112233443 44677777778899
Q ss_pred EEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeee
Q 004816 168 YKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFP 246 (729)
Q Consensus 168 ~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~ 246 (729)
++||+++ ++. ..+... ......++|+|||+.++++.... ..|+++|+.+++..............
T Consensus 194 ~~~d~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~--------~~i~~~d~~~~~~~~~~~~~~~~~~~ 259 (433)
T 3bws_A 194 HVFDLKT--LAYKATVDLT----GKWSKILLYDPIRDLVYCSNWIS--------EDISVIDRKTKLEIRKTDKIGLPRGL 259 (433)
T ss_dssp EEEETTT--CCEEEEEECS----SSSEEEEEEETTTTEEEEEETTT--------TEEEEEETTTTEEEEECCCCSEEEEE
T ss_pred EEEECCC--ceEEEEEcCC----CCCeeEEEEcCCCCEEEEEecCC--------CcEEEEECCCCcEEEEecCCCCceEE
Confidence 9999987 543 333322 23457788999999876665332 47999999988776655555567788
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH 325 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~ 325 (729)
+|+|||++|+...............|+++|+. +++... ... .. .....+.|+|||+ +++.... . ..|.
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~--~~~-~~----~~~~~~~~~~~g~~l~~~~~~-~--~~v~ 328 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLID--TIG-PP----GNKRHIVSGNTENKIYVSDMC-C--SKIE 328 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEE--EEE-EE----ECEEEEEECSSTTEEEEEETT-T--TEEE
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEEe--ecc-CC----CCcceEEECCCCCEEEEEecC-C--CEEE
Confidence 99999999988775433221124679999998 665422 221 11 2345689999998 6555443 3 4678
Q ss_pred EEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe------------EEEEEEECCCCceEee
Q 004816 326 KWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR------------SYLGILDDFGHSLSLL 393 (729)
Q Consensus 326 ~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~------------~~ly~~d~~~g~~~~l 393 (729)
++|+++++............. +.|.+ +++.+++.....+. ..|+++|+.+++....
T Consensus 329 v~d~~~~~~~~~~~~~~~~~~---------~~~s~---dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 329 VYDLKEKKVQKSIPVFDKPNT---------IALSP---DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp EEETTTTEEEEEEECSSSEEE---------EEECT---TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred EEECCCCcEEEEecCCCCCCe---------EEEcC---CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE
Confidence 889888876655433222222 33432 66667766654332 3788899988876655
Q ss_pred ccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 394 DIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 394 t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
......+..+ ..+++..++.++..+ ..+++++++
T Consensus 397 ~~~~~~~~~~~~s~dg~~l~~~~~~d--~~i~v~~~~ 431 (433)
T 3bws_A 397 WEAGNQPTGLDVSPDNRYLVISDFLD--HQIRVYRRD 431 (433)
T ss_dssp EECSSSEEEEEECTTSCEEEEEETTT--TEEEEEEET
T ss_pred ecCCCCCceEEEcCCCCEEEEEECCC--CeEEEEEec
Confidence 4444456666 444555555555433 345555543
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-13 Score=136.24 Aligned_cols=247 Identities=14% Similarity=0.141 Sum_probs=148.1
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCC-CCCCCCCCEEEEEcCCCCCCccccchh-hhHHHhhCCcEEEEecCC--C--
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQ-ASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVNYG--G-- 531 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~-~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~la~~G~~v~~~d~r--G-- 531 (729)
...+++.+..-|..+...+|.|++.... .++++++|||.++||..+....+.... ..+.+.+.|.+++.++-. +
T Consensus 14 ~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~~~ 93 (299)
T 4fol_A 14 LIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGDE 93 (299)
T ss_dssp EEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEEECSSCCSTT
T ss_pred EEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCChHHHHHhchHhHHHHHcCchhhccCCCcceee
Confidence 4566777665788889999999873211 113578999999999854433222122 334556679999998742 1
Q ss_pred -------CCCCc--hhH-HHh------hccCCCcccHHHHHHHHHHHHh----CCCCCCCcEEEEEcChHHHHHHHHHh-
Q 004816 532 -------STGYG--REF-RER------LLGRWGIVDVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALA- 590 (729)
Q Consensus 532 -------s~g~g--~~~-~~~------~~~~~~~~~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~~a~~~~~- 590 (729)
....| ..+ .+. ...++...-.+|+...++.-.. +...+.++.+|.|+||||+-|+.++.
T Consensus 94 ~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~al~ 173 (299)
T 4fol_A 94 VANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYLK 173 (299)
T ss_dssp SCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHHHH
T ss_pred cCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHHHh
Confidence 00001 000 000 0011111124455554443221 11234678999999999999999886
Q ss_pred --CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCC---C-CCCEEEEEeCCCCCCChH-
Q 004816 591 --FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDK---F-SCPIILFQGLEDKVVPPD- 662 (729)
Q Consensus 591 --~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~---i-~~PvL~i~G~~D~~vp~~- 662 (729)
+|+++.++.+.+|+.+.......... ....++ +...+...++...+++ . ..++++-+|++|......
T Consensus 174 ~~~~~~~~~~~s~s~~~~p~~~~~~~~~-----~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~i~id~G~~D~f~~~~l 248 (299)
T 4fol_A 174 GYSGKRYKSCSAFAPIVNPSNVPWGQKA-----FKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEHL 248 (299)
T ss_dssp TGGGTCCSEEEEESCCCCGGGSHHHHHH-----HHHHTC-----CGGGCHHHHGGGSCCCTTCCEEEEEETTCTTHHHHT
T ss_pred CCCCCceEEEEecccccCcccccccccc-----cccccccchhhhhhcCHHHHHHhcccCCCCceEEEecCCCcchhhhc
Confidence 47899999999998876433221111 111222 3445555555444333 2 257999999999874221
Q ss_pred HHHHHHHHHHhCCCC--EEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 663 QARKIYKALKENGLP--VALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 663 ~~~~~~~~l~~~g~~--~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
..+.+.++++++|.+ +++.+.||.+|.+. .+..+++..++|..++|+
T Consensus 249 ~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~---f~~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 249 KPELLLEAVKATSWQDYVEIKKVHGFDHSYY---FVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp CTHHHHHHHTTSTTTTCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHH---HHHHHHHHHHHHHHHhcC
Confidence 236789999988876 78999999899753 355778888999999886
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=140.04 Aligned_cols=215 Identities=12% Similarity=0.070 Sum_probs=126.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++....+ + ...|.||++||.+.+ ...|...+..|+ .+|.|+++|+||.|.+... ...+
T Consensus 12 ~g~~l~y~~~~~-G--------~~~p~vvllHG~~~~--~~~w~~~~~~L~-~~~rvia~DlrGhG~S~~~-----~~~~ 74 (276)
T 2wj6_A 12 FDNKLSYIDNQR-D--------TDGPAILLLPGWCHD--HRVYKYLIQELD-ADFRVIVPNWRGHGLSPSE-----VPDF 74 (276)
T ss_dssp TTEEEEEEECCC-C--------CSSCEEEEECCTTCC--GGGGHHHHHHHT-TTSCEEEECCTTCSSSCCC-----CCCC
T ss_pred CCeEEEEEEecC-C--------CCCCeEEEECCCCCc--HHHHHHHHHHHh-cCCEEEEeCCCCCCCCCCC-----CCCC
Confidence 788887544311 1 123789999998543 345677777776 4699999999986654321 1111
Q ss_pred Cc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEEeccccC--hhHHhh------hcc-
Q 004816 548 GI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVAD--LSMLRA------ETH- 615 (729)
Q Consensus 548 ~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-~~~~~a~v~~~~~~d--~~~~~~------~~~- 615 (729)
.. ...+|+.+.++.| +.+++.++||||||.+++.++. + |++++++|+.++... ...+.. ...
T Consensus 75 ~~~~~a~dl~~ll~~l------~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (276)
T 2wj6_A 75 GYQEQVKDALEILDQL------GVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPER 148 (276)
T ss_dssp CHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHHHHHHHHCTTT
T ss_pred CHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHHHhhhccCcch
Confidence 11 1144555555554 3468999999999999999998 8 999999999875321 000000 000
Q ss_pred ------hhhhhhhh---------hhcC-----Chhhh-----------hh-cCcccccCCCCCCEEEEEeCCCCCCC-h-
Q 004816 616 ------KFESRYID---------NLVG-----SEKDY-----------YE-KSPINFVDKFSCPIILFQGLEDKVVP-P- 661 (729)
Q Consensus 616 ------~~~~~~~~---------~~~~-----~~~~~-----------~~-~sp~~~~~~i~~PvL~i~G~~D~~vp-~- 661 (729)
.+...+.. .... ....+ .. .++...+..+++|+|+++|..|...+ +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~~~~~~~~~~~ 228 (276)
T 2wj6_A 149 WREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYE 228 (276)
T ss_dssp HHHHHHHHHHHHHTTBCCHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEEECCSCSHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhhhcchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEEecCccchhHH
Confidence 00000000 0000 00000 00 12233456788999999875443332 1
Q ss_pred HHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 662 DQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 662 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
....++.+.+ ...+++++|++||... .+...++.+.+.+|+.+.
T Consensus 229 ~~~~~~~~~~----p~a~~~~i~~~gH~~~-~e~P~~~~~~i~~Fl~~~ 272 (276)
T 2wj6_A 229 KINSDFAEQH----PWFSYAKLGGPTHFPA-IDVPDRAAVHIREFATAI 272 (276)
T ss_dssp HHHHHHHHHC----TTEEEEECCCSSSCHH-HHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC----CCeEEEEeCCCCCccc-ccCHHHHHHHHHHHHhhc
Confidence 2233333332 3579999999999643 356778888999999764
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-15 Score=154.92 Aligned_cols=206 Identities=15% Similarity=0.122 Sum_probs=122.4
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCC-cccHHHHHHHHHHHHhCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG-IVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~-~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
.|+||++||.+.+ ...|...+..|+ +||.|+++|+||.|.............+. ....+|+.++++++ +.
T Consensus 25 ~p~vv~lHG~~~~--~~~~~~~~~~l~-~g~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~l~~~l~~l------~~ 95 (304)
T 3b12_A 25 GPALLLLHGFPQN--LHMWARVAPLLA-NEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMASDQRELMRTL------GF 95 (304)
Confidence 4679999998543 345666777777 79999999999765543321000000111 01134555555443 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh----------------------------cchhhhh-
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE----------------------------THKFESR- 620 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~----------------------------~~~~~~~- 620 (729)
+++.++|||+||.+++.++. +|++++++|+.++.......... ...+...
T Consensus 96 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (304)
T 3b12_A 96 ERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDRFVARAYWHWYFLQQPAPYPEKVIGADPDTFYEGC 175 (304)
Confidence 68999999999999999988 89999999999876542111000 0000000
Q ss_pred hhhhhcC-----Ch---h-----------------hhhhc---C----cccccCCCCCCEEEEEeCCCCCC-ChHHHHHH
Q 004816 621 YIDNLVG-----SE---K-----------------DYYEK---S----PINFVDKFSCPIILFQGLEDKVV-PPDQARKI 667 (729)
Q Consensus 621 ~~~~~~~-----~~---~-----------------~~~~~---s----p~~~~~~i~~PvL~i~G~~D~~v-p~~~~~~~ 667 (729)
+...... .. + .+... + ....+.++++|+|+++|++|..+ +......+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~ 255 (304)
T 3b12_A 176 LFGWGATGADGFDPEQLEEYRKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQVQCPALVFSGSAGLMHSLFEMQVVW 255 (304)
Confidence 0000000 00 0 00000 0 00115678999999999999655 44444444
Q ss_pred HHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 668 YKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 668 ~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.+.+. .++++++ ++||.+. .+...++.+.+.+||.++..
T Consensus 256 ~~~~~----~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 294 (304)
T 3b12_A 256 APRLA----NMRFASL-PGGHFFV-DRFPDDTARILREFLSDARS 294 (304)
Confidence 44333 3577788 9999754 35566788889999988754
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-14 Score=142.87 Aligned_cols=197 Identities=13% Similarity=0.015 Sum_probs=113.4
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.||++||.++. ...|..++..|++ ||.|+++|+||.|. +... .....++++.+.+..+++.. .+.+
T Consensus 51 ~~~lvllHG~~~~--~~~~~~l~~~L~~-~~~v~~~D~~G~G~---S~~~-----~~~~~~~~~a~~~~~~l~~~-~~~~ 118 (280)
T 3qmv_A 51 PLRLVCFPYAGGT--VSAFRGWQERLGD-EVAVVPVQLPGRGL---RLRE-----RPYDTMEPLAEAVADALEEH-RLTH 118 (280)
T ss_dssp SEEEEEECCTTCC--GGGGTTHHHHHCT-TEEEEECCCTTSGG---GTTS-----CCCCSHHHHHHHHHHHHHHT-TCSS
T ss_pred CceEEEECCCCCC--hHHHHHHHHhcCC-CceEEEEeCCCCCC---CCCC-----CCCCCHHHHHHHHHHHHHHh-CCCC
Confidence 4789999997543 4456777888877 99999999997543 2111 11122344443333333321 1347
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcce----EEEEeccccChhH----Hhhh-cchhhhhhhhhhcC-------C------
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFK----AGASLYGVADLSM----LRAE-THKFESRYIDNLVG-------S------ 628 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~----a~v~~~~~~d~~~----~~~~-~~~~~~~~~~~~~~-------~------ 628 (729)
++.|+|||+||.+|+.++. +|+++. .+++......... .... ...+. ..+....+ +
T Consensus 119 ~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 197 (280)
T 3qmv_A 119 DYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALR-EVIRDLGGLDDADTLGAAYFDR 197 (280)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHH-HHHHHHTCCC---------CCT
T ss_pred CEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHH-HHHHHhCCCChhhhcCHHHHHH
Confidence 8999999999999999987 777665 5555443221000 0000 00000 00000000 0
Q ss_pred --------hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC-cccHHHH
Q 004816 629 --------EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK-AENIKFT 699 (729)
Q Consensus 629 --------~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~-~~~~~~~ 699 (729)
......+.+ ..+.++++|+|+++|++|.+++++.+..+.+.+. ..++++++++ ||.+.. .+...+.
T Consensus 198 ~~~~~~~~~~~~~~~~~-~~~~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~g-gH~~~~~~~~~~~~ 272 (280)
T 3qmv_A 198 RLPVLRADLRACERYDW-HPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTT---GSFLRRHLPG-NHFFLNGGPSRDRL 272 (280)
T ss_dssp THHHHHHHHHHHHTCCC-CCCCCBCSCEEEEEEEECSSSCHHHHHTTGGGBS---SCEEEEEEEE-ETTGGGSSHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-cCCCceecCeEEEEecCCCCcChHHHHHHHHhcC---CceEEEEecC-CCeEEcCchhHHHH
Confidence 000111111 1246788999999999999999988777665543 3567888875 887543 3445555
Q ss_pred HHHHHHH
Q 004816 700 LEQQMVF 706 (729)
Q Consensus 700 ~~~~~~f 706 (729)
.+.+.+|
T Consensus 273 ~~~i~~~ 279 (280)
T 3qmv_A 273 LAHLGTE 279 (280)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 5555554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-12 Score=135.03 Aligned_cols=232 Identities=11% Similarity=0.047 Sum_probs=152.2
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.++++...++.|++||+.+ ++....... ......++|+|||++|+++.... ..|+++|+.+++...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~--~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~d--------~~i~v~d~~~~~~~~ 68 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS--NKVTATIPV----GSNPMGAVISPDGTKVYVANAHS--------NDVSIIDTATNNVIA 68 (391)
T ss_dssp EEEEEETTTTEEEEEETTT--TEEEEEEEC----SSSEEEEEECTTSSEEEEEEGGG--------TEEEEEETTTTEEEE
T ss_pred EEEEEcCCCCEEEEEECCC--CeEEEEeec----CCCcceEEECCCCCEEEEECCCC--------CeEEEEECCCCeEEE
Confidence 4566666778999999987 554433322 12357789999999887665433 579999999988766
Q ss_pred eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEE
Q 004816 236 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV 314 (729)
Q Consensus 236 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~ 314 (729)
...........+|||||++|++.... ...|+++|+. +++. ...+... ..+..+.|+|||+ +++.
T Consensus 69 ~~~~~~~v~~~~~spdg~~l~~~~~~-------~~~v~v~d~~-~~~~--~~~~~~~-----~~~~~~~~s~dg~~l~~~ 133 (391)
T 1l0q_A 69 TVPAGSSPQGVAVSPDGKQVYVTNMA-------SSTLSVIDTT-SNTV--AGTVKTG-----KSPLGLALSPDGKKLYVT 133 (391)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETT-------TTEEEEEETT-TTEE--EEEEECS-----SSEEEEEECTTSSEEEEE
T ss_pred EEECCCCccceEECCCCCEEEEEECC-------CCEEEEEECC-CCeE--EEEEeCC-----CCcceEEECCCCCEEEEE
Confidence 65555567788999999999877632 2459999998 6664 3333332 3446789999999 5555
Q ss_pred EecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec
Q 004816 315 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 315 ~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
... ...|+++|+.+++............ .+.|.+ +++.++++...++ .|+++|+.+++.....
T Consensus 134 ~~~---~~~v~~~d~~~~~~~~~~~~~~~~~---------~~~~~~---dg~~l~~~~~~~~--~v~~~d~~~~~~~~~~ 196 (391)
T 1l0q_A 134 NNG---DKTVSVINTVTKAVINTVSVGRSPK---------GIAVTP---DGTKVYVANFDSM--SISVIDTVTNSVIDTV 196 (391)
T ss_dssp ETT---TTEEEEEETTTTEEEEEEECCSSEE---------EEEECT---TSSEEEEEETTTT--EEEEEETTTTEEEEEE
T ss_pred eCC---CCEEEEEECCCCcEEEEEecCCCcc---------eEEECC---CCCEEEEEeCCCC--EEEEEECCCCeEEEEE
Confidence 433 3478888998887665553322222 233433 6777776665555 4677788887765554
Q ss_pred cCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 395 IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 395 ~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.....+..+ ..+++..++..+.......++++|+.+++.
T Consensus 197 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 444455555 344444455554333456799999887754
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-12 Score=135.16 Aligned_cols=125 Identities=15% Similarity=0.031 Sum_probs=89.8
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhC---------CcEEEEecC
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR---------GWAFVDVNY 529 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~---------G~~v~~~d~ 529 (729)
.++.... +|..+++....+.+ ...|.||++||.+++. ..|...+..|++. ||.|+++|+
T Consensus 69 ~~~~~~i--~g~~i~~~~~~~~~--------~~~~plll~HG~~~s~--~~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl 136 (388)
T 4i19_A 69 PQFTTEI--DGATIHFLHVRSPE--------PDATPMVITHGWPGTP--VEFLDIIGPLTDPRAHGGDPADAFHLVIPSL 136 (388)
T ss_dssp CEEEEEE--TTEEEEEEEECCSS--------TTCEEEEEECCTTCCG--GGGHHHHHHHHCGGGGTSCGGGCEEEEEECC
T ss_pred CcEEEEE--CCeEEEEEEccCCC--------CCCCeEEEECCCCCCH--HHHHHHHHHHhCcccccCCCCCCeEEEEEcC
Confidence 3444444 79999987776543 2346799999986553 4466677788776 999999999
Q ss_pred CCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 530 GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 530 rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
+|.|.+.... . .....+++...+..+++. ++.+++.++|||+||.+++.++. +|++++++++.++.
T Consensus 137 ~G~G~S~~~~-----~--~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 203 (388)
T 4i19_A 137 PGFGLSGPLK-----S--AGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQ 203 (388)
T ss_dssp TTSGGGCCCS-----S--CCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCC
T ss_pred CCCCCCCCCC-----C--CCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCC
Confidence 9755432211 0 123466666666666655 23468999999999999999998 99999999999864
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.7e-12 Score=130.57 Aligned_cols=258 Identities=11% Similarity=0.072 Sum_probs=142.2
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCC--CCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSID--SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~--~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
+|+++++.+++....++.|.+|+++ + +..+.+..... ......++|+|||++|++..... ..|+++
T Consensus 44 ~~spdg~~l~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~--------~~i~~~ 111 (343)
T 1ri6_A 44 VVSPDKRYLYVGVRPEFRVLAYRIAPDD--GALTFAAESAL--PGSLTHISTDHQGQFVFVGSYNA--------GNVSVT 111 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTT--CCEEEEEEEEC--SSCCSEEEECTTSSEEEEEETTT--------TEEEEE
T ss_pred EECCCCCEEEEeecCCCeEEEEEecCCC--Cceeecccccc--CCCCcEEEEcCCCCEEEEEecCC--------CeEEEE
Confidence 3444455677766655788888776 5 55444432110 11346788999999877665432 457777
Q ss_pred EcCCC---ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeE--EecCCCCCcccccc
Q 004816 227 ALNGQ---NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV--CVAGFDPTIVESPT 301 (729)
Q Consensus 227 dl~~g---~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~--~~~~~~~~~~~~~~ 301 (729)
+++.+ +..............+|||||++|++.... ...|+++|+..+++..... ...... . ..+.
T Consensus 112 d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~-~--~~~~ 181 (343)
T 1ri6_A 112 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-------QDRICLFTVSDDGHLVAQDPAEVTTVE-G--AGPR 181 (343)
T ss_dssp EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEEEECST-T--CCEE
T ss_pred ECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-------CCEEEEEEecCCCceeeecccccccCC-C--CCcc
Confidence 87433 233333344445678999999998766522 2459999998326653322 222211 1 2345
Q ss_pred CceeCCCCc-EEEEEecCCCceEEEEEEc--CCCeEEEee---ccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC
Q 004816 302 EPKWSSKGE-LFFVTDRKNGFWNLHKWIE--SNNEVLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 375 (729)
Q Consensus 302 ~~~wspDG~-l~~~~~~~~g~~~l~~~d~--~~g~~~~l~---~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~ 375 (729)
.+.|+|||+ +++.... .+ .|.+++. .+++.+.+. ..........+ ...+.|.+ +++.++++...+
T Consensus 182 ~~~~~pdg~~l~~~~~~-~~--~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~i~~s~---dg~~l~v~~~~~ 252 (343)
T 1ri6_A 182 HMVFHPNEQYAYCVNEL-NS--SVDVWELKDPHGNIECVQTLDMMPENFSDTRW---AADIHITP---DGRHLYACDRTA 252 (343)
T ss_dssp EEEECTTSSEEEEEETT-TT--EEEEEESSCTTSCCEEEEEEECSCTTCCSCCC---EEEEEECT---TSSEEEEEETTT
T ss_pred eEEECCCCCEEEEEeCC-CC--EEEEEEecCCCCcEEEEeeccccCccccccCC---ccceEECC---CCCEEEEEecCC
Confidence 678999999 5555433 44 4555555 455543322 11111111111 11244443 677777666556
Q ss_pred CeEEEEEEECCCCceEeecc--CCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 376 GRSYLGILDDFGHSLSLLDI--PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 376 g~~~ly~~d~~~g~~~~lt~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
+...+|.++.+++..+.+.. ....+..+ ..+++..++.+...+....+|.++.++++.+++.
T Consensus 253 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 253 SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 76667666544665554421 11224444 3444555555554555556777788888765543
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-12 Score=128.07 Aligned_cols=224 Identities=13% Similarity=0.134 Sum_probs=124.7
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+...+.. +|.++++.... ..|.||++||.+.+. ..|......|+ .+|.|+++|+||.|.+...
T Consensus 6 ~~~~~~~--~~~~~~~~~~g------------~g~~~vllHG~~~~~--~~w~~~~~~l~-~~~~vi~~Dl~G~G~s~~~ 68 (291)
T 3qyj_A 6 EQTIVDT--TEARINLVKAG------------HGAPLLLLHGYPQTH--VMWHKIAPLLA-NNFTVVATDLRGYGDSSRP 68 (291)
T ss_dssp EEEEEEC--SSCEEEEEEEC------------CSSEEEEECCTTCCG--GGGTTTHHHHT-TTSEEEEECCTTSTTSCCC
T ss_pred ceeEEec--CCeEEEEEEcC------------CCCeEEEECCCCCCH--HHHHHHHHHHh-CCCEEEEEcCCCCCCCCCC
Confidence 3444444 68888865431 135799999986543 44555666664 5899999999976654322
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh-----
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA----- 612 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~----- 612 (729)
. ....+.....+++...+..+++. ...+++.++||||||.+++.++. +|++++++|+.++.........
T Consensus 69 ~---~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~ 143 (291)
T 3qyj_A 69 A---SVPHHINYSKRVMAQDQVEVMSK--LGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAPTHKMYRTTDQEF 143 (291)
T ss_dssp C---CCGGGGGGSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCHHHHHHTCCHHH
T ss_pred C---CCccccccCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCCCcchhhhcchhhh
Confidence 1 00000111233333222222222 12468999999999999999998 9999999999864321100000
Q ss_pred -----------hcchh--------hhhhhhhhc----C-----Ch--------------------hhhhhcC-------c
Q 004816 613 -----------ETHKF--------ESRYIDNLV----G-----SE--------------------KDYYEKS-------P 637 (729)
Q Consensus 613 -----------~~~~~--------~~~~~~~~~----~-----~~--------------------~~~~~~s-------p 637 (729)
..... ...+....+ . .+ ..|.... .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (291)
T 3qyj_A 144 ATAYYHWFFLIQPDNLPETLIGANPEYYLRKCLEKWGKDFSAFHPQALAEYIRCFSQPAVIHATCEDYRAAATIDLEHDE 223 (291)
T ss_dssp HHHTTHHHHTTCSTTHHHHHHHTCHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred hHHHHHHHHhccCCCchHHHHcCCHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhcCCCcchhHHHHHHcccccchhhcc
Confidence 00000 000000000 0 00 0111100 0
Q ss_pred ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 638 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 638 ~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.....++++|+|+++|++|...+... ..+.++..-..++..+++ +||.+ ..+...++.+.+.+||..
T Consensus 224 ~~~~~~i~~P~Lvi~G~~D~~~~~~~---~~~~~~~~~~~~~~~~~~-~GH~~-~~E~P~~v~~~i~~fL~~ 290 (291)
T 3qyj_A 224 LDMKQKISCPVLVLWGEKGIIGRKYD---VLATWRERAIDVSGQSLP-CGHFL-PEEAPEETYQAIYNFLTH 290 (291)
T ss_dssp TTTTCCBCSCEEEEEETTSSHHHHSC---HHHHHHTTBSSEEEEEES-SSSCH-HHHSHHHHHHHHHHHHHC
T ss_pred hhcCCccccceEEEecccccccchhh---HHHHHHhhcCCcceeecc-CCCCc-hhhCHHHHHHHHHHHHhc
Confidence 11246789999999999996532211 122233333467777886 89954 457778888889999864
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-11 Score=125.56 Aligned_cols=246 Identities=10% Similarity=-0.046 Sum_probs=144.0
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCC-CceeeecceecCCCCEEEEEEeccCCCCCC---cceEE
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQDALN---STTEI 223 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~-~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~---~~~~l 223 (729)
.|+++++.+++....++.|+++|+.+ ++.. .+...... .......++|||||++|++........+.+ ....|
T Consensus 40 ~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i 117 (337)
T 1pby_B 40 MVAPGGRIAYATVNKSESLVKIDLVT--GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117 (337)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred EEcCCCCEEEEEeCCCCeEEEEECCC--CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceE
Confidence 34444557777777778999999987 5543 34322100 001346788999999987765221100001 12679
Q ss_pred EEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 224 VAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 224 ~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
+++|+++++.............+.|||||++|++.+ ..|+++|++ +++. ...+... ......
T Consensus 118 ~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~----------~~i~~~d~~-~~~~--~~~~~~~-----~~~~~~ 179 (337)
T 1pby_B 118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG----------RDLHVMDPE-AGTL--VEDKPIQ-----SWEAET 179 (337)
T ss_dssp EEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES----------SSEEEEETT-TTEE--EEEECST-----TTTTTT
T ss_pred EEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC----------CeEEEEECC-CCcE--eeeeecc-----ccCCCc
Confidence 999999887665544444456788999999988762 239999998 6764 2233222 112345
Q ss_pred eeCCCCc-EEEEEecCCCce---------------------EEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeee
Q 004816 304 KWSSKGE-LFFVTDRKNGFW---------------------NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQS 361 (729)
Q Consensus 304 ~wspDG~-l~~~~~~~~g~~---------------------~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~ 361 (729)
.|+|||+ +++.... .+.. .|+++|+++++...+...... . ....+.|.+
T Consensus 180 ~~s~dg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~-----~~~~~~~s~- 250 (337)
T 1pby_B 180 YAQPDVLAVWNQHES-SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD--V-----FYFSTAVNP- 250 (337)
T ss_dssp BCCCBCCCCCCCCTT-TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS--S-----CEEEEEECT-
T ss_pred eeCCCccEEeeeccC-CCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCC--C-----ceeeEEECC-
Confidence 8999998 5544332 2221 688999998877633311100 0 111234443
Q ss_pred cCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 362 HGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 362 ~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+++.+++. ...|+++|+++++..........+..+ ..+++..++.++. ...++++|+++++.
T Consensus 251 --dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 251 --AKTRAFGA-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA---LGDLAAYDAETLEK 313 (337)
T ss_dssp --TSSEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB---SSEEEEEETTTCCE
T ss_pred --CCCEEEEe-----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcC---CCcEEEEECcCCcE
Confidence 67777665 247888899888754332222233344 3333444444432 46799999988764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-11 Score=123.55 Aligned_cols=240 Identities=11% Similarity=-0.018 Sum_probs=141.0
Q ss_pred EECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC
Q 004816 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (729)
Q Consensus 152 ~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g 231 (729)
.+.+.++++...++.|.++|+.+ ++........ .... .++|||||++|+++.... ..|+++|++++
T Consensus 7 ~~~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~---~~~~-~~~~s~dg~~l~~~~~~~--------~~i~~~d~~~~ 72 (331)
T 3u4y_A 7 TTSNFGIVVEQHLRRISFFSTDT--LEILNQITLG---YDFV-DTAITSDCSNVVVTSDFC--------QTLVQIETQLE 72 (331)
T ss_dssp CCCCEEEEEEGGGTEEEEEETTT--CCEEEEEECC---CCEE-EEEECSSSCEEEEEESTT--------CEEEEEECSSS
T ss_pred CCCCEEEEEecCCCeEEEEeCcc--cceeeeEEcc---CCcc-eEEEcCCCCEEEEEeCCC--------CeEEEEECCCC
Confidence 34456667776778999999987 6554433221 2233 788999999877665532 47999999998
Q ss_pred ce--EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 232 NI--QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 232 ~~--~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
+. +.+..+......++|||||++|+ +. ...+ ....|+++|++ +++. ...+... .....+.|+|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~-~~~~---~~~~i~v~d~~-~~~~--~~~~~~~-----~~~~~~~~spdg 139 (331)
T 3u4y_A 73 PPKVVAIQEGQSSMADVDITPDDQFAV-TV-TGLN---HPFNMQSYSFL-KNKF--ISTIPIP-----YDAVGIAISPNG 139 (331)
T ss_dssp SCEEEEEEECSSCCCCEEECTTSSEEE-EC-CCSS---SSCEEEEEETT-TTEE--EEEEECC-----TTEEEEEECTTS
T ss_pred ceeEEecccCCCCccceEECCCCCEEE-Ee-cCCC---CcccEEEEECC-CCCe--EEEEECC-----CCccceEECCCC
Confidence 85 34444443333489999999988 44 2211 12279999998 6665 3333332 334678999999
Q ss_pred c-EEEEEecCCCc-eEEEEEEcCCCeEEE----eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 310 E-LFFVTDRKNGF-WNLHKWIESNNEVLA----IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 310 ~-l~~~~~~~~g~-~~l~~~d~~~g~~~~----l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
+ +++.... .+. ..+|.++.. +.... +...... ...+.|.+ +++.+|+....++ .|+++
T Consensus 140 ~~l~~~~~~-~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~---------~~~~~~sp---dg~~l~v~~~~~~--~v~v~ 203 (331)
T 3u4y_A 140 NGLILIDRS-SANTVRRFKIDAD-GVLFDTGQEFISGGTR---------PFNITFTP---DGNFAFVANLIGN--SIGIL 203 (331)
T ss_dssp SCEEEEEET-TTTEEEEEEECTT-CCEEEEEEEEECSSSS---------EEEEEECT---TSSEEEEEETTTT--EEEEE
T ss_pred CEEEEEecC-CCceEEEEEECCC-CcEeecCCccccCCCC---------ccceEECC---CCCEEEEEeCCCC--eEEEE
Confidence 9 6655444 344 455555532 22211 1111111 12344443 6777777665454 46666
Q ss_pred ECCCCce----EeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 384 DDFGHSL----SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 384 d~~~g~~----~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
++++++. ..+..+ ..+..+ ..++++.++.+.. ....++++|+++++.+.+.
T Consensus 204 d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~~ 259 (331)
T 3u4y_A 204 ETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGTLSFVK 259 (331)
T ss_dssp ECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTEEEEEE
T ss_pred ECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCceeeec
Confidence 7777764 344433 333333 3334444444432 2345899999988765543
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.41 E-value=7.6e-12 Score=129.76 Aligned_cols=201 Identities=13% Similarity=0.082 Sum_probs=118.1
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d 569 (729)
.|.||++||++.+ ...|...+..|++ .+|.|+++|+||.|.+...- ...+.. ...+|+.++++.+... +
T Consensus 38 ~p~lvllHG~~~~--~~~w~~~~~~L~~~~~~~via~Dl~GhG~S~~~~----~~~~~~~~~a~dl~~~l~~l~~~--~- 108 (316)
T 3c5v_A 38 GPVLLLLHGGGHS--ALSWAVFTAAIISRVQCRIVALDLRSHGETKVKN----PEDLSAETMAKDVGNVVEAMYGD--L- 108 (316)
T ss_dssp SCEEEEECCTTCC--GGGGHHHHHHHHTTBCCEEEEECCTTSTTCBCSC----TTCCCHHHHHHHHHHHHHHHHTT--C-
T ss_pred CcEEEEECCCCcc--cccHHHHHHHHhhcCCeEEEEecCCCCCCCCCCC----ccccCHHHHHHHHHHHHHHHhcc--C-
Confidence 3789999998533 3456777778876 38999999999876543210 011111 1266777777777432 1
Q ss_pred CCcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccccChh--------HHhhh-cch---hh---hhh----------
Q 004816 570 EKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVADLS--------MLRAE-THK---FE---SRY---------- 621 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~d~~--------~~~~~-~~~---~~---~~~---------- 621 (729)
.+++.|+||||||.+|+.++. +|+ ++++|+.++..... .+... ... .. ...
T Consensus 109 ~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (316)
T 3c5v_A 109 PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLE 187 (316)
T ss_dssp CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCCHHHHHHHHHHHHHHHHHSCSCBSSHHHHHHHHHHTTSCCCHH
T ss_pred CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcccccchhhhHHHHHHHHhhCccccccHHHHHHHhhhcccccchh
Confidence 268999999999999999987 365 99999887532110 00000 000 00 000
Q ss_pred -----hhhhc-CCh-----------hhhh-hcCc--------------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHH
Q 004816 622 -----IDNLV-GSE-----------KDYY-EKSP--------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYK 669 (729)
Q Consensus 622 -----~~~~~-~~~-----------~~~~-~~sp--------------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~ 669 (729)
+.... ... ..+. .... ...+.++++|+|+++|++|.+.+... ..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lli~g~~D~~~~~~~----~~ 263 (316)
T 3c5v_A 188 SARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLT----IG 263 (316)
T ss_dssp HHHHHHHHHEEECC------------CEEESCCGGGGHHHHHHHHTTHHHHHHHSSSCEEEEESSCCCCCHHHH----HH
T ss_pred hhhhhhhHHhhhccccccccccccccceeeeecccchhhhhhhhhhhhHHHhhcCCCCEEEEEecccccccHHH----HH
Confidence 00000 000 0000 0000 01122578999999999998643221 12
Q ss_pred HHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 670 ALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 670 ~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
.+. ..+++++++++||... .+....+.+.+.+|+.+.
T Consensus 264 ~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 300 (316)
T 3c5v_A 264 QMQ---GKFQMQVLPQCGHAVH-EDAPDKVAEAVATFLIRH 300 (316)
T ss_dssp HHT---TCSEEEECCCCSSCHH-HHSHHHHHHHHHHHHHHT
T ss_pred hhC---CceeEEEcCCCCCccc-ccCHHHHHHHHHHHHHhc
Confidence 222 2358999999999753 345678888999999765
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-12 Score=131.65 Aligned_cols=206 Identities=11% Similarity=0.007 Sum_probs=124.3
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
..|.||++||.........|..++..| ..||.|+.+|++|.+..... ...+ ....+|+.+.++.+. +.
T Consensus 80 ~~~~lv~lhG~~~~~~~~~~~~~~~~L-~~~~~v~~~d~~G~G~~~~~-----~~~~-~~~~~~~~~~l~~~~-----~~ 147 (319)
T 3lcr_A 80 LGPQLILVCPTVMTTGPQVYSRLAEEL-DAGRRVSALVPPGFHGGQAL-----PATL-TVLVRSLADVVQAEV-----AD 147 (319)
T ss_dssp SSCEEEEECCSSTTCSGGGGHHHHHHH-CTTSEEEEEECTTSSTTCCE-----ESSH-HHHHHHHHHHHHHHH-----TT
T ss_pred CCCeEEEECCCCcCCCHHHHHHHHHHh-CCCceEEEeeCCCCCCCCCC-----CCCH-HHHHHHHHHHHHHhc-----CC
Confidence 357899999952233455677778877 78999999999976532111 0000 011333344443332 23
Q ss_pred CcEEEEEcChHHHHHHHHHh-C---CCcceEEEEeccccChhH--Hhhh-cchhhhhhhh-----hhcCC-h------hh
Q 004816 571 KRLCITGGSAGGYTTLAALA-F---RDTFKAGASLYGVADLSM--LRAE-THKFESRYID-----NLVGS-E------KD 631 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~---~~~~~a~v~~~~~~d~~~--~~~~-~~~~~~~~~~-----~~~~~-~------~~ 631 (729)
+++.|+|||+||.+++.++. + +++++++|+..+...... .... ...+...... ..... . ..
T Consensus 148 ~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (319)
T 3lcr_A 148 GEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQRITAQVW 227 (319)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Confidence 68999999999999999886 4 888999999876532111 0000 0000000000 00000 0 01
Q ss_pred hhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 632 YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 632 ~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+...........+++|+|+++|++ ..+++.....+.+.+.. .++++++++..|.+..+++..+..+.+.+||.+..
T Consensus 228 ~~~~~~~~~~~~i~~PvLli~g~~-~~~~~~~~~~~~~~~~~---~~~~~~~~g~H~~~~~~~~~~~va~~i~~fL~~~~ 303 (319)
T 3lcr_A 228 CLELLRGWRPEGLTAPTLYVRPAQ-PLVEQEKPEWRGDVLAA---MGQVVEAPGDHFTIIEGEHVASTAHIVGDWLREAH 303 (319)
T ss_dssp HHHHTTTCCCCCCSSCEEEEEESS-CSSSCCCTHHHHHHHHT---CSEEEEESSCTTGGGSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCCCEEEEEeCC-CCCCcccchhhhhcCCC---CceEEEeCCCcHHhhCcccHHHHHHHHHHHHHhcc
Confidence 111111122367899999999988 56666677777777663 45888888754444444678899999999999876
Q ss_pred C
Q 004816 712 G 712 (729)
Q Consensus 712 ~ 712 (729)
.
T Consensus 304 ~ 304 (319)
T 3lcr_A 304 A 304 (319)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-11 Score=125.63 Aligned_cols=264 Identities=6% Similarity=-0.012 Sum_probs=148.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
..+..+.|+| |+.+|+... +.++..+|..+..+ ++.+.+.... .. .......|+++++.+++....++.|
T Consensus 38 ~~~~~~~~spdg~~l~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~--~~---~~~~~~~~s~dg~~l~~~~~~~~~i 108 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDD-GALTFAAESA--LP---GSLTHISTDHQGQFVFVGSYNAGNV 108 (343)
T ss_dssp SCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTT-CCEEEEEEEE--CS---SCCSEEEECTTSSEEEEEETTTTEE
T ss_pred CCCceEEECCCCCEEEEeec---CCCeEEEEEecCCC-Cceeeccccc--cC---CCCcEEEEcCCCCEEEEEecCCCeE
Confidence 3567899999 777877764 23677777776431 2333221100 00 0111223334455677776667789
Q ss_pred EEEeCCCCC-CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceEEee-----e-C
Q 004816 168 YKHSIDSKD-SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQVLV-----S-G 239 (729)
Q Consensus 168 ~~~d~~~~~-~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~~lt-----~-~ 239 (729)
+++++..+. .+....... ......++|+|||++|+...... ..|+++++.+ ++...+. . .
T Consensus 109 ~~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~--------~~v~~~d~~~~~~~~~~~~~~~~~~~ 176 (343)
T 1ri6_A 109 SVTRLEDGLPVGVVDVVEG----LDGCHSANISPDNRTLWVPALKQ--------DRICLFTVSDDGHLVAQDPAEVTTVE 176 (343)
T ss_dssp EEEEEETTEEEEEEEEECC----CTTBCCCEECTTSSEEEEEEGGG--------TEEEEEEECTTSCEEEEEEEEEECST
T ss_pred EEEECCCCccccccccccC----CCCceEEEECCCCCEEEEecCCC--------CEEEEEEecCCCceeeecccccccCC
Confidence 999884200 122222222 12356788999999876554222 4689999887 6654322 1 1
Q ss_pred CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-CCCeeeeEEecCCCCCc--cccccCceeCCCCcEEEEEe
Q 004816 240 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTI--VESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 240 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-~g~~~~~~~~~~~~~~~--~~~~~~~~wspDG~l~~~~~ 316 (729)
.......+|+|||++|++.... ...|.+++++. +++.............. ......+.|+|||+.+|++.
T Consensus 177 ~~~~~~~~~~pdg~~l~~~~~~-------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~ 249 (343)
T 1ri6_A 177 GAGPRHMVFHPNEQYAYCVNEL-------NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 249 (343)
T ss_dssp TCCEEEEEECTTSSEEEEEETT-------TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred CCCcceEEECCCCCEEEEEeCC-------CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence 2234567899999988877622 34588888851 35443222222111000 01233588999999444444
Q ss_pred cCCCceEEEEEEcC--CCeEEEeec--cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEe
Q 004816 317 RKNGFWNLHKWIES--NNEVLAIYS--LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL 392 (729)
Q Consensus 317 ~~~g~~~l~~~d~~--~g~~~~l~~--~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~ 392 (729)
...+ .|.+++++ +++.+.+.. ...... .+.|.+ +++.+++....++...+|.++.++|+++.
T Consensus 250 ~~~~--~i~v~d~~~~~~~~~~~~~~~~~~~~~---------~~~~s~---dg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 250 RTAS--LITVFSVSEDGSVLSKEGFQPTETQPR---------GFNVDH---SGKYLIAAGQKSHHISVYEIVGEQGLLHE 315 (343)
T ss_dssp TTTT--EEEEEEECTTSCCEEEEEEEECSSSCC---------CEEECT---TSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred cCCC--EEEEEEEcCCCCceEEeeeecCCCccc---------eEEECC---CCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence 3134 45555554 555554431 111122 334443 67777776666788899999998887765
Q ss_pred ec
Q 004816 393 LD 394 (729)
Q Consensus 393 lt 394 (729)
+.
T Consensus 316 ~~ 317 (343)
T 1ri6_A 316 KG 317 (343)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.3e-11 Score=127.86 Aligned_cols=240 Identities=10% Similarity=0.029 Sum_probs=150.9
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCC--CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g 231 (729)
++.+++....++.|++||+.+ ++..+..... ......+...+|+|+|+.++ +.... ..|+++|++++
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-s~~~d--------~~v~~~d~~~~ 201 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINS--GQTVRLSPPEKYKKKLGFVETISIPEHNELWV-SQMQA--------NAVHVFDLKTL 201 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTT--CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEE-EEGGG--------TEEEEEETTTC
T ss_pred CCeEEEEeCCCCeEEEEECCC--CeEeeecCcccccccCCceeEEEEcCCCEEEE-EECCC--------CEEEEEECCCc
Confidence 567888877777899999987 6555433210 00123567788999998544 33322 57999999987
Q ss_pred ceEEe-eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 232 NIQVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 232 ~~~~l-t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
+.... ..........+|+|||++|++.... ...|+++|+. +++. ...+... ..+..+.|+|||+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~i~~~d~~-~~~~--~~~~~~~-----~~~~~~~~~~~g~ 266 (433)
T 3bws_A 202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWI-------SEDISVIDRK-TKLE--IRKTDKI-----GLPRGLLLSKDGK 266 (433)
T ss_dssp CEEEEEECSSSSEEEEEEETTTTEEEEEETT-------TTEEEEEETT-TTEE--EEECCCC-----SEEEEEEECTTSS
T ss_pred eEEEEEcCCCCCeeEEEEcCCCCEEEEEecC-------CCcEEEEECC-CCcE--EEEecCC-----CCceEEEEcCCCC
Confidence 76543 3334456778999999988766622 2469999998 6654 3333332 3456789999998
Q ss_pred -EEEEEecCC----CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 311 -LFFVTDRKN----GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 311 -l~~~~~~~~----g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
+++...... ....|+++|+.+++...............|.+ +++.++++...++ .|+++++
T Consensus 267 ~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~------------~g~~l~~~~~~~~--~v~v~d~ 332 (433)
T 3bws_A 267 ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGN------------TENKIYVSDMCCS--KIEVYDL 332 (433)
T ss_dssp EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECS------------STTEEEEEETTTT--EEEEEET
T ss_pred EEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECC------------CCCEEEEEecCCC--EEEEEEC
Confidence 555554311 24579999998887665543222222233332 6777877766666 4566688
Q ss_pred CCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCC------------ceEEEEEcCCCcc
Q 004816 386 FGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEP------------SSVAKVTLDDHKL 433 (729)
Q Consensus 386 ~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~------------~~ly~~d~~~~~~ 433 (729)
++++..........+..+ ..+++..++........ ..++++|+.+++.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 333 KEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred CCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 777655443344455566 44444445555443332 4799999888764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.9e-11 Score=122.78 Aligned_cols=239 Identities=8% Similarity=-0.001 Sum_probs=142.8
Q ss_pred ECCEEEEEECC------CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 153 FGDTVIFSNYK------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 153 ~~~~i~~~~~~------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
+++.+++.... ++.|+++|+.+ ++....... ......+.|+|||+++++..... ..|+++
T Consensus 51 dg~~l~~~~~~~~~~~~~~~v~~~d~~~--~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~--------~~v~~~ 116 (353)
T 3vgz_A 51 QENALWLATSQSRKLDKGGVVYRLDPVT--LEVTQAIHN----DLKPFGATINNTTQTLWFGNTVN--------SAVTAI 116 (353)
T ss_dssp TTTEEEEEECCCTTTEESEEEEEECTTT--CCEEEEEEE----SSCCCSEEEETTTTEEEEEETTT--------TEEEEE
T ss_pred CCCEEEEEcCCCcCCCCCccEEEEcCCC--CeEEEEEec----CCCcceEEECCCCCEEEEEecCC--------CEEEEE
Confidence 34455555433 45899999987 554333222 12246788999999876665432 579999
Q ss_pred EcCCCceEEeeeC-CC---------eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 227 ALNGQNIQVLVSG-SD---------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 227 dl~~g~~~~lt~~-~~---------~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
|+++++....... .. ......|||||++|++..... ...|+++|++ +++. ...+....
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~~i~~~d~~-~~~~--~~~~~~~~--- 184 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK------ESVIWVVDGG-NIKL--KTAIQNTG--- 184 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS------SCEEEEEETT-TTEE--EEEECCCC---
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC------CceEEEEcCC-CCce--EEEecCCC---
Confidence 9999887544332 11 135679999999987776332 3469999988 6664 33333222
Q ss_pred cccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 297 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 297 ~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
.....+.|+|||+.+|+... ...|+++|+.+++.......... .+. .....+.|.+ +++.+|+... +
T Consensus 185 -~~~~~~~~s~dg~~l~~~~~---~~~i~~~d~~~~~~~~~~~~~~~--~~~--~~~~~~~~s~---dg~~l~~~~~--~ 251 (353)
T 3vgz_A 185 -KMSTGLALDSEGKRLYTTNA---DGELITIDTADNKILSRKKLLDD--GKE--HFFINISLDT---ARQRAFITDS--K 251 (353)
T ss_dssp -TTCCCCEEETTTTEEEEECT---TSEEEEEETTTTEEEEEEECCCS--SSC--CCEEEEEEET---TTTEEEEEES--S
T ss_pred -CccceEEECCCCCEEEEEcC---CCeEEEEECCCCeEEEEEEcCCC--CCC--cccceEEECC---CCCEEEEEeC--C
Confidence 34567899999994444443 24688899998876654422100 000 0011234443 7777776653 3
Q ss_pred eEEEEEEECCCCceE-eeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 377 RSYLGILDDFGHSLS-LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 377 ~~~ly~~d~~~g~~~-~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
...|+++|+++++.. .+..+......++++++.+++ +... ...++++|+.+++.
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v-~~~~--~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYV-THRQ--AGKVSVIDAKSYKV 306 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEE-EETT--TTEEEEEETTTTEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEE-EECC--CCeEEEEECCCCeE
Confidence 346888899887754 333333221222445555444 4322 24788999887764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.9e-11 Score=124.54 Aligned_cols=270 Identities=9% Similarity=0.008 Sum_probs=143.6
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
..+..+.|+| |+ +|.+.... +.++..+|.. . +++.+.+.... .........+|+++++.+++....++.+
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~-~~~~v~~~~~--~-~g~~~~~~~~~----~~~~~p~~~a~spdg~~l~~~~~~~~~v 110 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKED-DEGGIAAWQI--D-GQTAHKLNTVV----APGTPPAYVAVDEARQLVYSANYHKGTA 110 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEET-TEEEEEEEEE--E-TTEEEEEEEEE----EESCCCSEEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEEccCCe-EEEEEecC-CCceEEEEEe--c-CCcEEEeeeee----cCCCCCEEEEECCCCCEEEEEeCCCCEE
Confidence 4667899999 66 87776532 2345445544 3 12333332100 0000111223444455677776667788
Q ss_pred EEEeCCCCCCCCeecCCC---CCC-----CceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC-CCceEEeee
Q 004816 168 YKHSIDSKDSSPLPITPD---YGE-----PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQNIQVLVS 238 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~---~~~-----~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~-~g~~~~lt~ 238 (729)
.+++++.. +..+.+... ... .......++|||||+ +++. ... ...|++++++ +|+...+..
T Consensus 111 ~v~~~~~~-g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~-~~~-------~~~v~~~~~~~~g~~~~~~~ 180 (347)
T 3hfq_A 111 EVMKIAAD-GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI-DLG-------SDKVYVYNVSDAGQLSEQSV 180 (347)
T ss_dssp EEEEECTT-SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE-ETT-------TTEEEEEEECTTSCEEEEEE
T ss_pred EEEEeCCC-CCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE-eCC-------CCEEEEEEECCCCcEEEeee
Confidence 88887531 444433211 000 011245678999999 5444 322 1468888887 566554421
Q ss_pred ----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-CCCeeeeEEecCCCCCcc--ccccCceeCCCCc-
Q 004816 239 ----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTIV--ESPTEPKWSSKGE- 310 (729)
Q Consensus 239 ----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-~g~~~~~~~~~~~~~~~~--~~~~~~~wspDG~- 310 (729)
........+|||||++|++.... ...+.+++++. +|+.............+. .....++|+|||+
T Consensus 181 ~~~~~g~~p~~~~~spdg~~l~v~~~~-------~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 181 LTMEAGFGPRHLVFSPDGQYAFLAGEL-------SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETT-------TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred EEcCCCCCCceEEECCCCCEEEEEeCC-------CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 11133457999999988876522 23477777662 355433333322210000 1244588999999
Q ss_pred EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 311 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 311 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
||+.... .+.-.+|.++. +++.+.+........ ....+.|.+ +++.|++....++...||.++.++|++
T Consensus 254 l~v~~~~-~~~v~v~~~~~-~g~~~~~~~~~~~~~------~~~~~~~sp---dg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 254 LYVSNRG-YNTLAVFAVTA-DGHLTLIQQISTEGD------FPRDFDLDP---TEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEEEET-TTEEEEEEECG-GGCEEEEEEEECSSS------CCCEEEECT---TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEeCC-CCEEEEEEECC-CCcEEEeEEEecCCC------CcCeEEECC---CCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 5544433 44444444432 344444332111000 112344543 777777776667888899999999988
Q ss_pred Eeecc
Q 004816 391 SLLDI 395 (729)
Q Consensus 391 ~~lt~ 395 (729)
+.+..
T Consensus 323 ~~~~~ 327 (347)
T 3hfq_A 323 SLLQK 327 (347)
T ss_dssp EEEEE
T ss_pred Eeccc
Confidence 76653
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-13 Score=136.67 Aligned_cols=143 Identities=16% Similarity=0.169 Sum_probs=98.9
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHh-CCCcce-EEEEeccccChhHHhhhcchhhhhhhhhhcC---C----hhhhhhc
Q 004816 565 SGKADEKRLCITGGSAGGYTTLAALA-FRDTFK-AGASLYGVADLSMLRAETHKFESRYIDNLVG---S----EKDYYEK 635 (729)
Q Consensus 565 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~-a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~ 635 (729)
+..+|++||+|+|+|+||++++.++. +|++|+ +++++++.......... ....+...+. . .+.+..
T Consensus 5 ~~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~- 79 (318)
T 2d81_A 5 AFNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQY----YTSCMYNGYPSITTPTANMKSWSG- 79 (318)
T ss_dssp CCCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSC----GGGGSTTCCCCCHHHHHHHHHHBT-
T ss_pred hcCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchHH----HHHHhhccCCCCCCHHHHHHHhhc-
Confidence 44689999999999999999998887 999999 87777653211000000 0000000000 0 011111
Q ss_pred CcccccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCC--CEEEEEECCCCcccCCccc-----------------
Q 004816 636 SPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL--PVALVEYEGEQHGFRKAEN----------------- 695 (729)
Q Consensus 636 sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~~~~gH~~~~~~~----------------- 695 (729)
+++..+.+++ .|+|++||++|.+||++++++++++|++.+. +++++++++++|.+.....
T Consensus 80 ~~i~~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~pyi~~ 159 (318)
T 2d81_A 80 NQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISN 159 (318)
T ss_dssp TTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEE
T ss_pred ccCChhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCCCcccC
Confidence 4555555554 6899999999999999999999999999883 7999999999999743321
Q ss_pred -HHHHHHHHHHHHHHHhC
Q 004816 696 -IKFTLEQQMVFFARVVG 712 (729)
Q Consensus 696 -~~~~~~~~~~fl~~~l~ 712 (729)
.......|++||...+.
T Consensus 160 ~~~d~~~~i~~ff~g~~~ 177 (318)
T 2d81_A 160 CNYDGAGAALKWIYGSLN 177 (318)
T ss_dssp CSSCHHHHHHHHHHSSCC
T ss_pred CCChHHHHHHHHHhccCC
Confidence 24667789999987665
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.3e-11 Score=122.75 Aligned_cols=233 Identities=10% Similarity=-0.003 Sum_probs=138.8
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCee-cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
++++...++.|+++|+.+ ++... +..... ......++|||||++++++.... ..|+++|+.+++...
T Consensus 3 ~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~--------~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEK--MAVDKVITIADA--GPTPMVPMVAPGGRIAYATVNKS--------ESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEETTTEEEEEETTT--TEEEEEEECTTC--TTCCCCEEECTTSSEEEEEETTT--------TEEEEEETTTCCEEE
T ss_pred EEEEcCCCCeEEEEECCC--CcEEEEEEcCCC--CCCccceEEcCCCCEEEEEeCCC--------CeEEEEECCCCCeEe
Confidence 456666778999999987 54433 332210 00346788999999877665432 579999999887654
Q ss_pred eeeCCC------eeeeeeeCCCCCeEEEEEecCC-CCCC---CCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 236 LVSGSD------FYAFPRMDPRGERMAWIEWHHP-NMPW---DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 236 lt~~~~------~~~~~~~SPDG~~la~~~~~~~-~~~~---~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
...... ....++|||||++|++...... ...+ ....|+++|++ +++. ...+... ..+..+.|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~--~~~~~~~-----~~~~~~~~ 142 (337)
T 1pby_B 71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSR--RKAFEAP-----RQITMLAW 142 (337)
T ss_dssp EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEE--EEEEECC-----SSCCCEEE
T ss_pred eEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC-CCcE--EEEEeCC-----CCcceeEE
Confidence 333211 3456799999999988752100 0001 13679999998 6654 2233222 33467889
Q ss_pred CCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe-------
Q 004816 306 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR------- 377 (729)
Q Consensus 306 spDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~------- 377 (729)
+|||+ +++. + ..|+++|+++++...............|++ +++.+++.....+.
T Consensus 143 s~dg~~l~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~------------dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 143 ARDGSKLYGL-G-----RDLHVMDPEAGTLVEDKPIQSWEAETYAQP------------DVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp CTTSSCEEEE-S-----SSEEEEETTTTEEEEEECSTTTTTTTBCCC------------BCCCCCCCCTTTTEEEEEEEE
T ss_pred CCCCCEEEEe-C-----CeEEEEECCCCcEeeeeeccccCCCceeCC------------CccEEeeeccCCCceeeeeec
Confidence 99999 6655 2 358899999887765443222112234444 33333332221111
Q ss_pred --------------EEEEEEECCCCceEeeccC--CcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 378 --------------SYLGILDDFGHSLSLLDIP--FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 378 --------------~~ly~~d~~~g~~~~lt~~--~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
..|+++|+++++...+... ...+..+ +++++.+ +.. ...++++|+++++.
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l-~~~-----~~~v~~~d~~~~~~ 272 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA-FGA-----YNVLESFDLEKNAS 272 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE-EEE-----ESEEEEEETTTTEE
T ss_pred cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE-EEe-----CCeEEEEECCCCcC
Confidence 2689999999887644322 2233344 4444444 444 25799999988764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-10 Score=123.39 Aligned_cols=287 Identities=10% Similarity=0.024 Sum_probs=148.8
Q ss_pred CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECC---CCcEEE--EeCCCCCCCCeecCCC
Q 004816 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK---DQRLYK--HSIDSKDSSPLPITPD 185 (729)
Q Consensus 111 ~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~--~d~~~~~~~~~~lt~~ 185 (729)
+.+...+|.++.. +|+.+.+.... .......+|+++++.|++.... .+.|.+ ++.++ ++.+++...
T Consensus 25 ~~~~i~~~~~d~~-~g~~~~~~~~~------~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~--g~~~~~~~~ 95 (361)
T 3scy_A 25 NSKGIYTFRFNEE-TGESLPLSDAE------VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK--GTLHLLNTQ 95 (361)
T ss_dssp SCCEEEEEEEETT-TCCEEEEEEEE------CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT--TEEEEEEEE
T ss_pred CCCCEEEEEEeCC-CCCEEEeeccc------CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC--CcEEEeeEe
Confidence 4556667777665 23333332110 0111223444455567666653 355644 45444 555555432
Q ss_pred CCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceEEe---e--eCCC---------eeeeeeeCC
Q 004816 186 YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQVL---V--SGSD---------FYAFPRMDP 250 (729)
Q Consensus 186 ~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~~l---t--~~~~---------~~~~~~~SP 250 (729)
... .......++ ||++|+...... ..|.+++++. +....+ . .+.+ .....+|||
T Consensus 96 ~~~-~~~p~~~~~--dg~~l~~~~~~~--------~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 96 KTM-GADPCYLTT--NGKNIVTANYSG--------GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp ECS-SSCEEEEEE--CSSEEEEEETTT--------TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred ccC-CCCcEEEEE--CCCEEEEEECCC--------CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence 100 112233344 999876554322 4677888764 322221 1 1111 124579999
Q ss_pred CCCeEEEEEecCCCCCCCCcEEEEEEecCCC-----C-eeee----EEecCCCCCccccccCceeCCCCcEEEEEecCCC
Q 004816 251 RGERMAWIEWHHPNMPWDKAELWVGYISENG-----D-VYKR----VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 251 DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g-----~-~~~~----~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g 320 (729)
||++|++.... ...|++++++..+ + +... ....... .....+.|+|||+.+|+... .
T Consensus 165 dg~~l~~~~~~-------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~--~ 231 (361)
T 3scy_A 165 DGKYLLADDLG-------TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG----SGPRHLIFNSDGKFAYLINE--I 231 (361)
T ss_dssp TSSEEEEEETT-------TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT----CCEEEEEECTTSSEEEEEET--T
T ss_pred CCCEEEEEeCC-------CCEEEEEEEcCCCCcccccceeecccccceecCCC----CCCeEEEEcCCCCEEEEEcC--C
Confidence 99999877632 2457788776322 2 2111 1112222 34457899999994444443 2
Q ss_pred ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEE-CCeEEEEEEECCCCceEeeccC--C
Q 004816 321 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ-NGRSYLGILDDFGHSLSLLDIP--F 397 (729)
Q Consensus 321 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~-~g~~~ly~~d~~~g~~~~lt~~--~ 397 (729)
...|.++++++++.+.+......... ......+.|.+ +++.||++... ++...||.++.++++.+.+..- .
T Consensus 232 ~~~v~v~~~~~g~~~~~~~~~~~~~~---~~~~~~i~~sp---dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g 305 (361)
T 3scy_A 232 GGTVIAFRYADGMLDEIQTVAADTVN---AQGSGDIHLSP---DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG 305 (361)
T ss_dssp TCEEEEEEEETTEEEEEEEEESCSSC---CCCEEEEEECT---TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS
T ss_pred CCeEEEEEecCCceEEeEEEecCCCC---CCCcccEEECC---CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC
Confidence 23566677777776554421110000 00112445554 77777766555 5777888887777776554321 2
Q ss_pred cceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 398 TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 398 ~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
.....+ ..+++++++.++..+....+|.+|.++++++.+
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 233444 444555566666555555678888888876543
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=128.30 Aligned_cols=210 Identities=10% Similarity=-0.048 Sum_probs=124.8
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcE---E----------EEecCCCCCCCchhHHHhh--ccCCC-cccHHHHH
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWA---F----------VDVNYGGSTGYGREFRERL--LGRWG-IVDVNDCC 556 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~---v----------~~~d~rGs~g~g~~~~~~~--~~~~~-~~~~~D~~ 556 (729)
+.||++||...+ ...|..+++.|+++|+. + +.+|-++.+..+....... ..... ....+|+.
T Consensus 4 ~pvvllHG~~~~--~~~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~ 81 (254)
T 3ds8_A 4 IPIILIHGSGGN--ASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLK 81 (254)
T ss_dssp CCEEEECCTTCC--TTTTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCC--cchHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHHHHHHH
Confidence 347789998443 45678888999888753 2 3333221111111100000 00011 11256677
Q ss_pred HHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC-----cceEEEEeccccChhHHhhhcchhhhhhhhhhcCChh
Q 004816 557 SCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD-----TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEK 630 (729)
Q Consensus 557 ~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~-----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 630 (729)
.+++.+.++.. .+++.++||||||.+++.++. +|+ +++++|++++..+............... ......
T Consensus 82 ~~i~~l~~~~~--~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~---~p~~~~ 156 (254)
T 3ds8_A 82 IAMEDLKSRYG--FTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGMDLSFKK---LPNSTP 156 (254)
T ss_dssp HHHHHHHHHHC--CSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCSCTTCSS---CSSCCH
T ss_pred HHHHHHHHHhC--CCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCccccccccccccccc---CCcchH
Confidence 77788877643 368999999999999999987 877 8999999998765432221111100000 000011
Q ss_pred hhhhcC-cccccCCCCCCEEEEEeC------CCCCCChHHHHHHHHHHHhCCCCEEEEEECC--CCcccCCcccHHHHHH
Q 004816 631 DYYEKS-PINFVDKFSCPIILFQGL------EDKVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKAENIKFTLE 701 (729)
Q Consensus 631 ~~~~~s-p~~~~~~i~~PvL~i~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~~~~~~~~~ 701 (729)
.+.... ....+.+ ++|+|.|+|. .|.+||+..++.+...++......+.+++.+ ++|.... ++ .+..+
T Consensus 157 ~~~~~~~~~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~~~~~~~~~~~g~~a~Hs~l~-~~-~~v~~ 233 (254)
T 3ds8_A 157 QMDYFIKNQTEVSP-DLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIEDIQVGEDAVHQTLH-ET-PKSIE 233 (254)
T ss_dssp HHHHHHHTGGGSCT-TCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTTBSEEEEEEEESGGGCGGGGG-GS-HHHHH
T ss_pred HHHHHHHHHhhCCC-CcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhccCcceEEEEEeCCCCchhccc-CC-HHHHH
Confidence 111100 0111222 6899999999 9999999999988877776555566667766 6687533 23 35778
Q ss_pred HHHHHHHHHhC
Q 004816 702 QQMVFFARVVG 712 (729)
Q Consensus 702 ~~~~fl~~~l~ 712 (729)
.+..||.++..
T Consensus 234 ~i~~fL~~~~~ 244 (254)
T 3ds8_A 234 KTYWFLEKFKT 244 (254)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHHhcC
Confidence 88888888755
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-10 Score=114.68 Aligned_cols=267 Identities=10% Similarity=0.025 Sum_probs=157.7
Q ss_pred CccCceEEcC-C---CcEEEEeecCCCCCceEEEEcCCCCCCCCc-ccCCCCCcccccccccCCceEEEECC-EEEEEEC
Q 004816 89 KRLGGTAVDG-H---GRLIWLESRPTEAGRGVLVKEPAKAGDEPS-DITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNY 162 (729)
Q Consensus 89 ~~~~~~~~~p-g---~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 162 (729)
..+.++.|+| + +.+..+.. .++...+|..... +.. .....+ +..+..+..++.+ .++++..
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs---~D~~v~vW~~~~~---~~~~~~~l~g-------h~~~v~~~~~~~~~~~l~s~s 99 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGS---LDDLVKVWKWRDE---RLDLQWSLEG-------HQLGVVSVDISHTLPIAASSS 99 (321)
T ss_dssp SCEEEEEEC-------CEEEEEE---TTSCEEEEEEETT---EEEEEEEECC-------CSSCEEEEEECSSSSEEEEEE
T ss_pred CcEEEEEEecCCCCCCCEEEEEc---CCCCEEEEECCCC---Ceeeeeeecc-------CCCCEEEEEECCCCCEEEEEe
Confidence 3456788876 3 23444433 3567778876432 111 101111 1222334444433 4666777
Q ss_pred CCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-eeeCC
Q 004816 163 KDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVSGS 240 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~~~ 240 (729)
.++.|.+||+.+ ++ ...+... .......+|+|||+.|+....+ ..|.++++.+++... +....
T Consensus 100 ~D~~i~lWd~~~--~~~~~~~~~~----~~~~~~~~~spdg~~l~~g~~d---------g~v~i~~~~~~~~~~~~~~~~ 164 (321)
T 3ow8_A 100 LDAHIRLWDLEN--GKQIKSIDAG----PVDAWTLAFSPDSQYLATGTHV---------GKVNIFGVESGKKEYSLDTRG 164 (321)
T ss_dssp TTSEEEEEETTT--TEEEEEEECC----TTCCCCEEECTTSSEEEEECTT---------SEEEEEETTTCSEEEEEECSS
T ss_pred CCCcEEEEECCC--CCEEEEEeCC----CccEEEEEECCCCCEEEEEcCC---------CcEEEEEcCCCceeEEecCCC
Confidence 788999999987 43 3344433 2345678899999987765432 468889998877654 33344
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCC
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g 320 (729)
......+|||||++|+..+. ...|.++|+. +++. ...+.+.. ..+..+.|+|||++++.... .+
T Consensus 165 ~~v~~~~~spdg~~lasg~~--------dg~i~iwd~~-~~~~--~~~~~~h~----~~v~~l~~spd~~~l~s~s~-dg 228 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAI--------DGIINIFDIA-TGKL--LHTLEGHA----MPIRSLTFSPDSQLLVTASD-DG 228 (321)
T ss_dssp SCEEEEEECTTSSEEEEEET--------TSCEEEEETT-TTEE--EEEECCCS----SCCCEEEECTTSCEEEEECT-TS
T ss_pred ceEEEEEECCCCCEEEEEcC--------CCeEEEEECC-CCcE--EEEEcccC----CceeEEEEcCCCCEEEEEcC-CC
Confidence 55678899999999987662 2348999998 6654 44555554 56678899999995555544 34
Q ss_pred ceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-EeeccCCc
Q 004816 321 FWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFT 398 (729)
Q Consensus 321 ~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~~lt~~~~ 398 (729)
.|.++|..+++..... .....+.. +.|.+ +++ ++++...++...|| |+.+++. ..+.....
T Consensus 229 --~i~iwd~~~~~~~~~~~~h~~~v~~---------~~~sp---~~~-~l~s~s~D~~v~iw--d~~~~~~~~~~~~h~~ 291 (321)
T 3ow8_A 229 --YIKIYDVQHANLAGTLSGHASWVLN---------VAFCP---DDT-HFVSSSSDKSVKVW--DVGTRTCVHTFFDHQD 291 (321)
T ss_dssp --CEEEEETTTCCEEEEECCCSSCEEE---------EEECT---TSS-EEEEEETTSCEEEE--ETTTTEEEEEECCCSS
T ss_pred --eEEEEECCCcceeEEEcCCCCceEE---------EEECC---CCC-EEEEEeCCCcEEEE--eCCCCEEEEEEcCCCC
Confidence 3666687776544333 22222223 33432 554 45566677876666 6666653 34444555
Q ss_pred ceEEe-eeeCCEEEEEEeC
Q 004816 399 DIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 399 ~v~~~-~~~~~~~~~~~~~ 416 (729)
.|..+ ..+++..++.++.
T Consensus 292 ~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 292 QVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp CEEEEEECTTSSEEEEEET
T ss_pred cEEEEEECCCCCEEEEEeC
Confidence 67777 4444445555543
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.1e-12 Score=128.92 Aligned_cols=200 Identities=10% Similarity=-0.014 Sum_probs=119.4
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHH-HHHhCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKA 568 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~ 568 (729)
...|.||++||.+.......|......|. .+|.|+.+|++|.+..... ...++++...+. .+.+. .
T Consensus 65 ~~~~~lvllhG~~~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~----------~~~~~~~a~~~~~~l~~~--~ 131 (300)
T 1kez_A 65 PGEVTVICCAGTAAISGPHEFTRLAGALR-GIAPVRAVPQPGYEEGEPL----------PSSMAAVAAVQADAVIRT--Q 131 (300)
T ss_dssp SCSSEEEECCCSSTTCSTTTTHHHHHHTS-SSCCBCCCCCTTSSTTCCB----------CSSHHHHHHHHHHHHHHH--C
T ss_pred CCCCeEEEECCCcccCcHHHHHHHHHhcC-CCceEEEecCCCCCCCCCC----------CCCHHHHHHHHHHHHHHh--c
Confidence 44688999999854432355666666665 4699999999976542211 122444443332 44443 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CC---CcceEEEEeccccChhH-HhhhcchhhhhhhhhhcCC------------hhh
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVADLSM-LRAETHKFESRYIDNLVGS------------EKD 631 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~---~~~~a~v~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~------------~~~ 631 (729)
+.+++.|+|||+||.+++.++. +| ++++++|+.++...... .... +........... ...
T Consensus 132 ~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
T 1kez_A 132 GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNA---WLEELTATLFDRETVRMDDTRLTALGA 208 (300)
T ss_dssp SSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHHH---HHHHHHGGGCCCCSSCCCHHHHHHHHH
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHHH---HHHHHHHHHHhCcCCccchHHHHHHHH
Confidence 3468999999999999999987 66 58999999987653221 1000 000000111100 011
Q ss_pred hhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC-CCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 632 YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN-GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 632 ~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+...-......++++|+|+++|+ |..+++.. .. +... ..+++++++++ ||.+...+....+.+.+.+|+.+.
T Consensus 209 ~~~~~~~~~~~~i~~P~lii~G~-d~~~~~~~-~~----~~~~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i~~fl~~~ 281 (300)
T 1kez_A 209 YDRLTGQWRPRETGLPTLLVSAG-EPMGPWPD-DS----WKPTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLGGG 281 (300)
T ss_dssp HHHHTTTCCCCCCSCCBEEEEES-SCSSCCCS-SC----CSCCCSSCCEEEEESS-CTTTSSSSCSHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCCCCCCCEEEEEeC-CCCCCCcc-cc----hhhhcCCCCeEEEecC-CChhhccccHHHHHHHHHHHHHhc
Confidence 11110111346789999999995 66666544 22 2222 22568999999 998653356678888888998776
Q ss_pred hC
Q 004816 711 VG 712 (729)
Q Consensus 711 l~ 712 (729)
..
T Consensus 282 ~~ 283 (300)
T 1kez_A 282 NS 283 (300)
T ss_dssp --
T ss_pred cC
Confidence 54
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-09 Score=113.54 Aligned_cols=240 Identities=9% Similarity=-0.011 Sum_probs=147.2
Q ss_pred CceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCC-CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 147 ~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
..+..++++ .+++... ++.|.+|++.++ +....+.... ......+...+|+|||+.|+....+ ..|.
T Consensus 54 v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~ 122 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGG-KGCVKVWDISHP-GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA---------STLS 122 (337)
T ss_dssp CCEEEECSSSSEEEEEC-BSEEEEEETTST-TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---------SEEE
T ss_pred eEEEEEecCCcEEEEcC-CCeEEEEECCCC-CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC---------CcEE
Confidence 334444433 3444444 789999999862 2222221100 0013456788999999988776543 4689
Q ss_pred EEEcCCCceE---EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 225 AIALNGQNIQ---VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 225 ~~dl~~g~~~---~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
++++.+++.. .+..........+|+|||+.|+.... ...|+++|+. +++. ...+.... ..+.
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------dg~v~~~d~~-~~~~--~~~~~~~~----~~i~ 187 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS--------DGNIAVWDLH-NQTL--VRQFQGHT----DGAS 187 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET--------TSCEEEEETT-TTEE--EEEECCCS----SCEE
T ss_pred EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC--------CCcEEEEeCC-CCce--eeeeeccc----CceE
Confidence 9999887632 23334455677899999998887662 2349999988 5654 44455444 5567
Q ss_pred CceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEE
Q 004816 302 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 381 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly 381 (729)
.+.|+|||++++.... .+ .|.++|+.+++...............|++ +++.++ ....++. |+
T Consensus 188 ~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~v~~~~~s~------------~~~~l~-~~~~~~~--i~ 249 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGL-DN--TVRSWDLREGRQLQQHDFTSQIFSLGYCP------------TGEWLA-VGMESSN--VE 249 (337)
T ss_dssp EEEECTTSSEEEEEET-TS--EEEEEETTTTEEEEEEECSSCEEEEEECT------------TSSEEE-EEETTSC--EE
T ss_pred EEEECCCCCEEEEEec-CC--cEEEEECCCCceEeeecCCCceEEEEECC------------CCCEEE-EEcCCCc--EE
Confidence 8899999994444443 33 57778888887655543333333333432 555554 4445564 55
Q ss_pred EEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 382 ILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 382 ~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.+++.+++...+......+..+ ..+++.+++..+.. ..++.+++.+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~~~~~~~~ 299 (337)
T 1gxr_A 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD---NLLNAWRTPYGAS 299 (337)
T ss_dssp EEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCCE
T ss_pred EEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCC---CcEEEEECCCCeE
Confidence 5678888877776666677777 44455555555543 4688888877764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-10 Score=119.31 Aligned_cols=159 Identities=11% Similarity=0.006 Sum_probs=99.2
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
+.++++...++.|+++|+.+ ++.. .+.... ......++|+|||++++++... ...|+++|+++++.
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~---~~~~~~~~~s~dg~~~~v~~~~--------~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNH--------YGDIYGIDLDTCKN 77 (349)
T ss_dssp CEEEEEEETTTEEEEEETTT--TEEEEEEECSS---CCSSCEEEECTTSSEEEEEETT--------TTEEEEEETTTTEE
T ss_pred CEEEEEeCCCCeEEEEECCC--CcEEEEEecCC---CCCCceeEECCCCCEEEEEeCC--------CCcEEEEeCCCCcE
Confidence 35666666788999999987 5443 333221 0124677899999976666432 25799999998876
Q ss_pred EEeeeCCC-------eeeeeeeCCCCCeEEEEEecC--CCCCC--CCcEEEEEEecCCCCeee-eEEecCCCCCcccccc
Q 004816 234 QVLVSGSD-------FYAFPRMDPRGERMAWIEWHH--PNMPW--DKAELWVGYISENGDVYK-RVCVAGFDPTIVESPT 301 (729)
Q Consensus 234 ~~lt~~~~-------~~~~~~~SPDG~~la~~~~~~--~~~~~--~~~~l~~~d~~~~g~~~~-~~~~~~~~~~~~~~~~ 301 (729)
........ ......|||||++|++...+. ....+ ....|+++|++ +++... ....... ..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~-----~~~~ 151 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGLEAKPVRTFPMP-----RQVY 151 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGGGBCCSEEEECC-----SSCC
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECC-CccccceeeeccCC-----Cccc
Confidence 54433211 135679999999998877330 00000 13579999998 554322 2233222 3345
Q ss_pred CceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 302 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
.+.|+|||++ |.... .|+++|+++++.....
T Consensus 152 ~~~~s~dg~l-~~~~~-----~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 152 LMRAADDGSL-YVAGP-----DIYKMDVKTGKYTVAL 182 (349)
T ss_dssp CEEECTTSCE-EEESS-----SEEEECTTTCCEEEEE
T ss_pred ceeECCCCcE-EEccC-----cEEEEeCCCCceeccc
Confidence 6779999994 44322 2899999888765544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-10 Score=117.56 Aligned_cols=243 Identities=8% Similarity=0.039 Sum_probs=143.0
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l 167 (729)
-.++|.|+| ++.+||++.. .+ .|++++..+ ++.+.+ ..+ .....+.++.+ .+++.. ...|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~---~~--~i~~~d~~~-~~~~~~-~~~---------~~~~~i~~~~dG~l~v~~--~~~l 75 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIP---AK--KVCRWDSFT-KQVQRV-TMD---------APVSSVALRQSGGYVATI--GTKF 75 (297)
T ss_dssp BEEEEEEETTTTEEEEEETT---TT--EEEEEETTT-CCEEEE-ECS---------SCEEEEEEBTTSSEEEEE--TTEE
T ss_pred cccCCeEECCCCEEEEEECC---CC--EEEEEECCC-CcEEEE-eCC---------CceEEEEECCCCCEEEEE--CCeE
Confidence 458999999 8999999863 23 467777662 222222 111 01223444432 344443 4579
Q ss_pred EEEeCCCCCCCCeecCCCC-CCCceeeecceecCCCCEEEEEEeccCC--CCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 168 YKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQ--DALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~~~~--~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
+++++++ ++.+.+.... +....+.++.+++|||+.++........ ........||+++.+ ++...+..+....+
T Consensus 76 ~~~d~~~--g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pn 152 (297)
T 3g4e_A 76 CALNWKE--QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISN 152 (297)
T ss_dssp EEEETTT--TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEE
T ss_pred EEEECCC--CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeecccccc
Confidence 9999987 6666554321 1123667899999999954433332110 000123679999986 55655655555667
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec-CCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 323 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~ 323 (729)
+.+|||||+.|+++... ...|++++++ .+|.+.+.+.+.... ........+++++||+|++.... ...
T Consensus 153 gi~~spdg~~lyv~~~~-------~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~---~~~ 221 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSL-------SYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYN---GGR 221 (297)
T ss_dssp EEEECTTSCEEEEEEGG-------GTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEET---TTE
T ss_pred ceEEcCCCCEEEEecCC-------CCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcC---CCE
Confidence 89999999999887732 3459999884 367665444443221 00034456789999976555433 246
Q ss_pred EEEEEcCCCeEEEeeccC-ccccCCcccccCcceeee-eecCCCCEEEEEEEECC
Q 004816 324 LHKWIESNNEVLAIYSLD-AEFSRPLWVFGINSYEII-QSHGEKNLIACSYRQNG 376 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~~~-~~~~~~~w~~~~~~~~~l-~~~~~~~~l~~~s~~~g 376 (729)
|+++|+++|+........ ... ..+.|. + +++.||+++...+
T Consensus 222 v~~~d~~tG~~~~~i~~p~~~~---------t~~~f~g~---d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPVDKT---------TSCCFGGK---NYSEMYVTCARDG 264 (297)
T ss_dssp EEEECTTTCCEEEEEECSSSBE---------EEEEEESG---GGCEEEEEEBCTT
T ss_pred EEEEcCCCceEEEEEECCCCCc---------eEEEEeCC---CCCEEEEEcCCcC
Confidence 999999877654433221 111 233443 2 5667777776543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-10 Score=116.85 Aligned_cols=256 Identities=10% Similarity=-0.005 Sum_probs=152.3
Q ss_pred HhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC-CEEEEEE
Q 004816 84 VSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSN 161 (729)
Q Consensus 84 i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~ 161 (729)
+......+++|.|+| |+.+||+.... + .|++++.. + ..+.+.... .....+.++. +.+++..
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~---~--~i~~~~~~-~-~~~~~~~~~---------~~~~~l~~~~dg~l~v~~ 86 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQ---N--RTWAWSDD-G-QLSPEMHPS---------HHQNGHCLNKQGHLIACS 86 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGG---T--EEEEEETT-S-CEEEEESSC---------SSEEEEEECTTCCEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCC---C--EEEEEECC-C-CeEEEECCC---------CCcceeeECCCCcEEEEe
Confidence 333345678999999 77899998633 3 36666666 2 222222111 0112344443 3566665
Q ss_pred CCCCcEEEEeCCCCCCCCeecCCCCCC-CceeeecceecCCCCEEEEEEec-cC--------CCCCCcceEEEEEEcCCC
Q 004816 162 YKDQRLYKHSIDSKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVRED-RR--------QDALNSTTEIVAIALNGQ 231 (729)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~lt~~~~~-~~~~~~~~~~SPdG~~l~~~~~~-~~--------~~~~~~~~~l~~~dl~~g 231 (729)
...+.|+++++.+ ++.+.+...... ......+++++|||+. +++... .. .........||+++.+ +
T Consensus 87 ~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (296)
T 3e5z_A 87 HGLRRLERQREPG--GEWESIADSFEGKKLNSPNDVCLAPDGSL-WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G 162 (296)
T ss_dssp TTTTEEEEECSTT--CCEEEEECEETTEECCCCCCEEECTTSCE-EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred cCCCeEEEEcCCC--CcEEEEeeccCCCCCCCCCCEEECCCCCE-EEECCccccccccccccccccCCCcEEEEECCC-C
Confidence 5567899999976 666655432110 1123467899999984 343210 00 0000112579999988 7
Q ss_pred ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe-eeeEEecCCCCCccccccCceeCCCCc
Q 004816 232 NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 232 ~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~-~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
+.+.+........+.+|||||+.| ++... ...|++++++.+|++ .....+.... ..+..+++++||+
T Consensus 163 ~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~-------~~~i~~~~~~~~g~~~~~~~~~~~~~----~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 163 TLSAPIRDRVKPNGLAFLPSGNLL-VSDTG-------DNATHRYCLNARGETEYQGVHFTVEP----GKTDGLRVDAGGL 230 (296)
T ss_dssp CEEEEECCCSSEEEEEECTTSCEE-EEETT-------TTEEEEEEECSSSCEEEEEEEECCSS----SCCCSEEEBTTSC
T ss_pred CEEEeecCCCCCccEEECCCCCEE-EEeCC-------CCeEEEEEECCCCcCcCCCeEeeCCC----CCCCeEEECCCCC
Confidence 777776666666789999999988 66522 346999998644665 4444442222 4556789999998
Q ss_pred EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 311 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 311 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
|++.. . ..|+++++++.....+..... .. .+.|.. .+++.|++++. + .||+++++++.+
T Consensus 231 l~v~~-~----~~v~~~~~~g~~~~~~~~~~~-~~---------~~~f~~--~d~~~L~v~t~-~---~l~~~~~~~~~~ 289 (296)
T 3e5z_A 231 IWASA-G----DGVHVLTPDGDELGRVLTPQT-TS---------NLCFGG--PEGRTLYMTVS-T---EFWSIETNVRGL 289 (296)
T ss_dssp EEEEE-T----TEEEEECTTSCEEEEEECSSC-CC---------EEEEES--TTSCEEEEEET-T---EEEEEECSCCBC
T ss_pred EEEEc-C----CeEEEECCCCCEEEEEECCCC-ce---------eEEEEC--CCCCEEEEEcC-C---eEEEEEcccccc
Confidence 66555 3 358899998655555542221 21 233321 05566666653 2 699999988776
Q ss_pred Ee
Q 004816 391 SL 392 (729)
Q Consensus 391 ~~ 392 (729)
+.
T Consensus 290 ~~ 291 (296)
T 3e5z_A 290 EH 291 (296)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-09 Score=112.40 Aligned_cols=287 Identities=10% Similarity=0.043 Sum_probs=167.0
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCC
Q 004816 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (729)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~ 165 (729)
...+..+.|+| ++.++.-. .++...+|....+ +....+.. +.....+..++.+ ..+++...++
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~---~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~dg 96 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCS----KDSSASVWYSLNG---ERLGTLDG--------HTGTIWSIDVDCFTKYCVTGSADY 96 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEE----SSSCEEEEETTTC---CEEEEECC--------CSSCEEEEEECTTSSEEEEEETTT
T ss_pred eceEEEEEEcCCCCEEEEEe----CCCEEEEEeCCCc---hhhhhhhh--------cCCcEEEEEEcCCCCEEEEEeCCC
Confidence 34567899999 65554432 3567777765433 32222211 1112334444432 3455556688
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce------------
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI------------ 233 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~------------ 233 (729)
.|.+||+.+ ++....... ...+....|+|+|+.++....+.... ...|.++++.++..
T Consensus 97 ~i~iwd~~~--~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 97 SIKLWDVSN--GQCVATWKS----PVPVKRVEFSPCGNYFLAILDNVMKN----PGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EEEEEETTT--CCEEEEEEC----SSCEEEEEECTTSSEEEEEECCBTTB----CCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred eEEEEECCC--CcEEEEeec----CCCeEEEEEccCCCEEEEecCCccCC----CCEEEEEEecCCccceeeccccccee
Confidence 999999987 544333323 34567889999999988876642111 14577777765421
Q ss_pred EEeeeCCC--eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCC-CCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 234 QVLVSGSD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 234 ~~lt~~~~--~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~-g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
..+..... .....+|+|||+.|+... ....|+++|+. + +.. ...+.... ..+..+.|+|||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~-~~~~~--~~~~~~~~----~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGH--------KDGKISKYDVS-NNYEY--VDSIDLHE----KSISDMQFSPDLT 231 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEE--------TTSEEEEEETT-TTTEE--EEEEECCS----SCEEEEEECTTSS
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEc--------CCCEEEEEECC-CCcEe--EEEEecCC----CceeEEEECCCCC
Confidence 22222122 566789999999888765 23459999998 4 333 44444444 5667889999999
Q ss_pred EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC-----------CeEE
Q 004816 311 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-----------GRSY 379 (729)
Q Consensus 311 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~-----------g~~~ 379 (729)
+++.... .+ .|.++|..+++...............|.+ +++.++...... +...
T Consensus 232 ~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~~ 296 (369)
T 3zwl_B 232 YFITSSR-DT--NSFLVDVSTLQVLKKYETDCPLNTAVITP------------LKEFIILGGGQEAKDVTTTSANEGKFE 296 (369)
T ss_dssp EEEEEET-TS--EEEEEETTTCCEEEEEECSSCEEEEEECS------------SSSEEEEEECCC-------------CE
T ss_pred EEEEecC-Cc--eEEEEECCCCceeeeecCCCCceeEEecC------------CCceEEEeecCCCceEEEEecCCCcce
Confidence 4444443 23 57778888877665554333333344443 455444443322 2236
Q ss_pred EEEEECCCCceE-eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 380 LGILDDFGHSLS-LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 380 ly~~d~~~g~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+..++..+++.. .+......+..+ ..+++.+++.++.. ..+.+++++.+.
T Consensus 297 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~v~iw~~~~~~ 348 (369)
T 3zwl_B 297 ARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED---GFIRLHHFEKSY 348 (369)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT---SEEEEEEECHHH
T ss_pred eEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC---CeEEEEECcccc
Confidence 777787776644 444455667777 44455566655543 356666666553
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-09 Score=109.39 Aligned_cols=269 Identities=9% Similarity=0.011 Sum_probs=157.9
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCC
Q 004816 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (729)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~ 165 (729)
...+..+.|+| ++.++... ++...+|..... +....+.. ....-+........++++ ..++....++
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-----dg~i~iw~~~~~--~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 119 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-----KGCVKVWDISHP--GNKSPVSQ----LDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-----BSEEEEEETTST--TCCSCSEE----EECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred CCceEEEEEecCCcEEEEcC-----CCeEEEEECCCC--Cceeeeec----ccccCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 34567899999 66555432 467778876544 11111110 000001112333444433 3444555678
Q ss_pred cEEEEeCCCCCCCCe---ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-eCCC
Q 004816 166 RLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-SGSD 241 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~~~~ 241 (729)
.|.+|++.+ ++.. .+... ...+....|+|+|+.|+....+ ..|+++|+.+++..... ....
T Consensus 120 ~i~~~d~~~--~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~~~~~~~~~~ 184 (337)
T 1gxr_A 120 TLSIWDLAA--PTPRIKAELTSS----APACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTLVRQFQGHTD 184 (337)
T ss_dssp EEEEEECCC--C--EEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECCCSS
T ss_pred cEEEEECCC--CCcceeeecccC----CCceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCceeeeeecccC
Confidence 899999987 5422 22222 2346778999999987766543 45899999887665443 3445
Q ss_pred eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCc
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF 321 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~ 321 (729)
......|+|||+.|+... ....|+++|+. +++. ..... .. ..+..+.|+|||++++.... .+
T Consensus 185 ~i~~~~~~~~~~~l~~~~--------~dg~i~~~d~~-~~~~--~~~~~-~~----~~v~~~~~s~~~~~l~~~~~-~~- 246 (337)
T 1gxr_A 185 GASCIDISNDGTKLWTGG--------LDNTVRSWDLR-EGRQ--LQQHD-FT----SQIFSLGYCPTGEWLAVGME-SS- 246 (337)
T ss_dssp CEEEEEECTTSSEEEEEE--------TTSEEEEEETT-TTEE--EEEEE-CS----SCEEEEEECTTSSEEEEEET-TS-
T ss_pred ceEEEEECCCCCEEEEEe--------cCCcEEEEECC-CCce--Eeeec-CC----CceEEEEECCCCCEEEEEcC-CC-
Confidence 667889999999888766 23459999998 5654 22232 22 44567899999994444433 23
Q ss_pred eEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceE
Q 004816 322 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID 401 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~ 401 (729)
.|.++|..+++...+......+....|.+ +++ ++++...+|...+ +++.+++..........+.
T Consensus 247 -~i~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~-~l~~~~~dg~i~~--~~~~~~~~~~~~~~~~~v~ 310 (337)
T 1gxr_A 247 -NVEVLHVNKPDKYQLHLHESCVLSLKFAY------------CGK-WFVSTGKDNLLNA--WRTPYGASIFQSKESSSVL 310 (337)
T ss_dssp -CEEEEETTSSCEEEECCCSSCEEEEEECT------------TSS-EEEEEETTSEEEE--EETTTCCEEEEEECSSCEE
T ss_pred -cEEEEECCCCCeEEEcCCccceeEEEECC------------CCC-EEEEecCCCcEEE--EECCCCeEEEEecCCCcEE
Confidence 47777888887666554433333334443 555 4455556675555 4777776654444455566
Q ss_pred Ee-eeeCCEEEEEEeC
Q 004816 402 NI-TLGNDCLFVEGAS 416 (729)
Q Consensus 402 ~~-~~~~~~~~~~~~~ 416 (729)
.+ ..+++.+++.++.
T Consensus 311 ~~~~s~~~~~l~~~~~ 326 (337)
T 1gxr_A 311 SCDISVDDKYIVTGSG 326 (337)
T ss_dssp EEEECTTSCEEEEEET
T ss_pred EEEECCCCCEEEEecC
Confidence 66 4444555555543
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=136.77 Aligned_cols=215 Identities=19% Similarity=0.152 Sum_probs=127.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cchhhhHHH-hhCCcEEEEecCCCC-CCCchhHHHhhccCCC
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYW-TSRGWAFVDVNYGGS-TGYGREFRERLLGRWG 548 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~l-a~~G~~v~~~d~rGs-~g~g~~~~~~~~~~~~ 548 (729)
+...+|.|.+.. ..++.|+||++|||++..... .+....... ...|++|+.+|||.+ -|++........+ .+
T Consensus 86 l~l~v~~P~~~~----~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~~~-~~ 160 (522)
T 1ukc_A 86 LFINVFKPSTAT----SQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNG-DL 160 (522)
T ss_dssp CEEEEEEETTCC----TTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSS-CT
T ss_pred CEEEEEECCCCC----CCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhccccC-CC
Confidence 445667776521 245689999999987543322 233221111 256999999999942 2433322111111 12
Q ss_pred cccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEEEEeccccChhHHhhhcchhhhh
Q 004816 549 IVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F----RDTFKAGASLYGVADLSMLRAETHKFESR 620 (729)
Q Consensus 549 ~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~----~~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 620 (729)
...+.|+.++++|+.++ ...|++||.|+|+|+||+++..++. . ..+|+++|+.+|.................
T Consensus 161 n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~~ 240 (522)
T 1ukc_A 161 NAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQFER 240 (522)
T ss_dssp THHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSGGGHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCHHHHHHHHHH
Confidence 23489999999999875 2468999999999999998876665 2 67899999999875422111111111112
Q ss_pred hhhhhcCC-----hhhhhhcCc---------ccccCCCCCC--EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 621 YIDNLVGS-----EKDYYEKSP---------INFVDKFSCP--IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 621 ~~~~~~~~-----~~~~~~~sp---------~~~~~~i~~P--vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
+...+--. .+.++..++ +........| .+.++...|..+.+++..++.+.-+..++++-+-...
T Consensus 241 ~~~~~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~~~~vp~l~G~~~ 320 (522)
T 1ukc_A 241 FVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKVPVLVGDDT 320 (522)
T ss_dssp HHHHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSCCCCEEEEEET
T ss_pred HHHHcCCCCHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCcccCCCHHHHHhcCCCCCCCEEEEeec
Confidence 22111000 111121111 1111112233 4556677787777777777777766667788888899
Q ss_pred CCCcccC
Q 004816 685 GEQHGFR 691 (729)
Q Consensus 685 ~~gH~~~ 691 (729)
+|||.|.
T Consensus 321 ~Eg~~f~ 327 (522)
T 1ukc_A 321 DEGSNFA 327 (522)
T ss_dssp BGGGGTS
T ss_pred chhHHhh
Confidence 9999875
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.2e-11 Score=116.78 Aligned_cols=209 Identities=11% Similarity=0.044 Sum_probs=129.3
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCc--EEEEecCCCCCC--C-chh--HHHhh-----ccC--CCc--ccHHHH
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGW--AFVDVNYGGSTG--Y-GRE--FRERL-----LGR--WGI--VDVNDC 555 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~--~v~~~d~rGs~g--~-g~~--~~~~~-----~~~--~~~--~~~~D~ 555 (729)
.+.||++||.. .....|..+++.|.+.|| .|+.+|.++.|. + |.- ..... ..+ -+. ...+++
T Consensus 6 ~~pvvliHG~~--~~~~~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l 83 (249)
T 3fle_A 6 TTATLFLHGYG--GSERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWI 83 (249)
T ss_dssp CEEEEEECCTT--CCGGGTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHH
T ss_pred CCcEEEECCCC--CChhHHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHH
Confidence 35688899973 345667789999999997 588888765432 0 110 00000 000 011 125678
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CC-----CcceEEEEeccccChhHHhhhcchhhhhhhhh--hcC
Q 004816 556 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR-----DTFKAGASLYGVADLSMLRAETHKFESRYIDN--LVG 627 (729)
Q Consensus 556 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~-----~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~--~~~ 627 (729)
..+++++.++.. .+++.++||||||.+++.++. +| ++++.+|++++..+........... ..+... +..
T Consensus 84 ~~~i~~l~~~~~--~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~-~~~~~~g~p~~ 160 (249)
T 3fle_A 84 KEVLSQLKSQFG--IQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNE-IIVDKQGKPSR 160 (249)
T ss_dssp HHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSSCTTT-SCBCTTCCBSS
T ss_pred HHHHHHHHHHhC--CCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccCCcch-hhhcccCCCcc
Confidence 888888887743 468999999999999999987 65 3799999998765432111100000 000000 000
Q ss_pred ChhhhhhcC-cccccCCCCCCEEEEEeC------CCCCCChHHHHHHHHHHHhCCCCEEEEEECC--CCcccCCcccHHH
Q 004816 628 SEKDYYEKS-PINFVDKFSCPIILFQGL------EDKVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKAENIKF 698 (729)
Q Consensus 628 ~~~~~~~~s-p~~~~~~i~~PvL~i~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~~~~~~ 698 (729)
....|...- -...+.+.++|+|.|+|. .|..||...++.+...++......+.++++| +.|.... ++ .+
T Consensus 161 ~~~~~~~l~~~~~~~p~~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~~~~y~e~~v~g~~a~Hs~l~-~n-~~ 238 (249)
T 3fle_A 161 MNAAYRQLLSLYKIYCGKEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKGAKAQHSQLH-EN-KD 238 (249)
T ss_dssp CCHHHHHTGGGHHHHTTTTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTCSSEEEEEEEESGGGSTGGGG-GC-HH
T ss_pred cCHHHHHHHHHHhhCCccCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhhCCCceEEEEEeCCCCchhccc-cC-HH
Confidence 011222210 012233357899999998 6999999999988888887777777777866 7897543 23 47
Q ss_pred HHHHHHHHH
Q 004816 699 TLEQQMVFF 707 (729)
Q Consensus 699 ~~~~~~~fl 707 (729)
..+.+.+||
T Consensus 239 V~~~I~~FL 247 (249)
T 3fle_A 239 VANEIIQFL 247 (249)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777788886
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-09 Score=114.41 Aligned_cols=243 Identities=11% Similarity=-0.018 Sum_probs=145.3
Q ss_pred cCCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 145 YGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
.++.+..++++..+++...++.|.+||+.+ ++.. .+..........+...+|||||++|+....+ ..|
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~--~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d---------~~i 151 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDE--NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD---------ICI 151 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECT--TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccC--CCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC---------CeE
Confidence 345566777665555666788999999987 4432 2111000012456788999999987766543 358
Q ss_pred EEEEcCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccC
Q 004816 224 VAIALNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 302 (729)
Q Consensus 224 ~~~dl~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 302 (729)
.++|+.+++...... .........|+|||+.++.....+ ..|.++|+. +++. ...+...... ..+..
T Consensus 152 ~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D-------~~v~iwd~~-~~~~--~~~~~~~~~~--~~~~~ 219 (344)
T 4gqb_B 152 KVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED-------NRILLWDTR-CPKP--ASQIGCSAPG--YLPTS 219 (344)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETT-------SCEEEEETT-SSSC--EEECC----C--CCEEE
T ss_pred EEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccc-------ccccccccc-ccce--eeeeecceee--cccee
Confidence 899999887654433 345667789999998765554222 348899998 6654 2222211101 33456
Q ss_pred ceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 303 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 303 ~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
+.|+|++. ++..... .+ .|.++|+.+++.. .+......+. .+.|.| ++..++++...++..+|
T Consensus 220 ~~~~p~~~~~l~sg~~-dg--~v~~wd~~~~~~~~~~~~h~~~v~---------~v~fsp---~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 220 LAWHPQQSEVFVFGDE-NG--TVSLVDTKSTSCVLSSAVHSQCVT---------GLVFSP---HSVPFLASLSEDCSLAV 284 (344)
T ss_dssp EEECSSCTTEEEEEET-TS--EEEEEESCC--CCEEEECCSSCEE---------EEEECS---SSSCCEEEEETTSCEEE
T ss_pred eeecCCCCcceEEecc-CC--cEEEEECCCCcEEEEEcCCCCCEE---------EEEEcc---CCCeEEEEEeCCCeEEE
Confidence 88999766 6665544 34 4666788776543 3332222222 334443 66667777777887666
Q ss_pred EEEECCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 381 GILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 381 y~~d~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
| |..+++...+......|..+ ++++..+++.++.+. .+...++.+
T Consensus 285 w--d~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~---~v~~w~v~~ 331 (344)
T 4gqb_B 285 L--DSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH---QVVHHVVPT 331 (344)
T ss_dssp E--CTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS---CEEEEECCC
T ss_pred E--ECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC---eEEEEECCC
Confidence 5 78888877766666678777 345555665555432 344444443
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-10 Score=123.01 Aligned_cols=227 Identities=15% Similarity=0.029 Sum_probs=134.2
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh------CCcEEEEecCCCC
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS------RGWAFVDVNYGGS 532 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~------~G~~v~~~d~rGs 532 (729)
.++.+.. +|..|++....+.+ ...|.||++||.+++. ..|...+..|++ .||.|+++|++|.
T Consensus 86 ~~~~~~i--~g~~i~~~~~~~~~--------~~~~pllllHG~~~s~--~~~~~~~~~L~~~~~~~~~gf~vv~~DlpG~ 153 (408)
T 3g02_A 86 PQFTTEI--EGLTIHFAALFSER--------EDAVPIALLHGWPGSF--VEFYPILQLFREEYTPETLPFHLVVPSLPGY 153 (408)
T ss_dssp CEEEEEE--TTEEEEEEEECCSC--------TTCEEEEEECCSSCCG--GGGHHHHHHHHHHCCTTTCCEEEEEECCTTS
T ss_pred CCEEEEE--CCEEEEEEEecCCC--------CCCCeEEEECCCCCcH--HHHHHHHHHHhcccccccCceEEEEECCCCC
Confidence 3444444 79999988776533 2346799999986654 446667777877 5999999999976
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC-cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh---
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK-RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL--- 607 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~-ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~--- 607 (729)
|.+.... ... ....+++...+..+++.. ..+ ++.++|||+||.+++.++. +|+++...+...+....
T Consensus 154 G~S~~~~---~~~---~~~~~~~a~~~~~l~~~l--g~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~~~~~~~ 225 (408)
T 3g02_A 154 TFSSGPP---LDK---DFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNMSAPPEG 225 (408)
T ss_dssp TTSCCSC---SSS---CCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCCCTTC
T ss_pred CCCCCCC---CCC---CCCHHHHHHHHHHHHHHh--CCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCCCCCccc
Confidence 6543321 011 123566666666555552 334 8999999999999999998 87655555544332211
Q ss_pred ------h--H---------Hhhhcchhh------h---------------hhhhh-h--cCC-----h------------
Q 004816 608 ------S--M---------LRAETHKFE------S---------------RYIDN-L--VGS-----E------------ 629 (729)
Q Consensus 608 ------~--~---------~~~~~~~~~------~---------------~~~~~-~--~~~-----~------------ 629 (729)
. . +......+. . .++.. + +.+ .
T Consensus 226 ~~~~~l~~~e~~~~~~~~~~~~~~~~y~~~~~t~p~tl~~~l~dsP~gl~awi~ek~~~w~d~~~~~d~ll~~v~~y~~t 305 (408)
T 3g02_A 226 PSIESLSAAEKEGIARMEKFMTDGYAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLT 305 (408)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHHSCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHHHhCcchhhhhcCcHHHHHHHHhcChHHHHhhhhhhhhhccCCCCCHHHHHHHHHHHHhh
Confidence 0 0 000000000 0 00000 0 000 0
Q ss_pred -------hhhhhcCc---c-------cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC
Q 004816 630 -------KDYYEKSP---I-------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692 (729)
Q Consensus 630 -------~~~~~~sp---~-------~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 692 (729)
..|.+... . ..+.++++|+++++|.+|...++. .+.+.. ..-+.+.+++++||.. .
T Consensus 306 ~~~~~s~~~y~e~~~~~~~~~~~~~~~~l~~i~vPt~v~~~~~D~~~~p~---~~~~~~---~~~~~~~~~~~gGHf~-~ 378 (408)
T 3g02_A 306 ESFPRAIHTYREWVPTASAPNGATPYQKELYIHKPFGFSFFPKDLVPVPR---SWIATT---GNLVFFRDHAEGGHFA-A 378 (408)
T ss_dssp THHHHHGGGHHHHTTC-------CTTTTTTCEEEEEEEEECTBSSSCCCH---HHHGGG---EEEEEEEECSSCBSCH-H
T ss_pred ccchhHHHHHHhhcccccccccccccccCCCcCCCEEEEeCCcccccCcH---HHHHhc---CCeeEEEECCCCcCch-h
Confidence 01111100 0 023567899999999999776664 233332 1236788999999954 4
Q ss_pred cccHHHHHHHHHHHHHHHhC
Q 004816 693 AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 693 ~~~~~~~~~~~~~fl~~~l~ 712 (729)
-+....+.+.+.+||.+.-.
T Consensus 379 lE~Pe~~~~~l~~fl~~~~~ 398 (408)
T 3g02_A 379 LERPRELKTDLTAFVEQVWQ 398 (408)
T ss_dssp HHCHHHHHHHHHHHHHHHC-
T ss_pred hhCHHHHHHHHHHHHHHHHH
Confidence 46777889999999987643
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-10 Score=114.02 Aligned_cols=197 Identities=11% Similarity=0.075 Sum_probs=121.2
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCC---cEEEEecCCCCCC--CchhHH----Hhh----ccC--CC----cccHHH
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRG---WAFVDVNYGGSTG--YGREFR----ERL----LGR--WG----IVDVND 554 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G---~~v~~~d~rGs~g--~g~~~~----~~~----~~~--~~----~~~~~D 554 (729)
.||++||.. .....|..++..|++.| +.|+.+|+++.|. +...+. ... ..+ -+ ....++
T Consensus 6 pvv~iHG~~--~~~~~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a~~ 83 (250)
T 3lp5_A 6 PVIMVPGSS--ASQNRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAVW 83 (250)
T ss_dssp CEEEECCCG--GGHHHHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHHHH
T ss_pred CEEEECCCC--CCHHHHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHHHH
Confidence 477799973 34456778889998876 6777776654331 000000 000 000 01 012577
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-----CCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCC
Q 004816 555 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-----RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 628 (729)
Q Consensus 555 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-----~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 628 (729)
+..++++|.++.. .+++.++||||||.+++.++. + +++++.+|++.+..+....... .....|
T Consensus 84 l~~~~~~l~~~~~--~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~~~--~~~~~~------- 152 (250)
T 3lp5_A 84 LNTAFKALVKTYH--FNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTSTT--AKTSMF------- 152 (250)
T ss_dssp HHHHHHHHHTTSC--CSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCCSS--CCCHHH-------
T ss_pred HHHHHHHHHHHcC--CCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCccccccc--ccCHHH-------
Confidence 8888898887743 478999999999999998886 5 6789999999876553321100 000000
Q ss_pred hhhhhhcCcccccCCCCCCEEEEEeC----CCCCCChHHHHHHHHHHHhCCCCEEEEEEC--CCCcccCCcccHHHHHHH
Q 004816 629 EKDYYEKSPINFVDKFSCPIILFQGL----EDKVVPPDQARKIYKALKENGLPVALVEYE--GEQHGFRKAENIKFTLEQ 702 (729)
Q Consensus 629 ~~~~~~~sp~~~~~~i~~PvL~i~G~----~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~--~~gH~~~~~~~~~~~~~~ 702 (729)
..+... ...+.+ ++|+|+|+|+ .|.+||.+.+..+...++........+.+. +++|.... ++. ++.+.
T Consensus 153 -~~l~~~--~~~lp~-~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H~~l~-e~~-~v~~~ 226 (250)
T 3lp5_A 153 -KELYRY--RTGLPE-SLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQDQVKHFTEITVTGANTAHSDLP-QNK-QIVSL 226 (250)
T ss_dssp -HHHHHT--GGGSCT-TCEEEEEECCCCCCTTTBCCHHHHTTHHHHHTTTSSEEEEEECTTTTBSSCCHH-HHH-HHHHH
T ss_pred -HHHHhc--cccCCC-CceEEEEEecCCCCCCceeeHHHHHHHHHHhcccccceEEEEEeCCCCchhcch-hCH-HHHHH
Confidence 111111 111222 6899999999 999999999988888877544444555555 46697532 332 66667
Q ss_pred HHHHHHH
Q 004816 703 QMVFFAR 709 (729)
Q Consensus 703 ~~~fl~~ 709 (729)
+.+||.+
T Consensus 227 I~~FL~~ 233 (250)
T 3lp5_A 227 IRQYLLA 233 (250)
T ss_dssp HHHHTSC
T ss_pred HHHHHhc
Confidence 7777644
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-11 Score=120.81 Aligned_cols=198 Identities=10% Similarity=-0.010 Sum_probs=109.4
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHH-HHHHhCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCA-TFLVGSGKAD 569 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d 569 (729)
..|.||++||++++. ..|..+.. | ..+|.|+++|++|.+. +.. . ...++++.+.+ +.+.... .
T Consensus 20 ~~~~lv~lhg~~~~~--~~~~~~~~-l-~~~~~v~~~d~~G~~~-~~~----~-----~~~~~~~~~~~~~~i~~~~--~ 83 (265)
T 3ils_A 20 ARKTLFMLPDGGGSA--FSYASLPR-L-KSDTAVVGLNCPYARD-PEN----M-----NCTHGAMIESFCNEIRRRQ--P 83 (265)
T ss_dssp SSEEEEEECCTTCCG--GGGTTSCC-C-SSSEEEEEEECTTTTC-GGG----C-----CCCHHHHHHHHHHHHHHHC--S
T ss_pred CCCEEEEECCCCCCH--HHHHHHHh-c-CCCCEEEEEECCCCCC-CCC----C-----CCCHHHHHHHHHHHHHHhC--C
Confidence 457899999985443 44555566 4 6789999999998421 111 0 11233333222 2222221 2
Q ss_pred CCcEEEEEcChHHHHHHHHHh----CCCcceEEEEeccccChh---------HHhhhcchhhh--------------hhh
Q 004816 570 EKRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADLS---------MLRAETHKFES--------------RYI 622 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~~~d~~---------~~~~~~~~~~~--------------~~~ 622 (729)
.+++.++|||+||.+|+.++. ++++++++|+.++..... .+......... .+.
T Consensus 84 ~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (265)
T 3ils_A 84 RGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAMEQLPRAFYEHCNSIGLFATQPGASPDGSTEPPSYLI 163 (265)
T ss_dssp SCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCSSCCCCCCCHHHHHHHHHTTTTTTSSSSCSSSCSCCCTTHH
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCCCCcccccCHHHHHHHHHHHHhCCCccccccCCHHHHHHHH
Confidence 358999999999999988874 678899999887643210 00000000000 000
Q ss_pred hhhcCChhhhhhcCcccccCCCCCCEE-EEEeCC---CCCCC--------------hHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 623 DNLVGSEKDYYEKSPINFVDKFSCPII-LFQGLE---DKVVP--------------PDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 623 ~~~~~~~~~~~~~sp~~~~~~i~~PvL-~i~G~~---D~~vp--------------~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
..+..+......+.+ ....++++|++ +++|++ |..++ ......+.+.+. +.++++++++
T Consensus 164 ~~~~~~~~~~~~~~~-~~~~~i~~P~~lii~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~i~ 240 (265)
T 3ils_A 164 PHFTAVVDVMLDYKL-APLHARRMPKVGIVWAADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTIMP--GASFDIVRAD 240 (265)
T ss_dssp HHHHHHHHHTTTCCC-CCCCCSSCCEEEEEEEEECSSCTTTSCCCSSCCTTTSCCCCCSCTTHHHHST--TCCEEEEEEE
T ss_pred HHHHHHHHHHHhcCC-CCCccCCCCeEEEEEccCCCCccccCccccCcchhhccccccCcchHHHhCC--ccceeEEEcC
Confidence 000000000111111 12346889977 999999 98873 332333333221 1378999999
Q ss_pred CCCcccCC-cccHHHHHHHHHHHH
Q 004816 685 GEQHGFRK-AENIKFTLEQQMVFF 707 (729)
Q Consensus 685 ~~gH~~~~-~~~~~~~~~~~~~fl 707 (729)
|+||.+.. .+...+..+.+.+||
T Consensus 241 gagH~~~~~~e~~~~v~~~i~~fL 264 (265)
T 3ils_A 241 GANHFTLMQKEHVSIISDLIDRVM 264 (265)
T ss_dssp EEETTGGGSTTTTHHHHHHHHHHT
T ss_pred CCCcceeeChhhHHHHHHHHHHHh
Confidence 99997641 355556666666664
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.4e-10 Score=116.84 Aligned_cols=243 Identities=10% Similarity=-0.044 Sum_probs=138.1
Q ss_pred cCCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCC-CCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 145 YGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~-~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
.+..+.+++++.-++....++.|.+||+.+ ++...+... .......+...+|+|||++|+....+ ..|
T Consensus 95 ~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d---------g~v 163 (357)
T 4g56_B 95 AGVTDVAWVSEKGILVASDSGAVELWEILE--KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD---------FSV 163 (357)
T ss_dssp SCEEEEEEETTTEEEEEETTSCEEEC----------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT---------SCE
T ss_pred CCEEEEEEcCCCCEEEEECCCEEEEeeccc--cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC---------CeE
Confidence 344556666553334455678899999986 433221110 00012446788999999987766543 358
Q ss_pred EEEEcCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccC
Q 004816 224 VAIALNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 302 (729)
Q Consensus 224 ~~~dl~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 302 (729)
.++|+.+++...... ........+|+||++.++.....+ ..|.++|+. +++........... ..+..
T Consensus 164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~d-------g~v~~wd~~-~~~~~~~~~~~~~~----~~v~~ 231 (357)
T 4g56_B 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGED-------GRILLWDTR-KPKPATRIDFCASD----TIPTS 231 (357)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETT-------SCEEECCTT-SSSCBCBCCCTTCC----SCEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccC-------CceEEEECC-CCceeeeeeecccc----ccccc
Confidence 889999887654433 345567789999997654444222 348888987 56532222222222 44567
Q ss_pred ceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 303 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 303 ~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
+.|+|++. ++..... .+ .|.++|+.+++..... .....+. .+.|.+ +++.++++...++..+|
T Consensus 232 v~~sp~~~~~la~g~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~---------~l~~sp---~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 232 VTWHPEKDDTFACGDE-TG--NVSLVNIKNPDSAQTSAVHSQNIT---------GLAYSY---HSSPFLASISEDCTVAV 296 (357)
T ss_dssp EEECTTSTTEEEEEES-SS--CEEEEESSCGGGCEEECCCSSCEE---------EEEECS---SSSCCEEEEETTSCEEE
T ss_pred hhhhhcccceEEEeec-cc--ceeEEECCCCcEeEEEeccceeEE---------EEEEcC---CCCCEEEEEeCCCEEEE
Confidence 89999976 6666544 33 4666788776543322 2222222 234433 66667777777786666
Q ss_pred EEEECCCCceEeeccCCcceEEe-ee-eCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 381 GILDDFGHSLSLLDIPFTDIDNI-TL-GNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 381 y~~d~~~g~~~~lt~~~~~v~~~-~~-~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
| |+++++..........|..+ .. .++.+++.++.+ ..+.++++..
T Consensus 297 w--d~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~D---g~v~iW~~~~ 343 (357)
T 4g56_B 297 L--DADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWD---HKVLHHHLPS 343 (357)
T ss_dssp E--CTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETT---SCEEEEECC-
T ss_pred E--ECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCC---CeEEEEECCC
Confidence 5 77888766555555667777 33 355566655543 3455666544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=113.14 Aligned_cols=221 Identities=11% Similarity=0.077 Sum_probs=129.9
Q ss_pred HHHHhccC-CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEE-CCEE
Q 004816 81 ADVVSGAS-KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-GDTV 157 (729)
Q Consensus 81 ~e~i~~~~-~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~i 157 (729)
+|.+.... ...++|.|+| ++.+||++... + .|++++..+ ++.+.+.. + .....+.++ ++.+
T Consensus 40 ~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~---~--~i~~~d~~~-~~~~~~~~-~---------~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 40 GRVLDETPMLLGEGPTFDPASGTAWWFNILE---R--ELHELHLAS-GRKTVHAL-P---------FMGSALAKISDSKQ 103 (326)
T ss_dssp CEEEECSCCSBEEEEEEETTTTEEEEEEGGG---T--EEEEEETTT-TEEEEEEC-S---------SCEEEEEEEETTEE
T ss_pred eEEeeccCCCCCcCCeEeCCCCEEEEEECCC---C--EEEEEECCC-CcEEEEEC-C---------CcceEEEEeCCCeE
Confidence 45555542 3458999999 89999998642 3 467776652 23222211 1 012223333 3345
Q ss_pred EEEECCCCcEEEEeCCCCCCCCeecCCCC-CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
++.. ...|+++++++ ++.+.+.... +....+..++.++|||+.++....... ......||+++ +++.+.+
T Consensus 104 ~v~~--~~gl~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~---~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 104 LIAS--DDGLFLRDTAT--GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA---ETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp EEEE--TTEEEEEETTT--CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC---CTTCEEEEEEE--TTEEEEE
T ss_pred EEEE--CCCEEEEECCC--CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC---CCCceEEEEEe--CCcEEEe
Confidence 5544 34599999987 7766664321 112356788999999995433322111 11236799999 4777766
Q ss_pred eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec-CCC-CeeeeEEecCCC-CCccccccCceeCCCCcEEE
Q 004816 237 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENG-DVYKRVCVAGFD-PTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 237 t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~-~~g-~~~~~~~~~~~~-~~~~~~~~~~~wspDG~l~~ 313 (729)
..+.....+++|||||+.|++.... ...|++++++ .+| ++.....+.... .. .....+.+++||.+++
T Consensus 175 ~~~~~~~~~i~~s~dg~~lyv~~~~-------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~--~~p~gi~~d~~G~lwv 245 (326)
T 2ghs_A 175 FADISIPNSICFSPDGTTGYFVDTK-------VNRLMRVPLDARTGLPTGKAEVFIDSTGIK--GGMDGSVCDAEGHIWN 245 (326)
T ss_dssp EEEESSEEEEEECTTSCEEEEEETT-------TCEEEEEEBCTTTCCBSSCCEEEEECTTSS--SEEEEEEECTTSCEEE
T ss_pred eCCCcccCCeEEcCCCCEEEEEECC-------CCEEEEEEcccccCCcccCceEEEECCCCC--CCCCeeEECCCCCEEE
Confidence 5544456688999999999887632 2469999985 245 433222222111 01 3345678899997655
Q ss_pred EEecCCCceEEEEEEcCCCeEEEee
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
.... ...|+++|+++...+.+.
T Consensus 246 a~~~---~~~v~~~d~~g~~~~~i~ 267 (326)
T 2ghs_A 246 ARWG---EGAVDRYDTDGNHIARYE 267 (326)
T ss_dssp EEET---TTEEEEECTTCCEEEEEE
T ss_pred EEeC---CCEEEEECCCCCEEEEEE
Confidence 4432 246899998554444443
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-08 Score=114.47 Aligned_cols=223 Identities=13% Similarity=0.093 Sum_probs=142.2
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
..+++...++.|.+|++.+ .....+... ...+...+|+|||+.|+....+ ..|.+++..+.....
T Consensus 316 ~~l~t~~~d~~i~~w~~~~--~~~~~~~~~----~~~v~~~~~s~~g~~l~~~~~d---------g~v~~~~~~~~~~~~ 380 (577)
T 2ymu_A 316 QTIASASDDKTVKLWNRNG--QHLQTLTGH----SSSVWGVAFSPDGQTIASASDD---------KTVKLWNRNGQLLQT 380 (577)
T ss_dssp SEEEEEETTSCEEEEETTS--CEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEETTCCEEEE
T ss_pred CEEEEEeCCCeEEEEeCCC--CeeEEEeCC----CCCEEEEEECCCCCEEEEEeCC---------CEEEEEcCCCCEEEE
Confidence 3444555677899999886 666666554 3456778899999988766543 357788876655556
Q ss_pred eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEE
Q 004816 236 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 315 (729)
Q Consensus 236 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~ 315 (729)
+..........+|||||++|+..+. ...|.++|.. ++. ...+.+.. ..+..++|+||++++...
T Consensus 381 ~~~~~~~v~~~~~s~dg~~l~~~~~--------d~~v~~~~~~--~~~--~~~~~~~~----~~v~~~~~s~d~~~l~~~ 444 (577)
T 2ymu_A 381 LTGHSSSVRGVAFSPDGQTIASASD--------DKTVKLWNRN--GQL--LQTLTGHS----SSVWGVAFSPDDQTIASA 444 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEET--------TSEEEEECTT--CCE--EEEEECCS----SCEEEEEECTTSSEEEEE
T ss_pred ecCCCCCeEEEEECCCCCEEEEEeC--------CCEEEEEeCC--CCE--EEEecCCC----CCeEEEEECCCCCEEEEE
Confidence 6655566778899999999987662 2458888854 443 34445554 556678999999944444
Q ss_pred ecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeecc
Q 004816 316 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 316 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~ 395 (729)
.. .+ .|.++|..+.....+......+.. +.|.+ +++ ++++...++...|| +.++...+.+..
T Consensus 445 ~~-d~--~v~~w~~~~~~~~~~~~~~~~v~~---------~~~sp---d~~-~las~~~d~~i~iw--~~~~~~~~~~~~ 506 (577)
T 2ymu_A 445 SD-DK--TVKLWNRNGQLLQTLTGHSSSVRG---------VAFSP---DGQ-TIASASDDKTVKLW--NRNGQLLQTLTG 506 (577)
T ss_dssp ET-TS--EEEEEETTSCEEEEEECCSSCEEE---------EEECT---TSC-EEEEEETTSEEEEE--ETTSCEEEEEEC
T ss_pred cC-CC--EEEEEECCCCEEEEEcCCCCCEEE---------EEEcC---CCC-EEEEEeCCCEEEEE--cCCCCEEEEEeC
Confidence 33 34 455667766555555544333333 33432 544 55566667766665 666666777776
Q ss_pred CCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 396 PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 396 ~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
....|..+ ..+++++++.++.. ..+.++|..+
T Consensus 507 h~~~v~~l~~s~dg~~l~s~~~d---g~v~lwd~~~ 539 (577)
T 2ymu_A 507 HSSSVRGVAFSPDGQTIASASDD---KTVKLWNRNG 539 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETT---SEEEEECTTS
T ss_pred CCCCEEEEEEcCCCCEEEEEECc---CEEEEEeCCC
Confidence 66778777 44555566555533 3577777543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-09 Score=111.76 Aligned_cols=256 Identities=11% Similarity=0.014 Sum_probs=146.9
Q ss_pred HHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC-CEEE
Q 004816 81 ADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVI 158 (729)
Q Consensus 81 ~e~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 158 (729)
+|.|.......++|.|+| |+.++|++.. +++ |++++.+ |+.+.+.... + ....+.++. +.++
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~---~~~--i~~~~~~--g~~~~~~~~~-~--------~~~gl~~d~dG~l~ 100 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLV---GRR--VLGWRED--GTVDVLLDAT-A--------FTNGNAVDAQQRLV 100 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETT---TTE--EEEEETT--SCEEEEEESC-S--------CEEEEEECTTSCEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECC---CCE--EEEEeCC--CCEEEEeCCC-C--------ccceeeECCCCCEE
Confidence 455555555668999999 8889999863 344 5555554 2333222111 0 112233442 3555
Q ss_pred EEECCCCcEEEEeCCCCCCCCeecCCCCCC-CceeeecceecCCCCEEEEEEeccC---------CCCCCcceEEEEEEc
Q 004816 159 FSNYKDQRLYKHSIDSKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVREDRR---------QDALNSTTEIVAIAL 228 (729)
Q Consensus 159 ~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~-~~~~~~~~~~SPdG~~l~~~~~~~~---------~~~~~~~~~l~~~dl 228 (729)
+.....+.|++++.+ ++.+.+...... .....++++++|||+ |+++..... .........||+++.
T Consensus 101 v~~~~~~~v~~~~~~---g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD---GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp EEETTTTEEEEECTT---SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred EEECCCCEEEEECCC---CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 555555689999986 445555432110 012346789999998 344311000 001112367999999
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
++++.+.+. +.....+++|||||+.|++...... +.....|++++++ ++.+.....+.... . .....+.+++|
T Consensus 177 ~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~--~~~~~~i~~~~~~-~~~l~~~~~~~~~~-~--~~pdgi~~d~~ 249 (305)
T 3dr2_A 177 DGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQ--GHGSVEITAFAWR-DGALHDRRHFASVP-D--GLPDGFCVDRG 249 (305)
T ss_dssp SSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC-----CCCEEEEEEEE-TTEEEEEEEEECCS-S--SCCCSEEECTT
T ss_pred CCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCc--CCCCCEEEEEEec-CCCccCCeEEEECC-C--CCCCeEEECCC
Confidence 888888776 5455678899999999987764321 0013569999998 44344344443321 1 44567889999
Q ss_pred CcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 309 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 309 G~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
|+|++.. . . .|+++++++.....+.... .. ..+.|.+ +++.|++++. + .||++++
T Consensus 250 G~lwv~~-~-~---gv~~~~~~g~~~~~~~~~~-~~---------~~~~f~~---d~~~L~it~~-~---~l~~~~~ 304 (305)
T 3dr2_A 250 GWLWSSS-G-T---GVCVFDSDGQLLGHIPTPG-TA---------SNCTFDQ---AQQRLFITGG-P---CLWMLPL 304 (305)
T ss_dssp SCEEECC-S-S---EEEEECTTSCEEEEEECSS-CC---------CEEEECT---TSCEEEEEET-T---EEEEEEC
T ss_pred CCEEEec-C-C---cEEEECCCCCEEEEEECCC-ce---------eEEEEeC---CCCEEEEEcC-C---eEEEEEC
Confidence 9855443 3 2 4999999766555554221 11 2334432 6667776653 2 5777654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-08 Score=108.46 Aligned_cols=199 Identities=10% Similarity=-0.023 Sum_probs=121.0
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
....+|||||+.++...... ...|.++|+.+++..............+|||||++|+..+ + ..+
T Consensus 136 ~~~v~fSpDg~~la~as~~~-------d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~--------~~~ 199 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKV-------PAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-G--------SSL 199 (365)
T ss_dssp EEEEEECTTSSCEEEEESCS-------SCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-S--------SCE
T ss_pred EEEEEEcCCCCEEEEEECCC-------CCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc-c--------eeE
Confidence 34578999999887655332 1468999999987765555555677899999999998765 2 126
Q ss_pred EEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEe-----eccCccccC
Q 004816 273 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI-----YSLDAEFSR 346 (729)
Q Consensus 273 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l-----~~~~~~~~~ 346 (729)
.+++.. ++............ ..+..++|+|||+ ++..+........++.++...+....+ ......+
T Consensus 200 ~~~~~~-~~~~~~~~~~~~~~----~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V-- 272 (365)
T 4h5i_A 200 EVISTV-TGSCIARKTDFDKN----WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI-- 272 (365)
T ss_dssp EEEETT-TCCEEEEECCCCTT----EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE--
T ss_pred EEEEec-cCcceeeeecCCCC----CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe--
Confidence 677766 55532222223333 4567789999999 555554423344677777766554322 2222122
Q ss_pred CcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-ee-ccCCcceEEe-eeeCCEEEEEEeCCCCCceE
Q 004816 347 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LL-DIPFTDIDNI-TLGNDCLFVEGASGVEPSSV 423 (729)
Q Consensus 347 ~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~l-t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~l 423 (729)
..+.|.| +++ ++++...++...|| |+.+++.. .+ ......|..+ ..+++.+++.++.+. .+
T Consensus 273 -------~~~~~Sp---dg~-~lasgs~D~~V~iw--d~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~---tv 336 (365)
T 4h5i_A 273 -------TSMDVDM---KGE-LAVLASNDNSIALV--KLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN---TI 336 (365)
T ss_dssp -------EEEEECT---TSC-EEEEEETTSCEEEE--ETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS---EE
T ss_pred -------EeEEECC---CCC-ceEEEcCCCEEEEE--ECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC---eE
Confidence 2344443 554 55566667765555 77777643 33 3446678888 556666766666443 44
Q ss_pred EEEEcCC
Q 004816 424 AKVTLDD 430 (729)
Q Consensus 424 y~~d~~~ 430 (729)
.++++..
T Consensus 337 rvw~ip~ 343 (365)
T 4h5i_A 337 HIIKLPL 343 (365)
T ss_dssp EEEECCT
T ss_pred EEEEcCC
Confidence 5555543
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=99.14 E-value=8.7e-11 Score=116.49 Aligned_cols=196 Identities=13% Similarity=0.144 Sum_probs=108.0
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC-C
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA-D 569 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~-d 569 (729)
..|.||++||.+++ ...|...+..|.+ +|.|+++|+||.|.+... ..+|+.+.++.+.+.-.+ .
T Consensus 12 ~~~~lv~lhg~g~~--~~~~~~~~~~L~~-~~~vi~~Dl~GhG~S~~~------------~~~~~~~~~~~~~~~l~~~~ 76 (242)
T 2k2q_B 12 EKTQLICFPFAGGY--SASFRPLHAFLQG-ECEMLAAEPPGHGTNQTS------------AIEDLEELTDLYKQELNLRP 76 (242)
T ss_dssp CCCEEESSCCCCHH--HHHHHHHHHHHCC-SCCCEEEECCSSCCSCCC------------TTTHHHHHHHHTTTTCCCCC
T ss_pred CCceEEEECCCCCC--HHHHHHHHHhCCC-CeEEEEEeCCCCCCCCCC------------CcCCHHHHHHHHHHHHHhhc
Confidence 34678999997433 3456777777754 799999999976643211 145777777776654222 2
Q ss_pred CCcEEEEEcChHHHHHHHHHh-------CCCcceEEEEeccccCh--------hHHhhhcch---hhhh------hhhhh
Q 004816 570 EKRLCITGGSAGGYTTLAALA-------FRDTFKAGASLYGVADL--------SMLRAETHK---FESR------YIDNL 625 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-------~~~~~~a~v~~~~~~d~--------~~~~~~~~~---~~~~------~~~~~ 625 (729)
.+++.++||||||.+|+.++. +|+++-......+.... ..+...... .... .....
T Consensus 77 ~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (242)
T 2k2q_B 77 DRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKEVMSFF 156 (242)
T ss_dssp CSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSEEEEEEECSCCCSCCCSSCTTHHHHHTTCCTTCCCCTTTHHHHTTTTC
T ss_pred CCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEEEEECCCCCCCCcccccCCCHHHHHHHHHHhCCCChHHhcCHHHHHHH
Confidence 368999999999999998875 45553111111111100 000000000 0000 00000
Q ss_pred cCC-hhhhhh---cCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHH
Q 004816 626 VGS-EKDYYE---KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLE 701 (729)
Q Consensus 626 ~~~-~~~~~~---~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~ 701 (729)
... ...+.. ... ..+.++++|+|+++|++|..++ .... .+++.-...+++++++ ||.+. .+...++.+
T Consensus 157 ~~~~~~~~~~~~~~~~-~~l~~i~~P~lvi~G~~D~~~~-~~~~----~~~~~~~~~~~~~~~~-gH~~~-~e~p~~~~~ 228 (242)
T 2k2q_B 157 LPSFRSDYRALEQFEL-YDLAQIQSPVHVFNGLDDKKCI-RDAE----GWKKWAKDITFHQFDG-GHMFL-LSQTEEVAE 228 (242)
T ss_dssp CSCHHHHHHHHTCCCC-SCCTTCCCSEEEEEECSSCCHH-HHHH----HHHTTCCCSEEEEEEC-CCSHH-HHHCHHHHH
T ss_pred HHHHHHHHHHHHhccc-CCCCccCCCEEEEeeCCCCcCH-HHHH----HHHHHhcCCeEEEEeC-CceeE-cCCHHHHHH
Confidence 000 011111 111 1256789999999999998753 2232 2333222335778875 89653 344567778
Q ss_pred HHHHHHHH
Q 004816 702 QQMVFFAR 709 (729)
Q Consensus 702 ~~~~fl~~ 709 (729)
.+.+|+.+
T Consensus 229 ~i~~fl~~ 236 (242)
T 2k2q_B 229 RIFAILNQ 236 (242)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhc
Confidence 88888865
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-08 Score=115.36 Aligned_cols=211 Identities=13% Similarity=0.094 Sum_probs=133.7
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
.+.....++.|.+++..+ .....+... ...+...+|||||++|+....+ ..|.+++..+...+.+
T Consensus 358 ~l~~~~~dg~v~~~~~~~--~~~~~~~~~----~~~v~~~~~s~dg~~l~~~~~d---------~~v~~~~~~~~~~~~~ 422 (577)
T 2ymu_A 358 TIASASDDKTVKLWNRNG--QLLQTLTGH----SSSVRGVAFSPDGQTIASASDD---------KTVKLWNRNGQLLQTL 422 (577)
T ss_dssp EEEEEETTSEEEEEETTC--CEEEEEECC----SSCEEEEEECTTSSCEEEEETT---------SEEEEECTTCCEEEEE
T ss_pred EEEEEeCCCEEEEEcCCC--CEEEEecCC----CCCeEEEEECCCCCEEEEEeCC---------CEEEEEeCCCCEEEEe
Confidence 344445677899999765 545555544 3456778999999988766543 3588888765555566
Q ss_pred eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEe
Q 004816 237 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 237 t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~ 316 (729)
..........+||||+++|+..+. ...|.++|+. ++. ...+.+.. ..+..++|+|||+++....
T Consensus 423 ~~~~~~v~~~~~s~d~~~l~~~~~--------d~~v~~w~~~--~~~--~~~~~~~~----~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 423 TGHSSSVWGVAFSPDDQTIASASD--------DKTVKLWNRN--GQL--LQTLTGHS----SSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEET--------TSEEEEEETT--SCE--EEEEECCS----SCEEEEEECTTSCEEEEEE
T ss_pred cCCCCCeEEEEECCCCCEEEEEcC--------CCEEEEEECC--CCE--EEEEcCCC----CCEEEEEEcCCCCEEEEEe
Confidence 555566778899999999987662 3458888865 443 33444554 5567789999999555544
Q ss_pred cCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 317 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 317 ~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
. .+ .|.++|..+...+.+......+.. +.|.+ +++ ++++...+|...|| |..+..+..+...
T Consensus 487 ~-d~--~i~iw~~~~~~~~~~~~h~~~v~~---------l~~s~---dg~-~l~s~~~dg~v~lw--d~~~~~~~~~~~h 548 (577)
T 2ymu_A 487 D-DK--TVKLWNRNGQLLQTLTGHSSSVRG---------VAFSP---DGQ-TIASASDDKTVKLW--NRNGQLLQTLTGH 548 (577)
T ss_dssp T-TS--EEEEEETTSCEEEEEECCSSCEEE---------EEECT---TSS-CEEEEETTSEEEEE--CTTSCEEEEEECC
T ss_pred C-CC--EEEEEcCCCCEEEEEeCCCCCEEE---------EEEcC---CCC-EEEEEECcCEEEEE--eCCCCEEEEEcCC
Confidence 4 34 455667655555555433333333 34442 555 45566677766665 6666666667666
Q ss_pred CcceEEe-eeeCCEEEEEEeC
Q 004816 397 FTDIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 397 ~~~v~~~-~~~~~~~~~~~~~ 416 (729)
...|..+ ..+++++++.++.
T Consensus 549 ~~~v~~~~fs~dg~~l~s~~~ 569 (577)
T 2ymu_A 549 SSSVWGVAFSPDGQTIASASS 569 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEET
T ss_pred CCCEEEEEEcCCCCEEEEEeC
Confidence 6677777 4445555555553
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-08 Score=109.34 Aligned_cols=279 Identities=11% Similarity=0.066 Sum_probs=160.4
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEEE
Q 004816 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170 (729)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 170 (729)
..+.|+| ++.++.... ++...+|..... +....+... ... ....+.++++. +++...++.|.+|
T Consensus 60 ~~~~~s~~g~~l~~~~~----d~~v~i~d~~~~---~~~~~~~~~-~~~------~~~~~~~~~~~-l~~~~~dg~i~iw 124 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARL----DGHDFLFNTIIR---DGSKMLKRA-DYT------AVDTAKLQMRR-FILGTTEGDIKVL 124 (420)
T ss_dssp TTCEEEEEETTEEEEEE----TTEEEEEECCSE---ETTTTSCSC-CEE------EEEEECSSSCE-EEEEETTSCEEEE
T ss_pred cceeeeecCCeEEEEEc----CCcEEEEEeccc---ceeeEEecC-Cce------EEEEEecCCCE-EEEEECCCCEEEE
Confidence 4789999 888877653 466666765332 222222111 000 01122223334 4455567889999
Q ss_pred eCCCCCCCCeecC-CCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeCCCeeeeeee
Q 004816 171 SIDSKDSSPLPIT-PDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSGSDFYAFPRM 248 (729)
Q Consensus 171 d~~~~~~~~~~lt-~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~~~~~~~~~~ 248 (729)
++.+ ++...+. .. ...+...+|+|||+.|+....+ ..|.++|+.+++. +.+..........+|
T Consensus 125 d~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~d---------~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 125 DSNF--NLQREIDQAH----VSEITKLKFFPSGEALISSSQD---------MQLKIWSVKDGSNPRTLIGHRATVTDIAI 189 (420)
T ss_dssp CTTS--CEEEEETTSS----SSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred eCCC--cceeeecccc----cCccEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence 9987 6554443 33 3567888999999987766543 4699999988764 445445566778999
Q ss_pred CCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC-C-Cc------------------cccccCceeCCC
Q 004816 249 DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-P-TI------------------VESPTEPKWSSK 308 (729)
Q Consensus 249 SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~-~-~~------------------~~~~~~~~wspD 308 (729)
+|||+.|+..+. ...|.++|+. +++. ...+.... . .. ...+..+.|+||
T Consensus 190 ~~~~~~l~s~~~--------d~~v~iwd~~-~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (420)
T 3vl1_A 190 IDRGRNVLSASL--------DGTIRLWECG-TGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY 258 (420)
T ss_dssp ETTTTEEEEEET--------TSCEEEEETT-TTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred cCCCCEEEEEcC--------CCcEEEeECC-CCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence 999999886662 2348888887 5653 22222110 0 00 033456889999
Q ss_pred CcEEEEEecCCCceEEEEEEcCCCeEEEee-c-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 309 GELFFVTDRKNGFWNLHKWIESNNEVLAIY-S-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 309 G~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
|++++.... .| .|.++|+.+++..... . ....+.. +.|.+ +++.++++...+|...|| |+.
T Consensus 259 ~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~---------~~~~~---~~~~~l~~g~~dg~i~vw--d~~ 321 (420)
T 3vl1_A 259 GKYVIAGHV-SG--VITVHNVFSKEQTIQLPSKFTCSCNS---------LTVDG---NNANYIYAGYENGMLAQW--DLR 321 (420)
T ss_dssp TEEEEEEET-TS--CEEEEETTTCCEEEEECCTTSSCEEE---------EEECS---SCTTEEEEEETTSEEEEE--ETT
T ss_pred CCEEEEEcC-CC--eEEEEECCCCceeEEcccccCCCcee---------EEEeC---CCCCEEEEEeCCCeEEEE--EcC
Confidence 995555444 34 3666788776544333 1 1222222 33432 555466677777765555 666
Q ss_pred CCc--eEeecc-CCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 387 GHS--LSLLDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 387 ~g~--~~~lt~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
+++ ...+.. ....+..+...++.+++.++. + ..+.++++...
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~-d--~~v~iw~~~~~ 366 (420)
T 3vl1_A 322 SPECPVGEFLINEGTPINNVYFAAGALFVSSGF-D--TSIKLDIISDP 366 (420)
T ss_dssp CTTSCSEEEEESTTSCEEEEEEETTEEEEEETT-T--EEEEEEEECCT
T ss_pred CCcCchhhhhccCCCCceEEEeCCCCEEEEecC-C--ccEEEEeccCC
Confidence 653 345544 344566664445565555442 2 35666665553
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-09 Score=111.97 Aligned_cols=167 Identities=7% Similarity=-0.057 Sum_probs=89.8
Q ss_pred EEECCEEEEEECCCCcEEEEeCC-CCCCCCeecCCCCCCCceeeecceecCCCCEE-EEEEeccCCCCC-C----cceEE
Q 004816 151 RIFGDTVIFSNYKDQRLYKHSID-SKDSSPLPITPDYGEPLVSYADGIFDPRFNRY-VTVREDRRQDAL-N----STTEI 223 (729)
Q Consensus 151 ~~~~~~i~~~~~~~~~l~~~d~~-~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l-~~~~~~~~~~~~-~----~~~~l 223 (729)
+++++.++..+. + .|.+++++ + ++..++..... ......++|||||++| +++.+....... . ....+
T Consensus 48 spdg~~l~~~~~-~-~v~~~~~~~~--g~~~~~~~~~~--~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 48 DHERKNIYGAAM-K-KWSSFAVKSP--TEIVHEASHPI--GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp CTTSSEEEEEEB-T-EEEEEEEEET--TEEEEEEEEEC--CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred CCCCCEEEEEcc-c-eEEEEEECCC--CCEEEeeEeec--CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence 333445544443 3 78888886 5 55444322100 0113557899999974 445430000000 0 01345
Q ss_pred EEEEcC-CCceE-Eeee----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec--CCCCC
Q 004816 224 VAIALN-GQNIQ-VLVS----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA--GFDPT 295 (729)
Q Consensus 224 ~~~dl~-~g~~~-~lt~----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~--~~~~~ 295 (729)
.+++++ .|+.. .+.. ......+++|||||++|+.... ....|++++++.+|+........ ...
T Consensus 122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~-------~~~~v~~~~~~~~g~~~~~~~~~~~~~g-- 192 (365)
T 1jof_A 122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL-------TANKLWTHRKLASGEVELVGSVDAPDPG-- 192 (365)
T ss_dssp EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-------TTTEEEEEEECTTSCEEEEEEEECSSTT--
T ss_pred EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC-------CCCEEEEEEECCCCCEEEeeeEecCCCC--
Confidence 666665 35443 2321 3345667899999998865542 12469999986335543322222 112
Q ss_pred ccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeE
Q 004816 296 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 296 ~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
..+..+.|+|||+.+|+.....+.-.+|.++.++|+.
T Consensus 193 --~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 193 --DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp --CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred --CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 3456679999999444444324556677777767764
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.5e-10 Score=113.00 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=67.8
Q ss_pred EEEEEcCCCCCCcc-ccchhhhHHHhhC--CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 494 LLVKSHGGPTSEAR-GILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 494 ~vv~~hGg~~~~~~-~~~~~~~~~la~~--G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
.||++||...+... ..|....+.|.+. ||.|+++|+ |.+....... ... ....+++..+++++...... .
T Consensus 7 pvVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~-G~g~s~~~~~-~~~----~~~~~~~~~~~~~l~~~~~l-~ 79 (279)
T 1ei9_A 7 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEI-GKTLREDVEN-SFF----LNVNSQVTTVCQILAKDPKL-Q 79 (279)
T ss_dssp CEEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCC-SSSHHHHHHH-HHH----SCHHHHHHHHHHHHHSCGGG-T
T ss_pred cEEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEe-CCCCcccccc-ccc----cCHHHHHHHHHHHHHhhhhc-c
Confidence 38899997544322 4677788888775 899999997 5442211111 111 11134445555555442212 2
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCC-cceEEEEecc
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRD-TFKAGASLYG 603 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~-~~~a~v~~~~ 603 (729)
+++.++||||||.++..++. +|+ +++..|+.++
T Consensus 80 ~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 80 QGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp TCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred CCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 68999999999999999998 887 4999998775
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-08 Score=103.91 Aligned_cols=260 Identities=13% Similarity=0.097 Sum_probs=145.0
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCC---
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKD--- 164 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~--- 164 (729)
..++++.|+|.+.+||+... ++ .|++++..+ ++.+.+.... ......+.++.+ .+++....+
T Consensus 45 ~~~~~~~~~~~g~l~~~~~~---~~--~i~~~d~~~-~~~~~~~~~~--------~~~~~~i~~~~dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 45 LQLEGLNFDRQGQLFLLDVF---EG--NIFKINPET-KEIKRPFVSH--------KANPAAIKIHKDGRLFVCYLGDFKS 110 (333)
T ss_dssp CCEEEEEECTTSCEEEEETT---TC--EEEEECTTT-CCEEEEEECS--------SSSEEEEEECTTSCEEEEECTTSSS
T ss_pred ccccCcEECCCCCEEEEECC---CC--EEEEEeCCC-CcEEEEeeCC--------CCCcceEEECCCCcEEEEeCCCCCC
Confidence 45689999995558887652 23 466676652 3444333111 011223444433 555555444
Q ss_pred -CcEEEEeCCCCCCCCeec-CCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCe
Q 004816 165 -QRLYKHSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDF 242 (729)
Q Consensus 165 -~~l~~~d~~~~~~~~~~l-t~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~ 242 (729)
+.|+++++++ +..+.+ .... ......++.++|||+.++....... ......||+++.++++.+.+......
T Consensus 111 ~~~i~~~d~~~--~~~~~~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~ 183 (333)
T 2dg1_A 111 TGGIFAATENG--DNLQDIIEDLS--TAYCIDDMVFDSKGGFYFTDFRGYS---TNPLGGVYYVSPDFRTVTPIIQNISV 183 (333)
T ss_dssp CCEEEEECTTS--CSCEEEECSSS--SCCCEEEEEECTTSCEEEEECCCBT---TBCCEEEEEECTTSCCEEEEEEEESS
T ss_pred CceEEEEeCCC--CEEEEEEccCc--cCCcccceEECCCCCEEEEeccccc---cCCCceEEEEeCCCCEEEEeecCCCc
Confidence 5899999987 665533 3211 1245678899999985433221110 01136799999988888777654445
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC-eeee--EEecCCCCCccccccCceeCCCCcEEEEEecCC
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKR--VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 319 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~-~~~~--~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~ 319 (729)
..+++|+|||+.|++.... ...|+++|++.++. .... ......... ..+..+.+++||++++....
T Consensus 184 ~~~i~~~~dg~~l~v~~~~-------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~l~v~~~~-- 252 (333)
T 2dg1_A 184 ANGIALSTDEKVLWVTETT-------ANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAMYG-- 252 (333)
T ss_dssp EEEEEECTTSSEEEEEEGG-------GTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEEET--
T ss_pred ccceEECCCCCEEEEEeCC-------CCeEEEEEecCCCcCcccccceEEEecCCC--CCCCceEECCCCCEEEEEcC--
Confidence 5678999999988877532 34699999862233 2111 111111100 23456789999986555433
Q ss_pred CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC---CeEEEEEEECCC
Q 004816 320 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN---GRSYLGILDDFG 387 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~---g~~~ly~~d~~~ 387 (729)
...|+++|+++...+.+.......+.. .....+.|.+ +++.||+++... ....||++++..
T Consensus 253 -~~~v~~~d~~g~~~~~~~~~~~~~g~~---~~~~~~~~~~---dg~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 253 -QGRVLVFNKRGYPIGQILIPGRDEGHM---LRSTHPQFIP---GTNQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp -TTEEEEECTTSCEEEEEECTTGGGTCS---CBCCEEEECT---TSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred -CCEEEEECCCCCEEEEEEcCCCccccc---cCcceEEECC---CCCEEEEEeCccCCCCCceEEEEeccc
Confidence 246888898655445443211100000 0112334432 666787777652 346788887653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-09 Score=113.96 Aligned_cols=250 Identities=8% Similarity=0.063 Sum_probs=150.6
Q ss_pred eEEEE--CCEEEEEECCCCcEEEEeCC--CCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 149 AFRIF--GDTVIFSNYKDQRLYKHSID--SKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 149 ~~~~~--~~~i~~~~~~~~~l~~~d~~--~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
+..++ +..++++...++.|.+|++. + +.. +.+.... ....+..++|+|||++|+....+ ..+
T Consensus 107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~~---------g~v 173 (450)
T 2vdu_B 107 NLRLTSDESRLIACADSDKSLLVFDVDKTS--KNVLKLRKRFC--FSKRPNAISIAEDDTTVIIADKF---------GDV 173 (450)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECSSS--SSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEETT---------SEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEECcCCC--Cceeeeeeccc--CCCCceEEEEcCCCCEEEEEeCC---------CcE
Confidence 34444 44566777778889999987 6 433 3333110 02346788999999988766442 568
Q ss_pred EEEEcCCCceE-----EeeeCCCeeeeeeeCCC---CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCC
Q 004816 224 VAIALNGQNIQ-----VLVSGSDFYAFPRMDPR---GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 295 (729)
Q Consensus 224 ~~~dl~~g~~~-----~lt~~~~~~~~~~~SPD---G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~ 295 (729)
+++++.+++.. .+..........+|+|| |++|+..+. ...|+++|+. +++.. .....+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~--------d~~i~vwd~~-~~~~~-~~~~~~h~-- 241 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR--------DEHIKISHYP-QCFIV-DKWLFGHK-- 241 (450)
T ss_dssp EEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET--------TSCEEEEEES-CTTCE-EEECCCCS--
T ss_pred EEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC--------CCcEEEEECC-CCcee-eeeecCCC--
Confidence 99999876543 33334456677899999 888876652 2348999998 66542 22244444
Q ss_pred ccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccC-----------------CcccccCcceee
Q 004816 296 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR-----------------PLWVFGINSYEI 358 (729)
Q Consensus 296 ~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~-----------------~~w~~~~~~~~~ 358 (729)
..+..+.|+ ||++++.... .+ .|.++|+.+++............. .........+.+
T Consensus 242 --~~v~~~~~s-d~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 242 --HFVSSICCG-KDYLLLSAGG-DD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp --SCEEEEEEC-STTEEEEEES-SS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred --CceEEEEEC-CCCEEEEEeC-CC--eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 566788999 9985444443 33 577778888875443321100000 011112234555
Q ss_pred eeecCCCCEEEEEEEECCeEEEEEE-ECCCCceE---eeccCCcceEEeeeeCCEEEEEEeCCCCCc------eEEEEEc
Q 004816 359 IQSHGEKNLIACSYRQNGRSYLGIL-DDFGHSLS---LLDIPFTDIDNITLGNDCLFVEGASGVEPS------SVAKVTL 428 (729)
Q Consensus 359 l~~~~~~~~l~~~s~~~g~~~ly~~-d~~~g~~~---~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~------~ly~~d~ 428 (729)
.+ +++.++..+..++...||.+ +..++.++ .+..+ ..+..+....+.+++...+.+.+. ++|.++.
T Consensus 316 ~~---~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 316 SK---NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CS---SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred eC---CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 53 66666666646787778777 33343333 33333 566777333366777777766554 7899988
Q ss_pred CCCcc
Q 004816 429 DDHKL 433 (729)
Q Consensus 429 ~~~~~ 433 (729)
.+++.
T Consensus 392 ~~~~~ 396 (450)
T 2vdu_B 392 NENSF 396 (450)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 77765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.10 E-value=5.6e-08 Score=99.92 Aligned_cols=269 Identities=11% Similarity=0.051 Sum_probs=154.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
..+..+.|+| ++.++--. .++...+|....+ +....+.. +..+.....++++ ..+++...++.
T Consensus 24 ~~v~~~~~s~~~~~l~s~~----~dg~i~iw~~~~~---~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSS----ADKLIKIWGAYDG---KFEKTISG--------HKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp SCEEEEEECTTSSEEEEEE----TTSCEEEEETTTC---CEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CcEEEEEECCCCCEEEEee----CCCeEEEEeCCCc---ccchhhcc--------CCCceEEEEEcCCCCEEEEECCCCE
Confidence 4567899999 66554432 3567777865433 22222211 1222334444433 45555567889
Q ss_pred EEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeee
Q 004816 167 LYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYA 244 (729)
Q Consensus 167 l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~ 244 (729)
|.+||+.+ ++. ..+... ...+....|+|+|+.|+....+ ..|.++|+.+++.. .+........
T Consensus 89 i~vwd~~~--~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 89 LKIWDVSS--GKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTGKCLKTLPAHSDPVS 153 (312)
T ss_dssp EEEEETTT--CCEEEEEECC----SSCEEEEEECSSSSEEEEEETT---------SCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEEECCC--CcEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCEEEEEecCCCCcEE
Confidence 99999987 543 334333 3446778899999987766543 35889999987654 3444445667
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 324 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l 324 (729)
...|+|||+.|+..+. ...|.++|+. +++.. ..+..... ..+..+.|+|||++++.... .+ .|
T Consensus 154 ~~~~~~~~~~l~~~~~--------d~~i~~wd~~-~~~~~-~~~~~~~~----~~~~~~~~~~~~~~l~~~~~-d~--~i 216 (312)
T 4ery_A 154 AVHFNRDGSLIVSSSY--------DGLCRIWDTA-SGQCL-KTLIDDDN----PPVSFVKFSPNGKYILAATL-DN--TL 216 (312)
T ss_dssp EEEECTTSSEEEEEET--------TSCEEEEETT-TCCEE-EEECCSSC----CCEEEEEECTTSSEEEEEET-TT--EE
T ss_pred EEEEcCCCCEEEEEeC--------CCcEEEEECC-CCcee-eEEeccCC----CceEEEEECCCCCEEEEEcC-CC--eE
Confidence 7899999998876652 2348999988 56542 22222222 34556889999994444443 34 56
Q ss_pred EEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-EeeccCCcceEEe
Q 004816 325 HKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI 403 (729)
Q Consensus 325 ~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~~lt~~~~~v~~~ 403 (729)
.++|..+++.......... ..+.. ...+.. .++.++++...+|...|| ++.+++. +.+......+..+
T Consensus 217 ~iwd~~~~~~~~~~~~~~~---~~~~~---~~~~~~---~~~~~l~sg~~dg~i~vw--d~~~~~~~~~~~~h~~~v~~~ 285 (312)
T 4ery_A 217 KLWDYSKGKCLKTYTGHKN---EKYCI---FANFSV---TGGKWIVSGSEDNLVYIW--NLQTKEIVQKLQGHTDVVIST 285 (312)
T ss_dssp EEEETTTTEEEEEECSSCC---SSSCC---CEEEEC---SSSCEEEECCTTSCEEEE--ETTTCCEEEEECCCSSCEEEE
T ss_pred EEEECCCCcEEEEEEecCC---ceEEE---EEEEEe---CCCcEEEEECCCCEEEEE--ECCCchhhhhhhccCCcEEEE
Confidence 6778888765443321111 11100 011111 344556666666755554 7766664 3454455556666
Q ss_pred -eeeCCEEEEEEe
Q 004816 404 -TLGNDCLFVEGA 415 (729)
Q Consensus 404 -~~~~~~~~~~~~ 415 (729)
..+++.+++.++
T Consensus 286 ~~~p~~~~l~s~~ 298 (312)
T 4ery_A 286 ACHPTENIIASAA 298 (312)
T ss_dssp EECSSSSEEEEEE
T ss_pred eecCcCCceEEEE
Confidence 344444544443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.7e-08 Score=102.54 Aligned_cols=277 Identities=7% Similarity=-0.023 Sum_probs=160.1
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcEEEE
Q 004816 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYKH 170 (729)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~~~ 170 (729)
..+.|+ ++.++-.. .++...+|....+ +...+.... +.....+..++++ ..+++...++.|.+|
T Consensus 97 ~~~~~s-~~~l~~~~----~d~~v~lw~~~~~---~~~~~~~~~-------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 97 NLLDWS-NLNVVAVA----LERNVYVWNADSG---SVSALAETD-------ESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp BCEEEC-TTSEEEEE----ETTEEEEEETTTC---CEEEEEECC-------TTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEeec-CCCEEEEE----CCCeEEEeeCCCC---cEeEeeecC-------CCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 457777 55555443 2566667765433 333332211 1112334444433 344555567899999
Q ss_pred eCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-Cc-eEEeeeCCCeeeeee
Q 004816 171 SIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QN-IQVLVSGSDFYAFPR 247 (729)
Q Consensus 171 d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~-~~~lt~~~~~~~~~~ 247 (729)
++.+ ++ .+.+... ...+....| +++.++....+ ..|.++|+.. +. ...+...........
T Consensus 162 d~~~--~~~~~~~~~~----~~~v~~~~~--~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 224 (401)
T 4aez_A 162 DVES--QTKLRTMAGH----QARVGCLSW--NRHVLSSGSRS---------GAIHHHDVRIANHQIGTLQGHSSEVCGLA 224 (401)
T ss_dssp ETTT--CCEEEEECCC----SSCEEEEEE--ETTEEEEEETT---------SEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred ECcC--CeEEEEecCC----CCceEEEEE--CCCEEEEEcCC---------CCEEEEecccCcceeeEEcCCCCCeeEEE
Confidence 9987 44 3444433 345566677 56665555432 4688999984 33 334444556677889
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEE
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK 326 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~ 326 (729)
|+|||+.|+..+. ...|.++|+. +++. ...+.... ..+..+.|+|+|. ++..... .....|.+
T Consensus 225 ~~~~~~~l~s~~~--------d~~v~iwd~~-~~~~--~~~~~~~~----~~v~~~~~~p~~~~ll~~~~g-s~d~~i~i 288 (401)
T 4aez_A 225 WRSDGLQLASGGN--------DNVVQIWDAR-SSIP--KFTKTNHN----AAVKAVAWCPWQSNLLATGGG-TMDKQIHF 288 (401)
T ss_dssp ECTTSSEEEEEET--------TSCEEEEETT-CSSE--EEEECCCS----SCCCEEEECTTSTTEEEEECC-TTTCEEEE
T ss_pred EcCCCCEEEEEeC--------CCeEEEccCC-CCCc--cEEecCCc----ceEEEEEECCCCCCEEEEecC-CCCCEEEE
Confidence 9999998887662 2349999998 5654 33444444 5677899999988 7766542 12356788
Q ss_pred EEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEE-ECCeEEEEEEECCCCceEe---eccCCcceEE
Q 004816 327 WIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSLSL---LDIPFTDIDN 402 (729)
Q Consensus 327 ~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~-~~g~~~ly~~d~~~g~~~~---lt~~~~~v~~ 402 (729)
+|..+++..........+....|++ +++.++..+. .+|...||-+. +++... +......+..
T Consensus 289 ~d~~~~~~~~~~~~~~~v~~~~~s~------------~~~~l~~~~g~~dg~i~v~~~~--~~~~~~~~~~~~h~~~v~~ 354 (401)
T 4aez_A 289 WNAATGARVNTVDAGSQVTSLIWSP------------HSKEIMSTHGFPDNNLSIWSYS--SSGLTKQVDIPAHDTRVLY 354 (401)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECS------------SSSEEEEEECTTTCEEEEEEEE--TTEEEEEEEEECCSSCCCE
T ss_pred EECCCCCEEEEEeCCCcEEEEEECC------------CCCeEEEEeecCCCcEEEEecC--CccceeEEEecCCCCCEEE
Confidence 8988877655443333333344443 5665555432 56766666554 444332 3344555666
Q ss_pred e-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 403 I-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 403 ~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+ ..+++.+++.++.. ..+..+++.+++.
T Consensus 355 ~~~s~dg~~l~s~~~d---g~i~iw~~~~~~~ 383 (401)
T 4aez_A 355 SALSPDGRILSTAASD---ENLKFWRVYDGDH 383 (401)
T ss_dssp EEECTTSSEEEEECTT---SEEEEEECCC---
T ss_pred EEECCCCCEEEEEeCC---CcEEEEECCCCcc
Confidence 6 44455555555433 4677888877653
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-09 Score=112.63 Aligned_cols=210 Identities=12% Similarity=-0.004 Sum_probs=120.9
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 549 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~ 549 (729)
.+...++.|.... ....+.||++||..++... .|. .+.+.|.++||.|+.+|++|.+.... .
T Consensus 15 ~l~~~i~~p~~~~-----~~~~~~VvllHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~~g~g~~~~---~-------- 77 (317)
T 1tca_A 15 VLDAGLTCQGASP-----SSVSKPILLVPGTGTTGPQ-SFDSNWIPLSTQLGYTPCWISPPPFMLNDT---Q-------- 77 (317)
T ss_dssp HHHHTEEETTBCT-----TSCSSEEEEECCTTCCHHH-HHTTTHHHHHHTTTCEEEEECCTTTTCSCH---H--------
T ss_pred HHhheeeCCCCCC-----CCCCCeEEEECCCCCCcch-hhHHHHHHHHHhCCCEEEEECCCCCCCCcH---H--------
Confidence 3444456565421 2234679999998544321 144 67788889999999999997532111 0
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CC---CcceEEEEeccccChhHHhhhcch---hhhhhh
Q 004816 550 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVADLSMLRAETHK---FESRYI 622 (729)
Q Consensus 550 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~---~~~~a~v~~~~~~d~~~~~~~~~~---~~~~~~ 622 (729)
...+++.+.++++.+.. +.+++.|+|||+||.++..++. ++ ++++++|++++............. ......
T Consensus 78 ~~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~~~~~~~~~~~~~ 155 (317)
T 1tca_A 78 VNTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDALAVSAPSVW 155 (317)
T ss_dssp HHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhhhhhhhhcCchHH
Confidence 12467788888887753 2478999999999999988876 54 789999999986542221110000 000000
Q ss_pred hhhcCCh--hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHH--HHHHHHHHHhCCCCEEEEEE-------CCCCcccC
Q 004816 623 DNLVGSE--KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQ--ARKIYKALKENGLPVALVEY-------EGEQHGFR 691 (729)
Q Consensus 623 ~~~~~~~--~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~--~~~~~~~l~~~g~~~~~~~~-------~~~gH~~~ 691 (729)
....+.. ..+.... .....+|+++++|..|.+|++.. +......+. +. +.+.+ ++.+|...
T Consensus 156 ~~~~~s~f~~~L~~~~----~~~~~vp~~~i~g~~D~iV~p~~~~g~~~~~~l~--~a--~~~~~~~~~~~~~~~gH~~~ 227 (317)
T 1tca_A 156 QQTTGSALTTALRNAG----GLTQIVPTTNLYSATDEIVQPQVSNSPLDSSYLF--NG--KNVQAQAVCGPLFVIDHAGS 227 (317)
T ss_dssp HTBTTCHHHHHHHHTT----TTBCSSCEEEEECTTCSSSCCCCSSSTTSTTCCB--TS--EEEEHHHHHCTTCCCCTTHH
T ss_pred hhCcCcHHHHHHHhcC----CCCCCCCEEEEEeCCCCeECCccccccchhhhcc--CC--ccEEeeeccCCCCccCcccc
Confidence 0000000 1111100 01246899999999999998765 211112221 11 22222 47789632
Q ss_pred CcccHHHHHHHHHHHHHH
Q 004816 692 KAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 692 ~~~~~~~~~~~~~~fl~~ 709 (729)
..+ ...++.+++||+.
T Consensus 228 -l~~-p~~~~~v~~~L~~ 243 (317)
T 1tca_A 228 -LTS-QFSYVVGRSALRS 243 (317)
T ss_dssp -HHB-HHHHHHHHHHHHC
T ss_pred -cCC-HHHHHHHHHHhcC
Confidence 122 2456778888876
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-08 Score=103.16 Aligned_cols=229 Identities=12% Similarity=0.023 Sum_probs=135.6
Q ss_pred ceEEEECC-EEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 148 ~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.+..++.+ ..+++...++.|.+|++.+ ++. ..+... ...+..++|+|||+.|+....+ ..|.+
T Consensus 36 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------g~i~i 100 (369)
T 3zwl_B 36 TQVKYNKEGDLLFSCSKDSSASVWYSLN--GERLGTLDGH----TGTIWSIDVDCFTKYCVTGSAD---------YSIKL 100 (369)
T ss_dssp EEEEECTTSCEEEEEESSSCEEEEETTT--CCEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------TEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeCCC--chhhhhhhhc----CCcEEEEEEcCCCCEEEEEeCC---------CeEEE
Confidence 33444433 4455555678899999987 443 444433 3457888999999988766543 46999
Q ss_pred EEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe-ee--------eEEecCCCCCc
Q 004816 226 IALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YK--------RVCVAGFDPTI 296 (729)
Q Consensus 226 ~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~-~~--------~~~~~~~~~~~ 296 (729)
+|+.+++...............|+|||+.|+....+... ....|.++|+. .+.. .. ..........
T Consensus 101 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~---~~g~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 175 (369)
T 3zwl_B 101 WDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMK---NPGSINIYEIE-RDSATHELTKVSEEPIHKIITHEGL- 175 (369)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTT---BCCEEEEEEEE-ECTTTCCEEEECSSCSEEEECCTTC-
T ss_pred EECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccC---CCCEEEEEEec-CCccceeecccccceeeeccCCcCc-
Confidence 999998876665566667789999999999877633111 23568888887 3321 11 1111122100
Q ss_pred cccccCceeCCCCcEEEEEecCCCceEEEEEEcCC-CeEEE-eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEE
Q 004816 297 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN-NEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 374 (729)
Q Consensus 297 ~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~-g~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~ 374 (729)
..+..+.|+|||++++.... .+ .|.++|+.+ ++... +......+....|.+ +++.| ++...
T Consensus 176 -~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~l-~~~~~ 238 (369)
T 3zwl_B 176 -DAATVAGWSTKGKYIIAGHK-DG--KISKYDVSNNYEYVDSIDLHEKSISDMQFSP------------DLTYF-ITSSR 238 (369)
T ss_dssp -CCEEEEEECGGGCEEEEEET-TS--EEEEEETTTTTEEEEEEECCSSCEEEEEECT------------TSSEE-EEEET
T ss_pred -cceeEEEEcCCCCEEEEEcC-CC--EEEEEECCCCcEeEEEEecCCCceeEEEECC------------CCCEE-EEecC
Confidence 15567889999994444443 33 577778877 44333 322333333333433 55444 45555
Q ss_pred CCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEe
Q 004816 375 NGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGA 415 (729)
Q Consensus 375 ~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~ 415 (729)
++. |.++|+.+++..........+..+ ..+++..++.++
T Consensus 239 d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 239 DTN--SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGG 278 (369)
T ss_dssp TSE--EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred Cce--EEEEECCCCceeeeecCCCCceeEEecCCCceEEEee
Confidence 664 555577777655444444555555 344444444444
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.5e-09 Score=109.70 Aligned_cols=120 Identities=8% Similarity=-0.046 Sum_probs=69.8
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCC--CceeeecceecCCCCEEEEEEeccCCCCCC---cceEE
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGE--PLVSYADGIFDPRFNRYVTVREDRRQDALN---STTEI 223 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~--~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~---~~~~l 223 (729)
++++++.+++....++.|+++|+.+ ++.. .+...... .......++|||||++|++...+....... ....|
T Consensus 50 ~s~dg~~~~v~~~~~~~i~~~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i 127 (349)
T 1jmx_B 50 MAPDNRTAYVLNNHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL 127 (349)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred ECCCCCEEEEEeCCCCcEEEEeCCC--CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeE
Confidence 4444556667766678999999987 5433 33221100 011236778999999988776431000000 02579
Q ss_pred EEEEcCCCceE---EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe
Q 004816 224 VAIALNGQNIQ---VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV 283 (729)
Q Consensus 224 ~~~dl~~g~~~---~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~ 283 (729)
+++|+++++.. ............+|||||+ |++.. .+|+++|+. +++.
T Consensus 128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~----------~~i~~~d~~-~~~~ 178 (349)
T 1jmx_B 128 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG----------PDIYKMDVK-TGKY 178 (349)
T ss_dssp EEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES----------SSEEEECTT-TCCE
T ss_pred EEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc----------CcEEEEeCC-CCce
Confidence 99999885432 2223333445567999999 65432 128888877 5654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-08 Score=105.66 Aligned_cols=242 Identities=6% Similarity=-0.078 Sum_probs=136.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC----CEEEEEECC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG----DTVIFSNYK 163 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~ 163 (729)
..+..+.|+| +..++........++...+|....+ +...+...+ +.....+..+++ +.++++...
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~---~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG---DLKLLREIE-------KAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS---SEEEEEEEE-------ESSCEEEEECTTCCTTTCCEEEEET
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC---cccceeeec-------ccCcEEEEEEcCCCCCCceEEEecC
Confidence 4567899999 7777666543223577777766433 222111100 111223333433 256666667
Q ss_pred CCcEEEEeCCCCCC-CCeecCCCCCCCceeeecc------eecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--eE
Q 004816 164 DQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADG------IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--IQ 234 (729)
Q Consensus 164 ~~~l~~~d~~~~~~-~~~~lt~~~~~~~~~~~~~------~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--~~ 234 (729)
++.|.+|++.++ . ....+... ...+... +|+|||+.|+....+ ..|.++|+.+++ ..
T Consensus 89 dg~i~iwd~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~s~~~~~l~~~~~d---------~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 89 GGNLHIWNLEAP-EMPVYSVKGH----KEIINAIDGIGGLGIGEGAPEIVTGSRD---------GTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TSCEEEECTTSC-SSCSEEECCC----SSCEEEEEEESGGGCC-CCCEEEEEETT---------SCEEEECTTSCSSCSE
T ss_pred CCeEEEEeCCCC-CccEEEEEec----ccceEEEeeccccccCCCccEEEEEeCC---------CeEEEEeCCCCCCcce
Confidence 889999999872 2 34444433 2223333 679999987766543 358889998865 34
Q ss_pred EeeeCCC----eee----eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 235 VLVSGSD----FYA----FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 235 ~lt~~~~----~~~----~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
.+....+ ... .++|+|||+.|+... ....|+++|+. +++. ... .... ..+..+.|+
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--------~d~~i~i~d~~-~~~~--~~~-~~~~----~~v~~~~~~ 218 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY--------DNGDIKLFDLR-NMAL--RWE-TNIK----NGVCSLEFD 218 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE--------TTSEEEEEETT-TTEE--EEE-EECS----SCEEEEEES
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEc--------cCCeEEEEECc-cCce--eee-cCCC----CceEEEEcC
Confidence 4432121 222 334899999888766 23469999998 6654 222 2233 456788999
Q ss_pred C---CCcEEEEEecCCCceEEEEEEcCCCeEEE-e-----eccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 307 S---KGELFFVTDRKNGFWNLHKWIESNNEVLA-I-----YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 307 p---DG~l~~~~~~~~g~~~l~~~d~~~g~~~~-l-----~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
| ++++++.... .+. |.++|+.+++... + ......+. .+.|.+ +++.++++...+|.
T Consensus 219 ~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~---~~~~~l~~~~~dg~ 283 (357)
T 3i2n_A 219 RKDISMNKLVATSL-EGK--FHVFDMRTQHPTKGFASVSEKAHKSTVW---------QVRHLP---QNRELFLTAGGAGG 283 (357)
T ss_dssp CSSSSCCEEEEEES-TTE--EEEEEEEEEETTTEEEEEEEECCSSCEE---------EEEEET---TEEEEEEEEETTSE
T ss_pred CCCCCCCEEEEECC-CCe--EEEEeCcCCCcccceeeeccCCCcCCEE---------EEEECC---CCCcEEEEEeCCCc
Confidence 9 8885444444 454 4455554433211 1 11222222 234442 55547788888898
Q ss_pred EEEEEEEC
Q 004816 378 SYLGILDD 385 (729)
Q Consensus 378 ~~ly~~d~ 385 (729)
..||.+..
T Consensus 284 i~iwd~~~ 291 (357)
T 3i2n_A 284 LHLWKYEY 291 (357)
T ss_dssp EEEEEEEC
T ss_pred EEEeecCC
Confidence 88887764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.06 E-value=8.9e-09 Score=110.30 Aligned_cols=244 Identities=11% Similarity=0.053 Sum_probs=141.4
Q ss_pred CceEEEEC--CEEEEEECCCCcEEEEeCCCCCCC--------CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCC
Q 004816 147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSS--------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDA 216 (729)
Q Consensus 147 ~~~~~~~~--~~i~~~~~~~~~l~~~d~~~~~~~--------~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~ 216 (729)
+.++.++. +.++++...++.|.+|++.+ +. ...+... ...+...+|+|+|+.++++...+
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~--~~~~~~~~~~~~~~~~h----~~~v~~~~~~p~~~~~l~s~~~d---- 153 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPD--GGLVLPLREPVITLEGH----TKRVGIVAWHPTAQNVLLSAGCD---- 153 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEECCT--TCCSSCBCSCSEEEECC----SSCEEEEEECSSBTTEEEEEETT----
T ss_pred EEEEEeCCCCCCEEEEEeCCCeEEEEEccC--CCCccccCCceEEecCC----CCeEEEEEECcCCCCEEEEEcCC----
Confidence 34455543 45667777788999999987 42 2233333 34567889999995444554432
Q ss_pred CCcceEEEEEEcCCCceEEee---eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEe-cCC
Q 004816 217 LNSTTEIVAIALNGQNIQVLV---SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGF 292 (729)
Q Consensus 217 ~~~~~~l~~~dl~~g~~~~lt---~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~-~~~ 292 (729)
..|.++|+.+++..... .........+|+|||+.|+... ....|.++|+. +++. ...+ ...
T Consensus 154 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~iwd~~-~~~~--~~~~~~~~ 218 (402)
T 2aq5_A 154 ----NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC--------RDKRVRVIEPR-KGTV--VAEKDRPH 218 (402)
T ss_dssp ----SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE--------TTSEEEEEETT-TTEE--EEEEECSS
T ss_pred ----CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe--------cCCcEEEEeCC-CCce--eeeeccCC
Confidence 45899999988765433 2445667889999999998776 23469999998 6654 3333 333
Q ss_pred CCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeE-EEee--ccCccccCCcccccCcceeeeeecCCCCEEE
Q 004816 293 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV-LAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLIA 369 (729)
Q Consensus 293 ~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~-~~l~--~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~ 369 (729)
. + ..+..+.|+|||++++..........|.++|+.+++. ..+. .....+....|++ +++.++
T Consensus 219 ~-~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~------------~~~~l~ 283 (402)
T 2aq5_A 219 E-G--TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP------------DTNIVY 283 (402)
T ss_dssp C-S--SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET------------TTTEEE
T ss_pred C-C--CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC------------CCCEEE
Confidence 2 1 2356789999998555542212346788888877543 1111 1222222333333 677776
Q ss_pred EEEEECCeEEEEEEECCCCc--eEeecc--CCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 370 CSYRQNGRSYLGILDDFGHS--LSLLDI--PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 370 ~~s~~~g~~~ly~~d~~~g~--~~~lt~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
++...+|...+|-+ .+++ ...+.. ....+..+ ..+++.+++ + .+ ..+..+++.+++.+.+.
T Consensus 284 ~~g~~dg~i~i~d~--~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~--s-~~--~~~~~~~l~~~~~~~i~ 349 (402)
T 2aq5_A 284 LCGKGDSSIRYFEI--TSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV--N-KC--EIARFYKLHERKCEPIA 349 (402)
T ss_dssp EEETTCSCEEEEEE--CSSTTCEEEEEEECCSSCCSEEEECCGGGSCG--G-GT--EEEEEEEEETTEEEEEE
T ss_pred EEEcCCCeEEEEEe--cCCCcceEeecccccCCcccceEEecccccce--e-cc--eeEEEEEcCCCcEEEEE
Confidence 66656776666655 4444 444433 22445555 233333322 1 11 14455555566655443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=9e-09 Score=107.80 Aligned_cols=241 Identities=8% Similarity=-0.014 Sum_probs=143.9
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~ 168 (729)
.+..+.|+|++.+. +.. .+|...||....+ +....... ...-|...+.+.+++.+ ..+++...++.|.
T Consensus 84 ~v~~~~~s~d~~l~-~~s---~dg~v~lWd~~~~---~~~~~~~~----~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 84 GVADLTWVGERGIL-VAS---DSGAVELWELDEN---ETLIVSKF----CKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152 (344)
T ss_dssp CEEEEEEETTTEEE-EEE---TTSEEEEEEECTT---SSCEEEEE----EEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CEEEEEEeCCCeEE-EEE---CCCEEEEEeccCC---CceeEeec----cccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 35678999744433 332 4678888876543 22111100 00001222334444433 4556666788999
Q ss_pred EEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-eee--CCCeee
Q 004816 169 KHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVS--GSDFYA 244 (729)
Q Consensus 169 ~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~--~~~~~~ 244 (729)
+||+.+ ++. ..+... ...+....|+|+|+.++.+...+ ..|.++|+.+++... +.. ......
T Consensus 153 iwd~~~--~~~~~~~~~h----~~~V~~~~~~~~~~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~ 218 (344)
T 4gqb_B 153 VWDLAQ--QVVLSSYRAH----AAQVTCVAASPHKDSVFLSCSED--------NRILLWDTRCPKPASQIGCSAPGYLPT 218 (344)
T ss_dssp EEETTT--TEEEEEECCC----SSCEEEEEECSSCTTEEEEEETT--------SCEEEEETTSSSCEEECC----CCCEE
T ss_pred EEECCC--CcEEEEEcCc----CCceEEEEecCCCCCceeeeccc--------cccccccccccceeeeeecceeeccce
Confidence 999987 543 334433 34567889999998665554433 458889999877543 322 222356
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN 323 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~ 323 (729)
...|+|++..++.+... +..|.++|+. +++. +..+.+.. ..+..++|+|||. +++.... .+ .
T Consensus 219 ~~~~~p~~~~~l~sg~~-------dg~v~~wd~~-~~~~--~~~~~~h~----~~v~~v~fsp~g~~~lasgs~-D~--~ 281 (344)
T 4gqb_B 219 SLAWHPQQSEVFVFGDE-------NGTVSLVDTK-STSC--VLSSAVHS----QCVTGLVFSPHSVPFLASLSE-DC--S 281 (344)
T ss_dssp EEEECSSCTTEEEEEET-------TSEEEEEESC-C--C--CEEEECCS----SCEEEEEECSSSSCCEEEEET-TS--C
T ss_pred eeeecCCCCcceEEecc-------CCcEEEEECC-CCcE--EEEEcCCC----CCEEEEEEccCCCeEEEEEeC-CC--e
Confidence 78999976655544422 3458999998 6654 44556665 5677889999996 6555544 34 4
Q ss_pred EEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 324 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
|.++|..+++...+......+....|++ +++.++.+...|+...+|.++
T Consensus 282 i~vwd~~~~~~~~~~~H~~~V~~v~~sp------------~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 282 LAVLDSSLSELFRSQAHRDFVRDATWSP------------LNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEECTTCCEEEEECCCSSCEEEEEECS------------SSTTEEEEEETTSCEEEEECC
T ss_pred EEEEECCCCcEEEEcCCCCCEEEEEEeC------------CCCeEEEEEcCCCeEEEEECC
Confidence 6667888887665543333333334443 677777777788888777654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-08 Score=103.41 Aligned_cols=233 Identities=6% Similarity=-0.026 Sum_probs=136.6
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~ 168 (729)
.+..+.++|.+.+..... .++...+|....+ ...+.+.... .....+.++++ ..+++...++.+.
T Consensus 82 ~v~~~~~~~~~~~l~s~s---~D~~i~lWd~~~~--~~~~~~~~~~---------~~~~~~~~spdg~~l~~g~~dg~v~ 147 (321)
T 3ow8_A 82 GVVSVDISHTLPIAASSS---LDAHIRLWDLENG--KQIKSIDAGP---------VDAWTLAFSPDSQYLATGTHVGKVN 147 (321)
T ss_dssp CEEEEEECSSSSEEEEEE---TTSEEEEEETTTT--EEEEEEECCT---------TCCCCEEECTTSSEEEEECTTSEEE
T ss_pred CEEEEEECCCCCEEEEEe---CCCcEEEEECCCC--CEEEEEeCCC---------ccEEEEEECCCCCEEEEEcCCCcEE
Confidence 345677777333333333 3566667765432 1111121111 11222333322 3445556678999
Q ss_pred EEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeeee
Q 004816 169 KHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFP 246 (729)
Q Consensus 169 ~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~ 246 (729)
++++.+ ++.. .+... ...+...+|+|||++|+....+ ..|.++|+.+++...... ........
T Consensus 148 i~~~~~--~~~~~~~~~~----~~~v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l 212 (321)
T 3ow8_A 148 IFGVES--GKKEYSLDTR----GKFILSIAYSPDGKYLASGAID---------GIINIFDIATGKLLHTLEGHAMPIRSL 212 (321)
T ss_dssp EEETTT--CSEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECCCSSCCCEE
T ss_pred EEEcCC--CceeEEecCC----CceEEEEEECCCCCEEEEEcCC---------CeEEEEECCCCcEEEEEcccCCceeEE
Confidence 999987 4432 33332 2446778999999988766543 358899999887644333 34456778
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~ 326 (729)
+|||||+.|+..+. ...|.++|+. +++. ...+.+.. ..+..++|+|||++++.... .+ .|.+
T Consensus 213 ~~spd~~~l~s~s~--------dg~i~iwd~~-~~~~--~~~~~~h~----~~v~~~~~sp~~~~l~s~s~-D~--~v~i 274 (321)
T 3ow8_A 213 TFSPDSQLLVTASD--------DGYIKIYDVQ-HANL--AGTLSGHA----SWVLNVAFCPDDTHFVSSSS-DK--SVKV 274 (321)
T ss_dssp EECTTSCEEEEECT--------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TS--CEEE
T ss_pred EEcCCCCEEEEEcC--------CCeEEEEECC-Ccce--eEEEcCCC----CceEEEEECCCCCEEEEEeC-CC--cEEE
Confidence 99999998876552 2348999988 6654 44555554 56678899999995445444 34 4666
Q ss_pred EEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEE
Q 004816 327 WIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 382 (729)
Q Consensus 327 ~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~ 382 (729)
+|+.+++..... .....+.. +.|.+ +++ .+++...+|..+||-
T Consensus 275 wd~~~~~~~~~~~~h~~~v~~---------v~~s~---~g~-~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 275 WDVGTRTCVHTFFDHQDQVWG---------VKYNG---NGS-KIVSVGDDQEIHIYD 318 (321)
T ss_dssp EETTTTEEEEEECCCSSCEEE---------EEECT---TSS-EEEEEETTCCEEEEE
T ss_pred EeCCCCEEEEEEcCCCCcEEE---------EEECC---CCC-EEEEEeCCCeEEEEe
Confidence 688777654333 22222222 33432 444 455666778777764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-07 Score=99.54 Aligned_cols=195 Identities=10% Similarity=-0.035 Sum_probs=118.8
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC--cccCCCCCcccccccccCCceEEEECC-EEEEEECCCC
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP--SDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~ 165 (729)
.+..+.|+| |+.++--. .++...||....+ .. ...+..+ +.....+..++++ ..+++...++
T Consensus 18 ~v~~l~~sp~g~~las~~----~D~~i~iw~~~~~---~~~~~~~~~~~-------h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCG----GDRRIRIWGTEGD---SWICKSVLSEG-------HQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEECTTSSCEEEEE----TTSCEEEEEEETT---EEEEEEEECSS-------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCEEEEEc----CCCeEEEEEcCCC---cceeeeeeccc-------cCCcEEEEEECCCCCEEEEEECCC
Confidence 345788999 66665433 4577788876432 11 1111111 1222334444433 4455666778
Q ss_pred cEEEEeCCCCCCCC---eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE----Eeee
Q 004816 166 RLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ----VLVS 238 (729)
Q Consensus 166 ~l~~~d~~~~~~~~---~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~----~lt~ 238 (729)
.+.+|++.. +.. ..+... ...+...+|+|||+.|+....+ ..|.++|+.++... .+..
T Consensus 84 ~v~iw~~~~--~~~~~~~~~~~h----~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 84 TTCIWKKNQ--DDFECVTTLEGH----ENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp CEEEEEECC--C-EEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTTSCEEEEEEECC
T ss_pred cEEEEEccC--CCeEEEEEccCC----CCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCCCCeEEEEEecC
Confidence 888888876 432 233333 3457888999999987766554 35888888765432 2223
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecC
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 318 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~ 318 (729)
........+|+|||+.|+..+.+ ..|.++|+. +++......+.+.. ..+..++|+|||++++....
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d--------~~i~~w~~~-~~~~~~~~~~~~h~----~~v~~l~~sp~g~~l~s~s~- 214 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYD--------DTVKLYREE-EDDWVCCATLEGHE----STVWSLAFDPSGQRLASCSD- 214 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETT--------SCEEEEEEE-TTEEEEEEEECCCS----SCEEEEEECTTSSEEEEEET-
T ss_pred cCCCeEEEEECCCCCEEEEEeCC--------CcEEEEEec-CCCEEEEEEecCCC----CceEEEEECCCCCEEEEEeC-
Confidence 34556778999999998876632 337888887 55433334455555 56778899999995445544
Q ss_pred CCceEEEEE
Q 004816 319 NGFWNLHKW 327 (729)
Q Consensus 319 ~g~~~l~~~ 327 (729)
.+.-+||..
T Consensus 215 D~~v~iW~~ 223 (345)
T 3fm0_A 215 DRTVRIWRQ 223 (345)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEecc
Confidence 566677754
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-10 Score=123.74 Aligned_cols=161 Identities=12% Similarity=-0.010 Sum_probs=105.7
Q ss_pred CCCEEEEEcCCCCCCccccchh-hhHHHhh-CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNL-SIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~-~~~~la~-~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
..|+||++||...+. ...|.. .++.|++ .||.|+++|+||.+.... ..... .. ....+|+.+++++|.++..+
T Consensus 69 ~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~~--~~~~~-~~-~~~~~dl~~~i~~l~~~~g~ 143 (432)
T 1gpl_A 69 NRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQY--SQASQ-NI-RVVGAEVAYLVQVLSTSLNY 143 (432)
T ss_dssp TSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSCH--HHHHH-HH-HHHHHHHHHHHHHHHHHHCC
T ss_pred CCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCccc--hhhHh-hH-HHHHHHHHHHHHHHHHhcCC
Confidence 458999999985443 223444 5667776 799999999997554331 11111 00 12257888999999765445
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCC
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCP 647 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P 647 (729)
+.+++.++|||+||.+|+.++. +|+++++++++.|..-+..... . ....++ ....+
T Consensus 144 ~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~p~~~~~~----------------~--~~~l~~-----~da~~ 200 (432)
T 1gpl_A 144 APENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAEPYFQDTP----------------E--EVRLDP-----SDAKF 200 (432)
T ss_dssp CGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBCTTTTTCC----------------T--TTSCCG-----GGSSE
T ss_pred CcccEEEEEeCHHHHHHHHHHHhcccccceeEEeccccccccCCC----------------h--hhccCc-----CCCce
Confidence 6789999999999999999888 8999999999887643211000 0 000011 22358
Q ss_pred EEEEEeCCCCCCCh---HHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 648 IILFQGLEDKVVPP---DQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 648 vL~i~G~~D~~vp~---~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
+.+||+..|.+||. .... ..| .+..||++||.
T Consensus 201 V~vIHt~~d~lVP~~~~g~~~-------~lg---~~dfypngg~~ 235 (432)
T 1gpl_A 201 VDVIHTDISPILPSLGFGMSQ-------KVG---HMDFFPNGGKD 235 (432)
T ss_dssp EEEECSCCSCHHHHCCCBCSS-------CCS---SEEEEEGGGSS
T ss_pred EEEEEcCCccccccccccccc-------ccc---ceEEccCCCCC
Confidence 99999999998776 2111 112 45667888885
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-08 Score=109.99 Aligned_cols=290 Identities=10% Similarity=0.059 Sum_probs=157.6
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEE--CCEEEEEECCCCc
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKDQR 166 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~ 166 (729)
++.++.|+| +..+..+.. .+|...||..... .....+...+ |...+.+..++ ++.++++...++.
T Consensus 121 ~V~~l~~~P~~~~~lasGs---~dg~i~lWd~~~~--~~~~~~~~~g-------H~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGS---KGGDIMLWNFGIK--DKPTFIKGIG-------AGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CEEEEEECSSCTTCEEEEE---TTSCEEEECSSCC--SCCEEECCCS-------SSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred CEEEEEEeCCCCCEEEEEe---CCCEEEEEECCCC--CceeEEEccC-------CCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 466889999 766655544 4677778866443 1222221111 22234445554 4467778778889
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFP 246 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~ 246 (729)
|.+||+.+ +..+.+..... ....+....|+|||+.|+....+ ..|+++|+.+.....+..........
T Consensus 189 v~iwd~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d---------g~i~~wd~~~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 189 TRLQDFKG--NILRVFASSDT-INIWFCSLDVSASSRMVVTGDNV---------GNVILLNMDGKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEEEETTS--CEEEEEECCSS-CSCCCCCEEEETTTTEEEEECSS---------SBEEEEESSSCBCCCSBCCSSCEEEE
T ss_pred EEEeeccC--CceeEEeccCC-CCccEEEEEECCCCCEEEEEeCC---------CcEeeeccCcceeEEEecccceEEee
Confidence 99999986 55444443311 12334567899999987655432 46889999876665555555667788
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCee-eeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 325 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~-~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~ 325 (729)
+|+|+++.++.+...+ ..|.++|+. .++.. ......+.. ..+..++|+|||+++++... .+. |.
T Consensus 257 ~~~p~~~~~~~s~s~d-------~~v~iwd~~-~~~~~~~~~~~~~h~----~~v~~~~~spdg~~l~s~~~-D~~--i~ 321 (435)
T 4e54_B 257 ALNPCCDWFLATASVD-------QTVKIWDLR-QVRGKASFLYSLPHR----HPVNAACFSPDGARLLTTDQ-KSE--IR 321 (435)
T ss_dssp EECTTCSSEEEEEETT-------SBCCEEETT-TCCSSSCCSBCCBCS----SCEEECCBCTTSSEEEEEES-SSC--EE
T ss_pred eecCCCceEEEEecCc-------ceeeEEecc-cccccceEEEeeecc----ccccceeECCCCCeeEEEcC-CCE--EE
Confidence 9999999776665322 337788887 44321 111122233 45667899999994444443 343 55
Q ss_pred EEEcCCCeE-EEeeccCccc------cCCcccccCcceeeeeecCCCCEEEEEEEECC---------eEEEEEEECCCCc
Q 004816 326 KWIESNNEV-LAIYSLDAEF------SRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---------RSYLGILDDFGHS 389 (729)
Q Consensus 326 ~~d~~~g~~-~~l~~~~~~~------~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g---------~~~ly~~d~~~g~ 389 (729)
++|..+++. ..+....... ....|.+ ++..++.....++ ...|.+++..+++
T Consensus 322 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 322 VYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP------------RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp EEESSSSSSEEEECCCCCCCCSSSCCCBCEECS------------SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred EEECCCCccceEEecccccccccceeEEEEEcC------------CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 567766543 3332211110 1122332 3333333332221 1236666777776
Q ss_pred eE-eeccC-CcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcce
Q 004816 390 LS-LLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 434 (729)
Q Consensus 390 ~~-~lt~~-~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~ 434 (729)
.. .+..+ ...|..+ ..+++.+++.++ . ..|.+.++..++.+
T Consensus 390 ~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d---~~i~iW~~~~gk~r 434 (435)
T 4e54_B 390 MMCQLYDPESSGISSLNEFNPMGDTLASAM-G---YHILIWSQQEARTR 434 (435)
T ss_dssp EEEEECCSSCCCCCCEEEECTTSSCEEEEC-S---SEEEECCCC-----
T ss_pred EEEEEeCCCCCcEEEEEEECCCCCEEEEEc-C---CcEEEEECCcCeee
Confidence 54 33333 2334443 334444554432 2 35777888877643
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-10 Score=128.40 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=88.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc-chhhhHHHhh-CCcEEEEecCC-CCCCCchhHHHhhc
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTS-RGWAFVDVNYG-GSTGYGREFRERLL 544 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~-~~~~~~~la~-~G~~v~~~d~r-Gs~g~g~~~~~~~~ 544 (729)
|...+ .+|.|.... ++++.|+||++|||++...... +.. ..|++ .|+.|+.+||| |..|+.........
T Consensus 97 dcl~l--nv~~P~~~~----~~~~~Pv~v~iHGG~~~~g~~~~~~~--~~la~~~g~vvv~~nYRlg~~gf~~~~~~~~~ 168 (542)
T 2h7c_A 97 DCLYL--NIYTPADLT----KKNRLPVMVWIHGGGLMVGAASTYDG--LALAAHENVVVVTIQYRLGIWGFFSTGDEHSR 168 (542)
T ss_dssp CCCEE--EEEECSCTT----SCCCEEEEEEECCSTTTSCCSTTSCC--HHHHHHHTCEEEEECCCCHHHHHCCCSSTTCC
T ss_pred CCcEE--EEEECCCCC----CCCCCCEEEEECCCcccCCCccccCH--HHHHhcCCEEEEecCCCCccccCCCCCcccCc
Confidence 55444 567786522 2467899999999875433332 322 23554 79999999999 43333222111112
Q ss_pred cCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEEeccccC
Q 004816 545 GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVAD 606 (729)
Q Consensus 545 ~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---~~~~~a~v~~~~~~d 606 (729)
+...+.|+.++++|+.++ ...|++||.|+|+|+||+++..++.. +.+|+++|+.+|...
T Consensus 169 ---~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 169 ---GNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp ---CCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred ---cchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 223478999999999775 35799999999999999999888863 678999999998654
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-10 Score=124.62 Aligned_cols=131 Identities=19% Similarity=0.213 Sum_probs=89.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc-chhhhHHHhhCC-cEEEEecCCCC-CCCchhHHH--h
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRG-WAFVDVNYGGS-TGYGREFRE--R 542 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~-~~~~~~~la~~G-~~v~~~d~rGs-~g~g~~~~~--~ 542 (729)
|...+ .+|.|.. ..++.|+||++|||+....... .......|+++| +.|+.+|||.+ -|++..... .
T Consensus 83 dcl~l--~v~~P~~------~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~~ 154 (498)
T 2ogt_A 83 DGLYL--NIWSPAA------DGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFGE 154 (498)
T ss_dssp CCCEE--EEEESCS------SSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTCG
T ss_pred CCcEE--EEEecCC------CCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhccCchhhccc
Confidence 55455 4566753 2467899999999974332221 122356778776 99999999932 122221110 0
Q ss_pred hccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccccC
Q 004816 543 LLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVAD 606 (729)
Q Consensus 543 ~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~d 606 (729)
.....+...+.|+..+++|+.++ ...|+++|.|+|+|+||++++.++. ...+|+++|+.+|...
T Consensus 155 ~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 155 AYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp GGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred cccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 01112234489999999999876 3468999999999999999988876 2468999999999765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.5e-08 Score=106.01 Aligned_cols=242 Identities=11% Similarity=0.090 Sum_probs=146.8
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
..|++++..++... .++.+++|++.+ ++....... ........|+|||+.|+....+ ..|.+++
T Consensus 62 ~~~s~~g~~l~~~~-~d~~v~i~d~~~--~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd 125 (420)
T 3vl1_A 62 NTFEKVGSHLYKAR-LDGHDFLFNTII--RDGSKMLKR----ADYTAVDTAKLQMRRFILGTTE---------GDIKVLD 125 (420)
T ss_dssp CEEEEEETTEEEEE-ETTEEEEEECCS--EETTTTSCS----CCEEEEEEECSSSCEEEEEETT---------SCEEEEC
T ss_pred eeeeecCCeEEEEE-cCCcEEEEEecc--cceeeEEec----CCceEEEEEecCCCEEEEEECC---------CCEEEEe
Confidence 46778777665543 467899999986 443333332 1222334689999987776543 3588899
Q ss_pred cCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 228 LNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 228 l~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
+.+++..... .........+|+|||+.|+..+ ....|.++|+. +++. ...+.+.. ..+..+.|+
T Consensus 126 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--------~d~~i~iwd~~-~~~~--~~~~~~h~----~~v~~~~~~ 190 (420)
T 3vl1_A 126 SNFNLQREIDQAHVSEITKLKFFPSGEALISSS--------QDMQLKIWSVK-DGSN--PRTLIGHR----ATVTDIAII 190 (420)
T ss_dssp TTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE--------TTSEEEEEETT-TCCC--CEEEECCS----SCEEEEEEE
T ss_pred CCCcceeeecccccCccEEEEECCCCCEEEEEe--------CCCeEEEEeCC-CCcC--ceEEcCCC----CcEEEEEEc
Confidence 9988776653 4455677889999999888666 23459999998 6654 34455554 567788999
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCc----cccCCccc------------ccCcceeeeeecCCCCEEEE
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA----EFSRPLWV------------FGINSYEIIQSHGEKNLIAC 370 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~----~~~~~~w~------------~~~~~~~~l~~~~~~~~l~~ 370 (729)
|||++++.... .+ .|.++|+.+++......... .+....|. .....+.|. .++.+++
T Consensus 191 ~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~ 263 (420)
T 3vl1_A 191 DRGRNVLSASL-DG--TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG----TYGKYVI 263 (420)
T ss_dssp TTTTEEEEEET-TS--CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS----CTTEEEE
T ss_pred CCCCEEEEEcC-CC--cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc----CCCCEEE
Confidence 99994444444 34 46666888776554442110 11011111 111223343 3345566
Q ss_pred EEEECCeEEEEEEECCCCce-Eeecc-CCcceEEe-eeeCCE-EEEEEeCCCCCceEEEEEcCCCc
Q 004816 371 SYRQNGRSYLGILDDFGHSL-SLLDI-PFTDIDNI-TLGNDC-LFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 371 ~s~~~g~~~ly~~d~~~g~~-~~lt~-~~~~v~~~-~~~~~~-~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+...+|..+|| |+.+++. ..+.. ....+..+ ..+++. +++.++.. ..++++|+.+++
T Consensus 264 ~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~ 324 (420)
T 3vl1_A 264 AGHVSGVITVH--NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN---GMLAQWDLRSPE 324 (420)
T ss_dssp EEETTSCEEEE--ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT---SEEEEEETTCTT
T ss_pred EEcCCCeEEEE--ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC---CeEEEEEcCCCc
Confidence 66677765555 6666553 33333 24456666 333443 66665543 478888988764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.5e-08 Score=108.33 Aligned_cols=242 Identities=9% Similarity=-0.021 Sum_probs=137.2
Q ss_pred EEEECCEEEEEECCCCcEEEEeC--CCCCCC-CeecCCCCCCCceeeecceecC----CCCEEEEEEeccCCCCCCcceE
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSI--DSKDSS-PLPITPDYGEPLVSYADGIFDP----RFNRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~--~~~~~~-~~~lt~~~~~~~~~~~~~~~SP----dG~~l~~~~~~~~~~~~~~~~~ 222 (729)
|+++++.+ |+...++.|.++|+ .+ ++ ...+..+ .....++||| ||++|+...... ..
T Consensus 186 ~spdg~~l-~v~~~d~~V~v~D~~~~t--~~~~~~i~~g-----~~p~~va~sp~~~~dg~~l~v~~~~~--------~~ 249 (543)
T 1nir_A 186 MSASGRYL-LVIGRDARIDMIDLWAKE--PTKVAEIKIG-----IEARSVESSKFKGYEDRYTIAGAYWP--------PQ 249 (543)
T ss_dssp ECTTSCEE-EEEETTSEEEEEETTSSS--CEEEEEEECC-----SEEEEEEECCSTTCTTTEEEEEEEES--------SE
T ss_pred ECCCCCEE-EEECCCCeEEEEECcCCC--CcEEEEEecC-----CCcceEEeCCCcCCCCCEEEEEEccC--------Ce
Confidence 34444444 44445689999999 55 43 2333322 3446788999 999876554332 46
Q ss_pred EEEEEcCCCceEEeeeCC------------CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec
Q 004816 223 IVAIALNGQNIQVLVSGS------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA 290 (729)
Q Consensus 223 l~~~dl~~g~~~~lt~~~------------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~ 290 (729)
|.++|.+++++....... .......+||||+.+++.. .. ...|+++|+. +++...+..+.
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-~~------~g~i~vvd~~-~~~~l~~~~i~ 321 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-KE------TGKVLLVNYK-DIDNLTVTSIG 321 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-TT------TTEEEEEECT-TSSSCEEEEEE
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-CC------CCeEEEEEec-CCCcceeEEec
Confidence 889999988875543321 1345678999999876554 32 3469999998 54432222232
Q ss_pred CCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceee-eeecCCCCEEE
Q 004816 291 GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI-IQSHGEKNLIA 369 (729)
Q Consensus 291 ~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~-l~~~~~~~~l~ 369 (729)
. . ..+..+.|+|||+.++++.. +...|.++|.++++.....+.. ....+.+. ..| .+ +++.++
T Consensus 322 ~-~----~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g-~~ph~g~g-----~~~~~p---~~g~~~ 385 (543)
T 1nir_A 322 A-A----PFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVG-KTPHPGRG-----ANFVHP---KYGPVW 385 (543)
T ss_dssp C-C----SSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECS-SSBCCTTC-----EEEEET---TTEEEE
T ss_pred c-C----cCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccC-CCCCCCCC-----cccCCC---CCccEE
Confidence 2 2 44567899999995555543 2346778999999876554311 00011010 111 11 446666
Q ss_pred EEEE-ECCeEEEEEEECCC-------Cc-eEeeccCCcceEEe-eeeCCEEEEEEeCCC----CCceEEEEEcCCCcc
Q 004816 370 CSYR-QNGRSYLGILDDFG-------HS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGV----EPSSVAKVTLDDHKL 433 (729)
Q Consensus 370 ~~s~-~~g~~~ly~~d~~~-------g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~----~~~~ly~~d~~~~~~ 433 (729)
++.. .++. |-+++.++ .+ ++.|..+......+ ..++++.++..+..+ ....+.++|.++++.
T Consensus 386 ~s~~~~d~~--V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 386 STSHLGDGS--ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EEEBSSSSE--EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred EeccCCCce--EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 5543 2344 55556655 23 34554433333333 344455555544211 123689999988764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5e-08 Score=108.71 Aligned_cols=295 Identities=9% Similarity=-0.013 Sum_probs=156.2
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEE----ECCEEEEEECCCC
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI----FGDTVIFSNYKDQ 165 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~ 165 (729)
+..+.++| |+.+|.... ++...+|..+.. +++...-++.+..+ ...+|++ +++.++..+..++
T Consensus 181 ~~~v~~spdg~~l~v~~~----d~~V~v~D~~~~-t~~~~~~i~~g~~p-------~~va~sp~~~~dg~~l~v~~~~~~ 248 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGR----DARIDMIDLWAK-EPTKVAEIKIGIEA-------RSVESSKFKGYEDRYTIAGAYWPP 248 (543)
T ss_dssp EEEEEECTTSCEEEEEET----TSEEEEEETTSS-SCEEEEEEECCSEE-------EEEEECCSTTCTTTEEEEEEEESS
T ss_pred cceEEECCCCCEEEEECC----CCeEEEEECcCC-CCcEEEEEecCCCc-------ceEEeCCCcCCCCCEEEEEEccCC
Confidence 55778999 666665542 256555554213 11211111111011 1223444 4556665555678
Q ss_pred cEEEEeCCCCCCCCee-cCCCC---C----CCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe-
Q 004816 166 RLYKHSIDSKDSSPLP-ITPDY---G----EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL- 236 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~-lt~~~---~----~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l- 236 (729)
.|.++|..+ ++..+ +.... . .+..+.....+||||+++++..... ..|+++|..+++...+
T Consensus 249 ~v~v~D~~t--~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~--------g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 249 QFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET--------GKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp EEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT--------TEEEEEECTTSSSCEEE
T ss_pred eEEEEeccc--cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC--------CeEEEEEecCCCcceeE
Confidence 899999887 55433 22210 0 0012456788999999866554322 5799999987543221
Q ss_pred -eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec-CCCCCccccccCcee-CCCCc-EE
Q 004816 237 -VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-GFDPTIVESPTEPKW-SSKGE-LF 312 (729)
Q Consensus 237 -t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~-~~~~~~~~~~~~~~w-spDG~-l~ 312 (729)
.....+..+..|||||++++..... ...|.++|+. ++++.. .+. +..+ .......| +||+. ++
T Consensus 319 ~i~~~~~~~~~~~spdg~~l~va~~~-------~~~v~v~D~~-tg~l~~--~i~~g~~p---h~g~g~~~~~p~~g~~~ 385 (543)
T 1nir_A 319 SIGAAPFLHDGGWDSSHRYFMTAANN-------SNKVAVIDSK-DRRLSA--LVDVGKTP---HPGRGANFVHPKYGPVW 385 (543)
T ss_dssp EEECCSSCCCEEECTTSCEEEEEEGG-------GTEEEEEETT-TTEEEE--EEECSSSB---CCTTCEEEEETTTEEEE
T ss_pred EeccCcCccCceECCCCCEEEEEecC-------CCeEEEEECC-CCeEEE--eeccCCCC---CCCCCcccCCCCCccEE
Confidence 1233445567899999988655522 2458999998 777532 222 2110 00112333 68855 65
Q ss_pred EEEecCCCceEEEEEEcCC-------CeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEE--EC--CeEEEE
Q 004816 313 FVTDRKNGFWNLHKWIESN-------NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR--QN--GRSYLG 381 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~-------g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~--~~--g~~~ly 381 (729)
++... +...|.++|.++ .+...-..... ...+ .+.+.| +++.||..+. .+ ....|.
T Consensus 386 ~s~~~--~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g---~~~~-----~v~~~p---dg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 386 STSHL--GDGSISLIGTDPKNHPQYAWKKVAELQGQG---GGSL-----FIKTHP---KSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp EEEBS--SSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCC-----CEECCT---TCCEEEECCTTCSSHHHHTCEE
T ss_pred EeccC--CCceEEEEEeCCCCCchhcCeEEEEEEcCC---CCce-----EEEcCC---CCCcEEEecCCCCCcccCceEE
Confidence 54432 334577777766 33322222111 1111 123333 6776665441 11 133678
Q ss_pred EEECCCCceE--ee--------ccCCcceEEe--eeeCCEEEEEEeC-CCCCceEEEEEcCCCcc
Q 004816 382 ILDDFGHSLS--LL--------DIPFTDIDNI--TLGNDCLFVEGAS-GVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 382 ~~d~~~g~~~--~l--------t~~~~~v~~~--~~~~~~~~~~~~~-~~~~~~ly~~d~~~~~~ 433 (729)
++|.++++.. .| +.+...+..+ ..+++.+++...+ .+....|.++|.++++.
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 8888877643 32 2222334444 5556666655433 34467899999998875
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-07 Score=98.75 Aligned_cols=205 Identities=9% Similarity=0.010 Sum_probs=127.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC--CEEEEEECCCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG--DTVIFSNYKDQ 165 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~ 165 (729)
..+..+.|+| +..++.+.. .++...+|..... +........ -+...+.+..+++ +.++++...++
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~---~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGS---KGGDIILWDYDVQ---NKTSFIQGM------GPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEE---BTSCEEEEETTST---TCEEEECCC------STTCBEEEEEEETTEEEEEEEEETTT
T ss_pred CCEEEEEECCCCCCEEEEEc---CCCeEEEEeCCCc---ccceeeecC------CcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 4567889999 645555554 3577778876533 222222110 0122234455555 26677777788
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAF 245 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~ 245 (729)
.|.+||+.+ ...+.+..... ....+...+|+|||+.|+....+ ..|+++|+.+.....+.........
T Consensus 142 ~i~iwd~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 142 ATTLRDFSG--SVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST---------GRLLLLGLDGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEEEEETTS--CEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT---------SEEEEEETTSCEEEEEECSSSCEEE
T ss_pred EEEEEECCC--CceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC---------CCEEEEECCCCEEEEeccCCCcEEE
Confidence 999999986 65555544311 12446788999999987766543 4799999976555666655667788
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe--eeeEEecCCCCCccccccCceeCC-CCcEEEEEecCCCce
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV--YKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFW 322 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~--~~~~~~~~~~~~~~~~~~~~~wsp-DG~l~~~~~~~~g~~ 322 (729)
.+|+|||+.++++... ...|.++|+. +++. ...... +.. ..+..+.|+| ||++++.... .+
T Consensus 210 ~~~~~~~~~~l~s~~~-------d~~i~iwd~~-~~~~~~~~~~~~-~~~----~~v~~~~~s~~~~~~l~~~~~-d~-- 273 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSV-------DATVKLWDLR-NIKDKNSYIAEM-PHE----KPVNAAYFNPTDSTKLLTTDQ-RN-- 273 (383)
T ss_dssp EEECSSCTTEEEEEET-------TSEEEEEEGG-GCCSTTCEEEEE-ECS----SCEEEEEECTTTSCEEEEEES-SS--
T ss_pred EEECCCCCCEEEEEeC-------CCEEEEEeCC-CCCcccceEEEe-cCC----CceEEEEEcCCCCCEEEEEcC-CC--
Confidence 9999999944344422 3459999998 4221 112233 333 5667889999 9994444443 33
Q ss_pred EEEEEEcCCCe
Q 004816 323 NLHKWIESNNE 333 (729)
Q Consensus 323 ~l~~~d~~~g~ 333 (729)
.|.++|+.+++
T Consensus 274 ~i~iwd~~~~~ 284 (383)
T 3ei3_B 274 EIRVYSSYDWS 284 (383)
T ss_dssp EEEEEETTBTT
T ss_pred cEEEEECCCCc
Confidence 56667777654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-07 Score=107.67 Aligned_cols=202 Identities=8% Similarity=-0.015 Sum_probs=119.9
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l 167 (729)
.+..+.++| |+.+++-. ++...||..... ...+.+.. |.....+.+++++ .++.+...++.|
T Consensus 20 ~~~~~~~spdg~~l~~~~-----~~~v~l~~~~~~--~~~~~~~~---------h~~~v~~~~~spdg~~lasg~~d~~v 83 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-----GTSVYTVPVGSL--TDTEIYTE---------HSHQTTVAKTSPSGYYCASGDVHGNV 83 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-----TTEEEEEETTCS--SCCEEECC---------CSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceeEEeeCCCCCEEEeCC-----CCEEEEecCCCc--ccCeEecC---------CCCceEEEEECCCCcEEEEEeCCCCE
Confidence 345678999 88777643 245566765432 12222221 1122333444433 445566678889
Q ss_pred EEEeCCCCCCCCe---ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 168 YKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 168 ~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
.+||+.+ ++.. .+... ...+...+|||||++|+....+... ...|+++|.. .....+........
T Consensus 84 ~lWd~~~--~~~~~~~~~~~~----~~~v~~v~fs~dg~~l~~~~~~~~~-----~~~v~~wd~~-~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 84 RIWDTTQ--TTHILKTTIPVF----SGPVKDISWDSESKRIAAVGEGRER-----FGHVFLFDTG-TSNGNLTGQARAMN 151 (611)
T ss_dssp EEEESSS--TTCCEEEEEECS----SSCEEEEEECTTSCEEEEEECCSSC-----SEEEEETTTC-CBCBCCCCCSSCEE
T ss_pred EEeECCC--CcceeeEeeccc----CCceEEEEECCCCCEEEEEECCCCc-----eeEEEEeeCC-CCcceecCCCCCce
Confidence 9999865 3322 22222 2457889999999998877654321 1467777742 22334444455677
Q ss_pred eeeeCCCCCe-EEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceE
Q 004816 245 FPRMDPRGER-MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 323 (729)
Q Consensus 245 ~~~~SPDG~~-la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~ 323 (729)
..+|+|||+. |+..+ .+ ..|.++|.. +++. ...+.++. ..+..++|+|||++++.... .+ .
T Consensus 152 ~v~f~p~~~~~l~s~s-~D-------~~v~lwd~~-~~~~--~~~l~~H~----~~V~~v~fspdg~~las~s~-D~--~ 213 (611)
T 1nr0_A 152 SVDFKPSRPFRIISGS-DD-------NTVAIFEGP-PFKF--KSTFGEHT----KFVHSVRYNPDGSLFASTGG-DG--T 213 (611)
T ss_dssp EEEECSSSSCEEEEEE-TT-------SCEEEEETT-TBEE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TS--C
T ss_pred EEEECCCCCeEEEEEe-CC-------CeEEEEECC-CCeE--eeeecccc----CceEEEEECCCCCEEEEEEC-CC--c
Confidence 8899999985 55444 22 337888876 4543 44556665 56778899999995555444 34 3
Q ss_pred EEEEEcCCCeEEEe
Q 004816 324 LHKWIESNNEVLAI 337 (729)
Q Consensus 324 l~~~d~~~g~~~~l 337 (729)
|.++|..+++....
T Consensus 214 i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 214 IVLYNGVDGTKTGV 227 (611)
T ss_dssp EEEEETTTCCEEEE
T ss_pred EEEEECCCCcEeee
Confidence 55567777765443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.00 E-value=9.6e-08 Score=97.95 Aligned_cols=230 Identities=9% Similarity=0.016 Sum_probs=140.4
Q ss_pred EEEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
..+++...++.|.+||+.+ +. .+.+... ...+....|+|||+.|+....+ ..|.++|+.+++..
T Consensus 26 ~~l~s~~~dg~v~lWd~~~--~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~s~d---------~~i~vwd~~~~~~~ 90 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYET--QVEVRSIQVT----ETPVRAGKFIARKNWIIVGSDD---------FRIRVFNYNTGEKV 90 (304)
T ss_dssp SEEEEEETTSEEEEEETTT--TEEEEEEECC----SSCEEEEEEEGGGTEEEEEETT---------SEEEEEETTTCCEE
T ss_pred CEEEEEcCCCcEEEEECCC--CceeEEeecc----CCcEEEEEEeCCCCEEEEECCC---------CEEEEEECCCCcEE
Confidence 4455666788999999987 43 3344333 2345778899999987766553 46889999988764
Q ss_pred E-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC-CCcEE
Q 004816 235 V-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELF 312 (729)
Q Consensus 235 ~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp-DG~l~ 312 (729)
. +....+.....+|+|||+.|+-.+. ...|.++|+. ++.. ....+.+.. ..+..++|+| |+.++
T Consensus 91 ~~~~~h~~~v~~~~~~~~~~~l~sgs~--------D~~v~lWd~~-~~~~-~~~~~~~h~----~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 91 VDFEAHPDYIRSIAVHPTKPYVLSGSD--------DLTVKLWNWE-NNWA-LEQTFEGHE----HFVMCVAFNPKDPSTF 156 (304)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEET--------TSCEEEEEGG-GTTE-EEEEECCCC----SCEEEEEECTTCTTEE
T ss_pred EEEeCCCCcEEEEEEcCCCCEEEEECC--------CCeEEEEECC-CCcc-hhhhhcccC----CcEEEEEECCCCCCEE
Confidence 4 4444566778899999998875552 2348889988 5532 234455555 5667889999 45655
Q ss_pred EEEecCCCceEEEEEEcCCCeEE-Eeec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 313 FVTDRKNGFWNLHKWIESNNEVL-AIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~~~-~l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
+.... .+ .|.++|+.+++.. .+.. ....+....|.+ . .++.++++...++..+|| |+.+++.
T Consensus 157 ~sgs~-D~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-------~----~~~~~l~s~s~D~~i~iW--d~~~~~~ 220 (304)
T 2ynn_A 157 ASGCL-DR--TVKVWSLGQSTPNFTLTTGQERGVNYVDYYP-------L----PDKPYMITASDDLTIKIW--DYQTKSC 220 (304)
T ss_dssp EEEET-TS--EEEEEETTCSSCSEEEECCCTTCEEEEEECC-------S----TTCCEEEEEETTSEEEEE--ETTTTEE
T ss_pred EEEeC-CC--eEEEEECCCCCccceeccCCcCcEEEEEEEE-------c----CCCCEEEEEcCCCeEEEE--eCCCCcc
Confidence 55554 34 4555676554322 2221 111111112221 1 234566677778876666 6666653
Q ss_pred -EeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 391 -SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 391 -~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
..+......+..+ ..+++.+++.++.. ..+.++|..+++.
T Consensus 221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~D---g~i~iWd~~~~~~ 262 (304)
T 2ynn_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSED---GTLKIWNSSTYKV 262 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETT---SCEEEEETTTCCE
T ss_pred ceeeCCCCCCEEEEEECCCCCEEEEEcCC---CeEEEEECCCCce
Confidence 4555555666666 44455565555543 3577778777654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-08 Score=105.33 Aligned_cols=175 Identities=14% Similarity=-0.008 Sum_probs=99.2
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC-CCceEEeee--CCCeeeeeeeCCCCCeE-EEEEecCCCCCC-
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQNIQVLVS--GSDFYAFPRMDPRGERM-AWIEWHHPNMPW- 267 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~-~g~~~~lt~--~~~~~~~~~~SPDG~~l-a~~~~~~~~~~~- 267 (729)
....+|||||++|+.+... .|.+++++ +|+..++.. ..+.....+|||||++| +|+.....-..+
T Consensus 42 ~~~~a~spdg~~l~~~~~~----------~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~ 111 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK----------KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT----------EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred CcEEEECCCCCEEEEEccc----------eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceecc
Confidence 3567899999987655432 46667765 676655432 11234457999999974 344310000000
Q ss_pred -----CCcEEEEEEecCCCCeeee-EEec-CCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcC-CCeEEEeec
Q 004816 268 -----DKAELWVGYISENGDVYKR-VCVA-GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEVLAIYS 339 (729)
Q Consensus 268 -----~~~~l~~~d~~~~g~~~~~-~~~~-~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~-~g~~~~l~~ 339 (729)
....+.+++++.+|+.... .... ... .....+.|+|||+.+|+++. +...|++++++ +|+.+.+..
T Consensus 112 ~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~spdG~~l~~~~~--~~~~v~~~~~~~~g~~~~~~~ 185 (365)
T 1jof_A 112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQEN----TGIHGMVFDPTETYLYSADL--TANKLWTHRKLASGEVELVGS 185 (365)
T ss_dssp EEESSSCCEEEEEEECTTCCEEEEEEEEECCTT----CCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCEEEEEE
T ss_pred ceeecCCceEEEEccCCCCcCcceEeeEEeCCC----CcceEEEECCCCCEEEEEcC--CCCEEEEEEECCCCCEEEeee
Confidence 1234778887634654322 2221 111 34567899999995555554 34568888887 777654431
Q ss_pred cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 340 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 340 ~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
..... .. .+...+.|.+ +++.+|+..+.++...+|.++.++|+.
T Consensus 186 ~~~~~--~g--~~p~~~~~sp---dg~~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 186 VDAPD--PG--DHPRWVAMHP---TGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp EECSS--TT--CCEEEEEECT---TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EecCC--CC--CCCCEeEECC---CCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 11000 00 0122344544 777787776667778888888767764
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-10 Score=126.39 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=85.4
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc-chh--hh-HHH-hhCCcEEEEecCCCCC-CCc--hhHHHh
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNL--SI-QYW-TSRGWAFVDVNYGGST-GYG--REFRER 542 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~-~~~--~~-~~l-a~~G~~v~~~d~rGs~-g~g--~~~~~~ 542 (729)
.+...+|.|.+.. +.++.|+||++|||++...... +.. ++ ..+ ...|+.|+.+|||.+. |+. .+....
T Consensus 97 cl~l~v~~P~~~~----~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~~~ 172 (534)
T 1llf_A 97 CLTINVVRPPGTK----AGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKAE 172 (534)
T ss_dssp CCEEEEEECTTCC----TTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHH
T ss_pred CeEEEEEECCCCC----CCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCccccccc
Confidence 3555677886521 2457899999999875433322 221 11 122 2358999999999643 111 111111
Q ss_pred hccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh-C--------CCcceEEEEeccc
Q 004816 543 LLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F--------RDTFKAGASLYGV 604 (729)
Q Consensus 543 ~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~--------~~~~~a~v~~~~~ 604 (729)
. .+...+.|+.++++|+.++ ...|++||.|+|+|+||++++.++. . ..+|+++|+.+|.
T Consensus 173 ~---~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 173 G---SGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp T---CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred C---CCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 2 2334489999999999875 3469999999999999998877665 3 5689999999984
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.99 E-value=9e-08 Score=98.36 Aligned_cols=227 Identities=11% Similarity=0.108 Sum_probs=137.0
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
..+++...++.|.+|++.+ ++.. .+... ...+...+|+|||+.|+....+ ..|.++|+.+++..
T Consensus 36 ~~l~s~~~dg~i~iw~~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~ 100 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYD--GKFEKTISGH----KLGISDVAWSSDSNLLVSASDD---------KTLKIWDVSSGKCL 100 (312)
T ss_dssp SEEEEEETTSCEEEEETTT--CCEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTCCEE
T ss_pred CEEEEeeCCCeEEEEeCCC--cccchhhccC----CCceEEEEEcCCCCEEEEECCC---------CEEEEEECCCCcEE
Confidence 3455556778899999976 5443 34333 3456788999999987766543 46889999988764
Q ss_pred E-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 235 V-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 235 ~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
. +...........|+|||+.|+..+. ...|.++|+. +++. ...+.... ..+..+.|+|||++++
T Consensus 101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~--------d~~i~iwd~~-~~~~--~~~~~~~~----~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 101 KTLKGHSNYVFCCNFNPQSNLIVSGSF--------DESVRIWDVK-TGKC--LKTLPAHS----DPVSAVHFNRDGSLIV 165 (312)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEET--------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECTTSSEEE
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeC--------CCcEEEEECC-CCEE--EEEecCCC----CcEEEEEEcCCCCEEE
Confidence 4 4334455677899999998876662 2349999998 6654 34444444 4567789999999555
Q ss_pred EEecCCCceEEEEEEcCCCeEEE-eecc-CccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLA-IYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~-l~~~-~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
.... .+ .|.++|+.+++... +... ..... .+.|.+ +++ ++++...++..+|| |+.+++..
T Consensus 166 ~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~---------~~~~~~---~~~-~l~~~~~d~~i~iw--d~~~~~~~ 227 (312)
T 4ery_A 166 SSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVS---------FVKFSP---NGK-YILAATLDNTLKLW--DYSKGKCL 227 (312)
T ss_dssp EEET-TS--CEEEEETTTCCEEEEECCSSCCCEE---------EEEECT---TSS-EEEEEETTTEEEEE--ETTTTEEE
T ss_pred EEeC-CC--cEEEEECCCCceeeEEeccCCCceE---------EEEECC---CCC-EEEEEcCCCeEEEE--ECCCCcEE
Confidence 5544 34 46667887765433 2211 11111 233332 454 44555667755554 77666543
Q ss_pred -eeccCCcc---e-EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 392 -LLDIPFTD---I-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 392 -~lt~~~~~---v-~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.+...... + ..+..+++.+++.++.. ..++++|+.+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~ 271 (312)
T 4ery_A 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEI 271 (312)
T ss_dssp EEECSSCCSSSCCCEEEECSSSCEEEECCTT---SCEEEEETTTCCE
T ss_pred EEEEecCCceEEEEEEEEeCCCcEEEEECCC---CEEEEEECCCchh
Confidence 33322221 1 12233455555544432 4677888877653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.98 E-value=7.8e-08 Score=101.20 Aligned_cols=236 Identities=9% Similarity=-0.035 Sum_probs=134.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCC--CcccCCCCCcccccccccCCceEEEECC-EEEEEECCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDE--PSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~ 164 (729)
..+..+.|+| ++.++.-. .++...+|..... + ....+.. +........++++ ..+++...+
T Consensus 9 ~~i~~~~~s~~~~~l~~~~----~d~~v~i~~~~~~---~~~~~~~~~~--------h~~~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICP----NNHEVHIYEKSGN---KWVQVHELKE--------HNGQVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp SCCCEEEECTTSSEEEEEC----SSSEEEEEEEETT---EEEEEEEEEC--------CSSCEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCCEEEEEe----CCCEEEEEeCCCC---cEEeeeeecC--------CCCcccEEEEeCCCCEEEEEcCC
Confidence 3567899999 65555432 3567677765332 2 1111111 1112333444422 344555567
Q ss_pred CcEEEEeCCCCCCCCee---cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce----EEee
Q 004816 165 QRLYKHSIDSKDSSPLP---ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI----QVLV 237 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~---lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~----~~lt 237 (729)
+.|.+|++.+ ++... +... ...+....|+|||+.|+....+ ..|.++++.+++. +.+.
T Consensus 74 g~i~vwd~~~--~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 74 RNAYVWTLKG--RTWKPTLVILRI----NRAARCVRWAPNEKKFAVGSGS---------RVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp SCEEEEEEET--TEEEEEEECCCC----SSCEEEEEECTTSSEEEEEETT---------SSEEEEEEETTTTEEEEEEEC
T ss_pred CeEEEEECCC--CeeeeeEEeecC----CCceeEEEECCCCCEEEEEeCC---------CEEEEEEecCCCcceeeeeee
Confidence 8899999976 54222 2222 3456788999999988776643 3467777766652 2332
Q ss_pred e-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-----------------CCCeeeeEEecCCCCCcccc
Q 004816 238 S-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-----------------NGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 238 ~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-----------------~g~~~~~~~~~~~~~~~~~~ 299 (729)
. .........|+|||+.|+.... ...|+++|+.. .++. ...+.... ..
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~--------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~ 204 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSC--------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL--MFESSSSC----GW 204 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEET--------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE--EEECCCCS----SC
T ss_pred cccCCCeeEEEEcCCCCEEEEEcC--------CCCEEEEEcccccccccccccccccccchhhh--eEecCCCC----Ce
Confidence 2 2455678899999998876652 23488888530 2332 33444443 55
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeE
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 378 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~ 378 (729)
+..+.|+|||++++.... .+ .|.++|..+++..... .....+. .+.|.+ ++ .+++.. .++..
T Consensus 205 v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~v~---------~~~~~~---~~-~~l~~~-~d~~i 267 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWVSH-DS--TVCLADADKKMAVATLASETLPLL---------AVTFIT---ES-SLVAAG-HDCFP 267 (372)
T ss_dssp EEEEEECSSSSEEEEEET-TT--EEEEEEGGGTTEEEEEECSSCCEE---------EEEEEE---TT-EEEEEE-TTSSC
T ss_pred EEEEEECCCCCEEEEEeC-CC--EEEEEECCCCceeEEEccCCCCeE---------EEEEec---CC-CEEEEE-eCCeE
Confidence 678899999994444443 34 4667788776644333 2222222 234442 44 444444 67777
Q ss_pred EEEEEEC
Q 004816 379 YLGILDD 385 (729)
Q Consensus 379 ~ly~~d~ 385 (729)
.+|.++.
T Consensus 268 ~i~~~~~ 274 (372)
T 1k8k_C 268 VLFTYDS 274 (372)
T ss_dssp EEEEEET
T ss_pred EEEEccC
Confidence 7777664
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-08 Score=107.61 Aligned_cols=250 Identities=11% Similarity=0.004 Sum_probs=137.9
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~ 168 (729)
.+..+.|+|.+.++ +.. .+|...||....+ +....... ...-+...+.+..++++ ..+++...++.|.
T Consensus 96 ~V~~~~~s~d~~~l-~~s---~dg~v~lWd~~~~---~~~~~~~~----~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 96 GVTDVAWVSEKGIL-VAS---DSGAVELWEILEK---ESLLVNKF----AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp CEEEEEEETTTEEE-EEE---TTSCEEEC-----------CCCCE----EECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CEEEEEEcCCCCEE-EEE---CCCEEEEeecccc---ceeEEEee----ccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 35678999833333 222 3466667654332 11111100 00001122334444433 4455666788899
Q ss_pred EEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee---CCCeee
Q 004816 169 KHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS---GSDFYA 244 (729)
Q Consensus 169 ~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~---~~~~~~ 244 (729)
+||+.+ ++. ..+... ...+...+|+|+++.++.+...+ ..|.++|+.+++...... ......
T Consensus 165 iwd~~~--~~~~~~~~~h----~~~v~~v~~s~~~~~~~~s~~~d--------g~v~~wd~~~~~~~~~~~~~~~~~~v~ 230 (357)
T 4g56_B 165 VWDLSQ--KAVLKSYNAH----SSEVNCVAACPGKDTIFLSCGED--------GRILLWDTRKPKPATRIDFCASDTIPT 230 (357)
T ss_dssp EEETTT--TEEEEEECCC----SSCEEEEEECTTCSSCEEEEETT--------SCEEECCTTSSSCBCBCCCTTCCSCEE
T ss_pred EEECCC--CcEEEEEcCC----CCCEEEEEEccCCCceeeeeccC--------CceEEEECCCCceeeeeeecccccccc
Confidence 999987 543 333333 34567788999997655544332 358888998876543322 233456
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN 323 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~ 323 (729)
..+|+||+..++.+... ...|.++|+. +++. ...+.... ..+..++|+|||+ ++..... .+ .
T Consensus 231 ~v~~sp~~~~~la~g~~-------d~~i~~wd~~-~~~~--~~~~~~~~----~~v~~l~~sp~~~~~lasgs~-D~--~ 293 (357)
T 4g56_B 231 SVTWHPEKDDTFACGDE-------TGNVSLVNIK-NPDS--AQTSAVHS----QNITGLAYSYHSSPFLASISE-DC--T 293 (357)
T ss_dssp EEEECTTSTTEEEEEES-------SSCEEEEESS-CGGG--CEEECCCS----SCEEEEEECSSSSCCEEEEET-TS--C
T ss_pred chhhhhcccceEEEeec-------ccceeEEECC-CCcE--eEEEeccc----eeEEEEEEcCCCCCEEEEEeC-CC--E
Confidence 78999997665545422 2348999988 6654 44555554 5667889999986 6555544 34 4
Q ss_pred EEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 324 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
|.++|.++++..........+....|+| .++.++++...||...+|.+..++.....+
T Consensus 294 i~iwd~~~~~~~~~~~H~~~V~~vafsP------------~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~i 351 (357)
T 4g56_B 294 VAVLDADFSEVFRDLSHRDFVTGVAWSP------------LDHSKFTTVGWDHKVLHHHLPSEGRTENLI 351 (357)
T ss_dssp EEEECTTSCEEEEECCCSSCEEEEEECS------------SSTTEEEEEETTSCEEEEECC---------
T ss_pred EEEEECCCCcEeEECCCCCCEEEEEEeC------------CCCCEEEEEcCCCeEEEEECCCCCcccccc
Confidence 6667888887666553333333334443 344566677788988888775544444333
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.9e-08 Score=98.09 Aligned_cols=237 Identities=14% Similarity=0.091 Sum_probs=140.3
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
..|.++++.++++....+.|+++++++ + .+.+... ......+.++|||+.++ . ... ...|++++
T Consensus 33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~--~-~~~~~~~----~~~~~~l~~~~dg~l~v-~-~~~-------~~~i~~~d 96 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQNRTWAWSDDG--Q-LSPEMHP----SHHQNGHCLNKQGHLIA-C-SHG-------LRRLERQR 96 (296)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTS--C-EEEEESS----CSSEEEEEECTTCCEEE-E-ETT-------TTEEEEEC
T ss_pred CeEeCCCCEEEEEeCCCCEEEEEECCC--C-eEEEECC----CCCcceeeECCCCcEEE-E-ecC-------CCeEEEEc
Confidence 445555667889888888999999987 6 5555543 23346788999999533 3 221 14699999
Q ss_pred cCCCceEEeeeC-C----CeeeeeeeCCCCCeEEEEEec----------CCCCCCCCcEEEEEEecCCCCeeeeEEecCC
Q 004816 228 LNGQNIQVLVSG-S----DFYAFPRMDPRGERMAWIEWH----------HPNMPWDKAELWVGYISENGDVYKRVCVAGF 292 (729)
Q Consensus 228 l~~g~~~~lt~~-~----~~~~~~~~SPDG~~la~~~~~----------~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~ 292 (729)
.++|+.+.+... . ......+++|||+ |+++... .....-....||.++.+ ++. ..+. ..
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~--~~~~-~~ 170 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTL--SAPI-RD 170 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCE--EEEE-CC
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC--CCE--EEee-cC
Confidence 988887766432 1 1234678999997 5554310 00000013468888754 443 2222 22
Q ss_pred CCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcC-CCeE---EEeeccCccccCCcccccCcceeeeeecCCCCEE
Q 004816 293 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLI 368 (729)
Q Consensus 293 ~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~-~g~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l 368 (729)
. .....++|+|||+++ .++. ....|++++++ +|+. ..+. .. ... ....+.+. .++.+
T Consensus 171 ~----~~~~gi~~s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~-~~-~~~------~p~~i~~d----~~G~l 231 (296)
T 3e5z_A 171 R----VKPNGLAFLPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHF-TV-EPG------KTDGLRVD----AGGLI 231 (296)
T ss_dssp C----SSEEEEEECTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEE-CC-SSS------CCCSEEEB----TTSCE
T ss_pred C----CCCccEEECCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEe-eC-CCC------CCCeEEEC----CCCCE
Confidence 2 344678999999955 4443 33568888875 4554 2232 11 111 11234443 33456
Q ss_pred EEEEEECCeEEEEEEECCCCceEeeccCCcceEEe-e-eeCCEEEEEEeCCCCCceEEEEEcCCCcce
Q 004816 369 ACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-T-LGNDCLFVEGASGVEPSSVAKVTLDDHKLK 434 (729)
Q Consensus 369 ~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~-~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~ 434 (729)
++.. .+ .|++++.+++....+..+.. +..+ . .+++..+++++. ..+|++++++++++
T Consensus 232 ~v~~--~~--~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~----~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 232 WASA--GD--GVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS----TEFWSIETNVRGLE 290 (296)
T ss_dssp EEEE--TT--EEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEET----TEEEEEECSCCBCC
T ss_pred EEEc--CC--eEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC----CeEEEEEccccccc
Confidence 5555 33 58888998776777766555 5555 3 344445555543 27999998887754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-07 Score=97.53 Aligned_cols=240 Identities=10% Similarity=0.027 Sum_probs=137.1
Q ss_pred eEEEECCEEEEE--ECCCCcEEEEeCCCCCCC----CeecCCCCCCCceeeecceecC-CCCEEEEEEeccCCCCCCcce
Q 004816 149 AFRIFGDTVIFS--NYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTT 221 (729)
Q Consensus 149 ~~~~~~~~i~~~--~~~~~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~SP-dG~~l~~~~~~~~~~~~~~~~ 221 (729)
.+.++++.+.+. ...++.|.+|++... +. ...+... ...+...+|+| +++.|+....+ .
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~~h----~~~V~~~~~~p~~~~~l~s~s~d---------g 104 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKT-GRVDKNVPLVCGH----TAPVLDIAWCPHNDNVIASGSED---------C 104 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCC-EECCTTCCCBCCC----SSCEEEEEECTTCTTEEEEEETT---------S
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccC-CCCCCCCceEecC----CCCEEEEEeCCCCCCEEEEEeCC---------C
Confidence 355556644443 455779999998641 21 1122222 35578899999 88876655443 4
Q ss_pred EEEEEEcCCCc--------eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEe--cC
Q 004816 222 EIVAIALNGQN--------IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV--AG 291 (729)
Q Consensus 222 ~l~~~dl~~g~--------~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~--~~ 291 (729)
.|.++++.++. ...+..........+|+|||+.++++... ...|.++|+. +++. ...+ ..
T Consensus 105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~-------dg~i~iwd~~-~~~~--~~~~~~~~ 174 (402)
T 2aq5_A 105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-------DNVILVWDVG-TGAA--VLTLGPDV 174 (402)
T ss_dssp EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET-------TSCEEEEETT-TTEE--EEEECTTT
T ss_pred eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC-------CCEEEEEECC-CCCc--cEEEecCC
Confidence 68888988762 34455455667789999999544444422 2349999998 6654 3344 44
Q ss_pred CCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEE
Q 004816 292 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC 370 (729)
Q Consensus 292 ~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~ 370 (729)
.. ..+..+.|+|||+++++... .+ .|.++|+.+++..... ...... ....+.|.+ ++ .+++
T Consensus 175 ~~----~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~---~~-~~l~ 236 (402)
T 2aq5_A 175 HP----DTIYSVDWSRDGALICTSCR-DK--RVRVIEPRKGTVVAEKDRPHEGT-------RPVHAVFVS---EG-KILT 236 (402)
T ss_dssp CC----SCEEEEEECTTSSCEEEEET-TS--EEEEEETTTTEEEEEEECSSCSS-------SCCEEEECS---TT-EEEE
T ss_pred CC----CceEEEEECCCCCEEEEEec-CC--cEEEEeCCCCceeeeeccCCCCC-------cceEEEEcC---CC-cEEE
Confidence 44 56678899999994444433 23 5777888887655433 211110 012233432 44 4444
Q ss_pred EE-EECCeEEEEEEECCCCce--Eeec-cCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 371 SY-RQNGRSYLGILDDFGHSL--SLLD-IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 371 ~s-~~~g~~~ly~~d~~~g~~--~~lt-~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+. .......|.++|+.+++. .... .....+..+ ..+++..++.+++.+ ..++.+++.+++
T Consensus 237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d--g~i~i~d~~~~~ 301 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD--SSIRYFEITSEA 301 (402)
T ss_dssp EEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC--SCEEEEEECSST
T ss_pred EeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC--CeEEEEEecCCC
Confidence 44 223345677778776543 2222 223345555 444444555555433 356777777766
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-07 Score=96.67 Aligned_cols=220 Identities=12% Similarity=0.060 Sum_probs=127.1
Q ss_pred eEEEECC-EEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 149 ~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
+..++++ ..+++...++.|.+||+.+ ++.. .+... ...+...+|+|||+.|+....+ ..|.++
T Consensus 128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~s~d---------~~v~iw 192 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDRLIRIWDIEN--RKIVMILQGH----EQDIYSLDYFPSGDKLVSGSGD---------RTVRIW 192 (393)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEEccC----CCCEEEEEEcCCCCEEEEecCC---------CcEEEE
Confidence 3444433 4455566788999999987 5433 33333 3456788999999987765543 468889
Q ss_pred EcCCCceEEeeeCCCeeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEe-------cCCCCCccc
Q 004816 227 ALNGQNIQVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-------AGFDPTIVE 298 (729)
Q Consensus 227 dl~~g~~~~lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~-------~~~~~~~~~ 298 (729)
|+.+++..............+|+| ||+.|+..+. ...|.++|+. ++... ..+ .+.. .
T Consensus 193 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~--------d~~v~iwd~~-~~~~~--~~~~~~~~~~~~h~----~ 257 (393)
T 1erj_A 193 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL--------DRAVRVWDSE-TGFLV--ERLDSENESGTGHK----D 257 (393)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET--------TSCEEEEETT-TCCEE--EEEC------CCCS----S
T ss_pred ECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcC--------CCcEEEEECC-CCcEE--EeecccccCCCCCC----C
Confidence 999887655545555567789999 9998876662 2348888988 66542 222 2222 4
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE-------------EeeccCccccCCcccccCcceeeeeecCCC
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-------------AIYSLDAEFSRPLWVFGINSYEIIQSHGEK 365 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~-------------~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~ 365 (729)
.+..+.|+|||++++.... .+. |.++|+.+.... .+......+ ..+.|.+ ++
T Consensus 258 ~v~~v~~~~~g~~l~s~s~-d~~--v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------~~~~~~~---~~ 322 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSL-DRS--VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------LSVATTQ---ND 322 (393)
T ss_dssp CEEEEEECTTSSEEEEEET-TSE--EEEEEC---------------CEEEEEECCSSCE---------EEEEECG---GG
T ss_pred CEEEEEECCCCCEEEEEeC-CCE--EEEEECCCCCCcccccCCCCCcceEEEecccCcE---------EEEEECC---CC
Confidence 5667899999995555544 454 444455442211 111111111 1233432 44
Q ss_pred CEEEEEEEECCeEEEEEEECCCCceE-eeccCCcceEEe-eee------CCEEEEEEeC
Q 004816 366 NLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI-TLG------NDCLFVEGAS 416 (729)
Q Consensus 366 ~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt~~~~~v~~~-~~~------~~~~~~~~~~ 416 (729)
. ++++...++...| +|..+++.. .+......+..+ ..+ ++.+++.++.
T Consensus 323 ~-~l~sgs~D~~v~i--wd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 323 E-YILSGSKDRGVLF--WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp C-EEEEEETTSEEEE--EETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred C-EEEEEeCCCeEEE--EECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 4 5556666776555 477776643 444445556665 222 3455555553
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-10 Score=128.03 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=84.1
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cchh--hh-HHHh-hCCcEEEEecCCCCC-CCc--hhHHHhh
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNL--SI-QYWT-SRGWAFVDVNYGGST-GYG--REFRERL 543 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~--~~-~~la-~~G~~v~~~d~rGs~-g~g--~~~~~~~ 543 (729)
+...+|.|.+.. +.++.|+||++|||++..... .+.. ++ +.++ ..|+.|+.+|||.+. |+. .......
T Consensus 106 l~l~v~~P~~~~----~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~~gf~~~~~~~~~~ 181 (544)
T 1thg_A 106 LYLNVFRPAGTK----PDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITAEG 181 (544)
T ss_dssp CEEEEEEETTCC----TTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHHT
T ss_pred eEEEEEeCCCCC----CCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCcccCCCcccccccC
Confidence 444567776521 246789999999987544332 2221 11 1222 248999999999743 111 1111111
Q ss_pred ccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhC---------CCcceEEEEeccc
Q 004816 544 LGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---------RDTFKAGASLYGV 604 (729)
Q Consensus 544 ~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---------~~~~~a~v~~~~~ 604 (729)
.+...+.|+.++++|+.++ ...|++||.|+|+|+||++++.++.. ..+|+++|+.+|.
T Consensus 182 ---~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~ 251 (544)
T 1thg_A 182 ---NTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEeccc
Confidence 2334489999999999875 34699999999999999999877652 4679999999984
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.96 E-value=8.7e-07 Score=93.51 Aligned_cols=252 Identities=8% Similarity=-0.036 Sum_probs=138.5
Q ss_pred CceEEEECCEEEEEEC---------CCCcEEEEeCCCCCCCC-eecCCC-CC-C-CceeeecceecCCCCEEEEEEeccC
Q 004816 147 GGAFRIFGDTVIFSNY---------KDQRLYKHSIDSKDSSP-LPITPD-YG-E-PLVSYADGIFDPRFNRYVTVREDRR 213 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~---------~~~~l~~~d~~~~~~~~-~~lt~~-~~-~-~~~~~~~~~~SPdG~~l~~~~~~~~ 213 (729)
+..++++++.+++.+. .++.|.++|+.+ .+. ..+.-. .. . .......+.|||||++|++.....
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t--~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~- 146 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA- 146 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC--CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC-
Confidence 4456677777777753 234688999976 433 222211 00 0 001124678999999977764321
Q ss_pred CCCCCcceEEEEEEcCCCceEEe-eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE----
Q 004816 214 QDALNSTTEIVAIALNGQNIQVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC---- 288 (729)
Q Consensus 214 ~~~~~~~~~l~~~dl~~g~~~~l-t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~---- 288 (729)
...|.++| ++++.... ..-... +.+.|+|++.++... . ...+.++|. +++......
T Consensus 147 ------~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~-~------dg~~~~vd~--~g~~~~~~~~~~~ 207 (373)
T 2mad_H 147 ------GPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLC-A------QGGLAKTDH--AGGAAGAGLVGAM 207 (373)
T ss_pred ------CCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEc-C------CCCEEEEEC--CCcEEEEEecccc
Confidence 14699999 99877544 433222 345677776654432 2 123556665 233221110
Q ss_pred ecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeecc---CccccCCcccccCc-ceeeeeecC
Q 004816 289 VAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGIN-SYEIIQSHG 363 (729)
Q Consensus 289 ~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~---~~~~~~~~w~~~~~-~~~~l~~~~ 363 (729)
..+.. .....+.+++|+. ++|.+.. + .++.+|..++..+.+... ........|.+... .+.+.+
T Consensus 208 ~~~~~----p~~~~~~~~~~~~~~~~~~~~--~--~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~--- 276 (373)
T 2mad_H 208 LTAAQ----NLLTQPAQANKSGRIVWPVYS--G--KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK--- 276 (373)
T ss_pred ccCCc----ceeecceeEecCCEEEEEcCC--c--eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC---
Confidence 11111 1223466778876 7777643 3 789999877654433211 11112334554321 234443
Q ss_pred CCCEEEEEEEEC-------CeEEEEEEECCCCce-EeeccCCcc-eEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 364 EKNLIACSYRQN-------GRSYLGILDDFGHSL-SLLDIPFTD-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 364 ~~~~l~~~s~~~-------g~~~ly~~d~~~g~~-~~lt~~~~~-v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+++++|+..... +...|+++|++++++ +.|..+... -..++.+++.++|..... ...++.+|.++++.
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~v 353 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCC--CCeEEEEECCCCCE
Confidence 677788766431 235799999998876 566544322 222355666466654422 25799999998875
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-07 Score=97.98 Aligned_cols=265 Identities=9% Similarity=0.023 Sum_probs=156.4
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~ 168 (729)
.+..+.|+|.+.+..... .++...+|....+ +....+.. |...+.+..++++ .++++...++.|.
T Consensus 110 ~V~~~~~~p~~~~l~s~s---~Dg~i~vwd~~~~---~~~~~l~~--------h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSAS---EDATIKVWDYETG---DFERTLKG--------HTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp CEEEEEECSSSSEEEEEE---SSSCEEEEETTTC---CCCEEECC--------CSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred cEEEEEEcCCCCEEEEEe---CCCeEEEEECCCC---cEEEEEec--------cCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 456788998333444433 4577778876443 22222211 1112333444432 4566666788899
Q ss_pred EEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeeeee
Q 004816 169 KHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYAFP 246 (729)
Q Consensus 169 ~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~ 246 (729)
+||+.+ ++. +.+... ...+...+|+|+|+.|+....+ ..|.++|+.++... .+..........
T Consensus 176 iwd~~~--~~~~~~~~~h----~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 176 LWDFQG--FECIRTMHGH----DHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEETTS--SCEEECCCCC----SSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEeCCC--CceeEEEcCC----CCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999987 543 333333 3457888999999987665543 46899999988754 344444566778
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC------------------
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK------------------ 308 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD------------------ 308 (729)
.|+|||+.|+-.+. ...|.++|+. +++. ...+.+.. ..+..+.|+|+
T Consensus 241 ~~~~~g~~l~s~s~--------D~~v~vwd~~-~~~~--~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 241 RPNQDGTLIASCSN--------DQTVRVWVVA-TKEC--KAELREHR----HVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp EECTTSSEEEEEET--------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred EECCCCCEEEEEcC--------CCeEEEEECC-CCce--eeEecCCC----ceEEEEEEcCcccccchhhhccccccccC
Confidence 99999998876652 2348888987 5654 33444444 45566788886
Q ss_pred --CcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 309 --GELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 309 --G~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
|.+++.... .+ .|.++|+.+++..... .....+. .+.|.+ +++ ++++...++...|| |.
T Consensus 306 ~~g~~l~sgs~-D~--~i~iwd~~~~~~~~~~~~h~~~v~---------~v~~~~---~g~-~l~s~s~D~~i~vw--d~ 367 (410)
T 1vyh_C 306 KPGPFLLSGSR-DK--TIKMWDVSTGMCLMTLVGHDNWVR---------GVLFHS---GGK-FILSCADDKTLRVW--DY 367 (410)
T ss_dssp --CCEEEEEET-TS--EEEEEETTTTEEEEEEECCSSCEE---------EEEECS---SSS-CEEEEETTTEEEEE--CC
T ss_pred CCCCEEEEEeC-CC--eEEEEECCCCceEEEEECCCCcEE---------EEEEcC---CCC-EEEEEeCCCeEEEE--EC
Confidence 444444443 33 5677788887654333 2222222 234442 444 55566678876666 55
Q ss_pred CCCc-eEeeccCCcceEEe-eeeCCEEEEEEeC
Q 004816 386 FGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 386 ~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~ 416 (729)
.+++ ...+......|..+ ..+++.+++.++.
T Consensus 368 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400 (410)
T ss_dssp TTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred CCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence 5544 45555555667777 4444445555443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-07 Score=101.31 Aligned_cols=247 Identities=11% Similarity=0.038 Sum_probs=147.1
Q ss_pred ceEEEECC-EEEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 148 ~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.+..++++ .++++...++.|.+||+.+ ++ .+.+... ...+...+|+|+|+.|+....+ ..|.+
T Consensus 112 ~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--~~~~~~l~~h----~~~V~~v~~~~~~~~l~sgs~D---------~~i~i 176 (410)
T 1vyh_C 112 TRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTLKGH----TDSVQDISFDHSGKLLASCSAD---------MTIKL 176 (410)
T ss_dssp EEEEECSSSSEEEEEESSSCEEEEETTT--CCCCEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCCCE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCC--CcEEEEEecc----CCcEEEEEEcCCCCEEEEEeCC---------CeEEE
Confidence 34444433 5666777788999999987 44 3445443 3457888999999987665543 34778
Q ss_pred EEcCCCceEEe-eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCce
Q 004816 226 IALNGQNIQVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 304 (729)
Q Consensus 226 ~dl~~g~~~~l-t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (729)
+|+.+++.... ..........+|+|||+.|+..+. ...|.++|+. ++.. ...+.+.. ..+..+.
T Consensus 177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~--------D~~i~~wd~~-~~~~--~~~~~~h~----~~v~~~~ 241 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR--------DKTIKMWEVQ-TGYC--VKTFTGHR----EWVRMVR 241 (410)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET--------TSEEEEEETT-TCCE--EEEEECCS----SCEEEEE
T ss_pred EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeC--------CCeEEEEECC-CCcE--EEEEeCCC----ccEEEEE
Confidence 89988765443 333455678899999998876652 3459999998 6764 44455554 4566788
Q ss_pred eCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeee-------ecCCCCEEEEEEEECC
Q 004816 305 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQ-------SHGEKNLIACSYRQNG 376 (729)
Q Consensus 305 wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~-------~~~~~~~l~~~s~~~g 376 (729)
|+|||++++.... .+. |.++|..+++..... .....+....|.+......... .....+.++++...++
T Consensus 242 ~~~~g~~l~s~s~-D~~--v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 242 PNQDGTLIASCSN-DQT--VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp ECTTSSEEEEEET-TSC--EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred ECCCCCEEEEEcC-CCe--EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 9999995555544 344 555577776544332 2222222233333110000000 0001234667777777
Q ss_pred eEEEEEEECCCCce-EeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 377 RSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 377 ~~~ly~~d~~~g~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
...|| |+.+++. ..+......+..+ ..+++.+++.++.. ..+..+|+.+++
T Consensus 319 ~i~iw--d~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D---~~i~vwd~~~~~ 371 (410)
T 1vyh_C 319 TIKMW--DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD---KTLRVWDYKNKR 371 (410)
T ss_dssp EEEEE--ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT---TEEEEECCTTSC
T ss_pred eEEEE--ECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCc
Confidence 65555 7766653 3444455567776 44555566655543 367777776654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-07 Score=98.39 Aligned_cols=224 Identities=13% Similarity=0.035 Sum_probs=130.5
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.|.++++.++|+....++|+++++++ ++.+.+... .....+.|+|||+.++.. . ..|+++|+
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~--~~~~~~~~~-----~~v~~i~~~~dg~l~v~~-~----------~gl~~~d~ 116 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLAS--GRKTVHALP-----FMGSALAKISDSKQLIAS-D----------DGLFLRDT 116 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTT--TEEEEEECS-----SCEEEEEEEETTEEEEEE-T----------TEEEEEET
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCC--CcEEEEECC-----CcceEEEEeCCCeEEEEE-C----------CCEEEEEC
Confidence 34444568888887778999999987 665554432 235667899999866543 1 24999999
Q ss_pred CCCceEEeeeCC-----CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 229 NGQNIQVLVSGS-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 229 ~~g~~~~lt~~~-----~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
++++.+.+.... .......++|||+ |++....... ......||+++ + ++... +..+. .....+
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~-~~~~~~l~~~~-~--g~~~~--~~~~~-----~~~~~i 184 (326)
T 2ghs_A 117 ATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKA-ETGAGSIYHVA-K--GKVTK--LFADI-----SIPNSI 184 (326)
T ss_dssp TTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTC-CTTCEEEEEEE-T--TEEEE--EEEEE-----SSEEEE
T ss_pred CCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcC-CCCceEEEEEe-C--CcEEE--eeCCC-----cccCCe
Confidence 999887775421 2356779999998 5555432211 11235689888 4 55422 22221 223468
Q ss_pred eeCCCCc-EEEEEecCCCceEEEEEEcC--CC-eE---EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 304 KWSSKGE-LFFVTDRKNGFWNLHKWIES--NN-EV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 304 ~wspDG~-l~~~~~~~~g~~~l~~~d~~--~g-~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
+|+|||+ +|+. +. ....|++++.+ +| +. +.+.... ...+.+ +.+.+. .++.+++.....+
T Consensus 185 ~~s~dg~~lyv~-~~--~~~~I~~~d~~~~~Gl~~~~~~~~~~~~----~~~~~p--~gi~~d----~~G~lwva~~~~~ 251 (326)
T 2ghs_A 185 CFSPDGTTGYFV-DT--KVNRLMRVPLDARTGLPTGKAEVFIDST----GIKGGM--DGSVCD----AEGHIWNARWGEG 251 (326)
T ss_dssp EECTTSCEEEEE-ET--TTCEEEEEEBCTTTCCBSSCCEEEEECT----TSSSEE--EEEEEC----TTSCEEEEEETTT
T ss_pred EEcCCCCEEEEE-EC--CCCEEEEEEcccccCCcccCceEEEECC----CCCCCC--CeeEEC----CCCCEEEEEeCCC
Confidence 9999998 6554 33 23578888875 55 32 2222111 011111 223332 3344555443233
Q ss_pred eEEEEEEECCCCceEeeccCCcceEEe-e--eeCCEEEEEEeCC
Q 004816 377 RSYLGILDDFGHSLSLLDIPFTDIDNI-T--LGNDCLFVEGASG 417 (729)
Q Consensus 377 ~~~ly~~d~~~g~~~~lt~~~~~v~~~-~--~~~~~~~~~~~~~ 417 (729)
.|++++.+++..+.+..+...+..+ . ++++.+++.....
T Consensus 252 --~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 252 --AVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp --EEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred --EEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 6888898766666776665556666 3 2334555544433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-07 Score=95.85 Aligned_cols=226 Identities=12% Similarity=0.169 Sum_probs=131.5
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.|.++++.++|++...++|+++++++ ++.+.+... .....+.++|||+.++. . . ..|+++|+
T Consensus 19 ~w~~~~~~l~~~d~~~~~i~~~d~~~--~~~~~~~~~-----~~~~~i~~~~dG~l~v~-~-~---------~~l~~~d~ 80 (297)
T 3g4e_A 19 VWEEVSNSLLFVDIPAKKVCRWDSFT--KQVQRVTMD-----APVSSVALRQSGGYVAT-I-G---------TKFCALNW 80 (297)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTT--CCEEEEECS-----SCEEEEEEBTTSSEEEE-E-T---------TEEEEEET
T ss_pred eEECCCCEEEEEECCCCEEEEEECCC--CcEEEEeCC-----CceEEEEECCCCCEEEE-E-C---------CeEEEEEC
Confidence 44444568999988888999999987 655544332 34567889999994333 2 1 46999999
Q ss_pred CCCceEEeeeCC-----CeeeeeeeCCCCCeEEEEEecCCCC----CCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 229 NGQNIQVLVSGS-----DFYAFPRMDPRGERMAWIEWHHPNM----PWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 229 ~~g~~~~lt~~~-----~~~~~~~~SPDG~~la~~~~~~~~~----~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
++++.+.+.... ...+...++|||+ |++........ ......||.++.+ ++... +.... ..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~~--~~~~~-----~~ 150 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD--HHVKK--YFDQV-----DI 150 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT--SCEEE--EEEEE-----SB
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC--CCEEE--Eeecc-----cc
Confidence 998887775421 2345678999998 66655432210 0123568888754 44322 22222 23
Q ss_pred ccCceeCCCCc-EEEEEecCCCceEEEEEEc--CCCeEE---EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEE
Q 004816 300 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE--SNNEVL---AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 373 (729)
Q Consensus 300 ~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~--~~g~~~---~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~ 373 (729)
...++|+|||+ +|+.... ...|++++. .+|+.. .+........ ..+.+.+. .++.|++...
T Consensus 151 pngi~~spdg~~lyv~~~~---~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~------~p~g~~~d----~~G~lwva~~ 217 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSL---SYSVDAFDYDLQTGQISNRRSVYKLEKEEQ------IPDGMCID----AEGKLWVACY 217 (297)
T ss_dssp EEEEEECTTSCEEEEEEGG---GTEEEEEEECTTTCCEEEEEEEEECCGGGC------EEEEEEEB----TTSCEEEEEE
T ss_pred ccceEEcCCCCEEEEecCC---CCcEEEEeccCCCCcccCcEEEEECCCCCC------CCCeeEEC----CCCCEEEEEc
Confidence 35789999999 5554433 345777665 566532 2221111001 11233333 3345665554
Q ss_pred ECCeEEEEEEECCCCc-eEeeccCCcceEEe-e--eeCCEEEEEEeCC
Q 004816 374 QNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-T--LGNDCLFVEGASG 417 (729)
Q Consensus 374 ~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~--~~~~~~~~~~~~~ 417 (729)
..+ .|+++++++|+ +..+..+...+..+ . ++++.+++.++..
T Consensus 218 ~~~--~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 218 NGG--RVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp TTT--EEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCC--EEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 333 58889998665 45665555556655 2 3445666655543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-07 Score=101.99 Aligned_cols=285 Identities=8% Similarity=0.013 Sum_probs=160.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEc----CCCCCCC------CcccCCCCCccc--ccccccCCceEEEECC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKE----PAKAGDE------PSDITPKEYAVR--TTAQEYGGGAFRIFGD 155 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~----~~~~~g~------~~~l~~~~~~~~--~~~~~~~~~~~~~~~~ 155 (729)
..+..+.|+| ++.++.+.. .++...+|.. ..+ + ....+...+... ...+.....+..++++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~---~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGE---KNSVARLARIVETDQEG---KKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEE---TBTEEEEEEEEEC---------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred CceEEEEECCCCCcEEEEec---CCceEEEEEEecccCCc---cccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 4567899999 662444443 3577788877 433 3 111111111000 0001112344445433
Q ss_pred -EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 -TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 -~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
.++++...++.|.+|+..+ .....+... ...+..+.|+|||+.|+....+ ..|.++++.+++..
T Consensus 120 ~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNKTG--ALLNVLNFH----RAPIVSVKWNKDGTHIISMDVE---------NVTILWNVISGTVM 184 (425)
T ss_dssp SSEEEEEETTSCEEEEETTS--CEEEEECCC----CSCEEEEEECTTSSEEEEEETT---------CCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCeEEEEeCCC--CeeeeccCC----CccEEEEEECCCCCEEEEEecC---------CeEEEEECCCCcEE
Confidence 3445555678899999654 555555544 3456888999999988766543 45889999887654
Q ss_pred EeeeC-CCe---------------eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccc
Q 004816 235 VLVSG-SDF---------------YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 298 (729)
Q Consensus 235 ~lt~~-~~~---------------~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~ 298 (729)
..... ... .....|+|++. ++... ....|+++|+. +++. ...+.... .
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~g~i~~~d~~-~~~~--~~~~~~~~----~ 248 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPG--------PKGAIFVYQIT-EKTP--TGKLIGHH----G 248 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTE-EEEEC--------GGGCEEEEETT-CSSC--SEEECCCS----S
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEc--------CCCeEEEEEcC-CCce--eeeeccCC----C
Confidence 43322 222 56678999875 44443 23459999998 5654 34444444 5
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
.+..+.|+|||++++.... .+ .|.++|..+++..... .....+. .+.|.+ ++ ++++...++.
T Consensus 249 ~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~---------~~~~~~---~~--~l~~~~~d~~ 311 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASD-DG--TLRIWHGGNGNSQNCFYGHSQSIV---------SASWVG---DD--KVISCSMDGS 311 (425)
T ss_dssp CEEEEEEETTTTEEEEEET-TS--CEEEECSSSBSCSEEECCCSSCEE---------EEEEET---TT--EEEEEETTSE
T ss_pred ceEEEEECCCCCEEEEEcC-CC--EEEEEECCCCccceEecCCCccEE---------EEEECC---CC--EEEEEeCCCc
Confidence 5677899999994444443 34 4666777776543333 2222222 234432 44 5566666665
Q ss_pred EEEEEEECCCCceE-eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 378 SYLGILDDFGHSLS-LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 378 ~~ly~~d~~~g~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
. +++++.+++.. .+......+..+ ..+++.+++.++.. ..++++++.+++
T Consensus 312 i--~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~ 363 (425)
T 1r5m_A 312 V--RLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD---GQVNVYDLKKLN 363 (425)
T ss_dssp E--EEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT---SCEEEEECHHHH
T ss_pred E--EEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC---CeEEEEECCCCc
Confidence 4 45577666644 334445567666 44445555555533 367777776654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-07 Score=95.50 Aligned_cols=207 Identities=12% Similarity=0.104 Sum_probs=125.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccc-cccccCCceEEEECC-EEEEEECCCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRT-TAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~i~~~~~~~~ 165 (729)
..+..+.|+| +..+..... .++...+|..... ....-. ..+. .-|........++.+ ..+++...++
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s---~D~~v~~W~~~~~---~~~~~~----~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSAS---RDKTLISWKLTGD---DQKFGV----PVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEE---TTSEEEEEEEEEE---TTEEEE----EEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceEEEEEccCCCccEEEEec---CCccEEEecCCCC---Cccccc----cceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3456788998 667766655 4577778866432 110000 0000 001222333444433 4566666788
Q ss_pred cEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 166 RLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 166 ~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
.|.+||+.+ ++. +.+... ...+....|+|+|+.|+....+ ..|.++|+.+.....+........
T Consensus 88 ~v~~wd~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~D---------~~i~vwd~~~~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 88 TLRLWDVAT--GETYQRFVGH----KSDVMSVDIDKKASMIISGSRD---------KTIKVWTIKGQCLATLLGHNDWVS 152 (319)
T ss_dssp EEEEEETTT--TEEEEEEECC----SSCEEEEEECTTSCEEEEEETT---------SCEEEEETTSCEEEEECCCSSCEE
T ss_pred EEEEEECCC--CCeeEEEccC----CCcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeEEEEeccCCcEE
Confidence 999999987 543 334433 3456788899999987766553 357888998766666655555667
Q ss_pred eeeeCCCC------CeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecC
Q 004816 245 FPRMDPRG------ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 318 (729)
Q Consensus 245 ~~~~SPDG------~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~ 318 (729)
..+|+|++ ..|+-.+ . ...|.++|+. +++. ...+.+.. ..+..+.|+|||++++....
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~-~-------d~~i~~wd~~-~~~~--~~~~~~h~----~~v~~~~~sp~g~~l~s~~~- 216 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAG-N-------DKMVKAWNLN-QFQI--EADFIGHN----SNINTLTASPDGTLIASAGK- 216 (319)
T ss_dssp EEEECCC------CCEEEEEE-T-------TSCEEEEETT-TTEE--EEEECCCC----SCEEEEEECTTSSEEEEEET-
T ss_pred EEEEccCCCCCCCccEEEEEe-C-------CCEEEEEECC-cchh--heeecCCC----CcEEEEEEcCCCCEEEEEeC-
Confidence 77888854 4565444 2 2348888987 5543 33445554 56677899999995555544
Q ss_pred CCceEEEEEEcCCCeEEEee
Q 004816 319 NGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 319 ~g~~~l~~~d~~~g~~~~l~ 338 (729)
.+ .|.++|+.+++.....
T Consensus 217 dg--~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 217 DG--EIMLWNLAAKKAMYTL 234 (319)
T ss_dssp TC--EEEEEETTTTEEEEEE
T ss_pred CC--eEEEEECCCCcEEEEe
Confidence 34 4666788887654443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-08 Score=107.39 Aligned_cols=290 Identities=11% Similarity=-0.029 Sum_probs=158.6
Q ss_pred ccCceEEcC-CCcEEEEeecC-------CCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEE
Q 004816 90 RLGGTAVDG-HGRLIWLESRP-------TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFS 160 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~-------~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~ 160 (729)
.+..+.|+| ++.++.+.... ..++...+|..... ...+.+.... +.....+..++++ .+++.
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~--~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~ 84 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA--DSEKPIASLQ-------VDSKFNDLDWSHNNKIIAG 84 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSG--GGCSCSCCCC-------CSSCEEEEEECSSSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCC--CCCcEEEEEe-------cCCceEEEEECCCCCeEEE
Confidence 456889999 77676665221 24677778876543 1111111101 1112334444433 34445
Q ss_pred ECCCCcEEEEeCCC---CCCCCeecCCCCCCCceeeecceecCC-CCEEEEEEeccCCCCCCcceEEEEEEcCCCc----
Q 004816 161 NYKDQRLYKHSIDS---KDSSPLPITPDYGEPLVSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQN---- 232 (729)
Q Consensus 161 ~~~~~~l~~~d~~~---~~~~~~~lt~~~~~~~~~~~~~~~SPd-G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~---- 232 (729)
...++.|.+|++.+ +......+... ...+...+|+|| ++.|+.... + ..|+++|+.+++
T Consensus 85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~-d--------g~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANNAINSMARFSNH----SSSVKTVKFNAKQDNVLASGGN-N--------GEIFIWDMNKCTESPS 151 (416)
T ss_dssp EESSSCEEEECCSSTTSCCCEEEECCCS----SSCCCEEEECSSSTTBEEEECS-S--------SCEEBCBTTTTSSCTT
T ss_pred EccCCeEEEeecccccccccchhhccCC----ccceEEEEEcCCCCCEEEEEcC-C--------CeEEEEECCCCccccc
Confidence 55678899999875 10123334433 345678899999 665544433 2 458889998875
Q ss_pred --eE-Ee---eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCC------CCCccccc
Q 004816 233 --IQ-VL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF------DPTIVESP 300 (729)
Q Consensus 233 --~~-~l---t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~------~~~~~~~~ 300 (729)
.. .+ ..........+|+|||..++++... ...|.++|+. +++. ...+... . ..+
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------dg~v~iwd~~-~~~~--~~~~~~~~~~~~~~----~~v 217 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS-------SNFASIWDLK-AKKE--VIHLSYTSPNSGIK----QQL 217 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS-------SSCEEEEETT-TTEE--EEEECCCCCSSCCC----CCE
T ss_pred cccccccccccCCCCCeeEEEeCCCCCcEEEEEcC-------CCCEEEEECC-CCCc--ceEEeccccccccC----Cce
Confidence 21 22 2233456678999995444444422 2349999998 5654 3333332 2 456
Q ss_pred cCceeCCCCc-EEEEEecCCCceEEEEEEcCCC-eEEEeec--cCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 301 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN-EVLAIYS--LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 301 ~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g-~~~~l~~--~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
..+.|+|||. +++......+...|.++|+.++ +...... ....+.. +.|.+ +++.++++...+|
T Consensus 218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~---------~~~s~---~~~~~l~s~~~dg 285 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS---------LDWCH---QDEHLLLSSGRDN 285 (416)
T ss_dssp EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE---------EEECS---SCSSCEEEEESSS
T ss_pred EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeE---------EEeCC---CCCCeEEEEeCCC
Confidence 7789999986 6666554122235667787765 2222221 2222222 33332 3555666777777
Q ss_pred eEEEEEEECCCCce-EeeccCCcceEEe-eeeCC-EEEEEEeCCCCCceEEEEEcCCCc
Q 004816 377 RSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGND-CLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 377 ~~~ly~~d~~~g~~-~~lt~~~~~v~~~-~~~~~-~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
...|| ++.+++. ..+......+..+ ..+++ .+++..+.. ..+.++++.+++
T Consensus 286 ~v~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d---~~i~iw~~~~~~ 339 (416)
T 2pm9_A 286 TVLLW--NPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD---NKIEVQTLQNLT 339 (416)
T ss_dssp EEEEE--CSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS---SEEEEEESCCCC
T ss_pred CEEEe--eCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC---CcEEEEEccCCC
Confidence 65555 6666553 4454445556555 33333 555555433 457777777654
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.6e-09 Score=103.02 Aligned_cols=191 Identities=9% Similarity=-0.026 Sum_probs=110.6
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.|+++||.+++ ...|..++..|. .+|.|+.+|++|.. ...+++.+.++.+. ..+
T Consensus 22 ~~~l~~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~g~~----------------~~~~~~~~~i~~~~-----~~~ 77 (244)
T 2cb9_A 22 GKNLFCFPPISGF--GIYFKDLALQLN-HKAAVYGFHFIEED----------------SRIEQYVSRITEIQ-----PEG 77 (244)
T ss_dssp SSEEEEECCTTCC--GGGGHHHHHHTT-TTSEEEEECCCCST----------------THHHHHHHHHHHHC-----SSS
T ss_pred CCCEEEECCCCCC--HHHHHHHHHHhC-CCceEEEEcCCCHH----------------HHHHHHHHHHHHhC-----CCC
Confidence 4679999997443 355666667665 58999999998631 12455665555442 135
Q ss_pred cEEEEEcChHHHHHHHHHh----CCCcceEEEEeccccChhHHh-----hhcch-hhhhhhhhhcCChhhhhhcCc-ccc
Q 004816 572 RLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADLSMLR-----AETHK-FESRYIDNLVGSEKDYYEKSP-INF 640 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~~~d~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~sp-~~~ 640 (729)
++.++|||+||.+++.++. .+++++++++..+......+. ..... +.......+......+..+.. ...
T Consensus 78 ~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (244)
T 2cb9_A 78 PYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQSITADTENDDSAAYLPEAVRETVMQKKRCYQEYWAQLIN 157 (244)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCCCSCCCCC-------CCSCHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred CEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCCCcccccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7999999999999998886 367888888887653210000 00000 000000000000001111100 123
Q ss_pred cCCCCCCEEEEEeC--CCCCCChHHHHHHHHHHHhC-CCCEEEEEECCCCcc-cCCcccHHHHHHHHHHHHHHHhC
Q 004816 641 VDKFSCPIILFQGL--EDKVVPPDQARKIYKALKEN-GLPVALVEYEGEQHG-FRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 641 ~~~i~~PvL~i~G~--~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~~~~gH~-~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
..++++|+++++|+ +|. ++++... .+... ..+++++++++ +|. +...+......+.+.+|+.+...
T Consensus 158 ~~~i~~Pvl~i~g~~~~D~-~~~~~~~----~w~~~~~~~~~~~~i~g-gH~~~~~~~~~~~~~~~i~~~L~~~~~ 227 (244)
T 2cb9_A 158 EGRIKSNIHFIEAGIQTET-SGAMVLQ----KWQDAAEEGYAEYTGYG-AHKDMLEGEFAEKNANIILNILDKINS 227 (244)
T ss_dssp CSCBSSEEEEEECSBCSCC-CHHHHTT----SSGGGBSSCEEEEECSS-BGGGTTSHHHHHHHHHHHHHHHHTC--
T ss_pred CCCcCCCEEEEEccCcccc-ccccchh----HHHHhcCCCCEEEEecC-ChHHHcChHHHHHHHHHHHHHHhcCcc
Confidence 46788999999999 887 3333222 22221 23689999997 883 33445666777788888876554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-07 Score=99.26 Aligned_cols=239 Identities=8% Similarity=-0.073 Sum_probs=144.7
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCC-------CeecCCCCCCCceeeecceecCC----C---CEEEEEEecc
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSS-------PLPITPDYGEPLVSYADGIFDPR----F---NRYVTVREDR 212 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~-------~~~lt~~~~~~~~~~~~~~~SPd----G---~~l~~~~~~~ 212 (729)
+.+..+++ .++++...++.|.+|++.+ ++ ...+... ...+....|+|+ | +.|+....+
T Consensus 19 i~~~~~~~-~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~g~~~~~l~s~~~d- 90 (397)
T 1sq9_A 19 IFSVSACN-SFTVSCSGDGYLKVWDNKL--LDNENPKDKSYSHFVH----KSGLHHVDVLQAIERDAFELCLVATTSFS- 90 (397)
T ss_dssp EEEEEECS-SEEEEEETTSEEEEEESBC--CTTCCGGGGEEEEECC----TTCEEEEEEEEEEETTTEEEEEEEEEETT-
T ss_pred eEEEEecC-CeEEEEcCCCEEEEEECCC--cccccCCCcceEEecC----CCcEEEEEEecccccCCccccEEEEEcCC-
Confidence 34455556 4566666788999999987 54 3344433 345678889999 8 877666543
Q ss_pred CCCCCCcceEEEEEEcCCCc------eEEeeeC-----CCeeeeeeeC----CCCCe-EEEEEecCCCCCCCCcEEEEEE
Q 004816 213 RQDALNSTTEIVAIALNGQN------IQVLVSG-----SDFYAFPRMD----PRGER-MAWIEWHHPNMPWDKAELWVGY 276 (729)
Q Consensus 213 ~~~~~~~~~~l~~~dl~~g~------~~~lt~~-----~~~~~~~~~S----PDG~~-la~~~~~~~~~~~~~~~l~~~d 276 (729)
..|+++++.+++ .+.+... ........|+ |||+. |+.... ...|+++|
T Consensus 91 --------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--------dg~i~iwd 154 (397)
T 1sq9_A 91 --------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV--------KGTTYIWK 154 (397)
T ss_dssp --------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET--------TSCEEEEE
T ss_pred --------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC--------CCcEEEEe
Confidence 358888888776 4455443 2567788999 99998 776552 23488888
Q ss_pred ecCC------CCeee---e-EEe------cCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeecc
Q 004816 277 ISEN------GDVYK---R-VCV------AGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL 340 (729)
Q Consensus 277 ~~~~------g~~~~---~-~~~------~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~ 340 (729)
+. + ++... . .+. .... ..+..+.|+||| +++.... .+ .|.++|+.+++.......
T Consensus 155 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~-~l~~~~~-dg--~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 155 FH-PFADESNSLTLNWSPTLELQGTVESPMTPS----QFATSVDISERG-LIATGFN-NG--TVQISELSTLRPLYNFES 225 (397)
T ss_dssp EE-SSSSHHHHTTTCCCCEEEEEEEECCSSSSC----CCCCEEEECTTS-EEEEECT-TS--EEEEEETTTTEEEEEEEC
T ss_pred CC-ccccccccceeeccCcceeeeeeccccCCC----CCceEEEECCCc-eEEEEeC-CC--cEEEEECCCCceeEEEec
Confidence 87 4 33211 0 121 1222 456788999999 6666544 34 577778887765544432
Q ss_pred -------CccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-Eeecc-------------CCcc
Q 004816 341 -------DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDI-------------PFTD 399 (729)
Q Consensus 341 -------~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~~lt~-------------~~~~ 399 (729)
...+... .|.+ +++.|+..+...+...|.++|+.+++. ..+.. ....
T Consensus 226 ~~~h~~~~~~i~~i---------~~~~---~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 226 QHSMINNSNSIRSV---------KFSP---QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp CC---CCCCCEEEE---------EECS---STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC
T ss_pred cccccccCCccceE---------EECC---CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc
Confidence 3233333 3332 666666555544446777888877664 34444 3455
Q ss_pred eEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 400 IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 400 v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+..+ ..+++.+++.++.. ..++++|+.+++.
T Consensus 294 v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~ 325 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGWD---GKLRFWDVKTKER 325 (397)
T ss_dssp EEEEEECSSSSEEEEEETT---SEEEEEETTTTEE
T ss_pred EEEEEECCCCCEEEEEeCC---CeEEEEEcCCCce
Confidence 6666 44455555555533 4788888887753
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-07 Score=97.20 Aligned_cols=212 Identities=11% Similarity=0.025 Sum_probs=117.9
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCce--EEEE---CC---EEEEEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGA--FRIF---GD---TVIFSN 161 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~---~~---~i~~~~ 161 (729)
.+..+.|+| .++.+.. .+|...+|............+.. .-..+.....+ |.++ ++ .++++.
T Consensus 18 ~i~~~~~~~--~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCS---GDGYLKVWDNKLLDNENPKDKSY-----SHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp CEEEEEECS--SEEEEEE---TTSEEEEEESBCCTTCCGGGGEE-----EEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred CeEEEEecC--CeEEEEc---CCCEEEEEECCCcccccCCCcce-----EEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 456788885 4444443 35777788765441000000000 00011122233 4444 13 556666
Q ss_pred CCCCcEEEEeCCCCCCC------CeecCCCCCC-Cceeeecceec----CCCCE-EEEEEeccCCCCCCcceEEEEEEcC
Q 004816 162 YKDQRLYKHSIDSKDSS------PLPITPDYGE-PLVSYADGIFD----PRFNR-YVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 162 ~~~~~l~~~d~~~~~~~------~~~lt~~~~~-~~~~~~~~~~S----PdG~~-l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
..++.|++|++.+ ++ ...+...... ....+....|+ |+|+. |+....+ ..|+++|+.
T Consensus 88 ~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~ 156 (397)
T 1sq9_A 88 SFSGDLLFYRITR--EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK---------GTTYIWKFH 156 (397)
T ss_dssp ETTSCEEEEEEEE--CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT---------SCEEEEEEE
T ss_pred cCCCCEEEEEccC--CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC---------CcEEEEeCC
Confidence 6788899999987 54 3444433100 01456788999 99998 6655443 357777877
Q ss_pred C------Cc-eE-----Eeee-------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec
Q 004816 230 G------QN-IQ-----VLVS-------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA 290 (729)
Q Consensus 230 ~------g~-~~-----~lt~-------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~ 290 (729)
+ ++ .. .+.. .........|+||| .|+... ....|.++|+. +++. ...+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~--------~dg~i~i~d~~-~~~~--~~~~~ 224 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF--------NNGTVQISELS-TLRP--LYNFE 224 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC--------TTSEEEEEETT-TTEE--EEEEE
T ss_pred ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe--------CCCcEEEEECC-CCce--eEEEe
Confidence 6 33 22 3421 34456678999999 666544 23459999998 5654 33444
Q ss_pred C---C---CCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 291 G---F---DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 291 ~---~---~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
. . . ..+..+.|+|||++++......+...|.++|+.+++.....
T Consensus 225 ~~~~h~~~~----~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~ 274 (397)
T 1sq9_A 225 SQHSMINNS----NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 274 (397)
T ss_dssp CCC---CCC----CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred ccccccccC----CccceEEECCCCCEEEEEecCCCCceEEEEECCCCccccee
Confidence 4 3 3 55678899999994444433133467888898877654433
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-09 Score=103.94 Aligned_cols=185 Identities=11% Similarity=0.052 Sum_probs=104.5
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.|+++||.+++ ...|..++..|.. |.|+.+|++|.+ . ..+|+.+.++.+.. .+
T Consensus 17 ~~~l~~~hg~~~~--~~~~~~~~~~l~~--~~v~~~d~~g~~---~-------------~~~~~~~~i~~~~~-----~~ 71 (230)
T 1jmk_C 17 EQIIFAFPPVLGY--GLMYQNLSSRLPS--YKLCAFDFIEEE---D-------------RLDRYADLIQKLQP-----EG 71 (230)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHCTT--EEEEEECCCCST---T-------------HHHHHHHHHHHHCC-----SS
T ss_pred CCCEEEECCCCCc--hHHHHHHHHhcCC--CeEEEecCCCHH---H-------------HHHHHHHHHHHhCC-----CC
Confidence 3679999997433 3556667777754 999999998632 1 13566666665521 35
Q ss_pred cEEEEEcChHHHHHHHHHh-C---CCcceEEEEeccccChh--HHhhh-cchhhhhhhhh------hcCC--hh------
Q 004816 572 RLCITGGSAGGYTTLAALA-F---RDTFKAGASLYGVADLS--MLRAE-THKFESRYIDN------LVGS--EK------ 630 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~---~~~~~a~v~~~~~~d~~--~~~~~-~~~~~~~~~~~------~~~~--~~------ 630 (729)
++.++|||+||.+++.++. . +++++++++..+..... .+... ........... .... ..
T Consensus 72 ~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (230)
T 1jmk_C 72 PLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQKT 151 (230)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGSHHHHHHHHHHH
T ss_pred CeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCCCCcccccccccHHHHHHHHHhcChhhhhhhhHHHHHHHHHHH
Confidence 7999999999999998886 3 46788888877543210 00000 00000000000 0000 00
Q ss_pred -hhhhcCc-ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHh-CCCCEEEEEECCCCcc-cCCcccHHHHHHHHHHH
Q 004816 631 -DYYEKSP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE-NGLPVALVEYEGEQHG-FRKAENIKFTLEQQMVF 706 (729)
Q Consensus 631 -~~~~~sp-~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~-~g~~~~~~~~~~~gH~-~~~~~~~~~~~~~~~~f 706 (729)
.+..+.. .....++++|+++++|++|..++. ... .+.+ ...+++++.+++ +|. +...++.....+.+.+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~-~~~----~w~~~~~~~~~~~~i~g-~H~~~~~~~~~~~~~~~i~~~ 225 (230)
T 1jmk_C 152 HAFYSYYVNLISTGQVKADIDLLTSGADFDIPE-WLA----SWEEATTGAYRMKRGFG-THAEMLQGETLDRNAGILLEF 225 (230)
T ss_dssp HHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCT-TEE----CSGGGBSSCEEEEECSS-CGGGTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccEEEEEeCCCCCCcc-ccc----hHHHhcCCCeEEEEecC-ChHHHcCcHhHHHHHHHHHHH
Confidence 0111100 023467889999999999998862 221 2222 223679999997 882 22334444555555555
Q ss_pred H
Q 004816 707 F 707 (729)
Q Consensus 707 l 707 (729)
+
T Consensus 226 l 226 (230)
T 1jmk_C 226 L 226 (230)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-07 Score=95.94 Aligned_cols=236 Identities=11% Similarity=-0.028 Sum_probs=141.0
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
...++++++++....++.|.++|+.+ ++. ..+... .....++++||| +| |+.... ...|+++|
T Consensus 48 ~i~~~~~~lyv~~~~~~~v~viD~~t--~~~~~~i~~~-----~~p~~i~~~~~g-~l-yv~~~~-------~~~v~~iD 111 (328)
T 3dsm_A 48 SMVIRDGIGWIVVNNSHVIFAIDINT--FKEVGRITGF-----TSPRYIHFLSDE-KA-YVTQIW-------DYRIFIIN 111 (328)
T ss_dssp EEEEETTEEEEEEGGGTEEEEEETTT--CCEEEEEECC-----SSEEEEEEEETT-EE-EEEEBS-------CSEEEEEE
T ss_pred EEEEECCEEEEEEcCCCEEEEEECcc--cEEEEEcCCC-----CCCcEEEEeCCC-eE-EEEECC-------CCeEEEEE
Confidence 35567888888887778999999998 554 455432 223667789998 55 444422 25799999
Q ss_pred cCCCceEE-eeeCCC-----eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 228 LNGQNIQV-LVSGSD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 228 l~~g~~~~-lt~~~~-----~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
+++++... +.-+.. ...+.++ ++++|+...+. ....|.++|++ +++... .+... ....
T Consensus 112 ~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~------~~~~v~viD~~-t~~~~~--~i~~g-----~~p~ 175 (328)
T 3dsm_A 112 PKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS------YQNRILKIDTE-TDKVVD--ELTIG-----IQPT 175 (328)
T ss_dssp TTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT------TCCEEEEEETT-TTEEEE--EEECS-----SCBC
T ss_pred CCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC------CCCEEEEEECC-CCeEEE--EEEcC-----CCcc
Confidence 99987654 332220 3344566 67778666531 13469999998 676532 22211 2346
Q ss_pred CceeCCCCcEEEEEecCCC-------ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEE
Q 004816 302 EPKWSSKGELFFVTDRKNG-------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 374 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g-------~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~ 374 (729)
.+.++|||++++....... ...|+++|+++++.......... . ....+.+.+ +++.+|+...
T Consensus 176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g--~-----~p~~la~~~---d~~~lyv~~~- 244 (328)
T 3dsm_A 176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG--D-----WPSEVQLNG---TRDTLYWINN- 244 (328)
T ss_dssp CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT--C-----CCEEEEECT---TSCEEEEESS-
T ss_pred ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC--C-----CceeEEEec---CCCEEEEEcc-
Confidence 7889999997666543101 25799999998876543321100 0 112344543 6777776532
Q ss_pred CCeEEEEEEECCCCceEe---eccCCcceEEe-ee-eCCEEEEEEeCC-CCCceEEEEEcCCCc
Q 004816 375 NGRSYLGILDDFGHSLSL---LDIPFTDIDNI-TL-GNDCLFVEGASG-VEPSSVAKVTLDDHK 432 (729)
Q Consensus 375 ~g~~~ly~~d~~~g~~~~---lt~~~~~v~~~-~~-~~~~~~~~~~~~-~~~~~ly~~d~~~~~ 432 (729)
.|+++|.+++++.. ++........+ .+ +++.+++..... .....+++++.+ |+
T Consensus 245 ----~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 245 ----DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp ----SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred ----EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 79999998887532 11112234445 33 355555543111 234568999987 54
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-07 Score=97.64 Aligned_cols=274 Identities=9% Similarity=-0.038 Sum_probs=152.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCC----CcccCCCCCcccccccccCCce--EEEECCEEEEEE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDE----PSDITPKEYAVRTTAQEYGGGA--FRIFGDTVIFSN 161 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~----~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~ 161 (729)
..+.++.|+| ++.++... .++...+|..... + .+.+.. +.....+ |.+++...+++.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~----~d~~v~iw~~~~~---~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITS----WDGSLTVYKFDIQ---AKNVDLLQSLR---------YKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEE----TTSEEEEEEEETT---TTEEEEEEEEE---------CSSCEEEEEEEESSSEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEc----CCCeEEEEEeCCC---Cccccceeeee---------cCCceEEEEECCCCCcEEEEE
Confidence 3567889999 66555433 3577777776543 2 111111 1112233 444444155556
Q ss_pred CCCCcEEEEeC-CCCCCCCeecCC--CCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC--------
Q 004816 162 YKDQRLYKHSI-DSKDSSPLPITP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-------- 230 (729)
Q Consensus 162 ~~~~~l~~~d~-~~~~~~~~~lt~--~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-------- 230 (729)
..++.|++|++ .+ +....+.. . ...+....|+| ++.|+....+ ..|.++|+.+
T Consensus 76 ~~dg~i~~wd~~~~--~~~~~~~~~~~----~~~v~~l~~~~-~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~ 139 (342)
T 1yfq_A 76 TVQGEILKVDLIGS--PSFQALTNNEA----NLGICRICKYG-DDKLIAASWD---------GLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp ETTSCEEEECSSSS--SSEEECBSCCC----CSCEEEEEEET-TTEEEEEETT---------SEEEEECHHHHTTBCEEE
T ss_pred cCCCeEEEEEeccC--CceEeccccCC----CCceEEEEeCC-CCEEEEEcCC---------CeEEEEcccccccccccc
Confidence 67889999999 87 76666665 4 34567889999 8877666543 4688888875
Q ss_pred -CceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCC-CCeeeeEEecCCCCCccccccCceeCC-
Q 004816 231 -QNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIVESPTEPKWSS- 307 (729)
Q Consensus 231 -g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~-g~~~~~~~~~~~~~~~~~~~~~~~wsp- 307 (729)
++...............|+||+ |+... ....|.++|+. + +............ ..+..+.|+|
T Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~--l~~~~--------~d~~i~i~d~~-~~~~~~~~~~~~~~~----~~i~~i~~~~~ 204 (342)
T 1yfq_A 140 KNLNSNNTKVKNKIFTMDTNSSR--LIVGM--------NNSQVQWFRLP-LCEDDNGTIEESGLK----YQIRDVALLPK 204 (342)
T ss_dssp EESCSSSSSSCCCEEEEEECSSE--EEEEE--------STTEEEEEESS-CCTTCCCEEEECSCS----SCEEEEEECSG
T ss_pred cCCeeeEEeeCCceEEEEecCCc--EEEEe--------CCCeEEEEECC-ccccccceeeecCCC----CceeEEEECCC
Confidence 4432222244556778999997 55444 23459999998 5 4422223333333 4567789999
Q ss_pred CCcEEEEEecCCCceEEEEEEcC-----CCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEE
Q 004816 308 KGELFFVTDRKNGFWNLHKWIES-----NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 382 (729)
Q Consensus 308 DG~l~~~~~~~~g~~~l~~~d~~-----~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~ 382 (729)
||+++++... .|...||.++.. ......+...........-......+.|.+ +++ ++++...+|...+
T Consensus 205 ~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~-~l~~~~~dg~i~v-- 277 (342)
T 1yfq_A 205 EQEGYACSSI-DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP---RHK-FLYTAGSDGIISC-- 277 (342)
T ss_dssp GGCEEEEEET-TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT---TTC-CEEEEETTSCEEE--
T ss_pred CCCEEEEEec-CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC---CCC-EEEEecCCceEEE--
Confidence 9985555555 566666666554 122223322111000000000112334442 444 4455556675444
Q ss_pred EECCCCce-EeeccC-CcceEEeeeeCCEEEEEEeCC
Q 004816 383 LDDFGHSL-SLLDIP-FTDIDNITLGNDCLFVEGASG 417 (729)
Q Consensus 383 ~d~~~g~~-~~lt~~-~~~v~~~~~~~~~~~~~~~~~ 417 (729)
+|+.+++. ..+... ...+..+. .++.+++.++..
T Consensus 278 wd~~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~s~D 313 (342)
T 1yfq_A 278 WNLQTRKKIKNFAKFNEDSVVKIA-CSDNILCLATSD 313 (342)
T ss_dssp EETTTTEEEEECCCCSSSEEEEEE-ECSSEEEEEEEC
T ss_pred EcCccHhHhhhhhcccCCCceEec-CCCCeEEEEecC
Confidence 57776664 344444 55566666 555555555543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-07 Score=97.43 Aligned_cols=233 Identities=11% Similarity=0.022 Sum_probs=134.2
Q ss_pred ceEEEECC-EEEEEECCCCcEEEEeCCCCCC---CCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDS---SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 148 ~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~---~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
.+..++++ .+++....++.|++|++.+ + ....+... ...+....|+|||+.|+....+ ..|
T Consensus 12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~~~~~d---------g~i 76 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICPNNHEVHIYEKSG--NKWVQVHELKEH----NGQVTGVDWAPDSNRIVTCGTD---------RNA 76 (372)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEET--TEEEEEEEEECC----SSCEEEEEEETTTTEEEEEETT---------SCE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCC--CcEEeeeeecCC----CCcccEEEEeCCCCEEEEEcCC---------CeE
Confidence 33444433 3455555678899999987 5 33444433 3456788999999988766543 358
Q ss_pred EEEEcCCCceEEe---eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe-ee-eEEecCCCCCccc
Q 004816 224 VAIALNGQNIQVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YK-RVCVAGFDPTIVE 298 (729)
Q Consensus 224 ~~~dl~~g~~~~l---t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~-~~-~~~~~~~~~~~~~ 298 (729)
.++++.+++.... ...........|+|||++|+.... ...|.++|+. .+.. .. ........ .
T Consensus 77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------d~~v~i~d~~-~~~~~~~~~~~~~~~~----~ 143 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG--------SRVISICYFE-QENDWWVCKHIKKPIR----S 143 (372)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET--------TSSEEEEEEE-TTTTEEEEEEECTTCC----S
T ss_pred EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC--------CCEEEEEEec-CCCcceeeeeeecccC----C
Confidence 8888887764333 233445677899999999887762 2338888887 4441 11 12223333 5
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEEEcC------------------CCeEEE-eeccCccccCCcccccCcceeee
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIES------------------NNEVLA-IYSLDAEFSRPLWVFGINSYEII 359 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~------------------~g~~~~-l~~~~~~~~~~~w~~~~~~~~~l 359 (729)
.+..+.|+|||++++.... .+. |.++|.. .++... +......+. .+.|.
T Consensus 144 ~i~~~~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~ 211 (372)
T 1k8k_C 144 TVLSLDWHPNSVLLAAGSC-DFK--CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH---------GVCFS 211 (372)
T ss_dssp CEEEEEECTTSSEEEEEET-TSC--EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE---------EEEEC
T ss_pred CeeEEEEcCCCCEEEEEcC-CCC--EEEEEcccccccccccccccccccchhhheEecCCCCCeEE---------EEEEC
Confidence 5678899999995555444 454 4445532 333322 222222222 23443
Q ss_pred eecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 360 QSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 360 ~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
+ +++ ++++...+|...+| |+.+++ +..+......+..+ ..+++.+++.+ .+ ..++.+++..
T Consensus 212 ~---~~~-~l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d--~~i~i~~~~~ 274 (372)
T 1k8k_C 212 A---NGS-RVAWVSHDSTVCLA--DADKKMAVATLASETLPLLAVTFITESSLVAAG--HD--CFPVLFTYDS 274 (372)
T ss_dssp S---SSS-EEEEEETTTEEEEE--EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE--TT--SSCEEEEEET
T ss_pred C---CCC-EEEEEeCCCEEEEE--ECCCCceeEEEccCCCCeEEEEEecCCCEEEEE--eC--CeEEEEEccC
Confidence 2 454 45555567765555 665554 44555555567776 55566665544 33 2444555555
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.89 E-value=5.5e-07 Score=92.23 Aligned_cols=254 Identities=12% Similarity=0.064 Sum_probs=144.1
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
..+.++.|+| ++.++- .. .+|...+|..... ...+.+......+. ...|.++++ .+++...++.|
T Consensus 14 ~~V~~~~fsp~~~~l~s-~~---~dg~v~lWd~~~~--~~~~~~~~~~~~v~-------~~~~~~~~~-~l~s~s~d~~i 79 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLT-TL---YSGRVELWNYETQ--VEVRSIQVTETPVR-------AGKFIARKN-WIIVGSDDFRI 79 (304)
T ss_dssp SCEEEEEECSSSSEEEE-EE---TTSEEEEEETTTT--EEEEEEECCSSCEE-------EEEEEGGGT-EEEEEETTSEE
T ss_pred CceEEEEECCCCCEEEE-Ec---CCCcEEEEECCCC--ceeEEeeccCCcEE-------EEEEeCCCC-EEEEECCCCEE
Confidence 4567899999 655543 32 4677788876433 11111211110110 122333333 45555678899
Q ss_pred EEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-eEEe-eeCCCeee
Q 004816 168 YKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQVL-VSGSDFYA 244 (729)
Q Consensus 168 ~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-~~~l-t~~~~~~~ 244 (729)
.+||+.+ ++. ..+... ...+...+|+|+++.|+....+ ..|.++|+.++. ..+. ........
T Consensus 80 ~vwd~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~~~~~~~~~~~~h~~~v~ 144 (304)
T 2ynn_A 80 RVFNYNT--GEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENNWALEQTFEGHEHFVM 144 (304)
T ss_dssp EEEETTT--CCEEEEEECC----SSCEEEEEECSSSSEEEEEETT---------SCEEEEEGGGTTEEEEEECCCCSCEE
T ss_pred EEEECCC--CcEEEEEeCC----CCcEEEEEEcCCCCEEEEECCC---------CeEEEEECCCCcchhhhhcccCCcEE
Confidence 9999987 543 344433 3457788999999987655543 358888988763 3333 33445567
Q ss_pred eeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC--CCcEEEEEecCCCc
Q 004816 245 FPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDRKNGF 321 (729)
Q Consensus 245 ~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp--DG~l~~~~~~~~g~ 321 (729)
..+|+| |++.|+-.+. ...|.++|+. .+.. ...+..+.. ..+....|+| |+++++.... .+
T Consensus 145 ~v~~~p~~~~~l~sgs~--------D~~v~iwd~~-~~~~-~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~s~-D~- 208 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCL--------DRTVKVWSLG-QSTP-NFTLTTGQE----RGVNYVDYYPLPDKPYMITASD-DL- 208 (304)
T ss_dssp EEEECTTCTTEEEEEET--------TSEEEEEETT-CSSC-SEEEECCCT----TCEEEEEECCSTTCCEEEEEET-TS-
T ss_pred EEEECCCCCCEEEEEeC--------CCeEEEEECC-CCCc-cceeccCCc----CcEEEEEEEEcCCCCEEEEEcC-CC-
Confidence 789999 6777765552 3458899987 4442 123333333 3344566765 6665555544 34
Q ss_pred eEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-EeeccCCcc
Q 004816 322 WNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTD 399 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~~lt~~~~~ 399 (729)
.|.++|+.+++..... .....+.. +.|.| ++. ++++...+|...|| |..+++. +.+..+...
T Consensus 209 -~i~iWd~~~~~~~~~~~~h~~~v~~---------~~~~p---~~~-~l~s~s~Dg~i~iW--d~~~~~~~~~~~~~~~~ 272 (304)
T 2ynn_A 209 -TIKIWDYQTKSCVATLEGHMSNVSF---------AVFHP---TLP-IIISGSEDGTLKIW--NSSTYKVEKTLNVGLER 272 (304)
T ss_dssp -EEEEEETTTTEEEEEEECCSSCEEE---------EEECS---SSS-EEEEEETTSCEEEE--ETTTCCEEEEECCSSSS
T ss_pred -eEEEEeCCCCccceeeCCCCCCEEE---------EEECC---CCC-EEEEEcCCCeEEEE--ECCCCceeeeccCCCcc
Confidence 4666788877654333 22222222 23332 444 56677778877776 6666654 445444445
Q ss_pred eEEe
Q 004816 400 IDNI 403 (729)
Q Consensus 400 v~~~ 403 (729)
+..+
T Consensus 273 ~~~~ 276 (304)
T 2ynn_A 273 SWCI 276 (304)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.6e-07 Score=94.45 Aligned_cols=270 Identities=10% Similarity=0.030 Sum_probs=151.6
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcE
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l 167 (729)
..+..+.|+|++.+..+.. .++...+|..... +....++. +........++++ ..+++...++.+
T Consensus 56 ~~v~~~~~s~d~~~l~s~s---~Dg~v~iWd~~~~---~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSAS---QDGKLIIWDSYTT---NKVHAIPL--------RSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp SCEEEEEECTTSSEEEEEE---TTTEEEEEETTTC---CEEEEEEC--------SSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred CceEEEEECCCCCEEEEEe---CCCcEEEEECCCC---CcceEeec--------CCccEEEEEECCCCCEEEEEeCCCeE
Confidence 4567889999444444443 4577777865432 22111111 1111222333322 345555567889
Q ss_pred EEEeCCCCCCCCe---ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe-eeCCCee
Q 004816 168 YKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL-VSGSDFY 243 (729)
Q Consensus 168 ~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l-t~~~~~~ 243 (729)
.+|++.++.+..+ .+... ...+....|+|+++ ++....+ ..|.++|+.+++.... .......
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~-l~s~s~d---------~~i~~wd~~~~~~~~~~~~h~~~v 187 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGH----TGYLSCCRFLDDNQ-IVTSSGD---------TTCALWDIETGQQTTTFTGHTGDV 187 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECC----SSCEEEEEEEETTE-EEEEETT---------SCEEEEETTTTEEEEEECCCSSCE
T ss_pred EEEECccCCCcceeEEEecCC----CccEEEEEECCCCc-EEEEECC---------CcEEEEECCCCcEEEEEcCCCCce
Confidence 9999876101111 22222 23456677899886 4444332 4588899998876543 3344566
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceE
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 323 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~ 323 (729)
...+|+|||+.|+..+. ...|.++|+. ++.. ...+.+.. ..+..++|+|||+++++... .+.
T Consensus 188 ~~~~~~~~~~~l~sg~~--------d~~v~~wd~~-~~~~--~~~~~~h~----~~v~~v~~~p~~~~l~s~s~-d~~-- 249 (340)
T 1got_B 188 MSLSLAPDTRLFVSGAC--------DASAKLWDVR-EGMC--RQTFTGHE----SDINAICFFPNGNAFATGSD-DAT-- 249 (340)
T ss_dssp EEEEECTTSSEEEEEET--------TSCEEEEETT-TCSE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TSC--
T ss_pred EEEEECCCCCEEEEEeC--------CCcEEEEECC-CCee--EEEEcCCc----CCEEEEEEcCCCCEEEEEcC-CCc--
Confidence 78899999998775552 2348899988 6654 44555554 56678899999995555444 343
Q ss_pred EEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcceEE
Q 004816 324 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDN 402 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~ 402 (729)
|.++|+.+++.......... ......+.|.+ ++ .++++...+|...|| |..+++ ...+......|..
T Consensus 250 v~iwd~~~~~~~~~~~~~~~------~~~v~~~~~s~---~g-~~l~~g~~d~~i~vw--d~~~~~~~~~~~~h~~~v~~ 317 (340)
T 1got_B 250 CRLFDLRADQELMTYSHDNI------ICGITSVSFSK---SG-RLLLAGYDDFNCNVW--DALKADRAGVLAGHDNRVSC 317 (340)
T ss_dssp EEEEETTTTEEEEEECCTTC------CSCEEEEEECT---TS-SEEEEEETTSEEEEE--ETTTCCEEEEEECCSSCEEE
T ss_pred EEEEECCCCcEEEEEccCCc------ccceEEEEECC---CC-CEEEEECCCCeEEEE--EcccCcEeeEeecCCCcEEE
Confidence 55668777654433321110 01122344542 44 455666667765555 655554 3455555566777
Q ss_pred e-eeeCCEEEEEEeC
Q 004816 403 I-TLGNDCLFVEGAS 416 (729)
Q Consensus 403 ~-~~~~~~~~~~~~~ 416 (729)
+ ..+++.+++.++.
T Consensus 318 ~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 318 LGVTDDGMAVATGSW 332 (340)
T ss_dssp EEECTTSSCEEEEET
T ss_pred EEEcCCCCEEEEEcC
Confidence 7 4455555555553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-07 Score=110.61 Aligned_cols=254 Identities=11% Similarity=0.072 Sum_probs=149.7
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
..+.++.|+| +..++... .+|...+|....+ .....+......+. ...|++++..++.. ..++.|
T Consensus 14 ~~v~~i~~sp~~~~la~~~----~~g~v~iwd~~~~--~~~~~~~~~~~~v~-------~~~~s~~~~~l~~~-~~dg~i 79 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTL----YSGRVEIWNYETQ--VEVRSIQVTETPVR-------AGKFIARKNWIIVG-SDDFRI 79 (814)
T ss_dssp SCEEEEEECSSSSEEEEEE----TTSEEEEEETTTT--EEEEEEECCSSCEE-------EEEEEGGGTEEEEE-ETTSEE
T ss_pred CceEEEEECCCCCEEEEEe----CCCEEEEEECCCC--ceEEEEecCCCcEE-------EEEEeCCCCEEEEE-eCCCeE
Confidence 4678899999 77776654 3577777765433 11222221110111 12344445455544 457899
Q ss_pred EEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC-ceE-EeeeCCCeee
Q 004816 168 YKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-NIQ-VLVSGSDFYA 244 (729)
Q Consensus 168 ~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g-~~~-~lt~~~~~~~ 244 (729)
.+|++.+ ++ ...+... ...+...+|+|||++|+....+ ..|.++++.++ ... .+........
T Consensus 80 ~vw~~~~--~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 80 RVFNYNT--GEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENNWALEQTFEGHEHFVM 144 (814)
T ss_dssp EEEETTT--CCEEEEEECC----SSCEEEEEECSSSSEEEEEETT---------SEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred EEEECCC--CcEEEEEecC----CCCEEEEEEeCCCCEEEEEcCC---------CEEEEEECCCCceEEEEEcCCCCcEE
Confidence 9999987 44 3444433 3456788999999988766543 46888898876 333 3344445677
Q ss_pred eeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC--CCcEEEEEecCCCc
Q 004816 245 FPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDRKNGF 321 (729)
Q Consensus 245 ~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp--DG~l~~~~~~~~g~ 321 (729)
..+|+| ||+.|+... ....|.++|+. ++... ..+..... ..+..+.|+| ||.+++.... .+
T Consensus 145 ~~~~~p~~~~~l~~~~--------~dg~v~vwd~~-~~~~~-~~~~~~~~----~~v~~~~~~~~~~~~~l~~~~~-dg- 208 (814)
T 3mkq_A 145 CVAFNPKDPSTFASGC--------LDRTVKVWSLG-QSTPN-FTLTTGQE----RGVNYVDYYPLPDKPYMITASD-DL- 208 (814)
T ss_dssp EEEEETTEEEEEEEEE--------TTSEEEEEETT-CSSCS-EEEECCCT----TCCCEEEECCSTTCCEEEEECT-TS-
T ss_pred EEEEEcCCCCEEEEEe--------CCCeEEEEECC-CCcce-eEEecCCC----CCEEEEEEEECCCCCEEEEEeC-CC-
Confidence 889999 888887666 23459999987 55432 22333332 4556788998 8885555444 34
Q ss_pred eEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-EeeccCCcc
Q 004816 322 WNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTD 399 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~~lt~~~~~ 399 (729)
.|.++|..+++..... .....+....|++ ++. ++++...+|...+| ++.+++. ..+..+...
T Consensus 209 -~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~------------~~~-~l~~~~~dg~v~vw--d~~~~~~~~~~~~~~~~ 272 (814)
T 3mkq_A 209 -TIKIWDYQTKSCVATLEGHMSNVSFAVFHP------------TLP-IIISGSEDGTLKIW--NSSTYKVEKTLNVGLER 272 (814)
T ss_dssp -EEEEEETTTTEEEEEEECCSSCEEEEEECS------------SSS-EEEEEETTSCEEEE--ETTTCSEEEEECCSSSS
T ss_pred -EEEEEECCCCcEEEEEcCCCCCEEEEEEcC------------CCC-EEEEEeCCCeEEEE--ECCCCcEEEEeecCCCc
Confidence 5777788777654433 2232333334443 444 55555566765555 6666554 344444445
Q ss_pred eEEe
Q 004816 400 IDNI 403 (729)
Q Consensus 400 v~~~ 403 (729)
+..+
T Consensus 273 v~~~ 276 (814)
T 3mkq_A 273 SWCI 276 (814)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5555
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-08 Score=103.26 Aligned_cols=197 Identities=8% Similarity=-0.090 Sum_probs=121.6
Q ss_pred eEEEECCEEEEEE-CCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 149 AFRIFGDTVIFSN-YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 149 ~~~~~~~~i~~~~-~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
+|++++..++... ..++.|.+||+.+ ++....... ...+.+.+|||||++|+...+ ..+.+++
T Consensus 140 ~fSpDg~~la~as~~~d~~i~iwd~~~--~~~~~~~~~----~~~V~~v~fspdg~~l~s~s~----------~~~~~~~ 203 (365)
T 4h5i_A 140 YISREGTVAAIASSKVPAIMRIIDPSD--LTEKFEIET----RGEVKDLHFSTDGKVVAYITG----------SSLEVIS 203 (365)
T ss_dssp EECTTSSCEEEEESCSSCEEEEEETTT--TEEEEEEEC----SSCCCEEEECTTSSEEEEECS----------SCEEEEE
T ss_pred EEcCCCCEEEEEECCCCCEEEEeECCC--CcEEEEeCC----CCceEEEEEccCCceEEeccc----------eeEEEEE
Confidence 4555555665544 3567899999987 543332222 234688899999998877653 2367778
Q ss_pred cCCCceEE-eee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCee--eeEEecCCCCCccccccC
Q 004816 228 LNGQNIQV-LVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY--KRVCVAGFDPTIVESPTE 302 (729)
Q Consensus 228 l~~g~~~~-lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~--~~~~~~~~~~~~~~~~~~ 302 (729)
..+++... .+. ........+|||||+.|+..+.+.. ....++.+++. .+... ....+.+.. ..+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~----~~~~i~~~~~~-~~~~~~~~~~~~~~~~----~~V~~ 274 (365)
T 4h5i_A 204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG----KGIVLTKISIK-SGNTSVLRSKQVTNRF----KGITS 274 (365)
T ss_dssp TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS----CCEEEEEEEEE-TTEEEEEEEEEEESSC----SCEEE
T ss_pred eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc----ceeEEeecccc-cceecceeeeeecCCC----CCeEe
Confidence 77766433 222 2334567899999999988775442 23457788877 44322 122344444 45677
Q ss_pred ceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEE-eec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 303 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 303 ~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
++|||||+++..... .+ .|.++|..+++... +.. ....+. .+.|.| |++ ++++...|+..+|
T Consensus 275 ~~~Spdg~~lasgs~-D~--~V~iwd~~~~~~~~~~~~gH~~~V~---------~v~fSp---dg~-~laS~S~D~tvrv 338 (365)
T 4h5i_A 275 MDVDMKGELAVLASN-DN--SIALVKLKDLSMSKIFKQAHSFAIT---------EVTISP---DST-YVASVSAANTIHI 338 (365)
T ss_dssp EEECTTSCEEEEEET-TS--CEEEEETTTTEEEEEETTSSSSCEE---------EEEECT---TSC-EEEEEETTSEEEE
T ss_pred EEECCCCCceEEEcC-CC--EEEEEECCCCcEEEEecCcccCCEE---------EEEECC---CCC-EEEEEeCCCeEEE
Confidence 899999995444443 23 46667888887543 322 232333 344543 554 5667778999999
Q ss_pred EEEECC
Q 004816 381 GILDDF 386 (729)
Q Consensus 381 y~~d~~ 386 (729)
|.+..+
T Consensus 339 w~ip~~ 344 (365)
T 4h5i_A 339 IKLPLN 344 (365)
T ss_dssp EECCTT
T ss_pred EEcCCC
Confidence 876433
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-08 Score=107.13 Aligned_cols=247 Identities=10% Similarity=0.024 Sum_probs=139.8
Q ss_pred EEEECCEEEEEE----------CCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCC
Q 004816 150 FRIFGDTVIFSN----------YKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (729)
Q Consensus 150 ~~~~~~~i~~~~----------~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~ 218 (729)
|++++..++++. ..++.|.+|++.+ +... .+.... ....+..++|+|||+.|+....+
T Consensus 20 ~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~--~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d------- 88 (416)
T 2pm9_A 20 WSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLA--ADSEKPIASLQ--VDSKFNDLDWSHNNKIIAGALDN------- 88 (416)
T ss_dssp BCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSS--GGGCSCSCCCC--CSSCEEEEEECSSSSCEEEEESS-------
T ss_pred eCCCCCCEEEEEecCcccccccCCCCeEEEEEccC--CCCCcEEEEEe--cCCceEEEEECCCCCeEEEEccC-------
Confidence 444444456665 5677899999986 4321 221110 13457888999999988776553
Q ss_pred cceEEEEEEcCC----C-ceEEeeeCCCeeeeeeeCCC-CCeEEEEEecCCCCCCCCcEEEEEEecCCCC------ee-e
Q 004816 219 STTEIVAIALNG----Q-NIQVLVSGSDFYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENGD------VY-K 285 (729)
Q Consensus 219 ~~~~l~~~dl~~----g-~~~~lt~~~~~~~~~~~SPD-G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~------~~-~ 285 (729)
..|.++++.+ . ....+..........+|+|| ++.|+..+ . ...|+++|+. +++ .. .
T Consensus 89 --g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~-------dg~v~iwd~~-~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 89 --GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG-N-------NGEIFIWDMN-KCTESPSNYTPLT 157 (416)
T ss_dssp --SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEEC-S-------SSCEEBCBTT-TTSSCTTTCCCBC
T ss_pred --CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEc-C-------CCeEEEEECC-CCccccccccccc
Confidence 3588888876 2 23444445556778899999 67665444 2 2348899988 443 10 1
Q ss_pred eEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCC
Q 004816 286 RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGE 364 (729)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~ 364 (729)
........ ..+..+.|+||+. +++.... .+ .|.++|+.+++.............. ......+.|.+ +
T Consensus 158 ~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~---~ 225 (416)
T 2pm9_A 158 PGQSMSSV----DEVISLAWNQSLAHVFASAGS-SN--FASIWDLKAKKEVIHLSYTSPNSGI--KQQLSVVEWHP---K 225 (416)
T ss_dssp CCCSCCSS----CCCCEEEECSSCTTEEEEESS-SS--CEEEEETTTTEEEEEECCCCCSSCC--CCCEEEEEECS---S
T ss_pred cccccCCC----CCeeEEEeCCCCCcEEEEEcC-CC--CEEEEECCCCCcceEEecccccccc--CCceEEEEECC---C
Confidence 11112222 4567789999954 6666554 34 4667788887655444221100000 00112334443 5
Q ss_pred CCEEEEEEEECC-eEEEEEEECCCC-c-eEeec-cCCcceEEe-eee-CCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 365 KNLIACSYRQNG-RSYLGILDDFGH-S-LSLLD-IPFTDIDNI-TLG-NDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 365 ~~~l~~~s~~~g-~~~ly~~d~~~g-~-~~~lt-~~~~~v~~~-~~~-~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+..++++...++ ...|.++|+.++ . .+.+. .....+..+ ..+ ++.+++..+.. ..+.++|+.+++.
T Consensus 226 ~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d---g~v~~wd~~~~~~ 297 (416)
T 2pm9_A 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD---NTVLLWNPESAEQ 297 (416)
T ss_dssp CTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS---SEEEEECSSSCCE
T ss_pred CCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC---CCEEEeeCCCCcc
Confidence 545566665555 224555577664 2 33444 345567777 333 56666666543 4688888887753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-07 Score=111.73 Aligned_cols=232 Identities=9% Similarity=0.004 Sum_probs=142.6
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
+..++. ...++.|.+|++.++ .....+... ...+..++|||||++|+....+ ..|.++++.+++.
T Consensus 25 ~~~la~-~~~~g~v~iwd~~~~-~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~~~ 89 (814)
T 3mkq_A 25 EPWVLT-TLYSGRVEIWNYETQ-VEVRSIQVT----ETPVRAGKFIARKNWIIVGSDD---------FRIRVFNYNTGEK 89 (814)
T ss_dssp SSEEEE-EETTSEEEEEETTTT-EEEEEEECC----SSCEEEEEEEGGGTEEEEEETT---------SEEEEEETTTCCE
T ss_pred CCEEEE-EeCCCEEEEEECCCC-ceEEEEecC----CCcEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcE
Confidence 434444 446788999998872 234445543 3457888999999998877553 4699999998876
Q ss_pred E-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC-CCcE
Q 004816 234 Q-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGEL 311 (729)
Q Consensus 234 ~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp-DG~l 311 (729)
. .+....+.....+|||||++|+..+ ....|.++|+. ++.. ....+.+.. ..+..+.|+| ||++
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~dg~i~vw~~~-~~~~-~~~~~~~~~----~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGS--------DDLTVKLWNWE-NNWA-LEQTFEGHE----HFVMCVAFNPKDPST 155 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEE--------TTSEEEEEEGG-GTSE-EEEEEECCS----SCEEEEEEETTEEEE
T ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEc--------CCCEEEEEECC-CCce-EEEEEcCCC----CcEEEEEEEcCCCCE
Confidence 4 4444556677899999999988665 23458999988 5532 234445554 5667889999 7775
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEee-c-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIY-S-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~-~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
++.... .+ .|.++|+.+++..... . ....+....|.+. .++.++++...+|...+ ++..+++
T Consensus 156 l~~~~~-dg--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~l~~~~~dg~i~~--~d~~~~~ 219 (814)
T 3mkq_A 156 FASGCL-DR--TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-----------PDKPYMITASDDLTIKI--WDYQTKS 219 (814)
T ss_dssp EEEEET-TS--EEEEEETTCSSCSEEEECCCTTCCCEEEECCS-----------TTCCEEEEECTTSEEEE--EETTTTE
T ss_pred EEEEeC-CC--eEEEEECCCCcceeEEecCCCCCEEEEEEEEC-----------CCCCEEEEEeCCCEEEE--EECCCCc
Confidence 545444 34 4666777665433322 1 1123333344331 24445566666675444 4666665
Q ss_pred e-EeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 390 L-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 390 ~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
. ..+......+..+ ..+++.+++.++.. ..++.+++.+++.
T Consensus 220 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~v~vwd~~~~~~ 262 (814)
T 3mkq_A 220 CVATLEGHMSNVSFAVFHPTLPIIISGSED---GTLKIWNSSTYKV 262 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETT---SCEEEEETTTCSE
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcE
Confidence 3 3444455567666 44445555555533 3577778776653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-07 Score=92.00 Aligned_cols=235 Identities=10% Similarity=-0.002 Sum_probs=139.7
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCC--CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
.|+|.. .+.|+++++++ +..+.+.... ..+..+...++|+|+++.|+++... ...|++++++++..
T Consensus 3 ~l~~~~--~~~I~~~~~~g--~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~--------~~~I~~~~~~g~~~ 70 (267)
T 1npe_A 3 HLLFAQ--TGKIERLPLER--NTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS--------EPSIGRASLHGGEP 70 (267)
T ss_dssp EEEEEE--EEEEEEEEESS--SCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT--------TTEEEEEESSSCCC
T ss_pred EEEEEc--CCeEEEEEecC--cccccccceeeecCCCCcEEEEEEecCCCEEEEEECC--------CCEEEEEecCCCCc
Confidence 456664 34799999986 5433221100 0001344678899999987666432 25799999998776
Q ss_pred EEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-E
Q 004816 234 QVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 311 (729)
Q Consensus 234 ~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l 311 (729)
+.+.. +.....+.+++|+++.|+++... ...|++++++ +... ..+..... .....++++|++. |
T Consensus 71 ~~~~~~~~~~p~~ia~d~~~~~lyv~d~~-------~~~I~~~~~~-g~~~--~~~~~~~~----~~P~~i~vd~~~g~l 136 (267)
T 1npe_A 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQ-------LDRIEVAKMD-GTQR--RVLFDTGL----VNPRGIVTDPVRGNL 136 (267)
T ss_dssp EEEECTTCCCEEEEEEETTTTEEEEEETT-------TTEEEEEETT-SCSC--EEEECSSC----SSEEEEEEETTTTEE
T ss_pred EEEEECCCCCccEEEEEecCCeEEEEECC-------CCEEEEEEcC-CCCE--EEEEECCC----CCccEEEEeeCCCEE
Confidence 65543 32345677899999999887632 3469999987 3322 22332221 2345678999766 6
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
|+.... .....|+++++++...+.+.... ... ...+.+.+ +++.||++.. +...|++++++++..+
T Consensus 137 yv~~~~-~~~~~I~~~~~dg~~~~~~~~~~--~~~------P~gia~d~---~~~~lyv~d~--~~~~I~~~~~~g~~~~ 202 (267)
T 1npe_A 137 YWTDWN-RDNPKIETSHMDGTNRRILAQDN--LGL------PNGLTFDA---FSSQLCWVDA--GTHRAECLNPAQPGRR 202 (267)
T ss_dssp EEEECC-SSSCEEEEEETTSCCCEEEECTT--CSC------EEEEEEET---TTTEEEEEET--TTTEEEEEETTEEEEE
T ss_pred EEEECC-CCCcEEEEEecCCCCcEEEEECC--CCC------CcEEEEcC---CCCEEEEEEC--CCCEEEEEecCCCceE
Confidence 655432 23567999998765544443211 111 12344442 5678887764 3447888999876655
Q ss_pred eeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 392 LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 392 ~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.+......-..+..+++.+++.... ...+++++.++++.
T Consensus 203 ~~~~~~~~P~gi~~d~~~lyva~~~---~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 203 KVLEGLQYPFAVTSYGKNLYYTDWK---TNSVIAMDLAISKE 241 (267)
T ss_dssp EEEECCCSEEEEEEETTEEEEEETT---TTEEEEEETTTTEE
T ss_pred EEecCCCCceEEEEeCCEEEEEECC---CCeEEEEeCCCCCc
Confidence 4433333334455566666654332 24788999887763
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.2e-07 Score=96.45 Aligned_cols=238 Identities=6% Similarity=-0.042 Sum_probs=143.6
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
...+.++++.++.. ..++.|++|++.+ ++...+.... ....+...+|+|||+.|+....+ ..|.++
T Consensus 96 ~~~~~~s~~~l~~~-~~d~~v~lw~~~~--~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d---------g~i~iw 161 (401)
T 4aez_A 96 LNLLDWSNLNVVAV-ALERNVYVWNADS--GSVSALAETD--ESTYVASVKWSHDGSFLSVGLGN---------GLVDIY 161 (401)
T ss_dssp CBCEEECTTSEEEE-EETTEEEEEETTT--CCEEEEEECC--TTCCEEEEEECTTSSEEEEEETT---------SCEEEE
T ss_pred EEEEeecCCCEEEE-ECCCeEEEeeCCC--CcEeEeeecC--CCCCEEEEEECCCCCEEEEECCC---------CeEEEE
Confidence 34567777665544 3577899999987 6554443321 13456788999999988776543 358899
Q ss_pred EcCCCceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 227 ALNGQNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 227 dl~~g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
++.+++... +...........| +++.|+..+ ....|.++|+. .+.. ....+.+.. ..+..+.|
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~--------~dg~i~i~d~~-~~~~-~~~~~~~~~----~~v~~~~~ 225 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSW--NRHVLSSGS--------RSGAIHHHDVR-IANH-QIGTLQGHS----SEVCGLAW 225 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEE--------TTSEEEEEETT-SSSC-EEEEEECCS----SCEEEEEE
T ss_pred ECcCCeEEEEecCCCCceEEEEE--CCCEEEEEc--------CCCCEEEEecc-cCcc-eeeEEcCCC----CCeeEEEE
Confidence 998876544 3334445566777 567776555 23459999987 3321 234445554 56678899
Q ss_pred CCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEE--ECCeEEEEE
Q 004816 306 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR--QNGRSYLGI 382 (729)
Q Consensus 306 spDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~--~~g~~~ly~ 382 (729)
+|||+++++... .+ .|.++|+.+++..... .....+....|.+ ++..++++.. .++ .|.+
T Consensus 226 ~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p------------~~~~ll~~~~gs~d~--~i~i 288 (401)
T 4aez_A 226 RSDGLQLASGGN-DN--VVQIWDARSSIPKFTKTNHNAAVKAVAWCP------------WQSNLLATGGGTMDK--QIHF 288 (401)
T ss_dssp CTTSSEEEEEET-TS--CEEEEETTCSSEEEEECCCSSCCCEEEECT------------TSTTEEEEECCTTTC--EEEE
T ss_pred cCCCCEEEEEeC-CC--eEEEccCCCCCccEEecCCcceEEEEEECC------------CCCCEEEEecCCCCC--EEEE
Confidence 999995444443 34 4667788776654433 3333344444543 5556666654 345 4566
Q ss_pred EECCCCceEeeccCCcceEEe-e-eeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 383 LDDFGHSLSLLDIPFTDIDNI-T-LGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 383 ~d~~~g~~~~lt~~~~~v~~~-~-~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+|+.+++..........+..+ . +++..++...+..+ ..++++++.+++.
T Consensus 289 ~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d--g~i~v~~~~~~~~ 339 (401)
T 4aez_A 289 WNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD--NNLSIWSYSSSGL 339 (401)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTT--CEEEEEEEETTEE
T ss_pred EECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCC--CcEEEEecCCccc
Confidence 687777654433444556666 3 44444443333233 4677777776654
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-09 Score=120.99 Aligned_cols=128 Identities=18% Similarity=0.157 Sum_probs=86.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hhhhHHHhh-CCcEEEEecCCC-CCCCchhHHHhhc
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYGG-STGYGREFRERLL 544 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la~-~G~~v~~~d~rG-s~g~g~~~~~~~~ 544 (729)
|...+. +|.|... +.++.|+||++|||++....... ......|++ .|++|+.+|||. .-|++.... ..
T Consensus 95 dcl~l~--v~~P~~~-----~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~~--~~ 165 (543)
T 2ha2_A 95 DCLYLN--VWTPYPR-----PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPG--SR 165 (543)
T ss_dssp CCCEEE--EEEESSC-----CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTT--CS
T ss_pred cCCeEE--EeecCCC-----CCCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEecccccccccccCCC--CC
Confidence 555554 4567541 14567999999998754333221 223456665 799999999994 222221100 00
Q ss_pred cCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEEeccc
Q 004816 545 GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGV 604 (729)
Q Consensus 545 ~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---~~~~~a~v~~~~~ 604 (729)
...+...+.|+.++++|+.++ ...|++||.|+|+|+||++++.++.. ..+|+++|+.+|.
T Consensus 166 ~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 231 (543)
T 2ha2_A 166 EAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGT 231 (543)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCC
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCC
Confidence 111223489999999999875 24699999999999999999887763 5689999999985
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-07 Score=96.86 Aligned_cols=257 Identities=10% Similarity=0.029 Sum_probs=135.2
Q ss_pred EECCEEEEEECC----CCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCC-CCCCcceEEEE
Q 004816 152 IFGDTVIFSNYK----DQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVA 225 (729)
Q Consensus 152 ~~~~~i~~~~~~----~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~-~~~~~~~~l~~ 225 (729)
+++.+++..+.. .+.|+++|..+ ++. ..+..+. ... +.+||||++++....-... ........|.+
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t--~~v~~~I~vG~-----~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGF-----LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECS-----SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCC--CeEEEEEECCC-----CCc-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 344466666553 56899999987 443 3333321 113 8899999986555321000 00000246999
Q ss_pred EEcCCCceE-EeeeCC-------CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCC-----
Q 004816 226 IALNGQNIQ-VLVSGS-------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF----- 292 (729)
Q Consensus 226 ~dl~~g~~~-~lt~~~-------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~----- 292 (729)
+|.+++++. .+.-+. ..-....+||||++|+...... ...|.++|++ +++......+.+.
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~------~~~VsVID~~-t~~vv~tI~v~g~~~~~P 186 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP------APAVGVVDLE-GKAFKRMLDVPDCYHIFP 186 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS------SCEEEEEETT-TTEEEEEEECCSEEEEEE
T ss_pred EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC------CCeEEEEECC-CCcEEEEEECCCcceeec
Confidence 999998764 342221 1234578999999987665321 2346666665 4443211111000
Q ss_pred ----------------------------------CCCccccccCceeC-CCCcEEEEEecCCCceEEEEEEcCCCeEEEe
Q 004816 293 ----------------------------------DPTIVESPTEPKWS-SKGELFFVTDRKNGFWNLHKWIESNNEVLAI 337 (729)
Q Consensus 293 ----------------------------------~~~~~~~~~~~~ws-pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l 337 (729)
+.+-......+.|. +||+++|.+.. .+++.+|..++..+.+
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~----g~V~v~d~~~~~~~v~ 262 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT----GKIHQIDLSSGDAKFL 262 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTT----SEEEEEECTTSSCEEC
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCC----CEEEEEECCCCcceee
Confidence 00000001123442 56665555543 2467777665544332
Q ss_pred eccC---ccccCCcccccC-cceeeeeecCCCCEEEEEEEEC-------CeEEEEEEECCCCceE-eeccCCcceEEe--
Q 004816 338 YSLD---AEFSRPLWVFGI-NSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSLS-LLDIPFTDIDNI-- 403 (729)
Q Consensus 338 ~~~~---~~~~~~~w~~~~-~~~~~l~~~~~~~~l~~~s~~~-------g~~~ly~~d~~~g~~~-~lt~~~~~v~~~-- 403 (729)
.+.. .....+.|.++. ..+.+.+ +++++|+....+ ...+|+++|++++++. .+..+. ....+
T Consensus 263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~---~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lav 338 (386)
T 3sjl_D 263 PAVEALTEAERADGWRPGGWQQVAYHR---ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINV 338 (386)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEET---TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEE
T ss_pred cceeccccccccccccCCCcceeeECC---CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEE
Confidence 2110 000113455532 3345543 778888877543 3578999999998853 444332 23334
Q ss_pred eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 404 TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+.+++..+|.+.. ....+..+|..+++.
T Consensus 339 s~D~~~~ly~tn~--~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 339 SQDEKPLLYALST--GDKTLYIHDAESGEE 366 (386)
T ss_dssp CSSSSCEEEEEET--TTTEEEEEETTTCCE
T ss_pred CCCCCeEEEEEcC--CCCeEEEEECCCCcE
Confidence 4555545555542 235789999988874
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-07 Score=94.92 Aligned_cols=187 Identities=12% Similarity=0.069 Sum_probs=112.8
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCe---ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
.++.+...++.|.+|++.+ +... .+..+ ....+...+|||||++|+....+. .+.++++.++.
T Consensus 29 ~~las~~~D~~i~iw~~~~--~~~~~~~~~~~~---h~~~v~~~~~sp~g~~l~s~s~D~---------~v~iw~~~~~~ 94 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEG--DSWICKSVLSEG---HQRTVRKVAWSPCGNYLASASFDA---------TTCIWKKNQDD 94 (345)
T ss_dssp SCEEEEETTSCEEEEEEET--TEEEEEEEECSS---CSSCEEEEEECTTSSEEEEEETTS---------CEEEEEECCC-
T ss_pred CEEEEEcCCCeEEEEEcCC--Ccceeeeeeccc---cCCcEEEEEECCCCCEEEEEECCC---------cEEEEEccCCC
Confidence 3445555678899999876 4321 12222 134578889999999887666543 46677777665
Q ss_pred eE---EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC-eeeeEEecCCCCCccccccCceeCCC
Q 004816 233 IQ---VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 233 ~~---~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
.+ .+..........+|+|||++|+..+.+ ..|.++|+. ++. ......+.+.. ..+..+.|+||
T Consensus 95 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D--------~~v~iwd~~-~~~~~~~~~~~~~h~----~~v~~~~~~p~ 161 (345)
T 3fm0_A 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRD--------KSVWVWEVD-EEDEYECVSVLNSHT----QDVKHVVWHPS 161 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEETT--------SCEEEEEEC-TTSCEEEEEEECCCC----SCEEEEEECSS
T ss_pred eEEEEEccCCCCCceEEEEeCCCCEEEEEECC--------CeEEEEECC-CCCCeEEEEEecCcC----CCeEEEEECCC
Confidence 33 233344567788999999998876632 348888987 443 22234455554 55677899999
Q ss_pred CcEEEEEecCCCceEEEEEEcCCCeEEEee---ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 309 GELFFVTDRKNGFWNLHKWIESNNEVLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 309 G~l~~~~~~~~g~~~l~~~d~~~g~~~~l~---~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
|++++.... .+.-.|| |..+++...+. .....+. .+.|.+ +++ ++++...++..+||....
T Consensus 162 ~~~l~s~s~-d~~i~~w--~~~~~~~~~~~~~~~h~~~v~---------~l~~sp---~g~-~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 162 QELLASASY-DDTVKLY--REEEDDWVCCATLEGHESTVW---------SLAFDP---SGQ-RLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp SSCEEEEET-TSCEEEE--EEETTEEEEEEEECCCSSCEE---------EEEECT---TSS-EEEEEETTSCEEEEEEEC
T ss_pred CCEEEEEeC-CCcEEEE--EecCCCEEEEEEecCCCCceE---------EEEECC---CCC-EEEEEeCCCeEEEecccc
Confidence 994444444 3544454 55555433222 2222222 334442 444 556667788888987654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-07 Score=102.06 Aligned_cols=253 Identities=9% Similarity=-0.021 Sum_probs=139.4
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l 167 (729)
.+.++.|+| ++.++.+.. .++...+|.....+ ++....+.. ..+.....++.++++ ..+++...++.+
T Consensus 104 ~v~~~~~s~d~~~l~~~~~---~dg~v~iwd~~~~~-~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACAD---SDKSLLVFDVDKTS-KNVLKLRKR------FCFSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CEEEEEECTTSSEEEEEEG---GGTEEEEEEECSSS-SSCEEEEEE------EECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceEEEEEcCCCCEEEEEEC---CCCeEEEEECcCCC-Cceeeeeec------ccCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 467899999 777666654 35777888876321 233222210 001112234445433 344455567899
Q ss_pred EEEeCCCCCCCCe-----ecCCCCCCCceeeecceecCC---CCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe-e-
Q 004816 168 YKHSIDSKDSSPL-----PITPDYGEPLVSYADGIFDPR---FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL-V- 237 (729)
Q Consensus 168 ~~~d~~~~~~~~~-----~lt~~~~~~~~~~~~~~~SPd---G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l-t- 237 (729)
+++++.+ +... .+... ...+..++|+|| |+.|+....+ ..|+++|+.+++.... .
T Consensus 174 ~~~~~~~--~~~~~~~~~~~~~h----~~~v~~~~~sp~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 174 YSIDINS--IPEEKFTQEPILGH----VSMLTDVHLIKDSDGHQFIITSDRD---------EHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp EEEETTS--CCCSSCCCCCSEEC----SSCEEEEEEEECTTSCEEEEEEETT---------SCEEEEEESCTTCEEEECC
T ss_pred EEEecCC--cccccccceeeecc----cCceEEEEEcCCCCCCcEEEEEcCC---------CcEEEEECCCCceeeeeec
Confidence 9999976 4332 22222 244677899999 8776655443 3588899988765432 3
Q ss_pred eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecC-------------------CCCCccc
Q 004816 238 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-------------------FDPTIVE 298 (729)
Q Consensus 238 ~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~-------------------~~~~~~~ 298 (729)
........++|| ||++|+..+ ....|.++|+. +++......... .......
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~--------~d~~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAG--------GDDKIFAWDWK-TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEE--------SSSEEEEEETT-TCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred CCCCceEEEEEC-CCCEEEEEe--------CCCeEEEEECC-CCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 344567788999 999988766 23469999998 676422111110 0000003
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEE-EcCCCeEEEee--ccCccccCCcccccCcceeeeeecCCCCEEEEEEEE-
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKW-IESNNEVLAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ- 374 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~-d~~~g~~~~l~--~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~- 374 (729)
.+..+.|+|||++++......+.-.||.+ +..+++.+.+. .....+ ..+.|. .+ .++++...
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v---------~~~~~~----~~-~~~v~~~~~ 374 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNV---------ISLSAH----ND-EFQVTLDNK 374 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCE---------EEEEEE----TT-EEEEEECCT
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCce---------EEEEec----CC-cEEEEEecc
Confidence 45678999999944444421454445544 22333333322 211111 234444 33 34444332
Q ss_pred ------CCeEEEEEEECCCCceE
Q 004816 375 ------NGRSYLGILDDFGHSLS 391 (729)
Q Consensus 375 ------~g~~~ly~~d~~~g~~~ 391 (729)
+....||.++.++++++
T Consensus 375 ~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 375 ESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp TCCSSCCCSEEEEEEETTTTEEE
T ss_pred cCCCCCCcceEEEEEEcCCCeEE
Confidence 12248888888777664
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.85 E-value=5.5e-07 Score=102.12 Aligned_cols=234 Identities=8% Similarity=0.005 Sum_probs=141.1
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
+|+++++.|++.. ++.++++++.++ .....+... ...+...+|||||++|+-...+ ..|.++|+
T Consensus 25 ~~spdg~~l~~~~--~~~v~l~~~~~~-~~~~~~~~h----~~~v~~~~~spdg~~lasg~~d---------~~v~lWd~ 88 (611)
T 1nr0_A 25 GNTPAGDKIQYCN--GTSVYTVPVGSL-TDTEIYTEH----SHQTTVAKTSPSGYYCASGDVH---------GNVRIWDT 88 (611)
T ss_dssp EECTTSSEEEEEE--TTEEEEEETTCS-SCCEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEES
T ss_pred eeCCCCCEEEeCC--CCEEEEecCCCc-ccCeEecCC----CCceEEEEECCCCcEEEEEeCC---------CCEEEeEC
Confidence 3555666777765 357999999752 445556554 3457888999999987766543 46888898
Q ss_pred CCCce---EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 229 NGQNI---QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 229 ~~g~~---~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
.+++. ..+....+.....+|||||++|+..+.+... ...|+++|. ++. ...+.+.. ..+..+.|
T Consensus 89 ~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~----~~~v~~wd~---~~~--~~~l~gh~----~~v~~v~f 155 (611)
T 1nr0_A 89 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER----FGHVFLFDT---GTS--NGNLTGQA----RAMNSVDF 155 (611)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC----SEEEEETTT---CCB--CBCCCCCS----SCEEEEEE
T ss_pred CCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCc----eeEEEEeeC---CCC--cceecCCC----CCceEEEE
Confidence 75442 2233344567788999999999877633211 235666653 332 22344554 56678899
Q ss_pred CCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 306 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 306 spDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
+||+. +++.... .+. +.++|..+++..... .....+. .+.|.| +++ ++++...++...||
T Consensus 156 ~p~~~~~l~s~s~-D~~--v~lwd~~~~~~~~~l~~H~~~V~---------~v~fsp---dg~-~las~s~D~~i~lw-- 217 (611)
T 1nr0_A 156 KPSRPFRIISGSD-DNT--VAIFEGPPFKFKSTFGEHTKFVH---------SVRYNP---DGS-LFASTGGDGTIVLY-- 217 (611)
T ss_dssp CSSSSCEEEEEET-TSC--EEEEETTTBEEEEEECCCSSCEE---------EEEECT---TSS-EEEEEETTSCEEEE--
T ss_pred CCCCCeEEEEEeC-CCe--EEEEECCCCeEeeeeccccCceE---------EEEECC---CCC-EEEEEECCCcEEEE--
Confidence 99997 5555544 444 444566666544333 2222222 334442 544 55666678876666
Q ss_pred ECCCCceE-eec-------cCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 384 DDFGHSLS-LLD-------IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 384 d~~~g~~~-~lt-------~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+..+++.. .+. .....|..+ ..+++..++.++.. ..+.++|+.+++
T Consensus 218 d~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D---~~v~lWd~~~~~ 272 (611)
T 1nr0_A 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD---KTIKIWNVATLK 272 (611)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTTE
T ss_pred ECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC---CeEEEEeCCCCc
Confidence 55555543 332 234457776 44555566665543 367777877765
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.5e-07 Score=91.64 Aligned_cols=200 Identities=9% Similarity=0.093 Sum_probs=113.9
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCe---ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
..++.++++ ++.+...++.|.+|++.+ +..+ .+... .....+...+|+|||+.|+....+ ..|
T Consensus 17 v~~~~~s~~-~las~~~D~~i~lw~~~~--~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~s~D---------~~v 82 (330)
T 2hes_X 17 IWSFDFSQG-ILATGSTDRKIKLVSVKY--DDFTLIDVLDET--AHKKAIRSVAWRPHTSLLAAGSFD---------STV 82 (330)
T ss_dssp EEEEEEETT-EEEEEESSSCEEEEECSS--SCCEEEEEECTT--CCCSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred eeeeccCCC-EEEEEcCCCEEEEEEecC--CCeEEEEEEecC--CccCCEEEEEECCCCCEEEEEeCC---------CcE
Confidence 345666777 566666788899999976 4322 22111 013456788999999987766543 346
Q ss_pred EEEEcCCC-------ce-EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC-eeeeEEecCCCC
Q 004816 224 VAIALNGQ-------NI-QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDP 294 (729)
Q Consensus 224 ~~~dl~~g-------~~-~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~-~~~~~~~~~~~~ 294 (729)
.++++..+ +. ..+..........+|||||++|+-.+.+ ..|.++|+...+. ......+.+..
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D--------~~v~iwd~~~~~~~~~~~~~~~~h~- 153 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD--------KSVWIWETDESGEEYECISVLQEHS- 153 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT--------SCEEEEECCTTCCCCEEEEEECCCS-
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC--------CEEEEEeccCCCCCeEEEEEeccCC-
Confidence 77777432 11 2233334556778999999998876632 3488889842332 22234455555
Q ss_pred CccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCC-CCEEEEEEE
Q 004816 295 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGE-KNLIACSYR 373 (729)
Q Consensus 295 ~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~-~~~l~~~s~ 373 (729)
..+..+.|+|||++++.... .+.-+|| |..++..+.+..... .....| .+.|.+ + +...+++..
T Consensus 154 ---~~v~~v~~~p~~~~l~s~s~-D~~i~iW--~~~~~~~~~~~~~~~-h~~~v~-----~~~~~~---~~~~~~l~s~s 218 (330)
T 2hes_X 154 ---QDVKHVIWHPSEALLASSSY-DDTVRIW--KDYDDDWECVAVLNG-HEGTVW-----SSDFDK---TEGVFRLCSGS 218 (330)
T ss_dssp ---SCEEEEEECSSSSEEEEEET-TSCEEEE--EEETTEEEEEEEECC-CSSCEE-----EEEECC---SSSSCEEEEEE
T ss_pred ---CceEEEEECCCCCEEEEEcC-CCeEEEE--ECCCCCeeEEEEccC-CCCcEE-----EEEecC---CCCeeEEEEEe
Confidence 56678899999995555554 4555555 444443222221110 112222 223332 3 234566777
Q ss_pred ECCeEEEEEEE
Q 004816 374 QNGRSYLGILD 384 (729)
Q Consensus 374 ~~g~~~ly~~d 384 (729)
.++..+||.+.
T Consensus 219 ~D~~v~iw~~~ 229 (330)
T 2hes_X 219 DDSTVRVWKYM 229 (330)
T ss_dssp TTSCEEEEEEE
T ss_pred CCCeEEEEEec
Confidence 78888888765
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.84 E-value=7.6e-09 Score=107.13 Aligned_cols=207 Identities=9% Similarity=0.028 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcE
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 573 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 573 (729)
.|+++||.........|..++..|. .+|.|+.+|++|.+.............+ ....+|+.+.++.+. +..++
T Consensus 91 ~l~~~hg~g~~~~~~~~~~l~~~L~-~~~~v~~~d~~G~g~~~~~~~~~~~~~~-~~~a~~~~~~i~~~~-----~~~p~ 163 (319)
T 2hfk_A 91 VLVGCTGTAANGGPHEFLRLSTSFQ-EERDFLAVPLPGYGTGTGTGTALLPADL-DTALDAQARAILRAA-----GDAPV 163 (319)
T ss_dssp EEEEECCCCTTCSTTTTHHHHHTTT-TTCCEEEECCTTCCBC---CBCCEESSH-HHHHHHHHHHHHHHH-----TTSCE
T ss_pred cEEEeCCCCCCCcHHHHHHHHHhcC-CCCceEEecCCCCCCCcccccCCCCCCH-HHHHHHHHHHHHHhc-----CCCCE
Confidence 7899998212333455666666665 6899999999976542000000000000 011333333333332 23679
Q ss_pred EEEEcChHHHHHHHHHh-C----CCcceEEEEeccccChhH--HhhhcchhhhhhhhhhcC--Ch------hhhhhcCcc
Q 004816 574 CITGGSAGGYTTLAALA-F----RDTFKAGASLYGVADLSM--LRAETHKFESRYIDNLVG--SE------KDYYEKSPI 638 (729)
Q Consensus 574 ~i~G~S~GG~~a~~~~~-~----~~~~~a~v~~~~~~d~~~--~~~~~~~~~~~~~~~~~~--~~------~~~~~~sp~ 638 (729)
.++|||+||.+|+.++. . ++.++++++..+...... ............+..... .. ..|...-..
T Consensus 164 ~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (319)
T 2hfk_A 164 VLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARFLAG 243 (319)
T ss_dssp EEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTSCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHS
T ss_pred EEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCCCchhHHHHHHHHhhHHHHHhhccccchHHHHHHHHHHHHHHh
Confidence 99999999999998886 3 567999998876532110 000000000000000000 00 111110001
Q ss_pred cccCCCCCCEEEEEeCCCCCCChHH-HHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 639 NFVDKFSCPIILFQGLEDKVVPPDQ-ARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 639 ~~~~~i~~PvL~i~G~~D~~vp~~~-~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.....+++|+|+++| +|..+++.. ...+.+. ...+++++.++ ++|.....+......+.+.+|+.+...
T Consensus 244 ~~~~~i~~Pvl~i~g-~D~~~~~~~~~~~~~~~---~~~~~~~~~v~-g~H~~~~~e~~~~~~~~i~~~L~~~~~ 313 (319)
T 2hfk_A 244 PRPGRSSAPVLLVRA-SEPLGDWQEERGDWRAH---WDLPHTVADVP-GDHFTMMRDHAPAVAEAVLSWLDAIEG 313 (319)
T ss_dssp CCCCCCCSCEEEEEE-SSCSSCCCGGGCCCSCC---CSSCSEEEEES-SCTTHHHHTCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCCCEEEEEc-CCCCCCccccccchhhc---CCCCCEEEEeC-CCcHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 124678899999999 999888754 2222111 12256888998 488743323677888889999988654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-07 Score=98.04 Aligned_cols=238 Identities=11% Similarity=0.031 Sum_probs=138.1
Q ss_pred CceEEEE--CCEEEEEECCCCcEEEEeC----CCCCCC-------CeecCCCCCC------CceeeecceecCCCCEEEE
Q 004816 147 GGAFRIF--GDTVIFSNYKDQRLYKHSI----DSKDSS-------PLPITPDYGE------PLVSYADGIFDPRFNRYVT 207 (729)
Q Consensus 147 ~~~~~~~--~~~i~~~~~~~~~l~~~d~----~~~~~~-------~~~lt~~~~~------~~~~~~~~~~SPdG~~l~~ 207 (729)
+.+..++ +..++++...++.|.+|++ .+ ++ ...+...... ....+...+|+|||+.|+.
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQE--GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCC--ccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 3344444 3325555566788999999 76 44 2233321000 1235678899999998877
Q ss_pred EEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeE
Q 004816 208 VREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 287 (729)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~ 287 (729)
...+ ..|.+++..+.....+...........|+|||++|+..+. ...|.++|+. +++. ..
T Consensus 126 ~~~d---------g~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------d~~i~iwd~~-~~~~--~~ 185 (425)
T 1r5m_A 126 GVEN---------GELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV--------ENVTILWNVI-SGTV--MQ 185 (425)
T ss_dssp EETT---------SCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEET--------TCCEEEEETT-TTEE--EE
T ss_pred EeCC---------CeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEec--------CCeEEEEECC-CCcE--EE
Confidence 6543 3588888665555666555667788999999999887662 2348899987 5654 22
Q ss_pred EecCCCCCcccc---------------ccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccc
Q 004816 288 CVAGFDPTIVES---------------PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVF 351 (729)
Q Consensus 288 ~~~~~~~~~~~~---------------~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~ 351 (729)
.+.... .. +..+.|++++.++..... ..|+++|+.+++..... .....+..
T Consensus 186 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~i~~~d~~~~~~~~~~~~~~~~i~~----- 252 (425)
T 1r5m_A 186 HFELKE----TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK----GAIFVYQITEKTPTGKLIGHHGPISV----- 252 (425)
T ss_dssp EECCC-------------------CCCBSCCEEEETTEEEEECGG----GCEEEEETTCSSCSEEECCCSSCEEE-----
T ss_pred Eeeccc----cCccceeeccccCCcceeeEEEEcCCCEEEEEcCC----CeEEEEEcCCCceeeeeccCCCceEE-----
Confidence 333222 22 677899999865444333 35777888776544333 22222222
Q ss_pred cCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 352 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 352 ~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
+.|.+ +++ ++++...+|...+| ++.+++ ...+......+..+ ..+++ .++..+.. ..++++|+.
T Consensus 253 ----~~~~~---~~~-~l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d---~~i~i~d~~ 318 (425)
T 1r5m_A 253 ----LEFND---TNK-LLLSASDDGTLRIW--HGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMD---GSVRLWSLK 318 (425)
T ss_dssp ----EEEET---TTT-EEEEEETTSCEEEE--CSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETT---SEEEEEETT
T ss_pred ----EEECC---CCC-EEEEEcCCCEEEEE--ECCCCccceEecCCCccEEEEEECCCC-EEEEEeCC---CcEEEEECC
Confidence 33432 555 45555566765555 655554 34444455567776 44455 55544433 478888887
Q ss_pred CCcc
Q 004816 430 DHKL 433 (729)
Q Consensus 430 ~~~~ 433 (729)
+++.
T Consensus 319 ~~~~ 322 (425)
T 1r5m_A 319 QNTL 322 (425)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 7653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.2e-07 Score=94.14 Aligned_cols=208 Identities=10% Similarity=0.030 Sum_probs=119.0
Q ss_pred CccCceEEcC-C--CcEEEEeecCCCCCceEEEEcCCCCCC-CCcccCCCCCcccccccccCCceEEEECCEEEEEECCC
Q 004816 89 KRLGGTAVDG-H--GRLIWLESRPTEAGRGVLVKEPAKAGD-EPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g--~~~~~~~~~~~~~~~~~l~~~~~~~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (729)
..+..+.|+| + +.++++.. .++...+|..... . ....+......+....+ ....+|++++. .+++...+
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~-~~~~~~s~~~~-~l~~~~~d 138 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGD---FGGNLHIWNLEAP--EMPVYSVKGHKEIINAIDG-IGGLGIGEGAP-EIVTGSRD 138 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEE---TTSCEEEECTTSC--SSCSEEECCCSSCEEEEEE-ESGGGCC-CCC-EEEEEETT
T ss_pred CcEEEEEEcCCCCCCceEEEec---CCCeEEEEeCCCC--CccEEEEEecccceEEEee-ccccccCCCcc-EEEEEeCC
Confidence 3556788998 4 45555544 3567677765433 1 12222211101110000 00012333343 44555567
Q ss_pred CcEEEEeCCCCCCC--CeecCCCCCCCceeeecce----ecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee
Q 004816 165 QRLYKHSIDSKDSS--PLPITPDYGEPLVSYADGI----FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS 238 (729)
Q Consensus 165 ~~l~~~d~~~~~~~--~~~lt~~~~~~~~~~~~~~----~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~ 238 (729)
+.|.+||+.+ +. ...+....+.....+.... |+|+|+.++....+ ..|+++|+.+++......
T Consensus 139 ~~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~ 207 (357)
T 3i2n_A 139 GTVKVWDPRQ--KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN---------GDIKLFDLRNMALRWETN 207 (357)
T ss_dssp SCEEEECTTS--CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---------SEEEEEETTTTEEEEEEE
T ss_pred CeEEEEeCCC--CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---------CeEEEEECccCceeeecC
Confidence 8999999987 43 4444332211112333444 89999987766543 469999999988766666
Q ss_pred CCCeeeeeeeCC---CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeee-eE--EecCCCCCccccccCceeCCCCc-E
Q 004816 239 GSDFYAFPRMDP---RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RV--CVAGFDPTIVESPTEPKWSSKGE-L 311 (729)
Q Consensus 239 ~~~~~~~~~~SP---DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~-~~--~~~~~~~~~~~~~~~~~wspDG~-l 311 (729)
.........|+| ||+.|+... ....|.++|+. +++... .. ...+.. ..+..+.|+|||+ +
T Consensus 208 ~~~~v~~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~-~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 208 IKNGVCSLEFDRKDISMNKLVATS--------LEGKFHVFDMR-TQHPTKGFASVSEKAHK----STVWQVRHLPQNREL 274 (357)
T ss_dssp CSSCEEEEEESCSSSSCCEEEEEE--------STTEEEEEEEE-EEETTTEEEEEEEECCS----SCEEEEEEETTEEEE
T ss_pred CCCceEEEEcCCCCCCCCEEEEEC--------CCCeEEEEeCc-CCCcccceeeeccCCCc----CCEEEEEECCCCCcE
Confidence 666778899999 999888765 23458888887 443211 11 122444 5667889999998 7
Q ss_pred EEEEecCCCceEEEEEE
Q 004816 312 FFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d 328 (729)
++.... .+.-.||.++
T Consensus 275 l~~~~~-dg~i~iwd~~ 290 (357)
T 3i2n_A 275 FLTAGG-AGGLHLWKYE 290 (357)
T ss_dssp EEEEET-TSEEEEEEEE
T ss_pred EEEEeC-CCcEEEeecC
Confidence 776665 5655555443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.7e-07 Score=91.98 Aligned_cols=225 Identities=10% Similarity=0.047 Sum_probs=136.0
Q ss_pred EEEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-- 232 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-- 232 (729)
.++++...++.|.+||+.+ +. ...+... ...+...+|+|||+.|+....+ ..+.++++.+++
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~--~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~d---------~~v~iw~~~~~~~~ 132 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYT--TNKVHAIPLR----SSWVMTCAYAPSGNYVACGGLD---------NICSIYNLKTREGN 132 (340)
T ss_dssp SEEEEEETTTEEEEEETTT--CCEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------CEEEEEETTTCSBS
T ss_pred CEEEEEeCCCcEEEEECCC--CCcceEeecC----CccEEEEEECCCCCEEEEEeCC---------CeEEEEECccCCCc
Confidence 4566777788999999886 43 3333333 2346778899999987766543 467888887653
Q ss_pred ---eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 233 ---IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 233 ---~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
.+.+....+......|+||++ |+..+ . ...|.++|+. +++. ...+.+.. ..+..+.|+|||
T Consensus 133 ~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s-~-------d~~i~~wd~~-~~~~--~~~~~~h~----~~v~~~~~~~~~ 196 (340)
T 1got_B 133 VRVSRELAGHTGYLSCCRFLDDNQ-IVTSS-G-------DTTCALWDIE-TGQQ--TTTFTGHT----GDVMSLSLAPDT 196 (340)
T ss_dssp CEEEEEEECCSSCEEEEEEEETTE-EEEEE-T-------TSCEEEEETT-TTEE--EEEECCCS----SCEEEEEECTTS
T ss_pred ceeEEEecCCCccEEEEEECCCCc-EEEEE-C-------CCcEEEEECC-CCcE--EEEEcCCC----CceEEEEECCCC
Confidence 122333445566778999986 55444 2 2348899988 6654 44555554 566788999999
Q ss_pred cEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCC
Q 004816 310 ELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 388 (729)
Q Consensus 310 ~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g 388 (729)
++++.... .+ .|.++|+.+++..... .....+. .+.|.| +++ ++++...+|..+|| |+.++
T Consensus 197 ~~l~sg~~-d~--~v~~wd~~~~~~~~~~~~h~~~v~---------~v~~~p---~~~-~l~s~s~d~~v~iw--d~~~~ 258 (340)
T 1got_B 197 RLFVSGAC-DA--SAKLWDVREGMCRQTFTGHESDIN---------AICFFP---NGN-AFATGSDDATCRLF--DLRAD 258 (340)
T ss_dssp SEEEEEET-TS--CEEEEETTTCSEEEEECCCSSCEE---------EEEECT---TSS-EEEEEETTSCEEEE--ETTTT
T ss_pred CEEEEEeC-CC--cEEEEECCCCeeEEEEcCCcCCEE---------EEEEcC---CCC-EEEEEcCCCcEEEE--ECCCC
Confidence 96555544 34 4556687777654333 2222222 234432 444 55566677776666 66555
Q ss_pred ceE-eeccC--CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 389 SLS-LLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 389 ~~~-~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+.. .+... ...+..+ ..+++.+++.++.. ..+.++|...++
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---~~i~vwd~~~~~ 303 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD---FNCNVWDALKAD 303 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCC
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEEECCC---CeEEEEEcccCc
Confidence 432 23222 2246666 44555566655543 367777776654
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.3e-09 Score=113.56 Aligned_cols=111 Identities=10% Similarity=-0.088 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCCCCccccchh-hhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~-~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
...|+||++||.+... ...|.. .+..|.++ ||.|+++|+||.+.... ..... +. ....+|+.+++++|.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~~--~~~~~-~~-~~~~~dl~~li~~L~~~~g 142 (452)
T 1bu8_A 68 LDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEY--TQASY-NT-RVVGAEIAFLVQVLSTEMG 142 (452)
T ss_dssp TTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSCH--HHHHH-HH-HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCch--hHhHh-hH-HHHHHHHHHHHHHHHHhcC
Confidence 3458999999986544 233444 55666654 99999999997654331 11110 00 1225788888999876544
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
++.+++.|+|||+||.+|+.++. +|+++++++++.|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 56789999999999999999998 999999999998754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.82 E-value=8.3e-07 Score=92.03 Aligned_cols=243 Identities=13% Similarity=0.059 Sum_probs=133.2
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.+++....++.|+++++++ ++.+.+.... ......+.++|||+.++....... ....|++++.++++.+.
T Consensus 57 ~l~~~~~~~~~i~~~d~~~--~~~~~~~~~~---~~~~~~i~~~~dg~l~v~~~~~~~-----~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPET--KEIKRPFVSH---KANPAAIKIHKDGRLFVCYLGDFK-----STGGIFAATENGDNLQD 126 (333)
T ss_dssp CEEEEETTTCEEEEECTTT--CCEEEEEECS---SSSEEEEEECTTSCEEEEECTTSS-----SCCEEEEECTTSCSCEE
T ss_pred CEEEEECCCCEEEEEeCCC--CcEEEEeeCC---CCCcceEEECCCCcEEEEeCCCCC-----CCceEEEEeCCCCEEEE
Confidence 5666766677999999987 7666654211 234577889999985444322210 02479999999888764
Q ss_pred eee---CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-E
Q 004816 236 LVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 311 (729)
Q Consensus 236 lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l 311 (729)
+.. .........++|||+ |++....... ......||+++.+ +++... +.... .....+.|+|||+ +
T Consensus 127 ~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~-~~~~~~l~~~~~~-~~~~~~--~~~~~-----~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYS-TNPLGGVYYVSPD-FRTVTP--IIQNI-----SVANGIALSTDEKVL 196 (333)
T ss_dssp EECSSSSCCCEEEEEECTTSC-EEEEECCCBT-TBCCEEEEEECTT-SCCEEE--EEEEE-----SSEEEEEECTTSSEE
T ss_pred EEccCccCCcccceEECCCCC-EEEEeccccc-cCCCceEEEEeCC-CCEEEE--eecCC-----CcccceEECCCCCEE
Confidence 432 123455679999997 5555432110 0123569998876 555432 22221 2235688999998 5
Q ss_pred EEEEecCCCceEEEEEEcCC-C-eEEEeecc-CccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCC
Q 004816 312 FFVTDRKNGFWNLHKWIESN-N-EVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 388 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~-g-~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g 388 (729)
++.... ...|+++++++ + ....+... ...... .. ....+.+. .++.+++....++ .|++++.+++
T Consensus 197 ~v~~~~---~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~--~~~~i~~d----~~G~l~v~~~~~~--~v~~~d~~g~ 264 (333)
T 2dg1_A 197 WVTETT---ANRLHRIALEDDGVTIQPFGATIPYYFTG-HE--GPDSCCID----SDDNLYVAMYGQG--RVLVFNKRGY 264 (333)
T ss_dssp EEEEGG---GTEEEEEEECTTSSSEEEEEEEEEEECCS-SS--EEEEEEEB----TTCCEEEEEETTT--EEEEECTTSC
T ss_pred EEEeCC---CCeEEEEEecCCCcCcccccceEEEecCC-CC--CCCceEEC----CCCCEEEEEcCCC--EEEEECCCCC
Confidence 554432 34688888853 2 33222100 000000 00 11234443 3345655554334 5777788766
Q ss_pred ceEeeccCCc------ceEEe--eeeCCEEEEEEeCC--CCCceEEEEEcCC
Q 004816 389 SLSLLDIPFT------DIDNI--TLGNDCLFVEGASG--VEPSSVAKVTLDD 430 (729)
Q Consensus 389 ~~~~lt~~~~------~v~~~--~~~~~~~~~~~~~~--~~~~~ly~~d~~~ 430 (729)
..+.+..+.. .+..+ .++++.+++..... .....||++++..
T Consensus 265 ~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 265 PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEeccc
Confidence 6666654432 23444 33344555544432 2234688887654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.82 E-value=8e-07 Score=93.52 Aligned_cols=105 Identities=7% Similarity=0.020 Sum_probs=63.7
Q ss_pred CCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCC-CCCCcceEEEEEEcCCCceE-EeeeC-
Q 004816 164 DQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQ-VLVSG- 239 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~-~~~~~~~~l~~~dl~~g~~~-~lt~~- 239 (729)
++.++++|.++ ++.. .+..+ ... .+++||||++++.+.+.... ........|.++|+++++.. .+.-.
T Consensus 30 d~~v~v~D~~t--~~~~~~i~~g-----~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 30 ESRVHVYDYTN--GKFLGMVPTA-----FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GCEEEEEETTT--CCEEEEEECC-----EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred cCeEEEEECCC--CeEEEEecCC-----CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 45899999887 5443 33222 233 78999999987665431100 00001246899999987764 33322
Q ss_pred -----CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe
Q 004816 240 -----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV 283 (729)
Q Consensus 240 -----~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~ 283 (729)
.....+.++||||++|+...... ...|.++|++ +++.
T Consensus 102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~------~~~v~v~d~~-~~~~ 143 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDGKFIVLQNASP------ATSIGIVDVA-KGDY 143 (361)
T ss_dssp TBCCBCCCGGGEEECTTSSEEEEEEESS------SEEEEEEETT-TTEE
T ss_pred cccccCCCcceEEECCCCCEEEEECCCC------CCeEEEEECC-CCcE
Confidence 12334678999999987665321 2458888887 5543
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-09 Score=121.50 Aligned_cols=110 Identities=19% Similarity=0.181 Sum_probs=79.6
Q ss_pred CCEEEEEcCCCCCCcccc-chhhhHHHhhCCcEEEEecCCCCC-CCchhHHHhhccCCCcccHHHHHHHHHHHHhC---C
Q 004816 492 PPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGST-GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---G 566 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~-~~~~~~~la~~G~~v~~~d~rGs~-g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~ 566 (729)
.|+||++|||++...... .....+.|+++|+.|+.+|||.+. |+..... ....+...+.|+.++++|+.++ .
T Consensus 115 ~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~~~---~~~~~n~gl~D~~~al~wv~~~i~~f 191 (551)
T 2fj0_A 115 LPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSLNS---TSVPGNAGLRDMVTLLKWVQRNAHFF 191 (551)
T ss_dssp EEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCHHHHHCCCSS---SSCCSCHHHHHHHHHHHHHHHHTGGG
T ss_pred CCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCCccccccCcc---cCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 799999999865433222 122456778899999999999531 1111100 0112234589999999999876 3
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccc
Q 004816 567 KADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGV 604 (729)
Q Consensus 567 ~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~ 604 (729)
..|+++|.|+|+|+||.+++.++. .+..|+++|+.+|.
T Consensus 192 ggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 232 (551)
T 2fj0_A 192 GGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGT 232 (551)
T ss_dssp TEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCC
T ss_pred CCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCC
Confidence 468999999999999999988886 35689999999985
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=3.8e-07 Score=97.29 Aligned_cols=195 Identities=11% Similarity=0.030 Sum_probs=116.5
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-------------------CCeeeeeeeCCCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG-------------------SDFYAFPRMDPRG 252 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~-------------------~~~~~~~~~SPDG 252 (729)
.+...+|||||++|+...+ ..+.++++.+++......+ .......+|||||
T Consensus 66 ~V~~v~fspdg~~la~g~~----------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCN----------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp CCCEEEECTTSSEEEEECB----------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred EEEEEEECCCCCEEEEEcC----------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence 3467789999998876532 2356678777765332211 1125678999999
Q ss_pred CeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCC
Q 004816 253 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 253 ~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g 332 (729)
++|+..+. ...|.++|+. +++. ...+.+.. ..+..+.|+|||+.++.... .+ .|.++|+.++
T Consensus 136 ~~l~s~~~--------d~~i~iwd~~-~~~~--~~~~~~h~----~~v~~~~~~p~~~~l~s~s~-d~--~v~iwd~~~~ 197 (393)
T 1erj_A 136 KFLATGAE--------DRLIRIWDIE-NRKI--VMILQGHE----QDIYSLDYFPSGDKLVSGSG-DR--TVRIWDLRTG 197 (393)
T ss_dssp SEEEEEET--------TSCEEEEETT-TTEE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TS--EEEEEETTTT
T ss_pred CEEEEEcC--------CCeEEEEECC-CCcE--EEEEccCC----CCEEEEEEcCCCCEEEEecC-CC--cEEEEECCCC
Confidence 99987662 2348999988 6654 45566665 56778899999994444443 33 4666788888
Q ss_pred eEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-Eeec-------cCCcceEEe-
Q 004816 333 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLD-------IPFTDIDNI- 403 (729)
Q Consensus 333 ~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~~lt-------~~~~~v~~~- 403 (729)
+..........+....|.+ .++.++++...++...|| |..+++. ..+. .....+..+
T Consensus 198 ~~~~~~~~~~~v~~~~~~~------------~~~~~l~~~s~d~~v~iw--d~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 198 QCSLTLSIEDGVTTVAVSP------------GDGKYIAAGSLDRAVRVW--DSETGFLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp EEEEEEECSSCEEEEEECS------------TTCCEEEEEETTSCEEEE--ETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred eeEEEEEcCCCcEEEEEEC------------CCCCEEEEEcCCCcEEEE--ECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence 7654443322222223332 345566677777876666 6666653 3332 223456666
Q ss_pred eeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 404 TLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
..+++.+++.++.. ..+.++|+...
T Consensus 264 ~~~~g~~l~s~s~d---~~v~~wd~~~~ 288 (393)
T 1erj_A 264 FTRDGQSVVSGSLD---RSVKLWNLQNA 288 (393)
T ss_dssp ECTTSSEEEEEETT---SEEEEEEC---
T ss_pred ECCCCCEEEEEeCC---CEEEEEECCCC
Confidence 44455555555543 35667776654
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-08 Score=103.53 Aligned_cols=196 Identities=12% Similarity=0.102 Sum_probs=109.3
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHH-HHHHHhCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADE 570 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~ 570 (729)
.|.|+++||.++. ...|..++..| ..+|.|+.+|++|.++ ... .. ..++++... ++.+.+.. ..
T Consensus 101 ~~~l~~lhg~~~~--~~~~~~l~~~L-~~~~~v~~~d~~g~~~---~~~--~~-----~~~~~~a~~~~~~i~~~~--~~ 165 (329)
T 3tej_A 101 GPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIIGIQSPRPNG---PMQ--TA-----ANLDEVCEAHLATLLEQQ--PH 165 (329)
T ss_dssp SCEEEEECCTTSC--CGGGGGGGGTS-CTTCEEEEECCCTTTS---HHH--HC-----SSHHHHHHHHHHHHHHHC--SS
T ss_pred CCcEEEEeCCccc--chHHHHHHHhc-CCCCeEEEeeCCCCCC---CCC--CC-----CCHHHHHHHHHHHHHHhC--CC
Confidence 4679999997443 45566666666 5689999999997533 211 11 123333332 33333321 23
Q ss_pred CcEEEEEcChHHHHHHHHHh----CCCcceEEEEeccccChhHHhhhc-------c------hhhhhhhhhhcC--Chh-
Q 004816 571 KRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADLSMLRAET-------H------KFESRYIDNLVG--SEK- 630 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~~~d~~~~~~~~-------~------~~~~~~~~~~~~--~~~- 630 (729)
+++.++|||+||.+++.++. ++++++.++++.+.......+... . .....+...... ..+
T Consensus 166 ~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (329)
T 3tej_A 166 GPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTSTEL 245 (329)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHTTCCCSCCHH
T ss_pred CCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHhccccccHHH
Confidence 68999999999999988774 789999999988765432211000 0 000000000000 000
Q ss_pred ------hhhhc-C--cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc-cCCcccHHHHH
Q 004816 631 ------DYYEK-S--PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-FRKAENIKFTL 700 (729)
Q Consensus 631 ------~~~~~-s--p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~~~~~~~~~~~ 700 (729)
.+... . .......+.+|++++.|.+|..++......+.+.. .+++++.++ ++|. +..++......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~~~~d~~~~~~~~~~w~~~~----~~~~~~~v~-g~H~~~~~~~~~~~ia 320 (329)
T 3tej_A 246 FTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWI----AELDIYRQD-CAHVDIISPGTFEKIG 320 (329)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEGGGCCTTCCHHHHHTTTE----EEEEEEEES-SCGGGGGSTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEeccCCCCCCCchhhHHHhc----CCcEEEEec-CChHHhCCChHHHHHH
Confidence 01100 0 00113456789999999999877665443332222 367899998 4675 33444444455
Q ss_pred HHHHHHH
Q 004816 701 EQQMVFF 707 (729)
Q Consensus 701 ~~~~~fl 707 (729)
+.+.+|+
T Consensus 321 ~~l~~~L 327 (329)
T 3tej_A 321 PIIRATL 327 (329)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.81 E-value=9.2e-07 Score=99.90 Aligned_cols=285 Identities=7% Similarity=-0.030 Sum_probs=157.0
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCC-CCcccCCCCCcccccccccC-CceEEEEC--C-EEEEEECC
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGD-EPSDITPKEYAVRTTAQEYG-GGAFRIFG--D-TVIFSNYK 163 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g-~~~~l~~~~~~~~~~~~~~~-~~~~~~~~--~-~i~~~~~~ 163 (729)
.+..+.|+| ++.+++.. ++...+|........ +....+.. +... +.+..+++ + ..+++...
T Consensus 20 ~v~~~~~spdg~~l~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~--------h~~~~v~~~~~sp~~~~~~l~s~~~ 86 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-----GKSAFVRCLDDGDSKVPPVVQFTG--------HGSSVVTTVKFSPIKGSQYLCSGDE 86 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-----TTEEEEEECCSSCCSSCSEEEECT--------TTTSCEEEEEECSSTTCCEEEEEET
T ss_pred ceeEEEECCCCCEEEEec-----CCeEEEEECCCCCCccccceEEec--------CCCceEEEEEECcCCCCCEEEEecC
Confidence 567899999 77777754 356667765422000 11111111 1222 33444544 3 45555566
Q ss_pred CCcEEEEeCCCCCC------CC---eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 164 DQRLYKHSIDSKDS------SP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 164 ~~~l~~~d~~~~~~------~~---~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
++.|.+|++.+ + .. ..+... ...+...+|+|||++|+....+... ...|++++. +....
T Consensus 87 dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~~~~~-----~~~v~~~d~-~~~~~ 154 (615)
T 1pgu_A 87 SGKVIVWGWTF--DKESNSVEVNVKSEFQVL----AGPISDISWDFEGRRLCVVGEGRDN-----FGVFISWDS-GNSLG 154 (615)
T ss_dssp TSEEEEEEEEE--EGGGTEEEEEEEEEEECC----SSCEEEEEECTTSSEEEEEECCSSC-----SEEEEETTT-CCEEE
T ss_pred CCEEEEEeCCC--Ccccccccccccchhhcc----cccEEEEEEeCCCCEEEEeccCCCC-----ccEEEEEEC-CCcce
Confidence 88899999864 3 11 222222 3456788999999998877654321 256887773 23344
Q ss_pred EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccc---cccCceeCCC-Cc
Q 004816 235 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE---SPTEPKWSSK-GE 310 (729)
Q Consensus 235 ~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~---~~~~~~wspD-G~ 310 (729)
.+...........|+|||+.++++... ...|.++|+. +++. ...+.... . .+..+.|+|| |+
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-------d~~v~vwd~~-~~~~--~~~~~~~~----~~~~~v~~~~~~~~~~~ 220 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGD-------DGSVVFYQGP-PFKF--SASDRTHH----KQGSFVRDVEFSPDSGE 220 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEET-------TTEEEEEETT-TBEE--EEEECSSS----CTTCCEEEEEECSTTCC
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeC-------CCcEEEEeCC-Ccce--eeeecccC----CCCceEEEEEECCCCCC
Confidence 454455567788999999954444422 3458999987 5554 44455444 4 5678899999 88
Q ss_pred EEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 311 LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 311 l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
+++.... .+ .|.++|+.+++..... ........+. ..+.|. +++ ++++...++...+| ++.+++
T Consensus 221 ~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v-----~~~~~~----~~~-~l~~~~~d~~i~~w--d~~~~~ 285 (615)
T 1pgu_A 221 FVITVGS-DR--KISCFDGKSGEFLKYIEDDQEPVQGGI-----FALSWL----DSQ-KFATVGADATIRVW--DVTTSK 285 (615)
T ss_dssp EEEEEET-TC--CEEEEETTTCCEEEECCBTTBCCCSCE-----EEEEES----SSS-EEEEEETTSEEEEE--ETTTTE
T ss_pred EEEEEeC-CC--eEEEEECCCCCEeEEecccccccCCce-----EEEEEc----CCC-EEEEEcCCCcEEEE--ECCCCc
Confidence 5555444 33 4677788777655443 1000011111 123332 233 44555566665554 666665
Q ss_pred eE-eeccC----CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 390 LS-LLDIP----FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 390 ~~-~lt~~----~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.. .+... ...+..+ .++++. ++..+.. ..++.+++..++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~---g~i~~~d~~~~~ 330 (615)
T 1pgu_A 286 CVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLD---GTLNFYELGHDE 330 (615)
T ss_dssp EEEEEECCTTCGGGCEEEEEEEETTE-EEEEETT---SCEEEEETTEEE
T ss_pred EEEEEcCCCCcccCceeEEEeCCCCe-EEEEECC---CCEEEEECCCCc
Confidence 43 33333 1234444 444444 4444432 367777777654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.6e-06 Score=88.26 Aligned_cols=269 Identities=10% Similarity=0.029 Sum_probs=151.5
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCC
Q 004816 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (729)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~ 165 (729)
...+..+.|+| ++.+ .+.. .++...+|..... +....+... .....+..++++ ..+.+...++
T Consensus 64 ~~~V~~~~~s~d~~~l-~s~s---~Dg~v~vWd~~~~---~~~~~~~~~--------~~~v~~~~~sp~g~~lasg~~d~ 128 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRI-VSSS---QDGKVIVWDSFTT---NKEHAVTMP--------CTWVMACAYAPSGCAIACGGLDN 128 (354)
T ss_dssp SSCEEEEEECTTSSEE-EEEE---TTSEEEEEETTTC---CEEEEEECS--------SSCCCEEEECTTSSEEEEESTTS
T ss_pred CCeEEEEEECCCCCEE-EEEe---CCCeEEEEECCCC---CcceEEecC--------CCCEEEEEECCCCCEEEEeeCCC
Confidence 34567889999 5444 4433 4677777764332 211111111 111222333322 3455566778
Q ss_pred cEEEEeCCCCCCCC-------eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee
Q 004816 166 RLYKHSIDSKDSSP-------LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS 238 (729)
Q Consensus 166 ~l~~~d~~~~~~~~-------~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~ 238 (729)
.+.++++.. ... ..+... ...+....|+|+++.|+....+ ..|.++|+.+++......
T Consensus 129 ~i~v~~~~~--~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~t~s~D---------~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 129 KCSVYPLTF--DKNENMAAKKKSVAMH----TNYLSACSFTNSDMQILTASGD---------GTCALWDVESGQLLQSFH 193 (354)
T ss_dssp EEEEEECCC--CTTCCSGGGCEEEEEC----SSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCEEEEEE
T ss_pred CEEEEEEec--cccccccccceeeecc----CCcEEEEEEeCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEEc
Confidence 888888764 211 112112 2345678899999988766543 468899999887654433
Q ss_pred -CCCeeeeeeeCC--CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEE
Q 004816 239 -GSDFYAFPRMDP--RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 315 (729)
Q Consensus 239 -~~~~~~~~~~SP--DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~ 315 (729)
.........|+| +|+.|+..+. ...|.++|+. +++. ...+.... ..+..++|+|||+++++.
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~--------Dg~v~~wd~~-~~~~--~~~~~~h~----~~v~~v~~~p~~~~l~s~ 258 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGC--------DKKAMVWDMR-SGQC--VQAFETHE----SDVNSVRYYPSGDAFASG 258 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEET--------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECTTSSEEEEE
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeC--------CCeEEEEECC-CCcE--EEEecCCC----CCeEEEEEeCCCCEEEEE
Confidence 333445566766 6787776552 2348999998 6764 44555554 566788999999955555
Q ss_pred ecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeec
Q 004816 316 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLD 394 (729)
Q Consensus 316 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt 394 (729)
.. .+. |.++|+.+++...+....... .....+.|.+ ++ .++++...++..+|| |+.+++ +..+.
T Consensus 259 s~-D~~--v~lwd~~~~~~~~~~~~~~~~------~~~~~~~~s~---~g-~~l~~g~~d~~i~vw--d~~~~~~~~~l~ 323 (354)
T 2pbi_B 259 SD-DAT--CRLYDLRADREVAIYSKESII------FGASSVDFSL---SG-RLLFAGYNDYTINVW--DVLKGSRVSILF 323 (354)
T ss_dssp ET-TSC--EEEEETTTTEEEEEECCTTCC------SCEEEEEECT---TS-SEEEEEETTSCEEEE--ETTTCSEEEEEC
T ss_pred eC-CCe--EEEEECCCCcEEEEEcCCCcc------cceeEEEEeC---CC-CEEEEEECCCcEEEE--ECCCCceEEEEE
Confidence 44 344 555677776554443221100 0112334442 44 455666667766666 665554 44555
Q ss_pred cCCcceEEe-eeeCCEEEEEEeC
Q 004816 395 IPFTDIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 395 ~~~~~v~~~-~~~~~~~~~~~~~ 416 (729)
.....|..+ ..+++.+++.++.
T Consensus 324 ~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 324 GHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp CCSSCEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEECCCCCEEEEEcC
Confidence 556667777 4445555555553
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-09 Score=118.84 Aligned_cols=126 Identities=16% Similarity=0.121 Sum_probs=85.5
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hhhhHHHhh-CCcEEEEecCCCC-CCCchhHHHhhccCCC
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYGGS-TGYGREFRERLLGRWG 548 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la~-~G~~v~~~d~rGs-~g~g~~~~~~~~~~~~ 548 (729)
+...+|.|.. ..++.|+||++|||++....... ......|++ .|+.|+.+|||.. -|+..... .....+
T Consensus 93 l~lnv~~P~~------~~~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~--~~~~~~ 164 (529)
T 1p0i_A 93 LYLNVWIPAP------KPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPG--NPEAPG 164 (529)
T ss_dssp CEEEEEEESS------CCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTT--CTTSCS
T ss_pred CeEEEeeCCC------CCCCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEecccccccccccCCC--CCCCcC
Confidence 3445566754 12568999999998654333221 123456666 7999999999942 12111100 000112
Q ss_pred cccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEEecccc
Q 004816 549 IVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA 605 (729)
Q Consensus 549 ~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---~~~~~a~v~~~~~~ 605 (729)
...+.|+..+++|+.++ ...|+++|.|+|+|+||.+++.++.. ...|+++|+.+|..
T Consensus 165 n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 227 (529)
T 1p0i_A 165 NMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 227 (529)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred cccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCcc
Confidence 23489999999999875 35699999999999999999888863 46899999999864
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.3e-09 Score=111.75 Aligned_cols=110 Identities=10% Similarity=-0.032 Sum_probs=79.0
Q ss_pred CCCEEEEEcCCCCCCccccchh-hhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~-~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
..|+||++||..... ...|.. .+..|+++ ||.|+++|++|.+.... ..... .. ....+|+.+++++|.++..+
T Consensus 69 ~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~~--~~~~~-~~-~~~~~dl~~~i~~L~~~~g~ 143 (452)
T 1w52_X 69 SRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAEY--TQAVQ-NI-RIVGAETAYLIQQLLTELSY 143 (452)
T ss_dssp TSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSCH--HHHHH-HH-HHHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEeccccccccc--HHHHH-hH-HHHHHHHHHHHHHHHHhcCC
Confidence 458999999985543 233444 55667665 99999999997654331 11110 00 11257788888988765334
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
+.+++.|+|||+||.+|+.++. +|+++++++++.|..
T Consensus 144 ~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 144 NPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 5689999999999999999998 999999999998754
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-09 Score=119.14 Aligned_cols=128 Identities=20% Similarity=0.171 Sum_probs=87.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hhhhHHHh-hCCcEEEEecCCCC-CCCchhHHHhhc
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWT-SRGWAFVDVNYGGS-TGYGREFRERLL 544 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la-~~G~~v~~~d~rGs-~g~g~~~~~~~~ 544 (729)
|...+ .+|.|.. ..++.|+||++|||++....... ......|+ +.|+.|+.+|||.. -|+..... ..
T Consensus 93 dcl~l--nv~~P~~------~~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~--~~ 162 (537)
T 1ea5_A 93 DCLYL--NIWVPSP------RPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHG--SQ 162 (537)
T ss_dssp CCCEE--EEEECSS------CCSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCTT--CS
T ss_pred cCCeE--EEeccCC------CCCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCccccccccCCC--CC
Confidence 55444 4566754 13568999999998754333221 12345666 78999999999942 11111000 00
Q ss_pred cCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEEecccc
Q 004816 545 GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA 605 (729)
Q Consensus 545 ~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---~~~~~a~v~~~~~~ 605 (729)
...+...+.|+.++++|+.++ ...|+++|.|+|+|+||.+++.++.. ...|+++|+.+|..
T Consensus 163 ~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 229 (537)
T 1ea5_A 163 EAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 229 (537)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred CCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCc
Confidence 111223489999999999886 24699999999999999999888763 56899999999864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.79 E-value=9.1e-07 Score=95.19 Aligned_cols=241 Identities=11% Similarity=0.004 Sum_probs=138.0
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
...++|+.+.++.+. .++.|++||+.+ ++..++....+ ....+...+|||||++|+....+. .|.++
T Consensus 108 ~~~l~wS~~n~lAvg-ld~tV~lWd~~t--g~~~~~~~~~~-~~~~V~sv~fspdg~~lasgs~Dg---------~v~iW 174 (420)
T 4gga_A 108 LNLVDWSSGNVLAVA-LDNSVYLWSASS--GDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSA---------EVQLW 174 (420)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTT--CCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETTS---------CEEEE
T ss_pred ceeEEECCCCEEEEE-eCCEEEEEECCC--CCEEEEEEecC-CCCcEEEEEECCCCCEEEEEECCC---------eEEEE
Confidence 344666655444443 477899999998 76555432211 134578899999999877655432 35555
Q ss_pred EcCCCceEEee------------------------------------------eCCCeeeeeeeCCCCCeEEEEEecCCC
Q 004816 227 ALNGQNIQVLV------------------------------------------SGSDFYAFPRMDPRGERMAWIEWHHPN 264 (729)
Q Consensus 227 dl~~g~~~~lt------------------------------------------~~~~~~~~~~~SPDG~~la~~~~~~~~ 264 (729)
|+.+++..... ..........|+|+|+.|+....
T Consensus 175 d~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~---- 250 (420)
T 4gga_A 175 DVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN---- 250 (420)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----
T ss_pred EcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----
Confidence 65554332111 11123345677888887765552
Q ss_pred CCCCCcEEEEEEecCCCCee--eeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccC
Q 004816 265 MPWDKAELWVGYISENGDVY--KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD 341 (729)
Q Consensus 265 ~~~~~~~l~~~d~~~~g~~~--~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~ 341 (729)
...+.++++. +++.. ......... ..+....|+|++. ++.+... .....|.++|..+++........
T Consensus 251 ----D~~v~i~~~~-~~~~~~~~~~~~~~~~----~~V~~~~~~p~~~~~la~~~g-s~D~~I~iwd~~t~~~~~~~~~~ 320 (420)
T 4gga_A 251 ----DNLVNVWPSA-PGEGGWVPLQTFTQHQ----GAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAVDAH 320 (420)
T ss_dssp ----TSCEEEEESS-CCSSCSCCSEEECCCS----SCEEEEEECTTCTTEEEEEEC-TTTCEEEEEETTTTEEEEEEECS
T ss_pred ----cccceEEeec-cccccceeeeeecccC----CceeeeeeCCCcccEEEEEee-cCCCEEEEEeCCccccceeeccc
Confidence 2337777776 44321 123333333 4566788999887 7665443 23356777899888766555333
Q ss_pred ccccCCcccccCcceeeeeecCCCCEEEEEEE-ECCeEEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEeCCC
Q 004816 342 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGV 418 (729)
Q Consensus 342 ~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~-~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~ 418 (729)
..+....|.+ +++.++..+. .++. |+++|..+++ +..+..+...|..+ ..+++.+++.++.+.
T Consensus 321 ~~v~~~~~~~------------~~~~lv~~sg~~d~~--I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~ 386 (420)
T 4gga_A 321 SQVCSILWSP------------HYKELISGHGFAQNQ--LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 386 (420)
T ss_dssp SCEEEEEEET------------TTTEEEEEECTTTCC--EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred cceeeeeecC------------CCCeEEEEEecCCCE--EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 3333334443 6666665543 3454 5555766665 44566556678877 455556666665432
Q ss_pred CCceEEEEEcCCC
Q 004816 419 EPSSVAKVTLDDH 431 (729)
Q Consensus 419 ~~~~ly~~d~~~~ 431 (729)
.|.++++...
T Consensus 387 ---tvriWdv~~~ 396 (420)
T 4gga_A 387 ---TLRLWRCFEL 396 (420)
T ss_dssp ---EEEEECCSCS
T ss_pred ---eEEEEECCCC
Confidence 4555555443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-06 Score=89.33 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=92.4
Q ss_pred ceEEEECC-EEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 148 ~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.+..++++ .++++...++.|.+||+.+ ++. ..+... ...+...+|+|||+.|+....+ ..|.+
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~--~~~~~~~~~h----~~~v~~v~~sp~~~~l~s~~~d---------~~i~~ 144 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRT--GTTYKRFVGH----QSEVYSVAFSPDNRQILSAGAE---------REIKL 144 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTS--SCEEEEEECC----CSCEEEEEECSSTTEEEEEETT---------SCEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCC--CcEEEEEcCC----CCcEEEEEECCCCCEEEEEcCC---------CEEEE
Confidence 34444433 4566777788999999987 543 344433 3456788999999987766543 35888
Q ss_pred EEcCCCceEEee---eCCCeeeeeeeCCCC----------CeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCC
Q 004816 226 IALNGQNIQVLV---SGSDFYAFPRMDPRG----------ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF 292 (729)
Q Consensus 226 ~dl~~g~~~~lt---~~~~~~~~~~~SPDG----------~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~ 292 (729)
+|+.+.....+. .........+|+|++ +.|+..+. ...|.++|.. +.. ...+.+.
T Consensus 145 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~--------d~~i~iwd~~--~~~--~~~~~~h 212 (343)
T 2xzm_R 145 WNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW--------DGRLKVWNTN--FQI--RYTFKAH 212 (343)
T ss_dssp EESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET--------TSEEEEEETT--TEE--EEEEECC
T ss_pred EeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC--------CCEEEEEcCC--Cce--eEEEcCc
Confidence 898754333332 123345667899987 55655542 3458888843 332 3344455
Q ss_pred CCCccccccCceeCCCCcEEEEEecCCCceEEEEEEc
Q 004816 293 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 293 ~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~ 329 (729)
. ..+..++|+|||++++.... .+ .|.++|+
T Consensus 213 ~----~~v~~~~~s~~g~~l~sgs~-dg--~v~iwd~ 242 (343)
T 2xzm_R 213 E----SNVNHLSISPNGKYIATGGK-DK--KLLIWDI 242 (343)
T ss_dssp S----SCEEEEEECTTSSEEEEEET-TC--EEEEEES
T ss_pred c----ccceEEEECCCCCEEEEEcC-CC--eEEEEEC
Confidence 4 56677899999995555444 34 4555666
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-06 Score=95.04 Aligned_cols=171 Identities=10% Similarity=0.115 Sum_probs=95.3
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceEEe--------eeCCCeeeeeeeCCCC-CeEEEEEe
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQVL--------VSGSDFYAFPRMDPRG-ERMAWIEW 260 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~~l--------t~~~~~~~~~~~SPDG-~~la~~~~ 260 (729)
..+...+|+|||+.|+.. . + ..|.++|+.. ++...+ ..........+|+||| +.|+..+.
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-D-D--------LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-C-S--------SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred cceEEEEEcCCCCEEEEe-C-C--------CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence 445778899999987754 3 2 4688999983 333332 1233456778999999 77766552
Q ss_pred cCCCCCCCCcEEEEEEecCCCCee--eeEEecCCCCCccc------------cccCceeCCCCcEEEEEecCCCceEEEE
Q 004816 261 HHPNMPWDKAELWVGYISENGDVY--KRVCVAGFDPTIVE------------SPTEPKWSSKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 261 ~~~~~~~~~~~l~~~d~~~~g~~~--~~~~~~~~~~~~~~------------~~~~~~wspDG~l~~~~~~~~g~~~l~~ 326 (729)
...|.++|+. +++.. ....+.... . .+..+.|+|||++++.... ..|.+
T Consensus 248 --------dg~i~iwd~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~i 310 (447)
T 3dw8_B 248 --------KGTIRLCDMR-ASALCDRHSKLFEEPE----DPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKV 310 (447)
T ss_dssp --------TSCEEEEETT-TCSSSCTTCEEECCC---------CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEE
T ss_pred --------CCeEEEEECc-CCccccceeeEeccCC----CccccccccccCceEEEEEECCCCCEEEEeeC----CeEEE
Confidence 2348999988 55421 123444432 2 5677899999995444432 45677
Q ss_pred EEcCC-CeEEEeeccCccccCC-------cccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec
Q 004816 327 WIESN-NEVLAIYSLDAEFSRP-------LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 327 ~d~~~-g~~~~l~~~~~~~~~~-------~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
+|+.+ ++.............. .-......+.|.+ +++.| ++...+|...| +|+.+++...+.
T Consensus 311 wd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~---~~~~l-~s~s~dg~v~i--wd~~~~~~~~~~ 380 (447)
T 3dw8_B 311 WDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG---SDSVV-MTGSYNNFFRM--FDRNTKRDITLE 380 (447)
T ss_dssp EETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT---TSSEE-EEECSTTEEEE--EETTTCCEEEEE
T ss_pred EeCCCCccccceeeccccccccccccccccccccceEEEECC---CCCEE-EEeccCCEEEE--EEcCCCcceeee
Confidence 78765 4432222111110000 0000001134443 55544 56666775555 477777765443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-06 Score=100.98 Aligned_cols=242 Identities=14% Similarity=0.109 Sum_probs=138.1
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcEE
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~ 168 (729)
+.++.++| +..+..+.. .++...+|.....+ ...... ..+-.-|.....+..++.+ .++++...++.|.
T Consensus 385 V~~v~~~~~~~~~l~s~s---~D~~i~~W~~~~~~--~~~~~~----~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSAS---RDKSIILWKLTKDD--KAYGVA----QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEEECCTTCCSEEEEEE---TTSEEEEEECCCST--TCSCEE----EEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEEEEecCCCCCEEEEEe---CCCcEEEEEccCCC--cccccc----cceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 44666776 556655554 45777788765431 110000 0000112223344445433 5566666788999
Q ss_pred EEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee----CCCee
Q 004816 169 KHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS----GSDFY 243 (729)
Q Consensus 169 ~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~----~~~~~ 243 (729)
+||+.+ +. .+.+..+ ...+...+|||||+.|+....+ ..|.++|+.+.....+.. .....
T Consensus 456 vwd~~~--~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~s~D---------~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 456 LWDLAA--GVSTRRFVGH----TKDVLSVAFSLDNRQIVSASRD---------RTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEETTT--TEEEEEEECC----SSCEEEEEECTTSSCEEEEETT---------SCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred EEECCC--CcceeEEeCC----CCCEEEEEEeCCCCEEEEEeCC---------CEEEEEECCCCcceeeccCCCCCCCcE
Confidence 999987 43 3444443 3457788999999987766553 357788887554444432 12345
Q ss_pred eeeeeCCCCC--eEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCc
Q 004816 244 AFPRMDPRGE--RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF 321 (729)
Q Consensus 244 ~~~~~SPDG~--~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~ 321 (729)
...+|+|++. .|+-.+ . ...|.++|+. +++. ...+.++. ..+..++|+|||+++++... .+.
T Consensus 521 ~~~~~~~~~~~~~l~s~s-~-------d~~v~vwd~~-~~~~--~~~~~~h~----~~v~~v~~spdg~~l~sg~~-Dg~ 584 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSAS-W-------DKTVKVWNLS-NCKL--RSTLAGHT----GYVSTVAVSPDGSLCASGGK-DGV 584 (694)
T ss_dssp EEEEECSCSSSCEEEEEE-T-------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TSB
T ss_pred EEEEEeCCCCcceEEEEe-C-------CCeEEEEECC-CCcE--EEEEcCCC----CCEEEEEEeCCCCEEEEEeC-CCe
Confidence 6789999984 344333 2 2348899998 6654 44555555 56778899999995555544 344
Q ss_pred eEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 322 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
|.++|+.+++..........+ ..+.|.+ ++ .++.... ++. |.++|+.+++.
T Consensus 585 --i~iwd~~~~~~~~~~~~~~~v---------~~~~~sp---~~-~~l~~~~-~~~--i~iwd~~~~~~ 635 (694)
T 3dm0_A 585 --VLLWDLAEGKKLYSLEANSVI---------HALCFSP---NR-YWLCAAT-EHG--IKIWDLESKSI 635 (694)
T ss_dssp --CEEEETTTTEEEECCBCSSCE---------EEEEECS---SS-SEEEEEE-TTE--EEEEETTTTEE
T ss_pred --EEEEECCCCceEEEecCCCcE---------EEEEEcC---CC-cEEEEEc-CCC--EEEEECCCCCC
Confidence 555678777644332222112 2334442 44 3444443 443 55667777654
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=100.57 Aligned_cols=94 Identities=9% Similarity=0.004 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.||++||.+++ ...|..++..|. +.|+.+|+++... ...++++.+.+..++.... ..+
T Consensus 24 ~~~l~~~hg~~~~--~~~~~~~~~~L~---~~v~~~d~~~~~~--------------~~~~~~~a~~~~~~i~~~~-~~~ 83 (283)
T 3tjm_A 24 ERPLFLVHPIEGS--TTVFHSLASRLS---IPTYGLQCTRAAP--------------LDSIHSLAAYYIDCIRQVQ-PEG 83 (283)
T ss_dssp SCCEEEECCTTCC--SGGGHHHHHHCS---SCEEEECCCTTSC--------------CSCHHHHHHHHHHHHTTTC-CSS
T ss_pred CCeEEEECCCCCC--HHHHHHHHHhcC---ceEEEEecCCCCC--------------CCCHHHHHHHHHHHHHHhC-CCC
Confidence 4568899998443 455666777665 9999999964211 1224444433333333211 236
Q ss_pred cEEEEEcChHHHHHHHHHh-C---CCcce---EEEEecccc
Q 004816 572 RLCITGGSAGGYTTLAALA-F---RDTFK---AGASLYGVA 605 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~---~~~~~---a~v~~~~~~ 605 (729)
++.++||||||.+|+.++. . +++++ .++++.+..
T Consensus 84 ~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~~ 124 (283)
T 3tjm_A 84 PYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGSP 124 (283)
T ss_dssp CCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCCT
T ss_pred CEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCCc
Confidence 8999999999999998886 3 78888 888887653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-06 Score=91.98 Aligned_cols=255 Identities=8% Similarity=0.010 Sum_probs=134.7
Q ss_pred CCEEEEEECCC----CcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCC-CCCCcceEEEEEE
Q 004816 154 GDTVIFSNYKD----QRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIA 227 (729)
Q Consensus 154 ~~~i~~~~~~~----~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~-~~~~~~~~l~~~d 227 (729)
+..++..+... +.|.++|+.+ .+. ..+..+ ... .+.+||||++|+........ ........|.++|
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t--~~vv~~I~vG-----~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGST--GRILGMTDGG-----FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEEC-----SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEECCCcCCCCCeEEEEECCC--CEEEEEEECC-----CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 34555555433 6899999987 433 333333 123 68899999986655321000 0000025699999
Q ss_pred cCCCceE-EeeeC-C------CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCC-------
Q 004816 228 LNGQNIQ-VLVSG-S------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF------- 292 (729)
Q Consensus 228 l~~g~~~-~lt~~-~------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~------- 292 (729)
..++++. .+.-+ . ..-.+..+||||++|+...... ...|.++|+. +++......+.+.
T Consensus 156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~------~~~VsVID~~-t~kvv~~I~v~g~~~~~p~g 228 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP------APAVGVVDLE-GKTFDRMLDVPDCYHIFPAS 228 (426)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS------SCEEEEEETT-TTEEEEEEECCSEEEEEEEE
T ss_pred CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC------CCeEEEEECC-CCeEEEEEEcCCceeeccCC
Confidence 9998764 34322 1 1234679999999987765321 2458888887 5554221111100
Q ss_pred ---------CCCc---------c-------------ccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeecc
Q 004816 293 ---------DPTI---------V-------------ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL 340 (729)
Q Consensus 293 ---------~~~~---------~-------------~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~ 340 (729)
+..+ . .....+.+++||+ ++|.... ..++++|..++..+.+...
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~----g~V~ViD~~~~~~~v~~~~ 304 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT----GKIFQADLTAEGATFRAPI 304 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT----SEEEEEEECSSCEEECCCE
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC----CcEEEEeccCCceEEeeee
Confidence 0000 0 0001223466665 5554422 2577777766554433211
Q ss_pred C---ccccCCcccccC-cceeeeeecCCCCEEEEEEEEC-------CeEEEEEEECCCCceE-eeccCCcceEEe--eee
Q 004816 341 D---AEFSRPLWVFGI-NSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLG 406 (729)
Q Consensus 341 ~---~~~~~~~w~~~~-~~~~~l~~~~~~~~l~~~s~~~-------g~~~ly~~d~~~g~~~-~lt~~~~~v~~~--~~~ 406 (729)
. .......|.+.. ..+.+.+ +++++|+..... +...|.++|+++.++. .|..+.. ...+ +.+
T Consensus 305 ~~~~~~~i~~g~~p~g~~~va~s~---dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~-P~gia~spD 380 (426)
T 3c75_H 305 EALTEAERADDWRPGGWQQTAYHR---QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE-IDSINVSQD 380 (426)
T ss_dssp ESSCTTTGGGTEEECSSSCEEEEG---GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-ECEEEECCS
T ss_pred eeccccccccccccCCceeeEEcC---CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC-cCeEEEccC
Confidence 0 000012233321 2345544 677888776432 3568999999988753 4433321 2222 455
Q ss_pred CCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 407 NDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 407 ~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
++..+|..... ...+..+|+++++.
T Consensus 381 g~~~lyv~n~~--s~~VsVID~~t~kv 405 (426)
T 3c75_H 381 AEPLLYALSAG--TQTLHIYDAATGEE 405 (426)
T ss_dssp SSCEEEEEETT--TTEEEEEETTTCCE
T ss_pred CCEEEEEEcCC--CCeEEEEECCCCCE
Confidence 55355555422 35799999988875
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.3e-08 Score=101.44 Aligned_cols=216 Identities=9% Similarity=0.036 Sum_probs=117.2
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCe---ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN- 232 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~- 232 (729)
++++...++.|.+|++.+ +..+ .+... ...+..++|+|||++|+....+ ..|.++|+.+++
T Consensus 25 ~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~s~d---------~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 25 EFVTTTATNQVELYEQDG--NGWKHARTFSDH----DKIVTCVDWAPKSNRIVTCSQD---------RNAYVYEKRPDGT 89 (377)
T ss_dssp EEECCCSSSCBCEEEEET--TEEEECCCBCCC----SSCEEEEEECTTTCCEEEEETT---------SSEEEC------C
T ss_pred EEEEecCCCEEEEEEccC--CceEEEEEEecC----CceEEEEEEeCCCCEEEEEeCC---------CeEEEEEcCCCCc
Confidence 344444677888888876 5212 23322 3557888999999987766543 358888888776
Q ss_pred ---eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe-eeeEEecC-CCCCccccccCceeCC
Q 004816 233 ---IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAG-FDPTIVESPTEPKWSS 307 (729)
Q Consensus 233 ---~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~-~~~~~~~~-~~~~~~~~~~~~~wsp 307 (729)
...+..........+|+|||+.|+..+.+ ..|.++|+. +++. .....+.. .. ..+..+.|+|
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~-~~~~~~~~~~~~~~h~----~~v~~~~~~~ 156 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA--------RVISVCYFE-QENDWWVSKHLKRPLR----STILSLDWHP 156 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESS--------SCEEECCC------CCCCEEECSSCC----SCEEEEEECT
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecC--------CeEEEEEEC-CcccceeeeEeecccC----CCeEEEEEcC
Confidence 33444455567788999999999877632 348888887 4431 11334444 44 5667889999
Q ss_pred CCcEEEEEecCCCceEEEEEEcCCCe---------------EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEE
Q 004816 308 KGELFFVTDRKNGFWNLHKWIESNNE---------------VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 372 (729)
Q Consensus 308 DG~l~~~~~~~~g~~~l~~~d~~~g~---------------~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s 372 (729)
||++++.... .+.-.+ +|+..++ ...+...- ....+ ...+.|.+ +++ ++++.
T Consensus 157 ~~~~l~~~~~-d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----v~~~~~sp---~~~-~l~~~ 223 (377)
T 3dwl_C 157 NNVLLAAGCA-DRKAYV--LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW-----VHAVGFSP---SGN-ALAYA 223 (377)
T ss_dssp TSSEEEEEES-SSCEEE--EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS-----EEEEEECT---TSS-CEEEE
T ss_pred CCCEEEEEeC-CCEEEE--EEEEecccCCCccccccccccchhhhhhcc-cCCce-----EEEEEECC---CCC-EEEEE
Confidence 9994444444 354444 4543221 01111000 00011 12344442 554 45556
Q ss_pred EECCeEEEEEEECCCCc-----eEeeccCCcceEEe-eeeCCEEEEEEe
Q 004816 373 RQNGRSYLGILDDFGHS-----LSLLDIPFTDIDNI-TLGNDCLFVEGA 415 (729)
Q Consensus 373 ~~~g~~~ly~~d~~~g~-----~~~lt~~~~~v~~~-~~~~~~~~~~~~ 415 (729)
..+|...||-+ .+++ ...+......+..+ ..+++.+++.++
T Consensus 224 ~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 224 GHDSSVTIAYP--SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY 270 (377)
T ss_dssp ETTTEEC-CEE--CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred eCCCcEEEEEC--CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence 66787666655 4444 34444555567777 555666665553
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-08 Score=102.20 Aligned_cols=101 Identities=14% Similarity=-0.002 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCCCCCCc---cccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC
Q 004816 490 EKPPLLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG 566 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~---~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 566 (729)
+..|.||++||..+... ...|....+.|.++||.|+.+|++|.+. .. ...+++.+.++.+++.
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g~g~---s~----------~~~~~~~~~i~~~~~~- 70 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDT---SE----------VRGEQLLQQVEEIVAL- 70 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSSC---HH----------HHHHHHHHHHHHHHHH-
T ss_pred CCCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCCCCC---ch----------hhHHHHHHHHHHHHHH-
Confidence 34577999999755432 3467778889999999999999996543 21 1123444444444333
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 567 KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 567 ~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
.+.+++.++|||+||.++..++. +|++++++|++++..
T Consensus 71 -~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 -SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp -HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred -hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 13468999999999999999988 899999999998854
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.75 E-value=9.5e-07 Score=92.38 Aligned_cols=160 Identities=11% Similarity=0.012 Sum_probs=97.0
Q ss_pred CccCceEEcC----CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCc--eEEEEC---CEEEE
Q 004816 89 KRLGGTAVDG----HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG--AFRIFG---DTVIF 159 (729)
Q Consensus 89 ~~~~~~~~~p----g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~---~~i~~ 159 (729)
..+..+.|+| ++..++... ..++..+|....+ +..+.+... ....+..... .|+++. +.+++
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~---~~~~v~vw~~~~~--~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATV---GSNRVTLYECHSQ--GEIRLLQSY----VDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEE---ETTEEEEEEECGG--GCEEEEEEE----ECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CceEEEEEecccCCCCceEEEEC---CCCEEEEEEcCCC--cEEEeeeec----cccCCCCcEEEEEeccCCCCCCCEEE
Confidence 3567888887 344444443 2346677776533 121222100 0000111122 344442 35677
Q ss_pred EECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecC-CCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee
Q 004816 160 SNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV 237 (729)
Q Consensus 160 ~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SP-dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt 237 (729)
+...++.|.+|++.+ ++. ..+... ...+...+|+| +++.|+....+ ..|+++|+.+++.....
T Consensus 90 ~~~~dg~i~v~d~~~--~~~~~~~~~~----~~~i~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~ 154 (366)
T 3k26_A 90 VAGSRGIIRIINPIT--MQCIKHYVGH----GNAINELKFHPRDPNLLLSVSKD---------HALRLWNIQTDTLVAIF 154 (366)
T ss_dssp EEETTCEEEEECTTT--CCEEEEEESC----CSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTTTEEEEEE
T ss_pred EecCCCEEEEEEchh--ceEeeeecCC----CCcEEEEEECCCCCCEEEEEeCC---------CeEEEEEeecCeEEEEe
Confidence 777788999999987 543 334333 35578889999 88877665543 46899999988765543
Q ss_pred ----eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCC
Q 004816 238 ----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG 281 (729)
Q Consensus 238 ----~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g 281 (729)
..........|+|||+.|+.... ...|.++|+. ++
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~i~d~~-~~ 193 (366)
T 3k26_A 155 GGVEGHRDEVLSADYDLLGEKIMSCGM--------DHSLKLWRIN-SK 193 (366)
T ss_dssp CSTTSCSSCEEEEEECTTSSEEEEEET--------TSCEEEEESC-SH
T ss_pred cccccccCceeEEEECCCCCEEEEecC--------CCCEEEEECC-CC
Confidence 33456678899999998886662 2348888887 44
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.75 E-value=7.9e-07 Score=96.05 Aligned_cols=250 Identities=10% Similarity=0.096 Sum_probs=143.6
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcc--cccccccCCceEEEECC--EEEEEEC
Q 004816 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAV--RTTAQEYGGGAFRIFGD--TVIFSNY 162 (729)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~--~i~~~~~ 162 (729)
...+..++|+| ++.++.+.. .+|...+|....... .. .. ...... .-..+...+.++.++.+ .++++..
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~---~dg~V~vwd~~~~~~-~~-~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKT---PSSDVLVFDYTKHPS-KP-EP-SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEEC---SSSCEEEEEGGGSCS-SC-CT-TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred CCcEEEEEECCCCCcEEEEEC---CCCcEEEEECCCccc-cc-Cc-cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 45677899998 566666654 457778887754200 00 00 000000 00112223445555533 3677777
Q ss_pred CCCcEEEEeCCCCCCC-------CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc---
Q 004816 163 KDQRLYKHSIDSKDSS-------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--- 232 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~-------~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--- 232 (729)
.++.|.+|++..+ +. ...+... ...+.+.+|+|++..++++.... ..|+++|+.++.
T Consensus 202 ~dg~i~vwd~~~~-~~~~~~~~~~~~~~~h----~~~v~~v~~~p~~~~~l~s~~~d--------g~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 202 DDHTICLWDINAT-PKEHRVIDAKNIFTGH----TAVVEDVAWHLLHESLFGSVADD--------QKLMIWDTRNNNTSK 268 (430)
T ss_dssp TTSCEEEEETTSC-CBGGGEEECSEEECCC----SSCEEEEEECSSCTTEEEEEETT--------SEEEEEETTCSCSSS
T ss_pred CCCeEEEEeCCCC-CCCCceeccceeecCC----CCCEeeeEEeCCCCCEEEEEeCC--------CeEEEEECCCCCCCc
Confidence 7889999999761 11 1222222 34567889999555555554433 579999998762
Q ss_pred -eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-
Q 004816 233 -IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 310 (729)
Q Consensus 233 -~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~- 310 (729)
...+..........+|+|+|+.++++... ...|.++|+. ... ..+..+.... ..+..+.|+|+|+
T Consensus 269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~-------dg~v~vwd~~-~~~-~~~~~~~~h~----~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSA-------DKTVALWDLR-NLK-LKLHSFESHK----DEIFQVQWSPHNET 335 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSCTTEEEEEET-------TSEEEEEETT-CTT-SCSEEEECCS----SCEEEEEECSSCTT
T ss_pred ceeEeecCCCCeEEEEeCCCCCCEEEEEeC-------CCeEEEEeCC-CCC-CCeEEeecCC----CCEEEEEECCCCCC
Confidence 33443444566788999999976655532 3459999987 432 1244455454 5677899999998
Q ss_pred EEEEEecCCCceEEEEEEcCCCe------------EEEee---ccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC
Q 004816 311 LFFVTDRKNGFWNLHKWIESNNE------------VLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 375 (729)
Q Consensus 311 l~~~~~~~~g~~~l~~~d~~~g~------------~~~l~---~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~ 375 (729)
+++.... .+.-.| +|+.... ...+. .....+. .+.|.+ ++..++++...+
T Consensus 336 ~l~s~~~-d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~p---~~~~~l~s~s~d 400 (430)
T 2xyi_A 336 ILASSGT-DRRLHV--WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS---------DFSWNP---NEPWIICSVSED 400 (430)
T ss_dssp EEEEEET-TSCCEE--EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE---------EEEECS---SSTTEEEEEETT
T ss_pred EEEEEeC-CCcEEE--EeCCCCccccCccccccCCcceEEEcCCCCCCce---------EEEECC---CCCCEEEEEECC
Confidence 7766655 454444 4554411 01111 1111222 334443 555577777788
Q ss_pred CeEEEEEEE
Q 004816 376 GRSYLGILD 384 (729)
Q Consensus 376 g~~~ly~~d 384 (729)
|..+||.++
T Consensus 401 g~i~iw~~~ 409 (430)
T 2xyi_A 401 NIMQVWQMA 409 (430)
T ss_dssp SEEEEEEEC
T ss_pred CCEEEeEcc
Confidence 888888764
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-08 Score=102.49 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCCCCcc----ccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC
Q 004816 490 EKPPLLVKSHGGPTSEAR----GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 565 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~----~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 565 (729)
+..|.||++||..+.... ..|....+.|.++||.|+++|++|.+..... ....+++.+.++.+++.
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g~g~s~~~----------~~~~~~l~~~i~~~l~~ 75 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGP----------NGRGEQLLAYVKTVLAA 75 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCSSCCSSST----------TSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCC----------CCCHHHHHHHHHHHHHH
Confidence 345779999997544321 4567788999999999999999976543211 11234455555544443
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 566 GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 566 ~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
.+.+++.|+|||+||.++..++. +|++++++|++++..
T Consensus 76 --~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 76 --TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp --HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 23468999999999999999988 899999999998854
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.75 E-value=5.7e-07 Score=101.64 Aligned_cols=202 Identities=9% Similarity=0.071 Sum_probs=126.9
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC----ce-EEeeeCCCe-eeeeeeCC--CCCeEEEEEecC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ----NI-QVLVSGSDF-YAFPRMDP--RGERMAWIEWHH 262 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g----~~-~~lt~~~~~-~~~~~~SP--DG~~la~~~~~~ 262 (729)
..+...+|||||++|++..+ ..|.+++++++ +. ..+...... ....+||| ||++|+..+.
T Consensus 19 ~~v~~~~~spdg~~l~~~~~----------~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~-- 86 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCG----------KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE-- 86 (615)
T ss_dssp TCCCCCEEETTTTEEEEEET----------TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET--
T ss_pred CceeEEEECCCCCEEEEecC----------CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecC--
Confidence 34577899999999888763 35888899877 44 455545556 78899999 9999887662
Q ss_pred CCCCCCCcEEEEEEecCCC------CeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 263 PNMPWDKAELWVGYISENG------DVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 263 ~~~~~~~~~l~~~d~~~~g------~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
...|.++|+. ++ +......+.... ..+..+.|+|||+ ++...........|+.+| .+....
T Consensus 87 ------dg~v~vw~~~-~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~ 154 (615)
T 1pgu_A 87 ------SGKVIVWGWT-FDKESNSVEVNVKSEFQVLA----GPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLG 154 (615)
T ss_dssp ------TSEEEEEEEE-EEGGGTEEEEEEEEEEECCS----SCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEE
T ss_pred ------CCEEEEEeCC-CCcccccccccccchhhccc----ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcce
Confidence 3458888886 44 222233444444 5677889999999 665554423346788877 233333
Q ss_pred EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eeccCCc---ceEEe-eeeC-CE
Q 004816 336 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFT---DIDNI-TLGN-DC 409 (729)
Q Consensus 336 ~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt~~~~---~v~~~-~~~~-~~ 409 (729)
.+......+.. +.|.+ +++.++++...++...+| +..+++.. .+..... .+..+ ..++ +.
T Consensus 155 ~~~~~~~~v~~---------~~~~~---~~~~~l~~~~~d~~v~vw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (615)
T 1pgu_A 155 EVSGHSQRINA---------CHLKQ---SRPMRSMTVGDDGSVVFY--QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE 220 (615)
T ss_dssp ECCSCSSCEEE---------EEECS---SSSCEEEEEETTTEEEEE--ETTTBEEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred eeecCCccEEE---------EEECC---CCCcEEEEEeCCCcEEEE--eCCCcceeeeecccCCCCceEEEEEECCCCCC
Confidence 33333322222 34443 555566777777766665 66665543 4444444 57776 4444 55
Q ss_pred EEEEEeCCCCCceEEEEEcCCCcc
Q 004816 410 LFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 410 ~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+++..+.. ..++++|+.+++.
T Consensus 221 ~l~~~~~d---g~i~vwd~~~~~~ 241 (615)
T 1pgu_A 221 FVITVGSD---RKISCFDGKSGEF 241 (615)
T ss_dssp EEEEEETT---CCEEEEETTTCCE
T ss_pred EEEEEeCC---CeEEEEECCCCCE
Confidence 66655543 3678888877763
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=113.73 Aligned_cols=117 Identities=19% Similarity=0.181 Sum_probs=79.8
Q ss_pred CCCCCEEEEEcCCCCCCccccc-hhhhHHHhh-CCcEEEEecCCC-CCCCch---hHHH-hhccCCCcccHHHHHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYGG-STGYGR---EFRE-RLLGRWGIVDVNDCCSCATF 561 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la~-~G~~v~~~d~rG-s~g~g~---~~~~-~~~~~~~~~~~~D~~~~~~~ 561 (729)
.++.|+||++|||++....... ......|++ .|+.|+.+|||- .-|+.. .+.. ......+...+.|+..+++|
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al~w 217 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW 217 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHHHH
Confidence 4568999999998754333321 122355665 699999999993 222211 0000 00111223348999999999
Q ss_pred HHhCC---CCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEEecccc
Q 004816 562 LVGSG---KADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA 605 (729)
Q Consensus 562 l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~~---~~~~~a~v~~~~~~ 605 (729)
+.++- ..|+++|.|+|+|+||+++..++.. ..+|+++|+.+|..
T Consensus 218 v~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 218 LKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 98862 4689999999999999999877763 46899999998854
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.74 E-value=6e-07 Score=93.88 Aligned_cols=203 Identities=10% Similarity=0.109 Sum_probs=128.6
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
..+.++.|++ ++.+||++.. .+ .|++.+.+++ ..+.+...+ +....+.++.+.++.|+|.+...+.|
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~---~~--~I~r~~~~g~-~~~~~~~~~------~~~p~glavd~~~g~ly~~d~~~~~I 140 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVT---LD--RILRANLNGS-NVEEVVSTG------LESPGGLAVDWVHDKLYWTDSGTSRI 140 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TT--EEEEEETTSC-SCEEEECSS------CSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEEeccccEEEEEecc---CC--ceEEEecCCC-CceEEEeCC------CCCccEEEEecCCCeEEEEcCCCCeE
Confidence 4577899998 9999999863 23 4777776632 333333222 11122333444467899998878899
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFP 246 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~ 246 (729)
+++++++ ...+.+.... .....+.+++|++..|+++.... ...|+++++++...+.+.. +...-.+.
T Consensus 141 ~~~~~dG--~~~~~l~~~~---l~~P~~iavdp~~g~ly~td~~~-------~~~I~r~~~dG~~~~~~~~~~~~~PnGl 208 (349)
T 3v64_C 141 EVANLDG--AHRKVLLWQS---LEKPRAIALHPMEGTIYWTDWGN-------TPRIEASSMDGSGRRIIADTHLFWPNGL 208 (349)
T ss_dssp EEEETTS--CSCEEEECTT---CSCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCSCEESCCSSCSCEEEE
T ss_pred EEEcCCC--CceEEEEeCC---CCCcceEEEecCcCeEEEeccCC-------CCEEEEEeCCCCCcEEEEECCCCCcceE
Confidence 9999986 5555554321 23347788999988877775432 2579999999876666643 44456788
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~ 326 (729)
+|+|++++|+|+... ...|++++++ +... ..+..... .....++. .++.+|++ +. +...|.+
T Consensus 209 a~d~~~~~lY~aD~~-------~~~I~~~~~d-G~~~--~~~~~~~~----~~P~giav-~~~~ly~t-d~--~~~~V~~ 270 (349)
T 3v64_C 209 TIDYAGRRMYWVDAK-------HHVIERANLD-GSHR--KAVISQGL----PHPFAITV-FEDSLYWT-DW--HTKSINS 270 (349)
T ss_dssp EEETTTTEEEEEETT-------TTEEEEEETT-SCSC--EEEECSSC----SSEEEEEE-ETTEEEEE-ET--TTTEEEE
T ss_pred EEeCCCCEEEEEECC-------CCEEEEEeCC-CCce--EEEEeCCC----CCceEEEE-ECCEEEEe-cC--CCCeEEE
Confidence 999999999988732 3569999987 3322 22332222 33345555 23335554 43 4467888
Q ss_pred EEcCCCe
Q 004816 327 WIESNNE 333 (729)
Q Consensus 327 ~d~~~g~ 333 (729)
++..+|+
T Consensus 271 ~~~~~G~ 277 (349)
T 3v64_C 271 ANKFTGK 277 (349)
T ss_dssp EETTTCC
T ss_pred EEccCCC
Confidence 8854544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.73 E-value=3.6e-07 Score=94.13 Aligned_cols=204 Identities=11% Similarity=0.112 Sum_probs=127.8
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.+.++.|++ ++.+||++... + .|++.+.+++.....++... +....+.++.+.++.|++.+...+.|+
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~---~--~I~r~~~~g~~~~~~~~~~~------l~~p~glavd~~~g~ly~~d~~~~~I~ 104 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSE---E--AIKRTEFNKTESVQNVVVSG------LLSPDGLACDWLGEKLYWTDSETNRIE 104 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTT---T--EEEEEETTSSSCCCEEEEEC------CSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred ccEEEEEEeCCCEEEEEECCC---C--cEEEEEccCCCceEEEEcCC------CCCccEEEEEcCCCeEEEEECCCCEEE
Confidence 455788999 89999998632 3 47777666221112222111 112223344444778999988788999
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-eCCCeeeeee
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-SGSDFYAFPR 247 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~~~~~~~~~~ 247 (729)
++++++ ...+.+.... .....+.+++|++.+|+++.... ...|+++++++...+.+. .+...-++.+
T Consensus 105 ~~~~dG--~~~~~l~~~~---~~~P~giavdp~~g~ly~td~~~-------~~~I~r~~~dG~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 105 VSNLDG--SLRKVLFWQE---LDQPRAIALDPSSGFMYWTDWGE-------VPKIERAGMDGSSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp EEETTS--CSCEEEECSS---CSSEEEEEEEGGGTEEEEEECSS-------SCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEECCC--CcEEEEEeCC---CCCccEEEEeCCCCEEEEEecCC-------CCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence 999986 5555554321 23347788999888877764321 257999999976666654 3444567889
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEE
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKW 327 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~ 327 (729)
|+|++++|+|+.. ....|++++++ +... ..+..+.. .....++... +.+||+ +. +...|+++
T Consensus 173 vd~~~~~lY~aD~-------~~~~I~~~d~d-G~~~--~~~~~~~~----~~P~glav~~-~~lywt-d~--~~~~V~~~ 234 (318)
T 3sov_A 173 LDYEEQKLYWADA-------KLNFIHKSNLD-GTNR--QAVVKGSL----PHPFALTLFE-DILYWT-DW--STHSILAC 234 (318)
T ss_dssp EETTTTEEEEEET-------TTTEEEEEETT-SCSC--EEEECSCC----SCEEEEEEET-TEEEEE-ET--TTTEEEEE
T ss_pred EeccCCEEEEEEC-------CCCEEEEEcCC-CCce--EEEecCCC----CCceEEEEeC-CEEEEE-ec--CCCeEEEE
Confidence 9999999999873 23569999987 3332 22333221 2333444432 236666 44 45689999
Q ss_pred EcCCCeE
Q 004816 328 IESNNEV 334 (729)
Q Consensus 328 d~~~g~~ 334 (729)
+..+|+.
T Consensus 235 ~~~~G~~ 241 (318)
T 3sov_A 235 NKYTGEG 241 (318)
T ss_dssp ETTTCCS
T ss_pred ECCCCCc
Confidence 9866653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-06 Score=90.66 Aligned_cols=229 Identities=14% Similarity=0.077 Sum_probs=143.0
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.++|.. ...|+++++++ +....+... ......+.|+++++.|+++... ...|++++++++..+.
T Consensus 89 ~l~~~~--~~~I~~i~~~~--~~~~~~~~~----~~~~~gl~~d~~~~~ly~~D~~--------~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 89 VLLFAN--RIDIRQVLPHR--SEYTLLLNN----LENAIALDFHHRRELVFWSDVT--------LDRILRANLNGSNVEE 152 (386)
T ss_dssp EEEEEC--BSCEEEECTTS--CCCEEEECS----CSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCCEEE
T ss_pred eeEeec--CccceeeccCC--CcEEEEecC----CCccEEEEEecCCCeEEEEeCC--------CCcEEEEecCCCCcEE
Confidence 455553 35699999987 666665544 2345778899988887766432 2579999999887666
Q ss_pred eee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEE
Q 004816 236 LVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 313 (729)
Q Consensus 236 lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~ 313 (729)
+.. +.....+.++++.++.|+|+... ...|++++++ |... ..+....- .....++..|++. |||
T Consensus 153 ~~~~~~~~p~glavd~~~g~lY~~d~~-------~~~I~~~~~d--g~~~-~~l~~~~l----~~P~giavdp~~g~ly~ 218 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVHDKLYWTDSG-------TSRIEVANLD--GAHR-KVLLWQSL----EKPRAIALHPMEGTIYW 218 (386)
T ss_dssp EECSSCSCCCCEEEETTTTEEEEEETT-------TTEEEECBTT--SCSC-EEEECSSC----SCEEEEEEETTTTEEEE
T ss_pred EEeCCCCCccEEEEEeCCCeEEEEcCC-------CCeEEEEeCC--CCce-EEeecCCC----CCCcEEEEEcCCCeEEE
Confidence 543 33445678899988999988742 3468998876 3322 22333221 3345678888766 555
Q ss_pred EEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
+ +. .....|+++++++...+.+.... ..| .+.+.+.+ +++.|||+-. +...|++++++++..+.+
T Consensus 219 t-d~-~~~~~I~r~~~dG~~~~~~~~~~-----~~~---PnGlavd~---~~~~lY~aD~--~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 219 T-DW-GNTPRIEASSMDGSGRRIIADTH-----LFW---PNGLTIDY---AGRRMYWVDA--KHHVIERANLDGSHRKAV 283 (386)
T ss_dssp E-EC-SSSCEEEEEETTSCSCEEEECSS-----CSC---EEEEEEEG---GGTEEEEEET--TTTEEEEECTTSCSCEEE
T ss_pred e-cc-CCCCEEEEEeCCCCCcEEEEECC-----CCC---eeeEEEeC---CCCEEEEEEC--CCCEEEEEeCCCCeeEEE
Confidence 4 44 23478999999877666655321 111 12344433 5778888753 445799999988765554
Q ss_pred cc-CCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 394 DI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 394 t~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.. +......+..+++.+++... ....|++++..+|+
T Consensus 284 ~~~~~~~P~giav~~~~ly~td~---~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 284 ISQGLPHPFAITVFEDSLYWTDW---HTKSINSANKFTGK 320 (386)
T ss_dssp ECSSCSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred EECCCCCceEEEEECCEEEEeeC---CCCeEEEEECCCCc
Confidence 33 33334455446666665543 23468888854554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-07 Score=94.95 Aligned_cols=214 Identities=11% Similarity=0.066 Sum_probs=122.7
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
...++|+... .....+.|+|||+.|+++.... ..|++++.+ ++.+.+........+..++|||+ |+
T Consensus 35 ~~~~~l~~~~----~~~egp~~~~~g~~l~~~d~~~--------~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~-l~ 100 (305)
T 3dr2_A 35 ARLLTLYDQA----TWSEGPAWWEAQRTLVWSDLVG--------RRVLGWRED-GTVDVLLDATAFTNGNAVDAQQR-LV 100 (305)
T ss_dssp CCCEEEECCC----SSEEEEEEEGGGTEEEEEETTT--------TEEEEEETT-SCEEEEEESCSCEEEEEECTTSC-EE
T ss_pred CceEEEecCC----cCccCCeEeCCCCEEEEEECCC--------CEEEEEeCC-CCEEEEeCCCCccceeeECCCCC-EE
Confidence 5677777652 2336789999999988875432 579999984 66666666666677889999998 44
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEe----c----------CCCce
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD----R----------KNGFW 322 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~----~----------~~g~~ 322 (729)
.... ....|++++.+ |+............. ..+..+.+++||+++++-. . ..+..
T Consensus 101 v~~~-------~~~~v~~~~~~--g~~~~~~~~~~~~~~--~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 101 HCEH-------GRRAITRSDAD--GQAHLLVGRYAGKRL--NSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp EEET-------TTTEEEEECTT--SCEEEEECEETTEEC--SCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred EEEC-------CCCEEEEECCC--CCEEEEEeccCCCcc--CCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC
Confidence 4432 12458888864 544222111111000 2345789999999777421 0 01246
Q ss_pred EEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC---CeEEEEEEECCCCceE---eec-c
Q 004816 323 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN---GRSYLGILDDFGHSLS---LLD-I 395 (729)
Q Consensus 323 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~---g~~~ly~~d~~~g~~~---~lt-~ 395 (729)
.||++|+++++.+.+. ..... +.+.|.+ +++.+|+..... +...|++++++++.+. .+. .
T Consensus 170 ~v~~~d~~~g~~~~~~-~~~~p---------~gl~~sp---dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 236 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA-DLDHP---------NGLAFSP---DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV 236 (305)
T ss_dssp EEEEECSSSCCCEEEE-EESSE---------EEEEECT---TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC
T ss_pred eEEEEcCCCCcEEEEe-cCCCC---------cceEEcC---CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC
Confidence 7999999888877665 21111 1234433 677777765432 1356777777654321 111 1
Q ss_pred CCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 396 PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 396 ~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.......+ .+.++.++ .+. ...|++++.++...
T Consensus 237 ~~~~pdgi~~d~~G~lw-v~~----~~gv~~~~~~g~~~ 270 (305)
T 3dr2_A 237 PDGLPDGFCVDRGGWLW-SSS----GTGVCVFDSDGQLL 270 (305)
T ss_dssp SSSCCCSEEECTTSCEE-ECC----SSEEEEECTTSCEE
T ss_pred CCCCCCeEEECCCCCEE-Eec----CCcEEEECCCCCEE
Confidence 12222334 23344443 333 13588998765443
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.3e-08 Score=98.53 Aligned_cols=102 Identities=14% Similarity=0.057 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCCCCCccccch-hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~-~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
..+.||++||...+. ...|. .+...|.++||.|+.+|++|.+.... . ...+++.+.++.+.+.. .
T Consensus 64 ~~~pVVLvHG~~~~~-~~~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~~---~--------~~~~~la~~I~~l~~~~--g 129 (316)
T 3icv_A 64 VSKPILLVPGTGTTG-PQSFDSNWIPLSAQLGYTPCWISPPPFMLNDT---Q--------VNTEYMVNAITTLYAGS--G 129 (316)
T ss_dssp CSSEEEEECCTTCCH-HHHHTTTHHHHHHHTTCEEEEECCTTTTCSCH---H--------HHHHHHHHHHHHHHHHT--T
T ss_pred CCCeEEEECCCCCCc-HHHHHHHHHHHHHHCCCeEEEecCCCCCCCcH---H--------HHHHHHHHHHHHHHHHh--C
Confidence 346789999974332 13455 67888999999999999987532111 1 12466777888877763 3
Q ss_pred CCcEEEEEcChHHHHHHHHHh-C---CCcceEEEEeccccC
Q 004816 570 EKRLCITGGSAGGYTTLAALA-F---RDTFKAGASLYGVAD 606 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~---~~~~~a~v~~~~~~d 606 (729)
.+++.|+||||||.++..++. + +++++.+|++++...
T Consensus 130 ~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 130 NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred CCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 378999999999999977776 4 589999999988653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-06 Score=95.61 Aligned_cols=88 Identities=5% Similarity=-0.147 Sum_probs=58.4
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC--CCc
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN--GQN 232 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~--~g~ 232 (729)
.++.+...++.|+++|.++ ++.. .+..+ .....+.+||||++++.. ... ..|+++|+. +++
T Consensus 168 ~~~V~~~~~~~V~viD~~t--~~v~~~i~~g-----~~p~~v~~SpDGr~lyv~-~~d--------g~V~viD~~~~t~~ 231 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGST--YEIKTVLDTG-----YAVHISRLSASGRYLFVI-GRD--------GKVNMIDLWMKEPT 231 (567)
T ss_dssp EEEEEETTTTEEEEEETTT--CCEEEEEECS-----SCEEEEEECTTSCEEEEE-ETT--------SEEEEEETTSSSCC
T ss_pred eEEEEeCCCCeEEEEECCC--CeEEEEEeCC-----CCccceEECCCCCEEEEE-cCC--------CeEEEEECCCCCCc
Confidence 4555666677999999987 5433 44433 223467899999986544 322 469999995 554
Q ss_pred e-EEeeeCCCeeeeeeeC----CCCCeEEEEEe
Q 004816 233 I-QVLVSGSDFYAFPRMD----PRGERMAWIEW 260 (729)
Q Consensus 233 ~-~~lt~~~~~~~~~~~S----PDG~~la~~~~ 260 (729)
. ..+..+. .-.+..+| |||++++....
T Consensus 232 ~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~ 263 (567)
T 1qks_A 232 TVAEIKIGS-EARSIETSKMEGWEDKYAIAGAY 263 (567)
T ss_dssp EEEEEECCS-EEEEEEECCSTTCTTTEEEEEEE
T ss_pred EeEEEecCC-CCceeEEccccCCCCCEEEEEEc
Confidence 4 3443333 34567899 79999887663
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.7e-06 Score=87.81 Aligned_cols=229 Identities=14% Similarity=0.082 Sum_probs=141.7
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.++|.. ...|+.+++++ .....+... ......+.|+++++.|+++... ...|++++++++..+.
T Consensus 46 ~ll~~~--~~~I~~i~~~g--~~~~~~~~~----~~~~~~l~~d~~~~~ly~~D~~--------~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 46 VLLFAN--RIDIRQVLPHR--SEYTLLLNN----LENAIALDFHHRRELVFWSDVT--------LDRILRANLNGSNVEE 109 (349)
T ss_dssp EEEEEC--BSCEEEECTTS--CCEEEEECS----CSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCSCEE
T ss_pred eeEeec--ccceEEEeCCC--CeeEEeecC----CCceEEEEEeccccEEEEEecc--------CCceEEEecCCCCceE
Confidence 456663 34699999987 655555443 2334677899988887776432 2579999999887666
Q ss_pred eee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEE
Q 004816 236 LVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 313 (729)
Q Consensus 236 lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~ 313 (729)
+.. +.....+.++.++++.|+|+... ...|++++++ |... ..+....- .....++..|++. |||
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~-------~~~I~~~~~d--G~~~-~~l~~~~l----~~P~~iavdp~~g~ly~ 175 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSG-------TSRIEVANLD--GAHR-KVLLWQSL----EKPRAIALHPMEGTIYW 175 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETT--SCSC-EEEECTTC----SCEEEEEEETTTTEEEE
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCC-------CCeEEEEcCC--CCce-EEEEeCCC----CCcceEEEecCcCeEEE
Confidence 543 33445678899988999988742 3469999987 3322 22333221 3445678888766 555
Q ss_pred EEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
+ +. .....|+++++++...+.+.... . .| .+.+.+.+ +++.|||+-. +...|++++++++..+.+
T Consensus 176 t-d~-~~~~~I~r~~~dG~~~~~~~~~~--~---~~---PnGla~d~---~~~~lY~aD~--~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 176 T-DW-GNTPRIEASSMDGSGRRIIADTH--L---FW---PNGLTIDY---AGRRMYWVDA--KHHVIERANLDGSHRKAV 240 (349)
T ss_dssp E-EC-SSSCEEEEEETTSCSCEESCCSS--C---SC---EEEEEEET---TTTEEEEEET--TTTEEEEEETTSCSCEEE
T ss_pred e-cc-CCCCEEEEEeCCCCCcEEEEECC--C---CC---cceEEEeC---CCCEEEEEEC--CCCEEEEEeCCCCceEEE
Confidence 5 44 23478999999876666554321 1 11 12344433 5778888753 445899999988765554
Q ss_pred c-cCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 394 D-IPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 394 t-~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
. .+......+..+++.+++.... ...|++++..+|+
T Consensus 241 ~~~~~~~P~giav~~~~ly~td~~---~~~V~~~~~~~G~ 277 (349)
T 3v64_C 241 ISQGLPHPFAITVFEDSLYWTDWH---TKSINSANKFTGK 277 (349)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETT---TTEEEEEETTTCC
T ss_pred EeCCCCCceEEEEECCEEEEecCC---CCeEEEEEccCCC
Confidence 3 3333334454456666555432 2467777754443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=117.50 Aligned_cols=278 Identities=10% Similarity=0.022 Sum_probs=153.2
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l 167 (729)
.+..+.++| ++.++.-. .+|...+|....+ +....... +........++++ ..+++...++.|
T Consensus 963 ~i~~~~~sp~g~~l~~g~----~~g~i~i~d~~~~---~~~~~~~~--------h~~~v~~l~~s~dg~~l~s~~~dg~i 1027 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGD----EDGAIKIIELPNN---RVFSSGVG--------HKKAVRHIQFTADGKTLISSSEDSVI 1027 (1249)
T ss_dssp CEEEEEECTTSSEEEEEE----TTSCCEEEETTTT---SCEEECCC--------CSSCCCCEEECSSSSCEEEECSSSBE
T ss_pred cEEEEEEcCCCCEEEEEc----CCCCEEEEEcCCC---ceeeeccc--------CCCceEEEEECCCCCEEEEEcCCCEE
Confidence 356778888 66555433 3566677765433 22222111 1122333444433 345556678899
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYAFP 246 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~ 246 (729)
.+|++.+ ++...+... ...+....|+|++..+ ....+ ..|.++|+.+++.. .+..........
T Consensus 1028 ~vwd~~~--~~~~~~~~~----~~~v~~~~~~~~~~l~-~~~~d---------g~v~vwd~~~~~~~~~~~~~~~~v~~~ 1091 (1249)
T 3sfz_A 1028 QVWNWQT--GDYVFLQAH----QETVKDFRLLQDSRLL-SWSFD---------GTVKVWNVITGRIERDFTCHQGTVLSC 1091 (1249)
T ss_dssp EEEETTT--TEEECCBCC----SSCEEEEEECSSSEEE-EEESS---------SEEEEEETTTTCCCEEEECCSSCCCCE
T ss_pred EEEECCC--CceEEEecC----CCcEEEEEEcCCCcEE-EEECC---------CcEEEEECCCCceeEEEcccCCcEEEE
Confidence 9999987 655555443 3556788899988743 33322 46999999988754 444445567788
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~ 326 (729)
+|||||+.|+..+.+ ..|.++|+. +++. ...+.+.. ..+..++|+|||+++++... .|. |.+
T Consensus 1092 ~~s~d~~~l~s~s~d--------~~v~iwd~~-~~~~--~~~l~~h~----~~v~~~~~s~dg~~lat~~~-dg~--i~v 1153 (1249)
T 3sfz_A 1092 AISSDATKFSSTSAD--------KTAKIWSFD-LLSP--LHELKGHN----GCVRCSAFSLDGILLATGDD-NGE--IRI 1153 (1249)
T ss_dssp EECSSSSSCEEECCS--------SCCCEECSS-SSSC--SBCCCCCS----SCEEEEEECSSSSEEEEEET-TSC--CCE
T ss_pred EECCCCCEEEEEcCC--------CcEEEEECC-Ccce--eeeeccCC----CcEEEEEECCCCCEEEEEeC-CCE--EEE
Confidence 999999998876532 337788887 5653 33344444 55677899999995555544 354 555
Q ss_pred EEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eeccCCcceEEe-
Q 004816 327 WIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI- 403 (729)
Q Consensus 327 ~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt~~~~~v~~~- 403 (729)
+|..+++..... +................+.|.+ +++.++.. +| .|.++++.+++.. .+......+..+
T Consensus 1154 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~---dg~~l~s~---~g--~v~vwd~~~g~~~~~~~~~~~~i~~~~ 1225 (1249)
T 3sfz_A 1154 WNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP---DSKTLVSA---GG--YLKWWNVATGDSSQTFYTNGTNLKKIH 1225 (1249)
T ss_dssp EESSSSCCCCCCCCCC-------CCSCCCEEEECT---TSSCEEEE---SS--SEEEBCSSSCBCCCCCCCSSCCCCCCE
T ss_pred EECCCCceEEEeccccccccccccCceEEEEEECC---CCCEEEEC---CC--eEEEEECCCCceeeeeeccCCcccEEE
Confidence 677776543221 0000000000011123445553 66655533 25 4555577676643 333334445555
Q ss_pred eeeCCEEEEEEeCCCCCceEEEEE
Q 004816 404 TLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
..+++..+++.+.. +.++.++
T Consensus 1226 ~s~dg~~l~~~~~d---g~v~vw~ 1246 (1249)
T 3sfz_A 1226 VSPDFRTYVTVDNL---GILYILQ 1246 (1249)
T ss_dssp ECSSSCCEEEECTT---CCEEEEC
T ss_pred ECCCCCEEEEecCC---cEEEEEe
Confidence 34444444444332 2455444
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-06 Score=91.95 Aligned_cols=229 Identities=7% Similarity=-0.010 Sum_probs=130.1
Q ss_pred EEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCC--CCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPd--G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
.+++...++.|.+|++.++.+. ...+... ...+...+|+|+ |+.|+....+ ..|.++|+.+++.
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~ 91 (379)
T 3jrp_A 25 RLATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GKVLIWKEENGRW 91 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SCEEEEEEETTEE
T ss_pred EEEEEECCCcEEEEecCCCcceeeeEecCC----CCcEEEEEeCCCCCCCEEEEeccC---------CEEEEEEcCCCce
Confidence 4455556788999998741022 2233333 345678899988 8877666543 3588889888753
Q ss_pred E---EeeeCCCeeeeeeeCCC--CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC-
Q 004816 234 Q---VLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS- 307 (729)
Q Consensus 234 ~---~lt~~~~~~~~~~~SPD--G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp- 307 (729)
. .+..........+|+|+ |+.|+... ....|.++|+. ++.......+.... ..+..+.|+|
T Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~d~~i~v~d~~-~~~~~~~~~~~~~~----~~v~~~~~~~~ 158 (379)
T 3jrp_A 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--------SDGKVSVVEFK-ENGTTSPIIIDAHA----IGVNSASWAPA 158 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEE--------TTSEEEEEECC-TTSCCCEEEEECCT----TCEEEEEECCC
T ss_pred eEeeeecCCCcceEEEEeCCCCCCCEEEEec--------CCCcEEEEecC-CCCceeeEEecCCC----CceEEEEEcCc
Confidence 2 23334456778899999 99888776 23459999998 55332233444444 5667889999
Q ss_pred ------------CCcEEEEEecCCCceEEEEEEcCCCe--EEEe---eccCccccCCcccccCcceeeeeecCCC--CEE
Q 004816 308 ------------KGELFFVTDRKNGFWNLHKWIESNNE--VLAI---YSLDAEFSRPLWVFGINSYEIIQSHGEK--NLI 368 (729)
Q Consensus 308 ------------DG~l~~~~~~~~g~~~l~~~d~~~g~--~~~l---~~~~~~~~~~~w~~~~~~~~~l~~~~~~--~~l 368 (729)
|+++++.... .+. |.++|+.+++ ...+ ......+....|++ ++ +.+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp------------~~~~~~~ 223 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGA-DNL--VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP------------TVLLRSY 223 (379)
T ss_dssp C----------CTTCEEEEEET-TSC--EEEEEEETTTTEEEEEEEECCCSSCEEEEEECC------------CCSSSEE
T ss_pred cccccccccCCCCCCEEEEEeC-CCe--EEEEEecCCCcceeeEEEEecccCcEeEEEECC------------CCCCCCe
Confidence 6775545444 454 4455554442 1222 12222233333433 43 567
Q ss_pred EEEEEECCeEEEEEEECCCCc-eEee-cc--CCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 369 ACSYRQNGRSYLGILDDFGHS-LSLL-DI--PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 369 ~~~s~~~g~~~ly~~d~~~g~-~~~l-t~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
+++...+|...||-++..... ...+ .. ....+..+ ..+++.+++.++. +. .++.+++.
T Consensus 224 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg--~i~iw~~~ 286 (379)
T 3jrp_A 224 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DN--KVTLWKEN 286 (379)
T ss_dssp EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-SS--SEEEEEEE
T ss_pred EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-CC--cEEEEeCC
Confidence 777778888777765432211 2222 22 33456666 4445555555554 32 34444444
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-06 Score=88.12 Aligned_cols=233 Identities=8% Similarity=0.024 Sum_probs=136.3
Q ss_pred eEEEECC-EEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 149 ~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
+..++.+ ..+++...++.|.+||..+ +.. ..+... ...+...+|+|||+.|+....+ ..+.++
T Consensus 69 ~~~~s~d~~~l~s~s~Dg~v~vWd~~~--~~~~~~~~~~----~~~v~~~~~sp~g~~lasg~~d---------~~i~v~ 133 (354)
T 2pbi_B 69 CMDWCKDKRRIVSSSQDGKVIVWDSFT--TNKEHAVTMP----CTWVMACAYAPSGCAIACGGLD---------NKCSVY 133 (354)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECS----SSCCCEEEECTTSSEEEEESTT---------SEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCC--CCcceEEecC----CCCEEEEEECCCCCEEEEeeCC---------CCEEEE
Confidence 3444433 4567777888999999876 432 333332 2345778899999987765433 345566
Q ss_pred EcCCC-------ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 227 ALNGQ-------NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 227 dl~~g-------~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
++... ....+...........|+||+++|+..+. ...|.++|+. +++. ...+.+.. ..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~--------D~~v~lwd~~-~~~~--~~~~~~h~----~~ 198 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG--------DGTCALWDVE-SGQL--LQSFHGHG----AD 198 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET--------TSEEEEEETT-TCCE--EEEEECCS----SC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC--------CCcEEEEeCC-CCeE--EEEEcCCC----CC
Confidence 65432 22344444556677899999999886662 3458999998 6765 44555554 44
Q ss_pred ccCceeCC--CCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 300 PTEPKWSS--KGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 300 ~~~~~wsp--DG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
+....|+| +|++++.... .+ .|.++|+.+++..... .....+.. +.|.| +++ ++++...++
T Consensus 199 v~~~~~~~~~~g~~l~sgs~-Dg--~v~~wd~~~~~~~~~~~~h~~~v~~---------v~~~p---~~~-~l~s~s~D~ 262 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGC-DK--KAMVWDMRSGQCVQAFETHESDVNS---------VRYYP---SGD-AFASGSDDA 262 (354)
T ss_dssp EEEEEECCCSSCCEEEEEET-TS--CEEEEETTTCCEEEEECCCSSCEEE---------EEECT---TSS-EEEEEETTS
T ss_pred eEEEEEEeCCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCCeEE---------EEEeC---CCC-EEEEEeCCC
Confidence 45566766 5665555544 34 4666788887654433 22222222 33432 444 555666778
Q ss_pred eEEEEEEECCCCceEe-eccC--CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 377 RSYLGILDDFGHSLSL-LDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 377 ~~~ly~~d~~~g~~~~-lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
..+|| |+..++... +... ...+..+ ...++.+++.++.. ..+.++|+..++
T Consensus 263 ~v~lw--d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d---~~i~vwd~~~~~ 317 (354)
T 2pbi_B 263 TCRLY--DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND---YTINVWDVLKGS 317 (354)
T ss_dssp CEEEE--ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT---SCEEEEETTTCS
T ss_pred eEEEE--ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC---CcEEEEECCCCc
Confidence 76666 665554332 2222 1234455 44455566655533 367777876665
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-07 Score=98.89 Aligned_cols=199 Identities=10% Similarity=-0.037 Sum_probs=111.2
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l 167 (729)
.+..+.|+| ++.++. .. .++...+|..... ..+.+..-. .+.....+..++++ ..+++...++.|
T Consensus 13 ~v~~~~~s~~g~~l~~-~~---~d~~i~iw~~~~~---~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~s~d~~v 79 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVT-TT---ATNQVELYEQDGN---GWKHARTFS------DHDKIVTCVDWAPKSNRIVTCSQDRNA 79 (377)
T ss_dssp CCSCCEECSSSSEEEC-CC---SSSCBCEEEEETT---EEEECCCBC------CCSSCEEEEEECTTTCCEEEEETTSSE
T ss_pred cEEEEEECCCCCEEEE-ec---CCCEEEEEEccCC---ceEEEEEEe------cCCceEEEEEEeCCCCEEEEEeCCCeE
Confidence 567899999 664443 21 3567778876432 111111100 01222334444433 445555567889
Q ss_pred EEEeCCCCCCC----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc----eEEeee-
Q 004816 168 YKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN----IQVLVS- 238 (729)
Q Consensus 168 ~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~----~~~lt~- 238 (729)
.+|++.+ +. ...+... ...+...+|+|||+.|+....+ ..|.++++.+++ .+.+..
T Consensus 80 ~vwd~~~--~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 80 YVYEKRP--DGTWKQTLVLLRL----NRAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp EEC--------CCCCEEECCCC----SSCEEEEECCTTSSCCEEEESS---------SCEEECCC-----CCCCEEECSS
T ss_pred EEEEcCC--CCceeeeeEeccc----CCceEEEEECCCCCEEEEEecC---------CeEEEEEECCcccceeeeEeecc
Confidence 9999987 44 2333333 3457888999999988776653 358888888775 455554
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe---------------e-eeEEecCCCCCccccccC
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV---------------Y-KRVCVAGFDPTIVESPTE 302 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~---------------~-~~~~~~~~~~~~~~~~~~ 302 (729)
........+|+|||+.|+..+.+ ..|.++|+. .++. . ....+ +.. ..+..
T Consensus 145 h~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~v~~ 210 (377)
T 3dwl_C 145 LRSTILSLDWHPNNVLLAAGCAD--------RKAYVLSAY-VRDVDAKPEASVWGSRLPFNTVCAEY-PSG----GWVHA 210 (377)
T ss_dssp CCSCEEEEEECTTSSEEEEEESS--------SCEEEEEEC-CSSCC-CCCSCSSCSCCCEEEEEECC-CCS----SSEEE
T ss_pred cCCCeEEEEEcCCCCEEEEEeCC--------CEEEEEEEE-ecccCCCccccccccccchhhhhhcc-cCC----ceEEE
Confidence 45567788999999998877632 348888875 2210 1 11112 333 45677
Q ss_pred ceeCCCCc-EEEEEecCCCceEEEEEEcCCCeE
Q 004816 303 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 303 ~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
+.|+|||+ |+..+. .+ .|.++|..+++.
T Consensus 211 ~~~sp~~~~l~~~~~--d~--~i~iwd~~~~~~ 239 (377)
T 3dwl_C 211 VGFSPSGNALAYAGH--DS--SVTIAYPSAPEQ 239 (377)
T ss_dssp EEECTTSSCEEEEET--TT--EEC-CEECSTTS
T ss_pred EEECCCCCEEEEEeC--CC--cEEEEECCCCCC
Confidence 89999999 554443 34 455567666653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.7e-07 Score=96.12 Aligned_cols=204 Identities=10% Similarity=0.106 Sum_probs=129.4
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCc
Q 004816 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (729)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 166 (729)
...+.++.|++ ++.|||++.. .+ .|++.+.+++ ..+.+...+ +....+.++.+.++.|+|.+...+.
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~---~~--~I~r~~~~g~-~~~~~~~~~------~~~p~glavd~~~g~lY~~d~~~~~ 182 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVT---LD--RILRANLNGS-NVEEVVSTG------LESPGGLAVDWVHDKLYWTDSGTSR 182 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETT---TT--EEEEEETTSC-CEEEEECSS------CSCCCCEEEETTTTEEEEEETTTTE
T ss_pred CCccEEEEEecCCCeEEEEeCC---CC--cEEEEecCCC-CcEEEEeCC------CCCccEEEEEeCCCeEEEEcCCCCe
Confidence 35677899998 9999999863 23 4777776622 333333222 1122233444457789999887889
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAF 245 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~ 245 (729)
|+++++++ ...+.+.... .....+.+++|++.+|+++.... ...|+++++++...+.+.. +...-.+
T Consensus 183 I~~~~~dg--~~~~~l~~~~---l~~P~giavdp~~g~ly~td~~~-------~~~I~r~~~dG~~~~~~~~~~~~~PnG 250 (386)
T 3v65_B 183 IEVANLDG--AHRKVLLWQS---LEKPRAIALHPMEGTIYWTDWGN-------TPRIEASSMDGSGRRIIADTHLFWPNG 250 (386)
T ss_dssp EEECBTTS--CSCEEEECSS---CSCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred EEEEeCCC--CceEEeecCC---CCCCcEEEEEcCCCeEEEeccCC-------CCEEEEEeCCCCCcEEEEECCCCCeee
Confidence 99999986 5555554331 13347788999999877764322 2579999999876666653 4445678
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 325 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~ 325 (729)
.+|+|++++|+|+... ...|++++++ +... ..+..... .....++. .++.+|++ +. +...|.
T Consensus 251 lavd~~~~~lY~aD~~-------~~~I~~~d~d-G~~~--~~~~~~~~----~~P~giav-~~~~ly~t-d~--~~~~V~ 312 (386)
T 3v65_B 251 LTIDYAGRRMYWVDAK-------HHVIERANLD-GSHR--KAVISQGL----PHPFAITV-FEDSLYWT-DW--HTKSIN 312 (386)
T ss_dssp EEEEGGGTEEEEEETT-------TTEEEEECTT-SCSC--EEEECSSC----SSEEEEEE-ETTEEEEE-ET--TTTEEE
T ss_pred EEEeCCCCEEEEEECC-------CCEEEEEeCC-CCee--EEEEECCC----CCceEEEE-ECCEEEEe-eC--CCCeEE
Confidence 9999999999988732 3569999987 3322 22333222 33345555 23335555 43 445788
Q ss_pred EEEcCCCe
Q 004816 326 KWIESNNE 333 (729)
Q Consensus 326 ~~d~~~g~ 333 (729)
+++..+|+
T Consensus 313 ~~~~~~G~ 320 (386)
T 3v65_B 313 SANKFTGK 320 (386)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 88854544
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-06 Score=87.70 Aligned_cols=199 Identities=12% Similarity=0.091 Sum_probs=123.8
Q ss_pred ECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 153 ~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
.++.|++.+...+.|+++++++ +..+.+.... .......+++|+++.|+++... ...|+++++++..
T Consensus 46 ~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~~---~~~p~~ia~d~~~~~lyv~d~~--------~~~I~~~~~~g~~ 112 (267)
T 1npe_A 46 VDKVVYWTDISEPSIGRASLHG--GEPTTIIRQD---LGSPEGIALDHLGRTIFWTDSQ--------LDRIEVAKMDGTQ 112 (267)
T ss_dssp TTTEEEEEETTTTEEEEEESSS--CCCEEEECTT---CCCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCS
T ss_pred CCCEEEEEECCCCEEEEEecCC--CCcEEEEECC---CCCccEEEEEecCCeEEEEECC--------CCEEEEEEcCCCC
Confidence 3568888887778999999987 5555443221 1234678899998887665432 2579999998766
Q ss_pred eEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 233 IQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 233 ~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
.+.+.. +.....+.+++|++.+|+++.... ....|++++++ |+.. ..+....- .....+++++|++.
T Consensus 113 ~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-----~~~~I~~~~~d--g~~~-~~~~~~~~----~~P~gia~d~~~~~ 180 (267)
T 1npe_A 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-----DNPKIETSHMD--GTNR-RILAQDNL----GLPNGLTFDAFSSQ 180 (267)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCS-----SSCEEEEEETT--SCCC-EEEECTTC----SCEEEEEEETTTTE
T ss_pred EEEEEECCCCCccEEEEeeCCCEEEEEECCC-----CCcEEEEEecC--CCCc-EEEEECCC----CCCcEEEEcCCCCE
Confidence 555543 324456779999999998877432 13569999886 3321 22222221 34567889998874
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL- 390 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~- 390 (729)
+|.++. +...|++++++++..+.+... ...| ..+.+ +++.+|++... ...|++++.++++.
T Consensus 181 lyv~d~--~~~~I~~~~~~g~~~~~~~~~---~~~P------~gi~~-----d~~~lyva~~~--~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 181 LCWVDA--GTHRAECLNPAQPGRRKVLEG---LQYP------FAVTS-----YGKNLYYTDWK--TNSVIAMDLAISKEM 242 (267)
T ss_dssp EEEEET--TTTEEEEEETTEEEEEEEEEC---CCSE------EEEEE-----ETTEEEEEETT--TTEEEEEETTTTEEE
T ss_pred EEEEEC--CCCEEEEEecCCCceEEEecC---CCCc------eEEEE-----eCCEEEEEECC--CCeEEEEeCCCCCce
Confidence 444444 446899999987655544321 1111 12222 56677775533 33688889887663
Q ss_pred Eeec
Q 004816 391 SLLD 394 (729)
Q Consensus 391 ~~lt 394 (729)
+.+.
T Consensus 243 ~~i~ 246 (267)
T 1npe_A 243 DTFH 246 (267)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 3443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=9e-07 Score=93.72 Aligned_cols=201 Identities=9% Similarity=-0.029 Sum_probs=122.5
Q ss_pred eeeecceecCCC-CEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee---CCCeeeeeeeCC-CCCeEEEEEecCCCC
Q 004816 191 VSYADGIFDPRF-NRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS---GSDFYAFPRMDP-RGERMAWIEWHHPNM 265 (729)
Q Consensus 191 ~~~~~~~~SPdG-~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~---~~~~~~~~~~SP-DG~~la~~~~~~~~~ 265 (729)
..+..++|+||| +.|+....+ ..|.++++.+++...... ........+|+| |++.|+..+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------ 138 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKG---------GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS------ 138 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBT---------SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE------
T ss_pred CCEEEEEECCCCCCEEEEEcCC---------CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe------
Confidence 446788999999 766555443 358899999877665543 345677889999 667776555
Q ss_pred CCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCcccc
Q 004816 266 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS 345 (729)
Q Consensus 266 ~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~ 345 (729)
....|.++|+. +... ..+.... .....+..+.|+||+++++.... .+ .|.++|+.+.....+......+.
T Consensus 139 --~d~~i~iwd~~-~~~~---~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 139 --IRGATTLRDFS-GSVI---QVFAKTD-SWDYWYCCVDVSVSRQMLATGDS-TG--RLLLLGLDGHEIFKEKLHKAKVT 208 (383)
T ss_dssp --TTTEEEEEETT-SCEE---EEEECCC-CSSCCEEEEEEETTTTEEEEEET-TS--EEEEEETTSCEEEEEECSSSCEE
T ss_pred --CCCEEEEEECC-CCce---EEEeccC-CCCCCeEEEEECCCCCEEEEECC-CC--CEEEEECCCCEEEEeccCCCcEE
Confidence 23458999987 4433 2222221 00044667899999995555444 34 56677776555555554333333
Q ss_pred CCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC----CceEeeccCCcceEEe-eee-CCEEEEEEeCCCC
Q 004816 346 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG----HSLSLLDIPFTDIDNI-TLG-NDCLFVEGASGVE 419 (729)
Q Consensus 346 ~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~----g~~~~lt~~~~~v~~~-~~~-~~~~~~~~~~~~~ 419 (729)
...|.+ +++.++++...++...|| |+.+ +...........+..+ ..+ ++.+++.++..
T Consensus 209 ~~~~~~------------~~~~~l~s~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d-- 272 (383)
T 3ei3_B 209 HAEFNP------------RCDWLMATSSVDATVKLW--DLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR-- 272 (383)
T ss_dssp EEEECS------------SCTTEEEEEETTSEEEEE--EGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS--
T ss_pred EEEECC------------CCCCEEEEEeCCCEEEEE--eCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC--
Confidence 344443 555467777778876666 5444 3333322445567776 444 55565655543
Q ss_pred CceEEEEEcCCCcc
Q 004816 420 PSSVAKVTLDDHKL 433 (729)
Q Consensus 420 ~~~ly~~d~~~~~~ 433 (729)
..+.++|+.+++.
T Consensus 273 -~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 273 -NEIRVYSSYDWSK 285 (383)
T ss_dssp -SEEEEEETTBTTS
T ss_pred -CcEEEEECCCCcc
Confidence 4788888887653
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.9e-09 Score=117.26 Aligned_cols=129 Identities=17% Similarity=0.138 Sum_probs=83.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc-------chhhhHHHhhC-CcEEEEecCCCCC-CCchh
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-------LNLSIQYWTSR-GWAFVDVNYGGST-GYGRE 538 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~-------~~~~~~~la~~-G~~v~~~d~rGs~-g~g~~ 538 (729)
|...+ .+|.|.... ...++.|+||++|||++...... +......|+.+ |++|+.+|||.+. |+...
T Consensus 79 dcl~l--nv~~P~~~~---~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~~ 153 (579)
T 2bce_A 79 DCLYL--NIWVPQGRK---EVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLST 153 (579)
T ss_dssp CCCEE--EEEEEECSS---SCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCC
T ss_pred CCCEE--EEEECCCCC---CCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCcC
Confidence 54444 456675421 01356899999999864322211 11123455554 7999999999421 21111
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccc
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGV 604 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~ 604 (729)
...... +...+.|+.++++|+.++ ...|++||.|+|+|+||+++..++. ....|+++|+.+|.
T Consensus 154 ~~~~~p---gn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 154 GDSNLP---GNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp SSTTCC---CCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred CCCCCC---CccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 000111 222378999999999875 3469999999999999999987776 35689999998874
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-07 Score=95.82 Aligned_cols=224 Identities=11% Similarity=0.006 Sum_probs=137.5
Q ss_pred EEEEECCCCcEEEEeCCCCCCC----CeecCCCCCCCceeeecceecCCCC-EEEEEEeccCCCCCCcceEEEEEEc-CC
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFN-RYVTVREDRRQDALNSTTEIVAIAL-NG 230 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~SPdG~-~l~~~~~~~~~~~~~~~~~l~~~dl-~~ 230 (729)
.+++...++.|.+|++.+ +. ...+... ...+..++|+|||+ .|+....+ ..|+++++ .+
T Consensus 25 ~l~~~~~d~~v~iw~~~~--~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d---------g~i~~wd~~~~ 89 (342)
T 1yfq_A 25 LLLITSWDGSLTVYKFDI--QAKNVDLLQSLRY----KHPLLCCNFIDNTDLQIYVGTVQ---------GEILKVDLIGS 89 (342)
T ss_dssp EEEEEETTSEEEEEEEET--TTTEEEEEEEEEC----SSCEEEEEEEESSSEEEEEEETT---------SCEEEECSSSS
T ss_pred EEEEEcCCCeEEEEEeCC--CCccccceeeeec----CCceEEEEECCCCCcEEEEEcCC---------CeEEEEEeccC
Confidence 344555678899999887 54 3444333 34567889999999 77666543 46999999 98
Q ss_pred CceEEeee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCC---------CCeeeeEEecCCCCCcccc
Q 004816 231 QNIQVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN---------GDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 231 g~~~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~---------g~~~~~~~~~~~~~~~~~~ 299 (729)
++...+.. .........|+| ++.|+..+. ...|.++|+. + ++. ...+. .. ..
T Consensus 90 ~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~--------d~~i~iwd~~-~~~~~~~~~~~~~--~~~~~-~~----~~ 152 (342)
T 1yfq_A 90 PSFQALTNNEANLGICRICKYG-DDKLIAASW--------DGLIEVIDPR-NYGDGVIAVKNLN--SNNTK-VK----NK 152 (342)
T ss_dssp SSEEECBSCCCCSCEEEEEEET-TTEEEEEET--------TSEEEEECHH-HHTTBCEEEEESC--SSSSS-SC----CC
T ss_pred CceEeccccCCCCceEEEEeCC-CCEEEEEcC--------CCeEEEEccc-ccccccccccCCe--eeEEe-eC----Cc
Confidence 88877766 666677889999 888876662 3458888887 3 321 11122 22 45
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCC-CeE--EEee-ccCccccCCcccccCcceeeeeecCC-CCEEEEEEEE
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESN-NEV--LAIY-SLDAEFSRPLWVFGINSYEIIQSHGE-KNLIACSYRQ 374 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~-g~~--~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~-~~~l~~~s~~ 374 (729)
+..+.|+|++ ++.... .+ .|.++|+.+ +.. .... .....+ ..+.|. . ++.++++...
T Consensus 153 v~~~~~~~~~-l~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~i---------~~i~~~----~~~~~~l~~~~~ 214 (342)
T 1yfq_A 153 IFTMDTNSSR-LIVGMN--NS--QVQWFRLPLCEDDNGTIEESGLKYQI---------RDVALL----PKEQEGYACSSI 214 (342)
T ss_dssp EEEEEECSSE-EEEEES--TT--EEEEEESSCCTTCCCEEEECSCSSCE---------EEEEEC----SGGGCEEEEEET
T ss_pred eEEEEecCCc-EEEEeC--CC--eEEEEECCccccccceeeecCCCCce---------eEEEEC----CCCCCEEEEEec
Confidence 5678899987 444433 23 466777776 432 2221 122122 223343 3 4556667777
Q ss_pred CCeEEEEEEECC-----CCceEeeccCCc---------ceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 375 NGRSYLGILDDF-----GHSLSLLDIPFT---------DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 375 ~g~~~ly~~d~~-----~g~~~~lt~~~~---------~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+|...||.++.. ......+..... .+..+ ..+++.+++.++.. ..++++|+.+++.
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~ 285 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD---GIISCWNLQTRKK 285 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT---SCEEEEETTTTEE
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC---ceEEEEcCccHhH
Confidence 888888877665 233444443322 56666 44455555555533 4688888887753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.69 E-value=7.8e-06 Score=84.47 Aligned_cols=285 Identities=12% Similarity=0.051 Sum_probs=156.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccc-cccccCCceEEEECC-EEEEEECCCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRT-TAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~i~~~~~~~~ 165 (729)
..+.+++|+| ++.+..+.. .++...+|...... ..... + .+. .-+...+.+..++++ ..+++...++
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s---~D~~i~vWd~~~~~--~~~~~-~----~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSAS---RDKTIIMWKLTRDE--TNYGI-P----QRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEE---TTSCEEEEEECCSS--SCSEE-E----EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCEEEEEEeCCCCCEEEEEc---CCCeEEEEECCCCC--cccce-e----eEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 4567899999 677776655 45788888875441 11000 0 000 002223344455433 4556666788
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee--CCCee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS--GSDFY 243 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~--~~~~~ 243 (729)
.|.+++... .......... ........++|+++.|+....+ ..+.++++.+.....+.. .....
T Consensus 109 ~i~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~s~d---------~~~~~~d~~~~~~~~~~~~~~~~~v 174 (340)
T 4aow_A 109 TLRLWDLTT--GTTTRRFVGH---TKDVLSVAFSSDNRQIVSGSRD---------KTIKLWNTLGVCKYTVQDESHSEWV 174 (340)
T ss_dssp EEEEEETTT--TEEEEEEECC---SSCEEEEEECTTSSCEEEEETT---------SCEEEECTTSCEEEEECSSSCSSCE
T ss_pred cceEEeecc--cceeeeecCC---CCceeEEEEeecCccceeecCC---------CeEEEEEeCCCceEEEEeccccCcc
Confidence 899999876 3322222111 2234556789999987765543 347777877554433321 23445
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceE
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 323 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~ 323 (729)
...+|++++...+++.... ...|.++|+. +++. ...+.+.. ..+..+.|+|||++++.... .+ .
T Consensus 175 ~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~-~~~~--~~~~~~h~----~~v~~~~~s~~~~~l~s~s~-Dg--~ 238 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGW------DKLVKVWNLA-NCKL--KTNHIGHT----GYLNTVTVSPDGSLCASGGK-DG--Q 238 (340)
T ss_dssp EEEEECSCSSSCEEEEEET------TSCEEEEETT-TTEE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TC--E
T ss_pred cceEEccCCCCcEEEEEcC------CCEEEEEECC-CCce--eeEecCCC----CcEEEEEECCCCCEEEEEeC-CC--e
Confidence 5678998876544444222 2348889988 6654 44555554 56677899999995555544 34 4
Q ss_pred EEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eec--------
Q 004816 324 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLD-------- 394 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt-------- 394 (729)
|.++|+.+++..........+. .+.|. +++.++.. ..++...| +|++++... .+.
T Consensus 239 i~iwd~~~~~~~~~~~~~~~v~---------~~~~~----~~~~~~~~-~~d~~i~i--wd~~~~~~~~~~~~~~~~~~~ 302 (340)
T 4aow_A 239 AMLWDLNEGKHLYTLDGGDIIN---------ALCFS----PNRYWLCA-ATGPSIKI--WDLEGKIIVDELKQEVISTSS 302 (340)
T ss_dssp EEEEETTTTEEEEEEECSSCEE---------EEEEC----SSSSEEEE-EETTEEEE--EETTTTEEEEEECCC------
T ss_pred EEEEEeccCceeeeecCCceEE---------eeecC----CCCceeec-cCCCEEEE--EECCCCeEEEeccccceeeec
Confidence 6667887776554443222222 22333 33444433 34665444 477665432 221
Q ss_pred -cCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 395 -IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 395 -~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.....|..+ ..+++.+++.++.. ..|+++++++|+
T Consensus 303 ~~h~~~v~~l~~s~dg~~l~sgs~D---g~v~iW~~~tGt 339 (340)
T 4aow_A 303 KAEPPQCTSLAWSADGQTLFAGYTD---NLVRVWQVTIGT 339 (340)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEETT---SCEEEEEEEC--
T ss_pred cCCCCCEEEEEECCCCCEEEEEeCC---CEEEEEeCCCcC
Confidence 122346666 44455566655543 356677777764
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=6.6e-06 Score=84.66 Aligned_cols=228 Identities=11% Similarity=0.047 Sum_probs=136.7
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC----Cc
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----QN 232 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~----g~ 232 (729)
|+|.. ...|.++++++ .....+... ......+.|+++++.|+++... ...|+++++++ ..
T Consensus 4 ll~~~--~~~I~~i~~~~--~~~~~~~~~----~~~p~g~~~d~~~~~ly~~D~~--------~~~I~~~~~~g~~~~~~ 67 (316)
T 1ijq_A 4 LFFTN--RHEVRKMTLDR--SEYTSLIPN----LRNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSS 67 (316)
T ss_dssp EEEEC--BSSEEEEETTS--CCCEEEECS----CSSEEEEEEETTTTEEEEEETT--------TTEEEEEEC--------
T ss_pred EEEEC--CCeEEEEECCC--cceEehhcC----CCceEEEEEEeCCCEEEEEECC--------CCcEEEEECCCCCCCcc
Confidence 56664 34699999987 655554433 2334678899999887776443 25799999987 33
Q ss_pred eEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-
Q 004816 233 IQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 310 (729)
Q Consensus 233 ~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~- 310 (729)
.+.+.. +.....+.+++++++.|+|+... ...|.+++++ +... ..+..... .....++..|++.
T Consensus 68 ~~~~~~~~~~~p~glavd~~~~~ly~~d~~-------~~~I~~~~~~-g~~~--~~~~~~~~----~~P~~iavdp~~g~ 133 (316)
T 1ijq_A 68 YDTVISRDIQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTK-GVKR--KTLFRENG----SKPRAIVVDPVHGF 133 (316)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETT-SSSE--EEEEECTT----CCEEEEEEETTTTE
T ss_pred cEEEEeCCCCCcCEEEEeecCCeEEEEECC-------CCEEEEEeCC-CCce--EEEEECCC----CCcceEEeCCCCCE
Confidence 344432 33344677888888889888632 3469999987 3332 22333221 3445677888666
Q ss_pred EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 311 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 311 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
|||. +. .....|+++++++...+.+.... + .| .+.+.+.+ +++.|||+.. +...|+++++++...
T Consensus 134 ly~~-d~-~~~~~I~~~~~dG~~~~~~~~~~--~---~~---P~gla~d~---~~~~lY~~D~--~~~~I~~~d~dg~~~ 198 (316)
T 1ijq_A 134 MYWT-DW-GTPAKIKKGGLNGVDIYSLVTEN--I---QW---PNGITLDL---LSGRLYWVDS--KLHSISSIDVNGGNR 198 (316)
T ss_dssp EEEE-EC-SSSCEEEEEETTSCCEEEEECSS--C---SC---EEEEEEET---TTTEEEEEET--TTTEEEEEETTSCSC
T ss_pred EEEE-cc-CCCCeEEEEcCCCCCeEEEEECC--C---CC---ceEEEEec---cCCEEEEEEC--CCCeEEEEecCCCce
Confidence 6655 43 22368999999876655554321 1 11 12334432 5778888753 445789999988776
Q ss_pred EeeccC---CcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 391 SLLDIP---FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 391 ~~lt~~---~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+.+... ......+..+++.+++... ....|++++..+|+
T Consensus 199 ~~~~~~~~~~~~P~giav~~~~ly~~d~---~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 199 KTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS 240 (316)
T ss_dssp EEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred EEEeecCCccCCcEEEEEECCEEEEEEC---CCCeEEEEeCCCCc
Confidence 655432 2223455445666666442 23578888876554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-06 Score=88.49 Aligned_cols=243 Identities=9% Similarity=0.008 Sum_probs=140.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC---CEEEEEECCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~ 164 (729)
..+..+.|+| ++.++.-. .++...+|...... +.....+.. +.....+..++. +.++++...+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~-~~~~~~~~~--------h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGET-HKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp CCEEEEEECSSSSEEEEEE----TTSCEEEEEEETTE-EEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ccEEEEEEcCCCCEEEEEE----CCCcEEEEecCCCc-ceeeeEecC--------CCCcEEEEEeCCCCCCCEEEEeccC
Confidence 3567889999 66554432 35777888765321 111111111 111233344431 3556666678
Q ss_pred CcEEEEeCCCCCCC---CeecCCCCCCCceeeecceecCC--CCEEEEEEeccCCCCCCcceEEEEEEcCCCc---eEEe
Q 004816 165 QRLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQN---IQVL 236 (729)
Q Consensus 165 ~~l~~~d~~~~~~~---~~~lt~~~~~~~~~~~~~~~SPd--G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~---~~~l 236 (729)
+.|.+||+.+ ++ ...+... ...+...+|+|+ |+.|+....+ ..|.++|+.++. ...+
T Consensus 79 g~v~iwd~~~--~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 79 GKVLIWKEEN--GRWSQIAVHAVH----SASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp SCEEEEEEET--TEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCTTSCCCEEEE
T ss_pred CEEEEEEcCC--CceeEeeeecCC----CcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCCCCceeeEEe
Confidence 8999999987 53 2333333 345688899999 8887766553 468889988763 2333
Q ss_pred eeCCCeeeeeeeCC-------------CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe--eeeEEecCCCCCcccccc
Q 004816 237 VSGSDFYAFPRMDP-------------RGERMAWIEWHHPNMPWDKAELWVGYISENGDV--YKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 237 t~~~~~~~~~~~SP-------------DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~--~~~~~~~~~~~~~~~~~~ 301 (729)
...........|+| |++.|+.... ...|+++|+. ++.. .....+.+.. ..+.
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------dg~i~i~d~~-~~~~~~~~~~~~~~h~----~~v~ 210 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--------DNLVKIWKYN-SDAQTYVLESTLEGHS----DWVR 210 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEET--------TSCEEEEEEE-TTTTEEEEEEEECCCS----SCEE
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC--------CCeEEEEEec-CCCcceeeEEEEeccc----CcEe
Confidence 44455677889999 7998877662 2348889987 4432 1223444444 5667
Q ss_pred CceeCCC---CcEEEEEecCCCceEEEEEEcCCCe---EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC
Q 004816 302 EPKWSSK---GELFFVTDRKNGFWNLHKWIESNNE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 375 (729)
Q Consensus 302 ~~~wspD---G~l~~~~~~~~g~~~l~~~d~~~g~---~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~ 375 (729)
.+.|+|| |++++.... .+. |.++|+.+++ ...+.... ...... ..+.|.+ +++. +++...+
T Consensus 211 ~~~~sp~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~-~~~~~v-----~~~~~s~---~g~~-l~~~~~d 277 (379)
T 3jrp_A 211 DVAWSPTVLLRSYLASVSQ-DRT--CIIWTQDNEQGPWKKTLLKEE-KFPDVL-----WRASWSL---SGNV-LALSGGD 277 (379)
T ss_dssp EEEECCCCSSSEEEEEEET-TSC--EEEEEESSTTSCCEEEESSSS-CCSSCE-----EEEEECS---SSCC-EEEEESS
T ss_pred EEEECCCCCCCCeEEEEeC-CCE--EEEEeCCCCCccceeeeeccc-cCCCcE-----EEEEEcC---CCCE-EEEecCC
Confidence 8899999 775555554 454 4455665553 22222111 111111 1233432 5554 4455568
Q ss_pred CeEEEEEEEC
Q 004816 376 GRSYLGILDD 385 (729)
Q Consensus 376 g~~~ly~~d~ 385 (729)
|..++|.++.
T Consensus 278 g~i~iw~~~~ 287 (379)
T 3jrp_A 278 NKVTLWKENL 287 (379)
T ss_dssp SSEEEEEEEE
T ss_pred CcEEEEeCCC
Confidence 8888888765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-06 Score=95.05 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=118.2
Q ss_pred CCceEEEECC--EEEEEECCCCcEEEEeCCCC---------CCCCeecCCCCCCCceeeecceecCCCC-EEEEEEeccC
Q 004816 146 GGGAFRIFGD--TVIFSNYKDQRLYKHSIDSK---------DSSPLPITPDYGEPLVSYADGIFDPRFN-RYVTVREDRR 213 (729)
Q Consensus 146 ~~~~~~~~~~--~i~~~~~~~~~l~~~d~~~~---------~~~~~~lt~~~~~~~~~~~~~~~SPdG~-~l~~~~~~~~ 213 (729)
....+.++++ .++++...++.|++|++... ......+... ...+...+|+|+++ .|+.. ...
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~-~~d- 203 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH----QKEGYGLSWNPNLNGYLLSA-SDD- 203 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC----SSCCCCEEECTTSTTEEEEE-CTT-
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC----CCCeEEEEeCCCCCCeEEEE-eCC-
Confidence 4455566654 57777777889999998640 0122222222 23457789999999 54444 322
Q ss_pred CCCCCcceEEEEEEcCCCc--------eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC-ee
Q 004816 214 QDALNSTTEIVAIALNGQN--------IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VY 284 (729)
Q Consensus 214 ~~~~~~~~~l~~~dl~~g~--------~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~-~~ 284 (729)
..|.++++.++. ...+..........+|+|++..++++... ...|+++|+. ++. ..
T Consensus 204 -------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~-------dg~i~i~d~~-~~~~~~ 268 (430)
T 2xyi_A 204 -------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD-------DQKLMIWDTR-NNNTSK 268 (430)
T ss_dssp -------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET-------TSEEEEEETT-CSCSSS
T ss_pred -------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC-------CCeEEEEECC-CCCCCc
Confidence 458888988632 12233334456778999955555444422 3459999998 442 12
Q ss_pred eeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCC-e-EEEeeccCccccCCcccccCcceeeeee
Q 004816 285 KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN-E-VLAIYSLDAEFSRPLWVFGINSYEIIQS 361 (729)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g-~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~ 361 (729)
....+.... ..+..+.|+|+++ ++++... .+. |.++|+.+. + ...+......+....|++
T Consensus 269 ~~~~~~~~~----~~v~~i~~~p~~~~~l~tg~~-dg~--v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp---------- 331 (430)
T 2xyi_A 269 PSHTVDAHT----AEVNCLSFNPYSEFILATGSA-DKT--VALWDLRNLKLKLHSFESHKDEIFQVQWSP---------- 331 (430)
T ss_dssp CSEEEECCS----SCEEEEEECSSCTTEEEEEET-TSE--EEEEETTCTTSCSEEEECCSSCEEEEEECS----------
T ss_pred ceeEeecCC----CCeEEEEeCCCCCCEEEEEeC-CCe--EEEEeCCCCCCCeEEeecCCCCEEEEEECC----------
Confidence 233444444 5667889999998 7777665 454 666677652 2 233332333333334443
Q ss_pred cCCCCEEEEEEEECCeEEEEEEE
Q 004816 362 HGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 362 ~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
+++.++++...++...||-+.
T Consensus 332 --~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 332 --HNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp --SCTTEEEEEETTSCCEEEEGG
T ss_pred --CCCCEEEEEeCCCcEEEEeCC
Confidence 666777788778877777554
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-06 Score=90.82 Aligned_cols=157 Identities=11% Similarity=0.073 Sum_probs=98.3
Q ss_pred CceEEEEC--CEEEEEECCCCcEEEEeCCCCCCCCeecCC----------CCCCCceeeecceecC-CCCEEEEEEeccC
Q 004816 147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSSPLPITP----------DYGEPLVSYADGIFDP-RFNRYVTVREDRR 213 (729)
Q Consensus 147 ~~~~~~~~--~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~----------~~~~~~~~~~~~~~SP-dG~~l~~~~~~~~ 213 (729)
+.+..+++ +.++++...++.|.+|++.+ +....... ........+...+|+| +++.|+....+
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-- 121 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLEN--SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD-- 121 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCC--CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT--
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCC--CcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC--
Confidence 33444543 35566666788999999987 43222111 0000134567889999 56655544332
Q ss_pred CCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCC---CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec
Q 004816 214 QDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDP---RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA 290 (729)
Q Consensus 214 ~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SP---DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~ 290 (729)
..|.++++.+++...............|+| +++.|+... . ...|.++|+. +++. ...+.
T Consensus 122 -------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~v~~~d~~-~~~~--~~~~~ 183 (408)
T 4a11_B 122 -------KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT-R-------GPKVQLCDLK-SGSC--SHILQ 183 (408)
T ss_dssp -------SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEE-S-------SSSEEEEESS-SSCC--CEEEC
T ss_pred -------CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEc-C-------CCeEEEEeCC-Ccce--eeeec
Confidence 469999999987766655555556677777 444666555 2 2349999998 5654 44555
Q ss_pred CCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCC
Q 004816 291 GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 291 ~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g 332 (729)
... ..+..+.|+|+++ +++.... .+. |.++|+.++
T Consensus 184 ~~~----~~v~~~~~~~~~~~ll~~~~~-dg~--i~i~d~~~~ 219 (408)
T 4a11_B 184 GHR----QEILAVSWSPRYDYILATASA-DSR--VKLWDVRRA 219 (408)
T ss_dssp CCC----SCEEEEEECSSCTTEEEEEET-TSC--EEEEETTCS
T ss_pred CCC----CcEEEEEECCCCCcEEEEEcC-CCc--EEEEECCCC
Confidence 554 5667889999998 7777665 454 555566554
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-05 Score=80.11 Aligned_cols=250 Identities=8% Similarity=-0.017 Sum_probs=137.9
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC-cccCCCCCcccccccccCCceEEEEC---CEEEEEECCC
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYKD 164 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~ 164 (729)
.+..++|+| |+.++- .. .++...||..... .++. ..+.. |.....+..++. +.++++...+
T Consensus 11 ~V~~~~~s~~g~~las-~s---~D~~v~iw~~~~~-~~~~~~~l~g---------H~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMAT-CS---SDKTIKIFEVEGE-THKLIDTLTG---------HEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp CEEEEEECTTSSEEEE-EE---TTSCEEEEEBCSS-CBCCCEEECC---------CSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ceEEEEECCCCCEEEE-Ee---CCCEEEEEecCCC-CcEEEEEEcc---------ccCCeEEEEecCCCcCCEEEEEcCC
Confidence 456789999 665443 32 4577788876432 1111 11111 111223334432 4566777778
Q ss_pred CcEEEEeCCCCCCCCe---ecCCCCCCCceeeecceecCC--CCEEEEEEeccCCCCCCcceEEEEEEcCCCc---eEEe
Q 004816 165 QRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQN---IQVL 236 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~SPd--G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~---~~~l 236 (729)
+.|.+||+.+ +... .+... ...+...+|+|+ |+.|+....+ ..|.++++.++. ...+
T Consensus 77 ~~v~iWd~~~--~~~~~~~~~~~h----~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~~~~~~~~~~ 141 (297)
T 2pm7_B 77 GKVMIWKEEN--GRWSQIAVHAVH----SASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKENGTTSPIII 141 (297)
T ss_dssp TEEEEEEBSS--SCBCCCEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCSSSCBCCEEE
T ss_pred CEEEEEEcCC--CceEEEEEeecC----CCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecCCCceeeeee
Confidence 8999999986 5322 22222 345678899998 8876655543 468888887653 2333
Q ss_pred eeCCCeeeeeeeCCC-------------CCeEEEEEecCCCCCCCCcEEEEEEecCCCCe--eeeEEecCCCCCcccccc
Q 004816 237 VSGSDFYAFPRMDPR-------------GERMAWIEWHHPNMPWDKAELWVGYISENGDV--YKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 237 t~~~~~~~~~~~SPD-------------G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~--~~~~~~~~~~~~~~~~~~ 301 (729)
..........+|+|+ ++.|+..+. ...|.++|+. ++.. .....+.+.. ..+.
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~--------D~~v~lwd~~-~~~~~~~~~~~l~~H~----~~V~ 208 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--------DNLVKIWKYN-SDAQTYVLESTLEGHS----DWVR 208 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEET--------TSCEEEEEEE-TTTTEEEEEEEECCCS----SCEE
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcC--------CCcEEEEEEc-CCCceEEEEEEecCCC----CceE
Confidence 334445667899997 466665542 2348888887 4441 1233455554 5677
Q ss_pred CceeCCCC---cEEEEEecCCCceEEEEEEcCCCe-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 302 EPKWSSKG---ELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 302 ~~~wspDG---~l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
.++|+||+ +++..... .+.-.||-++...+. ...+.... ......| .+.|.+ +++ ++++...++.
T Consensus 209 ~v~~sp~~~~~~~las~s~-D~~v~iWd~~~~~~~~~~~~~~~~-~~~~~v~-----~~~~s~---~g~-~las~~~D~~ 277 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQ-DRTCIIWTQDNEQGPWKKTLLKEE-KFPDVLW-----RASWSL---SGN-VLALSGGDNK 277 (297)
T ss_dssp EEEECCCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSS-CCSSCEE-----EEEECS---SSC-CEEEEETTSC
T ss_pred EEEECCCCCCceEEEEEEC-CCcEEEEEeCCCCCccceeeeecc-cCCCcEE-----EEEECC---CCC-EEEEEcCCCc
Confidence 89999996 44444444 455556544322222 12222111 1112222 234442 544 4556667888
Q ss_pred EEEEEEECCCCceEee
Q 004816 378 SYLGILDDFGHSLSLL 393 (729)
Q Consensus 378 ~~ly~~d~~~g~~~~l 393 (729)
.+||..+.+ |.++.+
T Consensus 278 v~lw~~~~~-g~w~~~ 292 (297)
T 2pm7_B 278 VTLWKENLE-GKWEPA 292 (297)
T ss_dssp EEEEEECTT-SCEEEC
T ss_pred EEEEEECCC-CcEEec
Confidence 899987654 444433
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-06 Score=89.71 Aligned_cols=206 Identities=10% Similarity=0.085 Sum_probs=125.1
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCC---CCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAG---DEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~---g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (729)
..+.++.|++ ++.+||++.. .+ .|++.+.++. .....+++.. +....+.++.+.++.|++.+...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~---~~--~I~~~~~~g~~~~~~~~~~~~~~------~~~p~glavd~~~~~ly~~d~~~ 98 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLS---QR--MICSTQLDRAHGVSSYDTVISRD------IQAPDGLAVDWIHSNIYWTDSVL 98 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETT---TT--EEEEEEC--------CEEEECSS------CSCCCEEEEETTTTEEEEEETTT
T ss_pred CceEEEEEEeCCCEEEEEECC---CC--cEEEEECCCCCCCcccEEEEeCC------CCCcCEEEEeecCCeEEEEECCC
Confidence 4678999999 8999999863 23 4666665520 1222232211 11222333333467888988878
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFY 243 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~ 243 (729)
+.|.++++++ ...+.+.... .....+.+++|++.+|+++.... ...|+++++++...+.+.. ....-
T Consensus 99 ~~I~~~~~~g--~~~~~~~~~~---~~~P~~iavdp~~g~ly~~d~~~-------~~~I~~~~~dG~~~~~~~~~~~~~P 166 (316)
T 1ijq_A 99 GTVSVADTKG--VKRKTLFREN---GSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLNGVDIYSLVTENIQWP 166 (316)
T ss_dssp TEEEEEETTS--SSEEEEEECT---TCCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCCEEEEECSSCSCE
T ss_pred CEEEEEeCCC--CceEEEEECC---CCCcceEEeCCCCCEEEEEccCC-------CCeEEEEcCCCCCeEEEEECCCCCc
Confidence 8999999986 5555444321 23457888999888877664321 2579999998766665543 34456
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceE
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 323 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~ 323 (729)
.+.+|+|++++|+|+... ...|+++|++ +... ..+....... .....++.. ++.+|++ +. +...
T Consensus 167 ~gla~d~~~~~lY~~D~~-------~~~I~~~d~d-g~~~--~~~~~~~~~~--~~P~giav~-~~~ly~~-d~--~~~~ 230 (316)
T 1ijq_A 167 NGITLDLLSGRLYWVDSK-------LHSISSIDVN-GGNR--KTILEDEKRL--AHPFSLAVF-EDKVFWT-DI--INEA 230 (316)
T ss_dssp EEEEEETTTTEEEEEETT-------TTEEEEEETT-SCSC--EEEEECTTTT--SSEEEEEEE-TTEEEEE-ET--TTTE
T ss_pred eEEEEeccCCEEEEEECC-------CCeEEEEecC-CCce--EEEeecCCcc--CCcEEEEEE-CCEEEEE-EC--CCCe
Confidence 788999999999988732 3469999987 3332 2222221100 223344552 2336554 44 4467
Q ss_pred EEEEEcCCCe
Q 004816 324 LHKWIESNNE 333 (729)
Q Consensus 324 l~~~d~~~g~ 333 (729)
|.+++..+|+
T Consensus 231 V~~~~~~~g~ 240 (316)
T 1ijq_A 231 IFSANRLTGS 240 (316)
T ss_dssp EEEEETTTCC
T ss_pred EEEEeCCCCc
Confidence 8999886654
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.66 E-value=3e-08 Score=106.31 Aligned_cols=111 Identities=11% Similarity=-0.049 Sum_probs=76.1
Q ss_pred CCCCEEEEEcCCCCCCccccchh-hhHHH-hhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNL-SIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~-~~~~l-a~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
...|+||++||...+. ...|.. .+..| ...+|.|+++|++|.+... +..... +. ....+++...+++|.++..
T Consensus 67 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~~-~~-~~v~~~la~ll~~L~~~~g 141 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSGSRTA--YSQASQ-NV-RIVGAEVAYLVGVLQSSFD 141 (449)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHHHSSC--HHHHHH-HH-HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcccCCc--cHHHHH-HH-HHHHHHHHHHHHHHHHhcC
Confidence 3458999999975432 223443 44555 4569999999999754432 111110 00 0114567778888865434
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
++.+++.|+|||+||.+|+.++. +|++++.++.+.|..
T Consensus 142 ~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~ 180 (449)
T 1hpl_A 142 YSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE 180 (449)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence 56789999999999999999998 899999999888753
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.66 E-value=5e-06 Score=86.64 Aligned_cols=227 Identities=10% Similarity=0.008 Sum_probs=127.2
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCC--------CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSS--------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~--------~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
+.++++...++.|.+|++.. ++ ...+... ...+...+|+|||+.++....+ ..|.++
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~--~~~~~~~~~~~~~l~~h----~~~V~~~~~~~~~~~l~s~s~D---------~~v~lw 103 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYE--EEQNGYFGIPHKALTGH----NHFVSDLALSQENCFAISSSWD---------KTLRLW 103 (343)
T ss_dssp CCEEEEEETTSCEEEEEECS--SCCSSBSEEEEEEECCC----SSCEEEEEECSSTTEEEEEETT---------SEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCc--CCcccccccccchhccC----CCceEEEEECCCCCEEEEEcCC---------CcEEEE
Confidence 35666777788899999864 22 1223333 3456788999999987655543 468899
Q ss_pred EcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec--CCCCCccccccCc
Q 004816 227 ALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA--GFDPTIVESPTEP 303 (729)
Q Consensus 227 dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~--~~~~~~~~~~~~~ 303 (729)
|+.+++.. .+..........+|||||++|+-.+. ...|.++|+. +... ..... +.. ..+..+
T Consensus 104 d~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~--------d~~i~~wd~~-~~~~--~~~~~~~~~~----~~v~~~ 168 (343)
T 2xzm_R 104 DLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA--------EREIKLWNIL-GECK--FSSAEKENHS----DWVSCV 168 (343)
T ss_dssp ETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET--------TSCEEEEESS-SCEE--EECCTTTSCS----SCEEEE
T ss_pred ECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC--------CCEEEEEecc-CCce--eeeecccCCC----ceeeee
Confidence 99987754 44444556778899999999886652 2348888886 3221 11111 222 345567
Q ss_pred eeCCCC----------cEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEE
Q 004816 304 KWSSKG----------ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 373 (729)
Q Consensus 304 ~wspDG----------~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~ 373 (729)
.|+|++ .+++.... .+ .|.++|........+......+.. +.|.+ +++ ++++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~h~~~v~~---------~~~s~---~g~-~l~sgs 232 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGW-DG--RLKVWNTNFQIRYTFKAHESNVNH---------LSISP---NGK-YIATGG 232 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEET-TS--EEEEEETTTEEEEEEECCSSCEEE---------EEECT---TSS-EEEEEE
T ss_pred eeccccccccccCCCCCEEEEEcC-CC--EEEEEcCCCceeEEEcCccccceE---------EEECC---CCC-EEEEEc
Confidence 788886 44444443 34 455556443333333333322323 33432 554 555666
Q ss_pred ECCeEEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 374 QNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 374 ~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.+|...||-+. ..+. ...+. ....+..+ ..+++.++..+. . ..+.++++.+++.
T Consensus 233 ~dg~v~iwd~~-~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~-d---~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 233 KDKKLLIWDIL-NLTYPQREFD-AGSTINQIAFNPKLQWVAVGT-D---QGVKIFNLMTQSK 288 (343)
T ss_dssp TTCEEEEEESS-CCSSCSEEEE-CSSCEEEEEECSSSCEEEEEE-S---SCEEEEESSSCCS
T ss_pred CCCeEEEEECC-CCcccceeec-CCCcEEEEEECCCCCEEEEEC-C---CCEEEEEeCCCCC
Confidence 77876666431 2222 22222 22346666 444455554332 2 2467777776653
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.2e-08 Score=106.12 Aligned_cols=110 Identities=11% Similarity=-0.025 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCCCCccccchh-hhHHHhh-CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNL-SIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~-~~~~la~-~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
...|+||++||...+. ...|.. ....+.+ .+|.|+++|++|.+... +...... -....+|+...+++|.++..
T Consensus 68 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~~~--~~~~a~~l~~ll~~L~~~~g 142 (450)
T 1rp1_A 68 TDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTS--YTQAANN--VRVVGAQVAQMLSMLSANYS 142 (450)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSC--HHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCc--chHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 3468999999975433 223433 4455555 48999999999743321 1111100 00125677788888864433
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
++.+++.|+||||||.+|+.++. +|+ ++.++.+.|..
T Consensus 143 ~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~ 180 (450)
T 1rp1_A 143 YSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE 180 (450)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred CChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence 56789999999999999999988 888 99999887753
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.65 E-value=8.3e-06 Score=84.01 Aligned_cols=241 Identities=9% Similarity=-0.029 Sum_probs=133.5
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~ 168 (729)
.+..+.|+|++....... .++...+|....+ +....+.. +.....+..++++ .++++...++.|.
T Consensus 67 ~v~~~~~s~dg~~l~s~s---~D~~v~~wd~~~~---~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 67 IVQDCTLTADGAYALSAS---WDKTLRLWDVATG---ETYQRFVG--------HKSDVMSVDIDKKASMIISGSRDKTIK 132 (319)
T ss_dssp CEEEEEECTTSSEEEEEE---TTSEEEEEETTTT---EEEEEEEC--------CSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred cEEEEEECCCCCEEEEEe---CCCEEEEEECCCC---CeeEEEcc--------CCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 456778898333333333 3577777765432 22111111 1112333444433 4566666788899
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCC------CEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-eeeCCC
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF------NRYVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVSGSD 241 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG------~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~~~~ 241 (729)
+|++.+ .....+... ...+....|+|++ ..|+....+ ..|.++|+.+++... +.....
T Consensus 133 vwd~~~--~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~h~~ 197 (319)
T 3frx_A 133 VWTIKG--QCLATLLGH----NDWVSQVRVVPNEKADDDSVTIISAGND---------KMVKAWNLNQFQIEADFIGHNS 197 (319)
T ss_dssp EEETTS--CEEEEECCC----SSCEEEEEECCC------CCEEEEEETT---------SCEEEEETTTTEEEEEECCCCS
T ss_pred EEECCC--CeEEEEecc----CCcEEEEEEccCCCCCCCccEEEEEeCC---------CEEEEEECCcchhheeecCCCC
Confidence 999986 555555443 2445667788854 355444332 458888998876543 333445
Q ss_pred eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCc
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF 321 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~ 321 (729)
.....+|||||++|+-.+ ....|.++|+. +++. ...+... ..+..++|+|||.++..... +.
T Consensus 198 ~v~~~~~sp~g~~l~s~~--------~dg~i~iwd~~-~~~~--~~~~~~~-----~~v~~~~~sp~~~~la~~~~--~~ 259 (319)
T 3frx_A 198 NINTLTASPDGTLIASAG--------KDGEIMLWNLA-AKKA--MYTLSAQ-----DEVFSLAFSPNRYWLAAATA--TG 259 (319)
T ss_dssp CEEEEEECTTSSEEEEEE--------TTCEEEEEETT-TTEE--EEEEECC-----SCEEEEEECSSSSEEEEEET--TE
T ss_pred cEEEEEEcCCCCEEEEEe--------CCCeEEEEECC-CCcE--EEEecCC-----CcEEEEEEcCCCCEEEEEcC--CC
Confidence 667789999999988666 23459999998 5654 3333333 34567899999994444443 22
Q ss_pred eEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 322 WNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
+.+++.+++...... ...... ..........+.|.| +++ ++++...+|..+||.+.
T Consensus 260 --i~v~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp---dg~-~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 260 --IKVFSLDPQYLVDDLRPEFAGY-SKAAEPHAVSLAWSA---DGQ-TLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp --EEEEEETTEEEEEEECCCCTTC-CGGGCCCEEEEEECT---TSS-EEEEEETTSCEEEEEEE
T ss_pred --cEEEEeCcCeeeeccCcccccc-ccCcCcceeEEEECC---CCC-EEEEeecCceEEEEEEe
Confidence 445555554432222 111000 000011112345553 555 44566678888888664
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.8e-06 Score=91.80 Aligned_cols=212 Identities=8% Similarity=0.063 Sum_probs=122.5
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
..+.++.|+| ++.+++... .++...+|-.... ..+.+.... .. .....++.++.+ .++++...++.
T Consensus 165 ~~V~~l~f~p~~~~~l~s~s---~D~~v~iwd~~~~---~~~~~~~~~-~~-----~~~~~~~~~~~~~~~l~~g~~dg~ 232 (435)
T 4e54_B 165 GSITGLKFNPLNTNQFYASS---MEGTTRLQDFKGN---ILRVFASSD-TI-----NIWFCSLDVSASSRMVVTGDNVGN 232 (435)
T ss_dssp CCCCEEEECSSCTTEEEEEC---SSSCEEEEETTSC---EEEEEECCS-SC-----SCCCCCEEEETTTTEEEEECSSSB
T ss_pred CCEEEEEEeCCCCCEEEEEe---CCCEEEEeeccCC---ceeEEeccC-CC-----CccEEEEEECCCCCEEEEEeCCCc
Confidence 3567889998 666666554 3567777755321 222222111 00 111233445433 45666667889
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-Eee---eCCCe
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLV---SGSDF 242 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt---~~~~~ 242 (729)
|.+||+.+ .....+... ...+...+|+|+++.++++...+ ..|.++|+.+++.. .+. .....
T Consensus 233 i~~wd~~~--~~~~~~~~h----~~~v~~v~~~p~~~~~~~s~s~d--------~~v~iwd~~~~~~~~~~~~~~~h~~~ 298 (435)
T 4e54_B 233 VILLNMDG--KELWNLRMH----KKKVTHVALNPCCDWFLATASVD--------QTVKIWDLRQVRGKASFLYSLPHRHP 298 (435)
T ss_dssp EEEEESSS--CBCCCSBCC----SSCEEEEEECTTCSSEEEEEETT--------SBCCEEETTTCCSSSCCSBCCBCSSC
T ss_pred EeeeccCc--ceeEEEecc----cceEEeeeecCCCceEEEEecCc--------ceeeEEecccccccceEEEeeecccc
Confidence 99999986 655555544 34577889999998776665443 35777888765432 221 22345
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC-CCccccccCceeCCCCc-EEEEEecCCC
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-PTIVESPTEPKWSSKGE-LFFVTDRKNG 320 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~-~~~~~~~~~~~wspDG~-l~~~~~~~~g 320 (729)
....+|||||++|+..+. ...|.++|+. ++... ..+..... ..-........|+|++. ++..... .+
T Consensus 299 v~~~~~spdg~~l~s~~~--------D~~i~iwd~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~ 367 (435)
T 4e54_B 299 VNAACFSPDGARLLTTDQ--------KSEIRVYSAS-QWDCP-LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP-DP 367 (435)
T ss_dssp EEECCBCTTSSEEEEEES--------SSCEEEEESS-SSSSE-EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCC-CT
T ss_pred ccceeECCCCCeeEEEcC--------CCEEEEEECC-CCccc-eEEecccccccccceeEEEEEcCCCCEEEEEEcC-CC
Confidence 667899999999986662 2348899988 56532 12211111 00002234567999988 5444322 22
Q ss_pred ---------ceEEEEEEcCCCeEEEe
Q 004816 321 ---------FWNLHKWIESNNEVLAI 337 (729)
Q Consensus 321 ---------~~~l~~~d~~~g~~~~l 337 (729)
...|.++|..+|+....
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred CeEEEEecCCCEEEEEECCCCcEEEE
Confidence 13477888888875543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-05 Score=84.05 Aligned_cols=259 Identities=8% Similarity=0.002 Sum_probs=134.8
Q ss_pred CccCceEEcC-CCcEEEEeecC------CCCCceEEEEcCCCCCCCCcccCCCCCccccc-ccccCCceEEEECCEEEEE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRP------TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTT-AQEYGGGAFRIFGDTVIFS 160 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~------~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~ 160 (729)
..+ ++.+|| |+.+|...... ...+ .+..++..+ .+...-++-+...+.. ........++++++.+++.
T Consensus 67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~--~v~viD~~t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~ 142 (373)
T 2mad_H 67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTD--YVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFF 142 (373)
T ss_pred CCC-CeEECCCCCEEEEEeccccccccCCCCC--eEEEEECCC-CcEEEEEECCCccccccCCCccceEECCCCCEEEEE
Confidence 345 899999 88888876311 1122 233445441 1221111110000100 0112234566677788777
Q ss_pred ECC-CCcEEEEeCCCCCCCCeec-CCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-Eee
Q 004816 161 NYK-DQRLYKHSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLV 237 (729)
Q Consensus 161 ~~~-~~~l~~~d~~~~~~~~~~l-t~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt 237 (729)
+.. .+.|+++| ++ ++.... ...+ ..+.+.|+|++.++..... ..+.+++. +++.. ...
T Consensus 143 n~~~~~~v~viD-~t--~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~d--------g~~~~vd~-~g~~~~~~~ 203 (373)
T 2mad_H 143 QFAAGPAVGLVV-QG--GSSDDQLLSSP-------TCYHIHPGAPSTFYLLCAQ--------GGLAKTDH-AGGAAGAGL 203 (373)
T ss_pred ecCCCCeEEEEE-CC--CCEEeEEcCCC-------ceEEEEeCCCceEEEEcCC--------CCEEEEEC-CCcEEEEEe
Confidence 654 56899999 87 654332 3321 1245678887655443322 34677788 66544 221
Q ss_pred -----eCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEe---cCC--CCCcc-ccccCcee
Q 004816 238 -----SGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV---AGF--DPTIV-ESPTEPKW 305 (729)
Q Consensus 238 -----~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~---~~~--~~~~~-~~~~~~~w 305 (729)
.+. .....+.+++|+..++|... ...++++|+. ++.......+ ... ...|. .....+.+
T Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--------~~~v~vid~~-~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVY--------SGKILQADIS-AAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred ccccccCCcceeecceeEecCCEEEEEcC--------CceEEEEecc-CCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 111 12245778999999888872 2359999987 4432111111 100 00110 11122568
Q ss_pred CCCCc-EEEEEecC------CCceEEEEEEcCCCeE-EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 306 SSKGE-LFFVTDRK------NGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 306 spDG~-l~~~~~~~------~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
+|||+ +|...+.. .+...|+++|+++++. +.|. ...... .+.|.+ |++.+++..+. +.
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~---------~i~~s~---Dg~~~l~v~~~-~~ 340 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVD---------AISVAQ---DGGPDLYALSA-GT 340 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcC---------eEEECC---CCCeEEEEEcC-CC
Confidence 89988 55544320 1235799999999876 3443 221111 233443 77745555442 33
Q ss_pred EEEEEEECCCCceEee
Q 004816 378 SYLGILDDFGHSLSLL 393 (729)
Q Consensus 378 ~~ly~~d~~~g~~~~l 393 (729)
..|+++|.+++++...
T Consensus 341 ~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 341 EVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEECCCCCEEee
Confidence 5789999998876533
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-05 Score=85.22 Aligned_cols=286 Identities=9% Similarity=0.031 Sum_probs=153.0
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC--ceEEEECCEEEEEECCCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIFGDTVIFSNYKDQ 165 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~ 165 (729)
..+..+.|+| ++.++ ... .++...+|....+ +....+.. +.... .+|++++. .+++...++
T Consensus 67 ~~V~~~~~sp~~~~l~-s~s---~D~~v~iWd~~~~---~~~~~~~~--------h~~~v~~~~~s~~g~-~las~~~d~ 130 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIV-SAS---QDGRLIVWNALTS---QKTHAIKL--------HCPWVMECAFAPNGQ-SVACGGLDS 130 (380)
T ss_dssp SCEEEEEECTTSSCEE-EEE---TTSEEEEEETTTT---EEEEEEEC--------CCTTCCCCEECTTSS-EEEECCSSS
T ss_pred cEEEEEEEcCCCCEEE-EEe---CCCeEEEEECCCC---ccceEEec--------CCCCEEEEEECCCCC-EEEEeeCCC
Confidence 4567889999 65544 332 4677778865433 21111111 11112 23333333 455556677
Q ss_pred cEEEEeCCCCCCC--------CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee
Q 004816 166 RLYKHSIDSKDSS--------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV 237 (729)
Q Consensus 166 ~l~~~d~~~~~~~--------~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt 237 (729)
.+.+|++.+ .. .+.+... ...+....|+|++...+++...+ ..|.++|+.+++.....
T Consensus 131 ~v~iw~~~~--~~~~~~~~~~~~~~~gh----~~~v~~~~~~~~~~~~l~s~s~D--------~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 131 ACSIFNLSS--QADRDGNMPVSRVLTGH----KGYASSCQYVPDQETRLITGSGD--------QTCVLWDVTTGQRISIF 196 (380)
T ss_dssp CCEEEECCC--CSSCCCSSTTCCBCCCC----SSCCCCCBCCSSSSSCEEEECTT--------SCEEEECTTTCCEEEEE
T ss_pred cEEEEECCC--CccccCCccceeeccCC----CcceEEEEEecCCCCEEEEECCC--------CcEEEEEcCCCcEEEEe
Confidence 888888864 21 1223322 23456778999765434444332 45888999988765443
Q ss_pred e------CCCeeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 238 S------GSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 238 ~------~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
. .........|+| |++.|+-.+. ...|.++|+...+.. ...+.+.. ..+..+.|+|||+
T Consensus 197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~--------D~~v~~wd~~~~~~~--~~~~~~h~----~~v~~v~~~p~~~ 262 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINSLNANMFISGSC--------DTTVRLWDLRITSRA--VRTYHGHE----GDINSVKFFPDGQ 262 (380)
T ss_dssp CCCSSSSCCSCEEEEEECSSSCCEEEEEET--------TSCEEEEETTTTCCC--CEEECCCS----SCCCEEEECTTSS
T ss_pred ecccCCCCccCeEEEEeecCCCCEEEEEEC--------CCeEEEEECCCCCcc--eEEECCcC----CCeEEEEEecCCC
Confidence 1 123345567866 8887765552 234888998622332 45566665 6678899999999
Q ss_pred EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 311 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 311 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
+++.... .+ .|.++|+.+++........... ...-.+....+.|.+ +++ ++++...+|...| +|...++.
T Consensus 263 ~l~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~---~g~-~l~~g~~dg~i~v--wd~~~~~~ 332 (380)
T 3iz6_a 263 RFGTGSD-DG--TCRLFDMRTGHQLQVYNREPDR-NDNELPIVTSVAFSI---SGR-LLFAGYSNGDCYV--WDTLLAEM 332 (380)
T ss_dssp EEEEECS-SS--CEEEEETTTTEEEEEECCCCSS-SCCSSCSCSEEEECS---SSS-EEEEECTTSCEEE--EETTTCCE
T ss_pred eEEEEcC-CC--eEEEEECCCCcEEEEecccccc-cccccCceEEEEECC---CCC-EEEEEECCCCEEE--EECCCCce
Confidence 5555443 34 4666788888765544221110 000111123455653 554 4555555665555 47666554
Q ss_pred E-ee----ccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 391 S-LL----DIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 391 ~-~l----t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
. .+ ......|..+ ..+++.+++.++. + ..+.++++.+.
T Consensus 333 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D--~~i~iW~~~~~ 376 (380)
T 3iz6_a 333 VLNLGTLQNSHEGRISCLGLSSDGSALCTGSW-D--KNLKIWAFSGH 376 (380)
T ss_dssp EEEECCSCSSCCCCCCEEEECSSSSEEEEECT-T--SCEEEEECCSS
T ss_pred EEEEecccCCCCCceEEEEECCCCCEEEEeeC-C--CCEEEEecCCC
Confidence 3 33 1233456666 4445555555543 3 24555555554
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-05 Score=81.09 Aligned_cols=152 Identities=9% Similarity=-0.016 Sum_probs=90.7
Q ss_pred ceEEEECC-EEEEEECCCCcEEEEeCCCCCCC--------CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCC
Q 004816 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS--------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (729)
Q Consensus 148 ~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~--------~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~ 218 (729)
.+..++++ .++++...++.|.+|++.. .. ...+... ...+...+|||||++|+....+
T Consensus 62 ~~v~~sp~~~~las~s~D~~v~iw~~~~--~~~~~~~~~~~~~~~~h----~~~V~~v~~sp~g~~las~s~D------- 128 (330)
T 2hes_X 62 RSVAWRPHTSLLAAGSFDSTVSIWAKEE--SADRTFEMDLLAIIEGH----ENEVKGVAWSNDGYYLATCSRD------- 128 (330)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEC---------CCCEEEEEEC--------CEEEEEECTTSCEEEEEETT-------
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEccc--CcCccccceeEEEEcCC----CCcEEEEEECCCCCEEEEEeCC-------
Confidence 34444433 4555666788899998853 21 1122222 3456788999999987766554
Q ss_pred cceEEEEEEcC-CCc---e-EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC
Q 004816 219 STTEIVAIALN-GQN---I-QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 293 (729)
Q Consensus 219 ~~~~l~~~dl~-~g~---~-~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~ 293 (729)
..|.++|+. +++ . ..+...........|+|||+.|+-.+.+ ..|.++|+. ++.......+.+..
T Consensus 129 --~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D--------~~i~iW~~~-~~~~~~~~~~~~h~ 197 (330)
T 2hes_X 129 --KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD--------DTVRIWKDY-DDDWECVAVLNGHE 197 (330)
T ss_dssp --SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT--------SCEEEEEEE-TTEEEEEEEECCCS
T ss_pred --CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC--------CeEEEEECC-CCCeeEEEEccCCC
Confidence 358888884 322 1 2233344567788999999988766632 337777876 45333345566665
Q ss_pred CCccccccCceeCCC--CcEEEEEecCCCceEEEEEE
Q 004816 294 PTIVESPTEPKWSSK--GELFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 294 ~~~~~~~~~~~wspD--G~l~~~~~~~~g~~~l~~~d 328 (729)
..+..+.|+|+ +.+++.... .+.-+||.+.
T Consensus 198 ----~~v~~~~~~~~~~~~~l~s~s~-D~~v~iw~~~ 229 (330)
T 2hes_X 198 ----GTVWSSDFDKTEGVFRLCSGSD-DSTVRVWKYM 229 (330)
T ss_dssp ----SCEEEEEECCSSSSCEEEEEET-TSCEEEEEEE
T ss_pred ----CcEEEEEecCCCCeeEEEEEeC-CCeEEEEEec
Confidence 55677889999 444444444 4666666543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.62 E-value=7.5e-06 Score=87.18 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=140.5
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC----C
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----Q 231 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~----g 231 (729)
.++|.. ...|.++++++ .....+... ......+.|+++++.|+++.... ..|+++++++ +
T Consensus 85 ~ll~~~--~~~I~~i~l~~--~~~~~~~~~----~~~~~~l~~d~~~~~lywsD~~~--------~~I~~~~~~g~~~~~ 148 (400)
T 3p5b_L 85 YLFFTN--RHEVRKMTLDR--SEYTSLIPN----LRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVS 148 (400)
T ss_dssp EEEEEE--TTEEEEECTTS--CSCEEEECS----CSCEEEEEEETTTTEEEEEETTT--------TEEEEEEC------C
T ss_pred eeEEec--cceeEEEccCC--cceeEeccc----cCcceEEeeeeccCceEEEecCC--------CeEEEEEcccCCCCC
Confidence 456664 45799999987 655555443 23446778999888877764332 5799999986 2
Q ss_pred ceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 232 NIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 232 ~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
....+.. +.....+.++.+.++.|+|+... ...|.+++++ +... ..+....- .....++..|.+.
T Consensus 149 ~~~~~~~~~~~~p~glavD~~~~~lY~~d~~-------~~~I~~~~~~-g~~~--~~l~~~~~----~~P~~iavdp~~g 214 (400)
T 3p5b_L 149 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTK-GVKR--KTLFRENG----SKPRAIVVDPVHG 214 (400)
T ss_dssp CCEEEECSSCSCEEEEEEETTTTEEEEEETT-------TTEEEEECTT-TCSE--EEEEECSS----CCEEEEEEETTTT
T ss_pred cceEEEeCCCCCcccEEEEecCCceEEEECC-------CCeEEEEeCC-CCce--EEEEeCCC----CCcceEEEecccC
Confidence 3444433 44555677888888889988732 3469999887 3332 23333221 3345677888666
Q ss_pred -EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 311 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 311 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
|||+ +. .....|+++++++...+.+.... ..| .+.+.+.+ +++.|||+- .+...|++++++++.
T Consensus 215 ~ly~t-d~-~~~~~I~~~~~dG~~~~~~~~~~-----l~~---P~glavd~---~~~~lY~aD--~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 215 FMYWT-DW-GTPAKIKKGGLNGVDIYSLVTEN-----IQW---PNGITLDL---LSGRLYWVD--SKLHSISSIDVNGGN 279 (400)
T ss_dssp EEEEE-EC-SSSCCEEEEETTSCSCEEEECSS-----CSC---EEEEEEET---TTTEEEEEE--TTTTEEEEEETTSCC
T ss_pred eEEEE-eC-CCCCEEEEEeCCCCccEEEEECC-----CCc---eEEEEEEe---CCCEEEEEE--CCCCEEEEEeCCCCc
Confidence 6554 43 22357999999887666665321 111 12344432 577888874 345579999999887
Q ss_pred eEeeccC---CcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 390 LSLLDIP---FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 390 ~~~lt~~---~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.+.+... ...-..+..+++.+++.... ...|++++..+|+
T Consensus 280 ~~~~~~~~~~l~~P~gl~v~~~~lywtd~~---~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 280 RKTILEDEKRLAHPFSLAVFEDKVFWTDII---NEAIFSANRLTGS 322 (400)
T ss_dssp CEEEEECSSTTSSEEEEEEETTEEEEEESS---SCSEEEEESSSCC
T ss_pred cEEEEeCCCCCCCCEEEEEeCCEEEEecCC---CCeEEEEEcCCCC
Confidence 7666432 22334555567766665532 2458888865554
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=9e-06 Score=83.07 Aligned_cols=239 Identities=11% Similarity=0.016 Sum_probs=131.4
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
...+|+.+.++.+. .++.|++||+.+ ++..++....+ ....+...+|+|||++|+....+ ..|.+++
T Consensus 29 ~~l~WS~~~~lAvg-~D~tV~iWd~~t--g~~~~~~~~~~-~~~~V~~v~~~~~~~~l~sgs~D---------g~v~iw~ 95 (318)
T 4ggc_A 29 NLVDWSSGNVLAVA-LDNSVYLWSASS--GDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSS---------AEVQLWD 95 (318)
T ss_dssp BCEEECTTSEEEEE-ETTEEEEEETTT--CCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETT---------SEEEEEE
T ss_pred eEEEECCCCEEEEE-eCCEEEEEECCC--CCEEEEEEecC-CCCeEEEEEECCCCCEEEEEECC---------CcEEEee
Confidence 34566655444443 477899999998 66544322110 13456788999999987765543 3566677
Q ss_pred cCCCceEEeeeC------------------------------------------CCeeeeeeeCCCCCeEEEEEecCCCC
Q 004816 228 LNGQNIQVLVSG------------------------------------------SDFYAFPRMDPRGERMAWIEWHHPNM 265 (729)
Q Consensus 228 l~~g~~~~lt~~------------------------------------------~~~~~~~~~SPDG~~la~~~~~~~~~ 265 (729)
+.+++......+ ........|+++|+.|+....
T Consensus 96 ~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----- 170 (318)
T 4ggc_A 96 VQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----- 170 (318)
T ss_dssp TTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-----
T ss_pred cCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec-----
Confidence 766654322111 112234467777776665442
Q ss_pred CCCCcEEEEEEecCCCCee--eeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCc
Q 004816 266 PWDKAELWVGYISENGDVY--KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA 342 (729)
Q Consensus 266 ~~~~~~l~~~d~~~~g~~~--~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~ 342 (729)
...|.++|+. +++.. ......... ..+....|+|++. +++.... .....|.++|...+..........
T Consensus 171 ---d~~i~iwd~~-~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~~~~~~~~~~~~~ 241 (318)
T 4ggc_A 171 ---DNLVNVWPSA-PGEGGWVPLQTFTQHQ----GAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAVDAHS 241 (318)
T ss_dssp ---TSCEEEEESS-CBTTBSCCSEEECCCC----SCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETTTCCEEEEEECSS
T ss_pred ---CcceeEEECC-CCcccccceeeecccC----CceEEEEecCCCCcEEEEEec-CCCCEEEEEeccccccccccccee
Confidence 2337777876 44321 122222332 4456678999887 6655443 334556667877766554443332
Q ss_pred cccCCcccccCcceeeeeecCCCCEEEEEEE-ECCeEEEEEEECCCCce-EeeccCCcceEEe-eeeCCEEEEEEeCCCC
Q 004816 343 EFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVE 419 (729)
Q Consensus 343 ~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~-~~g~~~ly~~d~~~g~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~ 419 (729)
......|.+ +++.++..+. .++. |+++|+.+++. ..+......|..+ ..+++.+++.++.+
T Consensus 242 ~v~~~~~~~------------~~~~~~~~sg~~d~~--i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D-- 305 (318)
T 4ggc_A 242 QVCSILWSP------------HYKELISGHGFAQNQ--LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD-- 305 (318)
T ss_dssp CEEEEEEET------------TTTEEEEEECTTTCC--EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT--
T ss_pred eeeeeeecc------------cccceEEEEEcCCCE--EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC--
Confidence 222223332 5566655442 3454 55557776654 4555556678877 44555566665543
Q ss_pred CceEEEEEcCC
Q 004816 420 PSSVAKVTLDD 430 (729)
Q Consensus 420 ~~~ly~~d~~~ 430 (729)
..+.+.++..
T Consensus 306 -~~v~iWd~~~ 315 (318)
T 4ggc_A 306 -ETLRLWRCFE 315 (318)
T ss_dssp -TEEEEECCSC
T ss_pred -CeEEEEECCC
Confidence 2455555443
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.61 E-value=7e-08 Score=99.66 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=76.8
Q ss_pred CEEEEEcCCCCCC--------ccccc----hhhhHHHhhCCcE---EEEecCCCCCCCchhHHHhhccCCCcccHHHHHH
Q 004816 493 PLLVKSHGGPTSE--------ARGIL----NLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS 557 (729)
Q Consensus 493 P~vv~~hGg~~~~--------~~~~~----~~~~~~la~~G~~---v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~ 557 (729)
+.||++||..... ....| ..+++.|.++||. |+.+|++|.+ .+...... .......+++.+
T Consensus 41 ~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g~G---~S~~~~~~-~~~~~~~~~l~~ 116 (342)
T 2x5x_A 41 TPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSS---EQGSAQYN-YHSSTKYAIIKT 116 (342)
T ss_dssp CCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSCHH---HHTCGGGC-CBCHHHHHHHHH
T ss_pred CeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCCCC---ccCCcccc-CCHHHHHHHHHH
Confidence 3488899975532 23455 6788899999998 9999998643 21100000 011123677888
Q ss_pred HHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C--CCcceEEEEeccccC
Q 004816 558 CATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F--RDTFKAGASLYGVAD 606 (729)
Q Consensus 558 ~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~--~~~~~a~v~~~~~~d 606 (729)
.++.++++. ..+++.|+||||||.+++.++. + |++++++|++++...
T Consensus 117 ~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 117 FIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp HHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCTT
T ss_pred HHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCcc
Confidence 888877653 2468999999999999999987 6 899999999987643
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.60 E-value=7.1e-06 Score=84.35 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=139.8
Q ss_pred EEEEECCCCcEEEEeCCCCCCC--CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSS--PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI- 233 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~--~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~- 233 (729)
|+|.. ...|.++++++ .. ...+... ........|+++++.|+++... ...|++++++++..
T Consensus 7 ll~~~--~~~I~~i~l~~--~~~~~~~~~~~----~~~~~~ld~d~~~~~lyw~D~~--------~~~I~r~~~~g~~~~ 70 (318)
T 3sov_A 7 LLYAN--RRDLRLVDATN--GKENATIVVGG----LEDAAAVDFVFSHGLIYWSDVS--------EEAIKRTEFNKTESV 70 (318)
T ss_dssp EEEEC--EEEEEEEETTC--TTSCCEEEEEE----EEEEEEEEEEGGGTEEEEEETT--------TTEEEEEETTSSSCC
T ss_pred EEEEc--cCeEEEEECCC--CceEEEEEecC----CCccEEEEEEeCCCEEEEEECC--------CCcEEEEEccCCCce
Confidence 56663 45799999986 42 2222222 1234567799988887766432 25799999988742
Q ss_pred -EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-E
Q 004816 234 -QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 311 (729)
Q Consensus 234 -~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l 311 (729)
..+..+.....+.++.+.++.|+|+... ...|.+++++ |... ..+....- .....++..|++. |
T Consensus 71 ~~~~~~~l~~p~glavd~~~g~ly~~d~~-------~~~I~~~~~d--G~~~-~~l~~~~~----~~P~giavdp~~g~l 136 (318)
T 3sov_A 71 QNVVVSGLLSPDGLACDWLGEKLYWTDSE-------TNRIEVSNLD--GSLR-KVLFWQEL----DQPRAIALDPSSGFM 136 (318)
T ss_dssp CEEEEECCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETT--SCSC-EEEECSSC----SSEEEEEEEGGGTEE
T ss_pred EEEEcCCCCCccEEEEEcCCCeEEEEECC-------CCEEEEEECC--CCcE-EEEEeCCC----CCccEEEEeCCCCEE
Confidence 3444454555678898888889888732 3469999987 3321 22332222 3445677887655 5
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
||+ +. .....|+++++++...+.+.... + .| .+.+.+.+ +++.|||+- .+...|++++++++..+
T Consensus 137 y~t-d~-~~~~~I~r~~~dG~~~~~~~~~~--l---~~---Pnglavd~---~~~~lY~aD--~~~~~I~~~d~dG~~~~ 201 (318)
T 3sov_A 137 YWT-DW-GEVPKIERAGMDGSSRFIIINSE--I---YW---PNGLTLDY---EEQKLYWAD--AKLNFIHKSNLDGTNRQ 201 (318)
T ss_dssp EEE-EC-SSSCEEEEEETTSCSCEEEECSS--C---SC---EEEEEEET---TTTEEEEEE--TTTTEEEEEETTSCSCE
T ss_pred EEE-ec-CCCCEEEEEEcCCCCeEEEEECC--C---CC---ccEEEEec---cCCEEEEEE--CCCCEEEEEcCCCCceE
Confidence 554 43 23568999999876655554321 1 11 12344443 578898875 34557999999887766
Q ss_pred eecc-CCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 392 LLDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 392 ~lt~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.+.. ....-..+..+++.+++... ....|++++..+|+.
T Consensus 202 ~~~~~~~~~P~glav~~~~lywtd~---~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 202 AVVKGSLPHPFALTLFEDILYWTDW---STHSILACNKYTGEG 241 (318)
T ss_dssp EEECSCCSCEEEEEEETTEEEEEET---TTTEEEEEETTTCCS
T ss_pred EEecCCCCCceEEEEeCCEEEEEec---CCCeEEEEECCCCCc
Confidence 6544 23334455556666666532 335788888866653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-06 Score=100.04 Aligned_cols=231 Identities=10% Similarity=-0.001 Sum_probs=138.0
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCC-----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSS-----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~-----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
..++++...++.|.+|++... .. .+.+..+ ...+...+|||||+.|+....+ ..|.++|+.
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~-~~~~~~~~~~~~~h----~~~v~~v~~s~~g~~l~sgs~D---------g~v~vwd~~ 460 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKD-DKAYGVAQRRLTGH----SHFVEDVVLSSDGQFALSGSWD---------GELRLWDLA 460 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCS-TTCSCEEEEEEECC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEEccCC-CcccccccceecCC----CCcEEEEEECCCCCEEEEEeCC---------CcEEEEECC
Confidence 357777778889999998751 11 1234443 3456788999999987766543 468999999
Q ss_pred CCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 230 GQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 230 ~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
+++.. .+..........+|||||++|+-.+.+ ..|.++|+. +... ..+..... .....+..+.|+|+
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D--------~~i~iwd~~-~~~~--~~~~~~~~-~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD--------RTIKLWNTL-GECK--YTISEGGE-GHRDWVSCVRFSPN 528 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETT--------SCEEEECTT-SCEE--EEECSSTT-SCSSCEEEEEECSC
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCC--------CEEEEEECC-CCcc--eeeccCCC-CCCCcEEEEEEeCC
Confidence 88654 344445567788999999999866632 337788865 3321 22222111 00034567889999
Q ss_pred Cc--EEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 309 GE--LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 309 G~--l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
+. +++.... .+ .|.++|+.+++..... .....+.. +.|.+ ++ .++++...+|...|| |+
T Consensus 529 ~~~~~l~s~s~-d~--~v~vwd~~~~~~~~~~~~h~~~v~~---------v~~sp---dg-~~l~sg~~Dg~i~iw--d~ 590 (694)
T 3dm0_A 529 TLQPTIVSASW-DK--TVKVWNLSNCKLRSTLAGHTGYVST---------VAVSP---DG-SLCASGGKDGVVLLW--DL 590 (694)
T ss_dssp SSSCEEEEEET-TS--CEEEEETTTCCEEEEECCCSSCEEE---------EEECT---TS-SEEEEEETTSBCEEE--ET
T ss_pred CCcceEEEEeC-CC--eEEEEECCCCcEEEEEcCCCCCEEE---------EEEeC---CC-CEEEEEeCCCeEEEE--EC
Confidence 74 4555444 34 4566688777655433 22222222 33432 44 455666677876666 66
Q ss_pred CCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 386 FGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 386 ~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.+++..........+..+ ..+++.+++.+.. ..+.++|+.+++.
T Consensus 591 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 591 AEGKKLYSLEANSVIHALCFSPNRYWLCAATE----HGIKIWDLESKSI 635 (694)
T ss_dssp TTTEEEECCBCSSCEEEEEECSSSSEEEEEET----TEEEEEETTTTEE
T ss_pred CCCceEEEecCCCcEEEEEEcCCCcEEEEEcC----CCEEEEECCCCCC
Confidence 666543222334456666 4445555554432 2488888887754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.5e-06 Score=102.15 Aligned_cols=243 Identities=13% Similarity=0.037 Sum_probs=139.4
Q ss_pred eEEEECC-EEEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 149 ~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
+..++.+ ..+++...++.|.+|++.+ ++ ...+... ...+...+|||||++|+....+ ..|.++
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~--~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~d---------~~v~vw 684 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAET--GEKLLDIKAH----EDEVLCCAFSSDDSYIATCSAD---------KKVKIW 684 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCC--CCEEEEeccC----CCCEEEEEEecCCCEEEEEeCC---------CeEEEE
Confidence 3444433 3455556778999999987 44 3444433 3557888999999988766543 469999
Q ss_pred EcCCCceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 227 ALNGQNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 227 dl~~g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
|+.+++... +...........|+|+++..+++.... ...|.++|+. +++. ...+.+.. ..+..+.|
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~------d~~v~vwd~~-~~~~--~~~~~~h~----~~v~~~~~ 751 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN------DFFLKLWDLN-QKEC--RNTMFGHT----NSVNHCRF 751 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEET------TSCEEEEETT-SSSE--EEEECCCS----SCEEEEEE
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeC------CCeEEEEECC-Ccch--hheecCCC----CCEEEEEE
Confidence 999887654 344455667789999765433333222 2348999998 6764 44455554 56678899
Q ss_pred CCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCcccc---C--CcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 306 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS---R--PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 306 spDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~---~--~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
+|||+++++... .+ .|.++|+.+++............ . .........+.|.+ +++.++..+ ++ .+
T Consensus 752 sp~~~~l~s~s~-dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---dg~~l~~~~--~~--~v 821 (1249)
T 3sfz_A 752 SPDDELLASCSA-DG--TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA---DGDKIIVAA--KN--KV 821 (1249)
T ss_dssp CSSTTEEEEEES-SS--EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT---TSSEEEEEE--TT--EE
T ss_pred ecCCCEEEEEEC-CC--eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC---CCCEEEEEc--CC--cE
Confidence 999994444443 34 46666777765443221110000 0 00000112334443 666666554 44 45
Q ss_pred EEEECCCCceE-eec-cCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 381 GILDDFGHSLS-LLD-IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 381 y~~d~~~g~~~-~lt-~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
++++..++... .+. .....+..+ ..+++.+++.++.. ..+..+++.++.
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~v~vwd~~~~~ 873 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ---YCVELWNIDSRL 873 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS---SCEEEEETTTTE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCc
Confidence 66677776643 232 234445555 34444455554433 346666766654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-05 Score=87.76 Aligned_cols=244 Identities=10% Similarity=0.007 Sum_probs=131.8
Q ss_pred ECCEEEEEECCCCcEEEEeCCCCCCCCee-cCCCC---CC----CceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDY---GE----PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 153 ~~~~i~~~~~~~~~l~~~d~~~~~~~~~~-lt~~~---~~----~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
++..++..+...+++.++|..+ .+..+ +.... +. +..++.....|+++..+++.... ...|+
T Consensus 254 DGk~l~v~n~~~~~v~ViD~~t--~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~--------~g~v~ 323 (567)
T 1qks_A 254 EDKYAIAGAYWPPQYVIMDGET--LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE--------TGKIL 323 (567)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT--------TTEEE
T ss_pred CCCEEEEEEccCCeEEEEECCC--CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC--------CCeEE
Confidence 4556777777778999999877 54433 22110 00 01245667789988865554432 25799
Q ss_pred EEEcCCCceEEeee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccc-c
Q 004816 225 AIALNGQNIQVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP-T 301 (729)
Q Consensus 225 ~~dl~~g~~~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~-~ 301 (729)
++|....+...++. ...+..+..|+|||++++..... ...|.++|++ ++++.......+.. ... .
T Consensus 324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~-------sn~V~ViD~~-t~kl~~~i~vgg~~----Phpg~ 391 (567)
T 1qks_A 324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA-------RNKLVVIDTK-EGKLVAIEDTGGQT----PHPGR 391 (567)
T ss_dssp EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG-------GTEEEEEETT-TTEEEEEEECSSSS----BCCTT
T ss_pred EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC-------CCeEEEEECC-CCcEEEEEeccCcC----CCCcc
Confidence 99987654322221 22344456899999988766532 3459999998 77753322220221 111 2
Q ss_pred Ccee-CCCCc-EEEEEecCCCceEEEEEEcCCCe-------E-EEeeccCccccCCcccccCcceeeeeecCCCCEEEEE
Q 004816 302 EPKW-SSKGE-LFFVTDRKNGFWNLHKWIESNNE-------V-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 371 (729)
Q Consensus 302 ~~~w-spDG~-l~~~~~~~~g~~~l~~~d~~~g~-------~-~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~ 371 (729)
.+.| .||+. ++++.+. +...|.++|.++++ . +.+. ... ..+.+ +...| +++.+|+.
T Consensus 392 g~~~~~p~~g~v~~t~~~--g~~~Vsvid~~~~~~~~~~~kvv~~i~-~~g--~g~~~------i~~~p---~~~~l~v~ 457 (567)
T 1qks_A 392 GANFVHPTFGPVWATSHM--GDDSVALIGTDPEGHPDNAWKILDSFP-ALG--GGSLF------IKTHP---NSQYLYVD 457 (567)
T ss_dssp CEEEEETTTEEEEEEEBS--SSSEEEEEECCTTTCTTTBTSEEEEEE-CSC--SCCCC------EECCT---TCSEEEEE
T ss_pred ceeeECCCCCcEEEeCCC--CCCeEEEecCCCCCCccccCEEEEEEe-cCC--CCCEE------EEeCC---CCCeEEEe
Confidence 3344 78866 6555544 44568888877622 2 2222 111 11111 11121 66666654
Q ss_pred EEECC-----eEEEEEEECCCC-----c--eEeecc--------CCcceEEe--eeeCCEEEEEEe-CCCCCceEEEEEc
Q 004816 372 YRQNG-----RSYLGILDDFGH-----S--LSLLDI--------PFTDIDNI--TLGNDCLFVEGA-SGVEPSSVAKVTL 428 (729)
Q Consensus 372 s~~~g-----~~~ly~~d~~~g-----~--~~~lt~--------~~~~v~~~--~~~~~~~~~~~~-~~~~~~~ly~~d~ 428 (729)
. +.+ ...|.++|.++. . .+.|.. +...+..+ ..+++.+++..- ..+....|.++|.
T Consensus 458 ~-~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 458 A-TLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp C-TTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred c-CCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 3 222 347888887655 1 133321 11223333 455666665543 3345677999998
Q ss_pred CCCcc
Q 004816 429 DDHKL 433 (729)
Q Consensus 429 ~~~~~ 433 (729)
+++++
T Consensus 537 ~t~~~ 541 (567)
T 1qks_A 537 KTLEL 541 (567)
T ss_dssp TTTEE
T ss_pred CCceE
Confidence 88765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.4e-05 Score=78.44 Aligned_cols=230 Identities=7% Similarity=-0.039 Sum_probs=128.5
Q ss_pred EEEEEECCCCcEEEEeCCCCCC-CCeecCCCCCCCceeeecceecCC--CCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~-~~~~lt~~~~~~~~~~~~~~~SPd--G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
..+++...++.|.+|++.++.. ....+... ...+...+|+|+ |+.|+....+ ..|.++|+.+++
T Consensus 22 ~~las~s~D~~v~iw~~~~~~~~~~~~l~gH----~~~V~~v~~s~~~~g~~l~s~s~D---------~~v~iWd~~~~~ 88 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GKVMIWKEENGR 88 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSSCBCCCEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------TEEEEEEBSSSC
T ss_pred CEEEEEeCCCEEEEEecCCCCcEEEEEEccc----cCCeEEEEecCCCcCCEEEEEcCC---------CEEEEEEcCCCc
Confidence 3455666788899999874101 22344443 345678889874 8876655543 468888998774
Q ss_pred e---EEeeeCCCeeeeeeeCCC--CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 233 I---QVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 233 ~---~~lt~~~~~~~~~~~SPD--G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
. ..+..........+|+|| |+.|+..+. ...|.++|+. ++.......+.+.. ..+..+.|+|
T Consensus 89 ~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~--------d~~v~~wd~~-~~~~~~~~~~~~h~----~~v~~~~~~p 155 (297)
T 2pm7_B 89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS--------DGKVSVVEFK-ENGTTSPIIIDAHA----IGVNSASWAP 155 (297)
T ss_dssp BCCCEEECCCSSCEEEEEECCGGGCSEEEEEET--------TSEEEEEEBC-SSSCBCCEEEECCS----SCEEEEEECC
T ss_pred eEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC--------CCcEEEEEec-CCCceeeeeeeccc----CccceEeecC
Confidence 3 233333455678899998 888876652 3458888987 44322233444544 5566788999
Q ss_pred C-------------CcEEEEEecCCCceEEEEEEcCCCe--E---EEeeccCccccCCcccccCcceeeeeecCCC--CE
Q 004816 308 K-------------GELFFVTDRKNGFWNLHKWIESNNE--V---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEK--NL 367 (729)
Q Consensus 308 D-------------G~l~~~~~~~~g~~~l~~~d~~~g~--~---~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~--~~ 367 (729)
+ +++++.... .+.-.|| |..+++ . ..+......+.. +.|.| ++ +.
T Consensus 156 ~~~~~~~~~~~~~~~~~l~sgs~-D~~v~lw--d~~~~~~~~~~~~~l~~H~~~V~~---------v~~sp---~~~~~~ 220 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVTGGA-DNLVKIW--KYNSDAQTYVLESTLEGHSDWVRD---------VAWSP---TVLLRS 220 (297)
T ss_dssp CC------------CCEEEEEET-TSCEEEE--EEETTTTEEEEEEEECCCSSCEEE---------EEECC---CCSSSE
T ss_pred CcccccccCCCCCCcceEEEEcC-CCcEEEE--EEcCCCceEEEEEEecCCCCceEE---------EEECC---CCCCce
Confidence 7 354555544 4555555 444433 1 122222222222 33432 43 46
Q ss_pred EEEEEEECCeEEEEEEECCCCce--Eeec--cCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEE
Q 004816 368 IACSYRQNGRSYLGILDDFGHSL--SLLD--IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 368 l~~~s~~~g~~~ly~~d~~~g~~--~~lt--~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
++.+...++...||-++...+.. +.+. .....+..+ ..+++.+++.++. +..-.+|..+
T Consensus 221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~-D~~v~lw~~~ 284 (297)
T 2pm7_B 221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 284 (297)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET-TSCEEEEEEC
T ss_pred EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC-CCcEEEEEEC
Confidence 77777888988888765432222 2231 223345555 4445555555543 3333455544
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.9e-06 Score=84.75 Aligned_cols=196 Identities=9% Similarity=-0.017 Sum_probs=111.8
Q ss_pred eEEEECC-EEEEEECCCCcEEEEeCCCCCCCCee---cCCCCCCCceeeecceecC--CCCEEEEEEeccCCCCCCcceE
Q 004816 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLP---ITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 149 ~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~---lt~~~~~~~~~~~~~~~SP--dG~~l~~~~~~~~~~~~~~~~~ 222 (729)
+..++.+ .++++...++.|.+|++.++....+. +... ...+...+|+| ||+.|+....+ ..
T Consensus 16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~d~~~l~s~~~d---------g~ 82 (351)
T 3f3f_A 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH----DSSIVAIDWASPEYGRIIASASYD---------KT 82 (351)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC----SSCEEEEEECCGGGCSEEEEEETT---------SC
T ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC----CCcEEEEEEcCCCCCCEEEEEcCC---------Ce
Confidence 3444322 34556667888999998862011122 2222 34567889999 69987766553 35
Q ss_pred EEEEEcCCCc----------eEEeeeCCCeeeeeeeCCC--CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeee-eEE-
Q 004816 223 IVAIALNGQN----------IQVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVC- 288 (729)
Q Consensus 223 l~~~dl~~g~----------~~~lt~~~~~~~~~~~SPD--G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~-~~~- 288 (729)
|.++|+.+++ ...+...........|+|| |+.|+... ....|.++|+. +++... ...
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~dg~v~iwd~~-~~~~~~~~~~~ 153 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG--------NDGILRLYDAL-EPSDLRSWTLT 153 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--------TTCEEEEEECS-STTCTTCCEEE
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec--------CCCcEEEecCC-ChHHhcccccc
Confidence 8888888753 2233334556778899999 99888766 23459999987 454211 111
Q ss_pred -----ec----CCCCCccccccCceeCCC---CcEEEEEecCCCceEEEEEEcCCCeEEEeec---cCccccCCcccccC
Q 004816 289 -----VA----GFDPTIVESPTEPKWSSK---GELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGI 353 (729)
Q Consensus 289 -----~~----~~~~~~~~~~~~~~wspD---G~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~ 353 (729)
.. ... ..+..+.|+|+ +++++.... .+ .+...+...++...+.. ....+.
T Consensus 154 ~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~h~~~i~-------- 218 (351)
T 3f3f_A 154 SEMKVLSIPPANHL----QSDFCLSWCPSRFSPEKLAVSAL-EQ--AIIYQRGKDGKLHVAAKLPGHKSLIR-------- 218 (351)
T ss_dssp EEEESCSCCCSSCS----CCCEEEEECCCSSSCCEEEEEET-TE--EEEEEECTTSCEEEEEECCCCCSCEE--------
T ss_pred ccccccccccCCcc----cceeEEEeccCCCCCcEEEEecC-CC--cEEEEccCCCceeeeeecCCCCccee--------
Confidence 00 111 34566789997 665444444 23 23334445555433332 222222
Q ss_pred cceeeeeecCCCC---EEEEEEEECCeEEEEEEEC
Q 004816 354 NSYEIIQSHGEKN---LIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 354 ~~~~~l~~~~~~~---~l~~~s~~~g~~~ly~~d~ 385 (729)
.+.|.+ ++. .++++...+|...||-+..
T Consensus 219 -~~~~~p---~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 219 -SISWAP---SIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp -EEEECC---CSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred -EEEECC---CCCCcceEEEEEcCCCeEEEEeCCC
Confidence 233432 331 6777778888888887653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=95.24 Aligned_cols=187 Identities=13% Similarity=0.067 Sum_probs=109.5
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC-----eeeeeeeCCCCCeEEEEEecCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD-----FYAFPRMDPRGERMAWIEWHHPNM 265 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~-----~~~~~~~SPDG~~la~~~~~~~~~ 265 (729)
..+...+|||||++|+....+ ..+.+++.++ ....+. ... .+...+|||||+.||..+
T Consensus 86 ~~V~~vawSPdG~~LAs~s~d---------g~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs------ 148 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNN---------GNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN------ 148 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETT---------SCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE------
T ss_pred CcEEEEEECCCCCEEEEEeCC---------CcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEc------
Confidence 456888999999998877654 3477788654 233333 222 366789999999998776
Q ss_pred CCCCcEEEEEEecCCCCee-----eeEEe----cCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE-
Q 004816 266 PWDKAELWVGYISENGDVY-----KRVCV----AGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL- 335 (729)
Q Consensus 266 ~~~~~~l~~~d~~~~g~~~-----~~~~~----~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~- 335 (729)
....|.++|+. ++... ....+ .++. ..+..++|+||| ++..+.+ ..+.++|+++++..
T Consensus 149 --~DGtVkIWd~~-~~~l~~~~~i~l~ti~~~~~gh~----~~V~sVawSPdg-Laass~D----~tVrlWd~~~~~~~~ 216 (588)
T 2j04_A 149 --EDGELQFFSIR-KNSENTPEFYFESSIRLSDAGSK----DWVTHIVWYEDV-LVAALSN----NSVFSMTVSASSHQP 216 (588)
T ss_dssp --TTSEEEEEECC-CCTTTCCCCEEEEEEECSCTTCC----CCEEEEEEETTE-EEEEETT----CCEEEECCCSSSSCC
T ss_pred --CCCEEEEEECC-CCccccccceeeeeeeccccccc----ccEEEEEEcCCc-EEEEeCC----CeEEEEECCCCcccc
Confidence 34568899988 56421 12333 3333 456778999999 5544432 44666677776532
Q ss_pred ---Eeec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec-cCCcceEEe-e--eeC
Q 004816 336 ---AIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD-IPFTDIDNI-T--LGN 407 (729)
Q Consensus 336 ---~l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt-~~~~~v~~~-~--~~~ 407 (729)
.+.. ....+. ++.|. + +.++.++ ++ .|.+++.++++...+. .....+.++ . .++
T Consensus 217 ~~~tL~~~h~~~V~---------svaFs----g-~~LASa~--~~--tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d 278 (588)
T 2j04_A 217 VSRMIQNASRRKIT---------DLKIV----D-YKVVLTC--PG--YVHKIDLKNYSISSLKTGSLENFHIIPLNHEKE 278 (588)
T ss_dssp CEEEEECCCSSCCC---------CEEEE----T-TEEEEEC--SS--EEEEEETTTTEEEEEECSCCSCCCEEEETTCSS
T ss_pred ceeeecccccCcEE---------EEEEE----C-CEEEEEe--CC--eEEEEECCCCeEEEEEcCCCceEEEEEeeeCCC
Confidence 2321 111222 33442 2 4444333 44 5666688888875554 334455555 4 555
Q ss_pred CEEEEEEeCCCCCceEEEE
Q 004816 408 DCLFVEGASGVEPSSVAKV 426 (729)
Q Consensus 408 ~~~~~~~~~~~~~~~ly~~ 426 (729)
+..+..+...+. .+|.+
T Consensus 279 ~~~La~a~edG~--klw~~ 295 (588)
T 2j04_A 279 STILLMSNKTSY--KVLLE 295 (588)
T ss_dssp CEEEEECSSCEE--EEEES
T ss_pred CCEEEEEcCCCC--EEEee
Confidence 555555543333 56664
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-08 Score=110.40 Aligned_cols=127 Identities=20% Similarity=0.218 Sum_probs=81.9
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc-chhhhHHHhhC-CcEEEEecCCCCC-CCchhHHHhhccCC
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSR-GWAFVDVNYGGST-GYGREFRERLLGRW 547 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~-~~~~~~~la~~-G~~v~~~d~rGs~-g~g~~~~~~~~~~~ 547 (729)
.+...+|.|...... ...++.|+||++|||+....... +.. ..|+++ |+.|+.+|||... |+..... ....
T Consensus 111 cL~l~v~~P~~~~~~-~~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~la~~~~~vvv~~~YRl~~~Gfl~~~~---~~~~ 184 (574)
T 3bix_A 111 CLYLNIYVPTEDDIR-DSGGPKPVMVYIHGGSYMEGTGNLYDG--SVLASYGNVIVITVNYRLGVLGFLSTGD---QAAK 184 (574)
T ss_dssp CCEEEEEEEC---------CCEEEEEECCCSSSSSCCGGGSCC--HHHHHHHTCEEEEECCCCHHHHHCCCSS---SSCC
T ss_pred CCEEEEEECCCCCcC-CCCCCCcEEEEECCCcccCCCCCccCc--hhhhccCCEEEEEeCCcCcccccCcCCC---CCCC
Confidence 355566777652100 01346799999999865433322 322 456665 6999999999532 1110000 0011
Q ss_pred CcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh-C--C-CcceEEEEecc
Q 004816 548 GIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F--R-DTFKAGASLYG 603 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~--~-~~~~a~v~~~~ 603 (729)
+...+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++. . . ..|+++|+.+|
T Consensus 185 ~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg 247 (574)
T 3bix_A 185 GNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSG 247 (574)
T ss_dssp CCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcC
Confidence 223489999999999885 3468999999999999999988876 2 2 57999999886
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-05 Score=85.10 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=104.3
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCC--CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~--~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
|.+.++.|+|++...+.|+++++++.. ...+.+.... .......++++.++.|+++... ...|.+++
T Consensus 119 ~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~---~~~p~glavD~~~~~lY~~d~~--------~~~I~~~~ 187 (400)
T 3p5b_L 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWTDSV--------LGTVSVAD 187 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS---CSCEEEEEEETTTTEEEEEETT--------TTEEEEEC
T ss_pred eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC---CCCcccEEEEecCCceEEEECC--------CCeEEEEe
Confidence 333367899998888899999997510 0123332211 1234567888878877666432 25799999
Q ss_pred cCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 228 LNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 228 l~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
++++..+.+.. +...-.+.+..|.+.+|+|+.+.. ...|++++++ |... ..+....- .....++++
T Consensus 188 ~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~------~~~I~~~~~d--G~~~-~~~~~~~l----~~P~glavd 254 (400)
T 3p5b_L 188 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLN--GVDI-YSLVTENI----QWPNGITLD 254 (400)
T ss_dssp TTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS------SCCEEEEETT--SCSC-EEEECSSC----SCEEEEEEE
T ss_pred CCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC------CCEEEEEeCC--CCcc-EEEEECCC----CceEEEEEE
Confidence 99877766654 334456678999989999987543 2359999987 3321 22333221 345678899
Q ss_pred CCCc-EEEEEecCCCceEEEEEEcCCCeEEEeec
Q 004816 307 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS 339 (729)
Q Consensus 307 pDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~ 339 (729)
++++ |||. +. +...|+++|++++..+.+..
T Consensus 255 ~~~~~lY~a-D~--~~~~I~~~d~dG~~~~~~~~ 285 (400)
T 3p5b_L 255 LLSGRLYWV-DS--KLHSISSIDVNGGNRKTILE 285 (400)
T ss_dssp TTTTEEEEE-ET--TTTEEEEEETTSCCCEEEEE
T ss_pred eCCCEEEEE-EC--CCCEEEEEeCCCCccEEEEe
Confidence 8877 6655 43 45689999998876666653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-05 Score=83.00 Aligned_cols=189 Identities=10% Similarity=-0.009 Sum_probs=110.1
Q ss_pred CCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecC--CCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-
Q 004816 164 DQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG- 239 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SP--dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~- 239 (729)
++.+.++++.+ ++ .+.+.... ...+....|+| +|+.++....+ ..|.++|+.+++...+...
T Consensus 103 ~~~~~~~~~~~--~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~~ 168 (343)
T 3lrv_A 103 GNQITILDSKT--NKVLREIEVDS---ANEIIYMYGHNEVNTEYFIWADNR---------GTIGFQSYEDDSQYIVHSAK 168 (343)
T ss_dssp TTEEEEEETTT--CCEEEEEECCC---SSCEEEEECCC---CCEEEEEETT---------CCEEEEESSSSCEEEEECCC
T ss_pred cCceEEeecCC--cceeEEeecCC---CCCEEEEEcCCCCCCCEEEEEeCC---------CcEEEEECCCCcEEEEEecC
Confidence 44566666665 44 23333221 23467888999 99987766543 4588999998887554422
Q ss_pred -CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecC-CCCCccccccCceeCCCCcEEEEEec
Q 004816 240 -SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDPTIVESPTEPKWSSKGELFFVTDR 317 (729)
Q Consensus 240 -~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~-~~~~~~~~~~~~~wspDG~l~~~~~~ 317 (729)
.......+|+|||+.|+..+ ....|.++|+. +++.. ...+.. .. ..+..+.|+|||++++....
T Consensus 169 ~~~~i~~~~~~pdg~~lasg~--------~dg~i~iwd~~-~~~~~-~~~~~~~h~----~~v~~l~fs~~g~~l~s~~~ 234 (343)
T 3lrv_A 169 SDVEYSSGVLHKDSLLLALYS--------PDGILDVYNLS-SPDQA-SSRFPVDEE----AKIKEVKFADNGYWMVVECD 234 (343)
T ss_dssp SSCCCCEEEECTTSCEEEEEC--------TTSCEEEEESS-CTTSC-CEECCCCTT----SCEEEEEECTTSSEEEEEES
T ss_pred CCCceEEEEECCCCCEEEEEc--------CCCEEEEEECC-CCCCC-ccEEeccCC----CCEEEEEEeCCCCEEEEEeC
Confidence 23466789999999887554 22349999998 66542 133444 44 56778899999994444444
Q ss_pred CCCceEEEEEEcCCCeEEE-eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 318 KNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 318 ~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
+ .|.++|+.+++... +..... .........+.|.+ +++.|+..+..++..+||.++...+.+.
T Consensus 235 --~--~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~g~~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 235 --Q--TVVCFDLRKDVGTLAYPTYTI----PEFKTGTVTYDIDD---SGKNMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp --S--BEEEEETTSSTTCBSSCCCBC---------CCEEEEECT---TSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred --C--eEEEEEcCCCCcceeeccccc----ccccccceEEEECC---CCCEEEEecCCCCcEEEEEEcccccceE
Confidence 3 67788887764322 211000 00000001244543 5555554433378888888765555444
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.53 E-value=4.8e-06 Score=86.93 Aligned_cols=151 Identities=9% Similarity=0.061 Sum_probs=95.1
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCC-CCCceeeecceecCC----CCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPR----FNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~SPd----G~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
+..++....++.|.+|++.++ ...+.+.... ......+...+|+|+ |+.|+....+ ..|.++|+.
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---------g~i~v~d~~ 103 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR---------GIIRIINPI 103 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT---------CEEEEECTT
T ss_pred CceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC---------CEEEEEEch
Confidence 444555555668999998862 3333333210 001244678889999 5555544432 479999999
Q ss_pred CCceEEeee-CCCeeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEe---cCCCCCccccccCce
Q 004816 230 GQNIQVLVS-GSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV---AGFDPTIVESPTEPK 304 (729)
Q Consensus 230 ~g~~~~lt~-~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~---~~~~~~~~~~~~~~~ 304 (729)
+++...... ........+|+| |++.|+..+. ...|.++|+. +++. ...+ .... ..+..+.
T Consensus 104 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~--------dg~i~iwd~~-~~~~--~~~~~~~~~~~----~~v~~~~ 168 (366)
T 3k26_A 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK--------DHALRLWNIQ-TDTL--VAIFGGVEGHR----DEVLSAD 168 (366)
T ss_dssp TCCEEEEEESCCSCEEEEEECSSCTTEEEEEET--------TSCEEEEETT-TTEE--EEEECSTTSCS----SCEEEEE
T ss_pred hceEeeeecCCCCcEEEEEECCCCCCEEEEEeC--------CCeEEEEEee-cCeE--EEEeccccccc----CceeEEE
Confidence 887654433 455677889999 8888876652 2349999998 6654 3344 3343 5667889
Q ss_pred eCCCCcEEEEEecCCCceEEEEEEcCCCe
Q 004816 305 WSSKGELFFVTDRKNGFWNLHKWIESNNE 333 (729)
Q Consensus 305 wspDG~l~~~~~~~~g~~~l~~~d~~~g~ 333 (729)
|+|||++++.... .+ .|.++|+.+++
T Consensus 169 ~~~~~~~l~~~~~-dg--~i~i~d~~~~~ 194 (366)
T 3k26_A 169 YDLLGEKIMSCGM-DH--SLKLWRINSKR 194 (366)
T ss_dssp ECTTSSEEEEEET-TS--CEEEEESCSHH
T ss_pred ECCCCCEEEEecC-CC--CEEEEECCCCc
Confidence 9999994444444 34 46666776654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.5e-06 Score=92.18 Aligned_cols=148 Identities=8% Similarity=0.064 Sum_probs=85.7
Q ss_pred EEEEEECCCCcEEEEeCCCCCCC------------CeecCCCCCCCc----------eeeecceecCCC--CEEEEEEec
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSS------------PLPITPDYGEPL----------VSYADGIFDPRF--NRYVTVRED 211 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~------------~~~lt~~~~~~~----------~~~~~~~~SPdG--~~l~~~~~~ 211 (729)
.++++...++.|.+|++.+ +. ...+.... .. ..+...+|+|++ ..|+....+
T Consensus 41 ~~la~g~~dg~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~h~--~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d 116 (447)
T 3dw8_B 41 ELLATGDKGGRVVIFQQEQ--ENKIQSHSRGEYNVYSTFQSHE--PEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND 116 (447)
T ss_dssp SEEEEEETTSEEEEEEECC-------CCCCCCEEEEEEEECCC--CEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEecC--CCCCCcccccceeEeccccccc--ccccccccccccCceEEEEEcCCCCcceEEEeCCC
Confidence 3445555678899999886 43 22233220 00 336778999998 666665443
Q ss_pred cCCCCCCcceEEEEEEcCCCceE----------------------------------------Ee-eeCCCeeeeeeeCC
Q 004816 212 RRQDALNSTTEIVAIALNGQNIQ----------------------------------------VL-VSGSDFYAFPRMDP 250 (729)
Q Consensus 212 ~~~~~~~~~~~l~~~dl~~g~~~----------------------------------------~l-t~~~~~~~~~~~SP 250 (729)
..|.++++.+++.. .+ ..........+|+|
T Consensus 117 ---------~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 117 ---------KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp ---------SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ---------CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 24666666543221 11 12234456789999
Q ss_pred CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE-------ecCCCCCccccccCceeCCCC-cEEEEEecCCCce
Q 004816 251 RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-------VAGFDPTIVESPTEPKWSSKG-ELFFVTDRKNGFW 322 (729)
Q Consensus 251 DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~wspDG-~l~~~~~~~~g~~ 322 (729)
||+.|+.. . ...|.++|+. .+.. .... +.+.. ..+..+.|+||| ++++.... .+
T Consensus 188 ~~~~l~s~--~-------d~~i~iwd~~-~~~~-~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~s~~~-dg-- 249 (447)
T 3dw8_B 188 DYETYLSA--D-------DLRINLWHLE-ITDR-SFNIVDIKPANMEELT----EVITAAEFHPNSCNTFVYSSS-KG-- 249 (447)
T ss_dssp TSSEEEEE--C-------SSEEEEEETT-EEEE-EEEEEECCCSSGGGCC----CCEEEEEECSSCTTEEEEEET-TS--
T ss_pred CCCEEEEe--C-------CCeEEEEECC-CCCc-eeeeeecccccccccC----cceEEEEECCCCCcEEEEEeC-CC--
Confidence 99988753 2 2348888887 2221 1221 22333 456778999999 66555554 34
Q ss_pred EEEEEEcCCCeE
Q 004816 323 NLHKWIESNNEV 334 (729)
Q Consensus 323 ~l~~~d~~~g~~ 334 (729)
.|.++|+.+++.
T Consensus 250 ~i~iwd~~~~~~ 261 (447)
T 3dw8_B 250 TIRLCDMRASAL 261 (447)
T ss_dssp CEEEEETTTCSS
T ss_pred eEEEEECcCCcc
Confidence 466678777663
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-05 Score=82.71 Aligned_cols=200 Identities=11% Similarity=-0.009 Sum_probs=115.6
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC---CEEEEEECCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~ 164 (729)
..+..+.|+| ++.++- .. .+|...+|..... .....+... -..+.....+..++. +.++++...+
T Consensus 12 ~~v~~~~~~~~~~~l~~-~~---~dg~i~iw~~~~~--~~~~~~~~~-----~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVAT-CS---SDQHIKVFKLDKD--TSNWELSDS-----WRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp SCEEEEEECSSSSEEEE-EE---TTSEEEEEEECSS--SCCEEEEEE-----EECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cceeEEEEcCCCCEEEE-ee---CCCeEEEEECCCC--CCcceecce-----eccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 3567899999 554443 33 4678888877544 111111100 000122234445543 4566666678
Q ss_pred CcEEEEeCCCCCCC----------CeecCCCCCCCceeeecceecCC--CCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 165 QRLYKHSIDSKDSS----------PLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 165 ~~l~~~d~~~~~~~----------~~~lt~~~~~~~~~~~~~~~SPd--G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
+.|.+|++.+ +. ...+... ...+...+|+|+ |+.|+....+ ..|.++|+.+++
T Consensus 81 g~v~vwd~~~--~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iwd~~~~~ 145 (351)
T 3f3f_A 81 KTVKLWEEDP--DQEECSGRRWNKLCTLNDS----KGSLYSVKFAPAHLGLKLACLGND---------GILRLYDALEPS 145 (351)
T ss_dssp SCEEEEEECT--TSCTTSSCSEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------CEEEEEECSSTT
T ss_pred CeEEEEecCC--CcccccccCcceeeeeccc----CCceeEEEEcCCCCCcEEEEecCC---------CcEEEecCCChH
Confidence 8899999986 42 1222222 345678899999 9987766543 468899988765
Q ss_pred eEE-ee-------------eCCCeeeeeeeCCC---CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCC
Q 004816 233 IQV-LV-------------SGSDFYAFPRMDPR---GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 295 (729)
Q Consensus 233 ~~~-lt-------------~~~~~~~~~~~SPD---G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~ 295 (729)
... +. ..........|+|+ ++.|+.... ...+...+.. ++.......+.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~h~-- 214 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL--------EQAIIYQRGK-DGKLHVAAKLPGHK-- 214 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET--------TEEEEEEECT-TSCEEEEEECCCCC--
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC--------CCcEEEEccC-CCceeeeeecCCCC--
Confidence 211 11 11233456789998 887776652 2234444444 45543344455554
Q ss_pred ccccccCceeCCCC----cEEEEEecCCCceEEEEEE
Q 004816 296 IVESPTEPKWSSKG----ELFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 296 ~~~~~~~~~wspDG----~l~~~~~~~~g~~~l~~~d 328 (729)
..+..+.|+|+| ++++.... .+.-.+|-+.
T Consensus 215 --~~i~~~~~~p~~~~~~~~l~s~~~-dg~i~iwd~~ 248 (351)
T 3f3f_A 215 --SLIRSISWAPSIGRWYQLIATGCK-DGRIRIFKIT 248 (351)
T ss_dssp --SCEEEEEECCCSSCSSEEEEEEET-TSCEEEEEEE
T ss_pred --cceeEEEECCCCCCcceEEEEEcC-CCeEEEEeCC
Confidence 566788999998 65555554 4655555443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-05 Score=83.23 Aligned_cols=205 Identities=11% Similarity=0.033 Sum_probs=115.3
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
++.|++.+.....|+++++++ +....+.... .... ++|+|+|+.|+.+.... ...|++++.+++..
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~--g~~~~~~~~~----~~~~-ia~~~~g~~l~~~d~~~-------~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDD--NKVTTVHPGF----KGGK-PAVTKDKQRVYSIGWEG-------THTVYVYMKASGWA 206 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTT--TEEEEEEETC----CBCB-CEECTTSSEEEEEBSST-------TCEEEEEEGGGTTC
T ss_pred CCCEEEEecCCCcEEEEECCC--CEEEEeeccC----CCCc-eeEecCCCcEEEEecCC-------CceEEEEEcCCCce
Confidence 346777776667999999987 6665554331 1223 88999999766554322 13799999987654
Q ss_pred -EEe----eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE--ecCCCCCcccccc-Ccee
Q 004816 234 -QVL----VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC--VAGFDPTIVESPT-EPKW 305 (729)
Q Consensus 234 -~~l----t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~--~~~~~~~~~~~~~-~~~w 305 (729)
+.+ ........+.+++|++..|++.. . ...|+++|.+ ++....... ..+.. . .... .++|
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d--~------~~~I~~~d~~-~~~~~~~~~~~~~g~~-~--~~P~~~ia~ 274 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVD--S------NKNFGRFNVK-TQEVTLIKQLELSGSL-G--TNPGPYLIY 274 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEEC--T------TCEEEEEETT-TCCEEEEEECCCCSCC-C--CSSCCEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEE--C------CCcEEEEECC-CCCEEEEecccccCCC-C--CCccccEEE
Confidence 334 11233445679999777787732 2 2469999987 555311100 11111 0 1112 7889
Q ss_pred CCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccC--ccccC-C---cccccCcceeeeeecCCCCEEEEEEEEC-Ce
Q 004816 306 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSR-P---LWVFGINSYEIIQSHGEKNLIACSYRQN-GR 377 (729)
Q Consensus 306 spDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~--~~~~~-~---~w~~~~~~~~~l~~~~~~~~l~~~s~~~-g~ 377 (729)
+|++. ||+. +. +...|+++++++. ...+.... ..... + .-......+.+.+ ++ .||++. . +.
T Consensus 275 ~p~~g~lyv~-d~--~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~---dG-~lyvad--~~~~ 344 (409)
T 3hrp_A 275 YFVDSNFYMS-DQ--NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE---DG-NFYIVD--GFKG 344 (409)
T ss_dssp ETTTTEEEEE-ET--TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT---TC-CEEEEE--TTTT
T ss_pred eCCCCEEEEE-eC--CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC---CC-CEEEEe--CCCC
Confidence 99655 5544 43 4467999998765 33333211 00000 0 0001123445542 44 466553 3 55
Q ss_pred EEEEEEECCCCceEeec
Q 004816 378 SYLGILDDFGHSLSLLD 394 (729)
Q Consensus 378 ~~ly~~d~~~g~~~~lt 394 (729)
..|.++++.+|.+..+.
T Consensus 345 ~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 345 YCLRKLDILDGYVSTVA 361 (409)
T ss_dssp CEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEe
Confidence 67888886677766554
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-07 Score=99.64 Aligned_cols=172 Identities=14% Similarity=0.067 Sum_probs=107.0
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCc---EEEEecCCCCCCC----------chh--HHH-------------h
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGW---AFVDVNYGGSTGY----------GRE--FRE-------------R 542 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~---~v~~~d~rGs~g~----------g~~--~~~-------------~ 542 (729)
..|.||++||...+ ...|..++..|+++|| .|+++|++|.+.+ |.. ... .
T Consensus 21 ~~ppVVLlHG~g~s--~~~w~~la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~l~~v 98 (484)
T 2zyr_A 21 DFRPVVFVHGLAGS--AGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDKI 98 (484)
T ss_dssp CCCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHHHHHH
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHHHHHcCCCcceEEEEECCCCCcccccccccccccccccccccccccccccccccc
Confidence 45679999998443 4567788899999999 6999999964421 000 000 0
Q ss_pred hcc---CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CC---CcceEEEEeccccChhHHhhhcc
Q 004816 543 LLG---RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVADLSMLRAETH 615 (729)
Q Consensus 543 ~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~---~~~~a~v~~~~~~d~~~~~~~~~ 615 (729)
... .......+++.+.++.++++. +.+++.++||||||.+++.++. +| ++++++|++++..+..
T Consensus 99 ~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~~d------- 169 (484)
T 2zyr_A 99 LSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVD------- 169 (484)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCSEE-------
T ss_pred ccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccccc-------
Confidence 000 000123567777777777653 3378999999999999999988 76 4899999999876511
Q ss_pred hhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCC---CChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC
Q 004816 616 KFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKV---VPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692 (729)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~---vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 692 (729)
. ....++|-+.|..|.. ..+.. .|+. ..+.+++++.+|....
T Consensus 170 -------------------~-------p~g~~~L~ilG~~d~~p~V~~pss------~L~~---ga~~v~i~~a~H~~ll 214 (484)
T 2zyr_A 170 -------------------A-------PEGIPTLAVFGNPKALPALGLPEE------KVVY---NATNVYFNNMTHVQLC 214 (484)
T ss_dssp -------------------C-------CTTSCEEEEEECGGGSCCSSCCSS------CCEE---TSEEEEETTCCHHHHH
T ss_pred -------------------c-------CcCCHHHHHhCCCCcCCcccChhH------hcCC---CceEEEECCCCccccc
Confidence 0 0134566666655431 10100 1110 2256678999997432
Q ss_pred cccHHHHHHHHHHHHHHH
Q 004816 693 AENIKFTLEQQMVFFARV 710 (729)
Q Consensus 693 ~~~~~~~~~~~~~fl~~~ 710 (729)
.+ .+..+.+++||...
T Consensus 215 -~d-p~v~~~Vl~fL~~~ 230 (484)
T 2zyr_A 215 -TS-PETFAVMFEFINGY 230 (484)
T ss_dssp -HC-HHHHHHHHHHHHSS
T ss_pred -cC-HHHHHHHHHHhccc
Confidence 12 34556688888753
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=9.2e-06 Score=82.69 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=134.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
..+..+.|+| ++.++... .++...+|.......++....+.. +......+.++++. +++...++.|
T Consensus 60 ~~v~~~~~~~~~~~l~~~~----~dg~i~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~-l~~~~~d~~i 126 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGG----KDTMINGVPLFATSGEDPLYTLIG--------HQGNVCSLSFQDGV-VISGSWDKTA 126 (313)
T ss_dssp SCEEEEEEETTTTEEEEEE----TTSCEEEEETTCCTTSCC-CEECC--------CSSCEEEEEEETTE-EEEEETTSEE
T ss_pred ccEEEEEECCCCCEEEEec----CCCeEEEEEeeecCCCCcccchhh--------cccCEEEEEecCCE-EEEEeCCCCE
Confidence 3567889999 55554433 356767777654311111111111 12233456666654 4455567889
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecC-CCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAF 245 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SP-dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~ 245 (729)
.+|+. . .....+... ...+....|+| +++.++....+ ..|.++|.. .....+.. .......
T Consensus 127 ~~~d~-~--~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~-~~~~~~~~~~~~~i~~ 189 (313)
T 3odt_A 127 KVWKE-G--SLVYNLQAH----NASVWDAKVVSFSENKFLTASAD---------KTIKLWQND-KVIKTFSGIHNDVVRH 189 (313)
T ss_dssp EEEET-T--EEEEEEECC----SSCEEEEEEEETTTTEEEEEETT---------SCEEEEETT-EEEEEECSSCSSCEEE
T ss_pred EEEcC-C--cEEEecccC----CCceeEEEEccCCCCEEEEEECC---------CCEEEEecC-ceEEEEeccCcccEEE
Confidence 99993 2 333444433 24456677877 88887666543 357888842 22333333 4456677
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 325 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~ 325 (729)
..|+|||+ |+... ....|.++|+. +++. ...+.... ..+..+.|+|||+++.... . ..|.
T Consensus 190 ~~~~~~~~-~~~~~--------~dg~i~i~d~~-~~~~--~~~~~~~~----~~i~~~~~~~~~~l~~~~~--d--g~v~ 249 (313)
T 3odt_A 190 LAVVDDGH-FISCS--------NDGLIKLVDMH-TGDV--LRTYEGHE----SFVYCIKLLPNGDIVSCGE--D--RTVR 249 (313)
T ss_dssp EEEEETTE-EEEEE--------TTSEEEEEETT-TCCE--EEEEECCS----SCEEEEEECTTSCEEEEET--T--SEEE
T ss_pred EEEcCCCe-EEEcc--------CCCeEEEEECC-chhh--hhhhhcCC----ceEEEEEEecCCCEEEEec--C--CEEE
Confidence 89999998 55444 23459999998 6664 44455554 5667889999997443332 2 3577
Q ss_pred EEEcCCCeEEEeec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 326 KWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 326 ~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
++|+.+++...... ....+....|.+ ++. + ++...+|...|| ++++++
T Consensus 250 iwd~~~~~~~~~~~~~~~~i~~~~~~~------------~~~-~-~~~~~dg~i~iw--~~~~~~ 298 (313)
T 3odt_A 250 IWSKENGSLKQVITLPAISIWSVDCMS------------NGD-I-IVGSSDNLVRIF--SQEKSR 298 (313)
T ss_dssp EECTTTCCEEEEEECSSSCEEEEEECT------------TSC-E-EEEETTSCEEEE--ESCGGG
T ss_pred EEECCCCceeEEEeccCceEEEEEEcc------------CCC-E-EEEeCCCcEEEE--eCCCCc
Confidence 77888876554442 222222233332 554 3 345667765555 555544
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.7e-06 Score=88.64 Aligned_cols=187 Identities=10% Similarity=-0.019 Sum_probs=112.2
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCC-CCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG-EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~-~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
.|+++|..|+.. ..++.+.+|+.+ +....+. +.. -+...+..++|||||+.|+...++ ..|-+++
T Consensus 92 awSPdG~~LAs~-s~dg~V~iwd~~---~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D---------GtVkIWd 157 (588)
T 2j04_A 92 KPSPIDDWMAVL-SNNGNVSVFKDN---KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED---------GELQFFS 157 (588)
T ss_dssp EECSSSSCEEEE-ETTSCEEEEETT---EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT---------SEEEEEE
T ss_pred EECCCCCEEEEE-eCCCcEEEEeCC---ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC---------CEEEEEE
Confidence 344445555544 467789999864 4333344 210 001246789999999998777654 4688889
Q ss_pred cCCCce--------EEeeeC----CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCee-eeEEe-cCCC
Q 004816 228 LNGQNI--------QVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCV-AGFD 293 (729)
Q Consensus 228 l~~g~~--------~~lt~~----~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~-~~~~~-~~~~ 293 (729)
+.++.. ..+..+ .......+||||| |+..+.+ ..+++++++ ++... ....+ .+..
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D--------~tVrlWd~~-~~~~~~~~~tL~~~h~ 226 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN--------NSVFSMTVS-ASSHQPVSRMIQNASR 226 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT--------CCEEEECCC-SSSSCCCEEEEECCCS
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC--------CeEEEEECC-CCccccceeeeccccc
Confidence 988752 344221 2467788999999 5544422 338888988 45431 12233 3443
Q ss_pred CCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceee--eeecCCCCEEEE
Q 004816 294 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEI--IQSHGEKNLIAC 370 (729)
Q Consensus 294 ~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~--l~~~~~~~~l~~ 370 (729)
..+..++|+ |+.+..+.. ..|.++|..+++...+. .....+. ++.| . +++..+.
T Consensus 227 ----~~V~svaFs--g~~LASa~~----~tIkLWd~~~~~~~~~~~gh~~~V~---------~va~~~s----~d~~~La 283 (588)
T 2j04_A 227 ----RKITDLKIV--DYKVVLTCP----GYVHKIDLKNYSISSLKTGSLENFH---------IIPLNHE----KESTILL 283 (588)
T ss_dssp ----SCCCCEEEE--TTEEEEECS----SEEEEEETTTTEEEEEECSCCSCCC---------EEEETTC----SSCEEEE
T ss_pred ----CcEEEEEEE--CCEEEEEeC----CeEEEEECCCCeEEEEEcCCCceEE---------EEEeeeC----CCCCEEE
Confidence 567889999 453333322 37888898888775554 2222222 2333 2 4556777
Q ss_pred EEEECCeEEEEEEE
Q 004816 371 SYRQNGRSYLGILD 384 (729)
Q Consensus 371 ~s~~~g~~~ly~~d 384 (729)
.+.++|. +||..+
T Consensus 284 ~a~edG~-klw~~d 296 (588)
T 2j04_A 284 MSNKTSY-KVLLED 296 (588)
T ss_dssp ECSSCEE-EEEESS
T ss_pred EEcCCCC-EEEeec
Confidence 7777888 888764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-05 Score=84.86 Aligned_cols=206 Identities=12% Similarity=0.040 Sum_probs=118.4
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
...++|+|+|+ |+++ +.. ...|+++|++++..+.+........ ++|+|||+.|++...+. ...|
T Consensus 133 P~~la~d~~g~-lyv~-d~~-------~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~------~~~I 196 (409)
T 3hrp_A 133 MWGIAAVGNNT-VLAY-QRD-------DPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEG------THTV 196 (409)
T ss_dssp EEEEEECSTTE-EEEE-ETT-------TTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSST------TCEE
T ss_pred ceEEEEeCCCC-EEEE-ecC-------CCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCC------CceE
Confidence 36778999998 4444 432 2579999999988887765543334 89999999887766322 1269
Q ss_pred EEEEecCCCCeeeeEE--e-cCCCCCccccccCceeCC-CCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCc
Q 004816 273 WVGYISENGDVYKRVC--V-AGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL 348 (729)
Q Consensus 273 ~~~d~~~~g~~~~~~~--~-~~~~~~~~~~~~~~~wsp-DG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 348 (729)
++++.. ++.. ...+ . .... ..+..++++| +|.||+ .+. ...|+++|++++....+.... ......
T Consensus 197 ~~~d~~-~~~~-~~~~g~~~~~~~----~~p~~iav~p~~g~lyv-~d~---~~~I~~~d~~~~~~~~~~~~~-~~g~~~ 265 (409)
T 3hrp_A 197 YVYMKA-SGWA-PTRIGQLGSTFS----GKIGAVALDETEEWLYF-VDS---NKNFGRFNVKTQEVTLIKQLE-LSGSLG 265 (409)
T ss_dssp EEEEGG-GTTC-EEEEEECCTTSC----SCCCBCEECTTSSEEEE-ECT---TCEEEEEETTTCCEEEEEECC-CCSCCC
T ss_pred EEEEcC-CCce-eEEeeeccchhc----CCcEEEEEeCCCCeEEE-EEC---CCcEEEEECCCCCEEEEeccc-ccCCCC
Confidence 999987 4432 1112 1 2122 4456789999 555776 433 347999999888765542110 000111
Q ss_pred ccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC--------------CcceEEe-eeeCCEEEEE
Q 004816 349 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--------------FTDIDNI-TLGNDCLFVE 413 (729)
Q Consensus 349 w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~--------------~~~v~~~-~~~~~~~~~~ 413 (729)
|.|. +.+.|.+ +++.||++.. +...|++++.++......... ......+ ..+++.+ |+
T Consensus 266 ~~P~-~~ia~~p---~~g~lyv~d~--~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l-yv 338 (409)
T 3hrp_A 266 TNPG-PYLIYYF---VDSNFYMSDQ--NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF-YI 338 (409)
T ss_dssp CSSC-CEEEEET---TTTEEEEEET--TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE-EE
T ss_pred CCcc-ccEEEeC---CCCEEEEEeC--CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE-EE
Confidence 1110 1456653 4678887653 344688888876532222221 1123334 3334444 44
Q ss_pred EeCCCCCceEEEEEcCCCcc
Q 004816 414 GASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 414 ~~~~~~~~~ly~~d~~~~~~ 433 (729)
+.. .....|+++++.++++
T Consensus 339 ad~-~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 339 VDG-FKGYCLRKLDILDGYV 357 (409)
T ss_dssp EET-TTTCEEEEEETTTTEE
T ss_pred EeC-CCCCEEEEEECCCCEE
Confidence 432 0234688888767764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.49 E-value=9.6e-06 Score=82.94 Aligned_cols=260 Identities=11% Similarity=0.039 Sum_probs=135.2
Q ss_pred CccCceEEcCCCcEEEE-------eecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC--CEEEE
Q 004816 89 KRLGGTAVDGHGRLIWL-------ESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG--DTVIF 159 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~-------~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~i~~ 159 (729)
..++++.|++.+.+|+. +. ..+ .|++++.. +++.+.+.... ... .......+.++. +.+++
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~---~~~--~i~~~d~~-~g~~~~~~~~~--~~~--~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGK---PAG--EILRIDLK-TGKKTVICKPE--VNG--YGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTE---ECC--EEEEECTT-TCCEEEEECCE--ETT--EECCEEEEEECSSSSEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCC---CCC--EEEEEeCC-CCcEEEEEecc--cCC--CCCCCceEEEecCCCcEEE
Confidence 45689999985678887 33 123 36666644 23433332100 000 001122344443 45555
Q ss_pred EECCCCcEEEEeCCCCCCCCeec-CCCC-CCCceeeecceecCCCCEEEEEEeccCC-------CCCCcceEEEEEEcCC
Q 004816 160 SNYKDQRLYKHSIDSKDSSPLPI-TPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQ-------DALNSTTEIVAIALNG 230 (729)
Q Consensus 160 ~~~~~~~l~~~d~~~~~~~~~~l-t~~~-~~~~~~~~~~~~SPdG~~l~~~~~~~~~-------~~~~~~~~l~~~dl~~ 230 (729)
... ...|++++.+ ++.+.+ .... ........++.++|||+.+ +....... ........|++++.+
T Consensus 88 ~~~-~~~l~~~d~~---g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 88 ADM-RLGLLVVQTD---GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp EET-TTEEEEEETT---SCEEECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred EEC-CCCEEEEeCC---CCEEEEEeccCCCccccCCcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCC-
Confidence 543 3479999987 344444 3211 1111335778899999843 33321100 000112579999987
Q ss_pred CceEEeeeCCCeeeeeeeC----CCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 231 QNIQVLVSGSDFYAFPRMD----PRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 231 g~~~~lt~~~~~~~~~~~S----PDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
++.+.+........+.+|+ |||+.|++.... ...|++++++.+++....................+.++
T Consensus 162 g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~-------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 162 GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP-------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT-------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred CCEEEeccCCCCcceEEEecccCCCCCEEEEEECC-------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 6666655443445678999 999988766522 24599998762354332222222110000123457899
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
+||++++.... ...|+++|+++++......... . ....+.+.+ +++.||+....++ .|++++++
T Consensus 235 ~~G~l~v~~~~---~~~i~~~d~~~g~~~~~~~~~~-----~---~~~~i~~~~---dg~~l~v~~~~~~--~l~~~~~~ 298 (314)
T 1pjx_A 235 EDNNLLVANWG---SSHIEVFGPDGGQPKMRIRCPF-----E---KPSNLHFKP---QTKTIFVTEHENN--AVWKFEWQ 298 (314)
T ss_dssp TTCCEEEEEET---TTEEEEECTTCBSCSEEEECSS-----S---CEEEEEECT---TSSEEEEEETTTT--EEEEEECS
T ss_pred CCCCEEEEEcC---CCEEEEEcCCCCcEeEEEeCCC-----C---CceeEEECC---CCCEEEEEeCCCC--eEEEEeCC
Confidence 99986655433 2368899998665332221110 0 112334432 5555766654333 57777765
Q ss_pred C
Q 004816 387 G 387 (729)
Q Consensus 387 ~ 387 (729)
.
T Consensus 299 ~ 299 (314)
T 1pjx_A 299 R 299 (314)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=8.8e-05 Score=80.48 Aligned_cols=276 Identities=10% Similarity=0.030 Sum_probs=149.7
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEE---CCEEEEEECCCC
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF---GDTVIFSNYKDQ 165 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~ 165 (729)
..+..+.|+|++ ...+.. .++...+|....+ +....+.. +.....+..+. ++..+++...++
T Consensus 163 ~~V~~l~~~~~~-~l~s~s---~dg~i~vwd~~~~---~~~~~~~~--------h~~~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 163 GGVWALKYAHGG-ILVSGS---TDRTVRVWDIKKG---CCTHVFEG--------HNSTVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp SCEEEEEECSTT-EEEEEE---TTSCEEEEETTTT---EEEEEECC--------CSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred cCEEEEEEcCCC-EEEEEe---CCCCEEEEECCCC---cEEEEECC--------CCCccEEEEEecCCCCCEEEEEcCCC
Confidence 345678888733 333332 4577777876433 22222211 11122233333 336677777788
Q ss_pred cEEEEeCCCCCCCCeecCCCC-CC-----------------CceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 166 RLYKHSIDSKDSSPLPITPDY-GE-----------------PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~-~~-----------------~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
.|.+|++.+ +......... .. .+....-..++|+|+.++....+ ..|.++|
T Consensus 228 ~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d---------~~i~vwd 296 (464)
T 3v7d_B 228 TLHVWKLPK--ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD---------NTLIVWD 296 (464)
T ss_dssp CEEEEECCC--CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETT---------SCEEEEE
T ss_pred cEEEeeCCC--CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCC---------CeEEEEE
Confidence 999999986 4321110000 00 00000112468889987766543 3589999
Q ss_pred cCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 228 LNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 228 l~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
+.+++..... .........+|+|||+.|+..+. ...|.++|+. +++. ...+.+.. ..+..+.|+
T Consensus 297 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--------dg~i~vwd~~-~~~~--~~~~~~h~----~~v~~~~~~ 361 (464)
T 3v7d_B 297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASM--------DTTIRIWDLE-NGEL--MYTLQGHT----ALVGLLRLS 361 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET--------TSCEEEEETT-TTEE--EEEECCCS----SCEEEEEEC
T ss_pred CCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC--------CCcEEEEECC-CCcE--EEEEeCCC----CcEEEEEEc
Confidence 9887664433 34455677899999998876652 2349999998 6654 44555554 455667776
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
++.++.... .+ .|.++|+.+++............ ...|.+ +++.++ +.. +|. |.++|..
T Consensus 362 --~~~l~s~s~-dg--~v~vwd~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~l~-~~~-dg~--i~iwd~~ 420 (464)
T 3v7d_B 362 --DKFLVSAAA-DG--SIRGWDANDYSRKFSYHHTNLSA---------ITTFYV---SDNILV-SGS-ENQ--FNIYNLR 420 (464)
T ss_dssp --SSEEEEEET-TS--EEEEEETTTCCEEEEEECTTCCC---------EEEEEE---CSSEEE-EEE-TTE--EEEEETT
T ss_pred --CCEEEEEeC-CC--cEEEEECCCCceeeeecCCCCcc---------EEEEEe---CCCEEE-Eec-CCe--EEEEECC
Confidence 454444443 34 46667887765443332221111 123332 555444 443 664 5555777
Q ss_pred CCceEe--eccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEE
Q 004816 387 GHSLSL--LDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 387 ~g~~~~--lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
+++... +......+..+..+++.+++..+. ++..-++.+|
T Consensus 421 ~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~-~g~~~i~~ld 462 (464)
T 3v7d_B 421 SGKLVHANILKDADQIWSVNFKGKTLVAAVEK-DGQSFLEILD 462 (464)
T ss_dssp TCCEEESCTTTTCSEEEEEEEETTEEEEEEEE-TTEEEEEEEE
T ss_pred CCcEEehhhccCCCcEEEEEecCCEEEEEEEe-CCeEEEEEee
Confidence 777553 334455677775566666655543 3333344444
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.46 E-value=7.8e-05 Score=76.79 Aligned_cols=235 Identities=9% Similarity=-0.023 Sum_probs=135.8
Q ss_pred CceEEEEC--CEEEEEECCCCcEEEEeCCCCCCCC------eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCC
Q 004816 147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSSP------LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (729)
Q Consensus 147 ~~~~~~~~--~~i~~~~~~~~~l~~~d~~~~~~~~------~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~ 218 (729)
+.+.++++ ..++++...++.|.+||+.. .+. +.+... ...+....|+|||+.|+....+
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~--~~~~~~~~~~~l~~h----~~~V~~~~~s~dg~~l~s~~~d------- 107 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTR--DETNYGIPQRALRGH----SHFVSDVVISSDGQFALSGSWD------- 107 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECC--SSSCSEEEEEEECCC----SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCC--CCcccceeeEEEeCC----CCCEEEEEECCCCCEEEEEccc-------
Confidence 34445543 35777877888999999875 321 122322 3456788999999987766543
Q ss_pred cceEEEEEEcCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcc
Q 004816 219 STTEIVAIALNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 297 (729)
Q Consensus 219 ~~~~l~~~dl~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~ 297 (729)
..|++++...+....... .........++|+++.|+..+.+ ..+.++|+. .... ......+..
T Consensus 108 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--------~~~~~~d~~-~~~~-~~~~~~~~~---- 171 (340)
T 4aow_A 108 --GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD--------KTIKLWNTL-GVCK-YTVQDESHS---- 171 (340)
T ss_dssp --SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT--------SCEEEECTT-SCEE-EEECSSSCS----
T ss_pred --ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCC--------CeEEEEEeC-CCce-EEEEecccc----
Confidence 468888888765544433 33445567899999988766522 337777765 3321 122222222
Q ss_pred ccccCceeCCCCc--EEEEEecCCCceEEEEEEcCCCeEEEeec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEE
Q 004816 298 ESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 374 (729)
Q Consensus 298 ~~~~~~~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~ 374 (729)
..+....|++++. +++.... .+ .|.++|..+++...... ....+. .+.|.+ +++ ++++...
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~-d~--~i~i~d~~~~~~~~~~~~h~~~v~---------~~~~s~---~~~-~l~s~s~ 235 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGW-DK--LVKVWNLANCKLKTNHIGHTGYLN---------TVTVSP---DGS-LCASGGK 235 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEET-TS--CEEEEETTTTEEEEEECCCSSCEE---------EEEECT---TSS-EEEEEET
T ss_pred CcccceEEccCCCCcEEEEEcC-CC--EEEEEECCCCceeeEecCCCCcEE---------EEEECC---CCC-EEEEEeC
Confidence 4455678888876 4444433 33 46667888876554432 222222 234432 444 5556666
Q ss_pred CCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 375 NGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 375 ~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+|...|| |+.+++..........+..+ ..+++.++..+. . ..+.++|+.++.
T Consensus 236 Dg~i~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d---~~i~iwd~~~~~ 288 (340)
T 4aow_A 236 DGQAMLW--DLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT-G---PSIKIWDLEGKI 288 (340)
T ss_dssp TCEEEEE--ETTTTEEEEEEECSSCEEEEEECSSSSEEEEEE-T---TEEEEEETTTTE
T ss_pred CCeEEEE--EeccCceeeeecCCceEEeeecCCCCceeeccC-C---CEEEEEECCCCe
Confidence 7765555 66666544333334455555 444554444332 2 467888887765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.2e-05 Score=77.75 Aligned_cols=226 Identities=8% Similarity=-0.078 Sum_probs=122.4
Q ss_pred CCcEEEEeCCCCCCCCeecC-C--CCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeC
Q 004816 164 DQRLYKHSIDSKDSSPLPIT-P--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSG 239 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt-~--~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~ 239 (729)
++.|.++|.++ ++..+-. . ....-+....+..+ ++++++.+.... ..|.++|+++++. +.+ ..
T Consensus 16 ~~~l~~~d~~t--~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~~~--------~~v~viD~~t~~~~~~i-~~ 82 (328)
T 3dsm_A 16 NATLSYYDPAT--CEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVNNS--------HVIFAIDINTFKEVGRI-TG 82 (328)
T ss_dssp CBEEEEEETTT--TEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEGGG--------TEEEEEETTTCCEEEEE-EC
T ss_pred CceEEEEECCC--CEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEcCC--------CEEEEEECcccEEEEEc-CC
Confidence 45799999887 5433210 0 00000011233344 567765555432 5799999999887 445 33
Q ss_pred CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCC
Q 004816 240 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 319 (729)
Q Consensus 240 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~ 319 (729)
.....+.+++||| +|++... . ...|+++|++ +++.... +..+....-......+.+ .++++|. ++. .
T Consensus 83 ~~~p~~i~~~~~g-~lyv~~~-~------~~~v~~iD~~-t~~~~~~-i~~g~~~~~~~~p~~i~~-~~~~lyv-~~~-~ 149 (328)
T 3dsm_A 83 FTSPRYIHFLSDE-KAYVTQI-W------DYRIFIINPK-TYEITGY-IECPDMDMESGSTEQMVQ-YGKYVYV-NCW-S 149 (328)
T ss_dssp CSSEEEEEEEETT-EEEEEEB-S------CSEEEEEETT-TTEEEEE-EECTTCCTTTCBCCCEEE-ETTEEEE-EEC-T
T ss_pred CCCCcEEEEeCCC-eEEEEEC-C------CCeEEEEECC-CCeEEEE-EEcCCccccCCCcceEEE-ECCEEEE-EcC-C
Confidence 3445667899998 6655442 1 3469999988 6765322 222220000013445666 3443544 443 1
Q ss_pred CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC--------eEEEEEEECCCCceE
Q 004816 320 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG--------RSYLGILDDFGHSLS 391 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g--------~~~ly~~d~~~g~~~ 391 (729)
....|.++|+++++......... .| ..+.+. .++.+|+....+. ...|+++|.+++++.
T Consensus 150 ~~~~v~viD~~t~~~~~~i~~g~---~p------~~i~~~----~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~ 216 (328)
T 3dsm_A 150 YQNRILKIDTETDKVVDELTIGI---QP------TSLVMD----KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE 216 (328)
T ss_dssp TCCEEEEEETTTTEEEEEEECSS---CB------CCCEEC----TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCCeEEEEEEcCC---Cc------cceEEc----CCCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence 24579999999987654332211 11 233343 3455666654320 257999999988765
Q ss_pred -eeccCC-cceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 392 -LLDIPF-TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 392 -~lt~~~-~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.+..+. .....+ ...++..+|...+ .++++|.++++.
T Consensus 217 ~~~~~~~g~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~ 256 (328)
T 3dsm_A 217 KQFKFKLGDWPSEVQLNGTRDTLYWINN-----DIWRMPVEADRV 256 (328)
T ss_dssp EEEECCTTCCCEEEEECTTSCEEEEESS-----SEEEEETTCSSC
T ss_pred EEEecCCCCCceeEEEecCCCEEEEEcc-----EEEEEECCCCce
Confidence 443322 134444 3333344444432 799999988764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.4e-05 Score=88.82 Aligned_cols=229 Identities=11% Similarity=0.054 Sum_probs=138.9
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC----
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ---- 231 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g---- 231 (729)
.|+|.. ...|..+++++ .....|... ......+.+++.+++|+++.... ..|+++++++.
T Consensus 397 ~Ll~an--~~~Ir~i~l~~--~~~~~l~~~----~~~~~gl~~d~~~~~lY~sD~~~--------~~I~~~~l~g~~~~~ 460 (791)
T 3m0c_C 397 YLFFTN--RHEVRKMTLDR--SEYTSLIPN----LRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVS 460 (791)
T ss_dssp EEEEEC--BSSEEEECTTS--CCCEEEECS----CSSEEEEEEETTTTEEEEEETTT--------TEEEEEEC-------
T ss_pred cccccc--ccceeEeeccC--CcceeeecC----CCceEEEeecccCCeeEEeeccc--------eeEEEEeccCCCCCc
Confidence 355553 34699999987 655555544 23345678899888876664332 57999999863
Q ss_pred ceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 232 NIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 232 ~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
..+.+.. +.....+.++.+.++.|||+.. ....|++++++ |... ..++...- .....++..|.+.
T Consensus 461 ~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~-------~~~~I~v~~ld--G~~~-~~l~~~~l----~~P~gIaVDp~~g 526 (791)
T 3m0c_C 461 SYDTVISRDIQAPDGLAVDWIHSNIYWTDS-------VLGTVSVADTK--GVKR-KTLFRENG----SKPRAIVVDPVHG 526 (791)
T ss_dssp -CEEEECSSCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETT--SSSE-EEEEECTT----CCEEEEEEETTTT
T ss_pred ceeEEEecCCCCcceeeeeecCCcEEEEec-------CCCeEEEEeCC--CCeE-EEEEeCCC----CCcceEEEecCCC
Confidence 3344433 4445567889999999998873 23569999987 4322 23333222 3446678888755
Q ss_pred -EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 311 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 311 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
|||+ +. .....|+++++++...+.|.... + .| .+.+.+.+ .++.|||+- .+...|+++++++..
T Consensus 527 ~LYwt-D~-g~~~~I~~~~~dG~~~~~lv~~~--l---~~---P~GLavD~---~~~~LYwaD--~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 527 FMYWT-DW-GTPAKIKKGGLNGVDIYSLVTEN--I---QW---PNGITLDL---LSGRLYWVD--SKLHSISSIDVNGGN 591 (791)
T ss_dssp EEEEE-EC-SSSCEEEEEETTSCCEEEEECSS--C---SC---EEEEEEET---TTTEEEEEE--TTTTEEEEEETTSCS
T ss_pred CEEEe-cC-CCCCeEEEEecCCCceEEEEeCC--C---CC---ceEEEEec---CCCeEEEEe--CCCCcEEEEecCCCc
Confidence 6655 44 22368999999887776665321 1 11 12334432 567888874 445579999999887
Q ss_pred eEeeccC---CcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 390 LSLLDIP---FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 390 ~~~lt~~---~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.+.+... ......+...++++|+.-.. ...|++++..+|+
T Consensus 592 ~~~v~~~~~~l~~P~glav~~~~lYwtD~~---~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 592 RKTILEDEKRLAHPFSLAVFEDKVFWTDII---NEAIFSANRLTGS 634 (791)
T ss_dssp CEEEEECTTTTSSEEEEEEETTEEEEEETT---TTEEEEEETTTCC
T ss_pred eEEEecCCCccCCCCEEEEeCCEEEEEECC---CCEEEEEeCCCCc
Confidence 7766543 12233455556666554432 2467888766654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-05 Score=78.97 Aligned_cols=243 Identities=12% Similarity=0.075 Sum_probs=127.1
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEE--CCEEEEEECC-CCc
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYK-DQR 166 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~-~~~ 166 (729)
.+.++.++|.+.+|+.+.. .++ |..++.. ++....+.......... .....++++ ++.+++.... ++.
T Consensus 31 ~p~~v~~~~~g~l~v~~~~---~~~--i~~~d~~--g~~~~~~~~~~~~~~~~--~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTN---NHR--IQIFDKE--GRFKFQFGECGKRDSQL--LYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp CEEEEEECTTCCEEEEEGG---GTE--EEEECTT--SCEEEEECCBSSSTTCB--SSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCceEEECCCCCEEEEECC---CCE--EEEECCC--CcEEEEecccCCCcccc--cCceEEEEEcCCCeEEEEcCCCCCE
Confidence 4667888885567776542 233 5555544 23222221110000000 112234442 4466666543 568
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee--CCCeee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS--GSDFYA 244 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~--~~~~~~ 244 (729)
|++++.++ ...+.+.... .......+++|||+ |+++ +.. ...|++++.++...+.+.. ......
T Consensus 102 i~~~d~~g--~~~~~~~~~~---~~~~~~i~~~~~g~-l~v~-~~~-------~~~i~~~~~~g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 102 IQIYNQYG--QFVRKFGATI---LQHPRGVTVDNKGR-IIVV-ECK-------VMRVIIFDQNGNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EEEECTTS--CEEEEECTTT---CSCEEEEEECTTSC-EEEE-ETT-------TTEEEEECTTSCEEEEEECTTTCSSEE
T ss_pred EEEECCCC--cEEEEecCcc---CCCceEEEEeCCCC-EEEE-ECC-------CCEEEEEcCCCCEEEEeCCCCccCCcE
Confidence 99999654 4344443221 13346788999998 3333 322 2579999987554444432 223456
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 324 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l 324 (729)
+.+++|||+ |++... ....|++++.+ ++. ...+...... ..+..+++++||++++.... +...|
T Consensus 168 ~i~~~~~g~-l~v~~~-------~~~~i~~~~~~--g~~--~~~~~~~g~~--~~p~~i~~d~~G~l~v~~~~--~~~~i 231 (286)
T 1q7f_A 168 GVVVNDKQE-IFISDN-------RAHCVKVFNYE--GQY--LRQIGGEGIT--NYPIGVGINSNGEILIADNH--NNFNL 231 (286)
T ss_dssp EEEECSSSE-EEEEEG-------GGTEEEEEETT--CCE--EEEESCTTTS--CSEEEEEECTTCCEEEEECS--SSCEE
T ss_pred EEEECCCCC-EEEEEC-------CCCEEEEEcCC--CCE--EEEEccCCcc--CCCcEEEECCCCCEEEEeCC--CCEEE
Confidence 789999997 655542 23469999875 443 2223221100 23456789999986655433 22378
Q ss_pred EEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 325 HKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 325 ~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
.++++++...+.+.... ... ....+.+. .++.+|++ +.++...+|.+
T Consensus 232 ~~~~~~g~~~~~~~~~~-~~~------~~~~i~~~----~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 232 TIFTQDGQLISALESKV-KHA------QCFDVALM----DDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEECTTSCEEEEEEESS-CCS------CEEEEEEE----TTTEEEEE-ETTTEEEEEEC
T ss_pred EEECCCCCEEEEEcccC-CCC------cceeEEEC----CCCcEEEE-CCCCeEEEEEc
Confidence 88897665555554221 000 11234444 34467666 45665555543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-05 Score=81.96 Aligned_cols=156 Identities=9% Similarity=-0.032 Sum_probs=82.9
Q ss_pred EECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCC--C---CC-ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--G---EP-LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 152 ~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~--~---~~-~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.+.+.++.....+++||++|+.+...+++.+.... + .. ..+.....++||| |+........ ......|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~--g~~~g~v~v 168 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEE--GEGPGGILM 168 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETT--SCSCCEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcC--CCCCCeEEE
Confidence 45667777777778999999874102232221110 0 00 0122345689999 3333222211 122478999
Q ss_pred EEcCCCceEE-eeeC--C-CeeeeeeeCCCCCeEEEEEecC-----CCC-C-----CCCcEEEEEEecCCCCeeeeEEec
Q 004816 226 IALNGQNIQV-LVSG--S-DFYAFPRMDPRGERMAWIEWHH-----PNM-P-----WDKAELWVGYISENGDVYKRVCVA 290 (729)
Q Consensus 226 ~dl~~g~~~~-lt~~--~-~~~~~~~~SPDG~~la~~~~~~-----~~~-~-----~~~~~l~~~d~~~~g~~~~~~~~~ 290 (729)
+|.++.++.. +..+ . .+....+|+||++.++...|.. .+. + ....+|.++|++ +++... ++..
T Consensus 169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~~~-tI~v 246 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKRIH-SLTL 246 (462)
T ss_dssp ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEEEE-EEES
T ss_pred EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcEee-EEec
Confidence 9999988654 3322 2 2233578999999665443321 110 0 125789999998 665432 2222
Q ss_pred CCCCCccccccCc--eeCCCCcEEEEEe
Q 004816 291 GFDPTIVESPTEP--KWSSKGELFFVTD 316 (729)
Q Consensus 291 ~~~~~~~~~~~~~--~wspDG~l~~~~~ 316 (729)
+.. + .....+ .++|||+.+|+..
T Consensus 247 g~~-g--~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 247 GEE-N--RMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp CTT-E--EEEEEEEECSSTTCCEEEEEE
T ss_pred CCC-C--CccceeEeeECCCCCEEEEEE
Confidence 211 1 222333 4599999444433
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.3e-06 Score=87.25 Aligned_cols=228 Identities=12% Similarity=0.038 Sum_probs=125.1
Q ss_pred EEEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-- 232 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-- 232 (729)
..+++...++.|.+||+.+ ++ ...+... ...+...+|+|||+.|+....+ ..+.++++.++.
T Consensus 79 ~~l~s~s~D~~v~iWd~~~--~~~~~~~~~h----~~~v~~~~~s~~g~~las~~~d---------~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALT--SQKTHAIKLH----CPWVMECAFAPNGQSVACGGLD---------SACSIFNLSSQADR 143 (380)
T ss_dssp SCEEEEETTSEEEEEETTT--TEEEEEEECC----CTTCCCCEECTTSSEEEECCSS---------SCCEEEECCCCSSC
T ss_pred CEEEEEeCCCeEEEEECCC--CccceEEecC----CCCEEEEEECCCCCEEEEeeCC---------CcEEEEECCCCccc
Confidence 4556666788999999987 43 2333333 2335778899999987765443 245666765432
Q ss_pred ------eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEe-----cCCCCCcccccc
Q 004816 233 ------IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-----AGFDPTIVESPT 301 (729)
Q Consensus 233 ------~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~-----~~~~~~~~~~~~ 301 (729)
.+.+....+......|+|++...+++... ...|.++|+. +++. ...+ .+.. ..+.
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~-------D~~i~~wd~~-~~~~--~~~~~~~~~~~h~----~~v~ 209 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG-------DQTCVLWDVT-TGQR--ISIFGSEFPSGHT----ADVL 209 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT-------TSCEEEECTT-TCCE--EEEECCCSSSSCC----SCEE
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECC-------CCcEEEEEcC-CCcE--EEEeecccCCCCc----cCeE
Confidence 12233334455667899986543334422 2348889988 6654 3333 1222 3445
Q ss_pred CceeCC-CCcEEEEEecCCCceEEEEEEcCC-Ce-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeE
Q 004816 302 EPKWSS-KGELFFVTDRKNGFWNLHKWIESN-NE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 378 (729)
Q Consensus 302 ~~~wsp-DG~l~~~~~~~~g~~~l~~~d~~~-g~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~ 378 (729)
.+.|++ |+.+++.... .+. |.++|+.. ++ .+.+......+.. +.|.| +++ .+++...+|..
T Consensus 210 ~~~~~~~~~~~l~sgs~-D~~--v~~wd~~~~~~~~~~~~~h~~~v~~---------v~~~p---~~~-~l~s~s~D~~i 273 (380)
T 3iz6_a 210 SLSINSLNANMFISGSC-DTT--VRLWDLRITSRAVRTYHGHEGDINS---------VKFFP---DGQ-RFGTGSDDGTC 273 (380)
T ss_dssp EEEECSSSCCEEEEEET-TSC--EEEEETTTTCCCCEEECCCSSCCCE---------EEECT---TSS-EEEEECSSSCE
T ss_pred EEEeecCCCCEEEEEEC-CCe--EEEEECCCCCcceEEECCcCCCeEE---------EEEec---CCC-eEEEEcCCCeE
Confidence 567866 6666555554 454 45557653 22 3333333333333 34432 444 45566677776
Q ss_pred EEEEEECCCCceEee-ccCC-------cceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 379 YLGILDDFGHSLSLL-DIPF-------TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 379 ~ly~~d~~~g~~~~l-t~~~-------~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+|| |+.+++.... .... ..+..+ ...++.+++.++.. ..++++|...++.
T Consensus 274 ~lw--d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~ 332 (380)
T 3iz6_a 274 RLF--DMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN---GDCYVWDTLLAEM 332 (380)
T ss_dssp EEE--ETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT---SCEEEEETTTCCE
T ss_pred EEE--ECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC---CCEEEEECCCCce
Confidence 666 6666654332 2211 124444 34455555555432 4688888776653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.4e-05 Score=83.04 Aligned_cols=256 Identities=8% Similarity=-0.021 Sum_probs=138.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
..+..+.|+| .+.++.+.. .++...+|.......+..... ....-+...+.+..++++ ..+++...++.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~ 134 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGS---DQGVIKIWNLKEIIVGEVYSS------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQ 134 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEE---TTSEEEEEEHHHHHTTCCCSC------SEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CceEEEEECCCCCCEEEEec---CCceEEEeECcccccCcccce------eeeccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 4567889998 666666654 467778887643100110000 000012223344555543 45566667888
Q ss_pred EEEEeCC---CCCCCCeecCCC---------C--CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 167 LYKHSID---SKDSSPLPITPD---------Y--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 167 l~~~d~~---~~~~~~~~lt~~---------~--~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
|.+|++. . ++....... + ...........++|||+.|+....+ ..|.++|+.+++
T Consensus 135 i~vwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~ 203 (437)
T 3gre_A 135 IIVLKVNHYQQ--ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL---------SRVIIFDIRTLE 203 (437)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT---------SEEEEEETTTCC
T ss_pred EEEEEeccccC--CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCe
Confidence 9898884 3 322221110 0 0000111112267888877666543 479999999887
Q ss_pred eEEeeeC---CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec-CCCCCccccccCc----e
Q 004816 233 IQVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-GFDPTIVESPTEP----K 304 (729)
Q Consensus 233 ~~~lt~~---~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~-~~~~~~~~~~~~~----~ 304 (729)
......+ .......+|+|||++|+..+. ...|.++|+. .++. ...+. ... ..+..+ .
T Consensus 204 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--------dg~i~iwd~~-~~~~--~~~~~~~~~----~~v~~~~~~~~ 268 (437)
T 3gre_A 204 RLQIIENSPRHGAVSSICIDEECCVLILGTT--------RGIIDIWDIR-FNVL--IRSWSFGDH----APITHVEVCQF 268 (437)
T ss_dssp EEEEEECCGGGCCEEEEEECTTSCEEEEEET--------TSCEEEEETT-TTEE--EEEEBCTTC----EEEEEEEECTT
T ss_pred eeEEEccCCCCCceEEEEECCCCCEEEEEcC--------CCeEEEEEcC-CccE--EEEEecCCC----CceEEEEeccc
Confidence 6544433 356778899999998886662 2349999988 5553 33332 332 344455 5
Q ss_pred eCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCccccc-----------------CcceeeeeecCCCC
Q 004816 305 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFG-----------------INSYEIIQSHGEKN 366 (729)
Q Consensus 305 wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~-----------------~~~~~~l~~~~~~~ 366 (729)
|++||++++.... . ..|.++|+.+++..... ..........|.+. ...+.|. + +
T Consensus 269 ~s~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~----~-~ 340 (437)
T 3gre_A 269 YGKNSVIVVGGSS-K--TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS----N-D 340 (437)
T ss_dssp TCTTEEEEEEEST-T--EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE----T-T
T ss_pred cCCCccEEEEEcC-C--CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC----C-c
Confidence 6677775555443 2 46777888877654433 22222222223221 2334453 3 3
Q ss_pred EEEEEEEECCeEEEEEEECCCCc
Q 004816 367 LIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 367 ~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
.++++...++...+ +|+.+++
T Consensus 341 ~~l~s~~~d~~i~~--wd~~~~~ 361 (437)
T 3gre_A 341 KILLTDEATSSIVM--FSLNELS 361 (437)
T ss_dssp EEEEEEGGGTEEEE--EETTCGG
T ss_pred eEEEecCCCCeEEE--EECCCcc
Confidence 56666666775554 4766665
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-05 Score=83.89 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=60.8
Q ss_pred eEEEEEEcCCCc-----------------eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE-EEEEEecCCCC
Q 004816 221 TEIVAIALNGQN-----------------IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE-LWVGYISENGD 282 (729)
Q Consensus 221 ~~l~~~dl~~g~-----------------~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~-l~~~d~~~~g~ 282 (729)
..|.++|+.+++ .+.+..........+|||||++|+-.+. ... |.++|+. +++
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~--------d~~~v~iwd~~-~~~ 229 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ--------DGTIIRVFKTE-DGV 229 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--------TCSEEEEEETT-TCC
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--------CCCEEEEEECC-CCc
Confidence 458888888765 3445444556778899999999886662 234 8889998 676
Q ss_pred eeeeEEec-C-CCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCC
Q 004816 283 VYKRVCVA-G-FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 283 ~~~~~~~~-~-~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g 332 (729)
. ...+. + .. ..+..++|+|||++++.... .+. |.++|+..+
T Consensus 230 ~--~~~~~~g~h~----~~v~~~~~s~~~~~l~s~s~-d~~--v~iw~~~~~ 272 (355)
T 3vu4_A 230 L--VREFRRGLDR----ADVVDMKWSTDGSKLAVVSD-KWT--LHVFEIFND 272 (355)
T ss_dssp E--EEEEECTTCC----SCEEEEEECTTSCEEEEEET-TCE--EEEEESSCC
T ss_pred E--EEEEEcCCCC----CcEEEEEECCCCCEEEEEEC-CCE--EEEEEccCC
Confidence 4 33444 3 44 56678899999995444444 354 444555443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.2e-05 Score=75.14 Aligned_cols=232 Identities=9% Similarity=0.025 Sum_probs=124.0
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
++.+++....++.|+++|.++| ....++.... .....+..++|||+.++ ..+ ..|+.+|.++...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG-~~~w~~~~~~---~~~~~~~~~~pdG~ilv--s~~---------~~V~~~d~~G~~~ 68 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK-EIVWEYPLEK---GWECNSVAATKAGEILF--SYS---------KGAKMITRDGREL 68 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT-EEEEEEECCT---TCCCCEEEECTTSCEEE--ECB---------SEEEEECTTSCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCC-eEEEEeCCCc---cCCCcCeEECCCCCEEE--eCC---------CCEEEECCCCCEE
Confidence 4567777777889999998662 3334444321 12346778999999655 221 4699999954444
Q ss_pred EEeeeCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEE
Q 004816 234 QVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 234 ~~lt~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
.++..+. .......++|||+.|+-.. .. ...|+.++. +|+..+...+.............+..++||+++
T Consensus 69 W~~~~~~~~~~~~~~~~~dG~~lv~~~-~~------~~~v~~vd~--~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 69 WNIAAPAGCEMQTARILPDGNALVAWC-GH------PSTILEVNM--KGEVLSKTEFETGIERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp EEEECCTTCEEEEEEECTTSCEEEEEE-ST------TEEEEEECT--TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred EEEcCCCCccccccEECCCCCEEEEec-CC------CCEEEEEeC--CCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence 4554432 3455678999999765433 21 345777764 465433222221100000123345678999855
Q ss_pred EEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-E
Q 004816 313 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-S 391 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~ 391 (729)
+... +...|+.+|++ |+...-.... ...+ ...++ .++.+++....++ .|+.+|.++|++ .
T Consensus 140 v~~~---~~~~v~~~d~~-G~~~w~~~~~----~~~~-----~~~~~----~~g~~~v~~~~~~--~v~~~d~~tG~~~w 200 (276)
T 3no2_A 140 VPLF---ATSEVREIAPN-GQLLNSVKLS----GTPF-----SSAFL----DNGDCLVACGDAH--CFVQLNLESNRIVR 200 (276)
T ss_dssp EEET---TTTEEEEECTT-SCEEEEEECS----SCCC-----EEEEC----TTSCEEEECBTTS--EEEEECTTTCCEEE
T ss_pred EEec---CCCEEEEECCC-CCEEEEEECC----CCcc-----ceeEc----CCCCEEEEeCCCC--eEEEEeCcCCcEEE
Confidence 5443 23468899998 5543222211 1111 12233 3334444443333 599999996654 4
Q ss_pred eeccC------CcceEEe-eeeCCEEEEEEeCCC-------CCceEEEEEc
Q 004816 392 LLDIP------FTDIDNI-TLGNDCLFVEGASGV-------EPSSVAKVTL 428 (729)
Q Consensus 392 ~lt~~------~~~v~~~-~~~~~~~~~~~~~~~-------~~~~ly~~d~ 428 (729)
++... ...+..+ ..+++.+++...... ....++.++.
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~ 251 (276)
T 3no2_A 201 RVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS 251 (276)
T ss_dssp EEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred EecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC
Confidence 55422 1123333 344555555543211 2446777765
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.3e-06 Score=96.46 Aligned_cols=228 Identities=7% Similarity=-0.030 Sum_probs=129.6
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCe---ecCCCCCCCceeeecceecCC--CCEEEEEEeccCCCCCCcceEEEEEEcCCC
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~SPd--G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g 231 (729)
.+++...++.|.+|++.+ +..+ .+... ...+...+|+|+ |+.|+....+ ..|+++|+.++
T Consensus 23 ~latg~~dg~I~vwd~~~--~~~~~~~~l~~h----~~~V~~l~~s~~~~~~~l~s~s~D---------g~I~vwd~~~~ 87 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEG--ETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GKVLIWKEENG 87 (753)
T ss_dssp CEEEEETTTEEEEEEEET--TEEEEEEEECCC----SSCEEEEEECCTTSCSEEEEEETT---------SCEEEEEEETT
T ss_pred eEEEEECCCcEEEEecCC--CCCccceeccCC----cCceEEEEecCCCCCCEEEEEeCC---------CeEEEEECCCC
Confidence 344555678899999874 3222 23333 345778899998 8887766553 35888898887
Q ss_pred ceE---EeeeCCCeeeeeeeCCC--CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 232 NIQ---VLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 232 ~~~---~lt~~~~~~~~~~~SPD--G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
+.. .+..........+|+|| |+.|+..+ ....|.++|+. ++.........+.. ..+..+.|+
T Consensus 88 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--------~dg~I~vwdl~-~~~~~~~~~~~~~~----~~v~~l~~~ 154 (753)
T 3jro_A 88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--------SDGKVSVVEFK-ENGTTSPIIIDAHA----IGVNSASWA 154 (753)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--------TTSEEEEEECC-SSSCCCCEEEECCS----SCEEEEEEC
T ss_pred cccccccccCCCCCeEEEEECCCCCCCEEEEEe--------CCCcEEEEEee-cCCCcceeEeecCC----CceEEEEec
Confidence 533 23334456778899999 99888766 23469999998 55322233444444 566778899
Q ss_pred C-------------CCcEEEEEecCCCceEEEEEEcCCCe--EEEe---eccCccccCCcccccCcceeeeeecCCC--C
Q 004816 307 S-------------KGELFFVTDRKNGFWNLHKWIESNNE--VLAI---YSLDAEFSRPLWVFGINSYEIIQSHGEK--N 366 (729)
Q Consensus 307 p-------------DG~l~~~~~~~~g~~~l~~~d~~~g~--~~~l---~~~~~~~~~~~w~~~~~~~~~l~~~~~~--~ 366 (729)
| ||+++++... .|.-.+| |..++. ...+ ......+....|.+ ++ +
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~-dg~I~iw--d~~~~~~~~~~~~~~~~h~~~V~~l~~sp------------~~~~~ 219 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGA-DNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSP------------TVLLR 219 (753)
T ss_dssp CCC---------CGGGCCEEEEET-TSCEEEE--EEETTTTEEEEEEEECCCSSCEEEEEECC------------CCSSS
T ss_pred CcccccccccccCCCCCEEEEEEC-CCeEEEE--eccCCcccceeeeeecCCCCcEEEEEecc------------CCCCC
Confidence 9 5774444444 4554444 554442 1222 12222232333332 42 5
Q ss_pred EEEEEEEECCeEEEEEEECCCCceE-eec---cCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 367 LIACSYRQNGRSYLGILDDFGHSLS-LLD---IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 367 ~l~~~s~~~g~~~ly~~d~~~g~~~-~lt---~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
.++++...+|...+|-+....+... .+. .....+..+ ..+++.+++.++.. ..++.+++..
T Consensus 220 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D---g~I~vwd~~~ 285 (753)
T 3jro_A 220 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD---NKVTLWKENL 285 (753)
T ss_dssp EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS---SCEECCBCCS
T ss_pred CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC---CEEEEEecCC
Confidence 6777777888877776543221111 111 123345555 34455555555432 3466666653
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.8e-07 Score=95.09 Aligned_cols=111 Identities=9% Similarity=-0.105 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCCCCcccc-chhhhHHHhh-CCcEEEEecCCCCCCCchhHHHhh---ccCCC----cccHHHHHHHHHHH
Q 004816 492 PPLLVKSHGGPTSEARGI-LNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERL---LGRWG----IVDVNDCCSCATFL 562 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~-~~~~~~~la~-~G~~v~~~d~rGs~g~g~~~~~~~---~~~~~----~~~~~D~~~~~~~l 562 (729)
.| ||++|||++...... .......+++ .|+.|+++|+||.|.+... .... ..+++ ...++|+...++++
T Consensus 39 ~P-i~l~~Ggeg~~~~~~~~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p~-~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~l 116 (446)
T 3n2z_B 39 GS-ILFYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLPF-GDNSFKDSRHLNFLTSEQALADFAELIKHL 116 (446)
T ss_dssp CE-EEEEECCSSCHHHHHHHCHHHHHHHHHHTEEEEEECCTTSTTCCTT-GGGGGSCTTTSTTCSHHHHHHHHHHHHHHH
T ss_pred CC-EEEEeCCCCcchhhhhcccHHHHHHHHhCCcEEEEecCCCCCCCCC-CccccccchhhccCCHHHHHHHHHHHHHHH
Confidence 46 566688865432110 1123334444 4899999999976554211 1111 01122 12478899999988
Q ss_pred HhCC-CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 563 VGSG-KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 563 ~~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
..+. .....++.++||||||.+|++++. +|+++.++|+.++.
T Consensus 117 ~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssap 160 (446)
T 3n2z_B 117 KRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAP 160 (446)
T ss_dssp HHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCC
T ss_pred HHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEeccc
Confidence 7752 223468999999999999999998 99999999987753
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-05 Score=83.37 Aligned_cols=154 Identities=15% Similarity=0.106 Sum_probs=96.1
Q ss_pred EEECCEEEEE-ECCCCcEEEEeCCCCCCC-----------------CeecCCCCCCCceeeecceecCCCCEEEEEEecc
Q 004816 151 RIFGDTVIFS-NYKDQRLYKHSIDSKDSS-----------------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR 212 (729)
Q Consensus 151 ~~~~~~i~~~-~~~~~~l~~~d~~~~~~~-----------------~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~ 212 (729)
.++...+++. ...++.|.+||+.+ +. ...+... ...+...+|||||+.|+....+
T Consensus 144 ~~s~~~la~~sg~~~g~v~iwd~~~--~~~~~~~~~~~~~~~~~p~~~~~~~h----~~~v~~~~~s~~g~~l~s~s~d- 216 (355)
T 3vu4_A 144 EFSNGLLVYSNEFNLGQIHITKLQS--SGSATTQDQGVQQKAILGKGVLIKAH----TNPIKMVRLNRKSDMVATCSQD- 216 (355)
T ss_dssp EEETTEEEEEESSCTTCEEEEECCC--------------------CCEEECCC----SSCEEEEEECTTSSEEEEEETT-
T ss_pred EEEccEEEEeCCCcCcEEEEEECCC--CCccccccccccccccCcccEEEEcc----CCceEEEEECCCCCEEEEEeCC-
Confidence 3344667776 45678999999986 43 3444443 3557888999999987766543
Q ss_pred CCCCCCcceE-EEEEEcCCCceEEeee---CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE
Q 004816 213 RQDALNSTTE-IVAIALNGQNIQVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC 288 (729)
Q Consensus 213 ~~~~~~~~~~-l~~~dl~~g~~~~lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~ 288 (729)
.. |.++|+.+++...... ........+|||||++|+..+. ...|.++|+. .+.......
T Consensus 217 --------~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~--------d~~v~iw~~~-~~~~~~~~~ 279 (355)
T 3vu4_A 217 --------GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD--------KWTLHVFEIF-NDQDNKRHA 279 (355)
T ss_dssp --------CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET--------TCEEEEEESS-CCSCCCSEE
T ss_pred --------CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC--------CCEEEEEEcc-CCCCccccc
Confidence 34 8889999887654333 3456778899999999987762 3458888987 443222222
Q ss_pred ecC------CCCCcc-----------ccccCceeCCCCcEEEEEecCCCceEEEEEEc
Q 004816 289 VAG------FDPTIV-----------ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 289 ~~~------~~~~~~-----------~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~ 329 (729)
+.. ....|. .....++|++||+.++.... .|...+|.+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~-dg~~~~~~~~~ 336 (355)
T 3vu4_A 280 LKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH-TRMIETFKVVF 336 (355)
T ss_dssp TTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT-TTEEEEEEEEE
T ss_pred ccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC-CCeEEEEEEEc
Confidence 111 000000 11134689999984444444 57777776554
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-05 Score=82.55 Aligned_cols=134 Identities=8% Similarity=-0.082 Sum_probs=81.1
Q ss_pred eecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCC--CCcEEE
Q 004816 197 IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELW 273 (729)
Q Consensus 197 ~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~--~~~~l~ 273 (729)
...|||++++......... ...|+++|.+++++. .+..+... +..+||||++||......+...+ ....|.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~----~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAA----VTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCTTEEEEEECGGGCS----SEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCC----CCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEE
Confidence 4579999865444321111 258999999998764 44434443 48999999999877631110000 124599
Q ss_pred EEEecCCCCeeeeEEecCCCC-CccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 274 VGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 274 ~~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
++|.. +++......+..... .-......+.++|||+.+|+++. .....+.++|.++++...-.
T Consensus 113 viD~~-t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~-~~~~~VsVID~~t~~vv~tI 176 (386)
T 3sjl_D 113 VFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKAFKRML 176 (386)
T ss_dssp EECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEE
T ss_pred EEECC-CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc-CCCCeEEEEECCCCcEEEEE
Confidence 99988 676533322322000 00024467899999996566654 33467999999998765433
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-05 Score=81.24 Aligned_cols=115 Identities=6% Similarity=-0.093 Sum_probs=81.2
Q ss_pred CceEEEECC----EEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcce
Q 004816 147 GGAFRIFGD----TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT 221 (729)
Q Consensus 147 ~~~~~~~~~----~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~ 221 (729)
+.+..++++ ..+++...++.|.+|++.+.+... ..+... ...+...+|+|||+.|+....+ .
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------g 108 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH----TGPVLDVCWSDDGSKVFTASCD---------K 108 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC----SSCEEEEEECTTSSEEEEEETT---------S
T ss_pred eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc----cCCEEEEEECcCCCEEEEEcCC---------C
Confidence 344555543 677777778899999987510222 233333 3456788999999988766543 4
Q ss_pred EEEEEEcCCCceEEeeeCCCeeeeeee--CCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe
Q 004816 222 EIVAIALNGQNIQVLVSGSDFYAFPRM--DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV 283 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt~~~~~~~~~~~--SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~ 283 (729)
.|.++|+.+++...+...........| +|||+.|+..+ ....|.++|+. +++.
T Consensus 109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~dg~i~vwd~~-~~~~ 163 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGS--------WDKTLKFWDTR-SSNP 163 (368)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEE--------TTSEEEEECSS-CSSC
T ss_pred cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEcc--------CCCcEEEEECC-CCcE
Confidence 699999999888777666667778899 99999887666 23459999988 5654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-05 Score=81.03 Aligned_cols=227 Identities=9% Similarity=0.014 Sum_probs=123.0
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC-CCCCcc---------ccccc-ccCCceEEEE--CC
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAV---------RTTAQ-EYGGGAFRIF--GD 155 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~-~~~~~~---------~~~~~-~~~~~~~~~~--~~ 155 (729)
..++++.|++.+.++|++. ..++ |++++..+ +..+.+. +..+.. ..... ......+.++ ++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~---~~~~--i~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSV---QDGR--VIKYEGPN-SGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp SCCCCEECCTTCSSEEEEC---TTSE--EEEECCTT-TCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CCceEEEEcCCCCEEEEEc---CCCe--EEEECCCC-CceEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 4678999998666777765 2343 66666552 2222221 111000 00000 0011224455 34
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCC-CceeeecceecC-CCCEEEEEEeccCCCC---------CCcceEEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE-PLVSYADGIFDP-RFNRYVTVREDRRQDA---------LNSTTEIV 224 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~-~~~~~~~~~~SP-dG~~l~~~~~~~~~~~---------~~~~~~l~ 224 (729)
.|++... ...|++++.++ +..+.+...... ......+.+++| ||+ |++......... ......|+
T Consensus 93 ~l~v~d~-~~~i~~~d~~~--g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 93 QLYIVDC-YYHLSVVGSEG--GHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp EEEEEET-TTEEEEECTTC--EECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred cEEEEEC-CCCEEEEeCCC--CEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEE
Confidence 6665543 34599999886 655555432110 012347788999 997 344322110000 01136799
Q ss_pred EEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCce
Q 004816 225 AIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 304 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (729)
+++.++++.+.+..+.....+.+|+|||+.|++.... ...|++++++ ++.......+.... . ...+.
T Consensus 169 ~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~-------~~~I~~~~~~-~~~~~~~~~~~~~~----g-P~gi~ 235 (322)
T 2fp8_A 169 KYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL-------SHQIVKYWLE-GPKKGTAEVLVKIP----N-PGNIK 235 (322)
T ss_dssp EEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG-------GTEEEEEESS-STTTTCEEEEEECS----S-EEEEE
T ss_pred EEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCC-------CCeEEEEECC-CCcCCccceEEeCC----C-CCCeE
Confidence 9999888777665544455678999999988877632 3469999987 43222222222222 2 45678
Q ss_pred eCCCCcEEEEEecC-------CCceEEEEEEcCCCeEEEee
Q 004816 305 WSSKGELFFVTDRK-------NGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 305 wspDG~l~~~~~~~-------~g~~~l~~~d~~~g~~~~l~ 338 (729)
..+||+|++..... .....|+++|+++...+.+.
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~ 276 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP 276 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEE
Confidence 89999855443220 01457999998755444444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=7.7e-05 Score=83.98 Aligned_cols=230 Identities=14% Similarity=0.143 Sum_probs=143.8
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.|+|.. ...|.++++++ .....+....+ -.......|+++++.|+++... ...|++++++++..+.
T Consensus 8 ~Ll~s~--~~~I~~i~l~~--~~~~~~~~~~~--~~~~~~l~~d~~~~~lywtD~~--------~~~I~r~~~~g~~~~~ 73 (628)
T 4a0p_A 8 FLLFSR--RADIRRISLET--NNNNVAIPLTG--VKEASALDFDVTDNRIYWTDIS--------LKTISRAFMNGSALEH 73 (628)
T ss_dssp EEEEEE--TTEEEEEESSC--TTCEEECCCCS--CSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCSCEE
T ss_pred EEEEEe--CCcEEEEECCC--CCcceEEEcCC--CCceEEEEEECCCCEEEEEECC--------CCeEEEEECCCCCcEE
Confidence 466763 55799999987 54433322210 1234567899998887666432 2579999999876665
Q ss_pred eee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEE
Q 004816 236 LVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 313 (729)
Q Consensus 236 lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~ 313 (729)
+.. +.....+.+..+.++.|+|+.. ....|.+++++ +... ..+....- .....++..|... |||
T Consensus 74 v~~~g~~~P~GlAvD~~~~~LY~tD~-------~~~~I~v~~~d-G~~~--~~l~~~~l----~~P~~iavdp~~G~lY~ 139 (628)
T 4a0p_A 74 VVEFGLDYPEGMAVDWLGKNLYWADT-------GTNRIEVSKLD-GQHR--QVLVWKDL----DSPRALALDPAEGFMYW 139 (628)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETT-STTC--EEEECSSC----CCEEEEEEETTTTEEEE
T ss_pred EEeCCCCCcceEEEEeCCCEEEEEEC-------CCCEEEEEecC-CCcE--EEEEeCCC----CCcccEEEccCCCeEEE
Confidence 543 4344567788888999998863 23569999987 3322 23332221 3445677887544 655
Q ss_pred EEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
+ +. .....|+++++++...+.+... ...| +.+.+.+ +++.|||+-. +...|++++++++..+.+
T Consensus 140 t-D~-g~~~~I~r~~~dG~~~~~l~~~---~~~P------~GlalD~---~~~~LY~aD~--~~~~I~~~d~dG~~~~v~ 203 (628)
T 4a0p_A 140 T-EW-GGKPKIDRAAMDGSERTTLVPN---VGRA------NGLTIDY---AKRRLYWTDL--DTNLIESSNMLGLNREVI 203 (628)
T ss_dssp E-EC-SSSCEEEEEETTSCSCEEEECS---CSSE------EEEEEET---TTTEEEEEET--TTTEEEEEETTSCSCEEE
T ss_pred e-CC-CCCCEEEEEeCCCCceEEEECC---CCCc------ceEEEcc---ccCEEEEEEC--CCCEEEEEcCCCCceEEe
Confidence 4 54 2356899999988777766531 1111 2344432 5788988764 445789999988776655
Q ss_pred ccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 394 DIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 394 t~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.........+..+++.+++.-. ....|+++|..+|+
T Consensus 204 ~~~l~~P~glav~~~~ly~tD~---~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 204 ADDLPHPFGLTQYQDYIYWTDW---SRRSIERANKTSGQ 239 (628)
T ss_dssp EECCSCEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred eccCCCceEEEEECCEEEEecC---CCCEEEEEECCCCC
Confidence 4444444455555676665542 23478999876664
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.1e-05 Score=81.08 Aligned_cols=240 Identities=8% Similarity=-0.036 Sum_probs=132.6
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEE----CCEEEEEECC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF----GDTVIFSNYK 163 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~ 163 (729)
..+..+.|+| ++.++.+.. .++...+|..... +....+..... .....+. +..+++....
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~---~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSS---FDKTLKVWDTNTL---QTADVFNFEET---------VYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEE---TTSEEEEEETTTT---EEEEEEECSSC---------EEEEEECSSCSSCCEEEEEES
T ss_pred CcEEEEEEccCCCcEEEEEe---CCCeEEEeeCCCC---ccceeccCCCc---------eeeeEeecCCCCCcEEEEEcC
Confidence 3567889999 776666654 3567777765433 22222211100 1112222 2235666667
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--eEEe-----
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--IQVL----- 236 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--~~~l----- 236 (729)
++.|.+||+.++ .....+... ...+..++|+|+|++++++...+ ..|.++|+.++. ...+
T Consensus 165 ~~~v~~~d~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~ll~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 165 GPKVQLCDLKSG-SCSHILQGH----RQEILAVSWSPRYDYILATASAD--------SRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp SSSEEEEESSSS-CCCEEECCC----CSCEEEEEECSSCTTEEEEEETT--------SCEEEEETTCSSCCSEECCTTTT
T ss_pred CCeEEEEeCCCc-ceeeeecCC----CCcEEEEEECCCCCcEEEEEcCC--------CcEEEEECCCCCccccccccccc
Confidence 889999999872 334445443 34567889999999755554433 458888987653 2222
Q ss_pred ----------eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 237 ----------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 237 ----------t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
..........+|+|||++|+..+. ...|.++|+. +++... .................+.
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~vwd~~-~~~~~~--~~~~~~~~~~~~~~~~~~~ 300 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT--------DNRMRLWNSS-NGENTL--VNYGKVCNNSKKGLKFTVS 300 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET--------TSCEEEEETT-TCCBCC--CCCCCCCCCCSSCCCCEEC
T ss_pred ccceeeccccccccCceeEEEEcCCCCEEEEecC--------CCeEEEEECC-CCccce--eccccccccccccceeEEe
Confidence 112344567899999999987662 2349999998 555311 1111100000111222333
Q ss_pred CC-Cc-EEEEEecCCCceEEEEEEcCCCeEEEeec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 307 SK-GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 307 pD-G~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
.+ +. +++.... ..|.++|..+++...... ....+.. +.|.+ +++ ++++...+|...+|.+
T Consensus 301 ~~~~~~~~~~~~~----~~i~v~d~~~~~~~~~~~~~~~~v~~---------~~~s~---~~~-~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 301 CGCSSEFVFVPYG----STIAVYTVYSGEQITMLKGHYKTVDC---------CVFQS---NFQ-ELYSGSRDCNILAWVP 363 (408)
T ss_dssp CSSSSCEEEEEET----TEEEEEETTTCCEEEEECCCSSCEEE---------EEEET---TTT-EEEEEETTSCEEEEEE
T ss_pred cCCCceEEEEecC----CEEEEEECcCCcceeeeccCCCeEEE---------EEEcC---CCC-EEEEECCCCeEEEEeC
Confidence 33 23 6655544 367778888876554442 2222333 34442 444 5556777887777755
Q ss_pred E
Q 004816 384 D 384 (729)
Q Consensus 384 d 384 (729)
+
T Consensus 364 ~ 364 (408)
T 4a11_B 364 S 364 (408)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=9.7e-05 Score=80.14 Aligned_cols=232 Identities=12% Similarity=0.044 Sum_probs=132.5
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceec--CCCCEEEEEEeccCCCCCCcceEE
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFD--PRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~S--PdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
..+..++++.++++...++.|.+||+.+ ++. ..+... ...+....|+ |+++.++....+ ..|
T Consensus 165 V~~l~~~~~~~l~s~s~dg~i~vwd~~~--~~~~~~~~~h----~~~v~~l~~~~~~~~~~l~s~s~d---------~~i 229 (464)
T 3v7d_B 165 VWALKYAHGGILVSGSTDRTVRVWDIKK--GCCTHVFEGH----NSTVRCLDIVEYKNIKYIVTGSRD---------NTL 229 (464)
T ss_dssp EEEEEECSTTEEEEEETTSCEEEEETTT--TEEEEEECCC----SSCEEEEEEEESSSCEEEEEEETT---------SCE
T ss_pred EEEEEEcCCCEEEEEeCCCCEEEEECCC--CcEEEEECCC----CCccEEEEEecCCCCCEEEEEcCC---------CcE
Confidence 3445555554667777888999999987 543 333322 2344555566 677776655543 357
Q ss_pred EEEEcCCCceEE-----------------------eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCC
Q 004816 224 VAIALNGQNIQV-----------------------LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN 280 (729)
Q Consensus 224 ~~~dl~~g~~~~-----------------------lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~ 280 (729)
.++|+.+++... ...+. ...-.+++|+|+.|+..+. ...|.++|+. +
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~~--------d~~i~vwd~~-~ 299 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH-MASVRTVSGHGNIVVSGSY--------DNTLIVWDVA-Q 299 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC-SSCEEEEEEETTEEEEEET--------TSCEEEEETT-T
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc-cceEEEEcCCCCEEEEEeC--------CCeEEEEECC-C
Confidence 888887754221 11111 1112356899998876662 2349999988 6
Q ss_pred CCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeec-cCccccCCcccccCcceeee
Q 004816 281 GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEII 359 (729)
Q Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~l 359 (729)
++. ...+.+.. ..+..+.|+|||+.+++... .+ .|.++|+.+++...... ....+ ..+.+
T Consensus 300 ~~~--~~~~~~~~----~~v~~~~~~~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~h~~~v---------~~~~~- 360 (464)
T 3v7d_B 300 MKC--LYILSGHT----DRIYSTIYDHERKRCISASM-DT--TIRIWDLENGELMYTLQGHTALV---------GLLRL- 360 (464)
T ss_dssp TEE--EEEECCCS----SCEEEEEEETTTTEEEEEET-TS--CEEEEETTTTEEEEEECCCSSCE---------EEEEE-
T ss_pred CcE--EEEecCCC----CCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEEeCCCCcE---------EEEEE-
Confidence 654 44555554 56678899999995545444 34 46677888876554332 21111 12233
Q ss_pred eecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 360 QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 360 ~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+++ .+++...+|...+| |+.++...........+..+ ...++.+++.++ . ..+.++|+.+++.
T Consensus 361 ----~~~-~l~s~s~dg~v~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d---g~i~iwd~~~g~~ 424 (464)
T 3v7d_B 361 ----SDK-FLVSAAADGSIRGW--DANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E---NQFNIYNLRSGKL 424 (464)
T ss_dssp ----CSS-EEEEEETTSEEEEE--ETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T---TEEEEEETTTCCE
T ss_pred ----cCC-EEEEEeCCCcEEEE--ECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C---CeEEEEECCCCcE
Confidence 333 55566667765555 66665543332222222222 333444555544 2 4788999988874
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-05 Score=82.83 Aligned_cols=97 Identities=2% Similarity=-0.215 Sum_probs=57.8
Q ss_pred EEEEEECCCC----cEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEecc-CCCCCCcceEEEEEEcC
Q 004816 156 TVIFSNYKDQ----RLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALN 229 (729)
Q Consensus 156 ~i~~~~~~~~----~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~-~~~~~~~~~~l~~~dl~ 229 (729)
+++..+...+ +++++|.++ ++. ..+..+ ... .+.+||||++++...... ..........|.++|+.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t--~~v~~~i~vG-----~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~ 104 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGC--GVTLGHSLGA-----FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTT--TEEEEEEEEC-----TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred eEEEECCccCCccceEEEEECCC--CeEEEEEeCC-----CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4555555444 899999987 433 333322 112 588999999865553210 00000113679999999
Q ss_pred CCceE-EeeeC--C-----CeeeeeeeCCCCCeEEEEEe
Q 004816 230 GQNIQ-VLVSG--S-----DFYAFPRMDPRGERMAWIEW 260 (729)
Q Consensus 230 ~g~~~-~lt~~--~-----~~~~~~~~SPDG~~la~~~~ 260 (729)
++++. .+.-+ . ..-.+..+||||++|+....
T Consensus 105 T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~ 143 (368)
T 1mda_H 105 TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF 143 (368)
T ss_dssp TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEcc
Confidence 98764 34322 1 12346789999999877653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3.7e-05 Score=76.58 Aligned_cols=226 Identities=13% Similarity=0.052 Sum_probs=119.3
Q ss_pred EEEE-EECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 TVIF-SNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 ~i~~-~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
.+++ .....+.|++++..+ +....+.... .......+++|||+ |++. ... ..|++++.+++..+
T Consensus 36 ~l~v~~~~~~~~i~~~~~~~--~~~~~~~~~~---~~~p~~i~~~~~g~-l~v~-~~~--------~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 36 NVYVTSEGMYGRVVKLATGS--TGTTVLPFNG---LYQPQGLAVDGAGT-VYVT-DFN--------NRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEECSSSCEEEEECC-------EECCCCS---CCSCCCEEECTTCC-EEEE-ETT--------TEEEEECTTCSCCE
T ss_pred CEEEEccCCCCcEEEecCCC--cccceEeeCC---cCCcceeEECCCCC-EEEE-cCC--------CEEEEEeCCCceEe
Confidence 5555 445567899999875 5444433221 12346778999998 4433 322 46999999877665
Q ss_pred Eeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 235 VLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 235 ~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
.+.. +.....+.+++|||+ |++.... ...|++++.. +... ........ ..+..+.+++||++++
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~-l~v~~~~-------~~~i~~~~~~-~~~~--~~~~~~~~----~~p~~i~~~~~g~l~v 165 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGA-VYVADRG-------NNRVVKLAAG-SKTQ--TVLPFTGL----NDPDGVAVDNSGNVYV 165 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCC-EEEEEGG-------GTEEEEECTT-CCSC--EECCCCSC----CSCCCEEECTTCCEEE
T ss_pred eeecCCcCCCcceEECCCCC-EEEEECC-------CCEEEEEECC-Ccee--EeeccccC----CCceeEEEeCCCCEEE
Confidence 5532 224456778999997 6555422 3458888643 2221 11111111 3456788999998555
Q ss_pred EEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
... +...|++++++++......... .. ....+.+. .++.+|++...+ ..|++++.++.....+
T Consensus 166 ~~~---~~~~i~~~~~~~~~~~~~~~~~--~~------~p~~i~~d----~~g~l~v~~~~~--~~v~~~~~~~~~~~~~ 228 (270)
T 1rwi_B 166 TDT---DNNRVVKLEAESNNQVVLPFTD--IT------APWGIAVD----EAGTVYVTEHNT--NQVVKLLAGSTTSTVL 228 (270)
T ss_dssp EEG---GGTEEEEECTTTCCEEECCCSS--CC------SEEEEEEC----TTCCEEEEETTT--SCEEEECTTCSCCEEC
T ss_pred EEC---CCCEEEEEecCCCceEeecccC--CC------CceEEEEC----CCCCEEEEECCC--CcEEEEcCCCCcceee
Confidence 443 2357899998877654432111 11 11233443 334566654323 3577888877665444
Q ss_pred ccC-CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 394 DIP-FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 394 t~~-~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
... ......+ ...++.+++.... ...|.++++...
T Consensus 229 ~~~~~~~p~~i~~~~~g~l~v~~~~---~~~v~~~~~~~~ 265 (270)
T 1rwi_B 229 PFTGLNTPLAVAVDSDRTVYVADRG---NDRVVKLTSLEH 265 (270)
T ss_dssp CCCSCSCEEEEEECTTCCEEEEEGG---GTEEEEECCCGG
T ss_pred ccCCCCCceeEEECCCCCEEEEECC---CCEEEEEcCCCc
Confidence 322 2334445 2333444333322 134555555443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00011 Score=74.62 Aligned_cols=272 Identities=9% Similarity=0.027 Sum_probs=145.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
..+..+.| | ++.++- .. .+|...+|..... ........ +.....+..++++ ..+++...++.
T Consensus 19 ~~v~~~~~-~~~~~l~s-~~---~dg~v~vw~~~~~---~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVAS-VS---RDGTVRLWSKDDQ---WLGTVVYT--------GQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp SCEEEEEE-EETTEEEE-EE---TTSEEEEEEESSS---EEEEEEEE--------CSSCEEEEEEETTTTEEEEEETTSC
T ss_pred CCcEEEEe-cCCCEEEE-EE---cCCcEEEEECCCC---EEEEEeec--------CCccEEEEEECCCCCEEEEecCCCe
Confidence 34567788 6 555443 32 4577777766332 22211111 1112233444432 34555556788
Q ss_pred EEEEeCCCCC-CC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 167 LYKHSIDSKD-SS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 167 l~~~d~~~~~-~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
+.++++.... .+ ...+... ...+....| +++.++....+ ..|.++| .......+........
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~--~~~~l~~~~~d---------~~i~~~d-~~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGH----QGNVCSLSF--QDGVVISGSWD---------KTAKVWK-EGSLVYNLQAHNASVW 146 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCC----SSCEEEEEE--ETTEEEEEETT---------SEEEEEE-TTEEEEEEECCSSCEE
T ss_pred EEEEEeeecCCCCcccchhhc----ccCEEEEEe--cCCEEEEEeCC---------CCEEEEc-CCcEEEecccCCCcee
Confidence 9999986510 11 2223222 234455556 67776655543 4688888 2223334444455566
Q ss_pred eeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecC-CCCCccccccCceeCCCCcEEEEEecCCCce
Q 004816 245 FPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDPTIVESPTEPKWSSKGELFFVTDRKNGFW 322 (729)
Q Consensus 245 ~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~-~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~ 322 (729)
...|+| +++.|+.... ...|.++|.. + ....+.. .. ..+..+.|+|+++++ .... .+
T Consensus 147 ~~~~~~~~~~~l~~~~~--------d~~i~i~d~~---~--~~~~~~~~~~----~~i~~~~~~~~~~~~-~~~~-dg-- 205 (313)
T 3odt_A 147 DAKVVSFSENKFLTASA--------DKTIKLWQND---K--VIKTFSGIHN----DVVRHLAVVDDGHFI-SCSN-DG-- 205 (313)
T ss_dssp EEEEEETTTTEEEEEET--------TSCEEEEETT---E--EEEEECSSCS----SCEEEEEEEETTEEE-EEET-TS--
T ss_pred EEEEccCCCCEEEEEEC--------CCCEEEEecC---c--eEEEEeccCc----ccEEEEEEcCCCeEE-EccC-CC--
Confidence 778887 9998876652 2348888733 2 2333433 33 556778999999833 3333 33
Q ss_pred EEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-EeeccCCcce
Q 004816 323 NLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDI 400 (729)
Q Consensus 323 ~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~~lt~~~~~v 400 (729)
.|.++|..+++..... .....+.. +.|.+ ++ . +++...+|...+ +++.+++. ..+..+...+
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~i~~---------~~~~~---~~-~-l~~~~~dg~v~i--wd~~~~~~~~~~~~~~~~i 269 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHESFVYC---------IKLLP---NG-D-IVSCGEDRTVRI--WSKENGSLKQVITLPAISI 269 (313)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEE---------EEECT---TS-C-EEEEETTSEEEE--ECTTTCCEEEEEECSSSCE
T ss_pred eEEEEECCchhhhhhhhcCCceEEE---------EEEec---CC-C-EEEEecCCEEEE--EECCCCceeEEEeccCceE
Confidence 5777788877654433 22222222 33432 44 3 445556666544 47766664 3445555567
Q ss_pred EEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 401 DNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 401 ~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
..+ ..+++.++ .++. ...++.+++.+++.
T Consensus 270 ~~~~~~~~~~~~-~~~~---dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 270 WSVDCMSNGDII-VGSS---DNLVRIFSQEKSRW 299 (313)
T ss_dssp EEEEECTTSCEE-EEET---TSCEEEEESCGGGC
T ss_pred EEEEEccCCCEE-EEeC---CCcEEEEeCCCCce
Confidence 777 44444433 3333 24677778777654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-05 Score=80.55 Aligned_cols=228 Identities=9% Similarity=-0.003 Sum_probs=122.0
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCC---eecCCCCCCCceeeecceecC--CCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~---~~lt~~~~~~~~~~~~~~~SP--dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
..+++...++.|.+||+.+ +.. ..+... ...+...+|+| +|+.|+....+ ..|.++|+.+
T Consensus 26 ~~lasgs~D~~v~lwd~~~--~~~~~~~~l~gH----~~~V~~v~~~~~~~~~~l~s~s~D---------~~v~iWd~~~ 90 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRN--GGQILIADLRGH----EGPVWQVAWAHPMYGNILASCSYD---------RKVIIWREEN 90 (316)
T ss_dssp CEEEEEETTTEEEEEEEET--TEEEEEEEEECC----SSCEEEEEECCGGGSSCEEEEETT---------SCEEEECCSS
T ss_pred CEEEEEeCCCeEEEEEecC--CCcEEEEEEcCC----CccEEEEEeCCCCCCCEEEEEECC---------CEEEEEECCC
Confidence 3455666788899999876 432 233333 34567888987 48876655543 3588889887
Q ss_pred CceE---EeeeCCCeeeeeeeCCC--CCeEEEEEecCCCCCCCCcEEEEEEecCCCC-eeeeEEecCCCCCccccccCce
Q 004816 231 QNIQ---VLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPK 304 (729)
Q Consensus 231 g~~~---~lt~~~~~~~~~~~SPD--G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 304 (729)
++.. .+..........+|+|| |+.|+..+. ...|.++|+. ++. ........+.. ..+..+.
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~--------D~~i~lwd~~-~~~~~~~~~~~~~h~----~~v~~~~ 157 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS--------DGAISLLTYT-GEGQWEVKKINNAHT----IGCNAVS 157 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS--------SSCEEEEEEC-SSSCEEECCBTTSSS----SCBCCCE
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC--------CCCEEEEecC-CCCCcceeeeecccc----CCcceEE
Confidence 6422 23233455677899998 777765542 2348888887 442 21122223333 4566788
Q ss_pred eCCCC-----------------cEEEEEecCCCceEEEEEEcCCC-eEEEee---ccCccccCCcccccCcceeeeeecC
Q 004816 305 WSSKG-----------------ELFFVTDRKNGFWNLHKWIESNN-EVLAIY---SLDAEFSRPLWVFGINSYEIIQSHG 363 (729)
Q Consensus 305 wspDG-----------------~l~~~~~~~~g~~~l~~~d~~~g-~~~~l~---~~~~~~~~~~w~~~~~~~~~l~~~~ 363 (729)
|+|++ +++..... .+.-.|| |..++ +.+.+. .....+....|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-D~~v~lW--d~~~~~~~~~~~~l~~h~~~V~~v~~sp------------ 222 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGC-DNLIKLW--KEEEDGQWKEEQKLEAHSDWVRDVAWAP------------ 222 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBT-TSBCCEE--EECTTSCEEEEECCBCCSSCEEEEECCC------------
T ss_pred EccccCCccccccccccCccccceEEEecC-CCeEEEE--EeCCCCccceeeecccCCCceEEEEecC------------
Confidence 99983 33333333 3444555 44433 222222 2222222233333
Q ss_pred CC---CEEEEEEEECCeEEEEEEECCC-Cc--eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEE
Q 004816 364 EK---NLIACSYRQNGRSYLGILDDFG-HS--LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 364 ~~---~~l~~~s~~~g~~~ly~~d~~~-g~--~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
++ ..++++...++...||.++... +. .+.+......+..+ ..+++.+++.++. +..-.+|..+
T Consensus 223 ~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~-D~~v~lw~~~ 292 (316)
T 3bg1_A 223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG-DNKVTLWKES 292 (316)
T ss_dssp CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES-SSCEEEEEEC
T ss_pred CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC-CCeEEEEEEC
Confidence 32 2566777788888887553211 11 22333334456666 4445555555543 3333445443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-05 Score=82.67 Aligned_cols=221 Identities=9% Similarity=-0.044 Sum_probs=121.4
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCC-CcccccccccCCceEEEEC-CEEEEEECC---
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE-YAVRTTAQEYGGGAFRIFG-DTVIFSNYK--- 163 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--- 163 (729)
..+.++.++|++++|....+-.+ +...|+..+ . |+... ++.. ......+. ......++. ++|++.+..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~-~~~~l~~~~-~--g~~~~-~p~~~~~~~~~~~--~p~gv~~d~~g~L~v~D~g~~~ 89 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQ-PEMQVAELT-Q--DGLIP-FPPQSGNAIITFD--TVLGIKSDGNGIVWMLDNGNQS 89 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGC-CSCSEEEEE-T--TEEEE-SCCCCSSCCCCCS--CEEEEEECSSSEEEEEECHHHH
T ss_pred CCcceEEECCCCCEEEEeCCCCC-CceEEEEEC-C--CCeec-CCCcccCccccee--EeeEEEEcCCCcEEEEcCCCCc
Confidence 36788999986677776544322 214466665 3 23221 1110 00001111 112234443 466666543
Q ss_pred --CCcEEEEeCCCCCCC-CeecCCC--CCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee
Q 004816 164 --DQRLYKHSIDSKDSS-PLPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS 238 (729)
Q Consensus 164 --~~~l~~~d~~~~~~~-~~~lt~~--~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~ 238 (729)
..+|+++|+++ ++ .+.+... .........+++++|++.++ |+.+.... ....|+++|+++++..++..
T Consensus 90 ~~~~~i~~~d~~t--g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~-yvtd~~~~----~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 90 KSVPKLVAWDTLN--NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFV-YISDPAPD----DKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp TSCCEEEEEETTT--TEEEEEEECCTTTSCTTCCCCEEEEETTTTEE-EEEECCSG----GGCEEEEEETTTCCEEEECT
T ss_pred CCCCeEEEEECCC--CeEEEEEECChhhcccccccceEEEecCCCEE-EEEcCccC----CCCeEEEEECCCCCEEEEec
Confidence 46899999987 55 3333221 01112345788999987765 44443100 13579999999887766432
Q ss_pred CC------------------------------CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec--CCCCeee-
Q 004816 239 GS------------------------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDVYK- 285 (729)
Q Consensus 239 ~~------------------------------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~--~~g~~~~- 285 (729)
+. ....+.+|||||+.|++.... ...||.++.+ .++....
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-------~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-------STSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-------CSEEEEEEHHHHTCTTCCHH
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-------CCeEEEEEHHHhcCCCCChh
Confidence 20 113568999999999887642 3469998864 1222111
Q ss_pred -----eEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 286 -----RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 286 -----~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
.... +.. .....+++++||.+|+.. . +...|.++|+++|+...+.
T Consensus 236 ~~~~~~~~~-g~~----g~pdgia~d~~G~l~va~-~--~~~~V~~~d~~~G~~~~~~ 285 (343)
T 2qe8_A 236 ELGSKIERY-SEK----PICDGISIDKDHNIYVGD-L--AHSAIGVITSADRAYKLLV 285 (343)
T ss_dssp HHHTTCEEE-EEC----CSCSCEEECTTCCEEEEE-G--GGTEEEEEETTTTEEEEEE
T ss_pred hhhcceEec-ccC----CCCceEEECCCCCEEEEc-c--CCCeEEEEECCCCCEEEEE
Confidence 1111 111 234578999999765553 3 3457999998567665554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-05 Score=80.08 Aligned_cols=202 Identities=7% Similarity=-0.038 Sum_probs=110.9
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC-CEEEEEECCC--C
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKD--Q 165 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~ 165 (729)
..++++.|+|.+.+||++.. .+ .|++++.+ ++.......+. . ...+.++. +.+++..... .
T Consensus 32 ~~pegia~~~~g~lyv~d~~---~~--~I~~~d~~--g~~~~~~~~~~-------~--p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHE---VG--EIVSITPD--GNQQIHATVEG-------K--VSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp CCEEEEEECTTSCEEEEETT---TT--EEEEECTT--CCEEEEEECSS-------E--EEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCC---CC--eEEEECCC--CceEEEEeCCC-------C--ceeEEEcCCCcEEEEeccCCcc
Confidence 46789999985569998752 33 37777766 23322221110 0 11233442 3455555332 2
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe--ee-----
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL--VS----- 238 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l--t~----- 238 (729)
+|+.++..+ ++.+.+....+ .......+..+++ .+ |+.+.. ...||++|.++++.+.. ..
T Consensus 96 ~v~~~d~~~--g~~~~~~~~~~--~~~~~g~~~~~~~-~~-~v~d~~-------~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 96 PVVSLVKSD--GTVETLLTLPD--AIFLNGITPLSDT-QY-LTADSY-------RGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp EEEEEECTT--SCEEEEEECTT--CSCEEEEEESSSS-EE-EEEETT-------TTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred eEEEEcCCC--CeEEEEEeCCC--ccccCcccccCCC-cE-EEEECC-------CCeEEEEeCCCCcEeEEEECCccccc
Confidence 588888776 66655543211 1112333444444 43 444422 25799999987543321 10
Q ss_pred ----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEE
Q 004816 239 ----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 314 (729)
Q Consensus 239 ----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~ 314 (729)
.....++. +|||++|++... ....|++++++.+|+......+... .....+++++||++ |+
T Consensus 163 ~~~~~~~~pngi--s~dg~~lyv~d~-------~~~~I~~~~~~~~g~~~~~~~~~~~-----~~P~gi~vd~dG~l-~v 227 (306)
T 2p4o_A 163 NSESVFPAANGL--KRFGNFLYVSNT-------EKMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNL-YG 227 (306)
T ss_dssp STTCCSCSEEEE--EEETTEEEEEET-------TTTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCE-EE
T ss_pred cccCCCCcCCCc--CcCCCEEEEEeC-------CCCEEEEEEeCCCCCCCccEEEecc-----CCCCCeEECCCCCE-EE
Confidence 11122333 999999987763 2356999999732554333333221 23457899999976 45
Q ss_pred EecCCCceEEEEEEcCCCeEEEe
Q 004816 315 TDRKNGFWNLHKWIESNNEVLAI 337 (729)
Q Consensus 315 ~~~~~g~~~l~~~d~~~g~~~~l 337 (729)
++. +...|.+++++ |+...+
T Consensus 228 a~~--~~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 228 ATH--IYNSVVRIAPD-RSTTII 247 (306)
T ss_dssp ECB--TTCCEEEECTT-CCEEEE
T ss_pred EeC--CCCeEEEECCC-CCEEEE
Confidence 554 34568899986 554433
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.6e-05 Score=81.99 Aligned_cols=240 Identities=8% Similarity=0.071 Sum_probs=132.4
Q ss_pred ceEEEEC--CEEEEEECCCCcEEEEeCCC---CCCCCe-ecC-CCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcc
Q 004816 148 GAFRIFG--DTVIFSNYKDQRLYKHSIDS---KDSSPL-PIT-PDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST 220 (729)
Q Consensus 148 ~~~~~~~--~~i~~~~~~~~~l~~~d~~~---~~~~~~-~lt-~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~ 220 (729)
.+..+++ +.++++...++.|.+|++.+ + ...+ .++ .. ...+...+|+|+++.|+....+
T Consensus 67 ~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~d--------- 132 (437)
T 3gre_A 67 TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-EVYSSSLTYDC----SSTVTQITMIPNFDAFAVSSKD--------- 132 (437)
T ss_dssp EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-CCCSCSEEEEC----SSCEEEEEECTTSSEEEEEETT---------
T ss_pred EEEEECCCCCCEEEEecCCceEEEeECcccccC-cccceeeeccC----CCCEEEEEEeCCCCEEEEEeCC---------
Confidence 3444444 34566666788999999854 1 1111 111 11 2456788999999987766543
Q ss_pred eEEEEEEcC---CCceEEeee-------------CCCeeeee--eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC
Q 004816 221 TEIVAIALN---GQNIQVLVS-------------GSDFYAFP--RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD 282 (729)
Q Consensus 221 ~~l~~~dl~---~g~~~~lt~-------------~~~~~~~~--~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~ 282 (729)
..|.+++++ +++...... ........ .++|||+.|+... ....|.++|+. +++
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~d~~i~iwd~~-~~~ 203 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT--------NLSRVIIFDIR-TLE 203 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE--------TTSEEEEEETT-TCC
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe--------CCCeEEEEeCC-CCe
Confidence 356777763 343332221 11112222 3778999887666 23469999998 666
Q ss_pred eeeeEEecC--CCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee--ccCccccCCcccccCcceee
Q 004816 283 VYKRVCVAG--FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVFGINSYEI 358 (729)
Q Consensus 283 ~~~~~~~~~--~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~~~~~~ 358 (729)
. ...+.. .. ..+..++|+|||+++++... .+ .|.++|+.+++..... .....+....|.+. |
T Consensus 204 ~--~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~ 269 (437)
T 3gre_A 204 R--LQIIENSPRH----GAVSSICIDEECCVLILGTT-RG--IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF-----Y 269 (437)
T ss_dssp E--EEEEECCGGG----CCEEEEEECTTSCEEEEEET-TS--CEEEEETTTTEEEEEEBCTTCEEEEEEEECTT-----T
T ss_pred e--eEEEccCCCC----CceEEEEECCCCCEEEEEcC-CC--eEEEEEcCCccEEEEEecCCCCceEEEEeccc-----c
Confidence 4 334443 33 45678899999985555544 34 4666788777654432 22222323323321 1
Q ss_pred eeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eeccC--------------------------CcceEEeeeeCCEEE
Q 004816 359 IQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIP--------------------------FTDIDNITLGNDCLF 411 (729)
Q Consensus 359 l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt~~--------------------------~~~v~~~~~~~~~~~ 411 (729)
. .++.++++...+|. |.++|+.+++.. .+... ...+..+...++.++
T Consensus 270 s----~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l 343 (437)
T 3gre_A 270 G----KNSVIVVGGSSKTF--LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKIL 343 (437)
T ss_dssp C----TTEEEEEEESTTEE--EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEE
T ss_pred C----CCccEEEEEcCCCc--EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEE
Confidence 1 33445556555554 555577666532 22211 112444422255666
Q ss_pred EEEeCCCCCceEEEEEcCCCcc
Q 004816 412 VEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 412 ~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+.++.. ..++.+|+.+++.
T Consensus 344 ~s~~~d---~~i~~wd~~~~~~ 362 (437)
T 3gre_A 344 LTDEAT---SSIVMFSLNELSS 362 (437)
T ss_dssp EEEGGG---TEEEEEETTCGGG
T ss_pred EecCCC---CeEEEEECCCccc
Confidence 665543 3788889888764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-05 Score=91.34 Aligned_cols=206 Identities=10% Similarity=0.089 Sum_probs=126.0
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCC---CCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAG---DEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~---g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (729)
+.+.++.+++ ++.|||++.. .+ .|++.+.++. +....++... +....+.++.+.++.|+|++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~---~~--~I~~~~l~g~~~~~~~~~vi~~~------l~~P~GLAvD~~~~~LY~tD~~~ 492 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLS---QR--MICSTQLDRAHGVSSYDTVISRD------IQAPDGLAVDWIHSNIYWTDSVL 492 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETT---TT--EEEEEEC--------CEEEECSS------CSCCCEEEEETTTTEEEEEETTT
T ss_pred CceEEEeecccCCeeEEeecc---ce--eEEEEeccCCCCCcceeEEEecC------CCCcceeeeeecCCcEEEEecCC
Confidence 4567888998 8999999863 23 3656555521 1122232211 12223444555577899998888
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFY 243 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~ 243 (729)
++|+++++++ ...+.|.... .....+++++|.+.+|+++.... ...|+++++++...+.|.. +...-
T Consensus 493 ~~I~v~~ldG--~~~~~l~~~~---l~~P~gIaVDp~~g~LYwtD~g~-------~~~I~~~~~dG~~~~~lv~~~l~~P 560 (791)
T 3m0c_C 493 GTVSVADTKG--VKRKTLFREN---GSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLNGVDIYSLVTENIQWP 560 (791)
T ss_dssp TEEEEEETTS--SSEEEEEECT---TCCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCCEEEEECSSCSCE
T ss_pred CeEEEEeCCC--CeEEEEEeCC---CCCcceEEEecCCCCEEEecCCC-------CCeEEEEecCCCceEEEEeCCCCCc
Confidence 8999999987 5555554321 23347889999988877765322 2579999999877766654 33456
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCce
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 322 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~ 322 (729)
.+.+++|++++|||+.. ....|++++++ +... ..+..... .+ .....++ .++. |||+ +. +..
T Consensus 561 ~GLavD~~~~~LYwaD~-------~~~~I~~~d~d-G~~~--~~v~~~~~-~l-~~P~gla--v~~~~lYwt-D~--~~~ 623 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDS-------KLHSISSIDVN-GGNR--KTILEDEK-RL-AHPFSLA--VFEDKVFWT-DI--INE 623 (791)
T ss_dssp EEEEEETTTTEEEEEET-------TTTEEEEEETT-SCSC--EEEEECTT-TT-SSEEEEE--EETTEEEEE-ET--TTT
T ss_pred eEEEEecCCCeEEEEeC-------CCCcEEEEecC-CCce--EEEecCCC-cc-CCCCEEE--EeCCEEEEE-EC--CCC
Confidence 77899999999998863 23569999987 3332 22333211 00 1112233 3444 5544 43 456
Q ss_pred EEEEEEcCCCeE
Q 004816 323 NLHKWIESNNEV 334 (729)
Q Consensus 323 ~l~~~d~~~g~~ 334 (729)
.|+++|..+|+.
T Consensus 624 ~I~~~dk~tG~~ 635 (791)
T 3m0c_C 624 AIFSANRLTGSD 635 (791)
T ss_dssp EEEEEETTTCCC
T ss_pred EEEEEeCCCCcc
Confidence 788888766643
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-05 Score=81.55 Aligned_cols=147 Identities=7% Similarity=-0.030 Sum_probs=90.2
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ- 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~- 234 (729)
..+++...++.|.+||+.+ ++...+.... ....+...+|+|||+.|+....+ ..|.++|+.+++..
T Consensus 140 ~~l~s~s~dg~i~~wd~~~--~~~~~~~~~~--~~~~i~~~~~~pdg~~lasg~~d---------g~i~iwd~~~~~~~~ 206 (343)
T 3lrv_A 140 EYFIWADNRGTIGFQSYED--DSQYIVHSAK--SDVEYSSGVLHKDSLLLALYSPD---------GILDVYNLSSPDQAS 206 (343)
T ss_dssp CEEEEEETTCCEEEEESSS--SCEEEEECCC--SSCCCCEEEECTTSCEEEEECTT---------SCEEEEESSCTTSCC
T ss_pred CEEEEEeCCCcEEEEECCC--CcEEEEEecC--CCCceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCCCCc
Confidence 3455556788999999987 6554433221 12346778999999976654432 46889999987754
Q ss_pred -Eeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe-eeeEEecCCCCCcccccc--CceeCCCC
Q 004816 235 -VLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPT--EPKWSSKG 309 (729)
Q Consensus 235 -~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~-~~~~~~~~~~~~~~~~~~--~~~wspDG 309 (729)
.+.. ........+|||||++|+..+ +. .|.++|+. .++. .....+.... .... .++|+|||
T Consensus 207 ~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~--------~v~iwd~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g 272 (343)
T 3lrv_A 207 SRFPVDEEAKIKEVKFADNGYWMVVEC-DQ--------TVVCFDLR-KDVGTLAYPTYTIPE----FKTGTVTYDIDDSG 272 (343)
T ss_dssp EECCCCTTSCEEEEEECTTSSEEEEEE-SS--------BEEEEETT-SSTTCBSSCCCBC---------CCEEEEECTTS
T ss_pred cEEeccCCCCEEEEEEeCCCCEEEEEe-CC--------eEEEEEcC-CCCcceeeccccccc----ccccceEEEECCCC
Confidence 4544 356677889999999988766 22 49999998 4442 1111111111 1122 38999999
Q ss_pred c-EEEEEecCCCceEEEEEEcC
Q 004816 310 E-LFFVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 310 ~-l~~~~~~~~g~~~l~~~d~~ 330 (729)
+ |+..+.. .+.-.||.++-.
T Consensus 273 ~~l~~~s~~-d~~i~v~~~~~~ 293 (343)
T 3lrv_A 273 KNMIAYSNE-SNSLTIYKFDKK 293 (343)
T ss_dssp SEEEEEETT-TTEEEEEEECTT
T ss_pred CEEEEecCC-CCcEEEEEEccc
Confidence 9 4443332 345556655433
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-05 Score=88.27 Aligned_cols=202 Identities=11% Similarity=0.083 Sum_probs=130.8
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.+.++.+++ ++.+||.+.. .+ .|++.+.+++ ....++..+ +....+.++.+.++.|++++...++|+
T Consensus 38 ~~~~l~~d~~~~~lywtD~~---~~--~I~r~~~~g~-~~~~v~~~g------~~~P~GlAvD~~~~~LY~tD~~~~~I~ 105 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDIS---LK--TISRAFMNGS-ALEHVVEFG------LDYPEGMAVDWLGKNLYWADTGTNRIE 105 (628)
T ss_dssp CEEEEEEETTTTEEEEEETT---TT--EEEEEETTSC-SCEEEECSS------CSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEEEEEECCCCEEEEEECC---CC--eEEEEECCCC-CcEEEEeCC------CCCcceEEEEeCCCEEEEEECCCCEEE
Confidence 456789999 9999999863 23 4677766622 333343322 112234445555789999988888999
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeee
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRM 248 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~ 248 (729)
+.++++ +..+.|.... .....+.+++|....|+++.... ...|+++++++...+.+..+...-.+.++
T Consensus 106 v~~~dG--~~~~~l~~~~---l~~P~~iavdp~~G~lY~tD~g~-------~~~I~r~~~dG~~~~~l~~~~~~P~Glal 173 (628)
T 4a0p_A 106 VSKLDG--QHRQVLVWKD---LDSPRALALDPAEGFMYWTEWGG-------KPKIDRAAMDGSERTTLVPNVGRANGLTI 173 (628)
T ss_dssp EEETTS--TTCEEEECSS---CCCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCSCEEEECSCSSEEEEEE
T ss_pred EEecCC--CcEEEEEeCC---CCCcccEEEccCCCeEEEeCCCC-------CCEEEEEeCCCCceEEEECCCCCcceEEE
Confidence 999987 6555554321 23347888999877777764321 25899999998888887766666778899
Q ss_pred CCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEE
Q 004816 249 DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 249 SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d 328 (729)
++++++|+|+... ...|+.++++ ++.. .++...- .....++... +.+|++ +. ....|+++|
T Consensus 174 D~~~~~LY~aD~~-------~~~I~~~d~d-G~~~---~v~~~~l----~~P~glav~~-~~ly~t-D~--~~~~I~~~d 234 (628)
T 4a0p_A 174 DYAKRRLYWTDLD-------TNLIESSNML-GLNR---EVIADDL----PHPFGLTQYQ-DYIYWT-DW--SRRSIERAN 234 (628)
T ss_dssp ETTTTEEEEEETT-------TTEEEEEETT-SCSC---EEEEECC----SCEEEEEEET-TEEEEE-ET--TTTEEEEEE
T ss_pred ccccCEEEEEECC-------CCEEEEEcCC-CCce---EEeeccC----CCceEEEEEC-CEEEEe-cC--CCCEEEEEE
Confidence 9999999988732 3569999997 3332 2332221 2223444433 335554 43 345788888
Q ss_pred cCCCeE
Q 004816 329 ESNNEV 334 (729)
Q Consensus 329 ~~~g~~ 334 (729)
..+|+.
T Consensus 235 k~tg~~ 240 (628)
T 4a0p_A 235 KTSGQN 240 (628)
T ss_dssp TTTCCS
T ss_pred CCCCCc
Confidence 766643
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-06 Score=97.43 Aligned_cols=211 Identities=9% Similarity=0.067 Sum_probs=125.6
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCC---CCCCcccCCCCCcccccccccCCceEEEECCEEEEEECC
Q 004816 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKA---GDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK 163 (729)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~---~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (729)
...+.++.|++ ++.|||++.. .++ |++++..+ +.....++... +....+.++.+.++.|++++..
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~---~~~--I~~~~~~g~~~~~~~~~~i~~~------~~~P~glavD~~~g~LY~tD~~ 473 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLS---QRM--ICSTQLDRAHGVSSYDTVISRD------IQAPDGLAVDWIHSNIYWTDSV 473 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTT---TTS--BEEEESCCCCC-CCCCCBCCSC------C--CCCEECCCSSSBCEECCTT
T ss_pred CcceEEEccccccCeEEEEecC---CCe--EEEEecCCCCCCcceEEEEeCC------CCCcceEEEEeeCCcEEEEecc
Confidence 35678999999 8999999863 334 45554442 01222222211 1122233344456678888766
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-eCCCe
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-SGSDF 242 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~~~~~ 242 (729)
.+.|+++++++ ...+.+.... .....+++++|++.+|+++.... ...|+++++++...+.+. .....
T Consensus 474 ~~~I~v~d~dg--~~~~~l~~~~---~~~P~giavDp~~g~ly~td~~~-------~~~I~~~~~dG~~~~~l~~~~l~~ 541 (699)
T 1n7d_A 474 LGTVSVADTKG--VKRKTLFREQ---GSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLNGVDIYSLVTENIQW 541 (699)
T ss_dssp TSCEEEEBSSS--CCEEEECCCS---SCCCCCEECCSSSSCCEECCCSS-------SCCEEBCCSSSCCCCEESCSSCSS
T ss_pred CCeEEEEecCC--CceEEEEeCC---CCCcceEEEccCCCcEEEcccCC-------CCeEEEEeCCCCCeeEEEeCCCCC
Confidence 77999999986 5555554331 12346788999888776654221 256999999876555553 33445
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCc
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF 321 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~ 321 (729)
-.+.+|+|++++|+|+... ...|++++++ +... ..+..... .+ .....+.. |+. |||+. . +.
T Consensus 542 PnGlavd~~~~~LY~aD~~-------~~~I~~~d~d-G~~~--~~~~~~~~-~~-~~P~glav--d~~~lywtd-~--~~ 604 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSK-------LHSISSIDVN-GGNR--KTILEDEK-RL-AHPFSLAV--FEDKVFWTD-I--IN 604 (699)
T ss_dssp CCCEEECTTTCCEEEEETT-------TTEEEEECSS-SSCC--EEECCCSS-SC-SSCCCCEE--ETTEEEEEC-S--TT
T ss_pred ccEEEEeccCCEEEEEecC-------CCeEEEEccC-CCce--EEEEecCC-cC-CCceEeEE--ECCEEEEEe-C--CC
Confidence 5678999999999988732 3569999987 3322 22322111 00 22334444 344 66554 3 34
Q ss_pred eEEEEEEcCCCeEEEee
Q 004816 322 WNLHKWIESNNEVLAIY 338 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~ 338 (729)
..|.+++..+|+...++
T Consensus 605 ~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 605 EAIFSANRLTGSDVNLL 621 (699)
T ss_dssp TCEEEEETTTEEEEECC
T ss_pred CeEEEEEccCCCceEEe
Confidence 67999998777655544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00017 Score=75.61 Aligned_cols=131 Identities=8% Similarity=-0.003 Sum_probs=75.5
Q ss_pred CCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCC--CCcEEEEEEe
Q 004816 200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELWVGYI 277 (729)
Q Consensus 200 PdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~--~~~~l~~~d~ 277 (729)
||++++ |+.+..... -....|+++|.++++..........- +..+||||++||........... ....|.++|+
T Consensus 13 ~~~~~~-yv~~~~~~~--~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 13 PQENRI-YVMDSVFMH--LTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp CGGGEE-EEEECCGGG--GGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCCEE-EEECCCCCc--cccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 578875 544322100 00247999999988765433332223 78999999998876531110000 1345889998
Q ss_pred cCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 278 SENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 278 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
+ +++......+......-......+.++|||+.+|+++. .....|.++|+++++...
T Consensus 89 ~-t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~-~~~~~v~v~d~~~~~~~~ 145 (361)
T 2oiz_A 89 D-KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA-SPATSIGIVDVAKGDYVE 145 (361)
T ss_dssp T-TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE-SSSEEEEEEETTTTEEEE
T ss_pred c-CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECC-CCCCeEEEEECCCCcEEE
Confidence 7 66643222222110000023567899999996666665 234678888998886543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.4e-05 Score=91.26 Aligned_cols=205 Identities=9% Similarity=-0.062 Sum_probs=120.6
Q ss_pred ceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 148 ~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
.+++++++ .++.+...++.|++|+..+ .+....... ...+...+|+| |++|+....+ ..|.++
T Consensus 21 ~~lafspdg~~lAsgs~Dg~I~lw~~~~--~~~~~~~~~----~~~V~~l~fsp-g~~L~S~s~D---------~~v~lW 84 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATVTGEVHIYGQQQ--VEVVIKLED----RSAIKEMRFVK-GIYLVVINAK---------DTVYVL 84 (902)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEECSTT--CEEEEECSS----CCCEEEEEEET-TTEEEEEETT---------CEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCC--cEEEEEcCC----CCCEEEEEEcC-CCEEEEEECc---------CeEEEE
Confidence 34455533 4555566788999999876 443322222 24578889999 8866655543 469999
Q ss_pred EcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE---------ecCCCCCcc
Q 004816 227 ALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC---------VAGFDPTIV 297 (729)
Q Consensus 227 dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~---------~~~~~~~~~ 297 (729)
|+.+++..............+|+|||++|+.... ...|.++|+. +++...... ..+..
T Consensus 85 d~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~--------dg~V~lwd~~-~~~~~~~~i~~~~~~~~~~~~h~---- 151 (902)
T 2oaj_A 85 SLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ--------NGSMIVYDID-RDQLSSFKLDNLQKSSFFPAARL---- 151 (902)
T ss_dssp ETTTCSEEEEEECSSCEEEEECCTTCSEEEEEET--------TSCEEEEETT-TTEEEEEEECCHHHHHTCSSSCC----
T ss_pred ECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcC--------CCcEEEEECC-CCccccceeccccccccccccCC----
Confidence 9998875433334456778899999999876652 2348999998 665421111 12222
Q ss_pred ccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCC-------cc---cccCcceeeeeecCCCC
Q 004816 298 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-------LW---VFGINSYEIIQSHGEKN 366 (729)
Q Consensus 298 ~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~-------~w---~~~~~~~~~l~~~~~~~ 366 (729)
..+..++|+|++. ++.+... .+ .+ ++|+.+++...........+.+ .+ ......+.|.+ +++
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~-dg--~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp---dg~ 224 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYE-YV--TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP---NSL 224 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECS-SC--EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT---TSS
T ss_pred CCeEEEEEccCCCCEEEEEeC-CC--cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC---CCC
Confidence 4567789999754 5555544 34 46 7788888755433211000000 00 01123455553 544
Q ss_pred EEEEEEEECCeEEEEEEECCCCceE
Q 004816 367 LIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 367 ~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
++++...+|...|| |+.+++..
T Consensus 225 -~lasgs~Dg~i~lW--d~~~g~~~ 246 (902)
T 2oaj_A 225 -HIITIHEDNSLVFW--DANSGHMI 246 (902)
T ss_dssp -EEEEEETTCCEEEE--ETTTCCEE
T ss_pred -EEEEEECCCeEEEE--ECCCCcEE
Confidence 55666677876666 66666643
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00014 Score=77.93 Aligned_cols=237 Identities=8% Similarity=-0.008 Sum_probs=137.8
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.+.++.|+| |+.++ +.. .++...||....+ +....... +.....++++++. ++.+...++.++
T Consensus 149 ~V~sv~fspdg~~la-sgs---~Dg~v~iWd~~~~---~~~~~~~~--------h~~~v~~~s~~~~-~l~sgs~d~~i~ 212 (420)
T 4gga_A 149 YISSVAWIKEGNYLA-VGT---SSAEVQLWDVQQQ---KRLRNMTS--------HSARVGSLSWNSY-ILSSGSRSGHIH 212 (420)
T ss_dssp CEEEEEECTTSSEEE-EEE---TTSCEEEEETTTT---EEEEEECC--------CSSCEEEEEEETT-EEEEEETTSEEE
T ss_pred cEEEEEECCCCCEEE-EEE---CCCeEEEEEcCCC---cEEEEEeC--------CCCceEEEeeCCC-EEEEEeCCCcee
Confidence 356788888 55443 332 3577777765432 21111111 1222345666665 455556778899
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-----EEeeeCCCee
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-----QVLVSGSDFY 243 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-----~~lt~~~~~~ 243 (729)
+++..........+... ........|+|+|+.++....+ ..+.+++..+++. ..........
T Consensus 213 ~~d~~~~~~~~~~~~~h----~~~~~~~~~~~~g~~l~s~~~D---------~~v~i~~~~~~~~~~~~~~~~~~~~~~V 279 (420)
T 4gga_A 213 HHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRHLASGGND---------NLVNVWPSAPGEGGWVPLQTFTQHQGAV 279 (420)
T ss_dssp EEETTSSSCEEEEEECC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred EeeecccceeeEEeccc----ccceeeeeecCCCCeeeeeecc---------ccceEEeeccccccceeeeeecccCCce
Confidence 99987510112233333 2345677899999987766553 3577888877642 2233334456
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCce
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 322 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~ 322 (729)
...+|+|++..++.+.... ....|.++|+. +++. ...+... ..+....|+++++ ++..+.. ...
T Consensus 280 ~~~~~~p~~~~~la~~~gs-----~D~~I~iwd~~-t~~~--~~~~~~~-----~~v~~~~~~~~~~~lv~~sg~--~d~ 344 (420)
T 4gga_A 280 KAVAWCPWQSNVLATGGGT-----SDRHIRIWNVC-SGAC--LSAVDAH-----SQVCSILWSPHYKELISGHGF--AQN 344 (420)
T ss_dssp EEEEECTTCTTEEEEEECT-----TTCEEEEEETT-TTEE--EEEEECS-----SCEEEEEEETTTTEEEEEECT--TTC
T ss_pred eeeeeCCCcccEEEEEeec-----CCCEEEEEeCC-cccc--ceeeccc-----cceeeeeecCCCCeEEEEEec--CCC
Confidence 6789999988887665322 23469999998 6764 2233332 3345678999999 6555432 234
Q ss_pred EEEEEEcCCCeEEE-eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 323 NLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 323 ~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
.|.++|..+++... +......+... .|.+ +++ ++++...|+...||.+
T Consensus 345 ~I~iwd~~~~~~v~~l~gH~~~V~~l---------~~sp---dg~-~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 345 QLVIWKYPTMAKVAELKGHTSRVLSL---------TMSP---DGA-TVASAAADETLRLWRC 393 (420)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEE---------EECT---TSS-CEEEEETTTEEEEECC
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEE---------EEcC---CCC-EEEEEecCCeEEEEEC
Confidence 57777887776443 33223233333 3432 554 4566777888888854
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.7e-05 Score=75.20 Aligned_cols=200 Identities=9% Similarity=0.007 Sum_probs=118.9
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 169 (729)
.+.++.++|.+.+|..... .+...|...+..+ |+...-++-+ ..+.+..+.++++.++.....++.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~---~~~s~v~~iD~~t-g~v~~~i~l~-------~~~fgeGi~~~g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGL---YGRSSVRQVALQT-GKVENIHKMD-------DSYFGEGLTLLNEKLYQVVWLKNIGFI 90 (266)
T ss_dssp CEEEEEECSTTEEEEEECS---TTTCEEEEEETTT-CCEEEEEECC-------TTCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred CcccEEEeCCCeEEEECCC---CCCCEEEEEECCC-CCEEEEEecC-------CCcceEEEEEeCCEEEEEEecCCEEEE
Confidence 3568999974566665432 2233566666663 3332222211 011233477788899999888899999
Q ss_pred EeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeC--C---Ce
Q 004816 170 HSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSG--S---DF 242 (729)
Q Consensus 170 ~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~--~---~~ 242 (729)
+|.++ .+ ...+..+ .+ ....+++||++++ +++. ...|+++|.++.++. .+.-+ . ..
T Consensus 91 iD~~t--~~v~~~i~~g-~~-----~g~glt~Dg~~l~-vs~g--------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~ 153 (266)
T 2iwa_A 91 YDRRT--LSNIKNFTHQ-MK-----DGWGLATDGKILY-GSDG--------TSILYEIDPHTFKLIKKHNVKYNGHRVIR 153 (266)
T ss_dssp EETTT--TEEEEEEECC-SS-----SCCEEEECSSSEE-EECS--------SSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EECCC--CcEEEEEECC-CC-----CeEEEEECCCEEE-EECC--------CCeEEEEECCCCcEEEEEEECCCCccccc
Confidence 99987 43 3334322 01 1234788999865 5442 257999999997653 34322 1 12
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCC---------CCCccccccCceeCCCCcEEE
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF---------DPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~---------~~~~~~~~~~~~wspDG~l~~ 313 (729)
.+...|. || +|+ +... ...+|.++|.+ ++++.....+.+. ... .....++|+|||+.+|
T Consensus 154 ~nele~~-dg-~ly-vn~~------~~~~V~vID~~-tg~V~~~I~~~g~~~~~~~~~~~~~--~v~nGIa~~~~~~~lf 221 (266)
T 2iwa_A 154 LNELEYI-NG-EVW-ANIW------QTDCIARISAK-DGTLLGWILLPNLRKKLIDEGFRDI--DVLNGIAWDQENKRIF 221 (266)
T ss_dssp EEEEEEE-TT-EEE-EEET------TSSEEEEEETT-TCCEEEEEECHHHHHHHHHTTCTTC--CCEEEEEEETTTTEEE
T ss_pred ceeEEEE-CC-EEE-EecC------CCCeEEEEECC-CCcEEEEEECCCccccccccccccc--CceEEEEEcCCCCEEE
Confidence 3456777 77 565 4422 34579999998 7876443333211 000 1335789999999666
Q ss_pred EEecCCCceEEEEEEcCC
Q 004816 314 VTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~ 331 (729)
++.. .+..|+.+++..
T Consensus 222 VTgk--~~~~v~~i~l~~ 237 (266)
T 2iwa_A 222 VTGK--LWPKLFEIKLHL 237 (266)
T ss_dssp EEET--TCSEEEEEEEEE
T ss_pred EECC--CCCeEEEEEEec
Confidence 6654 567888888754
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.4e-05 Score=82.07 Aligned_cols=209 Identities=12% Similarity=0.068 Sum_probs=120.6
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
..+.++.++| |+++|.....+ .+ .+...|..+ ++...-++-+ +.....+.+...++....++.+
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~--~~--~VsVID~~t-~kvv~~I~v~----------g~~~~~p~g~~~~v~~~~dG~~ 241 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSP--AP--AVGVVDLEG-KTFDRMLDVP----------DCYHIFPASPTVFYMNCRDGSL 241 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSS--SC--EEEEEETTT-TEEEEEEECC----------SEEEEEEEETTEEEEEETTSSE
T ss_pred CCcceEEEcCCCCEEEEEecCC--CC--eEEEEECCC-CeEEEEEEcC----------CceeeccCCCcEEEEEcCCCCE
Confidence 3567899999 77777765321 23 345555541 1211111111 1112334444445555567777
Q ss_pred EEEeCCCCCCCCee-----cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee----
Q 004816 168 YKHSIDSKDSSPLP-----ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS---- 238 (729)
Q Consensus 168 ~~~d~~~~~~~~~~-----lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~---- 238 (729)
..+++.+ ++... +.... ...+..+.++|||++++|+... ..++++|..++..+.+..
T Consensus 242 ~~V~~~~--~~v~~~~~~~~~v~~---~p~~~~~~~~~dg~~~~~~s~~---------g~V~ViD~~~~~~~v~~~~~~~ 307 (426)
T 3c75_H 242 ARVDFAD--GETKVTNTEVFHTED---ELLINHPAFSLRSGRLVWPTYT---------GKIFQADLTAEGATFRAPIEAL 307 (426)
T ss_dssp EEEECCT--TCCEEEECCCCSCTT---SCBCSCCEECTTTCEEEEEBTT---------SEEEEEEECSSCEEECCCEESS
T ss_pred EEEECCC--CcEEEEeeeeeccCC---CceeeEeeecCCCCEEEEEeCC---------CcEEEEeccCCceEEeeeeeec
Confidence 7778755 44331 11110 1122345689999998888532 469999998766544321
Q ss_pred -CC--------CeeeeeeeCCCCCeEEEEEecCC-CC-CCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 239 -GS--------DFYAFPRMDPRGERMAWIEWHHP-NM-PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 239 -~~--------~~~~~~~~SPDG~~la~~~~~~~-~~-~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
.. .......++|||++|+....+.. +. .....+|.++|+. +.+......+. .....+.|+|
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~-T~kvv~~I~vg-------~~P~gia~sp 379 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE-TGERINKIELG-------HEIDSINVSQ 379 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEEE-------EEECEEEECC
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC-CCeEEEEEECC-------CCcCeEEEcc
Confidence 00 11112588999999877653211 10 0023579999998 67653322222 2235789999
Q ss_pred CCc-EEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 308 KGE-LFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 308 DG~-l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
||+ ++|+.+. +...|.++|..+++...
T Consensus 380 Dg~~~lyv~n~--~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 380 DAEPLLYALSA--GTQTLHIYDAATGEELR 407 (426)
T ss_dssp SSSCEEEEEET--TTTEEEEEETTTCCEEE
T ss_pred CCCEEEEEEcC--CCCeEEEEECCCCCEEE
Confidence 999 9998886 45679999999987653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.1e-05 Score=88.13 Aligned_cols=210 Identities=12% Similarity=0.084 Sum_probs=122.5
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE---eeeCCCeeeeeeeCCC--CCeEEEEEecCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV---LVSGSDFYAFPRMDPR--GERMAWIEWHHPNM 265 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~---lt~~~~~~~~~~~SPD--G~~la~~~~~~~~~ 265 (729)
..+..++|+|||++|+....+ ..|.++++.++..+. +....+.....+|+|+ |+.|+..+.
T Consensus 10 ~~V~~l~~s~dg~~latg~~d---------g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~----- 75 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSD---------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY----- 75 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETT---------TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET-----
T ss_pred ceeEEEEECCCCCeEEEEECC---------CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC-----
Confidence 456788999999987766543 457788877543332 3334456778899998 998887662
Q ss_pred CCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC--CcEEEEEecCCCceEEEEEEcCCCe---EEEeecc
Q 004816 266 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK--GELFFVTDRKNGFWNLHKWIESNNE---VLAIYSL 340 (729)
Q Consensus 266 ~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD--G~l~~~~~~~~g~~~l~~~d~~~g~---~~~l~~~ 340 (729)
...|.++|+. +++........... ..+..+.|+|+ |+++++... .| .|.++|+.++. ...+...
T Consensus 76 ---Dg~I~vwd~~-~~~~~~~~~~~~h~----~~V~~v~~sp~~~~~~l~sgs~-dg--~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 76 ---DGKVLIWKEE-NGRWSQIAVHAVHS----ASVNSVQWAPHEYGPLLLVASS-DG--KVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp ---TSCEEEEEEE-TTEEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEET-TS--EEEEEECCSSSCCCCEEEECC
T ss_pred ---CCeEEEEECC-CCcccccccccCCC----CCeEEEEECCCCCCCEEEEEeC-CC--cEEEEEeecCCCcceeEeecC
Confidence 2348899998 66543445555554 56778899999 775555544 34 45556665552 2222222
Q ss_pred CccccCCcccccCc----ceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce---EeeccCCcceEEe-eeeC---CE
Q 004816 341 DAEFSRPLWVFGIN----SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL---SLLDIPFTDIDNI-TLGN---DC 409 (729)
Q Consensus 341 ~~~~~~~~w~~~~~----~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~---~~lt~~~~~v~~~-~~~~---~~ 409 (729)
...+....|.+... ..... .++.++++...+|..++|-+....... ..+......+..+ ..++ +.
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~----~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGT----KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp SSCEEEEEECCCC---------C----GGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred CCceEEEEecCcccccccccccC----CCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 22333333433100 00000 134566677778888888766443222 2334445567777 4444 67
Q ss_pred EEEEEeCCCCCceEEEEEcCCCc
Q 004816 410 LFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 410 ~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+++.++.. ..+..+|+.+++
T Consensus 221 ~l~s~s~D---g~I~iwd~~~~~ 240 (753)
T 3jro_A 221 YLASVSQD---RTCIIWTQDNEQ 240 (753)
T ss_dssp EEEEEESS---SCEEEEEESSSS
T ss_pred EEEEEecC---CEEEEecCCCCC
Confidence 77666644 356667776653
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.25 E-value=3.6e-06 Score=74.11 Aligned_cols=93 Identities=10% Similarity=-0.106 Sum_probs=57.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++.+.... +.|.||++| + .. ..|... ++ ++|.|+++|++|.+.......
T Consensus 10 ~g~~~~~~~~g------------~~~~vv~~H-~--~~--~~~~~~---l~-~~~~v~~~d~~G~G~s~~~~~------- 61 (131)
T 2dst_A 10 YGLNLVFDRVG------------KGPPVLLVA-E--EA--SRWPEA---LP-EGYAFYLLDLPGYGRTEGPRM------- 61 (131)
T ss_dssp TTEEEEEEEEC------------CSSEEEEES-S--SG--GGCCSC---CC-TTSEEEEECCTTSTTCCCCCC-------
T ss_pred CCEEEEEEEcC------------CCCeEEEEc-C--CH--HHHHHH---Hh-CCcEEEEECCCCCCCCCCCCC-------
Confidence 68777654432 136799999 2 21 122222 44 459999999998654322110
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD 593 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~ 593 (729)
. .+++.+.+..+++. ++.+++.++|||+||.+++.++. +|.
T Consensus 62 --~-~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 62 --A-PEELAHFVAGFAVM--MNLGAPWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp --C-HHHHHHHHHHHHHH--TTCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred --C-HHHHHHHHHHHHHH--cCCCccEEEEEChHHHHHHHHHhcCCc
Confidence 0 34444444433333 23468999999999999999998 774
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.3e-05 Score=86.92 Aligned_cols=205 Identities=11% Similarity=0.117 Sum_probs=126.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
..+.++.+++ ++.|||.+.. .+ .|++.+..++.....++..+ +..+.+.++.+.++.|++.+...++|
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~---~~--~I~r~~~~g~~~~~~v~~~~------~~~P~GlAvD~~~~~ly~~d~~~~~I 108 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVS---EE--AIKRTEFNKTESVQNVVVSG------LLSPDGLACDWLGEKLYWTDSETNRI 108 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TT--EEEEEEC-----CEEEECSS------CSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEEEeCCCEEEEEECC---CC--eEEEEEccCCCceEEEEeCC------CCCcCeEEEEecCCEEEEEeCCCCEE
Confidence 4567888999 9999999863 23 36666655221112233222 11223444555577899998888899
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFP 246 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~ 246 (729)
.+.++++ ...+.|.... .....+.+++|.+.+|+++.... ...|++.++++...+.+.. ....-++.
T Consensus 109 ~v~~~dG--~~~~~l~~~~---l~~P~~Iavdp~~g~ly~tD~g~-------~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 109 EVSNLDG--SLRKVLFWQE---LDQPRAIALDPSSGFMYWTDWGE-------VPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp EEEETTS--CSCEEEECSS---CSCCCCEEEETTTTEEEEEECSS-------SCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EEEECCC--CCEEEEEeCC---CCCCceEEEecCCCeEEEeccCC-------CCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 9999987 6555554321 23347889999988877775332 2579999999877766653 34455778
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~ 326 (729)
+++|++++|+|+... ...|++++++ +... ..+..+.- .....+++..| .+|+ ++. +...|++
T Consensus 177 ald~~~~~LY~aD~~-------~~~I~~~~~d-G~~~--~~~~~~~~----~~P~gi~~~~~-~ly~-td~--~~~~V~~ 238 (619)
T 3s94_A 177 TLDYEEQKLYWADAK-------LNFIHKSNLD-GTNR--QAVVKGSL----PHPFALTLFED-ILYW-TDW--STHSILA 238 (619)
T ss_dssp EEETTTTEEEEEETT-------TCCEEEESSS-CCEE--C-------------CCCEEESSS-EEEE-ECT--TTCSEEE
T ss_pred EEEccCCEEEEEeCC-------CCeEEEecCC-CCcc--EEEEeCCC----CCceEEEEeCC-EEEE-ecC--CCCEEEE
Confidence 999999999988632 3459999987 3322 22322221 33445666544 3554 444 4567889
Q ss_pred EEcCCCeE
Q 004816 327 WIESNNEV 334 (729)
Q Consensus 327 ~d~~~g~~ 334 (729)
+|..+|+.
T Consensus 239 ~d~~tg~~ 246 (619)
T 3s94_A 239 CNKYTGEG 246 (619)
T ss_dssp EESSSCCC
T ss_pred EECCCCcc
Confidence 99877754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-05 Score=82.04 Aligned_cols=248 Identities=10% Similarity=-0.036 Sum_probs=130.0
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC---CEEEEEECCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~ 164 (729)
..+..++|+| |+.++- .. .++...||....+ +...+... .-|.....+..++. +.++++...+
T Consensus 14 ~~V~~v~~s~~g~~las-gs---~D~~v~lwd~~~~---~~~~~~~l------~gH~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLAT-CS---SDRSVKIFDVRNG---GQILIADL------RGHEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp CCEEEEEECGGGCEEEE-EE---TTTEEEEEEEETT---EEEEEEEE------ECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred CeEEEeeEcCCCCEEEE-Ee---CCCeEEEEEecCC---CcEEEEEE------cCCCccEEEEEeCCCCCCCEEEEEECC
Confidence 3457889999 665443 32 3577777765432 11111000 00111223344432 3556666678
Q ss_pred CcEEEEeCCCCCCCCe---ecCCCCCCCceeeecceecCC--CCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-Eee-
Q 004816 165 QRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLV- 237 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~SPd--G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt- 237 (729)
+.|.+||+.+ +..+ .+... ...+...+|+|+ |..|+....+ ..|.++++.++... .+.
T Consensus 81 ~~v~iWd~~~--~~~~~~~~~~~h----~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 81 RKVIIWREEN--GTWEKSHEHAGH----DSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp SCEEEECCSS--SCCCEEEEECCC----SSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECSSSCEEECCB
T ss_pred CEEEEEECCC--CcceEEEEccCC----CCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCCCCCcceeee
Confidence 8999999986 5322 22222 244678899998 6766554433 35777788765322 111
Q ss_pred --eCCCeeeeeeeCCCC-----------------CeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccc
Q 004816 238 --SGSDFYAFPRMDPRG-----------------ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 298 (729)
Q Consensus 238 --~~~~~~~~~~~SPDG-----------------~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~ 298 (729)
..........|+|++ +.|+-.+ ....|.++|+...+.......+.+.. .
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs--------~D~~v~lWd~~~~~~~~~~~~l~~h~----~ 213 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG--------CDNLIKLWKEEEDGQWKEEQKLEAHS----D 213 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB--------TTSBCCEEEECTTSCEEEEECCBCCS----S
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEec--------CCCeEEEEEeCCCCccceeeecccCC----C
Confidence 122344567899983 4554332 12346777776222222233445554 5
Q ss_pred cccCceeCCCC----cEEEEEecCCCceEEEEEEcCCC---e--EEEeeccCccccCCcccccCcceeeeeecCCCCEEE
Q 004816 299 SPTEPKWSSKG----ELFFVTDRKNGFWNLHKWIESNN---E--VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA 369 (729)
Q Consensus 299 ~~~~~~wspDG----~l~~~~~~~~g~~~l~~~d~~~g---~--~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~ 369 (729)
.+..++|+||+ ++++.... .+.-.|| ++++. + .+.+.... ...| .+.|.+ +++ ++
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~-D~~v~iw--~~~~~~~~~~~~~~~~~~~----~~v~-----~v~~sp---~g~-~l 277 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQ-DGRVFIW--TCDDASSNTWSPKLLHKFN----DVVW-----HVSWSI---TAN-IL 277 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEET-TCEEEEE--ECSSTTCCCCBCCEEEECS----SCEE-----EEEECT---TTC-CE
T ss_pred ceEEEEecCCCCCCCceEEEEcC-CCeEEEE--EccCccccchhhhhhhcCC----CcEE-----EEEEcC---CCC-EE
Confidence 56778999997 55555544 4554554 55441 1 12222222 2222 234432 444 55
Q ss_pred EEEEECCeEEEEEEECCCCceEee
Q 004816 370 CSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 370 ~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
++...++..+||..+.+ +++..+
T Consensus 278 as~~~D~~v~lw~~~~~-g~~~~~ 300 (316)
T 3bg1_A 278 AVSGGDNKVTLWKESVD-GQWVCI 300 (316)
T ss_dssp EEEESSSCEEEEEECTT-SCEEEE
T ss_pred EEEcCCCeEEEEEECCC-CcEEEe
Confidence 56667888889977654 444433
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00031 Score=72.21 Aligned_cols=236 Identities=11% Similarity=0.063 Sum_probs=127.0
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCC----------------CceeeecceecC-CCCEEEEEEeccCCCCCC
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE----------------PLVSYADGIFDP-RFNRYVTVREDRRQDALN 218 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~----------------~~~~~~~~~~SP-dG~~l~~~~~~~~~~~~~ 218 (729)
.++|+....++|++++.++ +..+.+...... ...+...++++| +|+ |+ +.+..
T Consensus 31 ~~l~v~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~-v~d~~------ 100 (322)
T 2fp8_A 31 KGFYTSVQDGRVIKYEGPN--SGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LY-IVDCY------ 100 (322)
T ss_dssp SSEEEECTTSEEEEECCTT--TCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EE-EEETT------
T ss_pred CEEEEEcCCCeEEEECCCC--CceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EE-EEECC------
Confidence 4567776778899998876 554433211000 001235567888 554 43 43322
Q ss_pred cceEEEEEEcCCCceEEeeeC-----CCeeeeeeeCC-CCCeEEEEEecCCCC----------CCCCcEEEEEEecCCCC
Q 004816 219 STTEIVAIALNGQNIQVLVSG-----SDFYAFPRMDP-RGERMAWIEWHHPNM----------PWDKAELWVGYISENGD 282 (729)
Q Consensus 219 ~~~~l~~~dl~~g~~~~lt~~-----~~~~~~~~~SP-DG~~la~~~~~~~~~----------~~~~~~l~~~d~~~~g~ 282 (729)
..|++++.++++.+.+... .......++.| ||+ |++........ ......|+++|.+ +++
T Consensus 101 --~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~ 176 (322)
T 2fp8_A 101 --YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-TKE 176 (322)
T ss_dssp --TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT-TTE
T ss_pred --CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCC-CCE
Confidence 3489999887766665421 12345678999 986 76665321100 0013569999876 565
Q ss_pred eeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCC---eEEEeeccCccccCCcccccCcceeee
Q 004816 283 VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN---EVLAIYSLDAEFSRPLWVFGINSYEII 359 (729)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g---~~~~l~~~~~~~~~~~w~~~~~~~~~l 359 (729)
... ...+. .....++|++||+.+|+++. +..+|++++++++ +.+.+.... . .+.+.+.
T Consensus 177 ~~~--~~~~~-----~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~~----g------P~gi~~d 237 (322)
T 2fp8_A 177 TTL--LLKEL-----HVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKIP----N------PGNIKRN 237 (322)
T ss_dssp EEE--EEEEE-----SCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEECS----S------EEEEEEC
T ss_pred EEE--eccCC-----ccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeCC----C------CCCeEEC
Confidence 422 22211 23356899999995555554 3467999998763 333332111 1 1233333
Q ss_pred eecCCCCEEEEEEEE--------CCeEEEEEEECCCCceEeeccCC----cceEEeeeeCCEEEEEEeCCCCCceEEEEE
Q 004816 360 QSHGEKNLIACSYRQ--------NGRSYLGILDDFGHSLSLLDIPF----TDIDNITLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 360 ~~~~~~~~l~~~s~~--------~g~~~ly~~d~~~g~~~~lt~~~----~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
.++.||++... .....|++++.++...+.+..+. ..+..+...++.+++.... ...|.+++
T Consensus 238 ----~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~---~~~i~~~~ 310 (322)
T 2fp8_A 238 ----ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF---HGSVGILV 310 (322)
T ss_dssp ----TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSS---CSEEEEEE
T ss_pred ----CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecC---CCceEEEe
Confidence 33456665544 22567999999876666665442 2233443455665554322 23566666
Q ss_pred cCCC
Q 004816 428 LDDH 431 (729)
Q Consensus 428 ~~~~ 431 (729)
++..
T Consensus 311 ~~~~ 314 (322)
T 2fp8_A 311 YDKK 314 (322)
T ss_dssp C---
T ss_pred cccc
Confidence 6543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0001 Score=73.40 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=108.7
Q ss_pred ccCceEEcCCCcEEE-EeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC-CEEEEEECCCCcE
Q 004816 90 RLGGTAVDGHGRLIW-LESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQRL 167 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~-~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l 167 (729)
.+.++.++|.+.+|+ .+. ..+ .|++++.+ + ......... . ......+.++. +.+++... .+.|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~---~~~--~i~~~~~~-~-~~~~~~~~~-~------~~~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEG---MYG--RVVKLATG-S-TGTTVLPFN-G------LYQPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCCEEEEECS---SSC--EEEEECC-------EECCCC-S------CCSCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEECCCCCEEEEccC---CCC--cEEEecCC-C-cccceEeeC-C------cCCcceeEECCCCCEEEEcC-CCEE
Confidence 667888998445776 433 223 35556554 1 222222111 0 01122344443 35666655 6789
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFP 246 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~ 246 (729)
++++.++ +....+.... ........++|||+ | |+.+.. ...|++++..+........ +.....+.
T Consensus 90 ~~~d~~~--~~~~~~~~~~---~~~p~~i~~~~~g~-l-~v~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~p~~i 155 (270)
T 1rwi_B 90 VTLAAGS--NNQTVLPFDG---LNYPEGLAVDTQGA-V-YVADRG-------NNRVVKLAAGSKTQTVLPFTGLNDPDGV 155 (270)
T ss_dssp EEECTTC--SCCEECCCCS---CSSEEEEEECTTCC-E-EEEEGG-------GTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred EEEeCCC--ceEeeeecCC---cCCCcceEECCCCC-E-EEEECC-------CCEEEEEECCCceeEeeccccCCCceeE
Confidence 9999886 5555443221 12346778999998 3 443322 2468888766544433322 22344567
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~ 326 (729)
+++|||+ |++... ....|++++.+ ++.. ........ .....+++++||.+++... +...|++
T Consensus 156 ~~~~~g~-l~v~~~-------~~~~i~~~~~~-~~~~--~~~~~~~~----~~p~~i~~d~~g~l~v~~~---~~~~v~~ 217 (270)
T 1rwi_B 156 AVDNSGN-VYVTDT-------DNNRVVKLEAE-SNNQ--VVLPFTDI----TAPWGIAVDEAGTVYVTEH---NTNQVVK 217 (270)
T ss_dssp EECTTCC-EEEEEG-------GGTEEEEECTT-TCCE--EECCCSSC----CSEEEEEECTTCCEEEEET---TTSCEEE
T ss_pred EEeCCCC-EEEEEC-------CCCEEEEEecC-CCce--EeecccCC----CCceEEEECCCCCEEEEEC---CCCcEEE
Confidence 8999997 655542 13469999876 4432 11111111 2345678999996655543 2346888
Q ss_pred EEcCCCeEEE
Q 004816 327 WIESNNEVLA 336 (729)
Q Consensus 327 ~d~~~g~~~~ 336 (729)
+++++.....
T Consensus 218 ~~~~~~~~~~ 227 (270)
T 1rwi_B 218 LLAGSTTSTV 227 (270)
T ss_dssp ECTTCSCCEE
T ss_pred EcCCCCccee
Confidence 8987765443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00096 Score=67.03 Aligned_cols=277 Identities=11% Similarity=0.043 Sum_probs=144.2
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC-CEEEEEECCCCcEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l~ 168 (729)
.+.++.++|.+.+|+... ..++ |++++.. ++...+.... . ......+..+. +.+++.....+.|+
T Consensus 16 ~~~~i~~d~~g~l~v~~~---~~~~--v~~~d~~--~~~~~~~~~~-~------~~~~~~i~~~~~g~l~v~~~~~~~i~ 81 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQH---KANM--ISCINLD--GKITEYPLPT-P------DAKVMCLTISSDGEVWFTENAANKIG 81 (299)
T ss_dssp CEEEEEECTTSCEEEEET---TTTE--EEEECTT--CCEEEEECSS-T------TCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CccceEECCCCCEEEEec---CCCc--EEEEcCC--CCeEEecCCc-c------cCceeeEEECCCCCEEEeCCCCCeEE
Confidence 567788887556666543 1233 5555544 2332222110 0 01112234433 35666665567899
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee--CCCeeeee
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS--GSDFYAFP 246 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~--~~~~~~~~ 246 (729)
+++.++ ..+.+.... .........++|||+. ++.... ...|++++. +++...+.. ......+.
T Consensus 82 ~~~~~g---~~~~~~~~~--~~~~~~~i~~~~~g~l-~v~~~~--------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 82 RITKKG---IIKEYTLPN--PDSAPYGITEGPNGDI-WFTEMN--------GNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EECTTS---CEEEEECSS--TTCCEEEEEECTTSCE-EEEETT--------TTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EECCCC---cEEEEeCCC--cCCCceeeEECCCCCE-EEEecC--------CceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 999863 344333110 0234567789999973 333221 146999998 566555432 22345677
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~ 326 (729)
+++|||+ |++... ....|+++|. +++.... ...... ..+..+.+++||++++.... ...|++
T Consensus 147 ~~~~~g~-l~v~~~-------~~~~i~~~~~--~g~~~~~-~~~~~~----~~~~~i~~~~~g~l~v~~~~---~~~i~~ 208 (299)
T 2z2n_A 147 TLGSDNA-LWFTEN-------QNNAIGRITE--SGDITEF-KIPTPA----SGPVGITKGNDDALWFVEII---GNKIGR 208 (299)
T ss_dssp EECTTSC-EEEEET-------TTTEEEEECT--TCCEEEE-ECSSTT----CCEEEEEECTTSSEEEEETT---TTEEEE
T ss_pred EEcCCCC-EEEEeC-------CCCEEEEEcC--CCcEEEe-eCCCCC----CcceeEEECCCCCEEEEccC---CceEEE
Confidence 8999996 555542 2345888886 3554321 122222 33456788899886655432 346889
Q ss_pred EEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC--CcceEEee
Q 004816 327 WIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--FTDIDNIT 404 (729)
Q Consensus 327 ~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~--~~~v~~~~ 404 (729)
+|+ +++.+.+.... .... ...+.+. .++.+++... +...|++++.+ ++.+.+..+ ...+..+.
T Consensus 209 ~~~-~g~~~~~~~~~-~~~~------~~~i~~~----~~g~l~v~~~--~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~ 273 (299)
T 2z2n_A 209 ITT-SGEITEFKIPT-PNAR------PHAITAG----AGIDLWFTEW--GANKIGRLTSN-NIIEEYPIQIKSAEPHGIC 273 (299)
T ss_dssp ECT-TCCEEEEECSS-TTCC------EEEEEEC----STTCEEEEET--TTTEEEEEETT-TEEEEEECSSSSCCEEEEE
T ss_pred ECC-CCcEEEEECCC-CCCC------ceeEEEC----CCCCEEEecc--CCceEEEECCC-CceEEEeCCCCCCccceEE
Confidence 998 66655542110 1111 1233333 3345665542 33468888884 565555322 23455553
Q ss_pred eeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 405 LGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.+++.+++... ...++++++++++
T Consensus 274 ~~~g~l~v~~~----~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 274 FDGETIWFAME----CDKIGKLTLIKDN 297 (299)
T ss_dssp ECSSCEEEEET----TTEEEEEEEC---
T ss_pred ecCCCEEEEec----CCcEEEEEcCccc
Confidence 35555554432 2467888776654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.22 E-value=6.5e-05 Score=73.31 Aligned_cols=197 Identities=10% Similarity=-0.018 Sum_probs=110.6
Q ss_pred EEECCEEEEEECCCC--cEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 151 RIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 151 ~~~~~~i~~~~~~~~--~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
.++++.++.+....+ .|.++|+++ ++.. .+.-. .++..--+.++|++|+...... ..++++|
T Consensus 49 ~~~~~~LyestG~~g~S~v~~vD~~T--gkv~~~~~l~-----~~~FgeGit~~g~~ly~ltw~~--------~~v~v~D 113 (262)
T 3nol_A 49 FYRNGYFYESTGLNGRSSIRKVDIES--GKTLQQIELG-----KRYFGEGISDWKDKIVGLTWKN--------GLGFVWN 113 (262)
T ss_dssp EEETTEEEEEEEETTEEEEEEECTTT--CCEEEEEECC-----TTCCEEEEEEETTEEEEEESSS--------SEEEEEE
T ss_pred EEECCEEEEECCCCCCceEEEEECCC--CcEEEEEecC-----CccceeEEEEeCCEEEEEEeeC--------CEEEEEE
Confidence 345667777766554 899999998 6543 33222 1112222566788876664432 6799999
Q ss_pred cCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 228 LNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 228 l~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
.++.+.. ++.-+. .+...++||++|+... . ...|+++|.+ +.+........... .-...+..+.|.
T Consensus 114 ~~t~~~~~ti~~~~---eG~glt~dg~~L~~Sd--G------s~~i~~iDp~-T~~v~~~I~V~~~g-~~~~~lNELe~~ 180 (262)
T 3nol_A 114 IRNLRQVRSFNYDG---EGWGLTHNDQYLIMSD--G------TPVLRFLDPE-SLTPVRTITVTAHG-EELPELNELEWV 180 (262)
T ss_dssp TTTCCEEEEEECSS---CCCCEEECSSCEEECC--S------SSEEEEECTT-TCSEEEEEECEETT-EECCCEEEEEEE
T ss_pred CccCcEEEEEECCC---CceEEecCCCEEEEEC--C------CCeEEEEcCC-CCeEEEEEEeccCC-ccccccceeEEE
Confidence 9987764 443322 3345678998875433 2 2459999988 66643222221111 000122346786
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccc-----cCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEE
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF-----SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 381 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~-----~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly 381 (729)
||+|| .... ....|.++|+++|++....+...-. ..+. ....+.+++.+ +.++||++. ..+..||
T Consensus 181 -~G~ly-an~w--~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~-~~vlNGIA~dp---~~~~lfVTG--K~Wp~~~ 250 (262)
T 3nol_A 181 -DGEIF-ANVW--QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSP-IDVLNGIAWDK---EHHRLFVTG--KLWPKVF 250 (262)
T ss_dssp -TTEEE-EEET--TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSS-CCCEEEEEEET---TTTEEEEEE--TTCSEEE
T ss_pred -CCEEE-EEEc--cCCeEEEEECCCCcEEEEEECCcCccccccccCc-CCceEEEEEcC---CCCEEEEEC--CCCCceE
Confidence 78755 4433 2358999999999987655332110 0010 01123455654 566777665 4556777
Q ss_pred EEEC
Q 004816 382 ILDD 385 (729)
Q Consensus 382 ~~d~ 385 (729)
.+.+
T Consensus 251 ev~~ 254 (262)
T 3nol_A 251 EITL 254 (262)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6643
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.20 E-value=7.9e-06 Score=93.50 Aligned_cols=223 Identities=9% Similarity=0.018 Sum_probs=129.3
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC----CceEEee-eC
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----QNIQVLV-SG 239 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~----g~~~~lt-~~ 239 (729)
..|+++++++ .....+... ......+.|+++++.|+++... ...|+++++++ .....+. .+
T Consensus 386 ~~I~~id~~~--~~~~~~~~~----~~~p~gla~d~~~~~Ly~sD~~--------~~~I~~~~~~g~~~~~~~~~~i~~~ 451 (699)
T 1n7d_A 386 HEVRKMTLDR--SEYTSLIPN----LRNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSSYDTVISRD 451 (699)
T ss_dssp TC-CEECTTS--CCEECCSCC----CTTCCCCEEETTTTEEEECCTT--------TTSBEEEESCCCCC-CCCCCBCCSC
T ss_pred cceEEEeCCC--Ccceeeecc----CcceEEEccccccCeEEEEecC--------CCeEEEEecCCCCCCcceEEEEeCC
Confidence 4689999987 555554433 1233677899988887665332 24699999986 2333332 22
Q ss_pred CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecC
Q 004816 240 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 318 (729)
Q Consensus 240 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~ 318 (729)
.....+.++.+.++.|+|+... ...|++++++ +... ..++.... .....++++|++. |||+ +.
T Consensus 452 ~~~P~glavD~~~g~LY~tD~~-------~~~I~v~d~d-g~~~--~~l~~~~~----~~P~giavDp~~g~ly~t-d~- 515 (699)
T 1n7d_A 452 IQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTK-GVKR--KTLFREQG----SKPRAIVVDPVHGFMYWT-DW- 515 (699)
T ss_dssp C--CCCEECCCSSSBCEECCTT-------TSCEEEEBSS-SCCE--EEECCCSS----CCCCCEECCSSSSCCEEC-CC-
T ss_pred CCCcceEEEEeeCCcEEEEecc-------CCeEEEEecC-CCce--EEEEeCCC----CCcceEEEccCCCcEEEc-cc-
Confidence 2334567888878888876522 3458999887 3332 22333221 3446778888766 6554 43
Q ss_pred CCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC--
Q 004816 319 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP-- 396 (729)
Q Consensus 319 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~-- 396 (729)
.....|+++++++...+.+.... + .| .+.+.+.+ +++.|||+. .+...|+++++++...+.+...
T Consensus 516 ~~~~~I~~~~~dG~~~~~l~~~~--l---~~---PnGlavd~---~~~~LY~aD--~~~~~I~~~d~dG~~~~~~~~~~~ 582 (699)
T 1n7d_A 516 GTPAKIKKGGLNGVDIYSLVTEN--I---QW---PNGITLDL---LSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEK 582 (699)
T ss_dssp SSSCCEEBCCSSSCCCCEESCSS--C---SS---CCCEEECT---TTCCEEEEE--TTTTEEEEECSSSSCCEEECCCSS
T ss_pred CCCCeEEEEeCCCCCeeEEEeCC--C---CC---ccEEEEec---cCCEEEEEe--cCCCeEEEEccCCCceEEEEecCC
Confidence 22367999988776555544221 1 11 12344432 567788876 3455789999988766655432
Q ss_pred -CcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 397 -FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 397 -~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
......+..+++.+|+... ....|++++..+|+.
T Consensus 583 ~~~~P~glavd~~~lywtd~---~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 583 RLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGSD 617 (699)
T ss_dssp SCSSCCCCEEETTEEEEECS---TTTCEEEEETTTEEE
T ss_pred cCCCceEeEEECCEEEEEeC---CCCeEEEEEccCCCc
Confidence 1222344455666655542 235788888776653
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=98.19 E-value=7.6e-06 Score=85.63 Aligned_cols=98 Identities=12% Similarity=0.052 Sum_probs=62.2
Q ss_pred CEEEEEcCCCCCCcc-----ccch----hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHH--
Q 004816 493 PLLVKSHGGPTSEAR-----GILN----LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF-- 561 (729)
Q Consensus 493 P~vv~~hGg~~~~~~-----~~~~----~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~-- 561 (729)
|.||++||..+.... ..|. .+++.|+++||.|+++|++|.+ ..... ..++...++.
T Consensus 7 ~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g~G---~s~~~----------a~~l~~~i~~~~ 73 (387)
T 2dsn_A 7 APIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLS---SNWDR----------ACEAYAQLVGGT 73 (387)
T ss_dssp CCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCSSB---CHHHH----------HHHHHHHHHCEE
T ss_pred CcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCCCC---Ccccc----------HHHHHHHHHhhh
Confidence 458889997543211 2343 3448888999999999999643 22211 1112222210
Q ss_pred ------HH----------------hCCCCCCCcEEEEEcChHHHHHHHHHh--------------------CC------C
Q 004816 562 ------LV----------------GSGKADEKRLCITGGSAGGYTTLAALA--------------------FR------D 593 (729)
Q Consensus 562 ------l~----------------~~~~~d~~ri~i~G~S~GG~~a~~~~~--------------------~~------~ 593 (729)
+. +. ....+++.|+||||||.++..++. +| +
T Consensus 74 vDy~~~~a~~~~~~~~~~~l~~ll~~-~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~~ 152 (387)
T 2dsn_A 74 VDYGAAHAAKHGHARFGRTYPGLLPE-LKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGHH 152 (387)
T ss_dssp EECCHHHHHHHTSCSEEEEECCSCGG-GGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCC
T ss_pred hhhhhhhhhhccchhhhhhHHHHHHH-hcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCcccccccc
Confidence 00 00 023478999999999999988885 35 7
Q ss_pred cceEEEEeccc
Q 004816 594 TFKAGASLYGV 604 (729)
Q Consensus 594 ~~~a~v~~~~~ 604 (729)
+++.+|++++.
T Consensus 153 ~V~sLV~i~tP 163 (387)
T 2dsn_A 153 FVLSVTTIATP 163 (387)
T ss_dssp CEEEEEEESCC
T ss_pred ceeEEEEECCC
Confidence 89999998764
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.3e-05 Score=81.03 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=97.3
Q ss_pred EEEEEECCC--C--cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEecc--CC------C--CCCcce
Q 004816 156 TVIFSNYKD--Q--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR--RQ------D--ALNSTT 221 (729)
Q Consensus 156 ~i~~~~~~~--~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~--~~------~--~~~~~~ 221 (729)
.|+.++... . .||.++.++ +..+.+..-.+..-.+.+|..+.|||+++ +.... .+ + ......
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~--~~~~~~~~~~g~~~~~pND~~v~~~G~fy--vt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEE--KSLLHLKTIRHKLLPSVNDIVAVGPEHFY--ATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTT--TEEEEEEEECCTTCSSEEEEEEEETTEEE--EEESCSCSSHHHHHHHHHTTCCCE
T ss_pred EEEEEECCCCCCeEEEEEEECCC--CEEEEEeccccCCCCCCceEEEeCCCCEE--ecCCcEeCCcccccchhhccCCcc
Confidence 455554442 2 578888765 44444433222223567899999999853 22221 00 0 011247
Q ss_pred EEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 222 EIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
.||+++. ++.+.+..+..+.++.+|||||++|+++... ...|++++++.+|++.+.+.+ ... ....
T Consensus 204 ~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~-------~~~I~~~~~~~~g~l~~~~~~-~~~----g~PD 269 (355)
T 3sre_A 204 FVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELL-------AHKIHVYEKHANWTLTPLRVL-SFD----TLVD 269 (355)
T ss_dssp EEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEE-ECS----SEEE
T ss_pred EEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCC-------CCeEEEEEECCCCcEecCEEE-eCC----CCCc
Confidence 8999987 4677777777788999999999999888743 356999999756777666655 333 5556
Q ss_pred CceeCC-CCcEEEEEecCCCceEEEEEEcC
Q 004816 302 EPKWSS-KGELFFVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 302 ~~~wsp-DG~l~~~~~~~~g~~~l~~~d~~ 330 (729)
.++..+ ||.++..... +..++.+++++
T Consensus 270 Gi~vD~e~G~lwva~~~--~g~~v~~~~P~ 297 (355)
T 3sre_A 270 NISVDPVTGDLWVGCHP--NGMRIFFYDAE 297 (355)
T ss_dssp EEEECTTTCCEEEEEES--CHHHHHSCCTT
T ss_pred eEEEeCCCCcEEEEecC--CceEEEEECCC
Confidence 788888 5886665543 23345555554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.2e-05 Score=77.96 Aligned_cols=212 Identities=13% Similarity=0.054 Sum_probs=109.7
Q ss_pred CcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEe-c------cCCCCC----CcceEEEEEEcCCCc
Q 004816 165 QRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVRE-D------RRQDAL----NSTTEIVAIALNGQN 232 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~-~------~~~~~~----~~~~~l~~~dl~~g~ 232 (729)
+.|.++|.++ .+.. ++..+.. +.....++.|+||++. +++++ . .+..+. .....|.++|+++++
T Consensus 164 g~v~vlD~~T--~~v~~~~~~~~~-~~~~~Yd~~~~p~~~~-mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 164 GGILMLDHYS--FEPLGKWEIDRG-DQYLAYDFWWNLPNEV-LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp CEEEEECTTT--CCEEEECCSBCT-TCCCCCCEEEETTTTE-EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CeEEEEECCC--CeEEEEEccCCC-CccccceEEECCCCCE-EEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 5899999987 5533 3332211 1122246789999995 45543 1 000000 124789999999876
Q ss_pred eEE-eeeCCCeeee-----eeeCCCCCeEEEEEe-cCCCCCCCCcEEEEEEecCCCCeeeeEEe--cCCCCCc-------
Q 004816 233 IQV-LVSGSDFYAF-----PRMDPRGERMAWIEW-HHPNMPWDKAELWVGYISENGDVYKRVCV--AGFDPTI------- 296 (729)
Q Consensus 233 ~~~-lt~~~~~~~~-----~~~SPDG~~la~~~~-~~~~~~~~~~~l~~~d~~~~g~~~~~~~~--~~~~~~~------- 296 (729)
..+ +.-+.. ... +.++|||++++.+.. +... ...+|+++..+ +|+......+ ......+
T Consensus 240 ~~~tI~vg~~-g~~P~~i~f~~~Pdg~~aYV~~e~~~~~---Lss~V~v~~~d-~g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 240 RIHSLTLGEE-NRMALELRPLHDPTKLMGFINMVVSLKD---LSSSIWLWFYE-DGKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp EEEEEESCTT-EEEEEEEEECSSTTCCEEEEEEEEETTT---CCEEEEEEEEE-TTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred EeeEEecCCC-CCccceeEeeECCCCCEEEEEEeeeccC---CCceEEEEEec-CCceeEEEEEeCCCcccccccccccc
Confidence 543 332211 122 346999997765542 1111 13468777766 4654333221 1100000
Q ss_pred -----cccccCceeCCCCcEEEEEecCCCceEEEEEEcC-CCeEEEee--ccCccccCCcc------cccCcceeeeeec
Q 004816 297 -----VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEVLAIY--SLDAEFSRPLW------VFGINSYEIIQSH 362 (729)
Q Consensus 297 -----~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~-~g~~~~l~--~~~~~~~~~~w------~~~~~~~~~l~~~ 362 (729)
......+..|+||+.+|++++ +...|.++|.. .++.+.+. .-.+.+..+.+ ..+...+.+.+
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-- 390 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-- 390 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT--
T ss_pred ccccCCCceeEEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC--
Confidence 023567889999997778877 44567777753 33333222 11111100010 11235566665
Q ss_pred CCCCEEEEEEE-----------ECCeEEEEEE--ECCCCceE
Q 004816 363 GEKNLIACSYR-----------QNGRSYLGIL--DDFGHSLS 391 (729)
Q Consensus 363 ~~~~~l~~~s~-----------~~g~~~ly~~--d~~~g~~~ 391 (729)
|++++|++.. +.....++.+ |.++| ++
T Consensus 391 -DGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~ 430 (462)
T 2ece_A 391 -DGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LE 430 (462)
T ss_dssp -TSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EE
T ss_pred -CCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ce
Confidence 7888887762 2233456644 66666 44
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.1e-05 Score=89.74 Aligned_cols=204 Identities=9% Similarity=-0.021 Sum_probs=118.8
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 271 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 271 (729)
.+...+|||||+.|+....+ ..|++++..+++..............+|+| |++|+-.+ ....
T Consensus 19 ~V~~lafspdg~~lAsgs~D---------g~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s--------~D~~ 80 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVT---------GEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVIN--------AKDT 80 (902)
T ss_dssp CEEEEEEETTTTEEEEEETT---------SEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEE--------TTCE
T ss_pred CcEEEEECCCCCEEEEEeCC---------CEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEE--------CcCe
Confidence 35778999999987765543 468888988765544434445677889999 88777665 2345
Q ss_pred EEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCcc---ccCCc
Q 004816 272 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE---FSRPL 348 (729)
Q Consensus 272 l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~---~~~~~ 348 (729)
|.++|+. +++. ...+. .. ..+..+.|+|||+++++... .| .|.++|+++++.....-.... .....
T Consensus 81 v~lWd~~-~~~~--~~~~~-~~----~~V~~v~~sp~g~~l~sgs~-dg--~V~lwd~~~~~~~~~~i~~~~~~~~~~~~ 149 (902)
T 2oaj_A 81 VYVLSLY-SQKV--LTTVF-VP----GKITSIDTDASLDWMLIGLQ-NG--SMIVYDIDRDQLSSFKLDNLQKSSFFPAA 149 (902)
T ss_dssp EEEEETT-TCSE--EEEEE-CS----SCEEEEECCTTCSEEEEEET-TS--CEEEEETTTTEEEEEEECCHHHHHTCSSS
T ss_pred EEEEECC-CCcE--EEEEc-CC----CCEEEEEECCCCCEEEEEcC-CC--cEEEEECCCCccccceecccccccccccc
Confidence 9999998 6664 22332 22 45677899999995555544 34 456668888765322100000 00000
Q ss_pred ccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eeccC------------------CcceEEe-eeeCC
Q 004816 349 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIP------------------FTDIDNI-TLGND 408 (729)
Q Consensus 349 w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt~~------------------~~~v~~~-~~~~~ 408 (729)
-......+.|.| ++..++++...+|.. ++|+.+++.. .+... ...|..+ ..+++
T Consensus 150 h~~~V~sl~~sp---~~~~~l~~g~~dg~v---lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg 223 (902)
T 2oaj_A 150 RLSPIVSIQWNP---RDIGTVLISYEYVTL---TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS 223 (902)
T ss_dssp CCCCCCEEEEET---TEEEEEEEECSSCEE---EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS
T ss_pred CCCCeEEEEEcc---CCCCEEEEEeCCCcE---EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC
Confidence 001123445543 444555566666654 4577776643 23211 1346666 44455
Q ss_pred EEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 409 CLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 409 ~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.+++.++.. ..+.++|+.+++.
T Consensus 224 ~~lasgs~D---g~i~lWd~~~g~~ 245 (902)
T 2oaj_A 224 LHIITIHED---NSLVFWDANSGHM 245 (902)
T ss_dssp SEEEEEETT---CCEEEEETTTCCE
T ss_pred CEEEEEECC---CeEEEEECCCCcE
Confidence 566665544 3577788877764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-05 Score=87.65 Aligned_cols=153 Identities=10% Similarity=-0.058 Sum_probs=92.2
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecc--eecCCC-CEEEEEEeccCCCCCCcceE
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADG--IFDPRF-NRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~--~~SPdG-~~l~~~~~~~~~~~~~~~~~ 222 (729)
..+++++++..+++...++.|.+||+.++ ..+. .+... ...+..+ .|+|+| +.|+-...+ ..
T Consensus 269 v~sv~~s~~~~lasgs~DgtV~lWD~~~~-~~~~~~~~~H----~~~V~sv~~~~s~~g~~~laS~S~D---------~t 334 (524)
T 2j04_B 269 ITTFDFLSPTTVVCGFKNGFVAEFDLTDP-EVPSFYDQVH----DSYILSVSTAYSDFEDTVVSTVAVD---------GY 334 (524)
T ss_dssp EEEEEESSSSEEEEEETTSEEEEEETTBC-SSCSEEEECS----SSCEEEEEEECCTTSCCEEEEEETT---------SE
T ss_pred EEEEEecCCCeEEEEeCCCEEEEEECCCC-CCceEEeecc----cccEEEEEEEcCCCCCeEEEEeccC---------Ce
Confidence 34455555545677778899999999861 2222 23333 2345665 579998 654444433 46
Q ss_pred EEEEEcCCCce-EEeeeCC--CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 223 IVAIALNGQNI-QVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 223 l~~~dl~~g~~-~~lt~~~--~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
|.++|+.+++. ..+.... ......+|||||+.|+..+. ...|.++|+. ++.. ...+.+.. ..
T Consensus 335 vklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~--------d~tv~lwd~~-~~~~--~~~l~gH~----~~ 399 (524)
T 2j04_B 335 FYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG--------ASSLRAVPSR-AAFA--VHPLVSRE----TT 399 (524)
T ss_dssp EEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECS--------SSEEEEEETT-CTTC--CEEEEECS----SC
T ss_pred EEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCC--------CCcEEEEECc-cccc--ceeeecCC----Cc
Confidence 88889877543 2232211 12456799999998765441 2348888987 5653 23344554 56
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCC
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~ 331 (729)
+..++|||||++++.... .+. +.++|+..
T Consensus 400 V~sva~Sp~g~~l~Sgs~-Dgt--v~lwd~~~ 428 (524)
T 2j04_B 400 ITAIGVSRLHPMVLAGSA-DGS--LIITNAAR 428 (524)
T ss_dssp EEEEECCSSCCBCEEEET-TTE--EECCBSCS
T ss_pred eEEEEeCCCCCeEEEEEC-CCE--EEEEechH
Confidence 778899999994444444 354 44456544
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00017 Score=73.53 Aligned_cols=231 Identities=9% Similarity=0.018 Sum_probs=120.9
Q ss_pred CCCCcEEEEeCCCCCCCCeecCCCC-CCCceeeecceecCC-CCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe-ee
Q 004816 162 YKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL-VS 238 (729)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~SPd-G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l-t~ 238 (729)
..++.|+++++.+ ++.+.+.... ...........++|| |+ |++.... ..|++++.+ ++.+.+ ..
T Consensus 43 ~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~---------~~l~~~d~~-g~~~~~~~~ 109 (314)
T 1pjx_A 43 KPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMR---------LGLLVVQTD-GTFEEIAKK 109 (314)
T ss_dssp EECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETT---------TEEEEEETT-SCEEECCSB
T ss_pred CCCCEEEEEeCCC--CcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECC---------CCEEEEeCC-CCEEEEEec
Confidence 3456899999877 6666554310 000123467789999 65 4443321 369999998 777766 43
Q ss_pred CC-----CeeeeeeeCCCCCeEEEEEecCC--------CCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 239 GS-----DFYAFPRMDPRGERMAWIEWHHP--------NMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 239 ~~-----~~~~~~~~SPDG~~la~~~~~~~--------~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
.. .......++|||+ |++...... ........|++++.+ ++... ..... .....+.|
T Consensus 110 ~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~--~~~~~-----~~~~~i~~ 179 (314)
T 1pjx_A 110 DSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQ--VDTAF-----QFPNGIAV 179 (314)
T ss_dssp CTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEE--EEEEE-----SSEEEEEE
T ss_pred cCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC--CCEEE--eccCC-----CCcceEEE
Confidence 21 2245678999997 555553210 000012468888754 44322 22211 22346789
Q ss_pred C----CCCcEEEEEecCCCceEEEEEEcC-CCeEEE---eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 306 S----SKGELFFVTDRKNGFWNLHKWIES-NNEVLA---IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 306 s----pDG~l~~~~~~~~g~~~l~~~d~~-~g~~~~---l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
+ +||+.+|..+. ....|++++++ +++... +....... .. ....+.+. .++.+++....++
T Consensus 180 ~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~---~p~~i~~d----~~G~l~v~~~~~~- 247 (314)
T 1pjx_A 180 RHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTH--EG---GADGMDFD----EDNNLLVANWGSS- 247 (314)
T ss_dssp EECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCS--SC---EEEEEEEB----TTCCEEEEEETTT-
T ss_pred ecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCC--CC---CCCceEEC----CCCCEEEEEcCCC-
Confidence 9 99984444443 23468888865 454321 11111000 00 11223333 3445665554333
Q ss_pred EEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 378 SYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 378 ~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
.|++++.++++ ...+..+...+..+ ..+++..+++++.. ...|++++++.
T Consensus 248 -~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~--~~~l~~~~~~~ 299 (314)
T 1pjx_A 248 -HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE--NNAVWKFEWQR 299 (314)
T ss_dssp -EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT--TTEEEEEECSS
T ss_pred -EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC--CCeEEEEeCCC
Confidence 68888988444 44454444445555 33344434444432 24688888764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00041 Score=71.48 Aligned_cols=158 Identities=10% Similarity=0.079 Sum_probs=90.6
Q ss_pred EEEEEECCCCcEEEEeCCCCCC--CCeecCCC----C-CCCceeeecceecC-CCCEEEEEEec-cCCCCCCcceEEEEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDS--SPLPITPD----Y-GEPLVSYADGIFDP-RFNRYVTVRED-RRQDALNSTTEIVAI 226 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~--~~~~lt~~----~-~~~~~~~~~~~~SP-dG~~l~~~~~~-~~~~~~~~~~~l~~~ 226 (729)
.++++....+.|++++.++ . ....+... . .........++++| +|+ |+ +.+. . ...|+++
T Consensus 103 ~l~v~d~~~~~v~~~~~~g--~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-ly-v~d~~~-------~~~I~~~ 171 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHS--KEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VF-VSDGYC-------NSRIVQF 171 (329)
T ss_dssp CEEEEETTTTEEEEECTTC--SSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EE-EEECSS-------CCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCC--CeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EE-EEeCCC-------CCeEEEE
Confidence 5777776777999999875 4 33333210 0 00112346788999 565 44 4332 1 2579999
Q ss_pred EcCCCceEEeee-CC---------CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 227 ALNGQNIQVLVS-GS---------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 227 dl~~g~~~~lt~-~~---------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
+.++...+.+.. +. ....+.+++||+..|+++.. .+..|.+++.+ +|+. +..+......
T Consensus 172 ~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~-------~~~~I~~~~~~-~G~~--~~~~~~~~~~- 240 (329)
T 3fvz_A 172 SPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR-------ENGRIQCFKTD-TKEF--VREIKHASFG- 240 (329)
T ss_dssp CTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET-------TTTEEEEEETT-TCCE--EEEECCTTTT-
T ss_pred cCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC-------CCCEEEEEECC-CCcE--EEEEeccccC-
Confidence 976544444432 21 12456789999777876663 23569999987 6775 3333221101
Q ss_pred cccccCceeCCCCcEEEEEecC-----CCceEEEEEEcCCCeEEEee
Q 004816 297 VESPTEPKWSSKGELFFVTDRK-----NGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 297 ~~~~~~~~wspDG~l~~~~~~~-----~g~~~l~~~d~~~g~~~~l~ 338 (729)
.....+.++| | +++..+.. .+...+++++..+++.....
T Consensus 241 -~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 241 -RNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp -TCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred -CCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 2344567888 4 33333320 12347889998888765544
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00093 Score=65.49 Aligned_cols=207 Identities=11% Similarity=0.057 Sum_probs=116.2
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
.....+|+||+++|+.+.+.. ..|+.+|++ |++ +.+. .+.....+.++.+||+ ++ ++..+ .
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~--------~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~-vs~E~------~ 90 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKP--------AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FV-ISDER------D 90 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETT--------EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EE-EEETT------T
T ss_pred CcceeEEeCCCCEEEEEECCC--------CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EE-EEECC------C
Confidence 468889999999988877753 679999998 554 4443 3445567889998886 33 33222 2
Q ss_pred cEEEEEEecCCCCeeeeEEec-C---CCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEE--cCCCeEEEeeccCc
Q 004816 270 AELWVGYISENGDVYKRVCVA-G---FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSLDA 342 (729)
Q Consensus 270 ~~l~~~d~~~~g~~~~~~~~~-~---~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d--~~~g~~~~l~~~~~ 342 (729)
.+|+++++...+......... . ...+ .....++|+|+++ |+....+ ....||.++ +.+...+.+.. .
T Consensus 91 ~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N--~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g~~~~~~l~i~~~-~- 164 (255)
T 3qqz_A 91 YAIYVISLTPNSEVKILKKIKIPLQESPTN--CGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNGLLSSNELHISKD-K- 164 (255)
T ss_dssp TEEEEEEECTTCCEEEEEEEECCCSSCCCS--SCCEEEEEETTTTEEEEEEES--SSEEEEEEESTTCSSCCEEEEC-H-
T ss_pred CcEEEEEcCCCCeeeeeeeecccccccccc--CCcceEEEeCCCCEEEEEECc--CCceEEEEcccccCCceeeecc-h-
Confidence 469999887444321111111 1 1111 4567889999987 6665544 456899887 22222222211 0
Q ss_pred cccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee--ccCC-------cceEEe-eeeCCEEEE
Q 004816 343 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL--DIPF-------TDIDNI-TLGNDCLFV 412 (729)
Q Consensus 343 ~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l--t~~~-------~~v~~~-~~~~~~~~~ 412 (729)
.+...........+.+.| ..+++|+.+.. ...|..+|.++..+..+ ..+. ..-..+ .++++. +|
T Consensus 165 ~~~~~~~~~d~S~l~~dp---~tg~lliLS~~--s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-ly 238 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQ---QKNTLLVLSHE--SRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IY 238 (255)
T ss_dssp HHHHTCCSSCCCEEEEET---TTTEEEEEETT--TTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EE
T ss_pred hhccccccCCceeEEEcC---CCCeEEEEECC--CCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EE
Confidence 000000111234455554 56678877753 34677888877644433 3222 123455 334444 55
Q ss_pred EEeCCCCCceEEEEEcCC
Q 004816 413 EGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 413 ~~~~~~~~~~ly~~d~~~ 430 (729)
+.+.++ .+|++...+
T Consensus 239 IvsE~n---~~y~f~~~~ 253 (255)
T 3qqz_A 239 IVSEPN---RFYRFTPQS 253 (255)
T ss_dssp EEETTT---EEEEEEC--
T ss_pred EEcCCc---eEEEEEecC
Confidence 555443 788886544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00056 Score=70.45 Aligned_cols=227 Identities=11% Similarity=0.047 Sum_probs=115.4
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC--ceEEeee----
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ--NIQVLVS---- 238 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g--~~~~lt~---- 238 (729)
+.|+++|.++ ++........ ........+++|||+ | |+.+.. ...|++++.++. ....+..
T Consensus 69 ~~i~~~d~~~--g~~~~~~~~~--~~~~p~gia~d~~g~-l-~v~d~~-------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNN--AEILQSSGKN--LFYLPHGLSIDTDGN-Y-WVTDVA-------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTT--CCEEEEECTT--TCSSEEEEEECTTSC-E-EEEETT-------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCC--CeEEeccCCC--ccCCceEEEECCCCC-E-EEEECC-------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 3699999886 5543322210 012346788999999 4 444432 257999998865 3444421
Q ss_pred C-----CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec--CCC----CCccccccCceeCC
Q 004816 239 G-----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA--GFD----PTIVESPTEPKWSS 307 (729)
Q Consensus 239 ~-----~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~--~~~----~~~~~~~~~~~wsp 307 (729)
+ .....+.+++|++..|+++... ....|++++. +|+. ...+. +.. +.....+..++++|
T Consensus 136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~------~~~~I~~~~~--~g~~--~~~~~~~g~~~~~~~~~~~~p~gia~d~ 205 (329)
T 3fvz_A 136 GSDQNHFCQPTDVAVEPSTGAVFVSDGY------CNSRIVQFSP--SGKF--VTQWGEESSGSSPRPGQFSVPHSLALVP 205 (329)
T ss_dssp CCSTTCCSSEEEEEECTTTCCEEEEECS------SCCEEEEECT--TSCE--EEEECEECCSSSCCTTEESCEEEEEEET
T ss_pred CCCccccCCCcEEEEeCCCCeEEEEeCC------CCCeEEEEcC--CCCE--EEEeccCCCCCCCCCcccCCCcEEEEEC
Confidence 1 1134567999944457666521 2356888884 4654 22221 110 00002245678999
Q ss_pred CCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEE-----CCeEEEEE
Q 004816 308 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ-----NGRSYLGI 382 (729)
Q Consensus 308 DG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~-----~g~~~ly~ 382 (729)
|+..+|+++. +..+|.++++++|+........ ......+ .+.+. . +.++..... .+...+++
T Consensus 206 ~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~-----~~~~~----p-g~~~~~~g~~~v~~~~~~~v~~ 272 (329)
T 3fvz_A 206 HLDQLCVADR--ENGRIQCFKTDTKEFVREIKHA-SFGRNVF-----AISYI----P-GFLFAVNGKPYFGDQEPVQGFV 272 (329)
T ss_dssp TTTEEEEEET--TTTEEEEEETTTCCEEEEECCT-TTTTCEE-----EEEEE----T-TEEEEEECCCCTTCSCCCCEEE
T ss_pred CCCEEEEEEC--CCCEEEEEECCCCcEEEEEecc-ccCCCcc-----eeeec----C-CEEEEeCCCEEeccCCCcEEEE
Confidence 9443444444 4467889999866654333111 1111111 12222 2 233322211 12346788
Q ss_pred EECCCCceEeec----cCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 383 LDDFGHSLSLLD----IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 383 ~d~~~g~~~~lt----~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
++..+++....- ........+ ..+++.+++. ...+ ..|+++++++
T Consensus 273 ~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyva-d~~~--~~I~~~~~~~ 322 (329)
T 3fvz_A 273 MNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG-DAHT--NTVWKFTLTE 322 (329)
T ss_dssp EETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEE-ESSS--CCEEEEEEEE
T ss_pred EEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEE-ECCC--CEEEEEeCCc
Confidence 887777655432 223334555 3444544443 3222 2566666554
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.5e-05 Score=77.71 Aligned_cols=279 Identities=10% Similarity=-0.015 Sum_probs=140.8
Q ss_pred CCccCceEEcC-C--CcEEEEeecCCCCCceEEEEcCCCCCCCCc-ccCCCCCcccccccccCCceEEEECC-EEEEEEC
Q 004816 88 SKRLGGTAVDG-H--GRLIWLESRPTEAGRGVLVKEPAKAGDEPS-DITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNY 162 (729)
Q Consensus 88 ~~~~~~~~~~p-g--~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 162 (729)
...+..+.|+| + +.+..+.. .+|...+|..... +... ..+. .+........++.+ ..+++..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~---~dg~i~iw~~~~~--~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGS---WANDVRCWEVQDS--GQTIPKAQQ--------MHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEE---TTSEEEEEEECTT--SCEEEEEEE--------ECSSCEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEEC---CCCcEEEEEcCCC--CceeEEEec--------cccCCEEEEEECcCCCEEEEEc
Confidence 34568899998 5 56666654 4577788877543 1221 1111 01222334445433 4455666
Q ss_pred CCCcEEEEeCCCCCCCCeecCCCCCCCceeeeccee--cCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC
Q 004816 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF--DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS 240 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~--SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~ 240 (729)
.++.|.+||+.+ ++...+... ...+....| +|+|+.|+....+ ..|.++|+.+++........
T Consensus 106 ~dg~v~iwd~~~--~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 106 CDKTAKMWDLSS--NQAIQIAQH----DAPVKTIHWIKAPNYSCVMTGSWD---------KTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp TTSEEEEEETTT--TEEEEEEEC----SSCEEEEEEEECSSCEEEEEEETT---------SEEEEECSSCSSCSEEEECS
T ss_pred CCCcEEEEEcCC--CCceeeccc----cCceEEEEEEeCCCCCEEEEccCC---------CcEEEEECCCCcEEEEEecC
Confidence 788999999987 655554443 345677888 9999987666543 46999999887654444433
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC--c--EEEEEe
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG--E--LFFVTD 316 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG--~--l~~~~~ 316 (729)
.......++ +..++... . ...+.++++. .... ......... . .......+.+++ . .++...
T Consensus 171 ~~~~~~~~~--~~~~~~~~-~-------~~~i~~~~~~-~~~~-~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 171 ERCYCADVI--YPMAVVAT-A-------ERGLIVYQLE-NQPS-EFRRIESPL-K--HQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp SCEEEEEEE--TTEEEEEE-G-------GGCEEEEECS-SSCE-EEEECCCSC-S--SCEEEEEEEECTTSCEEEEEEEE
T ss_pred CCceEEEec--CCeeEEEe-C-------CCcEEEEEec-cccc-hhhhccccc-c--CCCceEEEcccCCCCCCeEEEec
Confidence 333333444 34555444 2 2348888887 4432 122221111 0 111122222222 1 244443
Q ss_pred cCCCceEEEEEEcCCCeE----EEeeccCccc---cCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 317 RKNGFWNLHKWIESNNEV----LAIYSLDAEF---SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 317 ~~~g~~~l~~~d~~~g~~----~~l~~~~~~~---~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
. .+. |.+++...... ..+....... ....-......+.|.+ +++ ++++...+|...|| |+.+++
T Consensus 236 ~-dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~-~l~s~~~dg~i~iw--d~~~~~ 306 (368)
T 3mmy_A 236 I-EGR--VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP---VHG-TLATVGSDGRFSFW--DKDART 306 (368)
T ss_dssp T-TSE--EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT---TTC-CEEEEETTSCEEEE--ETTTTE
T ss_pred C-CCc--EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec---CCC-EEEEEccCCeEEEE--ECCCCc
Confidence 3 344 44445544421 1221111000 0000000122344442 444 45566667765555 676665
Q ss_pred e-EeeccCCcceEEe-eeeCCEEEEEEeCCC
Q 004816 390 L-SLLDIPFTDIDNI-TLGNDCLFVEGASGV 418 (729)
Q Consensus 390 ~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~ 418 (729)
. ..+......+..+ ..+++.+++.++..+
T Consensus 307 ~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 307 KLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp EEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred EEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 4 4444445667777 455566666666543
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.4e-06 Score=87.00 Aligned_cols=109 Identities=10% Similarity=-0.038 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCCCC------ccccch----hhhHHHhhCCcEEEEecCCCCCCCchhHHHh------hccCCCc-----
Q 004816 491 KPPLLVKSHGGPTSE------ARGILN----LSIQYWTSRGWAFVDVNYGGSTGYGREFRER------LLGRWGI----- 549 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~------~~~~~~----~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~------~~~~~~~----- 549 (729)
..|.||++||..+.. ....|. ...+.|.++||.|+++|++|.+......... ..++.+.
T Consensus 51 ~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~~~~~~l~~~i~~g~g~sg~~~~~~ 130 (431)
T 2hih_A 51 NKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSEK 130 (431)
T ss_dssp CSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHCEEEECCHHHHHH
T ss_pred CCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCccchHHhhhhhhhcccccccccccc
Confidence 345688999975431 123443 4778888999999999999754321110000 0000000
Q ss_pred ----ccHHHHHHHHHHHHhCCCCC-CCcEEEEEcChHHHHHHHHHh---------------------------CCCcceE
Q 004816 550 ----VDVNDCCSCATFLVGSGKAD-EKRLCITGGSAGGYTTLAALA---------------------------FRDTFKA 597 (729)
Q Consensus 550 ----~~~~D~~~~~~~l~~~~~~d-~~ri~i~G~S~GG~~a~~~~~---------------------------~~~~~~a 597 (729)
...+|+.++++ . +. .+++.|+||||||.++..++. +|++++.
T Consensus 131 ~~~~~~a~dl~~ll~----~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~s 204 (431)
T 2hih_A 131 YGHERYGKTYEGVLK----D--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTS 204 (431)
T ss_dssp HTCCSEEEEECCSCT----T--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEE
T ss_pred CCHHHHHHHHHHHHH----H--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeE
Confidence 00111111111 1 11 378999999999999988764 4788999
Q ss_pred EEEecccc
Q 004816 598 GASLYGVA 605 (729)
Q Consensus 598 ~v~~~~~~ 605 (729)
+|++++..
T Consensus 205 lv~i~tP~ 212 (431)
T 2hih_A 205 ITTIATPH 212 (431)
T ss_dssp EEEESCCT
T ss_pred EEEECCCC
Confidence 99998753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0017 Score=65.15 Aligned_cols=274 Identities=10% Similarity=0.033 Sum_probs=141.3
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC-CEEEEEECCCCcE
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l 167 (729)
..+.++.+++.+.+|+... ..++ |.+++.. ++...+.... . ......+..+. +.+++.....+.|
T Consensus 20 ~~p~~i~~d~~g~l~v~~~---~~~~--v~~~~~~--~~~~~~~~~~-~------~~~~~~i~~~~~g~l~v~~~~~~~v 85 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQH---KANK--ISSLDQS--GRIKEFEVPT-P------DAKVMCLIVSSLGDIWFTENGANKI 85 (300)
T ss_dssp CCEEEEEECTTSCEEEEET---TTTE--EEEECTT--SCEEEEECSS-T------TCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CCcceeeECCCCCEEEEcC---CCCe--EEEECCC--CceEEEECCC-C------CCcceeEEECCCCCEEEEecCCCeE
Confidence 3566788887556777653 1233 5555544 2332221110 0 00112334443 3566665556789
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee--CCCeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS--GSDFYAF 245 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~--~~~~~~~ 245 (729)
++++.++ . .+.+.... .........++|+|+. ++. ... ...|++++.+ ++.+.+.. ......+
T Consensus 86 ~~~d~~g--~-~~~~~~~~--~~~~~~~i~~~~~g~l-~v~-~~~-------~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 86 GKLSKKG--G-FTEYPLPQ--PDSGPYGITEGLNGDI-WFT-QLN-------GDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp EEECTTS--C-EEEEECSS--TTCCEEEEEECSTTCE-EEE-ETT-------TTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred EEECCCC--C-eEEecCCC--CCCCCccceECCCCCE-EEE-ccC-------CCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 9999873 3 33332210 0234567788999983 333 321 1469999988 66654432 2334566
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 325 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~ 325 (729)
..++|||+ |++... ....|++++.+ ++.... ...... ..+..+.+++||++++.... ...|+
T Consensus 151 i~~d~~g~-l~v~~~-------~~~~i~~~~~~--g~~~~~-~~~~~~----~~~~~i~~d~~g~l~v~~~~---~~~i~ 212 (300)
T 2qc5_A 151 ITLGSDNA-LWFTEN-------QNNSIGRITNT--GKLEEY-PLPTNA----AAPVGITSGNDGALWFVEIM---GNKIG 212 (300)
T ss_dssp EEECTTSS-EEEEET-------TTTEEEEECTT--CCEEEE-ECSSTT----CCEEEEEECTTSSEEEEETT---TTEEE
T ss_pred EEECCCCC-EEEEec-------CCCeEEEECCC--CcEEEe-eCCCCC----CCcceEEECCCCCEEEEccC---CCEEE
Confidence 78999998 655542 13458888863 554321 122221 34456778899877665433 34688
Q ss_pred EEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC--CcceEEe
Q 004816 326 KWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--FTDIDNI 403 (729)
Q Consensus 326 ~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~--~~~v~~~ 403 (729)
++++ +++...+.... .... ...+.+. .++.+++... +...|++++.+ ++.+.+..+ ...+..+
T Consensus 213 ~~~~-~g~~~~~~~~~-~~~~------~~~i~~d----~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 277 (300)
T 2qc5_A 213 RITT-TGEISEYDIPT-PNAR------PHAITAG----KNSEIWFTEW--GANQIGRITND-NTIQEYQLQTENAEPHGI 277 (300)
T ss_dssp EECT-TCCEEEEECSS-TTCC------EEEEEEC----STTCEEEEET--TTTEEEEECTT-SCEEEEECCSTTCCCCCE
T ss_pred EEcC-CCcEEEEECCC-CCCC------ceEEEEC----CCCCEEEecc--CCCeEEEECCC-CcEEEEECCccCCcccee
Confidence 8988 55554442110 1111 1123332 3345665542 33468888884 555544332 2334444
Q ss_pred e-eeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 404 T-LGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 404 ~-~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
. ..++.+ +++.. . .+++++++
T Consensus 278 ~~~~~g~l-~v~~~--~--~i~~~~p~ 299 (300)
T 2qc5_A 278 TFGKDGSV-WFALK--C--KIGKLNLN 299 (300)
T ss_dssp EECTTSCE-EEECS--S--EEEEEEEC
T ss_pred EeCCCCCE-EEEcc--C--ceEEeCCC
Confidence 2 333443 33332 2 67776653
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00027 Score=79.42 Aligned_cols=207 Identities=13% Similarity=0.092 Sum_probs=129.6
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.+.++.+++ ++.|||.+.. .+ .|++.+.+++ ....++..+ +....+.++.+.++.|++++...+.|.
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~---~~--~I~r~~~~g~-~~~~v~~~~------~~~p~GlAvD~~~~~lY~tD~~~~~I~ 417 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDE---VR--AIRRSFIDGS-GSQFVVTAQ------IAHPDGIAVDWVARNLYWTDTGTDRIE 417 (619)
T ss_dssp SEEEEEEETTTTEEEEEETT---TT--EEEEEETTSC-SCEEEECSS------CSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred ccEEEEEEcCCCeEEEEeCC---CC--eEEEEEcCCC-ccEEEEECC------CCCcCceEEecccCcEEEEeCCCCcEE
Confidence 345677898 8999999863 23 4777776632 333333222 112234445555788999988888999
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeeeee
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFPR 247 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~~ 247 (729)
+.++++ ...+.|.... -....++++.|....|+++.... ...|++.++++...+.|.. ....-++.+
T Consensus 418 v~~~~G--~~~~~l~~~~---l~~P~~iavdp~~G~ly~tD~g~-------~~~I~r~~~dG~~~~~l~~~~l~~P~Gla 485 (619)
T 3s94_A 418 VTRLNG--TMRKILISED---LEEPRAIVLDPMVGYMYWTDWGE-------IPKIERAALDGSDRVVLVNTSLGWPNGLA 485 (619)
T ss_dssp EEETTS--CSCEEEECTT---CCSEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEeCCC--CeEEEEEECC---CCCeeeEEEEcCCCcEEEecCCC-------CCEEEEEccCCCccEEEEeCCCCCCeeeE
Confidence 999987 5555554321 23447888999877777664322 2579999999876666654 345667889
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEE
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKW 327 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~ 327 (729)
.++++++|||+... ...|+.++++ +... ..+..+.- .....++...| .|| .++. +...|+++
T Consensus 486 lD~~~~~LY~aD~~-------~~~I~~~~~d-G~~~--~~~~~~~l----~~P~glav~~~-~ly-~tD~--~~~~I~~~ 547 (619)
T 3s94_A 486 LDYDEGKIYWGDAK-------TDKIEVMNTD-GTGR--RVLVEDKI----PHIFGFTLLGD-YVY-WTDW--QRRSIERV 547 (619)
T ss_dssp EETTTTEEEEEETT-------TTEEEEEESS-SCCC--EEEEECCC----CSSCCEEEETT-EEE-EECT--TSSCEEEE
T ss_pred EcccCCEEEEEECC-------CCEEEEEecC-CCce--EEEeccCC----CCcEEEEEECC-EEE-Eeec--CCCeEEEE
Confidence 99999999988732 3469999987 3322 22333221 23334444322 244 4444 45678888
Q ss_pred EcCCCeEEEee
Q 004816 328 IESNNEVLAIY 338 (729)
Q Consensus 328 d~~~g~~~~l~ 338 (729)
|..+|..+.+.
T Consensus 548 ~k~~g~~~~~~ 558 (619)
T 3s94_A 548 HKRSAEREVII 558 (619)
T ss_dssp ESSSCCEEEEE
T ss_pred EcCCCceEEEe
Confidence 88887554443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.10 E-value=9.3e-05 Score=72.21 Aligned_cols=157 Identities=8% Similarity=-0.108 Sum_probs=95.2
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
+.++++.++.+...+++|.++|++++ ...+.+ -. . ++..--+.++|++|+..... ...++++|++
T Consensus 60 L~~~~~~Ly~stG~~g~v~~iD~~Tg-kv~~~~-l~----~-~~FgeGit~~g~~Ly~ltw~--------~~~v~V~D~~ 124 (268)
T 3nok_A 60 LVFHQGHFFESTGHQGTLRQLSLESA-QPVWME-RL----G-NIFAEGLASDGERLYQLTWT--------EGLLFTWSGM 124 (268)
T ss_dssp EEEETTEEEEEETTTTEEEECCSSCS-SCSEEE-EC----T-TCCEEEEEECSSCEEEEESS--------SCEEEEEETT
T ss_pred EEEECCEEEEEcCCCCEEEEEECCCC-cEEeEE-CC----C-CcceeEEEEeCCEEEEEEcc--------CCEEEEEECC
Confidence 45568888888888889999999983 333444 22 1 11111256688887665443 2679999999
Q ss_pred CCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 230 GQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 230 ~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
+.+.. ++.... .+...++||++|+... . ..+|+++|.+ +.+........... .-...+..+.|. |
T Consensus 125 Tl~~~~ti~~~~---eGwGLt~Dg~~L~vSd--G------s~~l~~iDp~-T~~v~~~I~V~~~g-~~v~~lNeLe~~-d 190 (268)
T 3nok_A 125 PPQRERTTRYSG---EGWGLCYWNGKLVRSD--G------GTMLTFHEPD-GFALVGAVQVKLRG-QPVELINELECA-N 190 (268)
T ss_dssp TTEEEEEEECSS---CCCCEEEETTEEEEEC--S------SSEEEEECTT-TCCEEEEEECEETT-EECCCEEEEEEE-T
T ss_pred cCcEEEEEeCCC---ceeEEecCCCEEEEEC--C------CCEEEEEcCC-CCeEEEEEEeCCCC-cccccccccEEe-C
Confidence 87654 443221 2344568999876443 2 3469999988 66643322222221 000123445676 7
Q ss_pred CcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 309 GELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 309 G~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
|+|| .... ....|.++|+++|++....
T Consensus 191 G~ly-anvw--~s~~I~vIDp~TG~V~~~I 217 (268)
T 3nok_A 191 GVIY-ANIW--HSSDVLEIDPATGTVVGVI 217 (268)
T ss_dssp TEEE-EEET--TCSEEEEECTTTCBEEEEE
T ss_pred CEEE-EEEC--CCCeEEEEeCCCCcEEEEE
Confidence 8755 4433 2358999999999877655
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=9.4e-05 Score=73.05 Aligned_cols=200 Identities=11% Similarity=-0.112 Sum_probs=108.3
Q ss_pred EEEC-CEEEEEECC--CCcEEEEeCCCCCCCCee-cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 151 RIFG-DTVIFSNYK--DQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 151 ~~~~-~~i~~~~~~--~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
.+++ +.++.+... .+.|.++|+.+ ++..+ +.-.. . .....+.++|++|+...+.. ..++++
T Consensus 27 ~~~~dg~Lyvstg~~~~s~v~~iD~~t--g~v~~~i~l~~----~-~fgeGi~~~g~~lyv~t~~~--------~~v~vi 91 (266)
T 2iwa_A 27 VYAENDTLFESTGLYGRSSVRQVALQT--GKVENIHKMDD----S-YFGEGLTLLNEKLYQVVWLK--------NIGFIY 91 (266)
T ss_dssp EECSTTEEEEEECSTTTCEEEEEETTT--CCEEEEEECCT----T-CCEEEEEEETTEEEEEETTC--------SEEEEE
T ss_pred EEeCCCeEEEECCCCCCCEEEEEECCC--CCEEEEEecCC----C-cceEEEEEeCCEEEEEEecC--------CEEEEE
Confidence 3444 455555543 46899999998 65433 22221 1 11112455688866665432 679999
Q ss_pred EcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 227 ALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 227 dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
|.++.+.. ++..+ .-.+...++||++|+. + +. ...|+++|.+ +.+........... .-...+..+.|
T Consensus 92 D~~t~~v~~~i~~g--~~~g~glt~Dg~~l~v-s-~g------s~~l~viD~~-t~~v~~~I~Vg~~~-~p~~~~nele~ 159 (266)
T 2iwa_A 92 DRRTLSNIKNFTHQ--MKDGWGLATDGKILYG-S-DG------TSILYEIDPH-TFKLIKKHNVKYNG-HRVIRLNELEY 159 (266)
T ss_dssp ETTTTEEEEEEECC--SSSCCEEEECSSSEEE-E-CS------SSEEEEECTT-TCCEEEEEECEETT-EECCCEEEEEE
T ss_pred ECCCCcEEEEEECC--CCCeEEEEECCCEEEE-E-CC------CCeEEEEECC-CCcEEEEEEECCCC-cccccceeEEE
Confidence 99987654 44333 1123457889998864 4 22 2469999988 55542222221111 00012345677
Q ss_pred CCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCcc------ccCCcccccCcceeeeeecCCCCEEEEEEEECCeEE
Q 004816 306 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE------FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 379 (729)
Q Consensus 306 spDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~------~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ 379 (729)
. ||++| .... ....|.++|++++++....+...- ...+. ....+.+.+.+ +++++|++. ....+
T Consensus 160 ~-dg~ly-vn~~--~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~-~~v~nGIa~~~---~~~~lfVTg--k~~~~ 229 (266)
T 2iwa_A 160 I-NGEVW-ANIW--QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRD-IDVLNGIAWDQ---ENKRIFVTG--KLWPK 229 (266)
T ss_dssp E-TTEEE-EEET--TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTT-CCCEEEEEEET---TTTEEEEEE--TTCSE
T ss_pred E-CCEEE-EecC--CCCeEEEEECCCCcEEEEEECCCcccccccccccc-cCceEEEEEcC---CCCEEEEEC--CCCCe
Confidence 7 77655 4443 245899999999987654422100 00000 00123455553 667777665 34556
Q ss_pred EEEEECCC
Q 004816 380 LGILDDFG 387 (729)
Q Consensus 380 ly~~d~~~ 387 (729)
||.+++..
T Consensus 230 v~~i~l~~ 237 (266)
T 2iwa_A 230 LFEIKLHL 237 (266)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 77776543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00015 Score=79.10 Aligned_cols=165 Identities=10% Similarity=-0.005 Sum_probs=94.5
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeeccee-c-CCCCEEEEEEecc------C---CCCCCcceE
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF-D-PRFNRYVTVREDR------R---QDALNSTTE 222 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~-S-PdG~~l~~~~~~~------~---~~~~~~~~~ 222 (729)
+..++..+..+++|.++|+++ .+..++...+.. .....+++ + |||++|++..+.. + ..++++...
T Consensus 101 G~~lfVnd~~~~rVavIdl~t--~~~~~ii~ip~g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDV--MKCDAILEIPNA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTT--TEEEEEEECSSC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCC--ceEeeEEeCCCC--CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 334555444566899999998 664443322111 12234454 5 9999975553211 0 123455678
Q ss_pred EEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCC-------C-----------------------CcE
Q 004816 223 IVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW-------D-----------------------KAE 271 (729)
Q Consensus 223 l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~-------~-----------------------~~~ 271 (729)
+-++|.++.++. ++.-+. ...+...||||++++.++.+.....+ . -..
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 999999987653 443332 45667899999988777643311000 0 012
Q ss_pred EEEEEecCC--CCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCC
Q 004816 272 LWVGYISEN--GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 272 l~~~d~~~~--g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g 332 (729)
+-++|.. + ++.. ...++-. .....+.+||||+.+|+++. +...+.++|.++.
T Consensus 256 V~VID~~-~~~~~~~-~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~--~s~~VsVid~~~~ 309 (595)
T 1fwx_A 256 VKVVDGR-KEASSLF-TRYIPIA-----NNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEECS-GGGCCSS-EEEEEEE-----SSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGH
T ss_pred EEEEeCc-ccCCcee-EEEEecC-----CCceEEEEcCCCCEEEEeCC--CCCeEEEEECccc
Confidence 5666665 3 2210 1111111 23467899999997777765 5567888888754
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00045 Score=74.08 Aligned_cols=151 Identities=5% Similarity=0.014 Sum_probs=91.1
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
++.|++.+.. +.|+++++++ +..+.+... ......++|+++|++|+++....... ...++.++.+++-.
T Consensus 149 ~g~Lyv~d~~-~~I~~id~~~--~~v~~~~~~----~~~P~~ia~d~~G~~lyvad~~~~~~----~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 149 HNHLYLVGEQ-HPTRLIDFEK--EYVSTVYSG----LSKVRTICWTHEADSMIITNDQNNND----RPNNYILTRESGFK 217 (430)
T ss_dssp EEEEEEEEBT-EEEEEEETTT--TEEEEEECC----CSCEEEEEECTTSSEEEEEECCSCTT----SEEEEEEEGGGTSC
T ss_pred CCeEEEEeCC-CcEEEEECCC--CEEEEEecC----CCCcceEEEeCCCCEEEEEeCCCCcc----cceEEEEeCCCcee
Confidence 3466666554 7899999987 666665443 24457889999999765554322111 24577777765432
Q ss_pred --EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 234 --QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 234 --~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
+.+.. .....+.+++|++.+|++..+ ...+|++++.+ ++... .+..... . .....++|+|||+.
T Consensus 218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~-------~~~~V~~~~~~-~~~~~--~~~~~~~-~--~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 218 VITELTK-GQNCNGAETHPINGELYFNSW-------NAGQVFRYDFT-TQETT--PLFTIQD-S--GWEFHIQFHPSGNY 283 (430)
T ss_dssp SEEEEEE-CSSCCCEEECTTTCCEEEEET-------TTTEEEEEETT-TTEEE--EEEECSS-S--SCCEEEEECTTSSE
T ss_pred eeeeecc-CCCceEEEEeCCCCEEEEEEC-------CCCEEEEEECC-CCcEE--EEEEcCC-C--CcceeEEEcCCCCE
Confidence 33332 233456789996556877763 23569999987 55432 2221111 0 23457899999994
Q ss_pred EEEEecCCCceEEEEEEcCC
Q 004816 312 FFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~ 331 (729)
+|.++. ...+|++++.++
T Consensus 284 lyv~d~--~~~~I~~~~~d~ 301 (430)
T 3tc9_A 284 AYIVVV--NQHYILRSDYDW 301 (430)
T ss_dssp EEEEET--TTTEEEEEEEET
T ss_pred EEEEEC--CCCEEEEEeCCc
Confidence 444443 446788877654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00027 Score=68.93 Aligned_cols=196 Identities=11% Similarity=0.066 Sum_probs=117.2
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEEEe
Q 004816 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS 171 (729)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~d 171 (729)
.++.++ ++.+|.... ..|+..|..++..+ |+...-.+.+ ..+-+..+.+.+++|+.....++.++++|
T Consensus 46 qGL~~~-~~~LyestG---~~g~S~v~~vD~~T-gkv~~~~~l~-------~~~FgeGit~~g~~ly~ltw~~~~v~v~D 113 (262)
T 3nol_A 46 EGFFYR-NGYFYESTG---LNGRSSIRKVDIES-GKTLQQIELG-------KRYFGEGISDWKDKIVGLTWKNGLGFVWN 113 (262)
T ss_dssp EEEEEE-TTEEEEEEE---ETTEEEEEEECTTT-CCEEEEEECC-------TTCCEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred ceEEEE-CCEEEEECC---CCCCceEEEEECCC-CcEEEEEecC-------CccceeEEEEeCCEEEEEEeeCCEEEEEE
Confidence 688888 777777654 34566777788773 3432222111 11223346678899999988889999999
Q ss_pred CCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-Eee--eCC---Ceee
Q 004816 172 IDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLV--SGS---DFYA 244 (729)
Q Consensus 172 ~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt--~~~---~~~~ 244 (729)
+++ .+ ..++.... ....+++||++|+.+ +. ...|+.+|.++.++. .+. .+. ...+
T Consensus 114 ~~t--~~~~~ti~~~~-------eG~glt~dg~~L~~S-dG--------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 114 IRN--LRQVRSFNYDG-------EGWGLTHNDQYLIMS-DG--------TPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp TTT--CCEEEEEECSS-------CCCCEEECSSCEEEC-CS--------SSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred Ccc--CcEEEEEECCC-------CceEEecCCCEEEEE-CC--------CCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 987 43 33444321 223466789875444 32 157999999987654 332 221 2223
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCC------CccccccCceeCCCCcEEEEEecC
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP------TIVESPTEPKWSSKGELFFVTDRK 318 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~------~~~~~~~~~~wspDG~l~~~~~~~ 318 (729)
...|. ||+ |+... |....|.++|.+ +|++....-+.+..+ .-......++|+|+++.+|++..
T Consensus 176 ELe~~-~G~-lyan~-------w~~~~I~vIDp~-tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK- 244 (262)
T 3nol_A 176 ELEWV-DGE-IFANV-------WQTNKIVRIDPE-TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK- 244 (262)
T ss_dssp EEEEE-TTE-EEEEE-------TTSSEEEEECTT-TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET-
T ss_pred eeEEE-CCE-EEEEE-------ccCCeEEEEECC-CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC-
Confidence 45676 774 65433 234579999998 888644433322110 00023467899999885555544
Q ss_pred CCceEEEEEEc
Q 004816 319 NGFWNLHKWIE 329 (729)
Q Consensus 319 ~g~~~l~~~d~ 329 (729)
.|..||.+.+
T Consensus 245 -~Wp~~~ev~~ 254 (262)
T 3nol_A 245 -LWPKVFEITL 254 (262)
T ss_dssp -TCSEEEEEEE
T ss_pred -CCCceEEEEE
Confidence 5777887654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0028 Score=68.07 Aligned_cols=231 Identities=11% Similarity=0.074 Sum_probs=127.2
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
..++.++++.+ ++...++.|.+||+.+ ++.. .+... ...+....| ||+.++....+ ..|.+
T Consensus 202 v~~~~~~~~~l-~s~s~dg~i~~wd~~~--~~~~~~~~~~----~~~v~~~~~--~~~~l~~~~~d---------g~i~i 263 (445)
T 2ovr_B 202 VRCMHLHEKRV-VSGSRDATLRVWDIET--GQCLHVLMGH----VAAVRCVQY--DGRRVVSGAYD---------FMVKV 263 (445)
T ss_dssp EEEEEEETTEE-EEEETTSEEEEEESSS--CCEEEEEECC----SSCEEEEEE--CSSCEEEEETT---------SCEEE
T ss_pred EEEEEecCCEE-EEEeCCCEEEEEECCC--CcEEEEEcCC----cccEEEEEE--CCCEEEEEcCC---------CEEEE
Confidence 44566666664 4455678999999987 5433 33332 233444455 78876665543 45888
Q ss_pred EEcCCCceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCce
Q 004816 226 IALNGQNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 304 (729)
Q Consensus 226 ~dl~~g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (729)
+|+.+++... +...........| ||++|+..+. ...|.++|+. +++. ...+.+.. ..+..
T Consensus 264 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~--------d~~i~i~d~~-~~~~--~~~~~~~~----~~v~~-- 324 (445)
T 2ovr_B 264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL--------DTSIRVWDVE-TGNC--IHTLTGHQ----SLTSG-- 324 (445)
T ss_dssp EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET--------TSCEEEEETT-TCCE--EEEECCCC----SCEEE--
T ss_pred EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC--------CCeEEEEECC-CCCE--EEEEcCCc----ccEEE--
Confidence 9998876543 3323344555666 8888876652 2349999998 6664 33444443 22333
Q ss_pred eCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 305 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 305 wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
+++++++++.... .+ .|.++|+.+++.............+. ..+.| +++ ++++...+|...|| +
T Consensus 325 ~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v-----~~~~~-----~~~-~l~s~~~dg~v~iw--d 388 (445)
T 2ovr_B 325 MELKDNILVSGNA-DS--TVKIWDIKTGQCLQTLQGPNKHQSAV-----TCLQF-----NKN-FVITSSDDGTVKLW--D 388 (445)
T ss_dssp EEEETTEEEEEET-TS--CEEEEETTTCCEEEEECSTTSCSSCE-----EEEEE-----CSS-EEEEEETTSEEEEE--E
T ss_pred EEEeCCEEEEEeC-CC--eEEEEECCCCcEEEEEccCCCCCCCE-----EEEEE-----CCC-EEEEEeCCCeEEEE--E
Confidence 3446665555444 34 46667887776544332211111111 12233 333 55566667766665 6
Q ss_pred CCCCce-Eeec-----cCCcceEEe-eeeCCEEEEEEeCCCC-CceEEEEEcCC
Q 004816 385 DFGHSL-SLLD-----IPFTDIDNI-TLGNDCLFVEGASGVE-PSSVAKVTLDD 430 (729)
Q Consensus 385 ~~~g~~-~~lt-----~~~~~v~~~-~~~~~~~~~~~~~~~~-~~~ly~~d~~~ 430 (729)
+.+++. ..+. .....+..+ ..+++.+++.++.... ...++.+|.+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 389 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 666654 3441 223446666 4455555555554443 44577777653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0015 Score=65.44 Aligned_cols=231 Identities=12% Similarity=0.062 Sum_probs=121.3
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCC--CCCceeeeccee-cCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIF-DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~-SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
.+++....++.|++++.++ ...+.+.... ..........++ +++|+ |+++.... ...|++++.++..
T Consensus 42 ~l~v~~~~~~~i~~~d~~g--~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~-------~~~i~~~d~~g~~ 111 (286)
T 1q7f_A 42 DIIVADTNNHRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSP-------THQIQIYNQYGQF 111 (286)
T ss_dssp CEEEEEGGGTEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGG-------GCEEEEECTTSCE
T ss_pred CEEEEECCCCEEEEECCCC--cEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCC-------CCEEEEECCCCcE
Confidence 5666655667899999875 5444443210 000123456678 46665 44443211 2569999965444
Q ss_pred eEEeeeC-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 233 IQVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 233 ~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
.+.+... .....+.+++|||+ |++... ....|++++.+ ++. ...+...... ..+..+++++||++
T Consensus 112 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~-------~~~~i~~~~~~--g~~--~~~~~~~~~~--~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 112 VRKFGATILQHPRGVTVDNKGR-IIVVEC-------KVMRVIIFDQN--GNV--LHKFGCSKHL--EFPNGVVVNDKQEI 177 (286)
T ss_dssp EEEECTTTCSCEEEEEECTTSC-EEEEET-------TTTEEEEECTT--SCE--EEEEECTTTC--SSEEEEEECSSSEE
T ss_pred EEEecCccCCCceEEEEeCCCC-EEEEEC-------CCCEEEEEcCC--CCE--EEEeCCCCcc--CCcEEEEECCCCCE
Confidence 4444322 23455678999997 655542 23468998854 443 2222211100 34567889999985
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
++.. . +...|+++|+++.....+.. ......| ..+.+. .++.+|++...++ ..|.+++.++..++
T Consensus 178 ~v~~-~--~~~~i~~~~~~g~~~~~~~~-~g~~~~p------~~i~~d----~~G~l~v~~~~~~-~~i~~~~~~g~~~~ 242 (286)
T 1q7f_A 178 FISD-N--RAHCVKVFNYEGQYLRQIGG-EGITNYP------IGVGIN----SNGEILIADNHNN-FNLTIFTQDGQLIS 242 (286)
T ss_dssp EEEE-G--GGTEEEEEETTCCEEEEESC-TTTSCSE------EEEEEC----TTCCEEEEECSSS-CEEEEECTTSCEEE
T ss_pred EEEE-C--CCCEEEEEcCCCCEEEEEcc-CCccCCC------cEEEEC----CCCCEEEEeCCCC-EEEEEECCCCCEEE
Confidence 5443 2 34578888986655444432 1111111 233443 3345665543322 26777788776666
Q ss_pred eeccCCc--ceEEe-eeeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 392 LLDIPFT--DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 392 ~lt~~~~--~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
.+..... ....+ ..+++.+++. +. + ..+.+++..
T Consensus 243 ~~~~~~~~~~~~~i~~~~~g~l~vs-~~-~--~~v~v~~~~ 279 (286)
T 1q7f_A 243 ALESKVKHAQCFDVALMDDGSVVLA-SK-D--YRLYIYRYV 279 (286)
T ss_dssp EEEESSCCSCEEEEEEETTTEEEEE-ET-T--TEEEEEECS
T ss_pred EEcccCCCCcceeEEECCCCcEEEE-CC-C--CeEEEEEcc
Confidence 6654322 23445 4445665554 32 2 355555543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00064 Score=69.03 Aligned_cols=69 Identities=12% Similarity=0.011 Sum_probs=46.5
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee---CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
+-..|||++ .|+ +..+ ..|+++|+++|+..++.. ........+|+|||++|+..+. ..
T Consensus 29 ~~l~WS~~~-~lA-vg~D---------~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~--------Dg 89 (318)
T 4ggc_A 29 NLVDWSSGN-VLA-VALD---------NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS--------SA 89 (318)
T ss_dssp BCEEECTTS-EEE-EEET---------TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET--------TS
T ss_pred eEEEECCCC-EEE-EEeC---------CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC--------CC
Confidence 446799987 444 4332 369999999998766543 2345678899999999886652 23
Q ss_pred EEEEEEecCCCC
Q 004816 271 ELWVGYISENGD 282 (729)
Q Consensus 271 ~l~~~d~~~~g~ 282 (729)
.|.++++. +++
T Consensus 90 ~v~iw~~~-~~~ 100 (318)
T 4ggc_A 90 EVQLWDVQ-QQK 100 (318)
T ss_dssp EEEEEETT-TTE
T ss_pred cEEEeecC-Cce
Confidence 46666665 443
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.4e-05 Score=73.64 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=87.3
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cc-h------h---------hhHHHhhCCc
Q 004816 460 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL-N------L---------SIQYWTSRGW 522 (729)
Q Consensus 460 ~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~-~------~---------~~~~la~~G~ 522 (729)
.+.+... .+..+..|++...+ ..+..|+|++++|||++.... .. . . .-..|. +-.
T Consensus 23 y~~v~~~-~~~~lFywf~es~~------~~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW~-~~a 94 (255)
T 1whs_A 23 YITVDEG-AGRSLFYLLQEAPE------DAQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWN-KVA 94 (255)
T ss_dssp EEEEETT-TTEEEEEEEECCCG------GGCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCGG-GTS
T ss_pred EEECCCC-CCcEEEEEEEEecC------CCCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCccccc-ccC
Confidence 4455444 67889989887643 135679999999999876443 11 0 0 001121 237
Q ss_pred EEEEecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHH-HHHhCCCCCCCcEEEEEcChHHHHHHHHHh----C---CC
Q 004816 523 AFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA----F---RD 593 (729)
Q Consensus 523 ~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~---~~ 593 (729)
+++.+|.+-+.|+...-.......++. ...+|+..+++ |+...+.....++.|.|.|+||..+-.++. + .-
T Consensus 95 nvlfiDqPvGtGfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~i 174 (255)
T 1whs_A 95 NVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVI 174 (255)
T ss_dssp EEEEECCSTTSTTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSC
T ss_pred CEEEEecCCCCccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCccc
Confidence 899999654455543211111101121 23556666665 333344455678999999999998877764 1 24
Q ss_pred cceEEEEeccccChhHH
Q 004816 594 TFKAGASLYGVADLSML 610 (729)
Q Consensus 594 ~~~a~v~~~~~~d~~~~ 610 (729)
.++++++.+|+.|....
T Consensus 175 nLkGi~ign~~~d~~~~ 191 (255)
T 1whs_A 175 NLKGFMVGNGLIDDYHD 191 (255)
T ss_dssp EEEEEEEEEECCBHHHH
T ss_pred ccceEEecCCccCHHHh
Confidence 68999999999987543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00076 Score=65.19 Aligned_cols=200 Identities=11% Similarity=-0.029 Sum_probs=110.1
Q ss_pred EEEECCEEEEEECCC--CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 150 FRIFGDTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~--~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
+.++++.++.+.... +.|.++|+++ ++..+-...+ .++..--+.++|++|+-.... ...++++|
T Consensus 26 L~~~~~~LyestG~~g~S~v~~vD~~t--gkv~~~~~l~----~~~fgeGi~~~~~~ly~ltw~--------~~~v~v~D 91 (243)
T 3mbr_X 26 LFYLRGHLYESTGETGRSSVRKVDLET--GRILQRAEVP----PPYFGAGIVAWRDRLIQLTWR--------NHEGFVYD 91 (243)
T ss_dssp EEEETTEEEEEECCTTSCEEEEEETTT--CCEEEEEECC----TTCCEEEEEEETTEEEEEESS--------SSEEEEEE
T ss_pred EEEECCEEEEECCCCCCceEEEEECCC--CCEEEEEeCC----CCcceeEEEEeCCEEEEEEee--------CCEEEEEE
Confidence 345677877777665 3899999998 6543322221 111222345678886665433 36899999
Q ss_pred cCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 228 LNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 228 l~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
.++.+.. ++..+. .+...++||++|+. + +. ..+|+++|.+ +.+........... .-...+..+.|.
T Consensus 92 ~~tl~~~~ti~~~~---~Gwglt~dg~~L~v-S-dg------s~~l~~iDp~-t~~~~~~I~V~~~g-~~~~~lNeLe~~ 158 (243)
T 3mbr_X 92 LATLTPRARFRYPG---EGWALTSDDSHLYM-S-DG------TAVIRKLDPD-TLQQVGSIKVTAGG-RPLDNLNELEWV 158 (243)
T ss_dssp TTTTEEEEEEECSS---CCCEEEECSSCEEE-E-CS------SSEEEEECTT-TCCEEEEEECEETT-EECCCEEEEEEE
T ss_pred CCcCcEEEEEeCCC---CceEEeeCCCEEEE-E-CC------CCeEEEEeCC-CCeEEEEEEEccCC-cccccceeeEEe
Confidence 9987654 443322 23455689988754 4 22 2459999987 66543222221111 000122345565
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCcc---ccC--CcccccCcceeeeeecCCCCEEEEEEEECCeEEEE
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE---FSR--PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 381 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~---~~~--~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly 381 (729)
||++| .... ....|.++|+++|++....+...- ... ..-....+.+++.+ ++++||++. .-+..||
T Consensus 159 -~G~ly-anvw--~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~---~~~~lfVTG--K~wp~~~ 229 (243)
T 3mbr_X 159 -NGELL-ANVW--LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA---EHDRLFVTG--KRWPMLY 229 (243)
T ss_dssp -TTEEE-EEET--TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET---TTTEEEEEE--TTCSEEE
T ss_pred -CCEEE-EEEC--CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC---CCCEEEEEC--CCCCcEE
Confidence 77755 4333 234899999999997765532211 000 00001123455543 566777664 3456777
Q ss_pred EEEC
Q 004816 382 ILDD 385 (729)
Q Consensus 382 ~~d~ 385 (729)
.+.+
T Consensus 230 ~v~~ 233 (243)
T 3mbr_X 230 EIRL 233 (243)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00053 Score=66.91 Aligned_cols=192 Identities=9% Similarity=-0.002 Sum_probs=113.4
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEEEe
Q 004816 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS 171 (729)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~d 171 (729)
.++.++ ++.+|.... ..|+ |..++..++.-.+.+++. .+-+....+.+++|+.....++.++++|
T Consensus 58 qGL~~~-~~~Ly~stG---~~g~--v~~iD~~Tgkv~~~~l~~---------~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 58 QGLVFH-QGHFFESTG---HQGT--LRQLSLESAQPVWMERLG---------NIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEE-TTEEEEEET---TTTE--EEECCSSCSSCSEEEECT---------TCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred ceEEEE-CCEEEEEcC---CCCE--EEEEECCCCcEEeEECCC---------CcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 678888 888877665 3344 666676633222222211 1112335677889988888889999999
Q ss_pred CCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-ee--eCC---Ceeee
Q 004816 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV-LV--SGS---DFYAF 245 (729)
Q Consensus 172 ~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt--~~~---~~~~~ 245 (729)
.++. ....++.... ....+++||++|+.+ +. ...|+++|.++.++.. +. ... ...+.
T Consensus 123 ~~Tl-~~~~ti~~~~-------eGwGLt~Dg~~L~vS-dG--------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNe 185 (268)
T 3nok_A 123 GMPP-QRERTTRYSG-------EGWGLCYWNGKLVRS-DG--------GTMLTFHEPDGFALVGAVQVKLRGQPVELINE 185 (268)
T ss_dssp TTTT-EEEEEEECSS-------CCCCEEEETTEEEEE-CS--------SSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred CCcC-cEEEEEeCCC-------ceeEEecCCCEEEEE-CC--------CCEEEEEcCCCCeEEEEEEeCCCCcccccccc
Confidence 9872 2233444321 123456789975544 42 1579999999977643 32 222 13345
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecC---------CCCCccccccCceeCCCCcEEEEEe
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG---------FDPTIVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~wspDG~l~~~~~ 316 (729)
..|. || +|+... |...+|.++|.+ +|++....-+.+ .+.. .....++|+|+++-+|++.
T Consensus 186 Le~~-dG-~lyanv-------w~s~~I~vIDp~-TG~V~~~Idl~~L~~~~~~~~~~~~--~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 186 LECA-NG-VIYANI-------WHSSDVLEIDPA-TGTVVGVIDASALTRAVAGQVTNPE--AVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEE-TT-EEEEEE-------TTCSEEEEECTT-TCBEEEEEECHHHHHHHTTTCCCTT--CCEEEEEECTTTCCEEEEE
T ss_pred cEEe-CC-EEEEEE-------CCCCeEEEEeCC-CCcEEEEEECCCCcccccccccCcC--CceEEEEEcCCCCEEEEeC
Confidence 5676 77 465333 234579999998 888644333321 1111 2446789999988444443
Q ss_pred cCCCceEEEEEEc
Q 004816 317 RKNGFWNLHKWIE 329 (729)
Q Consensus 317 ~~~g~~~l~~~d~ 329 (729)
. .|..||.+.+
T Consensus 254 K--~Wp~~~ev~~ 264 (268)
T 3nok_A 254 K--LWPRLFEVRL 264 (268)
T ss_dssp T--TCSEEEEEEE
T ss_pred C--CCCceEEEEE
Confidence 3 5677887654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0011 Score=71.05 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=88.6
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI- 233 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~- 233 (729)
+.|++.+.. ..|+++++++ +..+.+... ......++++|||+ |+++....... ...++.++..++..
T Consensus 153 g~Lyv~D~~-~~I~~id~~~--g~v~~~~~~----~~~P~giavd~dG~-lyVad~~~~~~----~~gv~~~~~~~~~~~ 220 (433)
T 4hw6_A 153 DDLYWVGQR-DAFRHVDFVN--QYVDIKTTN----IGQCADVNFTLNGD-MVVVDDQSSDT----NTGIYLFTRASGFTE 220 (433)
T ss_dssp CEEEEECBT-SCEEEEETTT--TEEEEECCC----CSCEEEEEECTTCC-EEEEECCSCTT----SEEEEEECGGGTTCC
T ss_pred CEEEEEeCC-CCEEEEECCC--CEEEEeecC----CCCccEEEECCCCC-EEEEcCCCCcc----cceEEEEECCCCeec
Confidence 567766554 7899999976 666666543 23457889999999 54443321111 24466666654432
Q ss_pred -EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEE
Q 004816 234 -QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 234 -~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
..+. ......+.+++|++..|++... ....|++++.+ +|.........+.. .....++|+|||+.+
T Consensus 221 ~~~~~-~~~~P~giavd~~~G~lyv~d~-------~~~~V~~~d~~-~g~~~~~~~~~~~~----~~~~~ia~dpdG~~L 287 (433)
T 4hw6_A 221 RLSLC-NARGAKTCAVHPQNGKIYYTRY-------HHAMISSYDPA-TGTLTEEEVMMDTK----GSNFHIVWHPTGDWA 287 (433)
T ss_dssp EEEEE-ECSSBCCCEECTTTCCEEECBT-------TCSEEEEECTT-TCCEEEEEEECSCC----SSCEEEEECTTSSEE
T ss_pred ccccc-ccCCCCEEEEeCCCCeEEEEEC-------CCCEEEEEECC-CCeEEEEEeccCCC----CCcccEEEeCCCCEE
Confidence 2333 2233456789995556876653 23569999987 67652222222221 222358999999944
Q ss_pred EEEecCCCceEEEEEEcC
Q 004816 313 FVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~ 330 (729)
|+++. +..+|++++.+
T Consensus 288 Yvad~--~~~~I~~~~~d 303 (433)
T 4hw6_A 288 YIIYN--GKHCIYRVDYN 303 (433)
T ss_dssp EEEET--TTTEEEEEEBC
T ss_pred EEEeC--CCCEEEEEeCC
Confidence 45544 45678887765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00019 Score=79.11 Aligned_cols=218 Identities=8% Similarity=-0.057 Sum_probs=119.3
Q ss_pred CCCCcEEEEeCCCCCCCCe-----ecCCCCCCCceeeecceecCC------CCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 162 YKDQRLYKHSIDSKDSSPL-----PITPDYGEPLVSYADGIFDPR------FNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~-----~lt~~~~~~~~~~~~~~~SPd------G~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
..++.|.+|++++ ++.. .+... ...+...+|+|+ |+.|+....+ ..|.++++.+
T Consensus 180 s~D~tI~iWd~~~--~~~~~~~~~~l~~~----~~~V~~v~wsp~~~~~~~~~~LAs~s~D---------gtvrlWd~~~ 244 (524)
T 2j04_B 180 KHSSCIQIFKMNT--STLHCVKVQTIVHS----FGEVWDLKWHEGCHAPHLVGCLSFVSQE---------GTINFLEIID 244 (524)
T ss_dssp --CEEEEEEEEET--TTCCEEEEEEEEEC----CCSEEEEEECSSCCCSSSSCEEEEEETT---------SCEEEEECCC
T ss_pred CCCceEEEEEccC--CCCCceEEEEEEec----CCcEEEEEECCCCCCCCCCceEEEEecC---------CeEEEEEcCC
Confidence 3456677888776 4421 12222 234677889997 5666655543 3477778876
Q ss_pred Cce------------EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccc
Q 004816 231 QNI------------QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 298 (729)
Q Consensus 231 g~~------------~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~ 298 (729)
++. ..+..........+|+|++ .|+..+ ....|.++|+. ++.. ....+.+.. .
T Consensus 245 ~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs--------~DgtV~lWD~~-~~~~-~~~~~~~H~----~ 309 (524)
T 2j04_B 245 NATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGF--------KNGFVAEFDLT-DPEV-PSFYDQVHD----S 309 (524)
T ss_dssp CSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEE--------TTSEEEEEETT-BCSS-CSEEEECSS----S
T ss_pred CccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEe--------CCCEEEEEECC-CCCC-ceEEeeccc----c
Confidence 532 1233334556778999875 566554 23459999998 5532 233455554 4
Q ss_pred cccCc--eeCCCC-cEEEEEecCCCceEEEEEEcCCCeEE-EeeccC--ccccCCcccccCcceeeeeecCCCCEEEEEE
Q 004816 299 SPTEP--KWSSKG-ELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLD--AEFSRPLWVFGINSYEIIQSHGEKNLIACSY 372 (729)
Q Consensus 299 ~~~~~--~wspDG-~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~--~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s 372 (729)
.+..+ .|++|| ++++.... .+. |.++|+.+++.. .+.... ..+. .+.|.| +++. ++++
T Consensus 310 ~V~sv~~~~s~~g~~~laS~S~-D~t--vklWD~~~~~~~~~~~~~~~~~~v~---------~v~fsp---~~~~-l~s~ 373 (524)
T 2j04_B 310 YILSVSTAYSDFEDTVVSTVAV-DGY--FYIFNPKDIATTKTTVSRFRGSNLV---------PVVYCP---QIYS-YIYS 373 (524)
T ss_dssp CEEEEEEECCTTSCCEEEEEET-TSE--EEEECGGGHHHHCEEEEECSCCSCC---------CEEEET---TTTE-EEEE
T ss_pred cEEEEEEEcCCCCCeEEEEecc-CCe--EEEEECCCCCcccccccccccCccc---------ceEeCC---CcCe-EEEe
Confidence 55666 578998 66666554 444 555577665422 222111 0111 234442 5554 4444
Q ss_pred EECCeEEEEEEECCCCce-EeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 373 RQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 373 ~~~g~~~ly~~d~~~g~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
..++...| +|+.++.. ..+......|..+ ..+++.+++.++.. ..+.++++..
T Consensus 374 ~~d~tv~l--wd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D---gtv~lwd~~~ 428 (524)
T 2j04_B 374 DGASSLRA--VPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD---GSLIITNAAR 428 (524)
T ss_dssp CSSSEEEE--EETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT---TEEECCBSCS
T ss_pred CCCCcEEE--EECcccccceeeecCCCceEEEEeCCCCCeEEEEECC---CEEEEEechH
Confidence 45555444 47666553 5566666677777 44455555555533 2455555543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0046 Score=61.95 Aligned_cols=223 Identities=10% Similarity=0.014 Sum_probs=121.5
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.+++.....+.|++++.++ ....+.... .........++|||+. ++.... ...|++++.+ ++.+.
T Consensus 27 ~l~v~~~~~~~v~~~d~~~---~~~~~~~~~--~~~~~~~i~~~~~g~l-~v~~~~--------~~~i~~~~~~-g~~~~ 91 (299)
T 2z2n_A 27 KVWITQHKANMISCINLDG---KITEYPLPT--PDAKVMCLTISSDGEV-WFTENA--------ANKIGRITKK-GIIKE 91 (299)
T ss_dssp CEEEEETTTTEEEEECTTC---CEEEEECSS--TTCCEEEEEECTTSCE-EEEETT--------TTEEEEECTT-SCEEE
T ss_pred CEEEEecCCCcEEEEcCCC---CeEEecCCc--ccCceeeEEECCCCCE-EEeCCC--------CCeEEEECCC-CcEEE
Confidence 5555555567899998873 333332110 0234567789999984 333221 1469999987 55554
Q ss_pred eee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 236 LVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 236 lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
+.. ......+..++|||+ |++.... ...|+++|.+ ++.... ...... ..+..+.+++||++++
T Consensus 92 ~~~~~~~~~~~~i~~~~~g~-l~v~~~~-------~~~i~~~d~~--g~~~~~-~~~~~~----~~~~~i~~~~~g~l~v 156 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEGPNGD-IWFTEMN-------GNRIGRITDD--GKIREY-ELPNKG----SYPSFITLGSDNALWF 156 (299)
T ss_dssp EECSSTTCCEEEEEECTTSC-EEEEETT-------TTEEEEECTT--CCEEEE-ECSSTT----CCEEEEEECTTSCEEE
T ss_pred EeCCCcCCCceeeEECCCCC-EEEEecC-------CceEEEECCC--CCEEEe-cCCCCC----CCCceEEEcCCCCEEE
Confidence 432 223455678899986 5554421 2458888863 544221 122222 3445678899998766
Q ss_pred EEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
... +...|+++|+ +++.+.+.... .... ...+.+. .++.+|+.... ...|++++. +++.+.+
T Consensus 157 ~~~---~~~~i~~~~~-~g~~~~~~~~~-~~~~------~~~i~~~----~~g~l~v~~~~--~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 157 TEN---QNNAIGRITE-SGDITEFKIPT-PASG------PVGITKG----NDDALWFVEII--GNKIGRITT-SGEITEF 218 (299)
T ss_dssp EET---TTTEEEEECT-TCCEEEEECSS-TTCC------EEEEEEC----TTSSEEEEETT--TTEEEEECT-TCCEEEE
T ss_pred EeC---CCCEEEEEcC-CCcEEEeeCCC-CCCc------ceeEEEC----CCCCEEEEccC--CceEEEECC-CCcEEEE
Confidence 543 2346899998 67665542111 1111 1123332 33446655432 336888888 6666555
Q ss_pred ccC--CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 394 DIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 394 t~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
..+ ...+..+ ...++.+++.... ...|++++.+
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~d~~ 254 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWG---ANKIGRLTSN 254 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETT---TTEEEEEETT
T ss_pred ECCCCCCCceeEEECCCCCEEEeccC---CceEEEECCC
Confidence 332 3345555 3334554443322 3468888873
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.016 Score=62.12 Aligned_cols=227 Identities=9% Similarity=0.050 Sum_probs=128.4
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
..+..++++ ++++...++.|.+|++.+ ++. ..+... ...+....| +++.++....+ ..|.+
T Consensus 162 v~~~~~~~~-~l~s~~~dg~i~vwd~~~--~~~~~~~~~h----~~~v~~~~~--~~~~l~s~s~d---------g~i~~ 223 (445)
T 2ovr_B 162 VWSSQMRDN-IIISGSTDRTLKVWNAET--GECIHTLYGH----TSTVRCMHL--HEKRVVSGSRD---------ATLRV 223 (445)
T ss_dssp EEEEEEETT-EEEEEETTSCEEEEETTT--TEEEEEECCC----SSCEEEEEE--ETTEEEEEETT---------SEEEE
T ss_pred EEEEEecCC-EEEEEeCCCeEEEEECCc--CcEEEEECCC----CCcEEEEEe--cCCEEEEEeCC---------CEEEE
Confidence 344555655 455556788999999987 543 333332 233455555 56666555443 46999
Q ss_pred EEcCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCce
Q 004816 226 IALNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 304 (729)
Q Consensus 226 ~dl~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (729)
+|+.+++...... .........| ||+.|+..+. ...|.++|+. +++. ...+.+.. ..+..+.
T Consensus 224 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~--------dg~i~iwd~~-~~~~--~~~~~~~~----~~v~~~~ 286 (445)
T 2ovr_B 224 WDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY--------DFMVKVWDPE-TETC--LHTLQGHT----NRVYSLQ 286 (445)
T ss_dssp EESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--------TSCEEEEEGG-GTEE--EEEECCCS----SCEEEEE
T ss_pred EECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--------CCEEEEEECC-CCcE--eEEecCCC----CceEEEE
Confidence 9999887654433 3344455556 8888876652 2348999988 5654 44444444 4455666
Q ss_pred eCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 305 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 305 wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
| ||+.++.... .+ .|.++|+.+++......... ... ..+.+ +++ ++++...+|...+| |
T Consensus 287 ~--~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~---~~v-----~~~~~-----~~~-~l~~~~~dg~i~vw--d 345 (445)
T 2ovr_B 287 F--DGIHVVSGSL-DT--SIRVWDVETGNCIHTLTGHQ---SLT-----SGMEL-----KDN-ILVSGNADSTVKIW--D 345 (445)
T ss_dssp E--CSSEEEEEET-TS--CEEEEETTTCCEEEEECCCC---SCE-----EEEEE-----ETT-EEEEEETTSCEEEE--E
T ss_pred E--CCCEEEEEeC-CC--eEEEEECCCCCEEEEEcCCc---ccE-----EEEEE-----eCC-EEEEEeCCCeEEEE--E
Confidence 7 7774444443 34 46667887776544332110 111 11222 344 45555667765555 6
Q ss_pred CCCCce-Eeecc---CCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 385 DFGHSL-SLLDI---PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 385 ~~~g~~-~~lt~---~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+.+++. ..+.. ....+..+..+++ +++.++.. ..+..+++.+++.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~d---g~v~iwd~~~~~~ 394 (445)
T 2ovr_B 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKN-FVITSSDD---GTVKLWDLKTGEF 394 (445)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEECSS-EEEEEETT---SEEEEEETTTCCE
T ss_pred CCCCcEEEEEccCCCCCCCEEEEEECCC-EEEEEeCC---CeEEEEECCCCce
Confidence 666553 44443 3345666655444 44544433 4688888887764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0015 Score=63.16 Aligned_cols=198 Identities=13% Similarity=0.095 Sum_probs=116.0
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 169 (729)
...++.++ ++.+|.... ..|+..|...+..+ |+...-.+-+ ..+-+....+.+++|+.....++.+++
T Consensus 22 ftqGL~~~-~~~LyestG---~~g~S~v~~vD~~t-gkv~~~~~l~-------~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 22 FTEGLFYL-RGHLYESTG---ETGRSSVRKVDLET-GRILQRAEVP-------PPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp CEEEEEEE-TTEEEEEEC---CTTSCEEEEEETTT-CCEEEEEECC-------TTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred ccccEEEE-CCEEEEECC---CCCCceEEEEECCC-CCEEEEEeCC-------CCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 34578888 777777554 34555677777763 3332222111 112233466778999888888899999
Q ss_pred EeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-Eee--eCC---Ce
Q 004816 170 HSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLV--SGS---DF 242 (729)
Q Consensus 170 ~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt--~~~---~~ 242 (729)
+|.++ .+ ...+.... ....+++||++|+ +++. ...|+++|.++.++. .+. ... ..
T Consensus 90 ~D~~t--l~~~~ti~~~~-------~Gwglt~dg~~L~-vSdg--------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 90 YDLAT--LTPRARFRYPG-------EGWALTSDDSHLY-MSDG--------TAVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp EETTT--TEEEEEEECSS-------CCCEEEECSSCEE-EECS--------SSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EECCc--CcEEEEEeCCC-------CceEEeeCCCEEE-EECC--------CCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 99987 33 33343321 1234567888754 4442 157999999987654 332 211 23
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCC-------ccccccCceeCCCCcEEEEE
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT-------IVESPTEPKWSSKGELFFVT 315 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~wspDG~l~~~~ 315 (729)
.+...|. ||+ |+ +.. |...+|.++|.+ +|++....-+.+..+. -...+..++|+|+++-+|++
T Consensus 152 lNeLe~~-~G~-ly-anv------w~s~~I~vIDp~-tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 152 LNELEWV-NGE-LL-ANV------WLTSRIARIDPA-SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp EEEEEEE-TTE-EE-EEE------TTTTEEEEECTT-TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred ceeeEEe-CCE-EE-EEE------CCCCeEEEEECC-CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 3445554 665 54 442 234579999998 8886444333321000 00234678999998855555
Q ss_pred ecCCCceEEEEEEc
Q 004816 316 DRKNGFWNLHKWIE 329 (729)
Q Consensus 316 ~~~~g~~~l~~~d~ 329 (729)
.. .|..||.+.+
T Consensus 222 GK--~wp~~~~v~~ 233 (243)
T 3mbr_X 222 GK--RWPMLYEIRL 233 (243)
T ss_dssp ET--TCSEEEEEEE
T ss_pred CC--CCCcEEEEEE
Confidence 43 5677887665
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00083 Score=72.31 Aligned_cols=161 Identities=7% Similarity=0.003 Sum_probs=96.6
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeeccee-------cCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF-------DPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~-------SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
++.|++.......|+++|+++ +....|.........+...++| +++|++|++....... . .....++++
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~--~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~-~-~~~~~V~~i 226 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKN--RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK-G-DESPSVYII 226 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTT--TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT-G-GGEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEECCC--CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC-c-ccCceEEEE
Confidence 446666665556899999987 6776655432111234577889 9999986655443211 0 113468888
Q ss_pred EcCC-Cce------EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC------CCCe------e---
Q 004816 227 ALNG-QNI------QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE------NGDV------Y--- 284 (729)
Q Consensus 227 dl~~-g~~------~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~------~g~~------~--- 284 (729)
+.+. |+. +.+... ....+.+.+|+++.|+++... ..+|+++|++. ++.. .
T Consensus 227 ~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~-------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 227 KRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYE-------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp ECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETT-------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred ecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECC-------CCEEEEEecccccccccCceeeccccccccc
Confidence 7655 333 334322 234567899988889888742 34699999861 2432 0
Q ss_pred -eeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCC
Q 004816 285 -KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 285 -~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~ 331 (729)
...+..-.+ . .....++|+|||+.+|+++. +..+|++++.++
T Consensus 299 ~~~~l~~~~~-~--~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg 341 (496)
T 3kya_A 299 TFKQLFTIAD-P--SWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDE 341 (496)
T ss_dssp TEEEEEECSS-S--SCCEEEEECTTSSEEEEEET--TTTEEEEEEEET
T ss_pred ccceeEecCC-C--CCceEEEEcCCCCEEEEEeC--CCCEEEEEecCC
Confidence 011222111 1 23457899999995566665 567888877654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00037 Score=75.00 Aligned_cols=116 Identities=11% Similarity=0.035 Sum_probs=69.9
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC-----ce------EEeee-CCCeeeeeeeCCC-CCeEEEE
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-----NI------QVLVS-GSDFYAFPRMDPR-GERMAWI 258 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g-----~~------~~lt~-~~~~~~~~~~SPD-G~~la~~ 258 (729)
.+...+|||||++|+........ ...|.++|+.++ +. ..+.. ........+|+|+ ++.|+..
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEY-----GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTT-----EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred cccEEEEcCCCCEEEEEEeccCC-----CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 36778999999988753211100 256888888654 11 11111 2345677899998 6666655
Q ss_pred EecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCC
Q 004816 259 EWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 259 ~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~ 331 (729)
+. ...|.++|+. ++.. .....+.. ..+..++|+|||+ |+... . .+ .|.++|+++
T Consensus 169 s~--------Dg~v~iwD~~-~~~~--~~~~~~~~----~~v~~v~wspdg~~lasgs-~-dg--~v~iwd~~~ 223 (434)
T 2oit_A 169 LA--------DGSIAVLQVT-ETVK--VCATLPST----VAVTSVCWSPKGKQLAVGK-Q-NG--TVVQYLPTL 223 (434)
T ss_dssp ET--------TSCEEEEEES-SSEE--EEEEECGG----GCEEEEEECTTSSCEEEEE-T-TS--CEEEECTTC
T ss_pred EC--------CCeEEEEEcC-CCcc--eeeccCCC----CceeEEEEcCCCCEEEEEc-C-CC--cEEEEccCC
Confidence 52 2348999998 5532 22222322 4567789999999 55444 3 34 466677773
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=75.13 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.+.|+++||..++ ...|..+...+. +.|+.+++++.. ....++++...+...+... ...+
T Consensus 46 ~~~l~~~hg~~g~--~~~~~~~~~~l~---~~v~~~~~~~~~--------------~~~~~~~~a~~~~~~i~~~-~~~~ 105 (316)
T 2px6_A 46 ERPLFLVHPIEGS--TTVFHSLASRLS---IPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQV-QPEG 105 (316)
T ss_dssp SCCEEEECCTTCC--SGGGHHHHHHCS---SCEEEECCCTTS--------------CTTCHHHHHHHHHHHHTTT-CSSC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHhcC---CCEEEEECCCCC--------------CcCCHHHHHHHHHHHHHHh-CCCC
Confidence 4568899997433 345555555553 899999997210 0112344433333333321 1236
Q ss_pred cEEEEEcChHHHHHHHHHh-C---CCc---ceEEEEeccc
Q 004816 572 RLCITGGSAGGYTTLAALA-F---RDT---FKAGASLYGV 604 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~---~~~---~~a~v~~~~~ 604 (729)
++.++|||+||.+|+.++. . +.. ++.++++++.
T Consensus 106 ~~~l~G~S~Gg~va~~~a~~l~~~g~~~p~v~~l~li~~~ 145 (316)
T 2px6_A 106 PYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 145 (316)
T ss_dssp CCEEEEETHHHHHHHHHHHHHHHHC---CCCCEEEEESCS
T ss_pred CEEEEEECHHHHHHHHHHHHHHHcCCcccccceEEEEcCC
Confidence 7999999999999988875 2 345 7888876654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00056 Score=72.46 Aligned_cols=107 Identities=7% Similarity=-0.065 Sum_probs=67.2
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCe---ecCCCCCCCceeeecceecC--------CCCEEEEEEeccCCCCCCcceEEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDP--------RFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~SP--------dG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
.++.+...++.|.+|++++ ++.. .+... .+....+.+.+|+| ||+.|+-...+ ..|.
T Consensus 102 ~~las~~~d~~v~lw~~~~--~~~~~~~~~~~~-~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D---------~tv~ 169 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKN--ETIITQHVLGGK-SGHHNFVNDIDIADVYSADNRLAEQVIASVGDD---------CTLI 169 (393)
T ss_dssp EEEEEEETTSCEEEEEEET--TEEEEEEEECTT-TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT---------SEEE
T ss_pred CEEEEEeCCCcEEEEECCC--Cccceeeeeccc-CCCCCceEEEEEccccccccCCCCCEEEEEECC---------CeEE
Confidence 4455556677888888876 4322 11111 11145678889998 88877666554 3588
Q ss_pred EEEcCCCc-eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC
Q 004816 225 AIALNGQN-IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD 282 (729)
Q Consensus 225 ~~dl~~g~-~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~ 282 (729)
++|+.++. ...+..........+|+|++..++..... ...|.++|+. +++
T Consensus 170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-------d~~v~~wd~~-t~~ 220 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER-------NGNIRIFDWT-LNL 220 (393)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET-------TSEEEEEETT-CCC
T ss_pred EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC-------CCEEEEEECC-CCc
Confidence 88887654 34455555666788999998754444422 3458888887 443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00016 Score=77.91 Aligned_cols=155 Identities=7% Similarity=-0.059 Sum_probs=86.8
Q ss_pred eEEEE--CCEEEE---EECCCCcEEEEeCCCCCC-----CC-------eecCCCCCCCceeeecceecCC-CCEEEEEEe
Q 004816 149 AFRIF--GDTVIF---SNYKDQRLYKHSIDSKDS-----SP-------LPITPDYGEPLVSYADGIFDPR-FNRYVTVRE 210 (729)
Q Consensus 149 ~~~~~--~~~i~~---~~~~~~~l~~~d~~~~~~-----~~-------~~lt~~~~~~~~~~~~~~~SPd-G~~l~~~~~ 210 (729)
..+++ +..++. +...++.|.+||+.+ + .. +.+... ...+...+|+|+ ++.|+....
T Consensus 97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRT--FSNEAKQQKRPFAYHKLLKDA----GGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp EEEECTTSCEEEEEEEETTTEEEEEEEEHHH--HHCTTCSSCCCSEEEECCCSG----GGSEEEEEECSSCTTEEEEEET
T ss_pred EEEEcCCCCEEEEEEeccCCCceEEEEEccc--cccCCcCCcceeeeeeccCCC----CCceEEEEECCCCCCEEEEEEC
Confidence 34444 444444 444567899999864 2 11 111111 345688899998 665554443
Q ss_pred ccCCCCCCcceEEEEEEcCCCceEEeeeC-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEe
Q 004816 211 DRRQDALNSTTEIVAIALNGQNIQVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV 289 (729)
Q Consensus 211 ~~~~~~~~~~~~l~~~dl~~g~~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~ 289 (729)
+ ..|.++|+.++.......+ .......+|||||++|+.... ...|.++|+. ++. ...+
T Consensus 171 D---------g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~--------dg~v~iwd~~--~~~--~~~~ 229 (434)
T 2oit_A 171 D---------GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ--------NGTVVQYLPT--LQE--KKVI 229 (434)
T ss_dssp T---------SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET--------TSCEEEECTT--CCE--EEEE
T ss_pred C---------CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC--------CCcEEEEccC--Ccc--cccc
Confidence 3 4588999987743322222 345677899999999987662 2348888876 332 2222
Q ss_pred cCCC---CCccccccCceeCCCCc-EEEEEecCCCc----eEEEEEEcCC
Q 004816 290 AGFD---PTIVESPTEPKWSSKGE-LFFVTDRKNGF----WNLHKWIESN 331 (729)
Q Consensus 290 ~~~~---~~~~~~~~~~~wspDG~-l~~~~~~~~g~----~~l~~~d~~~ 331 (729)
.... .+....+..+.|++++. ++..... .|. ..+..+++..
T Consensus 230 ~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~-dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 230 PCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA-DGTLETSPDVVMALLPK 278 (434)
T ss_dssp CCCTTCCTTSCEEEEEEEEEETTEEEEEEEET-TCCSSSCCEEEEEECCC
T ss_pred cCCcccCCCCceeEEEEEEecCceEEEEEccC-CCccCCCCceEEEEecc
Confidence 2111 00002556789999887 3333332 322 3466666654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00042 Score=71.96 Aligned_cols=199 Identities=13% Similarity=0.078 Sum_probs=107.0
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCc-cc-CCCCCcccccccccCCceEEEE--CCEEEEEEC--
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPS-DI-TPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNY-- 162 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~-~l-~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~-- 162 (729)
..+.++.++|.+++|+++......+...|++++..+ ++.. .+ ++..... .......+.++ ++.+++++.
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~~----~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN-NQLSRVIYLPPPITL----SNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT-TEEEEEEECCTTTSC----TTCCCCEEEEETTTTEEEEEECCS
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC-CeEEEEEECChhhcc----cccccceEEEecCCCEEEEEcCcc
Confidence 456788999866799987531000012466676552 2322 22 1111000 00111334555 456667665
Q ss_pred -CCCcEEEEeCCCCCCCCeecCCC-----CCC-----Cc----------------eeeecceecCCCCEEEEEEeccCCC
Q 004816 163 -KDQRLYKHSIDSKDSSPLPITPD-----YGE-----PL----------------VSYADGIFDPRFNRYVTVREDRRQD 215 (729)
Q Consensus 163 -~~~~l~~~d~~~~~~~~~~lt~~-----~~~-----~~----------------~~~~~~~~SPdG~~l~~~~~~~~~~ 215 (729)
....|+++|+++ ++..++... ++. .+ ......+|||||+.|++.....
T Consensus 142 ~~~~~i~v~d~~~--g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~--- 216 (343)
T 2qe8_A 142 DDKAALIRVDLQT--GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS--- 216 (343)
T ss_dssp GGGCEEEEEETTT--CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC---
T ss_pred CCCCeEEEEECCC--CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC---
Confidence 456899999986 554443211 000 00 1235688999999876664322
Q ss_pred CCCcceEEEEEEcCC---Cc---------eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe
Q 004816 216 ALNSTTEIVAIALNG---QN---------IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV 283 (729)
Q Consensus 216 ~~~~~~~l~~~dl~~---g~---------~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~ 283 (729)
..||+++.+. +. ...+ .......+.++++||+ |++..+ ....|.++|.+ +|+.
T Consensus 217 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~-------~~~~V~~~d~~-~G~~ 281 (343)
T 2qe8_A 217 -----TSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDL-------AHSAIGVITSA-DRAY 281 (343)
T ss_dssp -----SEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEG-------GGTEEEEEETT-TTEE
T ss_pred -----CeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEcc-------CCCeEEEEECC-CCCE
Confidence 4799998531 11 1111 1122345678999986 665553 34569999974 4654
Q ss_pred eeeEEecCCCCCccccccCceeCCCCcEEEEEec
Q 004816 284 YKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 317 (729)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~ 317 (729)
..+..... . .....+++++||+|+++...
T Consensus 282 --~~~~~~~~-~--~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 282 --KLLVTDEK-L--SWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp --EEEEECGG-G--SCEEEEEECTTSCEEEEECC
T ss_pred --EEEEECCc-e--ecCCeeEECCCCcEEEEeCc
Confidence 22222110 0 34567788888877766654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0027 Score=63.45 Aligned_cols=182 Identities=10% Similarity=-0.004 Sum_probs=98.8
Q ss_pred eEEEEEEcCCCceE-EeeeCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccc
Q 004816 221 TEIVAIALNGQNIQ-VLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 298 (729)
Q Consensus 221 ~~l~~~dl~~g~~~-~lt~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~ 298 (729)
..|+++|.++|+.. ++..+. .......++|||+.|+ +. ...|+.+|.+ |+..+. ...+.. .
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~--------~~~V~~~d~~--G~~~W~-~~~~~~----~ 77 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SY--------SKGAKMITRD--GRELWN-IAAPAG----C 77 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--EC--------BSEEEEECTT--SCEEEE-EECCTT----C
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eC--------CCCEEEECCC--CCEEEE-EcCCCC----c
Confidence 57999999888764 333222 2456678999998555 31 2348888763 654332 222211 2
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeE
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 378 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~ 378 (729)
....+.+++||++++.... ...+++.+|+++.....+.-.. ....+.. ......+++ +++ ++++.. +..
T Consensus 78 ~~~~~~~~~dG~~lv~~~~--~~~~v~~vd~~Gk~l~~~~~~~-~~~~~~~--~~~~v~~~~---~G~-~lv~~~--~~~ 146 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCG--HPSTILEVNMKGEVLSKTEFET-GIERPHA--QFRQINKNK---KGN-YLVPLF--ATS 146 (276)
T ss_dssp EEEEEEECTTSCEEEEEES--TTEEEEEECTTSCEEEEEEECC-SCSSGGG--SCSCCEECT---TSC-EEEEET--TTT
T ss_pred cccccEECCCCCEEEEecC--CCCEEEEEeCCCCEEEEEeccC-CCCcccc--cccCceECC---CCC-EEEEec--CCC
Confidence 3345678999995554332 2467888998665444443111 1111111 011223332 444 444443 334
Q ss_pred EEEEEECCCCceEeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 379 YLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 379 ~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.|+.+|.+++.+..+..+..........++.+++..... ..++.+|.++|+.
T Consensus 147 ~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~---~~v~~~d~~tG~~ 198 (276)
T 3no2_A 147 EVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDA---HCFVQLNLESNRI 198 (276)
T ss_dssp EEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTT---SEEEEECTTTCCE
T ss_pred EEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCC---CeEEEEeCcCCcE
Confidence 688889985555565544333222233445555544332 3689999887763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0078 Score=61.03 Aligned_cols=148 Identities=8% Similarity=0.024 Sum_probs=82.7
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
+.|++++...++|++++.++ +....+. . .......+++|||+ | |+.+.... ...|++++..+|+.+
T Consensus 43 g~lyv~d~~~~~I~~~d~~g--~~~~~~~-~----~~~p~gia~~~dG~-l-~vad~~~~-----~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDG--NQQIHAT-V----EGKVSGLAFTSNGD-L-VATGWNAD-----SIPVVSLVKSDGTVE 108 (306)
T ss_dssp SCEEEEETTTTEEEEECTTC--CEEEEEE-C----SSEEEEEEECTTSC-E-EEEEECTT-----SCEEEEEECTTSCEE
T ss_pred CCEEEEeCCCCeEEEECCCC--ceEEEEe-C----CCCceeEEEcCCCc-E-EEEeccCC-----cceEEEEcCCCCeEE
Confidence 35777776778999999875 4333322 2 23456788999999 4 33332110 135899998888887
Q ss_pred EeeeC--CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecC------CCCCccccccCceeC
Q 004816 235 VLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG------FDPTIVESPTEPKWS 306 (729)
Q Consensus 235 ~lt~~--~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~------~~~~~~~~~~~~~ws 306 (729)
.+... ..+..+++..+++ .+++... ....||++|.. +++.. +..... .... ......+ +
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~-~~~v~d~-------~~g~i~~~d~~-~~~~~-v~~~~~~~~~~~~~~~-~~~pngi--s 175 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDT-QYLTADS-------YRGAIWLIDVV-QPSGS-IWLEHPMLARSNSESV-FPAANGL--K 175 (306)
T ss_dssp EEEECTTCSCEEEEEESSSS-EEEEEET-------TTTEEEEEETT-TTEEE-EEEECGGGSCSSTTCC-SCSEEEE--E
T ss_pred EEEeCCCccccCcccccCCC-cEEEEEC-------CCCeEEEEeCC-CCcEe-EEEECCccccccccCC-CCcCCCc--C
Confidence 66542 2334556655554 4544431 13469999976 44211 111110 0000 0111223 7
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCC
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~ 331 (729)
+||+.+|+++. +...|+++++++
T Consensus 176 ~dg~~lyv~d~--~~~~I~~~~~~~ 198 (306)
T 2p4o_A 176 RFGNFLYVSNT--EKMLLLRIPVDS 198 (306)
T ss_dssp EETTEEEEEET--TTTEEEEEEBCT
T ss_pred cCCCEEEEEeC--CCCEEEEEEeCC
Confidence 88885555554 446788998865
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00058 Score=72.37 Aligned_cols=66 Identities=18% Similarity=0.040 Sum_probs=43.2
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
++++.+...++.|.+||+.++ +....+... ...+...+|+|++..++.+...+ ..|.++|+.+++.
T Consensus 156 ~~~las~s~D~tv~~Wd~~~~-~~~~~~~~~----~~~v~~v~~~p~~~~~l~~~~~d--------~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 156 EQVIASVGDDCTLIIWRLTDE-GPILAGYPL----SSPGISVQFRPSNPNQLIVGERN--------GNIRIFDWTLNLS 221 (393)
T ss_dssp EEEEEEEETTSEEEEEEEETT-EEEEEEEEC----SSCEEEEEEETTEEEEEEEEETT--------SEEEEEETTCCC-
T ss_pred CCEEEEEECCCeEEEEECCCC-ceeeeecCC----CCCcEEEEECCCCCceEEecCCC--------CEEEEEECCCCcc
Confidence 467777778889999998751 222333322 23456788999997655555433 4688889887653
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00018 Score=76.99 Aligned_cols=136 Identities=12% Similarity=0.102 Sum_probs=81.0
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-h---------------hhHHHhhCCcEE
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-L---------------SIQYWTSRGWAF 524 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~---------------~~~~la~~G~~v 524 (729)
-.+... ++..+..|++...+ ..+..|+||++||||++......- . .-..| .+-.++
T Consensus 24 Gyv~v~-~~~~lfy~f~~s~~------~~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~sw-~~~~~~ 95 (452)
T 1ivy_A 24 GYLKSS-GSKHLHYWFVESQK------DPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSW-NLIANV 95 (452)
T ss_dssp EEEECS-TTEEEEEEEECCSS------CGGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCG-GGSSEE
T ss_pred EEEeeC-CCCeEEEEEEEcCC------CCCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCcc-cccccE
Confidence 344444 57889988886543 134579999999999875432110 0 00011 234789
Q ss_pred EEecCCCCCCCchhHHHhhccCCCcc---cHHHHH-HHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-----CCCcc
Q 004816 525 VDVNYGGSTGYGREFRERLLGRWGIV---DVNDCC-SCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-----FRDTF 595 (729)
Q Consensus 525 ~~~d~rGs~g~g~~~~~~~~~~~~~~---~~~D~~-~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-----~~~~~ 595 (729)
+.+|.+-+.|+... . ...+... ...|+. ...+|+...+.....++.|+|+|+||..+-.++. .+-.+
T Consensus 96 lfiDqP~GtGfS~~--~--~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l 171 (452)
T 1ivy_A 96 LYLESPAGVGFSYS--D--DKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNL 171 (452)
T ss_dssp EEECCSTTSTTCEE--S--SCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCE
T ss_pred EEEecCCCCCcCCc--C--CCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCcccc
Confidence 99996433343321 1 1112111 234443 3444555544455689999999999996655543 35678
Q ss_pred eEEEEeccccChh
Q 004816 596 KAGASLYGVADLS 608 (729)
Q Consensus 596 ~a~v~~~~~~d~~ 608 (729)
+++++.+|+.|..
T Consensus 172 ~g~~ign~~~d~~ 184 (452)
T 1ivy_A 172 QGLAVGNGLSSYE 184 (452)
T ss_dssp EEEEEESCCSBHH
T ss_pred ceEEecCCccChh
Confidence 9999999988753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.012 Score=58.84 Aligned_cols=226 Identities=10% Similarity=0.031 Sum_probs=121.1
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.+++.....+.|++++.++ +...+.... .........++++|+. ++. ... ...|++++.+ ++.+.
T Consensus 32 ~l~v~~~~~~~v~~~~~~~---~~~~~~~~~--~~~~~~~i~~~~~g~l-~v~-~~~-------~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 32 KVWFTQHKANKISSLDQSG---RIKEFEVPT--PDAKVMCLIVSSLGDI-WFT-ENG-------ANKIGKLSKK-GGFTE 96 (300)
T ss_dssp CEEEEETTTTEEEEECTTS---CEEEEECSS--TTCCEEEEEECTTSCE-EEE-ETT-------TTEEEEECTT-SCEEE
T ss_pred CEEEEcCCCCeEEEECCCC---ceEEEECCC--CCCcceeEEECCCCCE-EEE-ecC-------CCeEEEECCC-CCeEE
Confidence 4556655567899998763 333332111 0134467788999983 333 321 2469999988 66654
Q ss_pred eee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 236 LVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 236 lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
+.. ......+..++|||+ |++... ....|++++.+ ++.... ...... .....+.+++||++++
T Consensus 97 ~~~~~~~~~~~~i~~~~~g~-l~v~~~-------~~~~i~~~~~~--g~~~~~-~~~~~~----~~~~~i~~d~~g~l~v 161 (300)
T 2qc5_A 97 YPLPQPDSGPYGITEGLNGD-IWFTQL-------NGDRIGKLTAD--GTIYEY-DLPNKG----SYPAFITLGSDNALWF 161 (300)
T ss_dssp EECSSTTCCEEEEEECSTTC-EEEEET-------TTTEEEEECTT--SCEEEE-ECSSTT----CCEEEEEECTTSSEEE
T ss_pred ecCCCCCCCCccceECCCCC-EEEEcc-------CCCeEEEECCC--CCEEEc-cCCCCC----CCceeEEECCCCCEEE
Confidence 432 223455678899987 555442 13458888765 544221 122222 3445678889998655
Q ss_pred EEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
... +...|+++++ +++...+.. ...... ...+.+. .++.+|+.... ...|++++. +++...+
T Consensus 162 ~~~---~~~~i~~~~~-~g~~~~~~~-~~~~~~------~~~i~~d----~~g~l~v~~~~--~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 162 TEN---QNNSIGRITN-TGKLEEYPL-PTNAAA------PVGITSG----NDGALWFVEIM--GNKIGRITT-TGEISEY 223 (300)
T ss_dssp EET---TTTEEEEECT-TCCEEEEEC-SSTTCC------EEEEEEC----TTSSEEEEETT--TTEEEEECT-TCCEEEE
T ss_pred Eec---CCCeEEEECC-CCcEEEeeC-CCCCCC------cceEEEC----CCCCEEEEccC--CCEEEEEcC-CCcEEEE
Confidence 543 2346899998 565554431 111111 1123332 34456665432 336888888 4555444
Q ss_pred cc--CCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 394 DI--PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 394 t~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.. .......+ ...++.+++... ....|++++. .++.
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~---~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEW---GANQIGRITN-DNTI 262 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEET---TTTEEEEECT-TSCE
T ss_pred ECCCCCCCceEEEECCCCCEEEecc---CCCeEEEECC-CCcE
Confidence 32 23345555 333445444332 1346888887 3443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.005 Score=60.23 Aligned_cols=213 Identities=11% Similarity=0.230 Sum_probs=118.2
Q ss_pred HhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC-CEEEEEE
Q 004816 84 VSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSN 161 (729)
Q Consensus 84 i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~ 161 (729)
|-.....++++.++| ++.+|.+..++ -.|+..+.. |+...-++... ...+ ..+++.+ +.++++.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~-----~~I~~ld~~--g~v~~~i~l~g-----~~D~--EGIa~~~~g~~~vs~ 87 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKP-----AAIVEMTTN--GDLIRTIPLDF-----VKDL--ETIEYIGDNQFVISD 87 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETT-----EEEEEEETT--CCEEEEEECSS-----CSSE--EEEEECSTTEEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCC-----CeEEEEeCC--CCEEEEEecCC-----CCCh--HHeEEeCCCEEEEEE
Confidence 334445689999999 78888877542 247777766 33322221110 0011 1233333 3555666
Q ss_pred CCCCcEEEEeCCCCCCCC---eecCC--CCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE--cCCCceE
Q 004816 162 YKDQRLYKHSIDSKDSSP---LPITP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA--LNGQNIQ 234 (729)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~---~~lt~--~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d--l~~g~~~ 234 (729)
+..++|++++++.. +.. ..+.- ........+...+|+|++++|+.+.+..+ ..||.++ +.+...+
T Consensus 88 E~~~~l~~~~v~~~-~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p-------~~i~~~~g~~~~~~l~ 159 (255)
T 3qqz_A 88 ERDYAIYVISLTPN-SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP-------IEVYKVNGLLSSNELH 159 (255)
T ss_dssp TTTTEEEEEEECTT-CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS-------EEEEEEESTTCSSCCE
T ss_pred CCCCcEEEEEcCCC-CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC-------ceEEEEcccccCCcee
Confidence 67778999887652 221 11211 00011233567899999999887776542 4799888 2222233
Q ss_pred Eeee-------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec-CCCC--CccccccCce
Q 004816 235 VLVS-------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-GFDP--TIVESPTEPK 304 (729)
Q Consensus 235 ~lt~-------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~-~~~~--~~~~~~~~~~ 304 (729)
.+.. ......+.++.|.-.+|+.++ +.. ..|..+|.+ |+......+. +... ........++
T Consensus 160 i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS-~~s------~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia 230 (255)
T 3qqz_A 160 ISKDKALQRQFTLDDVSGAEFNQQKNTLLVLS-HES------RALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVA 230 (255)
T ss_dssp EEECHHHHHTCCSSCCCEEEEETTTTEEEEEE-TTT------TEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEE
T ss_pred eecchhhccccccCCceeEEEcCCCCeEEEEE-CCC------CeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeE
Confidence 3311 112346778999888888887 433 448888865 5543333333 2110 0001335678
Q ss_pred eCCCCcEEEEEecCCCceEEEEEEcCC
Q 004816 305 WSSKGELFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 305 wspDG~l~~~~~~~~g~~~l~~~d~~~ 331 (729)
+.++|+||.++.. ..+|++....
T Consensus 231 ~d~~G~lyIvsE~----n~~y~f~~~~ 253 (255)
T 3qqz_A 231 MDASGNIYIVSEP----NRFYRFTPQS 253 (255)
T ss_dssp ECTTCCEEEEETT----TEEEEEEC--
T ss_pred ECCCCCEEEEcCC----ceEEEEEecC
Confidence 9999987766543 3677776543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.11 Score=57.76 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=35.7
Q ss_pred cEEEEEEecCCCCeeeeEEecCCCCCccc-cccCceeC---CCCc---EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 270 AELWVGYISENGDVYKRVCVAGFDPTIVE-SPTEPKWS---SKGE---LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 270 ~~l~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~~ws---pDG~---l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
..|+.+|.+ +|+..+.......+ .|.. ....|... .||+ +++.... +| .|+.+|.++|+..
T Consensus 272 ~~v~Ald~~-tG~~~W~~~~~~~d-~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~-~G--~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 272 MTIWGRDLD-TGMAKWGYQKTPHD-EWDFAGVNQMVLTDQPVNGKMTPLLSHIDR-NG--ILYTLNRENGNLI 339 (571)
T ss_dssp TEEEEEETT-TCCEEEEEESSTTC-SSCCCCCCCCEEEEEEETTEEEEEEEEECT-TS--EEEEEETTTCCEE
T ss_pred EEEEEEecC-CCcEEEEecCCCCc-ccccccCCCCEEEecccCCcEEEEEEEeCC-Cc--EEEEEECCCCCEE
Confidence 469999998 88876654443322 1101 12344443 3674 4444444 33 6899999888754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0094 Score=63.75 Aligned_cols=268 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred EEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEEEeCCC
Q 004816 95 AVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDS 174 (729)
Q Consensus 95 ~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~ 174 (729)
.+++++....+.. .+|...+|..... +....+... ...+.++.+ ++.++++...++.|.+||+.+
T Consensus 138 ~~~~d~~~l~~g~---~dg~i~iwd~~~~---~~~~~~~~h--------~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 138 CLQYDDQKIVSGL---RDNTIKIWDKNTL---ECKRILTGH--------TGSVLCLQY-DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp EEECCSSEEEEEE---SSSCEEEEESSSC---CEEEEECCC--------SSCEEEEEC-CSSEEEEEETTSCEEEEESSS
T ss_pred EEEECCCEEEEEe---CCCeEEEEeCCCC---eEEEEEcCC--------CCcEEEEEE-CCCEEEEEcCCCeEEEEECCC
Q ss_pred CCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce----EEeeeCCCeeeeeeeCC
Q 004816 175 KDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI----QVLVSGSDFYAFPRMDP 250 (729)
Q Consensus 175 ~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~----~~lt~~~~~~~~~~~SP 250 (729)
+ .....+... ...+....|+++ .+++...+ ..|.++|+.+++. ..+...........|
T Consensus 203 ~-~~~~~~~~h----~~~v~~l~~~~~---~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 203 G-EMLNTLIHH----CEAVLHLRFNNG---MMVTCSKD--------RSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp C-CEEEEECCC----CSCEEEEECCTT---EEEEEETT--------SCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred C-cEEEEEcCC----CCcEEEEEEcCC---EEEEeeCC--------CcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--
Q ss_pred CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEc
Q 004816 251 RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 251 DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~ 329 (729)
||+.|+..+ ....|.++|+. +++. ...+.+.. ..+..+.| +++ ++....+ ..|.++|.
T Consensus 265 ~~~~l~s~~--------~dg~i~vwd~~-~~~~--~~~~~~~~----~~v~~~~~--~~~~l~~g~~d----g~i~iwd~ 323 (435)
T 1p22_A 265 DDKYIVSAS--------GDRTIKVWNTS-TCEF--VRTLNGHK----RGIACLQY--RDRLVVSGSSD----NTIRLWDI 323 (435)
T ss_dssp ETTEEEEEE--------TTSEEEEEETT-TCCE--EEEEECCS----SCEEEEEE--ETTEEEEEETT----SCEEEEET
T ss_pred CCCEEEEEe--------CCCeEEEEECC-cCcE--EEEEcCCC----CcEEEEEe--CCCEEEEEeCC----CeEEEEEC
Q ss_pred CCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCC--------ceEeeccCCcce
Q 004816 330 SNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH--------SLSLLDIPFTDI 400 (729)
Q Consensus 330 ~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g--------~~~~lt~~~~~v 400 (729)
.+++..... .....+....|. +.++++...+|...+|-+..... ....+......+
T Consensus 324 ~~~~~~~~~~~h~~~v~~~~~~---------------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v 388 (435)
T 1p22_A 324 ECGACLRVLEGHEELVRCIRFD---------------NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 388 (435)
T ss_dssp TTCCEEEEECCCSSCEEEEECC---------------SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCC
T ss_pred CCCCEEEEEeCCcCcEEEEEec---------------CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCe
Q ss_pred EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCccee
Q 004816 401 DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA 435 (729)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~ 435 (729)
..+.. ++..++.++... .+..+|+.++....
T Consensus 389 ~~l~~-~~~~l~s~s~Dg---~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 389 FRLQF-DEFQIVSSSHDD---TILIWDFLNDPAAQ 419 (435)
T ss_dssp CCEEE-CSSCEEECCSSS---EEEEEC--------
T ss_pred EEEEe-CCCEEEEEeCCC---EEEEEECCCCCCcc
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0091 Score=60.28 Aligned_cols=241 Identities=5% Similarity=-0.150 Sum_probs=128.4
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc---eEEeeeCCC-
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN---IQVLVSGSD- 241 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~---~~~lt~~~~- 241 (729)
+++.+|+.+ ++-+.+...+ ..+.......-+++ |+.+..... ......++++|+.+++ -+.+..-+.
T Consensus 32 ~~~~~d~~~--~~W~~~~~~p---~~r~~~~~~~~~~~-l~v~GG~~~---~~~~~~~~~~d~~~~~~~~W~~~~~~p~~ 102 (301)
T 2vpj_A 32 VVEKYDPKT--QEWSFLPSIT---RKRRYVASVSLHDR-IYVIGGYDG---RSRLSSVECLDYTADEDGVWYSVAPMNVR 102 (301)
T ss_dssp CEEEEETTT--TEEEECCCCS---SCCBSCEEEEETTE-EEEECCBCS---SCBCCCEEEEETTCCTTCCCEEECCCSSC
T ss_pred EEEEEcCCC--CeEEeCCCCC---hhhccccEEEECCE-EEEEcCCCC---CccCceEEEEECCCCCCCeeEECCCCCCC
Confidence 689999987 6666665432 12222223333444 444322211 1124679999999988 777754221
Q ss_pred eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCC--
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN-- 319 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~-- 319 (729)
....-...-++ +|+......... ...+++++|+. +.+.......+.. .. ......-+++||+......
T Consensus 103 r~~~~~~~~~~-~lyv~GG~~~~~--~~~~~~~~d~~-~~~W~~~~~~p~~-----r~-~~~~~~~~~~iyv~GG~~~~~ 172 (301)
T 2vpj_A 103 RGLAGATTLGD-MIYVSGGFDGSR--RHTSMERYDPN-IDQWSMLGDMQTA-----RE-GAGLVVASGVIYCLGGYDGLN 172 (301)
T ss_dssp CBSCEEEEETT-EEEEECCBCSSC--BCCEEEEEETT-TTEEEEEEECSSC-----CB-SCEEEEETTEEEEECCBCSSC
T ss_pred ccceeEEEECC-EEEEEcccCCCc--ccceEEEEcCC-CCeEEECCCCCCC-----cc-cceEEEECCEEEEECCCCCCc
Confidence 11111222244 465554222111 24579999988 6655333222211 11 1222234677665543311
Q ss_pred CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC---eEEEEEEECCCCceEeeccC
Q 004816 320 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g---~~~ly~~d~~~g~~~~lt~~ 396 (729)
....++++|+.+++.+.+.+... +... ..... -++.||+....++ ...++.+|+++.+++.+...
T Consensus 173 ~~~~~~~~d~~~~~W~~~~~~p~----~r~~---~~~~~-----~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 173 ILNSVEKYDPHTGHWTNVTPMAT----KRSG---AGVAL-----LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp BCCCEEEEETTTTEEEEECCCSS----CCBS---CEEEE-----ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred ccceEEEEeCCCCcEEeCCCCCc----cccc---ceEEE-----ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence 13569999999999988853321 1110 11122 2345555543322 35799999999999888643
Q ss_pred Ccc--eEEeeeeCCEEEEEEeCCCCC--ceEEEEEcCCCcceeee
Q 004816 397 FTD--IDNITLGNDCLFVEGASGVEP--SSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 397 ~~~--v~~~~~~~~~~~~~~~~~~~~--~~ly~~d~~~~~~~~lt 437 (729)
... ......-++.++++.+..... ..++.+|+++.+.+++.
T Consensus 241 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 285 (301)
T 2vpj_A 241 TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVT 285 (301)
T ss_dssp SSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred CCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcC
Confidence 211 112233366777776544332 45899999888876654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 729 | ||||
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 4e-28 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 6e-25 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 5e-23 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 2e-22 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 1e-20 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 1e-19 | |
| d1ufoa_ | 238 | c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu | 5e-19 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 1e-18 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 5e-18 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 4e-17 | |
| d2jbwa1 | 360 | c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine h | 7e-16 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 5e-13 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 6e-12 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 2e-11 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 3e-11 | |
| d1jjia_ | 311 | c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeogl | 3e-11 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 6e-11 | |
| d1jfra_ | 260 | c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [Ta | 2e-09 | |
| d1jjfa_ | 255 | c.69.1.2 (A:) Feruloyl esterase domain of the cell | 2e-09 | |
| d1qlwa_ | 318 | c.69.1.15 (A:) A novel bacterial esterase {Alcalig | 1e-08 | |
| d2pbla1 | 261 | c.69.1.2 (A:1-261) Uncharacterized protein TM1040_ | 2e-08 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 3e-08 | |
| d1dina_ | 233 | c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas | 6e-08 | |
| d1u4na_ | 308 | c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus a | 8e-08 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 5e-07 | |
| d2h1ia1 | 202 | c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cer | 1e-06 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 1e-06 | |
| d1lzla_ | 317 | c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [Ta | 3e-06 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 1e-05 | |
| d1auoa_ | 218 | c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluor | 9e-05 | |
| d1jkma_ | 358 | c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, | 1e-04 | |
| d2r8ba1 | 203 | c.69.1.14 (A:44-246) Uncharacterized protein Atu24 | 1e-04 | |
| d3b5ea1 | 209 | c.69.1.14 (A:7-215) Uncharacterized protein Mll837 | 1e-04 | |
| d1uxoa_ | 186 | c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus | 4e-04 | |
| d1k8qa_ | 377 | c.69.1.6 (A:) Gastric lipase {Dog (Canis familiari | 6e-04 | |
| d1fj2a_ | 229 | c.69.1.14 (A:) Acyl protein thioesterase 1 {Human | 0.003 |
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (278), Expect = 4e-28
Identities = 41/258 (15%), Positives = 82/258 (31%), Gaps = 15/258 (5%)
Query: 461 IEFPT-EVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSIQY 516
+E+ E+ P+ + PLL+ G P S++ ++
Sbjct: 3 VEYRDIEIDDYNLPMQILKPAT----FTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVM 58
Query: 517 WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCIT 576
+S G V + GS G + + R G+++ D ++ D R+ +
Sbjct: 59 VSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVF 118
Query: 577 GGSAGGYTTLAALAFRD-----TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD 631
G GGY + L + TF G++L + D + + E + + +
Sbjct: 119 GKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKL--YASAFSERYLGLHGLDNRAY 176
Query: 632 YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691
K ++ D+ + ++ L +L Y E H F
Sbjct: 177 EMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFT 236
Query: 692 KAENIKFTLEQQMVFFAR 709
+ + + FF
Sbjct: 237 SSSLKQHLYRSIINFFVE 254
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 102 bits (254), Expect = 6e-25
Identities = 52/258 (20%), Positives = 87/258 (33%), Gaps = 10/258 (3%)
Query: 457 LP-ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNL 512
+P + ++F + K + P + +K PLL+ + GP S+ LN
Sbjct: 1 MPSKKLDF-IILNETKFWYQMILPPH----FDKSKKYPLLLDVYAGPCSQKADTVFRLNW 55
Query: 513 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572
+ ++ + GS G + + R G +V D A G D KR
Sbjct: 56 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 115
Query: 573 LCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD 631
+ I G S GGY T L FK G ++ V+ + + +
Sbjct: 116 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 175
Query: 632 YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691
+ +L G D V Q+ +I KAL + G+ + Y E HG
Sbjct: 176 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIA 235
Query: 692 KAENIKFTLEQQMVFFAR 709
+ + F +
Sbjct: 236 SSTAHQHIYTHMSHFIKQ 253
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 98.6 bits (244), Expect = 5e-23
Identities = 48/315 (15%), Positives = 86/315 (27%), Gaps = 57/315 (18%)
Query: 437 DFKVVWSSSPDTLKYKSYFSLPELIEFPTE-----------VPGQKAYAYYYPPSNPIYQ 485
DF W + + + E +E + GQ+ + P
Sbjct: 22 DFDEFWEETLAESEKFPLDPVFERMESHLKTVEAYDVTFSGYRGQRIKGWLLVPKLE--- 78
Query: 486 ASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY---------------- 529
EEK P +V+ G +W S G+ ++
Sbjct: 79 ---EEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYP 132
Query: 530 -----GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 584
G+ + D + D++R+ I GGS GG
Sbjct: 133 EGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGI 192
Query: 585 TLAALAFRDTFKAGASLYGVAD-----LSMLRAETHKFESRYIDNLVGSEKDYYEKSP-- 637
LA A KA + ++ + + ++ E+ +
Sbjct: 193 ALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYF 252
Query: 638 --INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695
+NF + P + GL D + PP Y P + Y H +
Sbjct: 253 DGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNYYAG---PKEIRIYPYNNHEGGGS-- 307
Query: 696 IKFTLEQQMVFFARV 710
F +Q+ F ++
Sbjct: 308 --FQAVEQVKFLKKL 320
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 95.0 bits (234), Expect = 2e-22
Identities = 54/264 (20%), Positives = 84/264 (31%), Gaps = 9/264 (3%)
Query: 446 PDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE 505
P+ L+ + L+ + G + Y P +V HGGP +E
Sbjct: 2 PEDLRRS--IAGSRLVWVESF-DGSRVPTYVLES------GRAPTPGPTVVLVHGGPFAE 52
Query: 506 ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 565
+ + G+ V NY GSTGYG E+R +++G ++ D + A + S
Sbjct: 53 DSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARES 112
Query: 566 GKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 625
G A E + + A V M F +
Sbjct: 113 GLASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLT 172
Query: 626 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685
GS + +SPIN VD+ P+ L D P ++ L G
Sbjct: 173 GGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPD 232
Query: 686 EQHGFRKAENIKFTLEQQMVFFAR 709
H E+ L + F A
Sbjct: 233 AGHAINTMEDAVKILLPAVFFLAT 256
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 91.3 bits (226), Expect = 1e-20
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 7/136 (5%)
Query: 567 KADEKRLCITGGSAGGY-TTLAALAFRDTFKAGASLYGVADL----SMLRAETHKFESRY 621
+ + ++G ++GGY +A+ D F G ++ +
Sbjct: 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPS 66
Query: 622 IDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE--NGLPVA 679
I + K + + + I ++ G D V P+ ++ L N V+
Sbjct: 67 ITTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVS 126
Query: 680 LVEYEGEQHGFRKAEN 695
V G H F N
Sbjct: 127 YVTTTGAVHTFPTDFN 142
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 87.6 bits (215), Expect = 1e-19
Identities = 43/273 (15%), Positives = 71/273 (26%), Gaps = 24/273 (8%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 518
I +P++ G K + + P + +GG ++S +
Sbjct: 8 VQIFYPSK-DGTKIPMFIVHKKG----IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFV 62
Query: 519 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC-CSCATFLVGSGKADEKRLCITG 577
+ V G E + + D A +L+ G KRL I G
Sbjct: 63 RHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTING 122
Query: 578 GSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEK-- 635
GS GG R + + + D K ++E
Sbjct: 123 GSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLI 182
Query: 636 --------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL-------KENGLPVAL 680
D ++L D V P + K L ++ P+ +
Sbjct: 183 KYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLI 242
Query: 681 VEYEGEQHGFRKAENIKFTLEQQMV-FFARVVG 712
HG K M F AR +
Sbjct: 243 HVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 275
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Score = 84.8 bits (208), Expect = 5e-19
Identities = 36/234 (15%), Positives = 60/234 (25%), Gaps = 20/234 (8%)
Query: 482 PIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541
+ PE LL+ HG S IL L + + RG+ + +
Sbjct: 14 SVLARIPEAPKALLLALHGLQGS-KEHILAL-LPGYAERGFLLLAFDAPRHGEREGPPPS 71
Query: 542 RLLGRWGIVDVNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAALAFRDTFKA 597
R+ + L + GGS G + LA +
Sbjct: 72 SKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRG 131
Query: 598 GASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK 657
+ G L + + E P++ G D
Sbjct: 132 VLAFIGSGFPMKLPQGQVVEDPGVLALYQAPPATRGEA-------YGGVPLLHLHGSRDH 184
Query: 658 VVPPDQARKIYKALKENGLP--VALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709
+VP + K +AL+ + +A EG H + F
Sbjct: 185 IVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTPLM-----ARVGLAFLEH 233
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 85.2 bits (209), Expect = 1e-18
Identities = 57/312 (18%), Positives = 93/312 (29%), Gaps = 55/312 (17%)
Query: 437 DFKVVWSSS--------PDTLKYKSYFSLP----ELIEFPTEVPGQKAYAYYYPPSNPIY 484
DF W S + + + + + + +Y P
Sbjct: 23 DFSEFWKLSLEELAKVQAEPDLQPVDYPADGVKVYRLTYKS-FGNARITGWYAVPDK--- 78
Query: 485 QASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 544
E P +VK HG S + W G+A + G
Sbjct: 79 ----EGPHPAIVKYHGYNAS--YDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHG 132
Query: 545 GRWGIVD--------------VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590
G + D + + DE R+ +TGGS GG T+AA A
Sbjct: 133 HALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAA 192
Query: 591 FRDTFKAGASLYGV-----------ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPIN 639
D KA + Y + L + + + V + K +N
Sbjct: 193 LSDIPKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMN 252
Query: 640 FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFT 699
D+ P+++ GL DKV PP Y L+ L Y H + A
Sbjct: 253 LADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLET---KKELKVYRYFGHEYIPAFQ---- 305
Query: 700 LEQQMVFFARVV 711
+++ FF +++
Sbjct: 306 -TEKLAFFKQIL 316
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 82.3 bits (202), Expect = 5e-18
Identities = 35/277 (12%), Positives = 61/277 (22%), Gaps = 36/277 (12%)
Query: 446 PDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE 505
P+ S F F + + + P+ +P P+L G +
Sbjct: 1 PNIADKGSVFYHFSATSFDSVDGTRHYRVWTAVPNT----TAPASGYPILYMLDGNAVMD 56
Query: 506 ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 565
R L Q V V Y + + R D S
Sbjct: 57 -RLDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSG 115
Query: 566 GKA--------------------DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVA 605
G D +R + G S GG L + F++ S
Sbjct: 116 GSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSYYSASP-- 173
Query: 606 DLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQAR 665
+ + + + V +
Sbjct: 174 ---------SLGRGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIH 224
Query: 666 KIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQ 702
LK+ G+ ++ HG + + L
Sbjct: 225 TTLTILKDKGVNAVFWDFPNLGHGPMFNASFRQALLD 261
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 80.4 bits (197), Expect = 4e-17
Identities = 34/277 (12%), Positives = 68/277 (24%), Gaps = 39/277 (14%)
Query: 469 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVN 528
GQ+ + + PP K ++ + G +Y ++ G+ +
Sbjct: 14 GQELHVWETPPKEN-----VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYD 66
Query: 529 YGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA 588
G + G + + + + S
Sbjct: 67 SLHHVGLSSGSIDEFTMTTGKNSLCTVYHW------LQTKGTQNIGLIAASLSARVAYEV 120
Query: 589 LAFRDTFKAGASLYGVADL---------------------SMLRAETHKFESRYIDNLVG 627
+ GV +L + L E HK S
Sbjct: 121 -ISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCF 179
Query: 628 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687
S ++ V S P+I F D V ++ + ++ L G
Sbjct: 180 EHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTG--HCKLYSLLGSS 237
Query: 688 HGFRKAENIKFTLEQQMVFFARVV--GHFDVADEIIP 722
H + + Q + A + G ++ + I
Sbjct: 238 HDLGENLVVLRNFYQSVTKAAIAMDGGSLEIDVDFIE 274
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 77.7 bits (190), Expect = 7e-16
Identities = 42/248 (16%), Positives = 68/248 (27%), Gaps = 27/248 (10%)
Query: 450 KYKSYFSLP-ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG 508
K S P E E + Y P P P ++ G ++ +
Sbjct: 97 KAAPLLSPPAERHELVVDG--IPMPVYVRIPEGP-------GPHPAVIMLGGLEST--KE 145
Query: 509 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568
RG A + G R V D L
Sbjct: 146 ESFQMENLVLDRGMATATFDGPGQGEMFEYKRIAGDYEKYTSAVVDL------LTKLEAI 199
Query: 569 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETH------KFESRYI 622
+ + G S GG L + A A S G +DL ET K+ S+
Sbjct: 200 RNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDYWDLETPLTKESWKYVSKVD 259
Query: 623 DNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682
+ + + + +CP + G+ D+ VP + + + + LV
Sbjct: 260 TLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAEH--LNLVV 316
Query: 683 YEGEQHGF 690
+ H
Sbjct: 317 EKDGDHCC 324
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 67.3 bits (163), Expect = 5e-13
Identities = 33/230 (14%), Positives = 62/230 (26%), Gaps = 23/230 (10%)
Query: 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 517
+ I + +E + + + E+ PL V G +++ + +
Sbjct: 15 AKEIIWKSERLKNSRRVWIFTTGD-----VTAEERPLAVLLDGEFWAQSMPV-WPVLTSL 68
Query: 518 TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCIT 576
T R V L V ++ R +
Sbjct: 69 THRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVA 128
Query: 577 GGSAGGYTTLAA-LAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEK 635
G S GG + L A L + + F S G + E EK
Sbjct: 129 GQSFGGLSALYAGLHWPERFGCVLSQSGS--------------YWWPHRGGQQEGVLLEK 174
Query: 636 SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685
V I+L G+ + ++ + +Y L + + +G
Sbjct: 175 LKAGEVSAEGLRIVLEAGIREPMIMR-ANQALYAQLHPIKESIFWRQVDG 223
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 65.7 bits (159), Expect = 6e-12
Identities = 39/292 (13%), Positives = 77/292 (26%), Gaps = 67/292 (22%)
Query: 478 PPSNPIYQASPEEKPPLLVKS---HGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 534
+ Q P++ + P G Y+ +RG+A + V G+
Sbjct: 90 SHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRS 149
Query: 535 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD--------------EKRLCITGGSA 580
+ + +L G +A ++ +TG S
Sbjct: 150 SDGFQTS-----GDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSY 204
Query: 581 GGYTTLAALAF-RDTFKAGASLYGVADLSMLRAETHKFESR------------------- 620
G A + + + G++ E S
Sbjct: 205 LGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRN 264
Query: 621 -----------------------YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK 657
+ +++++ + DK +++ GL+D
Sbjct: 265 LDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDW 324
Query: 658 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709
V P+QA +KAL E + G ++I F E +F
Sbjct: 325 NVTPEQAYNFWKALPEGH-AKHAFLHRGAHIYMNSWQSIDF-SETINAYFVA 374
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 62.7 bits (151), Expect = 2e-11
Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 32/237 (13%)
Query: 482 PIYQASPEEKPPLLVKSHGGP-TSEARGILNLS--IQYWTSRGWAFVDVNYGGSTGYGRE 538
+ S P L G + G + +++ G + V G S+ Y
Sbjct: 24 KVQFQSGGANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDW 83
Query: 539 FRERLLGRWGIVDVNDC---CSCATFLVGSGKADEKRLCITGGSAGGY-TTLAALAFRDT 594
++ + +L + + G S A+
Sbjct: 84 YQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQ 143
Query: 595 FKAGASLYGVADLS------MLRAETHKFESRYIDNLVGSEKD--YYEKSPINFVDKF-- 644
F ++ G+ D S ++ ++ G ++D + P+ V K
Sbjct: 144 FVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIA 203
Query: 645 -SCPIILFQGLEDKVVPP--------------DQARKIYKALKENGLPVALVEYEGE 686
+ + ++ G K A G + ++
Sbjct: 204 NNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDS 260
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 63.6 bits (153), Expect = 3e-11
Identities = 28/152 (18%), Positives = 45/152 (29%), Gaps = 13/152 (8%)
Query: 469 GQKAYAYYYPPSNP-----IYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWA 523
G K Y P N + +P + R +L + G+
Sbjct: 38 GVKLYTVIVIPKNARNAPILLTRTPYNAKG--RANRVPNALTMREVLPQGDDVFVEGGYI 95
Query: 524 FVDVNYGGSTGYGREFR-----ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 578
V + G G ++ L + D +LV + R+ +TG
Sbjct: 96 RVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGS 155
Query: 579 SAGGYTTLAALAFR-DTFKAGASLYGVADLSM 609
S G+T + AL K A + D M
Sbjct: 156 SYEGFTVVMALLDPHPALKVAAPESPMVDGWM 187
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 62.8 bits (151), Expect = 3e-11
Identities = 35/228 (15%), Positives = 63/228 (27%), Gaps = 32/228 (14%)
Query: 483 IYQASPEEKPPLLVKSHGG--PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540
+YQ + P+LV HGG L + V V+Y + +
Sbjct: 72 VYQ--QKPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHKFP-- 127
Query: 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 600
+ D D + D ++ + G SAGG A
Sbjct: 128 ------AAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFI 181
Query: 601 LYGVADLSMLRAETHKFESRYIDNLV------------------GSEKDYYEKSPINFVD 642
+ + ++ + +K S I
Sbjct: 182 KHQILIYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADL 241
Query: 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690
+ P ++ D + D+ + L+ G+ ++V Y G HGF
Sbjct: 242 ENLPPALIITAEYDPLR--DEGEVFGQMLRRAGVEASIVRYRGVLHGF 287
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 6e-11
Identities = 29/239 (12%), Positives = 64/239 (26%), Gaps = 20/239 (8%)
Query: 484 YQASPEEKPPLLVKSHGG-------PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536
+Q + ++ HGG ++ + N T + Y S
Sbjct: 23 FQEISQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEIT 82
Query: 537 REFRERLLGRWGIVDVNDCCSCATFL----VGSGKADEKRLCITGGSAGGYTTLAAL-AF 591
V + + VG+ + + +
Sbjct: 83 NPRNLYDAVSNITRLVKEKGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGL 142
Query: 592 RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPI------NFVDKFS 645
K L G+ L L E +++ + Y E+ + +FS
Sbjct: 143 LQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFS 202
Query: 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG--FRKAENIKFTLEQ 702
+ L D+++ Q + L++ L L + H ++ + K+ +
Sbjct: 203 IDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVYKNGKVAKYIFDN 261
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Score = 56.9 bits (136), Expect = 2e-09
Identities = 33/241 (13%), Positives = 62/241 (25%), Gaps = 47/241 (19%)
Query: 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSI 514
++ + G YYP S + + +V S G + +
Sbjct: 21 YATSQTSVSSLVASGFGGGTIYYPTS------TADGTFGAVVISPGFTAY--QSSIAWLG 72
Query: 515 QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 574
S+G+ ++ + ++ D + + + + D RL
Sbjct: 73 PRLASQGFVVFTIDTNTTLDQPDSRG------RQLLSALDYLTQRSSV--RTRVDATRLG 124
Query: 575 ITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYE 634
+ G S GG +L A R + KA
Sbjct: 125 VMGHSMGGGGSLEAAKSRTSLKAAI-------------------------------PLTG 153
Query: 635 KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694
+ + P ++ D V P K + L A +E G H
Sbjct: 154 WNTDKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTS 213
Query: 695 N 695
+
Sbjct: 214 D 214
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Score = 56.2 bits (134), Expect = 2e-09
Identities = 30/238 (12%), Positives = 57/238 (23%), Gaps = 31/238 (13%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-----RGILNLS 513
I + + A Y P S ++K +L HG SE G N+
Sbjct: 23 VNISYFSTATNSTRPARVYLPPG----YSKDKKYSVLYLLHGIGGSENDWFEGGGRANVI 78
Query: 514 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 573
+ G + +T + +N E R
Sbjct: 79 ADNLIAEGKIKPLIIVTPNTNAAGPGIADGYENFTKDLLNSLIPYIESNYSVYTDREHRA 138
Query: 574 CITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYY 633
GG + L D F + S + +
Sbjct: 139 IAGLSMGGGQSFNIGLTNLDKFAYIGPI-----------------SAAPNTY---PNERL 178
Query: 634 EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691
+ + + G D ++ +++++ N + +G H F
Sbjct: 179 FPDGGKAAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQGGGHDFN 234
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Score = 54.8 bits (130), Expect = 1e-08
Identities = 29/274 (10%), Positives = 54/274 (19%), Gaps = 48/274 (17%)
Query: 453 SYFSLPELIEFPTEVPGQ-----KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR 507
+ L P + Y Y P K + HG +
Sbjct: 22 RDVTSETLSLSPKYDAHGTVTVDQMYVRYQIPQRA--------KRYPITLIHGCCLTGMT 73
Query: 508 GILNLS-----IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVND-------C 555
+Y+ +G++ ++ G + + G +
Sbjct: 74 WETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLGKAPASSLPDLFAAG 133
Query: 556 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETH 615
A + G T L D + + A
Sbjct: 134 HEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL 193
Query: 616 KFESRYIDNLVG------------------SEKDYYEKSPINFVDKFSCPIILFQGLEDK 657
+ G S + P + S P+++ G +
Sbjct: 194 DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIE 253
Query: 658 VVPPD-----QARKIYKALKENGLPVALVEYEGE 686
P AL G L+
Sbjct: 254 EFPRWAPRLKACHAFIDALNAAGGKGQLMSLPAL 287
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Score = 53.5 bits (127), Expect = 2e-08
Identities = 30/208 (14%), Positives = 61/208 (29%), Gaps = 22/208 (10%)
Query: 483 IYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541
++ V HGG + + + S+GWA +Y
Sbjct: 54 LFLPEGTPVGLF-VFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRISEI- 111
Query: 542 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-RDTFKAGAS 600
+ + + K + + + G SAGG+ L GA
Sbjct: 112 -------------TQQISQAVTAAAKEIDGPIVLAGHSAGGHLVARMLDPEVLPEAVGAR 158
Query: 601 LYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVP 660
+ V +S L + + +SP+ +++ + ++ G ++
Sbjct: 159 IRNVVPISPLSDLRPLLRTSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAF 218
Query: 661 PDQARKIYKALKENGLPVALVEYEGEQH 688
DQA + +A V + H
Sbjct: 219 LDQAIWLVEAWD-----ADHVIAFEKHH 241
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 54.4 bits (129), Expect = 3e-08
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 22/156 (14%)
Query: 469 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG---------GPTSEARGILNLSIQYWTS 519
G K + P + P+++ + + +L+ +
Sbjct: 34 GVKLHTVIVLPKGA-------KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVE 86
Query: 520 RGWAFVDVNYGGSTGYGREFR-----ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 574
G+ V + G G ++ L + D +LV + ++
Sbjct: 87 GGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVG 146
Query: 575 ITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSM 609
+ G S G+T + AL K + D M
Sbjct: 147 MIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWM 182
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Score = 52.0 bits (123), Expect = 6e-08
Identities = 33/234 (14%), Positives = 63/234 (26%), Gaps = 35/234 (14%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG--GPTSEARGILNLSIQY 516
E I + G A P+ + P++V + G + R + +
Sbjct: 4 EGISIQSY-DGHTFGALVGSPA--------KAPAPVIVIAQEIFGVNAFMRET----VSW 50
Query: 517 WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCIT 576
+G+A V + G + + VG +A +
Sbjct: 51 LVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQ 110
Query: 577 GGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKS 636
S G G+ + A ++ + +
Sbjct: 111 PYSNGKV-------------------GLVGYCLGGALAFLVAAKGYVDRAVGYYGVGLEK 151
Query: 637 PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690
+N V + P + G +D VP + I + N + + YE H F
Sbjct: 152 QLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVHWYEEAGHSF 204
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Score = 52.2 bits (123), Expect = 8e-08
Identities = 41/252 (16%), Positives = 68/252 (26%), Gaps = 30/252 (11%)
Query: 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQY 516
+ E+ EF ++PG+ Y P P LV HG G + ++
Sbjct: 43 VAEVREFDMDLPGRTLKVRMYRPEGVEPPY------PALVYYHG------GGWVVGDLET 90
Query: 517 WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCIT 576
+ D D D R+ +
Sbjct: 91 HDPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAYDALQWIAERAADFHLDPARIAVG 150
Query: 577 GGSAGG-----YTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD 631
G SAGG + LA +Y E+ L G
Sbjct: 151 GDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAHPPASIEENAEGYLLTGGMSL 210
Query: 632 YYEKSPINFVDKFSCPIILFQGLEDKVVPP-------------DQARKIYKALKENGLPV 678
++ +N +++ + P D P D + +AL + G+ V
Sbjct: 211 WFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLRDVGKLYAEALNKAGVKV 270
Query: 679 ALVEYEGEQHGF 690
+ +E HGF
Sbjct: 271 EIENFEDLIHGF 282
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 50.2 bits (118), Expect = 5e-07
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 8/127 (6%)
Query: 483 IYQASPEEKPPLLVKSH--GGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540
+Y+ + P+L+ + A + + + G+A V + G EF
Sbjct: 22 LYRPDADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEFV 81
Query: 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 600
+ D + D G AA++ KA A
Sbjct: 82 PHVDDEADAEDTLSWILEQAW------CDGNVGMFGVSYLGVTQWQAAVSGVGGLKAIAP 135
Query: 601 LYGVADL 607
ADL
Sbjct: 136 SMASADL 142
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Score = 47.8 bits (112), Expect = 1e-06
Identities = 24/214 (11%), Positives = 52/214 (24%), Gaps = 30/214 (14%)
Query: 483 IYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540
++Q + P+L+ HG +E + + + + G + R
Sbjct: 5 VFQKGKDTSKPVLLLLHGTGGNELDLLPLAEIVDSEASVLSVRGNVLENGMPRFFRRLAE 64
Query: 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 600
I + K D + G S G + L + GA
Sbjct: 65 GIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAV 124
Query: 601 LYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVP 660
L+ + + + + + G D +
Sbjct: 125 LHH---------------------------PMVPRRGMQLANLAGKSVFIAAGTNDPICS 157
Query: 661 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694
++ ++ L+ V + H E
Sbjct: 158 SAESEELKVLLENANANVTMHWENRG-HQLTMGE 190
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 31/227 (13%)
Query: 491 KPPLLVKSHG-GPTSEARGILNLS--IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547
P + + + + +G + V GG+ + + +W
Sbjct: 26 GPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPA-GGAYSMYTNWEQDGSKQW 84
Query: 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA-ALAFRDTFKAGASLYGVAD 606
+ L + G + GGY +A A D F S+ G
Sbjct: 85 DTFLSAELPDW---LAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLY 141
Query: 607 LS------MLRAETHKFESRYIDNLVGSEKD--YYEKSPINFVDKFSC---PIILFQGLE 655
S + A +F + + G+ + + P + + ++
Sbjct: 142 PSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTN 201
Query: 656 DKVVPP-----------DQARKIYKALKE-NGLPVALVEYEGEQHGF 690
P +R Y + G +G+
Sbjct: 202 PGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHNGHFDFPASGDNGW 248
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 32/254 (12%), Positives = 57/254 (22%), Gaps = 35/254 (13%)
Query: 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 518
+ P + + P N P+L+ HG G + +
Sbjct: 51 RELSAPGLDGDPEVKIRFVTPDNT------AGPVPVLLWIHG------GGFAIGTAESSD 98
Query: 519 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 578
+ D D R+ + G
Sbjct: 99 PFCVEVARELGFAVANVEYRLAPETTFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQ 158
Query: 579 SAGGYTTLA-ALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD------ 631
SAGG L RD + + + + ++D + +
Sbjct: 159 SAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWK 218
Query: 632 ---------------YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGL 676
+P D P +E D+ + L + G+
Sbjct: 219 YYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDP-LRDEGIEYALRLLQAGV 277
Query: 677 PVALVEYEGEQHGF 690
V L + G HG
Sbjct: 278 SVELHSFPGTFHGS 291
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 32/255 (12%), Positives = 62/255 (24%), Gaps = 37/255 (14%)
Query: 468 PGQKAYAYYYPPSN----PIYQASPEEKPPLLVKSHG-GPTSEARGILNLS--IQYWTSR 520
PG Y PS I P + G + G + + +
Sbjct: 2 PGLP-VEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQS 60
Query: 521 GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC---CSCATFLVGSGKADEKRLCITG 577
G + + G S+ Y ++ + +L + G
Sbjct: 61 GLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVG 120
Query: 578 GSAGGYTTLA-ALAFRDTFKAGASLYGVADLSMLRAETHKFESRYI------DNLVGSEK 630
S G + L A + F ASL G + S T + +++ G
Sbjct: 121 LSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSS 180
Query: 631 D--YYEKSPINFVDKFSC---PIILFQGLEDKVVPP--------------DQARKIYKAL 671
D + P+ + + I ++ G +
Sbjct: 181 DPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTY 240
Query: 672 KENGLPVALVEYEGE 686
+G + +
Sbjct: 241 AADGGRNGVFNFPPN 255
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Score = 41.9 bits (97), Expect = 9e-05
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694
P + G D VV R ++ LK G+ V EY H E
Sbjct: 159 PALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYPMG-HEVLPQE 205
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} Length = 358 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 636 SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690
+ P ++ D D+ + L G+ VA G HG
Sbjct: 276 FASEDELRGLPPFVVAVNELD--PLRDEGIAFARRLARAGVDVAARVNIGLVHGA 328
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 30/225 (13%), Positives = 53/225 (23%), Gaps = 40/225 (17%)
Query: 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 531
+Y + PL V HG + + +
Sbjct: 5 SYFHKSRAGVA--------GAPLFVLLHGTGGD-ENQFFDFGARLLPQATILSPVGDVSE 55
Query: 532 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA--DEKRLCITGGSAGGYTTLAAL 589
R G + +VD+ + + + + G S G L
Sbjct: 56 HGAARFFRRTGE-GVYDMVDLERATGKMADFIKANREHYQAGPVIGLGFSNGANILANVL 114
Query: 590 AFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPII 649
+ A L P K + ++
Sbjct: 115 IEQPELFDAAVLMH---------------------------PLIPFEPKISPAKPTRRVL 147
Query: 650 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694
+ G D + P + + ++LK G V V + G H R E
Sbjct: 148 ITAGERDPICPVQLTKALEESLKAQGGTVETVWHPGG-HEIRSGE 191
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/213 (10%), Positives = 41/213 (19%), Gaps = 31/213 (14%)
Query: 484 YQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541
+ +E L HG E + T G + R
Sbjct: 15 LLGAGKESRECLFLLHGSGVDETTLVPLARRIAPTATLVAARGRIPQEDGFRWFERIDPT 74
Query: 542 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASL 601
R + + + + + G S G + + A+L
Sbjct: 75 RFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAAL 134
Query: 602 YGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPP 661
+ D ++ G D+ P
Sbjct: 135 LR---------------------------PMPVLDHVPATDLAGIRTLIIAGAADETYGP 167
Query: 662 DQARKIYKALKENGLPVALVEYEGEQHGFRKAE 694
+ L +G V H +
Sbjct: 168 -FVPALVTLLSRHGAEVDARIIPSG-HDIGDPD 198
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Score = 39.7 bits (91), Expect = 4e-04
Identities = 21/200 (10%), Positives = 48/200 (24%), Gaps = 36/200 (18%)
Query: 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 550
K ++ HG S + + G +N E L +
Sbjct: 2 KQVYII--HGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQPRLEDWLDTLSLYQ-- 57
Query: 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML 610
+ + S G L L A +
Sbjct: 58 ----------------HTLHENTYLVAHSLGCPAILRFLEHLQLRAALGGII-------- 93
Query: 611 RAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 670
++ + L ++ + + + + +D++VP ++ + +
Sbjct: 94 ---LVSGFAKSLPTLQMLDEFTQGSFDHQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQ 150
Query: 671 LKENGLPVALVEYEGEQHGF 690
+ AL E + H
Sbjct: 151 -----IDAALYEVQHGGHFL 165
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} Length = 377 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Score = 40.5 bits (93), Expect = 6e-04
Identities = 13/92 (14%), Positives = 24/92 (26%), Gaps = 3/92 (3%)
Query: 597 AGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLED 656
AG S+ V S + + + P + PI ++ G D
Sbjct: 265 AGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGND 324
Query: 657 KVVPPDQARKIYKALKENGLPVALVEYEGEQH 688
+ P + L + + H
Sbjct: 325 LLADPHDVDLLLSKLPNL---IYHRKIPPYNH 353
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.003
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 646 CPIILFQGLEDKVVPPDQARKIYKALKE--NGLPVALVEYEGEQHGFRKAE 694
I+ G D +VP + LK N V YEG H + E
Sbjct: 164 ISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQE 214
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 729 | |||
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 100.0 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.98 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.94 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.92 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.92 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.92 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.91 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.88 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.88 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.86 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.85 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.85 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.85 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.85 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.84 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.84 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.84 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.83 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.82 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.82 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.82 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.81 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.81 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.81 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.81 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.81 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.79 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.77 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.77 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.77 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.77 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.77 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.76 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.76 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.76 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.75 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.74 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.74 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.74 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.73 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.73 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.73 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.72 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.72 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.72 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.71 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.7 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.7 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.7 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.7 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.7 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.69 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.69 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.68 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.68 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.68 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.67 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.66 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.65 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.65 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.64 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.63 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.62 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.62 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.61 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.59 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.56 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.56 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.55 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.51 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.51 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.51 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.31 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.28 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 99.25 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.25 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.24 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 99.21 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 99.2 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.2 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 99.19 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 99.17 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.13 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.12 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.12 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 99.11 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 99.07 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.05 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.04 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.01 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 99.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.97 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.96 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.93 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.92 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.84 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.82 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.82 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.82 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.8 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.78 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.76 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.74 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.71 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.7 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.68 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.67 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.67 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.65 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.64 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.63 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.62 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.61 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.59 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.55 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.55 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.5 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.5 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.45 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.45 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.45 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.44 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.42 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.41 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.4 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.39 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.37 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.37 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.36 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.36 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.33 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.33 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.33 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.3 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.28 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.28 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.27 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.26 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.24 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.23 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.23 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.22 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.21 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 98.19 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.19 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 98.18 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.17 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.12 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.1 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.07 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.9 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.78 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.68 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 97.68 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.66 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.61 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.52 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.45 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.43 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.38 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.3 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 97.29 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 97.29 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.22 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.21 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.07 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.96 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 96.83 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.73 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.67 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 96.59 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 95.85 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 95.26 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.12 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 94.17 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.8 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.48 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.39 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.02 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.91 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 92.85 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 91.42 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 91.22 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 85.72 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 85.41 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 84.86 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 83.36 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 83.32 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 81.33 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 81.11 |
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=4.8e-34 Score=286.99 Aligned_cols=249 Identities=26% Similarity=0.344 Sum_probs=221.7
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCC
Q 004816 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 534 (729)
Q Consensus 455 ~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g 534 (729)
....+.+++++. ||.+|+++++.|++ ..++.|+||++|||+++.....|...++.|+++||+|+.+|+||.++
T Consensus 9 ~~~~~~v~~~s~-dG~~i~~~l~~p~~------~~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~ 81 (260)
T d2hu7a2 9 IAGSRLVWVESF-DGSRVPTYVLESGR------APTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTG 81 (260)
T ss_dssp EEEEEEEEEECT-TSCEEEEEEEEETT------SCSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSS
T ss_pred cCceEEEEEECC-CCCEEEEEEEeCCC------CCCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeeccc
Confidence 445678899998 99999999999977 24667999999999888777888888999999999999999999999
Q ss_pred CchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh
Q 004816 535 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE 613 (729)
Q Consensus 535 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~ 613 (729)
+|.++.......++..+++|+.++++|+.++. +..+++|+|+|+||++++.++. +++.++++++.+|+.++..+...
T Consensus 82 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~ 159 (260)
T d2hu7a2 82 YGEEWRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYEL 159 (260)
T ss_dssp SCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHT
T ss_pred cccccccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhcc
Confidence 99999998888888888999999999999974 5789999999999999999888 99999999999999998877665
Q ss_pred cchhhhhhhhhh-cCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC
Q 004816 614 THKFESRYIDNL-VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692 (729)
Q Consensus 614 ~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 692 (729)
.......+.... ..+.+.+...+|+.+++++++|+|++||++|.+||++++.+++++|+++|+++++++||+++|++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~~ 239 (260)
T d2hu7a2 160 SDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINT 239 (260)
T ss_dssp CCHHHHHHHHHHHCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSCSHHHHHHHHHHHHTTCCEEEEEETTCCSSCCB
T ss_pred cccccccccccccccccccccccchhhcccccCCCceeeecccCceecHHHHHHHHHHHHHCCCCeEEEEECcCCCCCCC
Confidence 544444444333 3467888999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccHHHHHHHHHHHHHHHhC
Q 004816 693 AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 693 ~~~~~~~~~~~~~fl~~~l~ 712 (729)
.++..++++.+++||.+|++
T Consensus 240 ~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 240 MEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHhc
Confidence 88999999999999999986
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-32 Score=276.67 Aligned_cols=238 Identities=18% Similarity=0.246 Sum_probs=195.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc-ccc--hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhc
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GIL--NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 544 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~-~~~--~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~ 544 (729)
||..|+++++.|++.+ +++++|+||++||||+.... ..+ ....+.|+++||+|+++||||++++|..+.....
T Consensus 11 dg~~l~~~l~~P~~~~----~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~ 86 (258)
T d1xfda2 11 DDYNLPMQILKPATFT----DTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVR 86 (258)
T ss_dssp TTEEECCBEEBCSSCC----SSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTT
T ss_pred CCeEEEEEEEECCCcC----CCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhh
Confidence 8999999999998843 46788999999998754332 223 3456789999999999999999999999998888
Q ss_pred cCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEEEEeccccChhHHhhhcchhhh
Q 004816 545 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F----RDTFKAGASLYGVADLSMLRAETHKFES 619 (729)
Q Consensus 545 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~----~~~~~a~v~~~~~~d~~~~~~~~~~~~~ 619 (729)
.+++..+++|+.++++++.+++.+|++||+++|+|+||++++.++. . +..+++.+...++......... ...
T Consensus 87 ~~~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 163 (258)
T d1xfda2 87 RRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASA---FSE 163 (258)
T ss_dssp TCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBHH---HHH
T ss_pred ccchhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeeccccc---ccc
Confidence 8888889999999999999999999999999999999999998876 3 3467888888877654322111 111
Q ss_pred hhhhhhcCChhhhhhcCcccccCCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHH
Q 004816 620 RYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKF 698 (729)
Q Consensus 620 ~~~~~~~~~~~~~~~~sp~~~~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~ 698 (729)
.+......+.+.+...++..++.++ ++|+|++||+.|.+||++++.+++++|++.|++++++++|+++|++...+....
T Consensus 164 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~ 243 (258)
T d1xfda2 164 RYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQH 243 (258)
T ss_dssp HHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHH
T ss_pred ccccccccchHHhhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCcCHHH
Confidence 1111111244567777888877776 689999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHhC
Q 004816 699 TLEQQMVFFARVVG 712 (729)
Q Consensus 699 ~~~~~~~fl~~~l~ 712 (729)
.++.+++||+++|+
T Consensus 244 ~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 244 LYRSIINFFVECFR 257 (258)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999886
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.98 E-value=1.9e-31 Score=267.57 Aligned_cols=249 Identities=21% Similarity=0.249 Sum_probs=208.5
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc---ccchhhhHHHhhCCcEEEEecCCCCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGSTG 534 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~---~~~~~~~~~la~~G~~v~~~d~rGs~g 534 (729)
.+++.+... +|.++.++++.|++.+ +++++|+||++||||+.... ..+......++++||+|+.+||||+++
T Consensus 3 ~~~~~~~~~-~~~~~~~~l~lP~~~~----~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~ 77 (258)
T d2bgra2 3 SKKLDFIIL-NETKFWYQMILPPHFD----KSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGY 77 (258)
T ss_dssp EEEEEEEEE-TTEEEEEEEEECTTCC----TTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSS
T ss_pred ceeEEEEEe-CCcEEEEEEEECCCcC----CCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCC
Confidence 477888887 9999999999999843 47889999999998655333 233445667789999999999999999
Q ss_pred CchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh
Q 004816 535 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE 613 (729)
Q Consensus 535 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~ 613 (729)
++..+......+++..+.+|+.++++++.++..+|+++|+++|+|+||.+++.++. +|+.+.+++...+......+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T d2bgra2 78 QGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSV 157 (258)
T ss_dssp SCHHHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHH
T ss_pred cchHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeeccccccccccc
Confidence 99999999999999889999999999999999999999999999999999999888 89999999988887665433221
Q ss_pred cchhhhhhhhhhcCChhhhhhcCcccccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC
Q 004816 614 THKFESRYIDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692 (729)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 692 (729)
.... .........+.+.+...+|+..+++++ +|+|++||++|.+||+.++++++++|+++|+++++++||+++|+|..
T Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~~~~~~~~g~~H~~~~ 236 (258)
T d2bgra2 158 YTER-YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIAS 236 (258)
T ss_dssp HHHH-HHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEETTCCTTCCS
T ss_pred ccch-hcccccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Confidence 1100 000111122456777889999888876 79999999999999999999999999999999999999999999988
Q ss_pred cccHHHHHHHHHHHHHHHhC
Q 004816 693 AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 693 ~~~~~~~~~~~~~fl~~~l~ 712 (729)
.++...+++.+.+||+++|.
T Consensus 237 ~~~~~~~~~~i~~fl~~~l~ 256 (258)
T d2bgra2 237 STAHQHIYTHMSHFIKQCFS 256 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHhc
Confidence 88888999999999999987
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.94 E-value=3e-25 Score=224.45 Aligned_cols=252 Identities=18% Similarity=0.168 Sum_probs=192.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh-hhHHHhhCCcEEEEecCCCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVNYGGSTGY 535 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~la~~G~~v~~~d~rGs~g~ 535 (729)
+++++++++. ||.+|+++++.|++.+ ++++.|+||++||||+......+.. ....++..|+.++..++++...+
T Consensus 6 ~~e~v~~~s~-DG~~i~~~l~~P~~~~----~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
T d1qfma2 6 QTVQIFYPSK-DGTKIPMFIVHKKGIK----LDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEY 80 (280)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEETTCC----CSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTT
T ss_pred EEEEEEEECC-CCCEEEEEEEEcCCCC----CCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeecccccccccc
Confidence 4588999998 9999999999998843 4678999999999988777666543 44556677888999998887777
Q ss_pred chhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc
Q 004816 536 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 614 (729)
Q Consensus 536 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~ 614 (729)
+..........+.....++...++.+...+...+..+++++|+|.||+++..++. .++.+++++...++.++.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (280)
T d1qfma2 81 GETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYT 160 (280)
T ss_dssp HHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGST
T ss_pred chhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhcccc
Confidence 7776666655566666777888888888888888899999999999999988887 888999999999998876554332
Q ss_pred chhhhhhhhhhcC---Chhhhhhc------CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHh-------CCCCE
Q 004816 615 HKFESRYIDNLVG---SEKDYYEK------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE-------NGLPV 678 (729)
Q Consensus 615 ~~~~~~~~~~~~~---~~~~~~~~------sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~-------~g~~~ 678 (729)
............. ....+... +|+..+.....|+|++||++|.+||+.++++++++|++ +|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~~~~~ 240 (280)
T d1qfma2 161 IGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPL 240 (280)
T ss_dssp TGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCE
T ss_pred ccccceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcCCCcE
Confidence 2211111111100 11222333 34444444456899999999999999999999999964 47899
Q ss_pred EEEEECCCCcccCCcc-cHHHHHHHHHHHHHHHhCC
Q 004816 679 ALVEYEGEQHGFRKAE-NIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 679 ~~~~~~~~gH~~~~~~-~~~~~~~~~~~fl~~~l~~ 713 (729)
++++||++||+|..+. +..+.+.++++||+++|+.
T Consensus 241 ~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~ 276 (280)
T d1qfma2 241 LIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 276 (280)
T ss_dssp EEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999997654 3457778899999999983
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.92 E-value=2.3e-24 Score=225.65 Aligned_cols=234 Identities=15% Similarity=0.088 Sum_probs=171.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.++++. +|..++++++.|.+ .++.|+||++||..+. ...+....+.|+++||+|+++|+||.|...
T Consensus 105 ~~e~v~ip~--dg~~l~g~l~~P~~-------~~~~P~Vi~~hG~~~~--~e~~~~~~~~l~~~G~~vl~~D~~G~G~s~ 173 (360)
T d2jbwa1 105 PAERHELVV--DGIPMPVYVRIPEG-------PGPHPAVIMLGGLEST--KEESFQMENLVLDRGMATATFDGPGQGEMF 173 (360)
T ss_dssp CEEEEEEEE--TTEEEEEEEECCSS-------SCCEEEEEEECCSSCC--TTTTHHHHHHHHHTTCEEEEECCTTSGGGT
T ss_pred CeEEeecCc--CCcccceEEEecCC-------CCCceEEEEeCCCCcc--HHHHHHHHHHHHhcCCEEEEEccccccccC
Confidence 457888887 79999999999976 4578999999997433 334556788999999999999999865432
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcch
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHK 616 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~ 616 (729)
... .. ......++..+++++.....+|.+||+|+|+|+||+++++++...++++++|+..|+.++.........
T Consensus 174 ~~~-----~~-~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~pri~a~V~~~~~~~~~~~~~~~~~ 247 (360)
T d2jbwa1 174 EYK-----RI-AGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDYWDLETPL 247 (360)
T ss_dssp TTC-----CS-CSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEESCCSCSTTGGGSCHH
T ss_pred ccc-----cc-cccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCCCcceEEEEcccccHHHHhhhhhh
Confidence 211 11 111234667889999999889999999999999999999999844479999999998887544332221
Q ss_pred hhhhhhhhhcC-C-----hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 617 FESRYIDNLVG-S-----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 617 ~~~~~~~~~~~-~-----~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
....+...... . .......+....+.+|++|+|++||++|. +|++++.++++.+... +++++++++++|..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp~~~~~~l~~~~~~~--~~~l~~~~~g~H~~ 324 (360)
T d2jbwa1 248 TKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE--HLNLVVEKDGDHCC 324 (360)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG--GEEEEEETTCCGGG
T ss_pred hhHHHHHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cCHHHHHHHHHhcCCC--CeEEEEECCCCcCC
Confidence 11111111100 1 12223445556688999999999999997 6999999999988643 56889999999975
Q ss_pred CCcccHHHHHHHHHHHHHHHhC
Q 004816 691 RKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 691 ~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.. +.......+.+||.++|.
T Consensus 325 ~~--~~~~~~~~i~dWl~~~L~ 344 (360)
T d2jbwa1 325 HN--LGIRPRLEMADWLYDVLV 344 (360)
T ss_dssp GG--GTTHHHHHHHHHHHHHHT
T ss_pred Cc--ChHHHHHHHHHHHHHHhc
Confidence 42 334667789999999985
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.6e-24 Score=224.21 Aligned_cols=239 Identities=18% Similarity=0.197 Sum_probs=173.8
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
+.+.++|++. ||.+|+++++.|++ ..++.|+||++||++.... +......|+++||.|+++|+||.|.++
T Consensus 54 ~~~~v~~~s~-dG~~l~~~l~~P~~------~~~~~P~Vv~~hG~~~~~~---~~~~~~~~a~~G~~v~~~D~rG~G~s~ 123 (322)
T d1vlqa_ 54 EAYDVTFSGY-RGQRIKGWLLVPKL------EEEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGW 123 (322)
T ss_dssp EEEEEEEECG-GGCEEEEEEEEECC------SCSSEEEEEECCCTTCCCC---CGGGGCHHHHTTCEEEEECCTTCCCSS
T ss_pred EEEEEEEECC-CCcEEEEEEEeccC------CCCCccEEEEecCCCCCcC---cHHHHHHHHhCCCEEEEeeccccCCCC
Confidence 4577889988 99999999999976 2467899999999855432 233456789999999999999987765
Q ss_pred hhHHHhhccC---------------------CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcc
Q 004816 537 REFRERLLGR---------------------WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTF 595 (729)
Q Consensus 537 ~~~~~~~~~~---------------------~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~ 595 (729)
.......... +....+.|+.++++++..+..+|++|++++|+|+||++++.++...++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~~~ 203 (322)
T d1vlqa_ 124 LKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKA 203 (322)
T ss_dssp SCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCSSC
T ss_pred CCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCCCc
Confidence 4322111000 0011367999999999999999999999999999999999888866689
Q ss_pred eEEEEeccccCh-hHHhhhcchhh----hhhhhhhcCC----hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHH
Q 004816 596 KAGASLYGVADL-SMLRAETHKFE----SRYIDNLVGS----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARK 666 (729)
Q Consensus 596 ~a~v~~~~~~d~-~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~ 666 (729)
+++++.++.... ........... ..+....... .+.+...+|+.++.++++|+|++||++|.+||++++.+
T Consensus 204 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~~G~~D~~vp~~~~~~ 283 (322)
T d1vlqa_ 204 KALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFA 283 (322)
T ss_dssp CEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHH
T ss_pred cEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcCCCCEEEEEeCCCCCcCHHHHHH
Confidence 999998876543 22222111110 1111111111 13445578999999999999999999999999999888
Q ss_pred HHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 667 IYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 667 ~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+++++ +.++++++||+++|.+... ...+..++||+++|.
T Consensus 284 ~~~~~---~~~~~l~~~p~~~H~~~~~----~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 284 AYNYY---AGPKEIRIYPYNNHEGGGS----FQAVEQVKFLKKLFE 322 (322)
T ss_dssp HHHHC---CSSEEEEEETTCCTTTTHH----HHHHHHHHHHHHHHC
T ss_pred HHHHC---CCCeEEEEECCCCCCCccc----cCHHHHHHHHHHHhC
Confidence 77665 5588999999999975432 223456799999874
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=3.2e-24 Score=221.01 Aligned_cols=239 Identities=22% Similarity=0.242 Sum_probs=175.7
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
+.+.++|++. ||.+|.++++.|++ .++.|+||++||+++.. ..+...+..|+++||.|+++|+||.|.++
T Consensus 55 ~~~~v~~~~~-dg~~i~~~l~~P~~-------~~~~P~vv~~HG~~~~~--~~~~~~~~~la~~Gy~vi~~D~rG~G~s~ 124 (318)
T d1l7aa_ 55 KVYRLTYKSF-GNARITGWYAVPDK-------EGPHPAIVKYHGYNASY--DGEIHEMVNWALHGYATFGMLVRGQQRSE 124 (318)
T ss_dssp EEEEEEEEEG-GGEEEEEEEEEESS-------CSCEEEEEEECCTTCCS--GGGHHHHHHHHHTTCEEEEECCTTTSSSC
T ss_pred EEEEEEEECC-CCcEEEEEEEecCC-------CCCceEEEEecCCCCCc--cchHHHHHHHHHCCCEEEEEeeCCCCCCC
Confidence 4578899988 99999999999976 45789999999985443 44566788999999999999999988765
Q ss_pred hhHHHhhccCCC--------------cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEec
Q 004816 537 REFRERLLGRWG--------------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY 602 (729)
Q Consensus 537 ~~~~~~~~~~~~--------------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~ 602 (729)
..+.......++ ...+.|...+++++..++.+++.+++++|+|+||.+++.++...++++++++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~~~~~~~~~ 204 (318)
T d1l7aa_ 125 DTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADY 204 (318)
T ss_dssp CCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSCCSEEEEES
T ss_pred CCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcccceEEEec
Confidence 443222111111 112578889999999999999999999999999999999988555677777777
Q ss_pred ccc-ChhHHhhhcchh---hhhhhhhhcCC-------hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHH
Q 004816 603 GVA-DLSMLRAETHKF---ESRYIDNLVGS-------EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL 671 (729)
Q Consensus 603 ~~~-d~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l 671 (729)
|.. ++.......... ........... .......++...+++|++|+|++||++|.+||++++.++++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l 284 (318)
T d1l7aa_ 205 PYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHL 284 (318)
T ss_dssp CCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHC
T ss_pred cccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccCCCCEEEEEECCCCCcCHHHHHHHHHHc
Confidence 654 333322111110 00000111111 1122345667778999999999999999999999999998876
Q ss_pred HhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCC
Q 004816 672 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 672 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 713 (729)
. .++++++||++||.+. .+..+++++||+++|++
T Consensus 285 ~---~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~LkG 318 (318)
T d1l7aa_ 285 E---TKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILKG 318 (318)
T ss_dssp C---SSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHCC
T ss_pred C---CCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhCCC
Confidence 3 4789999999999754 36778899999999974
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-22 Score=219.79 Aligned_cols=323 Identities=11% Similarity=0.042 Sum_probs=207.4
Q ss_pred CCcCCHHHHhcc---CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEE
Q 004816 76 KSPLTADVVSGA---SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI 152 (729)
Q Consensus 76 ~~~lt~e~i~~~---~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (729)
+.+||+|+++.. .+. -.+.|.+++.+++.+ ++|. |+.++..+ ++.+.++... .+..+....+.+
T Consensus 2 ~~~~tle~~~~~~~~~~~-~~~~W~~~~~~~~~~----~~g~--i~~~~~~~-~~~~~l~~~~-----~~~~~~~~~~~~ 68 (465)
T d1xfda1 2 KKKVTVEDLFSEDFKIHD-PEAKWISDTEFIYRE----QKGT--VRLWNVET-NTSTVLIEGK-----KIESLRAIRYEI 68 (465)
T ss_dssp CCCCCHHHHTCTTTCCCC-CCCCBSSSSCBCCCC----SSSC--EEEBCGGG-CCCEEEECTT-----TTTTTTCSEEEE
T ss_pred CCceeHHHHhCCccccCC-CCCEEeCCCcEEEEe----CCCc--EEEEECCC-CCEEEEEcCc-----cccccccceeEE
Confidence 467999999976 222 367899733333322 2343 56666552 3555555432 122234444545
Q ss_pred E--CCEEEEEECC--------CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceE
Q 004816 153 F--GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 153 ~--~~~i~~~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~ 222 (729)
+ ++.|+|..+. .+.+|++|+.+ +..++|+..... ......+.|||||++|+|+++ .+
T Consensus 69 SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~--~~~~~l~~~~~~-~~~l~~~~wSPDG~~iafv~~----------~n 135 (465)
T d1xfda1 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPEVS-NAKLQYAGWGPKGQQLIFIFE----------NN 135 (465)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCCEECCCTTCC-SCCCSBCCBCSSTTCEEEEET----------TE
T ss_pred CCCCCeEEEEEcccceeEeeccccEEEEEccC--CceeeccCccCC-ccccceeeeccCCceEEEEec----------ce
Confidence 4 4577776542 35899999998 888888764322 234456899999999999986 46
Q ss_pred EEEEEcCCCceEEeeeCCC-------------------eeeeeeeCCCCCeEEEEEecCCCC------------------
Q 004816 223 IVAIALNGQNIQVLVSGSD-------------------FYAFPRMDPRGERMAWIEWHHPNM------------------ 265 (729)
Q Consensus 223 l~~~dl~~g~~~~lt~~~~-------------------~~~~~~~SPDG~~la~~~~~~~~~------------------ 265 (729)
||+++..+++..++|.+.. ...+.+|||||++|||.+.++...
T Consensus 136 l~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~ 215 (465)
T d1xfda1 136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKP 215 (465)
T ss_dssp EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred EEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeee
Confidence 9999999988888875321 124678999999999998665521
Q ss_pred --------CCCCcEEEEEEecCCCCeeeeEEecCCC-CCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 266 --------PWDKAELWVGYISENGDVYKRVCVAGFD-PTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 266 --------~~~~~~l~~~d~~~~g~~~~~~~~~~~~-~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
+....+|+++|++ ++... ....+... .....++..+.|++|++ +++..++.+....|+++|+.+|+.+
T Consensus 216 ~~Yp~~G~~np~~~l~v~d~~-~~~~~-~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~ 293 (465)
T d1xfda1 216 YHYPKAGSENPSISLHVIGLN-GPTHD-LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (465)
T ss_dssp EECCBTTSCCCEEEEEEEESS-SSCCC-EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred eeccccCCCCCceeEEEEecC-CCcEE-EEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence 1112368899987 55432 11221111 00014566789999999 5555666456678999999999988
Q ss_pred EeeccCccccCCcccccC-cceeeeeecCCCCEEEE--EEEECCeEEEEEEE-------CCCCceEeeccCCcceEEe--
Q 004816 336 AIYSLDAEFSRPLWVFGI-NSYEIIQSHGEKNLIAC--SYRQNGRSYLGILD-------DFGHSLSLLDIPFTDIDNI-- 403 (729)
Q Consensus 336 ~l~~~~~~~~~~~w~~~~-~~~~~l~~~~~~~~l~~--~s~~~g~~~ly~~d-------~~~g~~~~lt~~~~~v~~~-- 403 (729)
.+..+. ...|.... ....|++ +++.++| .++++|..|+|++. ..++..++||.+.|.|..+
T Consensus 294 ~~~~e~----~~~wv~~~~~~p~~~~---dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~ 366 (465)
T d1xfda1 294 KKHEDE----SEAWLHRQNEEPVFSK---DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA 366 (465)
T ss_dssp EEEEEE----CSSCCCCCCCCCEECT---TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred EEEEEc----CCceEeccCCceeEcc---CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEE
Confidence 887443 23443221 1234443 6665544 56678888888774 3556678999999998877
Q ss_pred eeeCCEEEEEEeCCCCCce--EEEEEcCCCcc
Q 004816 404 TLGNDCLFVEGASGVEPSS--VAKVTLDDHKL 433 (729)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~--ly~~d~~~~~~ 433 (729)
.+..+..+|+.++...|.+ ||+++++++..
T Consensus 367 ~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~ 398 (465)
T d1xfda1 367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN 398 (465)
T ss_dssp EETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred EcCCCCEEEEEEeCCCCCceEEEEEECCCCCc
Confidence 4445555666666666665 99999988754
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.88 E-value=5.6e-22 Score=189.72 Aligned_cols=206 Identities=17% Similarity=0.122 Sum_probs=153.3
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCC---CCccccchhhhHHHhhCCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT---SEARGILNLSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~---~~~~~~~~~~~~~la~~G~~v~~~d~rGs~ 533 (729)
+.+.+++..+ +| ++.+.+..|.... ..+.+++|++|+.|. +.....+...++.|+++||.|+.+||||.|
T Consensus 7 ~~~~l~i~gp-~G-~l~~~~~~p~~~~-----~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G 79 (218)
T d2fuka1 7 ESAALTLDGP-VG-PLDVAVDLPEPDV-----AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVG 79 (218)
T ss_dssp SCEEEEEEET-TE-EEEEEEECCCTTS-----CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTST
T ss_pred CceEEEEeCC-Cc-cEEEEEEcCCCCC-----CCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCc
Confidence 4567889887 66 7988888885521 345567788885432 223333456788999999999999999877
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhh
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAE 613 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~ 613 (729)
.+...+. ......+|+.++++|+.++. +.++++++|+||||.+++.++.+. .++++|+.+|..+...+
T Consensus 80 ~S~g~~~------~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~-~~~~lil~ap~~~~~~~--- 147 (218)
T d2fuka1 80 TSAGSFD------HGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL-EPQVLISIAPPAGRWDF--- 147 (218)
T ss_dssp TCCSCCC------TTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH-CCSEEEEESCCBTTBCC---
T ss_pred cCCCccC------cCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc-ccceEEEeCCcccchhh---
Confidence 6543321 12345899999999999874 457999999999999999888743 36788888886432110
Q ss_pred cchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc
Q 004816 614 THKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA 693 (729)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~ 693 (729)
...++.+|+|++||++|.+||++++.++++++. .+.+++++||++|.|...
T Consensus 148 --------------------------~~~~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~~---~~~~l~~i~ga~H~f~~~ 198 (218)
T d2fuka1 148 --------------------------SDVQPPAQWLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMPDTSHFFHRK 198 (218)
T ss_dssp --------------------------TTCCCCSSEEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEETTCCTTCTTC
T ss_pred --------------------------hccccccceeeEecCCCcCcCHHHHHHHHHHcc---CCceEEEeCCCCCCCCCC
Confidence 012456899999999999999999988876654 356899999999988753
Q ss_pred ccHHHHHHHHHHHHHHHhC
Q 004816 694 ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 694 ~~~~~~~~~~~~fl~~~l~ 712 (729)
..+..+.+.+|++++|.
T Consensus 199 --~~~l~~~~~~~v~~~l~ 215 (218)
T d2fuka1 199 --LIDLRGALQHGVRRWLP 215 (218)
T ss_dssp --HHHHHHHHHHHHGGGCS
T ss_pred --HHHHHHHHHHHHHHhcC
Confidence 34677888999999986
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.88 E-value=6.6e-22 Score=201.64 Aligned_cols=234 Identities=13% Similarity=0.158 Sum_probs=160.9
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
....++.. ||..+++|.+.|++.. .++.|+||++||... ....|..++++|+++||.|+++|+||.+|....
T Consensus 5 ~~h~~~~~-dg~~l~~w~~~p~~~~-----~~~~~~Vvi~HG~~~--~~~~~~~~a~~L~~~G~~Vi~~D~rGh~G~S~g 76 (302)
T d1thta_ 5 IAHVLRVN-NGQELHVWETPPKENV-----PFKNNTILIASGFAR--RMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSG 76 (302)
T ss_dssp EEEEEEET-TTEEEEEEEECCCTTS-----CCCSCEEEEECTTCG--GGGGGHHHHHHHHTTTCCEEEECCCBCC-----
T ss_pred eeeEEEcC-CCCEEEEEEecCcCCC-----CCCCCEEEEeCCCcc--hHHHHHHHHHHHHHCCCEEEEecCCCCCCCCCC
Confidence 34456676 9999999999997632 456789999999743 345678899999999999999999986543321
Q ss_pred HHHhhccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchh
Q 004816 539 FRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKF 617 (729)
Q Consensus 539 ~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~ 617 (729)
. ...+.. ...+|+.++++|+.++ +.++++|+||||||.+++.++.. ..++++|+.+|+.++.........+
T Consensus 77 --~--~~~~~~~~~~~dl~~vi~~l~~~---~~~~i~lvG~SmGG~ial~~A~~-~~v~~li~~~g~~~~~~~~~~~~~~ 148 (302)
T d1thta_ 77 --S--IDEFTMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-LELSFLITAVGVVNLRDTLEKALGF 148 (302)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-SCCSEEEEESCCSCHHHHHHHHHSS
T ss_pred --c--ccCCCHHHHHHHHHHHHHhhhcc---CCceeEEEEEchHHHHHHHHhcc-cccceeEeecccccHHHHHHHHHhh
Confidence 1 111111 2478999999999886 35789999999999999887763 4589999999998876543321110
Q ss_pred hh-hhh-hhhc-----CC----hhhh-----h-----hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCC
Q 004816 618 ES-RYI-DNLV-----GS----EKDY-----Y-----EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGL 676 (729)
Q Consensus 618 ~~-~~~-~~~~-----~~----~~~~-----~-----~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~ 676 (729)
.. ... .... .. ...+ . ..++...++++++|+|++||++|.+||+++++++++.++. .
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~~~~~~~l~~~i~s--~ 226 (302)
T d1thta_ 149 DYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT--G 226 (302)
T ss_dssp CGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCTT--C
T ss_pred ccchhhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhCCC--C
Confidence 00 000 0000 00 0000 0 0124566889999999999999999999999999988764 3
Q ss_pred CEEEEEECCCCcccCCccc-HHHHHHHHHHHHHHH
Q 004816 677 PVALVEYEGEQHGFRKAEN-IKFTLEQQMVFFARV 710 (729)
Q Consensus 677 ~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~fl~~~ 710 (729)
++++++++|++|.+..... ...+++.+..+....
T Consensus 227 ~~kl~~~~g~~H~l~e~~~~~~~~~~~~~~~~~~~ 261 (302)
T d1thta_ 227 HCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIAM 261 (302)
T ss_dssp CEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEecCCCcccccChHHHHHHHHHHHHHHhhh
Confidence 6799999999999764332 334556665555443
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.86 E-value=2.3e-21 Score=193.06 Aligned_cols=192 Identities=18% Similarity=0.194 Sum_probs=148.7
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCccc
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD 551 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~ 551 (729)
..+.+|.|.+. ..++.|+||++||+.+. ...+..+++.|+++||.|+++|++|..+.... .
T Consensus 37 ~~~~ly~P~~~-----~~g~~P~Vv~~HG~~g~--~~~~~~~a~~lA~~Gy~V~~~d~~~~~~~~~~------------~ 97 (260)
T d1jfra_ 37 GGGTIYYPTST-----ADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQPDS------------R 97 (260)
T ss_dssp CCEEEEEESCC-----TTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCHHH------------H
T ss_pred cCEEEEEcCCC-----CCCCccEEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeeCCCcCCchh------------h
Confidence 34567888652 24578999999997443 34567788999999999999999975543221 2
Q ss_pred HHHHHHHHHHHHhC----CCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcC
Q 004816 552 VNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 627 (729)
Q Consensus 552 ~~D~~~~~~~l~~~----~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 627 (729)
..|+.++++++.+. +.+|.+||+++|||+||.+++.++....+++++|+++|....
T Consensus 98 ~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~~~~A~v~~~~~~~~-------------------- 157 (260)
T d1jfra_ 98 GRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTSLKAAIPLTGWNTD-------------------- 157 (260)
T ss_dssp HHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTTCSEEEEESCCCSC--------------------
T ss_pred HHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhccchhheeeeccccc--------------------
Confidence 57788889998885 568999999999999999999999866689999998885321
Q ss_pred ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 628 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 628 ~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
....++++|+|++||++|.++|+++..+.+......+.+.+++++++++|++....+ ....+.++.||
T Consensus 158 -----------~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~i~ga~H~~~~~~~-~~~~~~~~~wl 225 (260)
T d1jfra_ 158 -----------KTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSD-TTIAKYSISWL 225 (260)
T ss_dssp -----------CCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCTTSCEEEEEETTCCTTGGGSCC-HHHHHHHHHHH
T ss_pred -----------ccccccccceeEEecCCCCCCCHHHHHHHHHHhcccCCCEEEEEECCCccCCCCCCh-HHHHHHHHHHH
Confidence 123467899999999999999997755554445556778999999999998765544 45667789999
Q ss_pred HHHhCCC
Q 004816 708 ARVVGHF 714 (729)
Q Consensus 708 ~~~l~~~ 714 (729)
+++|++.
T Consensus 226 ~~~L~~d 232 (260)
T d1jfra_ 226 KRFIDSD 232 (260)
T ss_dssp HHHHSCC
T ss_pred HHHhcCc
Confidence 9999743
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.86 E-value=4.2e-20 Score=201.14 Aligned_cols=328 Identities=10% Similarity=0.054 Sum_probs=204.5
Q ss_pred CCcCCHHHHhccC--CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCc--eEE
Q 004816 76 KSPLTADVVSGAS--KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG--AFR 151 (729)
Q Consensus 76 ~~~lt~e~i~~~~--~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~--~~~ 151 (729)
+.++|+|+++... ...-.++|.+++.+++.+ ++.. +.++.. +++...++... .... +..+.. .|+
T Consensus 2 ~~~~t~~~~~~~~~~~~~~~~~W~~d~~~~~~~-----~~~~--~~~~~~-t~~~~~~~~~~-~~~~--~~~~i~~~~~S 70 (470)
T d2bgra1 2 RKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQ-----ENNI--LVFNAE-YGNSSVFLENS-TFDE--FGHSINDYSIS 70 (470)
T ss_dssp CEECCHHHHHHTCSCCCCCCCEECSSSEEEEES-----SSCE--EEEETT-TCCEEEEECTT-TTTT--SSSCCCEEEEC
T ss_pred CCcEEhHHhhCCceeccccCCEeCCCCEEEEEc-----CCcE--EEEECC-CCCEEEEEchh-hhhh--ccCccceeEEC
Confidence 3578999999872 233588999844444322 3444 444444 23555554322 1111 111223 345
Q ss_pred EECCEEEEEECC--------CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 152 IFGDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 152 ~~~~~i~~~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
+++..|+|..+. .+.+|++|+.+ ++.++++.. +.....+.|||||++|+|+++ .+|
T Consensus 71 pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~--~~~~~l~~~----~~~~~~~~~SPDG~~ia~~~~----------~~l 134 (470)
T d2bgra1 71 PDGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLITEERI----PNNTQWVTWSPVGHKLAYVWN----------NDI 134 (470)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCC----CTTEEEEEECSSTTCEEEEET----------TEE
T ss_pred CCCCEEEEEECCcceeeeccCceEEEEECCC--CcccccccC----CccccccccccCcceeeEeec----------ccc
Confidence 566688887542 24899999998 888888876 344678899999999999875 469
Q ss_pred EEEEcCCCceEEeeeCC-------------------CeeeeeeeCCCCCeEEEEEecCCCCC------------------
Q 004816 224 VAIALNGQNIQVLVSGS-------------------DFYAFPRMDPRGERMAWIEWHHPNMP------------------ 266 (729)
Q Consensus 224 ~~~dl~~g~~~~lt~~~-------------------~~~~~~~~SPDG~~la~~~~~~~~~~------------------ 266 (729)
|++++.+++..+++... +....++|||||++|+|.+.+....+
T Consensus 135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~ 214 (470)
T d2bgra1 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV 214 (470)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeee
Confidence 99999999888876422 12345679999999999986654211
Q ss_pred ----------CCCcEEEEEEecCCCCeeee--EEe-------cCCCCCccccccCceeCCCCc-EEEEEecCCCc--eEE
Q 004816 267 ----------WDKAELWVGYISENGDVYKR--VCV-------AGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF--WNL 324 (729)
Q Consensus 267 ----------~~~~~l~~~d~~~~g~~~~~--~~~-------~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~--~~l 324 (729)
.....++++++. ++..... ... ...+ .++..+.|+++++ +++..++.++. ..+
T Consensus 215 ~~~~~~~g~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~ 289 (470)
T d2bgra1 215 RVPYPKAGAVNPTVKFFVVNTD-SLSSVTNATSIQITAPASMLIGD----HYLCDVTWATQERISLQWLRRIQNYSVMDI 289 (470)
T ss_dssp EEECCBTTSCCCEEEEEEEEGG-GCCSSSCCCEEEECCCHHHHTSC----EEEEEEEEEETTEEEEEEEESSTTEEEEEE
T ss_pred eeccccccccCCcceEEEEECC-CcceeeeccccccCCccccCCCC----ceEEEEEEcCCCceeEEEeeccCCceEEEE
Confidence 112246667766 3332111 000 0111 4456788999999 44444553343 356
Q ss_pred EEEEcCCCeEEEeecc-CccccCCcccccCc--ceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceE
Q 004816 325 HKWIESNNEVLAIYSL-DAEFSRPLWVFGIN--SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID 401 (729)
Q Consensus 325 ~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~--~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~ 401 (729)
+.+|..++....+... ........|..... ...+.. +.++.+++.++++|..|||+++.+++..++|+.+.+.+.
T Consensus 290 ~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~ 367 (470)
T d2bgra1 290 CDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL--DGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVI 367 (470)
T ss_dssp EEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT--TSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEE
T ss_pred EEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeee--cCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEE
Confidence 7778888888776521 11112233332111 112221 144567888999999999999999999999999999888
Q ss_pred Ee-eeeCCEEEEEEeCCC-CCc--eEEEEEcCCCc-ceeee
Q 004816 402 NI-TLGNDCLFVEGASGV-EPS--SVAKVTLDDHK-LKAVD 437 (729)
Q Consensus 402 ~~-~~~~~~~~~~~~~~~-~~~--~ly~~d~~~~~-~~~lt 437 (729)
.+ ..+++.++|.++... .|. +||+++++++. .+.||
T Consensus 368 ~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt 408 (470)
T d2bgra1 368 GIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 408 (470)
T ss_dssp EEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESS
T ss_pred EEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEec
Confidence 77 566677666654432 343 49999998754 44443
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.85 E-value=4.3e-21 Score=187.91 Aligned_cols=209 Identities=18% Similarity=0.247 Sum_probs=151.7
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+.+++++. ||..+.+++..|.+ ++.|+||++|+..+.. ......++.|+++||.|+++|+.+.++.+..
T Consensus 4 e~v~~~~~-dg~~~~a~~~~P~~--------~~~P~vl~~h~~~G~~--~~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~ 72 (233)
T d1dina_ 4 EGISIQSY-DGHTFGALVGSPAK--------APAPVIVIAQEIFGVN--AFMRETVSWLVDQGYAAVCPDLYARQAPGTA 72 (233)
T ss_dssp TTCCEECT-TSCEECEEEECCSS--------SSEEEEEEECCTTBSC--HHHHHHHHHHHHTTCEEEEECGGGGTSTTCB
T ss_pred eEEEEEcC-CCCEEEEEEECCCC--------CCceEEEEeCCCCCCC--HHHHHHHHHHHhcCCcceeeeeccCCCcCcc
Confidence 45678887 99999999999954 5689999999764322 3345578899999999999998665443321
Q ss_pred H-----H--Hh---hccCC-CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccCh
Q 004816 539 F-----R--ER---LLGRW-GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADL 607 (729)
Q Consensus 539 ~-----~--~~---~~~~~-~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~ 607 (729)
. . .. ..... ......|+.++++++.+.+. +.+||+++|+|+||.+++.++.++. +.++++.++..-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~~~-~~~~~~~~~~~~- 149 (233)
T d1dina_ 73 LDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAKGY-VDRAVGYYGVGL- 149 (233)
T ss_dssp CCTTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHHTC-SSEEEEESCSCG-
T ss_pred cChHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccccc-cceecccccccc-
Confidence 1 1 00 00011 11236889999999988764 5589999999999999999887654 556666655311
Q ss_pred hHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCC
Q 004816 608 SMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~g 687 (729)
.++...+.++++|+|++||++|..+|.++.+.+.+.++ .++++++++|||++
T Consensus 150 ---------------------------~~~~~~~~~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~-~~~~~~~~~y~ga~ 201 (233)
T d1dina_ 150 ---------------------------EKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFG-ANPLLQVHWYEEAG 201 (233)
T ss_dssp ---------------------------GGGGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHT-TCTTEEEEEETTCC
T ss_pred ---------------------------ccchhhhhccCCcceeeecccccCCCHHHHHHHHHHHh-cCCCEEEEEECCCC
Confidence 01223455788999999999999999999888887775 57899999999999
Q ss_pred cccCCc-------ccHHHHHHHHHHHHHH
Q 004816 688 HGFRKA-------ENIKFTLEQQMVFFAR 709 (729)
Q Consensus 688 H~~~~~-------~~~~~~~~~~~~fl~~ 709 (729)
|+|..+ +..+..++++++||..
T Consensus 202 HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 202 HSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp TTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 998532 2234567888888864
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.85 E-value=6.2e-21 Score=199.04 Aligned_cols=249 Identities=18% Similarity=0.157 Sum_probs=180.2
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCC--CCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT--SEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~--~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
+.+.++.+ ||.+|.+.+|.|++ .++.|+||+.||... ......+....+.|+++||+|+.+|.||.++++
T Consensus 6 ~~v~ipmr-DGv~L~~~vy~P~~-------~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~ 77 (347)
T d1ju3a2 6 SNVMVPMR-DGVRLAVDLYRPDA-------DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASE 77 (347)
T ss_dssp EEEEEECT-TSCEEEEEEEEECC-------SSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCC
T ss_pred eCeEEECC-CCCEEEEEEEEcCC-------CCCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccC
Confidence 56888988 99999999999976 567899999998532 222233445678999999999999999998877
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH--h-h
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML--R-A 612 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~--~-~ 612 (729)
..+. ....+..|..++++|+.+++..| .||+++|+|+||++++.+|. .|+.+++++...+..|+... . .
T Consensus 78 G~~~------~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~ 150 (347)
T d1ju3a2 78 GEFV------PHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGP 150 (347)
T ss_dssp SCCC------TTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCT
T ss_pred Cccc------cccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhc
Confidence 6542 23345688999999999999887 79999999999999999988 88899999999988765210 0 0
Q ss_pred h------------------------cc------------hhhh----------------------hhhhhhcC---Chhh
Q 004816 613 E------------------------TH------------KFES----------------------RYIDNLVG---SEKD 631 (729)
Q Consensus 613 ~------------------------~~------------~~~~----------------------~~~~~~~~---~~~~ 631 (729)
. .. .... .+...+.. ..+.
T Consensus 151 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (347)
T d1ju3a2 151 GGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDES 230 (347)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHH
T ss_pred CCccchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhh
Confidence 0 00 0000 00000000 1234
Q ss_pred hhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc------------CCcccHHHH
Q 004816 632 YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF------------RKAENIKFT 699 (729)
Q Consensus 632 ~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~------------~~~~~~~~~ 699 (729)
+.+.++..++.++++|+|+++|..|..+ ..+.+++++++. +.+.++++-|. +|.. .......+.
T Consensus 231 w~~~~~~~~~~~i~vP~L~i~G~~D~~~--~~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~~~~~~~~~ 306 (347)
T d1ju3a2 231 WQSISLFERLGGLATPALITAGWYDGFV--GESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIAATYPIQEA 306 (347)
T ss_dssp HHTTCCHHHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGGGSCCHHHH
T ss_pred hhcCCHHHHhhcCCCCEEEeccccCCCc--chhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCccccccHHHH
Confidence 5566788889999999999999999764 457788888874 55778888875 4532 112235677
Q ss_pred HHHHHHHHHHHhCCCCCC-CCCCceecc
Q 004816 700 LEQQMVFFARVVGHFDVA-DEIIPIKID 726 (729)
Q Consensus 700 ~~~~~~fl~~~l~~~~~~-~~~~~~~~~ 726 (729)
.+.+++||+++|++.... ...|++.+.
T Consensus 307 ~~~~l~wfD~~LKg~~~~~~~~p~v~~~ 334 (347)
T d1ju3a2 307 TTMHKAFFDRHLRGETDALAGVPKVRLF 334 (347)
T ss_dssp HHHHHHHHHHHTSCCTTTTTTCCSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCceEEE
Confidence 788899999999977554 456777764
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.85 E-value=3.5e-20 Score=196.58 Aligned_cols=205 Identities=17% Similarity=0.172 Sum_probs=153.0
Q ss_pred hhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC--------------CCCCcEEEEEc
Q 004816 513 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK--------------ADEKRLCITGG 578 (729)
Q Consensus 513 ~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~--------------~d~~ri~i~G~ 578 (729)
..++|+++||+|+.+|.||.++++..+.. ++..+.+|..++|+||.++.. ....||+++|+
T Consensus 128 ~~~~~~~~GYavv~~D~RG~g~S~G~~~~-----~~~~e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~ 202 (405)
T d1lnsa3 128 LNDYFLTRGFASIYVAGVGTRSSDGFQTS-----GDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGK 202 (405)
T ss_dssp HHHHHHTTTCEEEEECCTTSTTSCSCCCT-----TSHHHHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEE
T ss_pred chHHHHhCCCEEEEECCCCCCCCCCcccc-----CChhhhhhHHHHHHHHHhcccccccccccccccccccCCeeEEEec
Confidence 45789999999999999999987765432 344568999999999976432 22358999999
Q ss_pred ChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhh--------------------------------------h
Q 004816 579 SAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFE--------------------------------------S 619 (729)
Q Consensus 579 S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~--------------------------------------~ 619 (729)
||||++++.+|. .|+.++|+|...++.|+........... .
T Consensus 203 SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (405)
T d1lnsa3 203 SYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLA 282 (405)
T ss_dssp THHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhhhhhhccccccccccchhhhchhhhhhccc
Confidence 999999999988 8889999999999998754321100000 0
Q ss_pred hhhhhh----cCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCccc
Q 004816 620 RYIDNL----VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695 (729)
Q Consensus 620 ~~~~~~----~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~ 695 (729)
...... ....+.+.+.+++.++++|++|+|+++|..|..+++.++.+++++|+ .+.+.++++.|+ +|.......
T Consensus 283 ~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~~~~~~~~y~al~-~~~~~~Lilgpw-~H~~~~~~~ 360 (405)
T d1lnsa3 283 EMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALP-EGHAKHAFLHRG-AHIYMNSWQ 360 (405)
T ss_dssp HHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSC-TTCCEEEEEESC-SSCCCTTBS
T ss_pred hhhhhhhhccccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCCHHHHHHHHHHHH-hCCCcEEEEeCC-CCCCCcccc
Confidence 000000 01235577789999999999999999999999999999999999996 456788888885 787543333
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCcee
Q 004816 696 IKFTLEQQMVFFARVVGHFDVADEIIPIK 724 (729)
Q Consensus 696 ~~~~~~~~~~fl~~~l~~~~~~~~~~~~~ 724 (729)
..++.+.+++||+.+|++.++....+++.
T Consensus 361 ~~d~~~~~~~wFD~~LkG~~ng~~~~~~~ 389 (405)
T d1lnsa3 361 SIDFSETINAYFVAKLLDRDLNLNLPPVI 389 (405)
T ss_dssp SCCHHHHHHHHHHHHHTTCCCCCCCCSEE
T ss_pred cchHHHHHHHHHHHHhCCCCCCCCCCCEE
Confidence 34567788999999999887764455544
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.85 E-value=2.6e-20 Score=196.00 Aligned_cols=260 Identities=17% Similarity=0.165 Sum_probs=178.0
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC----Cc-----cccchhhhHHHhhCCcEEEEec
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS----EA-----RGILNLSIQYWTSRGWAFVDVN 528 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~----~~-----~~~~~~~~~~la~~G~~v~~~d 528 (729)
.+.+.++.+ ||.+|.+.++.|++ .++.|+||+.|+.... .. ...+....++|+++||+|+.+|
T Consensus 24 ~~~v~i~~r-DG~~L~~~v~~P~~-------~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d 95 (381)
T d1mpxa2 24 KREVMIPMR-DGVKLHTVIVLPKG-------AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 95 (381)
T ss_dssp EEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred EEEEEEECC-CCCEEEEEEEEeCC-------CCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEe
Confidence 367889998 99999999999976 5689999999864211 10 1122346788999999999999
Q ss_pred CCCCCCCchhHHHh-----hccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEec
Q 004816 529 YGGSTGYGREFRER-----LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLY 602 (729)
Q Consensus 529 ~rGs~g~g~~~~~~-----~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~ 602 (729)
.||.++++..+... .....+..+++|..++++|+.++..++.+||+++|+|+||++++.++. .|+.++++|+.+
T Consensus 96 ~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~ 175 (381)
T d1mpxa2 96 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPES 175 (381)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred cCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeec
Confidence 99988876654322 122344557999999999999998888899999999999999988887 888999999999
Q ss_pred cccChhHHhhhcc------hh------------------------hhhhhh--------hhc---------------CCh
Q 004816 603 GVADLSMLRAETH------KF------------------------ESRYID--------NLV---------------GSE 629 (729)
Q Consensus 603 ~~~d~~~~~~~~~------~~------------------------~~~~~~--------~~~---------------~~~ 629 (729)
|+.|......... .. ...+.. ... ...
T Consensus 176 ~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 255 (381)
T d1mpxa2 176 PMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYD 255 (381)
T ss_dssp CCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSC
T ss_pred cccccccccccccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCCcc
Confidence 9887542210000 00 000000 000 001
Q ss_pred hhhhhcCccc--ccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHh---CCCCEEEEEECCCCcc-------------cC
Q 004816 630 KDYYEKSPIN--FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE---NGLPVALVEYEGEQHG-------------FR 691 (729)
Q Consensus 630 ~~~~~~sp~~--~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~---~g~~~~~~~~~~~gH~-------------~~ 691 (729)
+.+...++.. ...+|++|+|+++|..|...... +...++.++. .+.+.++++-|. +|. |.
T Consensus 256 ~~w~~~s~~~~~~~~~i~vP~l~i~G~~d~~~~~~-~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~~~~~~~~~ 333 (381)
T d1mpxa2 256 AFWQEQALDKVMARTPLKVPTMWLQGLWDQEDMWG-AIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFE 333 (381)
T ss_dssp HHHHTTCHHHHHHTSCCCSCEEEEEETTCSSCSSH-HHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECS
T ss_pred chhhhcCchhhhhhccccCceEEEeccccCCcccc-HHHHHHHHHHhccccCCceEEEecC-cCCCCccCCCcCCccccc
Confidence 2233344433 34568899999999999765443 4455555543 456889999986 564 11
Q ss_pred CcccHHHHHHHHHHHHHHHhCCCCCCCCCCceeccC
Q 004816 692 KAENIKFTLEQQMVFFARVVGHFDVADEIIPIKIDN 727 (729)
Q Consensus 692 ~~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~~ 727 (729)
.........+.+++||++||++..+....|++.+-.
T Consensus 334 ~~~~~~~~~~~~l~wFD~~LKg~~~~~~~ppV~~~~ 369 (381)
T d1mpxa2 334 GDTARQFRHDVLRPFFDQYLVDGAPKADTPPVFIYN 369 (381)
T ss_dssp SCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEE
T ss_pred cchhhhhHHHHHHHHHHHHhCCCCCCCCCCCEEEEE
Confidence 222233445567899999999877666678887653
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.84 E-value=2.2e-20 Score=185.19 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=145.0
Q ss_pred EEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc-ccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCccc
Q 004816 473 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD 551 (729)
Q Consensus 473 ~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~ 551 (729)
...+|.|.+ ++.|+||++|||+|.... ..+...++.|+++||.|+.+|||.+++.... ..
T Consensus 51 ~lDiy~P~~--------~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~~~p-----------~~ 111 (261)
T d2pbla1 51 KFDLFLPEG--------TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRIS-----------EI 111 (261)
T ss_dssp EEEEECCSS--------SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSCHH-----------HH
T ss_pred EEEEeccCC--------CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeecccccccccccCc-----------hh
Confidence 335677854 457999999999875433 4566788999999999999999987653211 23
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhC-------CCcceEEEEeccccChhHHhhhcchhhhhhhhh
Q 004816 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-------RDTFKAGASLYGVADLSMLRAETHKFESRYIDN 624 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~-------~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 624 (729)
++|+.++++|+.++. ++||+|+|||+||+++++++.. ...+++++.++|+.++..+.... ....
T Consensus 112 ~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 182 (261)
T d2pbla1 112 TQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS------MNEK 182 (261)
T ss_dssp HHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGST------THHH
T ss_pred HHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhhh------hccc
Confidence 799999999999873 4799999999999999887752 24689999999999886543211 1111
Q ss_pred hcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 625 LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 625 ~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
+..+++.+...||+.++.+..+|+|++||++|..++..|+++++++|+. +.+++|+++|
T Consensus 183 ~~~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~~~qs~~~~~~l~~-----~~~~~~~~~H 241 (261)
T d2pbla1 183 FKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWDA-----DHVIAFEKHH 241 (261)
T ss_dssp HCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHTC-----EEEEETTCCT
T ss_pred ccCCHHHHHHhCchhhcccCCCeEEEEEecCCCchHHHHHHHHHHHhCC-----CceEeCCCCc
Confidence 2235778888999999999999999999999999999999999999853 7889999999
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=3.4e-19 Score=178.22 Aligned_cols=244 Identities=14% Similarity=0.134 Sum_probs=182.4
Q ss_pred CEEEEEECCCC-----cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 155 DTVIFSNYKDQ-----RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 155 ~~i~~~~~~~~-----~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
.+|+|+...++ +||++|.++ +..++|+.. ......|+|||||++|+|++.... ...+|+++..
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG--~~~~~l~~~----~~~~~sP~wSPDGk~IAf~~~~~~------~~~~~~~~~~ 71 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESG------RSALVIQTLA 71 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEE----SSCEEEEEECTTSSEEEEEECTTS------SCEEEEEETT
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCC--CCcEEEecC----CCceeeeEECCCCCEEEEEEeecc------Ccceeeeecc
Confidence 36778776543 799999998 889999876 344578999999999999987653 3579999999
Q ss_pred CCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 230 GQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 230 ~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
++..++++...+....+.|||||++|++..... + ...+...... ... ........ .....+.|++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~-~----~~~~~~~~~~-~~~---~~~~~~~~----~~~~~~~~~~~~ 138 (269)
T d2hqsa1 72 NGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT-G----SLNLYVMDLA-SGQ---IRQVTDGR----SNNTEPTWFPDS 138 (269)
T ss_dssp TCCEEEEECCSSCEEEEEECTTSSEEEEEECTT-S----SCEEEEEETT-TCC---EEECCCCS----SCEEEEEECTTS
T ss_pred cCceeEEeeeecccccceecCCCCeeeEeeecC-C----ccceeecccc-ccc---ceeeeecc----cccccccccccc
Confidence 999999998877788899999999999988433 2 2344444433 222 12222222 333567899999
Q ss_pred c-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCC
Q 004816 310 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 388 (729)
Q Consensus 310 ~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g 388 (729)
+ +++.... .+..+|++.+++++....++........+.|++ +++.+++.+.+.+..+|++++.+++
T Consensus 139 ~~~~~~~~~-~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sp------------dg~~~~~~~~~~~~~~i~~~~~~~~ 205 (269)
T d2hqsa1 139 QNLAFTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQDLATG 205 (269)
T ss_dssp SEEEEEECT-TSSCEEEEEETTSSCCEECCCSSSEEEEEEECT------------TSSEEEEEEECSSCEEEEEEETTTC
T ss_pred ccceecccc-cCCceEeeeecccccceeeeccccccccccccc------------ccceeEEEeecCCceeeeEeecccc
Confidence 8 7777777 788899999999998888886665666677876 8889999999999999999999988
Q ss_pred ceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 389 SLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 389 ~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
..+.+.......... +++++.++|.. ..+...+||+++++++..++|+
T Consensus 206 ~~~~~~~~~~~~~p~~SPDG~~i~f~s-~~~~~~~l~~~~~dg~~~~~lt 254 (269)
T d2hqsa1 206 GVQVLSSTFLDETPSLAPNGTMVIYSS-SQGMGSVLNLVSTDGRFKARLP 254 (269)
T ss_dssp CEEECCCSSSCEEEEECTTSSEEEEEE-EETTEEEEEEEETTSCCEEECC
T ss_pred cceEeecCccccceEECCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEEe
Confidence 876665544443333 66666666654 4556678999999999877766
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.84 E-value=2.9e-20 Score=191.19 Aligned_cols=236 Identities=17% Similarity=0.117 Sum_probs=154.2
Q ss_pred CcEEEEeeccCCCe-EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc-ccchhhhHHHhh-CCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQ-KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~-~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~la~-~G~~v~~~d~rGs~ 533 (729)
+.+.+.+++. +|. .+.+++|.|++ ..++.|+||++|||++.... ..+......++. .||.|+.+|||..+
T Consensus 49 ~~~~~~~~~~-~g~~~i~~~~~~P~~------~~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~p 121 (317)
T d1lzla_ 49 SLRELSAPGL-DGDPEVKIRFVTPDN------TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAP 121 (317)
T ss_dssp EEEEEEECCS-TTCCCEEEEEEEESS------CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred eEEEEEEecC-CCCceEEEEEECCCC------CCCCCcEEEEecCcccccccccccchHHHhHHhhcCCccccccccccc
Confidence 4577888887 775 69999999976 24567999999999764332 234445555654 59999999999876
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhC-----CCcceEEEEecccc
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF-----RDTFKAGASLYGVA 605 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~-----~~~~~a~v~~~~~~ 605 (729)
+..- ...++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.+ .......+...+..
T Consensus 122 e~~~-----------~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (317)
T d1lzla_ 122 ETTF-----------PGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPEL 190 (317)
T ss_dssp TSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCC
T ss_pred cccc-----------cccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccccccccccccc
Confidence 5321 12368888888888764 45789999999999999999888751 11223333333322
Q ss_pred Chh----HHhhhcch----------hhhhhhhhhcC---ChhhhhhcCcccccC-CCCCCEEEEEeCCCCCCChHHHHHH
Q 004816 606 DLS----MLRAETHK----------FESRYIDNLVG---SEKDYYEKSPINFVD-KFSCPIILFQGLEDKVVPPDQARKI 667 (729)
Q Consensus 606 d~~----~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~sp~~~~~-~i~~PvL~i~G~~D~~vp~~~~~~~ 667 (729)
+.. .+...... ....+...... ++......+|..... ...+|+|+++|++|. ...++++|
T Consensus 191 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~--l~~~~~~~ 268 (317)
T d1lzla_ 191 DDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDP--LRDEGIEY 268 (317)
T ss_dssp CTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCT--THHHHHHH
T ss_pred cccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCC--CHHHHHHH
Confidence 211 11000000 00000000000 111111223322222 223799999999994 46799999
Q ss_pred HHHHHhCCCCEEEEEECCCCcccCC---cccHHHHHHHHHHHHHHHhC
Q 004816 668 YKALKENGLPVALVEYEGEQHGFRK---AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 668 ~~~l~~~g~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~fl~~~l~ 712 (729)
+++|+++|+++++++|||++|+|.. .....+..+++++|++++|+
T Consensus 269 ~~~L~~~G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 269 ALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp HHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998742 23345677889999999987
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.83 E-value=3.5e-20 Score=193.48 Aligned_cols=238 Identities=15% Similarity=0.125 Sum_probs=162.6
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc---cchhhhHHHhhCCcEEEEecCCCC
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYWTSRGWAFVDVNYGGS 532 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~---~~~~~~~~la~~G~~v~~~d~rGs 532 (729)
...+..++.+. ||..|.+.+|.|++ ..++.|+||++|||++..... .+...++.++++|+.|+.+|||.+
T Consensus 77 v~~~~~~i~~~-dg~~i~~~iy~P~~------~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla 149 (358)
T d1jkma_ 77 VETSTETILGV-DGNEITLHVFRPAG------VEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNA 149 (358)
T ss_dssp EEEEEEEEECT-TSCEEEEEEEEETT------CCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred ccEEEEEEeCC-CCCEEEEEEEecCC------CCCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeeccc
Confidence 34567778887 99999999999987 245789999999997643332 345678889999999999999986
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh------CCCcceEEEEecccc
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA------FRDTFKAGASLYGVA 605 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~------~~~~~~a~v~~~~~~ 605 (729)
++...+. .+ ...++|+.++++|+.++ ..+|.+||+|+|+|.||++++.++. ....+.+.++.+|+.
T Consensus 150 ~~~~pe~------~~-p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~ 222 (358)
T d1jkma_ 150 WTAEGHH------PF-PSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYI 222 (358)
T ss_dssp EETTEEC------CT-THHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCC
T ss_pred ccccccC------CC-chhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCcccccccccccee
Confidence 4322111 11 23589999999999876 2357889999999999999977763 245678899998876
Q ss_pred ChhHHhhhcchh------------------hhhhhhhhcCChhhhhhcCccccc-------CCCCCCEEEEEeCCCCCCC
Q 004816 606 DLSMLRAETHKF------------------ESRYIDNLVGSEKDYYEKSPINFV-------DKFSCPIILFQGLEDKVVP 660 (729)
Q Consensus 606 d~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~sp~~~~-------~~i~~PvL~i~G~~D~~vp 660 (729)
+........... ...+....... .....+|.... .+--+|+||++|+.|.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l-- 298 (358)
T d1jkma_ 223 SGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPT--GEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPL-- 298 (358)
T ss_dssp CCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSS--STTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTT--
T ss_pred ccccCccchhhcccccchhcccccccchhhhhhHHhhcCCc--cCCccCccccccccchhhccCCCCEEEEECCCCCC--
Confidence 542211100000 00011111100 00111221110 01125899999999965
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEECCCCcccC------CcccHHHHHHHHHHHHHHHh
Q 004816 661 PDQARKIYKALKENGLPVALVEYEGEQHGFR------KAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 661 ~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~------~~~~~~~~~~~~~~fl~~~l 711 (729)
..+++.|+++|+++|+++++++|+|++|+|. .++...+..+.+..|+.++.
T Consensus 299 ~~e~~~~~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~~ 355 (358)
T d1jkma_ 299 RDEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 355 (358)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999862 12444567788888887653
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=6.2e-21 Score=187.50 Aligned_cols=207 Identities=15% Similarity=0.131 Sum_probs=137.2
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcc----cHHHHHHHHHHHHhCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV----DVNDCCSCATFLVGSG 566 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~----~~~D~~~~~~~l~~~~ 566 (729)
+.|+||++||.++. ...+...++.|+++||.|+++|+||.+.+...........+... ...++..+..++...+
T Consensus 23 ~~~~vl~lHG~~~~--~~~~~~~~~~la~~G~~V~~~D~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (238)
T d1ufoa_ 23 PKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAE 100 (238)
T ss_dssp CCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEEecCCCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhcc
Confidence 45899999998543 34566778899999999999999986654322111111000000 1122233333344345
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccC-CCC
Q 004816 567 KADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD-KFS 645 (729)
Q Consensus 567 ~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-~i~ 645 (729)
.++.++++++|+|+||++++.++...+.++++++..+..+.............. ...+...++..+.. ..+
T Consensus 101 ~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 172 (238)
T d1ufoa_ 101 RRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQGQVVEDPG--------VLALYQAPPATRGEAYGG 172 (238)
T ss_dssp HHHCCCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCCCTTCCCCCHH--------HHHHHHSCGGGCGGGGTT
T ss_pred ccCCceEEEEEecccHHHHHHHHhcCcchhheeeeeeecccccccccccccccc--------ccchhhhhhhhhhhhhcC
Confidence 567889999999999999999988434566777666654433221111110000 12223445544443 346
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCC--CEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGL--PVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+|+|++||++|.+||++++.+++++|++++. .+++++++|+||.+. .+.++.+.+||.++|.
T Consensus 173 ~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~g~gH~~~-----~~~~~~~~~f~~~~l~ 236 (238)
T d1ufoa_ 173 VPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLT-----PLMARVGLAFLEHWLE 236 (238)
T ss_dssp CCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCccCHHHHHHHHHHHHhcCCCceEEEEEECCCCCccC-----HHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999876 478899999999864 2456778899999885
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.82 E-value=6.3e-20 Score=187.80 Aligned_cols=230 Identities=18% Similarity=0.213 Sum_probs=160.0
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cchhhhHHHh-hCCcEEEEecCCCC
Q 004816 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWT-SRGWAFVDVNYGGS 532 (729)
Q Consensus 455 ~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~la-~~G~~v~~~d~rGs 532 (729)
....+.++++.. +| .+.+.+|.|+. +.|+||++|||++..... .+....+.++ +.|+.|+.+|||.+
T Consensus 53 ~~~~~~~~i~~~-~g-~i~~~iy~P~~---------~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrla 121 (311)
T d1jjia_ 53 VERVEDRTIKGR-NG-DIRVRVYQQKP---------DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLA 121 (311)
T ss_dssp CSEEEEEEEEET-TE-EEEEEEEESSS---------SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCT
T ss_pred cceEEEEEEeCC-CC-cEEEEEEcCCC---------CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEeccccc
Confidence 345677888875 55 78999999854 349999999997644332 3444555554 46999999999987
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh-----CCCcceEEEEeccc
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-----FRDTFKAGASLYGV 604 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-----~~~~~~a~v~~~~~ 604 (729)
+++.-. ..++|+..+++|+.++ ..+|++||+|+|+|+||++++.++. ......+.++.+|.
T Consensus 122 p~~~~p-----------~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~ 190 (311)
T d1jjia_ 122 PEHKFP-----------AAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPV 190 (311)
T ss_dssp TTSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCC
T ss_pred cccccc-----------hhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecce
Confidence 764321 2378999999999885 4678999999999999999887753 34567888999998
Q ss_pred cChhHHhhhcch-------hhhh----hhhhhcCCh--hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHH
Q 004816 605 ADLSMLRAETHK-------FESR----YIDNLVGSE--KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL 671 (729)
Q Consensus 605 ~d~~~~~~~~~~-------~~~~----~~~~~~~~~--~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l 671 (729)
.+.......... .... +........ ......+|+....+..+|+|+++|+.|.+ ..++.+++++|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l--~d~~~~~~~~L 268 (311)
T d1jjia_ 191 VNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPL--RDEGEVFGQML 268 (311)
T ss_dssp CCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTT--HHHHHHHHHHH
T ss_pred eeeccCcccccccccccccccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCC--hHHHHHHHHHH
Confidence 775321111000 0000 001111111 11123477766555568999999999965 46899999999
Q ss_pred HhCCCCEEEEEECCCCcccCC----cccHHHHHHHHHHHHH
Q 004816 672 KENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFA 708 (729)
Q Consensus 672 ~~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~ 708 (729)
+++|+++++++|+|++|+|.. .+...++++.+.+|+.
T Consensus 269 ~~~Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl~ 309 (311)
T d1jjia_ 269 RRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLV 309 (311)
T ss_dssp HHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHhC
Confidence 999999999999999998742 2234567778888873
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.82 E-value=1.2e-18 Score=175.10 Aligned_cols=245 Identities=14% Similarity=0.070 Sum_probs=168.5
Q ss_pred EEEE--CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 150 FRIF--GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 150 ~~~~--~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
.+|+ |++|+|+. .++||++|+++ +++++||.. ......++|||||++|+|++...... ...+||+++
T Consensus 6 ~sPdi~G~~v~f~~--~~dl~~~d~~~--g~~~~Lt~~----~~~~~~p~~SPDG~~iaf~~~~~~~~---~~~~i~~~~ 74 (281)
T d1k32a2 6 LNPDIHGDRIIFVC--CDDLWEHDLKS--GSTRKIVSN----LGVINNARFFPDGRKIAIRVMRGSSL---NTADLYFYN 74 (281)
T ss_dssp EEEEEETTEEEEEE--TTEEEEEETTT--CCEEEEECS----SSEEEEEEECTTSSEEEEEEEESTTC---CEEEEEEEE
T ss_pred cCCCCCCCEEEEEe--CCcEEEEECCC--CCEEEEecC----CCcccCEEECCCCCEEEEEEeeCCCC---CceEEEEEE
Confidence 5677 99999996 45799999998 899999987 35568899999999999998654322 146799999
Q ss_pred cCCCceEEeeeCCC-------eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccc
Q 004816 228 LNGQNIQVLVSGSD-------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 300 (729)
Q Consensus 228 l~~g~~~~lt~~~~-------~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 300 (729)
+.+++.++|+.... ....+.|||||+.|+|........ ....++.++.+ ++.. ...... .
T Consensus 75 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~--~~~~~~~~~~~-~~~~---~~~~~~-------~ 141 (281)
T d1k32a2 75 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS--SMTCLYRVEND-GINF---VPLNLG-------P 141 (281)
T ss_dssp TTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST--TCCEEEEEEGG-GTEE---EECCSC-------S
T ss_pred ecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCc--cceeeeeecCC-Ccee---EEecCC-------c
Confidence 99999999986442 234578999999999987443321 33456777766 4432 222221 2
Q ss_pred cCceeCCCCc-EEEEEecCCC--------ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEE
Q 004816 301 TEPKWSSKGE-LFFVTDRKNG--------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 371 (729)
Q Consensus 301 ~~~~wspDG~-l~~~~~~~~g--------~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~ 371 (729)
....|.+||. +++....... ...........+....++........+.| .+..+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 207 (281)
T d1k32a2 142 ATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVI--------------VGHRIYFI 207 (281)
T ss_dssp CSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEE--------------ETTEEEEE
T ss_pred cceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeee--------------ecccccee
Confidence 3466778887 6665443121 11222233334444444433322223333 34568888
Q ss_pred EEECCeEEEEEEECCCCceEeeccCC-cceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 372 YRQNGRSYLGILDDFGHSLSLLDIPF-TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 372 s~~~g~~~ly~~d~~~g~~~~lt~~~-~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
.+..+..+||++++++++.++|+... ..+..+++++++++|... ..||++|+++++.++|+
T Consensus 208 ~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 208 TDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKG-----GSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp ECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEET-----TEEEEECTTTCCEEECC
T ss_pred cccccccceEEEeCCCCceEEeecCCCcccccCcCCCCEEEEEeC-----CEEEEEECCCCCEEEec
Confidence 88889999999999999999998753 345566888888777543 47999999999987765
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.81 E-value=2.6e-19 Score=171.07 Aligned_cols=186 Identities=12% Similarity=0.100 Sum_probs=136.3
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC-C----cccHHHHHHHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW-G----IVDVNDCCSCATFLV 563 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~-~----~~~~~D~~~~~~~l~ 563 (729)
.++.|+||++||.++ ....+...+..++ .++.|++++.....+.+..+........ . ....+++...++++.
T Consensus 11 ~~~~P~vi~lHG~g~--~~~~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 87 (202)
T d2h1ia1 11 DTSKPVLLLLHGTGG--NELDLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDEAA 87 (202)
T ss_dssp CTTSCEEEEECCTTC--CTTTTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCC--CHHHHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 456799999999743 3345566667666 5788888875422221111111100000 0 012456777788888
Q ss_pred hCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccC
Q 004816 564 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 642 (729)
Q Consensus 564 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 642 (729)
++..+|.+||+++|+|+||++++.++. +++++.++++.+|..... +.....
T Consensus 88 ~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~ 139 (202)
T d2h1ia1 88 KEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR----------------------------GMQLAN 139 (202)
T ss_dssp HHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS----------------------------SCCCCC
T ss_pred HhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc----------------------------cccccc
Confidence 888899999999999999999999988 999999999998864321 111223
Q ss_pred CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 643 ~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
....|++++||++|.+||+++++++++.|+++|.+++++.||+ ||.+. .+.++.+.+||.+.+
T Consensus 140 ~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~~~~~~~wl~k~f 202 (202)
T d2h1ia1 140 LAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTMHWENR-GHQLT-----MGEVEKAKEWYDKAF 202 (202)
T ss_dssp CTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHHHHHHHHHHHHHC
T ss_pred cccchhhcccccCCCccCHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHHHhC
Confidence 4567999999999999999999999999999999999999996 89874 356788999998864
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=4e-19 Score=177.26 Aligned_cols=189 Identities=18% Similarity=0.165 Sum_probs=134.6
Q ss_pred CCCCCEEEEEcCCCCCCcc---ccchh----hhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEAR---GILNL----SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF 561 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~---~~~~~----~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~ 561 (729)
.++.|+||++|||++.... ..+.. ++..++++||.|+.+|||.+++..- ...++|+.++++|
T Consensus 28 ~~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~~~-----------~~~~~d~~~~~~~ 96 (263)
T d1vkha_ 28 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEITN-----------PRNLYDAVSNITR 96 (263)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSCT-----------THHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcchhh-----------hHHHHhhhhhhhc
Confidence 3567999999998654222 23333 3455568899999999998775321 1247999999999
Q ss_pred HHhCCCCCCCcEEEEEcChHHHHHHHHHh-CC-----------------CcceEEEEeccccChhHHhhhcchhhhhhhh
Q 004816 562 LVGSGKADEKRLCITGGSAGGYTTLAALA-FR-----------------DTFKAGASLYGVADLSMLRAETHKFESRYID 623 (729)
Q Consensus 562 l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~-----------------~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 623 (729)
+.++. +.++|+|+|||+||.+++.++. .+ ..+.+.+...+..++..+......... +..
T Consensus 97 l~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 173 (263)
T d1vkha_ 97 LVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDC-FTR 173 (263)
T ss_dssp HHHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHH-HHH
T ss_pred ccccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccch-hhh
Confidence 99874 5689999999999999998875 22 145777777888887665543332221 222
Q ss_pred hhcC-ChhhhhhcC------cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC
Q 004816 624 NLVG-SEKDYYEKS------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691 (729)
Q Consensus 624 ~~~~-~~~~~~~~s------p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 691 (729)
..+. ....+.... ....+.++.+|+|++||++|.+||++++.+++++|++.|++++++++++++|...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~g~~~~~~~~~~~~H~~~ 248 (263)
T d1vkha_ 174 LAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDV 248 (263)
T ss_dssp HHCTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGGGG
T ss_pred cccccccccccccccccCccccccccccCCCeeeeecCCCcccCHHHHHHHHHHHHHCCCCEEEEEECCCCchhh
Confidence 2221 121111111 1223556779999999999999999999999999999999999999999999743
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.81 E-value=3.6e-19 Score=182.14 Aligned_cols=235 Identities=18% Similarity=0.207 Sum_probs=158.3
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc-cccchhhhHHHhhCC-cEEEEecCCCCC
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRG-WAFVDVNYGGST 533 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~la~~G-~~v~~~d~rGs~ 533 (729)
...+.+.+.. +|..+.+.+|.|++ ..++.|+||++|||++... ...+......++.+| +.|+.+|||..+
T Consensus 44 ~~~~~~~~~~--~g~~i~~~~y~P~~------~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p 115 (308)
T d1u4na_ 44 AEVREFDMDL--PGRTLKVRMYRPEG------VEPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAP 115 (308)
T ss_dssp SEEEEEEEEE--TTEEEEEEEEECTT------CCSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred CcEEEEEEec--CCceEEEEEEeccc------cCCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccc
Confidence 3456666665 79999999999976 2457899999999965433 234555667777765 668899999765
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEEEEecccc
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F----RDTFKAGASLYGVA 605 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~----~~~~~a~v~~~~~~ 605 (729)
+... ....+|+..+++|+.++ ..+|++||+++|+|+||++++.++. . ...+.+..+.++..
T Consensus 116 ~~~~-----------p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (308)
T d1u4na_ 116 EHKF-----------PAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPST 184 (308)
T ss_dssp TSCT-----------THHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCC
T ss_pred cccc-----------ccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCccccccccccc
Confidence 4321 23478999999999876 3688999999999999999988875 2 23445566666654
Q ss_pred ChhHHhh------hcc--hh----hhhhhhhhcCC--hhhhhhcCcccccCCCC-CCEEEEEeCCCCCCChHHHHHHHHH
Q 004816 606 DLSMLRA------ETH--KF----ESRYIDNLVGS--EKDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKA 670 (729)
Q Consensus 606 d~~~~~~------~~~--~~----~~~~~~~~~~~--~~~~~~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~ 670 (729)
+...... ... .. ........... .......++........ +|+|+++|+.|.+ ..++..|+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l--~~~~~~~~~~ 262 (308)
T d1u4na_ 185 GYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPL--RDVGKLYAEA 262 (308)
T ss_dssp CCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTT--HHHHHHHHHH
T ss_pred ccccccccchhhhccccccccchhhhhhhhcccCccccccchhhhhhhchhhcCCCCeeEEecCcCCc--hHHHHHHHHH
Confidence 4321100 000 00 00001111111 11112223333333333 5899999999965 4789999999
Q ss_pred HHhCCCCEEEEEECCCCcccCC----cccHHHHHHHHHHHHHHHh
Q 004816 671 LKENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 671 l~~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l 711 (729)
|+++|+++++++|||++|+|.. .....+.++.+.+||++.|
T Consensus 263 L~~~G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 263 LNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHTTCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998743 2334578889999999876
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.81 E-value=9.4e-19 Score=184.48 Aligned_cols=261 Identities=19% Similarity=0.180 Sum_probs=178.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC----------CccccchhhhHHHhhCCcEEEE
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS----------EARGILNLSIQYWTSRGWAFVD 526 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~----------~~~~~~~~~~~~la~~G~~v~~ 526 (729)
..+.+.++.+ ||.+|.+.+|.|++ .++.|+||+.|+.... ..........++|+++||+|+.
T Consensus 27 ~~~~v~ipmr-DG~~L~~~v~~P~~-------~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~ 98 (385)
T d2b9va2 27 IKREVMVPMR-DGVKLYTVIVIPKN-------ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVF 98 (385)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEE
T ss_pred eEeEEEEECC-CCCEEEEEEEEcCC-------CCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEE
Confidence 3467889998 99999999999976 5689999998754210 0011223467889999999999
Q ss_pred ecCCCCCCCchhHHHh-----hccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEE
Q 004816 527 VNYGGSTGYGREFRER-----LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS 600 (729)
Q Consensus 527 ~d~rGs~g~g~~~~~~-----~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~ 600 (729)
+|+||.++++..+... ....++..+.+|..++++|+.++..++..||+++|+|+||++++.++. .++.+++++.
T Consensus 99 ~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~ 178 (385)
T d2b9va2 99 QDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAP 178 (385)
T ss_dssp EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEE
T ss_pred EcCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEE
Confidence 9999998887766433 233456667999999999999997778899999999999999999998 7889999999
Q ss_pred eccccChhHHhhhcc---------------------------hhhhhh---hhh---------h-----------c--C-
Q 004816 601 LYGVADLSMLRAETH---------------------------KFESRY---IDN---------L-----------V--G- 627 (729)
Q Consensus 601 ~~~~~d~~~~~~~~~---------------------------~~~~~~---~~~---------~-----------~--~- 627 (729)
..++.+......... .....+ ... . . .
T Consensus 179 ~~~~~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~ 258 (385)
T d2b9va2 179 ESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPA 258 (385)
T ss_dssp EEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCS
T ss_pred ecccccccccccccCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhhhccCcc
Confidence 888776432100000 000000 000 0 0 0
Q ss_pred ChhhhhhcCccccc--CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC--CCEEEEEECCCCcccC------------
Q 004816 628 SEKDYYEKSPINFV--DKFSCPIILFQGLEDKVVPPDQARKIYKALKENG--LPVALVEYEGEQHGFR------------ 691 (729)
Q Consensus 628 ~~~~~~~~sp~~~~--~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g--~~~~~~~~~~~gH~~~------------ 691 (729)
..+.+...++...+ .++.+|+|+++|..|... ...+.+.++.++..+ .+.++++-|. +|...
T Consensus 259 ~d~~w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~-~~g~~~~~~~l~~~~~~~~~~LiiGPw-~H~~~~~~~~~~g~~~~ 336 (385)
T d2b9va2 259 YDAFWQGQALDKILAQRKPTVPMLWEQGLWDQED-MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEF 336 (385)
T ss_dssp SSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSSC-SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEEC
T ss_pred cchhhhhcChhHHHhhccccCceEEEEecccCCc-ccchHHHHHHHHhhccCCCcEEEEeCC-cCCCccccccccccccc
Confidence 01222334443333 356789999999887654 456677777777653 4678888886 45421
Q ss_pred -CcccHHHHHHHHHHHHHHHhCCCCCCCCCCceeccC
Q 004816 692 -KAENIKFTLEQQMVFFARVVGHFDVADEIIPIKIDN 727 (729)
Q Consensus 692 -~~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~~ 727 (729)
.........+.+++||+.+|++.......|++.+-.
T Consensus 337 ~~~~~~~~~~~~~l~WFD~~LKG~~~~~~~p~v~~~~ 373 (385)
T d2b9va2 337 EGDTAHQYRRDVFRPFFDEYLKPGSASVHLPDAIIYN 373 (385)
T ss_dssp SSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEE
T ss_pred CcccchhhHHHHHHHHHHHHcCCCCCCCCCCCEEEEE
Confidence 111223345567899999999877666678887643
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.81 E-value=3e-18 Score=165.25 Aligned_cols=207 Identities=18% Similarity=0.276 Sum_probs=159.1
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCC---CCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP---TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~---~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
+.+... +| +|++++..|. ....|++|++||.| +++........+..|+++||.|+.+||||.+.+..
T Consensus 3 v~i~g~-~G-~Le~~~~~~~--------~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G 72 (218)
T d2i3da1 3 VIFNGP-AG-RLEGRYQPSK--------EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQG 72 (218)
T ss_dssp EEEEET-TE-EEEEEEECCS--------STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCS
T ss_pred EEEeCC-Cc-cEEEEEeCCC--------CCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCcc
Confidence 567786 66 8999877553 34468999999854 23333444557888999999999999998776543
Q ss_pred hHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchh
Q 004816 538 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKF 617 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~ 617 (729)
.+ +++..+.+|..++++|+..+... ..++.++|+|+||.+++.++.......+.++..+......
T Consensus 73 ~~------~~~~~e~~d~~aa~~~~~~~~~~-~~~~~~~g~S~G~~~a~~~a~~~~~~~~~~~~~~~~~~~~-------- 137 (218)
T d2i3da1 73 EF------DHGAGELSDAASALDWVQSLHPD-SKSCWVAGYSFGAWIGMQLLMRRPEIEGFMSIAPQPNTYD-------- 137 (218)
T ss_dssp CC------CSSHHHHHHHHHHHHHHHHHCTT-CCCEEEEEETHHHHHHHHHHHHCTTEEEEEEESCCTTTSC--------
T ss_pred cc------ccchhHHHHHHHHHhhhhccccc-ccceeEEeeehHHHHHHHHHHhhccccceeeccccccccc--------
Confidence 32 34556789999999999988654 3579999999999999999874445677777766533211
Q ss_pred hhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC-CCCEEEEEECCCCcccCCcccH
Q 004816 618 ESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN-GLPVALVEYEGEQHGFRKAENI 696 (729)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~~~~gH~~~~~~~~ 696 (729)
...+..+.+|+|++||..|.+++..+..++.+.++.. +..++++++||++|.|.. ..
T Consensus 138 --------------------~~~~~~~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~g--~~ 195 (218)
T d2i3da1 138 --------------------FSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFNG--KV 195 (218)
T ss_dssp --------------------CTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCTT--CH
T ss_pred --------------------hhhccccCCCceeeecccceecChHHHHHHHHHHhhccCCCccEEEeCCCCCCCcC--CH
Confidence 1223455789999999999999999999999999874 567899999999998864 55
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 004816 697 KFTLEQQMVFFARVVGHF 714 (729)
Q Consensus 697 ~~~~~~~~~fl~~~l~~~ 714 (729)
.+..+.+.+||+++|...
T Consensus 196 ~~l~~~v~~~l~~~l~~~ 213 (218)
T d2i3da1 196 DELMGECEDYLDRRLNGE 213 (218)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 688899999999999843
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=5.6e-19 Score=169.16 Aligned_cols=192 Identities=12% Similarity=0.048 Sum_probs=131.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|..+++..+.|.. +...|.||++||.+.+...+.....++.|+++||.|+++|+||.| ++-.......+
T Consensus 14 ~G~~i~y~~~~~~~-------~~~~~~vvllHG~~~~~~~w~~~~~~~~la~~gy~via~D~~G~G---~S~~~~~~~~~ 83 (208)
T d1imja_ 14 QGQALFFREALPGS-------GQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLG---HSKEAAAPAPI 83 (208)
T ss_dssp TTEEECEEEEECSS-------SCCSCEEEECCCTTCCHHHHHHHTHHHHHHHTTCEEEEECCTTSG---GGTTSCCSSCT
T ss_pred CCEEEEEEEecCCC-------CCCCCeEEEECCCCCChhHHhhhHHHHHHHHcCCeEEEeeccccc---CCCCCCccccc
Confidence 79999987777754 345678999999865543332223467899999999999999654 33221111111
Q ss_pred Ccc-cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhh
Q 004816 548 GIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 625 (729)
Q Consensus 548 ~~~-~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 625 (729)
... ..+++.+.++.+ +.+++.|+||||||.+++.++. +|++++++|+.+|......
T Consensus 84 ~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~~~---------------- 141 (208)
T d1imja_ 84 GELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI---------------- 141 (208)
T ss_dssp TSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS----------------
T ss_pred chhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccccc----------------
Confidence 111 234445555544 3478999999999999999888 9999999999988532110
Q ss_pred cCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHH
Q 004816 626 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 705 (729)
Q Consensus 626 ~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 705 (729)
.. ....++++|+|+++|++|.++|.+. +.++ .-...++++++++||... .++..++.+.+++
T Consensus 142 --~~---------~~~~~i~~P~Lii~G~~D~~~~~~~-----~~~~-~~~~~~~~~i~~~gH~~~-~~~p~~~~~~l~~ 203 (208)
T d1imja_ 142 --NA---------ANYASVKTPALIVYGDQDPMGQTSF-----EHLK-QLPNHRVLIMKGAGHPCY-LDKPEEWHTGLLD 203 (208)
T ss_dssp --CH---------HHHHTCCSCEEEEEETTCHHHHHHH-----HHHT-TSSSEEEEEETTCCTTHH-HHCHHHHHHHHHH
T ss_pred --cc---------ccccccccccccccCCcCcCCcHHH-----HHHH-hCCCCeEEEECCCCCchh-hhCHHHHHHHHHH
Confidence 01 1234678999999999998876532 2232 234679999999999632 3556688888999
Q ss_pred HHHH
Q 004816 706 FFAR 709 (729)
Q Consensus 706 fl~~ 709 (729)
||++
T Consensus 204 Fl~~ 207 (208)
T d1imja_ 204 FLQG 207 (208)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9874
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=5.6e-17 Score=161.77 Aligned_cols=255 Identities=11% Similarity=0.088 Sum_probs=189.9
Q ss_pred CcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC--cEEEEeCCCCCC
Q 004816 100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKDS 177 (729)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~d~~~~~~ 177 (729)
.+|.|+..+....+.+.||.++.+| +..+.|+..+..+ ....|+|+|+.|+|.....+ .+|.++..+ +
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG-~~~~~l~~~~~~~-------~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~ 73 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPL-------MSPAWSPDGSKLAYVTFESGRSALVIQTLAN--G 73 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCE-------EEEEECTTSSEEEEEECTTSSCEEEEEETTT--C
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCC-CCcEEEecCCCce-------eeeEECCCCCEEEEEEeeccCcceeeeeccc--C
Confidence 5788888877777778899998884 3677776443111 13468888889999987654 899999988 7
Q ss_pred CCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEE
Q 004816 178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAW 257 (729)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~ 257 (729)
..++++.. ......+.|||||+++++....... ..++.....................+.|+++++.+++
T Consensus 74 ~~~~~~~~----~~~~~~~~~spdg~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (269)
T d2hqsa1 74 AVRQVASF----PRHNGAPAFSPDGSKLAFALSKTGS------LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAF 143 (269)
T ss_dssp CEEEEECC----SSCEEEEEECTTSSEEEEEECTTSS------CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEE
T ss_pred ceeEEeee----ecccccceecCCCCeeeEeeecCCc------cceeecccccccceeeeecccccccccccccccccee
Confidence 78888876 3344667899999999998765432 3566666666666666666666677899999999998
Q ss_pred EEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 258 IEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
..... ...+|++.+++ .+.. ....... .....+.|+|||+ +++.... .+...|++++..++..+.
T Consensus 144 ~~~~~-----g~~~i~~~~~~-~~~~---~~~~~~~----~~~~~~~~spdg~~~~~~~~~-~~~~~i~~~~~~~~~~~~ 209 (269)
T d2hqsa1 144 TSDQA-----GRPQVYKVNIN-GGAP---QRITWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQV 209 (269)
T ss_dssp EECTT-----SSCEEEEEETT-SSCC---EECCCSS----SEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEEE
T ss_pred ccccc-----CCceEeeeecc-cccc---eeeeccc----ccccccccccccceeEEEeec-CCceeeeEeecccccceE
Confidence 87433 24579999987 4443 2222222 4456789999999 8888877 788899999998887655
Q ss_pred eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceE
Q 004816 337 IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID 401 (729)
Q Consensus 337 l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~ 401 (729)
+. .......|.|+| ||+.|+|++.+.+..+||+++++++..++|+.....+.
T Consensus 210 ~~-~~~~~~~p~~SP------------DG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~ 261 (269)
T d2hqsa1 210 LS-STFLDETPSLAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 261 (269)
T ss_dssp CC-CSSSCEEEEECT------------TSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEE
T ss_pred ee-cCccccceEECC------------CCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEE
Confidence 44 344445678887 99999999999999999999999999999998765543
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=9.1e-19 Score=174.93 Aligned_cols=210 Identities=15% Similarity=0.103 Sum_probs=148.7
Q ss_pred CCcEEEEeeccCCC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCC
Q 004816 456 SLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 534 (729)
Q Consensus 456 ~~~~~~~~~~~~dG-~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g 534 (729)
...+.+++.+. +| ..+.++++.|.+.+ +.+++|+|+++||+++..... .....+..+.+|+.|+.++|++...
T Consensus 11 ~~~~~~~~~s~-dg~~~~~~~v~~P~~~~----~~~~yPvi~~lhG~~~~~~~~-~~~~~~~~~~~~~~vV~v~~~~~~~ 84 (265)
T d2gzsa1 11 YHFSATSFDSV-DGTRHYRVWTAVPNTTA----PASGYPILYMLDGNAVMDRLD-DELLKQLSEKTPPVIVAVGYQTNLP 84 (265)
T ss_dssp EEEEEEEEECT-TSSCEEEEEEEEESSCC----CTTCEEEEEESSHHHHHHHCC-HHHHHHHTTSCCCEEEEEEESSSSS
T ss_pred ceeEEEEEEcC-CCCEEEEEEEEcCCCCC----CCCCceEEEEecCcchhhhHH-HHHHHHHHhcCCCeEEEecCCCCCc
Confidence 34678889988 76 57999999998843 468899999999974322111 1123345566899999999999887
Q ss_pred CchhHHHhhccCC-----------------Ccc-cHH--HHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCc
Q 004816 535 YGREFRERLLGRW-----------------GIV-DVN--DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDT 594 (729)
Q Consensus 535 ~g~~~~~~~~~~~-----------------~~~-~~~--D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~ 594 (729)
++...+......+ +.. ... ....++.++.++..+|+++++|+|+|+||++++.++.+++.
T Consensus 85 ~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~~~~ 164 (265)
T d2gzsa1 85 FDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSY 164 (265)
T ss_dssp CCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHHCSS
T ss_pred CcccccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHcCcc
Confidence 7655433321110 000 111 22335667777778899999999999999999998887788
Q ss_pred ceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCC--------CCCCChHHHHH
Q 004816 595 FKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLE--------DKVVPPDQARK 666 (729)
Q Consensus 595 ~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~--------D~~vp~~~~~~ 666 (729)
|.++++.+|...+.. ...+...++.........|+++.+|+. |..+++.++.+
T Consensus 165 f~~~~a~s~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~ 225 (265)
T d2gzsa1 165 FRSYYSASPSLGRGY-------------------DALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIHT 225 (265)
T ss_dssp CSEEEEESGGGSTTH-------------------HHHHHHHHTSCTTTTTTCEEEEEECCC-----------CHHHHHHH
T ss_pred cCEEEEECCcccccc-------------------hhhhhccccccccccCCCcEEEEcCCcccccccccccchhHHHHHH
Confidence 999999988764421 112222334444555667888888876 66788999999
Q ss_pred HHHHHHhCCCCEEEEEECCCCccc
Q 004816 667 IYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 667 ~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
++++|+++|+++++++|||++|+.
T Consensus 226 l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 226 TLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp HHHHHHHTTCCEEEEECTTCCHHH
T ss_pred HHHHHHHCCCCEEEEEcCCCCcch
Confidence 999999999999999999999973
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=4.2e-18 Score=172.22 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=169.2
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch---hhhHHHhhCCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~la~~G~~v~~~d~rGs~ 533 (729)
.++.+++.+...|..+...++.| .+++|+|+++||+++......|. ...+.+.+.|++|+.++..+..
T Consensus 8 ~v~~~~~~s~~~~r~~~~~v~~p---------~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 78 (288)
T d1sfra_ 8 PVEYLQVPSPSMGRDIKVQFQSG---------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSS 78 (288)
T ss_dssp CCEEEEEEETTTTEEEEEEEECC---------STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTC
T ss_pred EEEEEEEECCCCCcEEEEEEeCC---------CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCC
Confidence 35678888776788999888766 34689999999976544433332 2467778889999999987655
Q ss_pred CCchhHHHhhccCC---CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH
Q 004816 534 GYGREFRERLLGRW---GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM 609 (729)
Q Consensus 534 g~g~~~~~~~~~~~---~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~ 609 (729)
.++..+........ ...+..-+.+++.+|.++..+|++|++|+|+|+||++|+.++. +|++|+++++++|..+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~ 158 (288)
T d1sfra_ 79 FYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQ 158 (288)
T ss_dssp TTCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTS
T ss_pred CCccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCcccccc
Confidence 44432221111110 0111222466778888888899999999999999999999988 9999999999999887543
Q ss_pred Hhhhcch------hhhhhhhhhcC--ChhhhhhcCcccccCCC---CCCEEEEEeCCCCCCCh--------------HHH
Q 004816 610 LRAETHK------FESRYIDNLVG--SEKDYYEKSPINFVDKF---SCPIILFQGLEDKVVPP--------------DQA 664 (729)
Q Consensus 610 ~~~~~~~------~~~~~~~~~~~--~~~~~~~~sp~~~~~~i---~~PvL~i~G~~D~~vp~--------------~~~ 664 (729)
....... ..........+ +...+...+|...+.+. ..++++.+|..|..++. .++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~~ 238 (288)
T d1sfra_ 159 AMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSN 238 (288)
T ss_dssp TTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhcccccHhhhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHHHHHHH
Confidence 3211100 00001111111 23455667776665433 46789999999987663 578
Q ss_pred HHHHHHHHhCCCCEEEEEECCC-CcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 665 RKIYKALKENGLPVALVEYEGE-QHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 665 ~~~~~~l~~~g~~~~~~~~~~~-gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.++.++|+++|+++++.+++++ +|.+ ..+.+.+...+.|+.+.|+
T Consensus 239 ~~l~~~l~~~g~~~~~~~~~~~G~H~w---~~w~~~l~~~l~~l~~alg 284 (288)
T d1sfra_ 239 IKFQDAYNAGGGHNGVFDFPDSGTHSW---EYWGAQLNAMKPDLQRALG 284 (288)
T ss_dssp HHHHHHHHHTTCCSEEEECCSCCCSSH---HHHHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHCCCCeEEEEECCCCccCh---hHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999998865 5976 3456777788899999987
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.77 E-value=2.9e-18 Score=166.70 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=130.8
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.+.||++||.+++ ...|..+++.|+++||.|+++|+||.|...... ... .......+...++..+... +.+
T Consensus 11 ~~~vvliHG~~~~--~~~~~~l~~~L~~~G~~v~~~D~~G~G~s~~~~---~~~-~~~~~~~~~~~~~~~~~~~---~~~ 81 (242)
T d1tqha_ 11 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKGHGVPPEEL---VHT-GPDDWWQDVMNGYEFLKNK---GYE 81 (242)
T ss_dssp SCEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTTSSSCHHHH---TTC-CHHHHHHHHHHHHHHHHHH---TCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCCCccccccc---ccc-chhHHHHHHHHHHhhhhhc---ccC
Confidence 3568889998543 345778899999999999999999766443221 111 1111234455555555443 357
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh-hHHhhhcchhhhhhhh--------------hhcC----Ch--
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL-SMLRAETHKFESRYID--------------NLVG----SE-- 629 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~-~~~~~~~~~~~~~~~~--------------~~~~----~~-- 629 (729)
+++++|||+||.+++.++. +|......+........ .............+.. .... ..
T Consensus 82 ~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (242)
T d1tqha_ 82 KIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKA 161 (242)
T ss_dssp CEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHHH
T ss_pred ceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhccchhhc
Confidence 8999999999999999998 76554333322221111 1110000000000000 0000 00
Q ss_pred hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 630 KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 630 ~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
...........+..+++|+|+++|++|..+|++.++++++.++. ..+++++++++||........++..+.+.+||++
T Consensus 162 ~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~Fl~~ 239 (242)
T d1tqha_ 162 LQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIES--PVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLES 239 (242)
T ss_dssp HHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCCC--SSEEEEEETTCCSSGGGSTTHHHHHHHHHHHHHH
T ss_pred ccccccccccccceeccccceeecccCCccCHHHHHHHHHHcCC--CCcEEEEECCCCCcCccccCHHHHHHHHHHHHHh
Confidence 00011122345678899999999999999999999999887743 4679999999999866555677889999999986
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.77 E-value=1.4e-17 Score=168.50 Aligned_cols=218 Identities=14% Similarity=0.095 Sum_probs=139.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 546 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~ 546 (729)
+|.++++..+.++ ..|.||++||.+.+. ..| ..+++.|+++||.|+++|+||.|.+...... ..
T Consensus 8 g~~~i~y~~~G~~----------~~p~vvl~HG~~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~--~~- 72 (297)
T d1q0ra_ 8 GDVELWSDDFGDP----------ADPALLLVMGGNLSA--LGWPDEFARRLADGGLHVIRYDHRDTGRSTTRDFA--AH- 72 (297)
T ss_dssp TTEEEEEEEESCT----------TSCEEEEECCTTCCG--GGSCHHHHHHHHTTTCEEEEECCTTSTTSCCCCTT--TS-
T ss_pred CCEEEEEEEecCC----------CCCEEEEECCCCcCh--hHHHHHHHHHHHhCCCEEEEEeCCCCccccccccc--cc-
Confidence 6788887777432 247899999985443 333 4467888999999999999986654322111 11
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh------------
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE------------ 613 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~------------ 613 (729)
....+|+..-+..+++. ++.+++.++|||+||.+++.++. +|++++++|++++..........
T Consensus 73 --~~~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~ 148 (297)
T d1q0ra_ 73 --PYGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLD 148 (297)
T ss_dssp --CCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSS
T ss_pred --ccccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhhhhhhh
Confidence 12345554444444443 24578999999999999999998 99999999998765421110000
Q ss_pred -------------------cch----hhhhhh-h-hhcC-----Chhhh--------------------------hhcCc
Q 004816 614 -------------------THK----FESRYI-D-NLVG-----SEKDY--------------------------YEKSP 637 (729)
Q Consensus 614 -------------------~~~----~~~~~~-~-~~~~-----~~~~~--------------------------~~~sp 637 (729)
... ...... . .+.. ....+ ...+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (297)
T d1q0ra_ 149 GLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSR 228 (297)
T ss_dssp CSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGG
T ss_pred hhhhhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhhccccc
Confidence 000 000000 0 0000 00000 00112
Q ss_pred ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 638 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 638 ~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
...+++|++|+|+++|++|.++|++.++++.+.+. +.++++++++||.+. .+...++.+.+++|++.
T Consensus 229 ~~~l~~i~~Pvlvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~~l~~ 295 (297)
T d1q0ra_ 229 AAELREVTVPTLVIQAEHDPIAPAPHGKHLAGLIP----TARLAEIPGMGHALP-SSVHGPLAEVILAHTRS 295 (297)
T ss_dssp GGGGGGCCSCEEEEEETTCSSSCTTHHHHHHHTST----TEEEEEETTCCSSCC-GGGHHHHHHHHHHHHHH
T ss_pred hhhhhccCCceEEEEeCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCcch-hhCHHHHHHHHHHHHHh
Confidence 23467889999999999999999998888877664 569999999999764 45666777777777765
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.76 E-value=4.7e-18 Score=170.83 Aligned_cols=218 Identities=18% Similarity=0.211 Sum_probs=138.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+.+++ ..|+||++||+++... .|...+..++++||.|+++|+||.|.+.... ...+
T Consensus 10 ~g~~i~y~~~g~~~---------~~~~iv~lHG~~g~~~--~~~~~~~~~~~~~~~vi~~D~~G~G~S~~~~----~~~~ 74 (290)
T d1mtza_ 10 NGIYIYYKLCKAPE---------EKAKLMTMHGGPGMSH--DYLLSLRDMTKEGITVLFYDQFGCGRSEEPD----QSKF 74 (290)
T ss_dssp TTEEEEEEEECCSS---------CSEEEEEECCTTTCCS--GGGGGGGGGGGGTEEEEEECCTTSTTSCCCC----GGGC
T ss_pred CCEEEEEEEcCCCC---------CCCeEEEECCCCCchH--HHHHHHHHHHHCCCEEEEEeCCCCccccccc----cccc
Confidence 89999877765422 3478999999865433 3444556678889999999999876543210 0111
Q ss_pred Cc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcch---------
Q 004816 548 GI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHK--------- 616 (729)
Q Consensus 548 ~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~--------- 616 (729)
.. ..++|+.+.++.+.. .+++.++|||+||.+++.++. +|++++++++.+++............
T Consensus 75 ~~~~~~~~l~~ll~~l~~-----~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (290)
T d1mtza_ 75 TIDYGVEEAEALRSKLFG-----NEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKY 149 (290)
T ss_dssp SHHHHHHHHHHHHHHHHT-----TCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHH
T ss_pred cccchhhhhhhhhccccc-----ccccceecccccchhhhhhhhcChhhheeeeecccccCcccchhhhhhhhhhhhHHH
Confidence 11 124555555555432 368999999999999999988 99999999998876543211100000
Q ss_pred -----------------h---hhhhh-hhhcC----Chhh---------------------------hhhcCcccccCCC
Q 004816 617 -----------------F---ESRYI-DNLVG----SEKD---------------------------YYEKSPINFVDKF 644 (729)
Q Consensus 617 -----------------~---~~~~~-~~~~~----~~~~---------------------------~~~~sp~~~~~~i 644 (729)
+ ...+. ..... .++. ....+......++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 229 (290)
T d1mtza_ 150 RDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAI 229 (290)
T ss_dssp HHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGC
T ss_pred HHHHHHhhhhccccchhHHHHHHHHhhhhhcccccchHHHHHHHHHHhhhhhhhhhcchhHHhHhhhhhcccHHHHhhcc
Confidence 0 00000 00000 0000 0011122335667
Q ss_pred CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 645 ~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
++|+|+++|++|.++| +.+..+.+.++ ++++++++++||... .+...++.+.+.+||.+||
T Consensus 230 ~~P~l~i~G~~D~~~~-~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~FL~~h~ 290 (290)
T d1mtza_ 230 KIPTLITVGEYDEVTP-NVARVIHEKIA----GSELHVFRDCSHLTM-WEDREGYNKLLSDFILKHL 290 (290)
T ss_dssp CSCEEEEEETTCSSCH-HHHHHHHHHST----TCEEEEETTCCSCHH-HHSHHHHHHHHHHHHHTCC
T ss_pred cceEEEEEeCCCCCCH-HHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHHHhC
Confidence 8999999999998764 56777766664 458999999999753 3556788889999999875
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.76 E-value=1.9e-18 Score=170.47 Aligned_cols=226 Identities=15% Similarity=0.078 Sum_probs=149.4
Q ss_pred CCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCC----cEEEEecC
Q 004816 454 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDVNY 529 (729)
Q Consensus 454 ~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G----~~v~~~d~ 529 (729)
-..+++++.+.+...|.++.+++|.|.+.. .+++|+||++||+++.... .....++.+.++| +.++.++.
T Consensus 11 ~~~~~~~~~~~S~~lg~~~~~~v~~P~~~~-----~~~~Pvvv~lhG~~~~~~~-~~~~~l~~l~~~~~~~~~i~v~~~~ 84 (246)
T d3c8da2 11 PEIPAKEIIWKSERLKNSRRVWIFTTGDVT-----AEERPLAVLLDGEFWAQSM-PVWPVLTSLTHRQQLPPAVYVLIDA 84 (246)
T ss_dssp CSSCCEEEEEEETTTTEEEEEEEEEC----------CCCCEEEESSHHHHHHTS-CCHHHHHHHHHTTSSCSCEEEEECC
T ss_pred CCCCcEEEEEECCCCCCEEEEEEEECCCCC-----CCCCCEEEEeCCcchhccC-cHHHHHHHHHHhCCCCceEEeeccc
Confidence 345778899988656899999999998742 4679999999997543322 2333455666665 33444443
Q ss_pred CCCCCCchhHHHhhccCCCcc----cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 530 GGSTGYGREFRERLLGRWGIV----DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 530 rGs~g~g~~~~~~~~~~~~~~----~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
. .+.... ... ..+.. ..+++...++... ...+|+++++|+|+|+||++|+.++. ||++|+++++++|.
T Consensus 85 ~----~~~~~~-~~~-~~~~~~~~~~~~el~~~v~~~~-~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~ 157 (246)
T d3c8da2 85 I----DTTHRA-HEL-PCNADFWLAVQQELLPLVKVIA-PFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGS 157 (246)
T ss_dssp C----SHHHHH-HHS-SSCHHHHHHHHHTHHHHHHHHS-CCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCC
T ss_pred c----cccccc-ccc-CccHHHHHHHHHHhhhHHHHhc-ccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcc
Confidence 2 111111 111 11111 1223333332221 23468899999999999999999998 99999999999998
Q ss_pred cChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 605 ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 605 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
.++..... .....+.+..+.....+...|+++.+|..|..+ ..++++|+++|+++|.++++.+++
T Consensus 158 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~~~l~~~L~~~g~~~~~~~~~ 222 (246)
T d3c8da2 158 YWWPHRGG--------------QQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVD 222 (246)
T ss_dssp TTTTCTTS--------------SSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEES
T ss_pred cccccCCc--------------cchHHHHHHhhhhhhhccCCCeEEEecCCCcch-hHHHHHHHHHHHHCCCCEEEEEeC
Confidence 76543211 112333444556667777889999999999866 578899999999999999999999
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 685 GEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 685 ~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
| ||.+ ..+...+...+.||-+.|
T Consensus 223 G-gH~~---~~W~~~l~~~l~~l~~~~ 245 (246)
T d3c8da2 223 G-GHDA---LCWRGGLMQGLIDLWQPL 245 (246)
T ss_dssp C-CSCH---HHHHHHHHHHHHHHHGGG
T ss_pred C-CCCh---HHHHHHHHHHHHHHHHhh
Confidence 7 7965 355666666666665543
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.76 E-value=4.7e-18 Score=178.37 Aligned_cols=245 Identities=16% Similarity=0.118 Sum_probs=153.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc----hhhhHHHhhCCcEEEEecCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGGS 532 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~----~~~~~~la~~G~~v~~~d~rGs 532 (729)
..|...+.+. ||..|..+.+...... ....++.|+||++||.+.+...+.. ..++.+|+++||.|+++|+||.
T Consensus 26 ~~e~h~v~t~-DG~~l~~~ri~~~~~~--~~~~~~~~~vlllHG~~~~~~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~ 102 (377)
T d1k8qa_ 26 PAEEYEVVTE-DGYILGIDRIPYGRKN--SENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp CCEEEEEECT-TSEEEEEEEECSCSSC--CTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred CceEEEEEcC-CCCEEEEEEecCCCCC--CccCCCCCeEEEECCCccchhHHhhcCccchHHHHHHHCCCEEEEEcCCCC
Confidence 4577888888 9998877655322111 1124566899999998766544322 2367889999999999999987
Q ss_pred CCCchhHHHh-hc---cCCC--cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecc--
Q 004816 533 TGYGREFRER-LL---GRWG--IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYG-- 603 (729)
Q Consensus 533 ~g~g~~~~~~-~~---~~~~--~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~-- 603 (729)
|.....-... .. ..+. .....|+.++++++++... .+++.++||||||.+++.++. +|+.++.+++...
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g--~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~~~~~~~ 180 (377)
T d1k8qa_ 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTG--QDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALA 180 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHC--CSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEES
T ss_pred CCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHcC--CCCEEEEEecchHHHHHHHHHhhhhhhhhceeEeecc
Confidence 7654321100 00 0111 1235788999999888633 478999999999999999988 8877665554332
Q ss_pred -ccChh-------HHhhh------------------------------cchhhh---hhhhhhcC------Ch---hhh-
Q 004816 604 -VADLS-------MLRAE------------------------------THKFES---RYIDNLVG------SE---KDY- 632 (729)
Q Consensus 604 -~~d~~-------~~~~~------------------------------~~~~~~---~~~~~~~~------~~---~~~- 632 (729)
..... ..... ...... .......+ +. ..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (377)
T d1k8qa_ 181 PVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYL 260 (377)
T ss_dssp CCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHH
T ss_pred ccccccchhhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCCcccccHHHhhhhh
Confidence 11100 00000 000000 00000000 00 000
Q ss_pred ----------------------------------------hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHH
Q 004816 633 ----------------------------------------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 672 (729)
Q Consensus 633 ----------------------------------------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~ 672 (729)
....+...+.+|++|+|+++|++|.+++++.++++.+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~~~~~~~~l~~~lp 340 (377)
T d1k8qa_ 261 SHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLP 340 (377)
T ss_dssp TTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCT
T ss_pred hcccccchHHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCccCHHHHHHHHHHCC
Confidence 0011223467789999999999999999998888877665
Q ss_pred hCCCCEEEEEECCCCcc--cCCcccHHHHHHHHHHHHHH
Q 004816 673 ENGLPVALVEYEGEQHG--FRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 673 ~~g~~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~ 709 (729)
. .++++++++.||. +...+...+.+..|++||++
T Consensus 341 ~---~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 341 N---LIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp T---EEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred C---CeEEEEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 3 3578899999995 23445677889999999974
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.2e-17 Score=162.47 Aligned_cols=192 Identities=15% Similarity=0.038 Sum_probs=127.9
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCC------CCCchhHHHhhccCC-CcccHHHH-------
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS------TGYGREFRERLLGRW-GIVDVNDC------- 555 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs------~g~g~~~~~~~~~~~-~~~~~~D~------- 555 (729)
+..++||++||.+.. ...+......+...|+.++.++-+.. +..+..|........ ...+..++
T Consensus 19 ~~~~~VI~lHG~G~~--~~~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~~l 96 (229)
T d1fj2a_ 19 KATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENI 96 (229)
T ss_dssp CCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCC--HHHHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHHHH
Confidence 345789999996332 33455555666778999999874310 011112221111000 01112222
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhh
Q 004816 556 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYE 634 (729)
Q Consensus 556 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (729)
...++.+.+. .+|.+||+++|+|+||.+|+.++. ++++|++++++++.........
T Consensus 97 ~~li~~~~~~-~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~~---------------------- 153 (229)
T d1fj2a_ 97 KALIDQEVKN-GIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP---------------------- 153 (229)
T ss_dssp HHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC----------------------
T ss_pred HHHhhhhhhc-CCCccceeeeecccchHHHHHHHHhhccccCcccccccccccccccc----------------------
Confidence 2233333333 579999999999999999999887 9999999999988543211100
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHh--CCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 635 KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE--NGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 635 ~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~--~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
..+ ....+.++|+|++||++|.+||++.+++.++.|++ .+.++++++|++.||.+.. +.++.+.+||.++|.
T Consensus 154 ~~~-~~~~~~~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~~-----~~~~~~~~wL~~~Lp 227 (229)
T d1fj2a_ 154 QGP-IGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQ-----QEMMDVKQFIDKLLP 227 (229)
T ss_dssp SSC-CCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCCH-----HHHHHHHHHHHHHSC
T ss_pred ccc-cccccccCceeEEEcCCCCeeCHHHHHHHHHHHHhcCCCCceEEEEeCCCCCccCH-----HHHHHHHHHHHhHCc
Confidence 000 11123358999999999999999999999999988 4678999999999998642 456789999999984
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.74 E-value=5.4e-17 Score=160.78 Aligned_cols=217 Identities=14% Similarity=0.040 Sum_probs=140.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-----hhhHHHhhCC----cEEEEe
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-----LSIQYWTSRG----WAFVDV 527 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-----~~~~~la~~G----~~v~~~ 527 (729)
+.+.+++.+..+|..+.++++.|++.+ +++++|+|+++||+++........ .....+...+ +.+...
T Consensus 21 ~~~~~~~~S~~~g~~~~~~v~lP~~y~----~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T d1jjfa_ 21 QVVNISYFSTATNSTRPARVYLPPGYS----KDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTP 96 (255)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCC----TTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEE
T ss_pred EEEEEEEEecCCCCEEEEEEEeCCCCC----CCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeec
Confidence 467788887657999999999998843 467899999999986554332211 1222233222 334444
Q ss_pred cCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC--CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 528 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS--GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 528 d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
+.............. .....+..++.++.++ ..+|+++++++|+|+||++++.++. +|++|+++++.+|.
T Consensus 97 ~~~~~~~~~~~~~~~-------~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~ 169 (255)
T d1jjfa_ 97 NTNAAGPGIADGYEN-------FTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAA 169 (255)
T ss_dssp CCCCCCTTCSCHHHH-------HHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCC
T ss_pred ccccccccccccccc-------hHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccC
Confidence 433222111111100 0122233445555553 3478899999999999999999987 99999999999987
Q ss_pred cChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 605 ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 605 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
.+....... ..++.........|+++.||++|..++ .+++++++|+++|+++++.+++
T Consensus 170 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~~~~~~~~~ 227 (255)
T d1jjfa_ 170 PNTYPNERL--------------------FPDGGKAAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQ 227 (255)
T ss_dssp TTSCCHHHH--------------------CTTTTHHHHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCEEEEET
T ss_pred cCCcccccc--------------------cccHHHHhhccCCcceEEeCCCCCCch--HHHHHHHHHHHCCCCEEEEEEC
Confidence 654321110 001111122335789999999998865 5778999999999999999999
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHH
Q 004816 685 GEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 685 ~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+++|.+. .+...+...+.|.++
T Consensus 228 ~ggH~~~---~W~~~l~~fl~~~~~ 249 (255)
T d1jjfa_ 228 GGGHDFN---VWKPGLWNFLQMADE 249 (255)
T ss_dssp TCCSSHH---HHHHHHHHHHHHHHH
T ss_pred CCCcCHH---HHHHHHHHHHHHHHh
Confidence 9999762 344445444444444
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.74 E-value=1e-17 Score=160.50 Aligned_cols=182 Identities=13% Similarity=0.045 Sum_probs=128.5
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCC-----cccHHHHHHHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG-----IVDVNDCCSCATFLV 563 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~-----~~~~~D~~~~~~~l~ 563 (729)
.++.|+||++||.++ +...+..+++.++. ++.+++++.......+..|.......+. ..+.+++...++.+.
T Consensus 20 ~~~~p~vv~lHG~g~--~~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 96 (209)
T d3b5ea1 20 KESRECLFLLHGSGV--DETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAA 96 (209)
T ss_dssp SSCCCEEEEECCTTB--CTTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCC--CHHHHHHHHHHhcc-CcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHHH
Confidence 456799999999743 33456666777765 6888888764322222111111000000 112455667778888
Q ss_pred hCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccC
Q 004816 564 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 642 (729)
Q Consensus 564 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 642 (729)
++..+|.+||+|+|+|+||++++.++. +|++|+++++.+|..... +.....
T Consensus 97 ~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~----------------------------~~~~~~ 148 (209)
T d3b5ea1 97 KRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD----------------------------HVPATD 148 (209)
T ss_dssp HHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS----------------------------SCCCCC
T ss_pred HHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc----------------------------cccccc
Confidence 887889999999999999999999998 999999999999854321 001122
Q ss_pred CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 643 ~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
..++|++++||++|.+++ +.+.++.+.|++.|.+++++++++ ||.+.. ...+.+.+||.
T Consensus 149 ~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~~-----~~~~~~~~wl~ 207 (209)
T d3b5ea1 149 LAGIRTLIIAGAADETYG-PFVPALVTLLSRHGAEVDARIIPS-GHDIGD-----PDAAIVRQWLA 207 (209)
T ss_dssp CTTCEEEEEEETTCTTTG-GGHHHHHHHHHHTTCEEEEEEESC-CSCCCH-----HHHHHHHHHHH
T ss_pred cccchheeeeccCCCccC-HHHHHHHHHHHHCCCCeEEEEECC-CCCCCH-----HHHHHHHHHhC
Confidence 346899999999999987 567889999999999999999997 798852 33455667763
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.74 E-value=1.8e-17 Score=165.35 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=133.8
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 542 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~ 542 (729)
+.+. ||.++++..+. . .|.||++||.+.+ ...|...++.|+++||.|+++|+||.|.+....
T Consensus 3 ~~t~-dG~~l~y~~~G-----------~-g~~ivlvHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~--- 64 (274)
T d1a8qa_ 3 CTTR-DGVEIFYKDWG-----------Q-GRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVW--- 64 (274)
T ss_dssp EECT-TSCEEEEEEEC-----------S-SSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS---
T ss_pred EECc-CCCEEEEEEEC-----------C-CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCCCccccccc---
Confidence 4566 89888865542 1 2568889998543 455677788899999999999999866433211
Q ss_pred hccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChhH-----------
Q 004816 543 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSM----------- 609 (729)
Q Consensus 543 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~~----------- 609 (729)
. .....+....+..+++. +..+++.++|||+||.+++.++. +|+++++++++++......
T Consensus 65 --~---~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (274)
T d1a8qa_ 65 --D---GYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPD 137 (274)
T ss_dssp --S---CCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCH
T ss_pred --c---cccchhhHHHHHHHHHH--hhhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhhH
Confidence 1 11223333223222332 23468999999999999887665 6899999998876431100
Q ss_pred -----Hhh----hcchhhhhhhhhhcC-----------------------Ch-------hhhhhcCcccccCCCCCCEEE
Q 004816 610 -----LRA----ETHKFESRYIDNLVG-----------------------SE-------KDYYEKSPINFVDKFSCPIIL 650 (729)
Q Consensus 610 -----~~~----~~~~~~~~~~~~~~~-----------------------~~-------~~~~~~sp~~~~~~i~~PvL~ 650 (729)
+.. ....+.......... .. ..+...+....+.++++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvli 217 (274)
T d1a8qa_ 138 EVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLV 217 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEE
T ss_pred HHHHHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHhccceeee
Confidence 000 000000000000000 00 011122233447789999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC-CcccHHHHHHHHHHHHHH
Q 004816 651 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR-KAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 651 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~-~~~~~~~~~~~~~~fl~~ 709 (729)
++|++|.++|++...+..+.+- .++++++++++||... ..+...++.+.+.+||+|
T Consensus 218 i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 218 VHGDDDQVVPIDATGRKSAQII---PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp EEETTCSSSCGGGTHHHHHHHS---TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred eccCCCCCcCHHHHHHHHHHhC---CCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 9999999999876544333331 2458999999999753 235567788888899864
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.73 E-value=1.8e-17 Score=166.55 Aligned_cols=226 Identities=19% Similarity=0.121 Sum_probs=137.0
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc-cccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 460 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 460 ~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+..+++ ++..+++....+++ .|+||++||.+.+.. ...|...+..|++ ||.|+++|+||.|.+...
T Consensus 6 ~~~~~~--~~~~~h~~~~G~~~----------~p~ivllHG~~~~~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~ 72 (281)
T d1c4xa_ 6 EKRFPS--GTLASHALVAGDPQ----------SPAVVLLHGAGPGAHAASNWRPIIPDLAE-NFFVVAPDLIGFGQSEYP 72 (281)
T ss_dssp EEEECC--TTSCEEEEEESCTT----------SCEEEEECCCSTTCCHHHHHGGGHHHHHT-TSEEEEECCTTSTTSCCC
T ss_pred EEEEcc--CCEEEEEEEEecCC----------CCEEEEECCCCCCCcHHHHHHHHHHHHhC-CCEEEEEeCCCCcccccc
Confidence 334444 56778877765432 488999999754332 2345666777754 899999999976543221
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh--------hH
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL--------SM 609 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~--------~~ 609 (729)
. ..........++....+..++++. ..+++.++|||+||.+++.++. +|++++++|++++.... ..
T Consensus 73 ~---~~~~~~~~~~~~~~~~i~~~i~~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~ 147 (281)
T d1c4xa_ 73 E---TYPGHIMSWVGMRVEQILGLMNHF--GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELAR 147 (281)
T ss_dssp S---SCCSSHHHHHHHHHHHHHHHHHHH--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHH
T ss_pred c---cccccchhhHHHhhhhcccccccc--ccccceeccccccccccccccccccccccceEEeccccCccccchhHHHH
Confidence 0 000000011222222222222221 2468999999999999999998 99999999998875321 00
Q ss_pred Hhhhcc--hh--hhhhhhhhcC--------------------Ch-------hhh--------hhcCcccccCCCCCCEEE
Q 004816 610 LRAETH--KF--ESRYIDNLVG--------------------SE-------KDY--------YEKSPINFVDKFSCPIIL 650 (729)
Q Consensus 610 ~~~~~~--~~--~~~~~~~~~~--------------------~~-------~~~--------~~~sp~~~~~~i~~PvL~ 650 (729)
+..... .. ....+..... +. ..+ ....+...+.++++|+|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 227 (281)
T d1c4xa_ 148 LLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLV 227 (281)
T ss_dssp HHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEE
T ss_pred HHHhhhhcccchhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhhccceEE
Confidence 000000 00 0000000000 00 000 011222346788999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 651 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 651 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++|++|.++|++.++++.+.++ .++++++|++||... .+..+++.+.+.+||+
T Consensus 228 i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 228 FHGRQDRIVPLDTSLYLTKHLK----HAELVVLDRCGHWAQ-LERWDAMGPMLMEHFR 280 (281)
T ss_dssp EEETTCSSSCTHHHHHHHHHCS----SEEEEEESSCCSCHH-HHSHHHHHHHHHHHHH
T ss_pred EEeCCCCCcCHHHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHhC
Confidence 9999999999999888887764 568999999999653 3566788888889986
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=7.6e-18 Score=158.33 Aligned_cols=179 Identities=12% Similarity=0.067 Sum_probs=119.1
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcE
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 573 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 573 (729)
.||++||..++.....+..+++.|+++||.|+++|++|.+. ...+|....++.+.. ...+++
T Consensus 3 ~V~~vHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~p~~~~---------------~~~~~~~~~l~~~~~---~~~~~~ 64 (186)
T d1uxoa_ 3 QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQH---TLHENT 64 (186)
T ss_dssp EEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGG---GCCTTE
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHhCCCEEEEeccCCCCc---------------chHHHHHHHHHHHHh---ccCCCc
Confidence 59999998665545457778899999999999999987542 124455544444443 345789
Q ss_pred EEEEcChHHHHHHHHHh-CCCcc--eEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEE
Q 004816 574 CITGGSAGGYTTLAALA-FRDTF--KAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIIL 650 (729)
Q Consensus 574 ~i~G~S~GG~~a~~~~~-~~~~~--~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~ 650 (729)
.|+|||+||++++.++. ++... .++++..+.......... .... .....+.....++.+|+|+
T Consensus 65 ~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~------~~~~~~~~~~~~~~~p~lv 130 (186)
T d1uxoa_ 65 YLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQM--------LDEF------TQGSFDHQKIIESAKHRAV 130 (186)
T ss_dssp EEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCGG--------GGGG------TCSCCCHHHHHHHEEEEEE
T ss_pred EEEEechhhHHHHHHHHhCCccceeeEEeecccccccchhhhh--------hhhh------hcccccccccccCCCCEEE
Confidence 99999999999999988 66543 444444443322111000 0000 0001111122234679999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc--ccHHHHHHHHHHHHHH
Q 004816 651 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA--ENIKFTLEQQMVFFAR 709 (729)
Q Consensus 651 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~fl~~ 709 (729)
+||++|.+||+++++++++.+. +++++++++||..... ....+.++.+.+||.+
T Consensus 131 i~g~~D~~vp~~~~~~l~~~~~-----~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~~ 186 (186)
T d1uxoa_ 131 IASKDDQIVPFSFSKDLAQQID-----AALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFSK 186 (186)
T ss_dssp EEETTCSSSCHHHHHHHHHHTT-----CEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHHC
T ss_pred EecCCCCCCCHHHHHHHHHHcC-----CEEEEeCCCCCcCccccCcccHHHHHHHHHHHcC
Confidence 9999999999999999998873 4899999999965432 2345677778888753
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.73 E-value=8.1e-17 Score=160.40 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=139.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc-ccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 546 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~ 546 (729)
+|.++++..+ ++ .|.||++||.+..... ..|...+..|+ .||.|+++|+||.|.+....
T Consensus 11 ~G~~~~Y~~~-----------G~-G~pvvllHG~~~~~~~~~~~~~~~~~l~-~~~~vi~~Dl~G~G~S~~~~------- 70 (271)
T d1uk8a_ 11 AGVLTNYHDV-----------GE-GQPVILIHGSGPGVSAYANWRLTIPALS-KFYRVIAPDMVGFGFTDRPE------- 70 (271)
T ss_dssp TTEEEEEEEE-----------CC-SSEEEEECCCSTTCCHHHHHTTTHHHHT-TTSEEEEECCTTSTTSCCCT-------
T ss_pred CCEEEEEEEE-----------ee-CCeEEEECCCCCCccHHHHHHHHHHHHh-CCCEEEEEeCCCCCCccccc-------
Confidence 7999986544 12 2567889997544322 22444556654 69999999999866543211
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh---H----Hhhhcchhh
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---M----LRAETHKFE 618 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~---~----~~~~~~~~~ 618 (729)
......++....+..+.+.. +.+++.++|||+||.+++.++. +|++++++|+..+..... . .........
T Consensus 71 ~~~~~~~~~~~~~~~~~~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (271)
T d1uk8a_ 71 NYNYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIE 148 (271)
T ss_dssp TCCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHH
T ss_pred cccccccccchhhhhhhhhh--cCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhH
Confidence 11123566666677666653 4578999999999999999988 999999999887643210 0 000000000
Q ss_pred --hhhhh-------------------hhcC-C-hhhh-------------hhcCcccccCCCCCCEEEEEeCCCCCCChH
Q 004816 619 --SRYID-------------------NLVG-S-EKDY-------------YEKSPINFVDKFSCPIILFQGLEDKVVPPD 662 (729)
Q Consensus 619 --~~~~~-------------------~~~~-~-~~~~-------------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~ 662 (729)
..... .... . .+.+ ........+.++++|+|+++|++|..+|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~ 228 (271)
T d1uk8a_ 149 NMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLS 228 (271)
T ss_dssp HHHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHH
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeEEecCCCCCcCHH
Confidence 00000 0000 0 0000 111223446789999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 663 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 663 ~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.+..+.+.+. .+++++++++||... .+...++.+.+.+||++
T Consensus 229 ~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 229 SSLRLGELID----RAQLHVFGRCGHWTQ-IEQTDRFNRLVVEFFNE 270 (271)
T ss_dssp HHHHHHHHCT----TEEEEEESSCCSCHH-HHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC----CCEEEEECCCCCchH-HHCHHHHHHHHHHHHhc
Confidence 9888877764 569999999999653 45667888899999975
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.72 E-value=4.8e-17 Score=162.27 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=135.9
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH
Q 004816 462 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541 (729)
Q Consensus 462 ~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~ 541 (729)
++.+. ||.+|++..+.|++ .|+||++||.+.+ ...|...+..|+++||.|+++|+||.|.....
T Consensus 2 ~i~~~-dG~~l~y~~~G~~~----------~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~--- 65 (275)
T d1a88a_ 2 TVTTS-DGTNIFYKDWGPRD----------GLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP--- 65 (275)
T ss_dssp EEECT-TSCEEEEEEESCTT----------SCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC---
T ss_pred EEEec-CCCEEEEEEecCCC----------CCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEecccccccccc---
Confidence 35666 99999988887643 2578899998543 45577778899999999999999976543321
Q ss_pred hhccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcCh-HHHHHHHHHh-CCCcceEEEEeccccChh----------
Q 004816 542 RLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSA-GGYTTLAALA-FRDTFKAGASLYGVADLS---------- 608 (729)
Q Consensus 542 ~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~-GG~~a~~~~~-~~~~~~a~v~~~~~~d~~---------- 608 (729)
...+.. ...+|+.+.++.+ +.+++.++|||+ ||.+++.++. +|++++++|+.++.....
T Consensus 66 --~~~~~~~~~~~~~~~~l~~l------~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 137 (275)
T d1a88a_ 66 --STGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGL 137 (275)
T ss_dssp --SSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSB
T ss_pred --cccccccccccccccccccc------cccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhh
Confidence 111110 1144555555554 346788899887 5555566665 999999999987642110
Q ss_pred --HHhh----h----cchhhhhhhhhhc-C-----------------------Ch-------hhhhhcCcccccCCCCCC
Q 004816 609 --MLRA----E----THKFESRYIDNLV-G-----------------------SE-------KDYYEKSPINFVDKFSCP 647 (729)
Q Consensus 609 --~~~~----~----~~~~~~~~~~~~~-~-----------------------~~-------~~~~~~sp~~~~~~i~~P 647 (729)
.... . ...+......... . .. ..+...+....+.++++|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 217 (275)
T d1a88a_ 138 PLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVP 217 (275)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSC
T ss_pred hhhhhhhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHhhccc
Confidence 0000 0 0000000000000 0 00 001111222335678999
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+|+++|++|.++|.++..+....+- .++++++++++||.... +..+++.+.+.+|++
T Consensus 218 ~l~i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 218 VLVAHGTDDQVVPYADAAPKSAELL---ANATLKSYEGLPHGMLS-THPEVLNPDLLAFVK 274 (275)
T ss_dssp EEEEEETTCSSSCSTTTHHHHHHHS---TTEEEEEETTCCTTHHH-HCHHHHHHHHHHHHH
T ss_pred cceeecCCCCCcCHHHHHHHHHHhC---CCCEEEEECCCCCchHH-hCHHHHHHHHHHHHc
Confidence 9999999999999876554444332 25799999999997533 567788899999986
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.3e-16 Score=163.36 Aligned_cols=227 Identities=13% Similarity=0.075 Sum_probs=144.6
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
.....+... ||.++++..+ + ..|+||++||.+.+ ...|...++.|+++||.|+++|+||.|....
T Consensus 11 ~~~~~v~~~-~g~~i~y~~~---G---------~gp~vlllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~ 75 (322)
T d1zd3a2 11 MSHGYVTVK-PRVRLHFVEL---G---------SGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKGYGESSA 75 (322)
T ss_dssp SEEEEEEEE-TTEEEEEEEE---C---------CSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEEECTTSTTSCC
T ss_pred CceeEEEEC-CCCEEEEEEE---c---------CCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEecccccccccc
Confidence 345556666 8999986654 1 12789999998554 3456778899999999999999997654322
Q ss_pred hHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-------H
Q 004816 538 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-------M 609 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-------~ 609 (729)
. ... .....++....+..+++. ++.+++.++|||+||.+++.++. +|++++++|++++..... .
T Consensus 76 ~---~~~---~~~~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 147 (322)
T d1zd3a2 76 P---PEI---EEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLE 147 (322)
T ss_dssp C---SCG---GGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCCCSSSCHHH
T ss_pred c---ccc---ccccccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcccccccccccchhh
Confidence 1 000 112345555555555544 24578999999999999999998 999999999886532100 0
Q ss_pred Hhh------------hcc-------hhhhhhhhhhc---------------------C-----------Chh-------h
Q 004816 610 LRA------------ETH-------KFESRYIDNLV---------------------G-----------SEK-------D 631 (729)
Q Consensus 610 ~~~------------~~~-------~~~~~~~~~~~---------------------~-----------~~~-------~ 631 (729)
... ... ......+.... . ... .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (322)
T d1zd3a2 148 SIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQ 227 (322)
T ss_dssp HHHTCGGGHHHHHTTSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHHH
T ss_pred hhhccchhhhHHhhhccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHHHHHHHHHH
Confidence 000 000 00000000000 0 000 0
Q ss_pred ------------------hhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc
Q 004816 632 ------------------YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA 693 (729)
Q Consensus 632 ------------------~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~ 693 (729)
....++.....++++|+|+++|++|..++++..+++.+.+. ..++++++++||... .
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~ 302 (322)
T d1zd3a2 228 FKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIP----HLKRGHIEDCGHWTQ-M 302 (322)
T ss_dssp HHHHTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTCT----TCEEEEETTCCSCHH-H
T ss_pred HhhcccccccccccccccccccchhhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCchH-H
Confidence 00111122346789999999999999999987766655443 568999999999653 3
Q ss_pred ccHHHHHHHHHHHHHHHhC
Q 004816 694 ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 694 ~~~~~~~~~~~~fl~~~l~ 712 (729)
+...++.+.+.+||+++-+
T Consensus 303 e~p~~v~~~i~~FL~~~~~ 321 (322)
T d1zd3a2 303 DKPTEVNQILIKWLDSDAR 321 (322)
T ss_dssp HSHHHHHHHHHHHHHHHTC
T ss_pred hCHHHHHHHHHHHHhhcCC
Confidence 5567888899999998754
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.72 E-value=2e-17 Score=166.30 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=127.7
Q ss_pred CEEEEEcCCCCCCcccc-chhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~-~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
|+||++||.+.+...+. +......+.++||.|+++|+||.|.+...... ........+|+.++++.+ +.+
T Consensus 31 ~~ivllHG~~~~~~~~~~~~~~l~~~~~~g~~v~~~D~~G~G~S~~~~~~---~~~~~~~~~~i~~li~~l------~~~ 101 (283)
T d2rhwa1 31 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMD---EQRGLVNARAVKGLMDAL------DID 101 (283)
T ss_dssp SEEEEECCCSTTCCHHHHHTTTHHHHHHTTCEEEEECCTTSTTSCCCCCS---SCHHHHHHHHHHHHHHHH------TCC
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHHHHCCCEEEEEeCCCCccccccccc---ccccchhhhhcccccccc------ccc
Confidence 67889999755443321 12233456789999999999986643221100 000001134555555544 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH---------H---hh---hcc-hhhhhhhhhhc------C-
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM---------L---RA---ETH-KFESRYIDNLV------G- 627 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~---------~---~~---~~~-~~~~~~~~~~~------~- 627 (729)
++.++|||+||.+++.++. +|++++++|+.++..-... . .. ... ........... .
T Consensus 102 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (283)
T d2rhwa1 102 RAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITE 181 (283)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGCCH
T ss_pred ccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhcccccCcH
Confidence 8999999999999999988 9999999999886421000 0 00 000 00000000000 0
Q ss_pred ------------Chh------------hhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE
Q 004816 628 ------------SEK------------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 683 (729)
Q Consensus 628 ------------~~~------------~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 683 (729)
... .....+....+.++++|+|+++|++|.++|++.+.++.+.+. .++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~i 257 (283)
T d2rhwa1 182 ELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID----DARLHVF 257 (283)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS----SEEEEEE
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcCHHHHHHHHHhCC----CCEEEEE
Confidence 000 011123344567889999999999999999999998888764 5799999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+++||.+. .++..++.+.+.+||++
T Consensus 258 ~~~gH~~~-~e~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 258 SKCGHWAQ-WEHADEFNRLVIDFLRH 282 (283)
T ss_dssp SSCCSCHH-HHTHHHHHHHHHHHHHH
T ss_pred CCCCCchH-HhCHHHHHHHHHHHHhC
Confidence 99999653 35567888889999975
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.71 E-value=1.7e-16 Score=157.64 Aligned_cols=215 Identities=15% Similarity=0.117 Sum_probs=134.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc-cccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 546 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~ 546 (729)
||.++++... ++. |.||++||.+.... ...|...+..| ++||.|+++|+||.|.+... .
T Consensus 10 dg~~l~y~~~-----------G~g-~~vvllHG~~~~~~~~~~~~~~~~~l-~~~~~v~~~D~~G~G~S~~~-----~-- 69 (268)
T d1j1ia_ 10 GGVETRYLEA-----------GKG-QPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLGFGKTAKP-----D-- 69 (268)
T ss_dssp TTEEEEEEEE-----------CCS-SEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCC-----S--
T ss_pred CCEEEEEEEE-----------cCC-CeEEEECCCCCCccHHHHHHHHHHHH-hcCCEEEEEcccccccccCC-----c--
Confidence 8999985432 222 56889999754332 22355566666 45899999999986653321 1
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc--------ch-
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET--------HK- 616 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~--------~~- 616 (729)
.....++....+..+++.-.+ .+++.++|||+||.+++.++. +|++++++|+.++........... ..
T Consensus 70 -~~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (268)
T d1j1ia_ 70 -IEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTRE 147 (268)
T ss_dssp -SCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHH
T ss_pred -cccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhh
Confidence 112234444444444333222 257999999999999999988 999999999987642111000000 00
Q ss_pred hhhhhhhhhcC------------------Ch----------hhhh----hcCcccccCCCCCCEEEEEeCCCCCCChHHH
Q 004816 617 FESRYIDNLVG------------------SE----------KDYY----EKSPINFVDKFSCPIILFQGLEDKVVPPDQA 664 (729)
Q Consensus 617 ~~~~~~~~~~~------------------~~----------~~~~----~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~ 664 (729)
........... .. ..+. .......+.++++|+|+++|++|.++|++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~ 227 (268)
T d1j1ia_ 148 GMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETA 227 (268)
T ss_dssp HHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHH
T ss_pred hhHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEeCCCCCCCHHHH
Confidence 00000000000 00 0000 0111234678899999999999999999988
Q ss_pred HHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 665 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 665 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.++.+.+. ++++++++++||.+. .++..++.+.+.+||.+
T Consensus 228 ~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 228 YKFLDLID----DSWGYIIPHCGHWAM-IEHPEDFANATLSFLSL 267 (268)
T ss_dssp HHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHH
T ss_pred HHHHHhCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHcC
Confidence 88887764 579999999999754 35667888999999875
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.70 E-value=4.7e-17 Score=155.21 Aligned_cols=182 Identities=18% Similarity=0.102 Sum_probs=125.3
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCC-CchhHHHhhccCCCcccHHHHHHHHHHHHh---
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG-YGREFRERLLGRWGIVDVNDCCSCATFLVG--- 564 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g-~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~--- 564 (729)
.+..|+||++||++.. ...+...++.++ .++.|+.++.+...+ +...+. ....+..+.+|+...++.+..
T Consensus 14 ~~~~P~vi~lHG~G~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 87 (203)
T d2r8ba1 14 VAGAPLFVLLHGTGGD--ENQFFDFGARLL-PQATILSPVGDVSEHGAARFFR---RTGEGVYDMVDLERATGKMADFIK 87 (203)
T ss_dssp CTTSCEEEEECCTTCC--HHHHHHHHHHHS-TTSEEEEECCSEEETTEEESSC---BCGGGCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCeEEEecccccccccccccc---ccCccccchhHHHHHHHHHHHHHH
Confidence 4557999999997433 234445566655 467788876543221 111111 111122233444433333322
Q ss_pred --CCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCccccc
Q 004816 565 --SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFV 641 (729)
Q Consensus 565 --~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 641 (729)
...++.++++++|+|+||.+++.++. +|+.+.++++.++...... ....
T Consensus 88 ~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~----------------------------~~~~ 139 (203)
T d2r8ba1 88 ANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP----------------------------KISP 139 (203)
T ss_dssp HHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC----------------------------CCCC
T ss_pred HhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeecccccccc----------------------------cccc
Confidence 12357899999999999999999988 9999999999998653211 0112
Q ss_pred CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 642 DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 642 ~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
.....|++++||++|++||+++++++++.|++.|+++++++|++ ||.+.. +.++.+.+||.++
T Consensus 140 ~~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~~-----~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 140 AKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GHEIRS-----GEIDAVRGFLAAY 202 (203)
T ss_dssp CCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEEEEESS-CSSCCH-----HHHHHHHHHHGGG
T ss_pred ccccchhhccccCCCCcccHHHHHHHHHHHHHCCCCEEEEEECC-CCcCCH-----HHHHHHHHHHHhc
Confidence 23457999999999999999999999999999999999999987 798753 4567788999865
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.70 E-value=1.8e-16 Score=155.50 Aligned_cols=203 Identities=15% Similarity=0.098 Sum_probs=132.0
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+..... ......+....+..+...... ..+
T Consensus 3 ~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~Dl~G~G~S~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~ 72 (258)
T d1xkla_ 3 KHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIE-------ELRTLYDYTLPLMELMESLSA-DEK 72 (258)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTTSTTCCCCGG-------GCCSHHHHHHHHHHHHHTSCS-SSC
T ss_pred CcEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCC-------CCcchHHHHHHHhhhhhcccc-ccc
Confidence 568889998543 4567778899999999999999998765433211 112234444444444443222 368
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-----HHhh----hcch----------------------hhhh
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-----MLRA----ETHK----------------------FESR 620 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-----~~~~----~~~~----------------------~~~~ 620 (729)
+.++|||+||.+++.++. +|++++.+|+.++..... .... .... ....
T Consensus 73 ~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T d1xkla_ 73 VILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGPK 152 (258)
T ss_dssp EEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCHH
T ss_pred ccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccccccHH
Confidence 999999999999999988 999999999987643110 0000 0000 0000
Q ss_pred hhhhhc-C--C-----------------hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEE
Q 004816 621 YIDNLV-G--S-----------------EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 680 (729)
Q Consensus 621 ~~~~~~-~--~-----------------~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 680 (729)
...... . . ...+...........+++|+|+++|++|..+|++.++.+.+.+. ++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~ 228 (258)
T d1xkla_ 153 FLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIG----VTEA 228 (258)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHC----CSEE
T ss_pred HHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCCHHHHHHHHHHCC----CCEE
Confidence 000000 0 0 01111222233455677999999999999999999988888775 4589
Q ss_pred EEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 681 VEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 681 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
++++++||.. ..+..+++.+.+++|++++
T Consensus 229 ~~i~~~gH~~-~~e~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 229 IEIKGADHMA-MLCEPQKLCASLLEIAHKY 257 (258)
T ss_dssp EEETTCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred EEECCCCCch-HHhCHHHHHHHHHHHHHhc
Confidence 9999999974 3356678888899998875
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.70 E-value=6e-16 Score=158.12 Aligned_cols=222 Identities=15% Similarity=0.046 Sum_probs=135.2
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
++-.+... ||.++++..+.+++ .|.||++||++++...+. . ...+.+.||.|+++|.||.|.+...
T Consensus 12 ~~~~i~~~-dg~~i~y~~~G~~~----------g~pvvllHG~~g~~~~~~--~-~~~~l~~~~~Vi~~D~rG~G~S~~~ 77 (313)
T d1azwa_ 12 QQGSLKVD-DRHTLYFEQCGNPH----------GKPVVMLHGGPGGGCNDK--M-RRFHDPAKYRIVLFDQRGSGRSTPH 77 (313)
T ss_dssp EEEEEECS-SSCEEEEEEEECTT----------SEEEEEECSTTTTCCCGG--G-GGGSCTTTEEEEEECCTTSTTSBST
T ss_pred CCCEEEeC-CCcEEEEEEecCCC----------CCEEEEECCCCCCccchH--H-HhHHhhcCCEEEEEeccccCCCCcc
Confidence 66677776 89999877664322 255788999876543332 2 2334567999999999976543321
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh----
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE---- 613 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~---- 613 (729)
.. ......+++..-+..++++- +.+++.|+|||+||.+++.++. +|++++++++.++..........
T Consensus 78 ---~~---~~~~~~~~~~~dl~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~~~~~~~~~~~ 149 (313)
T d1azwa_ 78 ---AD---LVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFLLRRFELEWFYQE 149 (313)
T ss_dssp ---TC---CTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTS
T ss_pred ---cc---ccchhHHHHHHHHHHHHHhh--ccccceeEEecCCcHHHHHHHHHhhhceeeeeEeccccccccchhhhhhc
Confidence 11 11123455555555555542 3478999999999999999998 99999999998875432110000
Q ss_pred ----------------cch-----hhhhhhhhh------------------------cC-ChhhhhhcC-----------
Q 004816 614 ----------------THK-----FESRYIDNL------------------------VG-SEKDYYEKS----------- 636 (729)
Q Consensus 614 ----------------~~~-----~~~~~~~~~------------------------~~-~~~~~~~~s----------- 636 (729)
... ........+ .. .........
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (313)
T d1azwa_ 150 GASRLFPDAWEHYLNAIPPVERADLMSAFHRRLTSDDEATRLAAAKAWSVWEGATSFLHVDEDFVTGHEDAHFALAFARI 229 (313)
T ss_dssp SHHHHCHHHHHHHHHTSCGGGTTSHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHTCHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHhhhhhhhhhhhhhhhhhhcCccHHHHHHHHHhhhhccccccccccchhhhcccchhHHHHHHhHH
Confidence 000 000000000 00 000000000
Q ss_pred --------------c---ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHH
Q 004816 637 --------------P---INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFT 699 (729)
Q Consensus 637 --------------p---~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~ 699 (729)
+ ......+++|+|+++|++|.++|++.+.++.+.+.. .++++++++||....++...+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~l~~~~p~----a~~~~i~~aGH~~~ep~~~~~l 305 (313)
T d1azwa_ 230 ENHYFVNGGFFEVEDQLLRDAHRIADIPGVIVHGRYDVVCPLQSAWDLHKAWPK----AQLQISPASGHSAFEPENVDAL 305 (313)
T ss_dssp HHHHHHTGGGCSSTTHHHHTGGGGTTCCEEEEEETTCSSSCHHHHHHHHHHCTT----SEEEEETTCCSSTTSHHHHHHH
T ss_pred HHHHHhhccccccchhhhHhhhhcCCCCEEEEEECCCCCCCHHHHHHHHHHCCC----CEEEEECCCCCCCCCchHHHHH
Confidence 0 011345678999999999999999999999888753 4899999999976544444444
Q ss_pred HHHHHHH
Q 004816 700 LEQQMVF 706 (729)
Q Consensus 700 ~~~~~~f 706 (729)
.+.+.+|
T Consensus 306 i~a~~~f 312 (313)
T d1azwa_ 306 VRATDGF 312 (313)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444444
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.70 E-value=2.6e-16 Score=156.25 Aligned_cols=219 Identities=21% Similarity=0.277 Sum_probs=137.5
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH
Q 004816 462 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541 (729)
Q Consensus 462 ~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~ 541 (729)
+|.+. ||.++++..+. + .|.||++||.+.+ ...|...++.|+++||.|+++|+||.|.....
T Consensus 2 ~f~~~-dG~~l~y~~~G-----------~-g~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~--- 63 (271)
T d1va4a_ 2 TFVAK-DGTQIYFKDWG-----------S-GKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP--- 63 (271)
T ss_dssp EEECT-TSCEEEEEEES-----------S-SSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTTSTTSCCC---
T ss_pred EEEeE-CCeEEEEEEEc-----------C-CCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEecccccccccc---
Confidence 35555 89999855441 1 2457889998543 35577788899999999999999986643221
Q ss_pred hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHH-h-CCCcceEEEEeccccChhH----------
Q 004816 542 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVADLSM---------- 609 (729)
Q Consensus 542 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~-~-~~~~~~a~v~~~~~~d~~~---------- 609 (729)
......++....+..+... ++.+++.++|||+||.+++.++ . +|++++++++..+......
T Consensus 64 -----~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~ 136 (271)
T d1va4a_ 64 -----WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVP 136 (271)
T ss_dssp -----SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBC
T ss_pred -----ccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhh
Confidence 1112344444444444443 2457899999999998776554 4 8999999998876432100
Q ss_pred ---H---hhh----cchhhhhhhhhhcC----------------------Ch-------hhhhhcCcccccCCCCCCEEE
Q 004816 610 ---L---RAE----THKFESRYIDNLVG----------------------SE-------KDYYEKSPINFVDKFSCPIIL 650 (729)
Q Consensus 610 ---~---~~~----~~~~~~~~~~~~~~----------------------~~-------~~~~~~sp~~~~~~i~~PvL~ 650 (729)
. ... .......+...... .. ..+...+....+.++++|+|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~ 216 (271)
T d1va4a_ 137 LDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLV 216 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEE
T ss_pred hhHHHHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhhcccceee
Confidence 0 000 00000000000000 00 011112223346678999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 651 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 651 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
++|++|..+|++.+.++++.+.. .++++++|++||... .++.+++.+.+.+||+|
T Consensus 217 i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 217 IHGDGDQIVPFETTGKVAAELIK---GAELKVYKDAPHGFA-VTHAQQLNEDLLAFLKR 271 (271)
T ss_dssp EEETTCSSSCGGGTHHHHHHHST---TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHTC
T ss_pred cccCCCCCCCHHHHHHHHHHhCC---CCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 99999999999888887766532 458999999999753 24567788888888864
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.70 E-value=2.1e-16 Score=159.06 Aligned_cols=214 Identities=14% Similarity=0.139 Sum_probs=137.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+.+++ .|+||++||.+.+. ..|...++.|+ .||.|+++|+||.|.+... .
T Consensus 15 ~g~~i~y~~~G~~~----------~p~lvllHG~~~~~--~~~~~~~~~L~-~~~~vi~~d~~G~G~S~~~-----~--- 73 (291)
T d1bn7a_ 15 LGERMHYVDVGPRD----------GTPVLFLHGNPTSS--YLWRNIIPHVA-PSHRCIAPDLIGMGKSDKP-----D--- 73 (291)
T ss_dssp TTEEEEEEEESCSS----------SSCEEEECCTTCCG--GGGTTTHHHHT-TTSCEEEECCTTSTTSCCC-----S---
T ss_pred CCEEEEEEEeCCCC----------CCeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEEeCCCCcccccc-----c---
Confidence 79999977775432 25688899986543 45666777775 5999999999976654321 1
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh--------------
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA-------------- 612 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~-------------- 612 (729)
.....+++...+..+++. ++.+++.++|||+||.+++.++. +|++++++++..+.........
T Consensus 74 ~~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (291)
T d1bn7a_ 74 LDYFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRT 151 (291)
T ss_dssp CCCCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCHHHHHHHHHHTS
T ss_pred cccchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhhhhhhHHHHHhh
Confidence 112345555555555554 24578999999999999999887 9999999998765432110000
Q ss_pred ---------hcchhhhhhhhhhcC---Ch---hhhh-----------------hc--------------CcccccCCCCC
Q 004816 613 ---------ETHKFESRYIDNLVG---SE---KDYY-----------------EK--------------SPINFVDKFSC 646 (729)
Q Consensus 613 ---------~~~~~~~~~~~~~~~---~~---~~~~-----------------~~--------------sp~~~~~~i~~ 646 (729)
....+.......... .. ..+. .. .......++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 231 (291)
T d1bn7a_ 152 ADVGRELIIDQNAFIEGVLPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMNWLHQSPV 231 (291)
T ss_dssp TTHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCS
T ss_pred hhhHHHhhhhhhhhHHhhhhhhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhcCCC
Confidence 000000000000000 00 0000 00 00112456889
Q ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 647 PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
|+|+++|++|.++|++.+.++.+.+. .+++++++++||... .+..+++.+.+.+|++.
T Consensus 232 P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 232 PKLLFWGTPGVLIPPAEAARLAESLP----NCKTVDIGPGLHYLQ-EDNPDLIGSEIARWLPG 289 (291)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHST----TEEEEEEEEESSCGG-GTCHHHHHHHHHHHSGG
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHHh
Confidence 99999999999999999988887775 568999999999653 35566777888888754
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.69 E-value=6.3e-16 Score=153.78 Aligned_cols=218 Identities=17% Similarity=0.239 Sum_probs=136.7
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH
Q 004816 462 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541 (729)
Q Consensus 462 ~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~ 541 (729)
+|.+. ||.++++..+. .. |.||++||.+.+ ...|...+..|.++||.|+++|+||.|.+...
T Consensus 2 ~f~~~-dG~~i~y~~~G-----------~g-~pvvllHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~--- 63 (273)
T d1a8sa_ 2 TFTTR-DGTQIYYKDWG-----------SG-QPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRGHGRSSQP--- 63 (273)
T ss_dssp EEECT-TSCEEEEEEES-----------CS-SEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC---
T ss_pred EEEee-CCcEEEEEEEC-----------CC-CeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEechhcCccccc---
Confidence 56777 99999865541 12 457889998543 44577788899999999999999986654321
Q ss_pred hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHH-h-CCCcceEEEEeccccChhH----------
Q 004816 542 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVADLSM---------- 609 (729)
Q Consensus 542 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~-~-~~~~~~a~v~~~~~~d~~~---------- 609 (729)
. ...+.+++...+..+++. ++.++..++|||+||.+++.++ . +|++++++++..+......
T Consensus 64 --~---~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~ 136 (273)
T d1a8sa_ 64 --W---SGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLP 136 (273)
T ss_dssp --S---SCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBC
T ss_pred --c---ccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccch
Confidence 0 112344444444444443 2446788999999887665554 4 7999999998876431100
Q ss_pred ---Hh---hh----cchhhhhhhhhh-cC-----------------------Ch-------hhhhhcCcccccCCCCCCE
Q 004816 610 ---LR---AE----THKFESRYIDNL-VG-----------------------SE-------KDYYEKSPINFVDKFSCPI 648 (729)
Q Consensus 610 ---~~---~~----~~~~~~~~~~~~-~~-----------------------~~-------~~~~~~sp~~~~~~i~~Pv 648 (729)
+. .. ............ .. .. ..+...+....++++++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pv 216 (273)
T d1a8sa_ 137 MEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPT 216 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCE
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHhhccce
Confidence 00 00 000000000000 00 00 0112223334467889999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
|+++|++|..+|.+.+..+.+.+.. .++++++|++||... .++.+++.+.+.+||+
T Consensus 217 lii~g~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 217 LVVHGDADQVVPIEASGIASAALVK---GSTLKIYSGAPHGLT-DTHKDQLNADLLAFIK 272 (273)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHHST---TCEEEEETTCCSCHH-HHTHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCHHHHHHHHHHhCC---CCEEEEECCCCCchH-HhCHHHHHHHHHHHcC
Confidence 9999999999999877777666532 458999999999753 3566788888889885
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.69 E-value=1.4e-16 Score=162.53 Aligned_cols=220 Identities=13% Similarity=0.124 Sum_probs=138.4
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC
Q 004816 467 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 546 (729)
Q Consensus 467 ~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~ 546 (729)
.+|.++++.-+.+. +..|+||++||.+.+ ...|...+..|+++||.|+++|+||.|.+...-. .
T Consensus 31 ~~g~~~~y~~~G~~---------~~~p~llllHG~~~~--~~~~~~~~~~l~~~~~~vi~~Dl~G~G~S~~~~~---~-- 94 (310)
T d1b6ga_ 31 YPGLRAHYLDEGNS---------DAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVD---E-- 94 (310)
T ss_dssp CTTCEEEEEEEECT---------TCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTTSCEESC---G--
T ss_pred CCCEEEEEEEecCC---------CCCCEEEEECCCCCc--hHHHHHHHHHhhccCceEEEeeecCccccccccc---c--
Confidence 38899986655442 345899999998544 4556677888999999999999997665442110 0
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-----HHh---hhc---
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-----MLR---AET--- 614 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-----~~~---~~~--- 614 (729)
.....++....+..+++.. +.+++.++||||||.+++.++. +|++++++|+.++..-.. .+. ...
T Consensus 95 -~~~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (310)
T d1b6ga_ 95 -EDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADG 171 (310)
T ss_dssp -GGCCHHHHHHHHHHHHHHH--TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTT
T ss_pred -ccccccccccchhhhhhhc--cccccccccceecccccccchhhhccccceEEEEcCccCCCcccchhHHHHhhcchhh
Confidence 1123455555555555542 3468999999999999999988 999999999987643110 000 000
Q ss_pred -----------chh-hhhhhhhhcC--Ch---hhhhh------------------------------cCcccccCCCCCC
Q 004816 615 -----------HKF-ESRYIDNLVG--SE---KDYYE------------------------------KSPINFVDKFSCP 647 (729)
Q Consensus 615 -----------~~~-~~~~~~~~~~--~~---~~~~~------------------------------~sp~~~~~~i~~P 647 (729)
... ...+...... .. ..|.. .........+++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 251 (310)
T d1b6ga_ 172 FTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWNGQ 251 (310)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSE
T ss_pred hhhhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhhhhhHHhhcccCCC
Confidence 000 0000000000 00 00000 0000113467899
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+|+++|++|..++++....+.+.+... .++++++++||.. ..+..+...+.+.+|+++
T Consensus 252 ~l~i~G~~D~~~~~~~~~~~~~~~~~~---~~~~~i~~~GH~~-~~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 252 TFMAIGMKDKLLGPDVMYPMKALINGC---PEPLEIADAGHFV-QEFGEQVAREALKHFAET 309 (310)
T ss_dssp EEEEEETTCSSSSHHHHHHHHHHSTTC---CCCEEETTCCSCG-GGGHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCC---ccEEEECCCcCch-hhhCHHHHHHHHHHHHhC
Confidence 999999999999998888877766542 3678899999965 345556666777777763
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5e-15 Score=159.31 Aligned_cols=312 Identities=14% Similarity=0.148 Sum_probs=190.1
Q ss_pred ccCceEEcC-CCcEEEEeecC-----CCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECC
Q 004816 90 RLGGTAVDG-HGRLIWLESRP-----TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK 163 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~-----~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (729)
......+|| ++.+++..... .-.+ .+|.++.. ++..+.|.+..... ..+ .-..|+|+++.|+|+.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~--~~~i~d~~-~~~~~~l~~~~~~~-~~l---~~~~wSPDG~~iafv~-- 132 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTG--YYVLSKIP-HGDPQSLDPPEVSN-AKL---QYAGWGPKGQQLIFIF-- 132 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCS--EEEEEESS-SCCCEECCCTTCCS-CCC---SBCCBCSSTTCEEEEE--
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccc--cEEEEEcc-CCceeeccCccCCc-ccc---ceeeeccCCceEEEEe--
Confidence 345678999 88877764311 1123 34445554 23666665433111 111 1256888899999996
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCce--------------e-eecceecCCCCEEEEEEeccCCC-------------
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPLV--------------S-YADGIFDPRFNRYVTVREDRRQD------------- 215 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~--------------~-~~~~~~SPdG~~l~~~~~~~~~~------------- 215 (729)
+++||+.+..+ +...+||........ + ...+.|||||++|+|.+.+...-
T Consensus 133 ~~nl~~~~~~~--~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~ 210 (465)
T d1xfda1 133 ENNIYYCAHVG--KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY 210 (465)
T ss_dssp TTEEEEESSSS--SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred cceEEEEecCC--CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccccccc
Confidence 55799999988 777888865321100 0 12345999999999987543311
Q ss_pred ------------CCCcceEEEEEEcCCCceEEeeeCC------C-eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEE
Q 004816 216 ------------ALNSTTEIVAIALNGQNIQVLVSGS------D-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGY 276 (729)
Q Consensus 216 ------------~~~~~~~l~~~dl~~g~~~~lt~~~------~-~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d 276 (729)
.......|+++|++++..+.+.... + ....+.|+||++ +++...++.. +...|+++|
T Consensus 211 p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~-~~~~~~nR~q---~~~~i~~~d 286 (465)
T d1xfda1 211 PTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQ---NVSILTLCD 286 (465)
T ss_dssp CCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTS---CEEEEEEEE
T ss_pred ceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCe-EEEEEEcccc---ccceEEEEc
Confidence 0122457999999887654432211 1 234578999987 4444445543 456799999
Q ss_pred ecCCCCeeeeEEecCCCCCccc-cccCceeCCCCc-EEEEEe-cCCCceEEEEEEc-------CCCeEEEeeccCccccC
Q 004816 277 ISENGDVYKRVCVAGFDPTIVE-SPTEPKWSSKGE-LFFVTD-RKNGFWNLHKWIE-------SNNEVLAIYSLDAEFSR 346 (729)
Q Consensus 277 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~~wspDG~-l~~~~~-~~~g~~~l~~~d~-------~~g~~~~l~~~~~~~~~ 346 (729)
.. +|+... +..+....|.. ....|.|++||+ ++|+.. ...|+.+++.+.+ .++..+.||.++.++..
T Consensus 287 ~~-tg~~~~--~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~ 363 (465)
T d1xfda1 287 AT-TGVCTK--KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK 363 (465)
T ss_dssp TT-TCCEEE--EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred CC-CCcEEE--EEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEE
Confidence 98 787633 33322224433 235689999999 777532 2256667776643 34456778766555443
Q ss_pred C-cccccCcceeeeeecCCCCEEEEEEEEC--CeEEEEEEECCCCce-EeeccCC---cceEE--eeeeCCEEEEEEeCC
Q 004816 347 P-LWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGHSL-SLLDIPF---TDIDN--ITLGNDCLFVEGASG 417 (729)
Q Consensus 347 ~-~w~~~~~~~~~l~~~~~~~~l~~~s~~~--g~~~ly~~d~~~g~~-~~lt~~~---~~v~~--~~~~~~~~~~~~~~~ 417 (729)
. .|.. +++.|||++.+. +..|||+++++++.. +.|+... ..+.. ++++++.++..++++
T Consensus 364 i~~~d~------------~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~ 431 (465)
T d1xfda1 364 ILAYDE------------KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (465)
T ss_dssp EEEEET------------TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred EEEEcC------------CCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecC
Confidence 2 2322 778899998754 578999999998754 4455331 22222 367778888888888
Q ss_pred CCCceEEEEEcCCCc
Q 004816 418 VEPSSVAKVTLDDHK 432 (729)
Q Consensus 418 ~~~~~ly~~d~~~~~ 432 (729)
+.|. .++++..+++
T Consensus 432 ~~P~-~~~~~~~~~~ 445 (465)
T d1xfda1 432 GVPM-VTVHNTTDKK 445 (465)
T ss_dssp SSCC-EEEEETTTCC
T ss_pred CCCe-EEEEECCCCC
Confidence 7775 5556655554
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.68 E-value=4e-16 Score=155.63 Aligned_cols=200 Identities=15% Similarity=0.158 Sum_probs=120.8
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+... ...+.. ...+|+.++++.+ +.+
T Consensus 24 ~~ivllHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~-----~~~~~~~~~~~dl~~~l~~l------~~~ 90 (277)
T d1brta_ 24 QPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGFGQSSQP-----TTGYDYDTFAADLNTVLETL------DLQ 90 (277)
T ss_dssp SEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-----SSCCSHHHHHHHHHHHHHHH------TCC
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeCCCCCccccc-----ccccchhhhhhhhhhhhhcc------Ccc
Confidence 568899998544 35567778889999999999999976654321 111110 1134444444443 346
Q ss_pred cEEEEEcChHHHH-HHHHHh-CCCcceEEEEeccccChhH-----------------Hhhh----cchhhhhhhhhhcC-
Q 004816 572 RLCITGGSAGGYT-TLAALA-FRDTFKAGASLYGVADLSM-----------------LRAE----THKFESRYIDNLVG- 627 (729)
Q Consensus 572 ri~i~G~S~GG~~-a~~~~~-~~~~~~a~v~~~~~~d~~~-----------------~~~~----~~~~~~~~~~~~~~- 627 (729)
++.++|||+||.+ +..++. +|++++++|+.+++..... +... ...+..........
T Consensus 91 ~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (277)
T d1brta_ 91 DAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNL 170 (277)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTH
T ss_pred cccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchhhhhhcccccccc
Confidence 8999999999755 444555 8999999999876431110 0000 00000000000000
Q ss_pred -----------------------Ch-hhhh-----hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCE
Q 004816 628 -----------------------SE-KDYY-----EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 678 (729)
Q Consensus 628 -----------------------~~-~~~~-----~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~ 678 (729)
.. ..+. ..+....+.++++|+|+++|++|..++++...+..... ...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~---~~~~ 247 (277)
T d1brta_ 171 DENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKA---LPSA 247 (277)
T ss_dssp HHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHH---CTTS
T ss_pred chhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcCHHHHHHHHHHh---CCCC
Confidence 00 0000 01112235678899999999999999987654433332 2245
Q ss_pred EEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 679 ALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 679 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
++++++++||... .+...++.+.+.+||+|
T Consensus 248 ~~~~i~~~gH~~~-~e~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 248 EYVEVEGAPHGLL-WTHAEEVNTALLAFLAK 277 (277)
T ss_dssp EEEEETTCCTTHH-HHTHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 8999999999753 35667888899999874
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.68 E-value=1e-15 Score=153.99 Aligned_cols=222 Identities=13% Similarity=0.084 Sum_probs=134.8
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+..++.. +|.++++... + ..|+||++||.+.+ ...|...+..|++ +|.|+++|+||.|.....
T Consensus 9 ~~~~~~~--~~~~l~y~~~---G---------~gp~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~G~s~~~ 71 (293)
T d1ehya_ 9 KHYEVQL--PDVKIHYVRE---G---------AGPTLLLLHGWPGF--WWEWSKVIGPLAE-HYDVIVPDLRGFGDSEKP 71 (293)
T ss_dssp CEEEEEC--SSCEEEEEEE---E---------CSSEEEEECCSSCC--GGGGHHHHHHHHT-TSEEEEECCTTSTTSCCC
T ss_pred cceEEEE--CCEEEEEEEE---C---------CCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCcccCCccc
Confidence 4556666 6788885543 1 13679999998543 3556777787755 899999999976643321
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-H-------
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-M------- 609 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-~------- 609 (729)
.. ........+++...+..+++. ++.+++.++|||+||.+++.++. +|+++.++|+.++..... .
T Consensus 72 ~~----~~~~~~~~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 145 (293)
T d1ehya_ 72 DL----NDLSKYSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGH 145 (293)
T ss_dssp CT----TCGGGGCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC---------
T ss_pred cc----cccccccchhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeeccCccccchhhhhhh
Confidence 10 011112345555555555544 24478999999999999999998 999999999988753110 0
Q ss_pred -------Hhhh----------cchhhhhhhhhhc----C-----Ch--------------------hhhhhc-Cc-----
Q 004816 610 -------LRAE----------THKFESRYIDNLV----G-----SE--------------------KDYYEK-SP----- 637 (729)
Q Consensus 610 -------~~~~----------~~~~~~~~~~~~~----~-----~~--------------------~~~~~~-sp----- 637 (729)
.... .......++.... . .. ..|... .+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (293)
T d1ehya_ 146 VHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALW 225 (293)
T ss_dssp --CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCC
T ss_pred hhhhhhhhhhccchhhhhhccchhHHHHHHHHhhhhcccccccccHHHHHhhhhccccchhhhhhhhhhhhccccchhhh
Confidence 0000 0000000000000 0 00 000000 00
Q ss_pred -ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 638 -INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 638 -~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
......+++|+|+++|++|..+|++...++.+.+. .++++++++++||... .+..+++.+.|.+||
T Consensus 226 ~~~~~~~~~~Pvlii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~Pe~~~~~I~~Ff 292 (293)
T d1ehya_ 226 TDLDHTMSDLPVTMIWGLGDTCVPYAPLIEFVPKYY---SNYTMETIEDCGHFLM-VEKPEIAIDRIKTAF 292 (293)
T ss_dssp CTGGGSCBCSCEEEEEECCSSCCTTHHHHHHHHHHB---SSEEEEEETTCCSCHH-HHCHHHHHHHHHHHC
T ss_pred hhhhhhccCCceEEEEeCCCCCcCHHHHHHHHHHhC---CCCEEEEECCCCCchH-HHCHHHHHHHHHHhh
Confidence 01123567899999999999999987766655542 3689999999999643 345566777777776
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.67 E-value=8.4e-16 Score=148.05 Aligned_cols=190 Identities=17% Similarity=0.151 Sum_probs=123.1
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhC--CcEEEEecCCC-----CCCC-chhHHHhhccC-CCcccHHHHHHH--
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGG-----STGY-GREFRERLLGR-WGIVDVNDCCSC-- 558 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~--G~~v~~~d~rG-----s~g~-g~~~~~~~~~~-~~~~~~~D~~~~-- 558 (729)
...|+||++||.. .....+....+.+... ++.++.++-+. .+++ +..|....... ....+.+++...
T Consensus 12 ~~~~~Vi~lHG~G--~~~~~~~~~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (218)
T d1auoa_ 12 PADACVIWLHGLG--ADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAK 89 (218)
T ss_dssp CCSEEEEEECCTT--CCTTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHH
T ss_pred CCCeEEEEEcCCC--CChhhHHHHHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHHH
Confidence 3457999999973 3344566666777654 56666655321 0111 11222111111 111223333332
Q ss_pred -HHHHH---hCCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhh
Q 004816 559 -ATFLV---GSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDY 632 (729)
Q Consensus 559 -~~~l~---~~~~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (729)
++.++ .+..+|.+|++++|+|+||++++.++. .+..+.++++.++....... ... ..
T Consensus 90 ~v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~~-------------~~~-~~--- 152 (218)
T d1auoa_ 90 MVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGD-------------ELE-LS--- 152 (218)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCT-------------TCC-CC---
T ss_pred HHHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccccc-------------ccc-cc---
Confidence 23222 234579999999999999999988764 56689999999885421100 000 00
Q ss_pred hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 633 YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 633 ~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
....++|+|++||++|.+||++.++++++.|+++|.++++++|+ .+|.+. .+.++.+.+||.+.|+
T Consensus 153 --------~~~~~~pvl~~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~-----~~~~~~i~~wl~~~lg 218 (218)
T d1auoa_ 153 --------ASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEIHDIGAWLAARLG 218 (218)
T ss_dssp --------HHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHHHHHHHHHHHHHC
T ss_pred --------hhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCCEEEEEEC-CCCccC-----HHHHHHHHHHHHHhcC
Confidence 01125799999999999999999999999999999999999997 589764 3557889999999875
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.66 E-value=5.3e-16 Score=152.24 Aligned_cols=201 Identities=13% Similarity=0.058 Sum_probs=126.3
Q ss_pred EEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEE
Q 004816 495 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 574 (729)
Q Consensus 495 vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~ 574 (729)
.|++||.+.+ ...|...+..|+++||.|+++|+||.|.+..... . ....++..+.+..++.+. ...+++.
T Consensus 5 ~vliHG~~~~--~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~----~---~~~~~~~~~~l~~~~~~~-~~~~~~~ 74 (256)
T d3c70a1 5 FVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAASGVDPRQIE----E---IGSFDEYSEPLLTFLEAL-PPGEKVI 74 (256)
T ss_dssp EEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCGG----G---CCSHHHHTHHHHHHHHHS-CTTCCEE
T ss_pred EEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCCCC----C---CCCHHHHHHHhhhhhhhh-cccccee
Confidence 5889998544 4567778899999999999999998765443211 1 122444444444333321 2347899
Q ss_pred EEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH-----Hhhh----cc--------------------hhhhhhhhh
Q 004816 575 ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-----LRAE----TH--------------------KFESRYIDN 624 (729)
Q Consensus 575 i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~-----~~~~----~~--------------------~~~~~~~~~ 624 (729)
++|||+||.+++.++. +|++++++|+.++...... .... .. .........
T Consensus 75 lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
T d3c70a1 75 LVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRE 154 (256)
T ss_dssp EEEETTHHHHHHHHHHHHGGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHHHH
T ss_pred ecccchHHHHHHHHhhcCchhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhhhhhhh
Confidence 9999999999999988 9999999999876431110 0000 00 000000000
Q ss_pred -hcC-------------------ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 625 -LVG-------------------SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 625 -~~~-------------------~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
... ................+++|+|+++|++|..+|++...++.+.+. .+++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~ 230 (256)
T d3c70a1 155 NLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYK----PDKVYKVE 230 (256)
T ss_dssp HTSTTSCHHHHHHHHHHCCCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSC----CSEEEECC
T ss_pred hhhhhcchhhHHHhhhhhhhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCCHHHHHHHHHHCC----CCEEEEEC
Confidence 000 000111111222344467899999999999999988887776653 45899999
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 685 GEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 685 ~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
++||... -+..+++.+.+.+|++++
T Consensus 231 ~agH~~~-~e~P~~~~~~l~~~~~~~ 255 (256)
T d3c70a1 231 GGDHKLQ-LTKTKEIAEILQEVADTY 255 (256)
T ss_dssp SCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred CCCCchH-HhCHHHHHHHHHHHHHhc
Confidence 9999643 345567777777777664
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=2.3e-16 Score=155.77 Aligned_cols=196 Identities=13% Similarity=0.084 Sum_probs=124.1
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
..|.||++||.+.+ ...|...+..|+ .||.|+++|+||.|.+. .....++.|+. +.+... ..
T Consensus 10 g~~~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~---------~~~~~~~~d~~---~~~~~~---~~ 71 (256)
T d1m33a_ 10 GNVHLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPGFGRSR---------GFGALSLADMA---EAVLQQ---AP 71 (256)
T ss_dssp CSSEEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTTSTTCC---------SCCCCCHHHHH---HHHHTT---SC
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEeCCCCCCcc---------ccccccccccc---cccccc---cc
Confidence 34678889998543 345677778876 58999999999765432 12223345544 333333 24
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh--H------------Hhhhcc----hhhhhhhhh-hcC---
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--M------------LRAETH----KFESRYIDN-LVG--- 627 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~--~------------~~~~~~----~~~~~~~~~-~~~--- 627 (729)
+++.++|||+||.+++.++. +|++++++++..+..... . +..... .....+... ...
T Consensus 72 ~~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (256)
T d1m33a_ 72 DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTET 151 (256)
T ss_dssp SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTT
T ss_pred cceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccc
Confidence 78999999999999999988 999999988876432110 0 000000 000000000 000
Q ss_pred ------------------Ch-------hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 628 ------------------SE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 628 ------------------~~-------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
.. ..+...+....++++++|+|+++|++|.++|++.+..+.+.+. ++++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~~~l~~~~~----~~~~~~ 227 (256)
T d1m33a_ 152 ARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYI 227 (256)
T ss_dssp HHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTCT----TCEEEE
T ss_pred hhhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCCccccccccCCCCCHHHHHHHHHHCC----CCEEEE
Confidence 00 1111223334567889999999999999999987776655543 458999
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
++++||.. ..++.+++.+.+.+|+++
T Consensus 228 i~~~gH~~-~~e~p~~~~~~l~~fl~~ 253 (256)
T d1m33a_ 228 FAKAAHAP-FISHPAEFCHLLVALKQR 253 (256)
T ss_dssp ETTCCSCH-HHHSHHHHHHHHHHHHTT
T ss_pred ECCCCCch-HHHCHHHHHHHHHHHHHH
Confidence 99999964 335567788888888765
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=3e-15 Score=148.89 Aligned_cols=232 Identities=12% Similarity=0.104 Sum_probs=150.7
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch---hhhHHHhhCCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~la~~G~~v~~~d~rGs~ 533 (729)
+.|.++++++..|..+...++.|. .|+|+++||..++.....|. ...+....+++.|+.+|-.. .
T Consensus 3 ~~e~~~v~s~~~~r~~~~~v~~~~-----------~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~~-~ 70 (267)
T d1r88a_ 3 PYENLMVPSPSMGRDIPVAFLAGG-----------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGA-Y 70 (267)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCS-----------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCT-T
T ss_pred ceEEEEEecccCCceeeEEEECCC-----------CCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCCC-C
Confidence 568889988767888998887542 38999999964443332332 25577788899999998421 2
Q ss_pred CCchhHHHhhccCCCcccHHHHH--HHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH
Q 004816 534 GYGREFRERLLGRWGIVDVNDCC--SCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 610 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~ 610 (729)
.+...+... +....++.. +++.++.++..+|++|++|.|+||||++|+.++. +|++|+++++.+|..++...
T Consensus 71 ~~y~~~~~~-----~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~ 145 (267)
T d1r88a_ 71 SMYTNWEQD-----GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNT 145 (267)
T ss_dssp STTSBCSSC-----TTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSH
T ss_pred cCCcccccc-----ccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCc
Confidence 222222111 111233332 3567777777889999999999999999999998 99999999999998875432
Q ss_pred hhhcchh--hhh----hhhhhcC--ChhhhhhcCcccccCCC---CCCEEEEEeCCCCCCCh-----------HHHHHHH
Q 004816 611 RAETHKF--ESR----YIDNLVG--SEKDYYEKSPINFVDKF---SCPIILFQGLEDKVVPP-----------DQARKIY 668 (729)
Q Consensus 611 ~~~~~~~--~~~----~~~~~~~--~~~~~~~~sp~~~~~~i---~~PvL~i~G~~D~~vp~-----------~~~~~~~ 668 (729)
....... ... .....++ +...+.+.+|...++++ ..++++.+|.+|..+.. .+..++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
T d1r88a_ 146 TTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFY 225 (267)
T ss_dssp HHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHH
T ss_pred cchhhhhhHHhhhcCCcHhhccCCcchHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhhhHHHHH
Confidence 2111000 000 0111122 23455667787666543 36788889999876543 3466788
Q ss_pred HHHHhCC-CCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 669 KALKENG-LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 669 ~~l~~~g-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++|++.+ .++++...++++|.+ ..+...+..++..+.
T Consensus 226 ~~l~~~~g~~~~~~~~~~G~H~W---~~W~~~L~~~~p~~~ 263 (267)
T d1r88a_ 226 NQYRSVGGHNGHFDFPASGDNGW---GSWAPQLGAMSGDIV 263 (267)
T ss_dssp HHHHHTTCCSEEEECCSSCCSSH---HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcEEEEEcCCCeECh---HHHHHHHHHHHHHHH
Confidence 8888764 678888888899975 244555555544443
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.64 E-value=7.5e-15 Score=148.29 Aligned_cols=223 Identities=16% Similarity=0.075 Sum_probs=135.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+.-.+.+. ||.+|++..+.+++ .|.||++||++++.. .|...... .++||.|+++|.||.|.+...
T Consensus 12 ~~~~v~~~-dG~~i~y~~~G~~~----------g~pvvllHG~~~~~~--~w~~~~~~-l~~~~~vi~~D~rG~G~S~~~ 77 (313)
T d1wm1a_ 12 DSGWLDTG-DGHRIYWELSGNPN----------GKPAVFIHGGPGGGI--SPHHRQLF-DPERYKVLLFDQRGCGRSRPH 77 (313)
T ss_dssp EEEEEECS-SSCEEEEEEEECTT----------SEEEEEECCTTTCCC--CGGGGGGS-CTTTEEEEEECCTTSTTCBST
T ss_pred cCCEEEeC-CCcEEEEEEecCCC----------CCeEEEECCCCCccc--chHHHHHH-hhcCCEEEEEeCCCccccccc
Confidence 45557776 89999977775432 256888999876543 34444444 456999999999986654321
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh----
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE---- 613 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~---- 613 (729)
... ......+....+..+... .+..++.++|||+||.+++.++. +|++++..+...+..........
T Consensus 78 ---~~~---~~~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~ 149 (313)
T d1wm1a_ 78 ---ASL---DNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQD 149 (313)
T ss_dssp ---TCC---TTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTS
T ss_pred ---ccc---cccchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeeccccccccccccccccc
Confidence 111 112234444444444444 24578999999999999999988 99999999988764422110000
Q ss_pred ----------------cch------hhhhh-------------------hhh-----hcCChhh-------h--------
Q 004816 614 ----------------THK------FESRY-------------------IDN-----LVGSEKD-------Y-------- 632 (729)
Q Consensus 614 ----------------~~~------~~~~~-------------------~~~-----~~~~~~~-------~-------- 632 (729)
... ..... ... ....... +
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (313)
T d1wm1a_ 150 GASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFARIE 229 (313)
T ss_dssp SGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhHHhhhhhhh
Confidence 000 00000 000 0000000 0
Q ss_pred ---hhc---------CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHH
Q 004816 633 ---YEK---------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTL 700 (729)
Q Consensus 633 ---~~~---------sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~ 700 (729)
... ........+++|+|+++|++|.++|++.++++.+.+. .+++++++++||.+..+ +..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~p~~~~~~l~~~~p----~a~~~~i~~aGH~~~eP----~~~ 301 (313)
T d1wm1a_ 230 NHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWP----EAELHIVEGAGHSYDEP----GIL 301 (313)
T ss_dssp HHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHCT----TSEEEEETTCCSSTTSH----HHH
T ss_pred hhhhhhhcccccchhhhhhhhhhCCCCEEEEEECCCCccCHHHHHHHHHHCC----CCEEEEECCCCCCcCCc----hHH
Confidence 000 0011234478999999999999999999999988875 34899999999975433 444
Q ss_pred HHHHHHHHHHh
Q 004816 701 EQQMVFFARVV 711 (729)
Q Consensus 701 ~~~~~fl~~~l 711 (729)
+.+++.++++.
T Consensus 302 ~~lv~a~~~f~ 312 (313)
T d1wm1a_ 302 HQLMIATDRFA 312 (313)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 45666666543
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.63 E-value=1.4e-15 Score=151.90 Aligned_cols=200 Identities=19% Similarity=0.230 Sum_probs=119.5
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+.+ ...|...+..+.++||.|+++|+||.|.+... ... ...+++...+..+++. ++.++
T Consensus 24 ~~illlHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~-----~~~---~~~~~~~~di~~~i~~--l~~~~ 91 (279)
T d1hkha_ 24 QPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRGFGGSSKV-----NTG---YDYDTFAADLHTVLET--LDLRD 91 (279)
T ss_dssp EEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTSTTSCCC-----SSC---CSHHHHHHHHHHHHHH--HTCCS
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEechhhCCcccc-----ccc---cchhhhhhhhhhhhhh--cCcCc
Confidence 668899998543 45567778888899999999999987654321 111 2234433333333333 23468
Q ss_pred EEEEEcChHHH-HHHHHHh-CCCcceEEEEeccccChhH------------Hhhh--------cchhhhhhhhh------
Q 004816 573 LCITGGSAGGY-TTLAALA-FRDTFKAGASLYGVADLSM------------LRAE--------THKFESRYIDN------ 624 (729)
Q Consensus 573 i~i~G~S~GG~-~a~~~~~-~~~~~~a~v~~~~~~d~~~------------~~~~--------~~~~~~~~~~~------ 624 (729)
+.++|||+||. ++..++. +|+++++++++++...... .... .......+...
T Consensus 92 ~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (279)
T d1hkha_ 92 VVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDE 171 (279)
T ss_dssp EEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHH
T ss_pred cccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccch
Confidence 99999999975 4555555 7999999999876431100 0000 00000000000
Q ss_pred hcC---Ch----------------hhhhh--------cCcccccCCCCCCEEEEEeCCCCCCChHH-HHHHHHHHHhCCC
Q 004816 625 LVG---SE----------------KDYYE--------KSPINFVDKFSCPIILFQGLEDKVVPPDQ-ARKIYKALKENGL 676 (729)
Q Consensus 625 ~~~---~~----------------~~~~~--------~sp~~~~~~i~~PvL~i~G~~D~~vp~~~-~~~~~~~l~~~g~ 676 (729)
... .. ..+.. .+.+..+..+++|+|+++|++|.++|.+. .+.+.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~p---- 247 (279)
T d1hkha_ 172 NLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVP---- 247 (279)
T ss_dssp HBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHCT----
T ss_pred hhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccCHHHHHHHHHHhCC----
Confidence 000 00 00000 00112245568999999999999998754 444544443
Q ss_pred CEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 677 PVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 677 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.++++++|++||... .+...+..+.+.+||+|
T Consensus 248 ~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 248 EADYVEVEGAPHGLL-WTHADEVNAALKTFLAK 279 (279)
T ss_dssp TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 458999999999753 35667888889999864
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.62 E-value=5.4e-15 Score=147.85 Aligned_cols=214 Identities=10% Similarity=0.061 Sum_probs=133.0
Q ss_pred cceecCC--CCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 195 DGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 195 ~~~~SPd--G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
++.+||| |++|+|+++ .+||++|+++|+.++||.+.+....|+|||||++|||+....... ...+|
T Consensus 3 ~~~~sPdi~G~~v~f~~~----------~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~--~~~~i 70 (281)
T d1k32a2 3 NLLLNPDIHGDRIIFVCC----------DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSL--NTADL 70 (281)
T ss_dssp CCCEEEEEETTEEEEEET----------TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTC--CEEEE
T ss_pred CcccCCCCCCCEEEEEeC----------CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCC--CceEE
Confidence 3467999 999999975 469999999999999999988889999999999999998544321 34679
Q ss_pred EEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCC--CceEEEEEEcCCCeEEEeeccCccccCCcc
Q 004816 273 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN--GFWNLHKWIESNNEVLAIYSLDAEFSRPLW 349 (729)
Q Consensus 273 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~--g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 349 (729)
|++++. +|+..++................+.|+|||+ |+|...... ....++.++.+++..+...... ..+.|
T Consensus 71 ~~~~~~-~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 146 (281)
T d1k32a2 71 YFYNGE-NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP---ATHIL 146 (281)
T ss_dssp EEEETT-TTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS---CSEEE
T ss_pred EEEEec-CCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCc---cceee
Confidence 999988 6765332211110000002335678999999 777665411 2345777888877766654221 12233
Q ss_pred cccCcceeeeeecCCCCEEEEEEEEC---------CeEEEEEEECCCCceEeeccCCcceEEeeeeCCEEEEEEeCCCCC
Q 004816 350 VFGINSYEIIQSHGEKNLIACSYRQN---------GRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEP 420 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s~~~---------g~~~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~ 420 (729)
.+ +++.+++..... +...........+....++............++.+ ++.......
T Consensus 147 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 213 (281)
T d1k32a2 147 FA------------DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRI-YFITDIDGF 213 (281)
T ss_dssp EE------------TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEE-EEEECTTSS
T ss_pred ec------------CCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecccc-ceecccccc
Confidence 32 444444433221 11112222233444445544433333333334444 444556667
Q ss_pred ceEEEEEcCCCcceeee
Q 004816 421 SSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 421 ~~ly~~d~~~~~~~~lt 437 (729)
.+||++++++++.++||
T Consensus 214 ~~l~~~d~~g~~~~~lt 230 (281)
T d1k32a2 214 GQIYSTDLDGKDLRKHT 230 (281)
T ss_dssp CEEEEEETTSCSCEECC
T ss_pred cceEEEeCCCCceEEee
Confidence 78999999999988776
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.62 E-value=9.2e-15 Score=151.24 Aligned_cols=183 Identities=9% Similarity=0.017 Sum_probs=138.7
Q ss_pred ceEEE-ECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 148 GAFRI-FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 148 ~~~~~-~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
..|+| +++.+++.. .++||++++.+ +..++++.. .++..++|||||++|+++..+.. ..|+++
T Consensus 8 ~~fSP~dG~~~a~~~--~g~v~v~d~~~--~~~~~~~~~-----~~v~~~~~spDg~~l~~~~~~~g-------~~v~v~ 71 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS--RGQAFIQDVSG--TYVLKVPEP-----LRIRYVRRGGDTKVAFIHGTREG-------DFLGIY 71 (360)
T ss_dssp EEEEECGGGCEEEEE--TTEEEEECTTS--SBEEECSCC-----SCEEEEEECSSSEEEEEEEETTE-------EEEEEE
T ss_pred ccccCCCCCEEEEEE--CCeEEEEECCC--CcEEEccCC-----CCEEEEEECCCCCEEEEEEcCCC-------CEEEEE
Confidence 45888 677888875 56899999998 888888643 56788999999999999877542 469999
Q ss_pred EcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 227 ALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 227 dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
|+++++.+++..........+|||||++|++.. ....+++++++ +++. ..++.... .....++|+
T Consensus 72 d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------~~~~~~~~~~~-~~~~--~~~~~~~~----~~~~~~~~s 136 (360)
T d1k32a3 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN--------DRFEIMTVDLE-TGKP--TVIERSRE----AMITDFTIS 136 (360)
T ss_dssp ETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE--------TTSEEEEEETT-TCCE--EEEEECSS----SCCCCEEEC
T ss_pred ECCCCcEEEeeCCCceEEeeeecccccccceec--------ccccccccccc-ccce--eeeeeccc----ccccchhhc
Confidence 999999999988777788899999999999887 33458999988 6664 33444443 556789999
Q ss_pred CCCc-EEEEEecCC------CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEE
Q 004816 307 SKGE-LFFVTDRKN------GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 373 (729)
Q Consensus 307 pDG~-l~~~~~~~~------g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~ 373 (729)
|||+ |++...... ....+++++..+++...++..........|++ +++.|++.+.
T Consensus 137 pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~sp------------dg~~l~~~s~ 198 (360)
T d1k32a3 137 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA------------DSKNLYYLSY 198 (360)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECT------------TSCEEEEEES
T ss_pred cceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccC------------CCCEEEEEeC
Confidence 9999 777664411 23568889999998888876554444556665 6666666553
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.61 E-value=1.1e-14 Score=145.85 Aligned_cols=239 Identities=13% Similarity=0.087 Sum_probs=147.5
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch---hhhHHHhhCCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~la~~G~~v~~~d~rGs~ 533 (729)
.++.+++++...|..+...+. .+++|+|+++||.++......|. ...+++.+.|++|+.||-...
T Consensus 5 ~v~~~~~~s~~~~r~i~~~~~-----------~~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~~- 72 (280)
T d1dqza_ 5 PVEYLQVPSASMGRDIKVQFQ-----------GGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQS- 72 (280)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-----------CCSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTT-
T ss_pred EEEEEEEecccCCCcceEEee-----------CCCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCCC-
Confidence 456777877656788887663 23469999999975544333333 255778889999999995322
Q ss_pred CCchhHHHhhccC--CCcccHHH--HHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh
Q 004816 534 GYGREFRERLLGR--WGIVDVND--CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 534 g~g~~~~~~~~~~--~~~~~~~D--~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~ 608 (729)
++...|....... -+....++ +.+++.+|.++..+|++|++|.|+||||++|+.++. +|++|+++++++|..+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~ 152 (280)
T d1dqza_ 73 SFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPS 152 (280)
T ss_dssp CTTSBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTT
T ss_pred CcCccccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcc
Confidence 2222222111111 11112232 345667777777789999999999999999999998 999999999999987653
Q ss_pred HHhhhcch------hhhhhhhhhcC--ChhhhhhcCcccccCCC---CCCEEEEEeCCCCCCC--------------hHH
Q 004816 609 MLRAETHK------FESRYIDNLVG--SEKDYYEKSPINFVDKF---SCPIILFQGLEDKVVP--------------PDQ 663 (729)
Q Consensus 609 ~~~~~~~~------~~~~~~~~~~~--~~~~~~~~sp~~~~~~i---~~PvL~i~G~~D~~vp--------------~~~ 663 (729)
........ .........++ ....+.+.+|...++++ ..++++.+|..|...+ ...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~~~ 232 (280)
T d1dqza_ 153 ESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRT 232 (280)
T ss_dssp STTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred cCcchhhhhhhHhhccCCCHhhccCCcchhhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccccchhhHHHHHH
Confidence 21110000 00000111111 22445667777766654 3678888998876543 245
Q ss_pred HHHHHHHHHhCCCCE-EEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 664 ARKIYKALKENGLPV-ALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 664 ~~~~~~~l~~~g~~~-~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+.++.+.|+++|... .+...++++|.+. .+.+.+..++-.+.+.
T Consensus 233 ~~~~~~~l~~~g~~~~~~~~~~~GgH~W~---~W~~~L~~~~p~~~~~ 277 (280)
T d1dqza_ 233 NQTFRDTYAADGGRNGVFNFPPNGTHSWP---YWNEQLVAMKADIQHV 277 (280)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEcCCCccCch---HHHHHHHHHhHHHHHH
Confidence 678889999988754 4444556789763 3444444333444333
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.59 E-value=2.8e-17 Score=168.16 Aligned_cols=223 Identities=14% Similarity=0.039 Sum_probs=132.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc-----chhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-----LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 546 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~-----~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~ 546 (729)
+.+..+.|.+ .++.| ||++||++.+...+. +..++++++++||.|+++|+||.|.++..........
T Consensus 46 ~~v~~~~p~~-------~~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~~~ 117 (318)
T d1qlwa_ 46 MYVRYQIPQR-------AKRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVK 117 (318)
T ss_dssp EEEEEEEETT-------CCSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHH
T ss_pred EEEEEECCCC-------CCCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCHHH
Confidence 3344456654 44567 566899987655443 3347889999999999999999988876544333222
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEEeccccChhHH-------hhhcchh
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADLSML-------RAETHKF 617 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-~~~~~a~v~~~~~~d~~~~-------~~~~~~~ 617 (729)
+... +.+.+ ........++++.|||+||.++..++. . +......++..+....... .......
T Consensus 118 ~~~~----~~~~l----~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (318)
T d1qlwa_ 118 LGKA----PASSL----PDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKL 189 (318)
T ss_dssp TTSS----CGGGS----CCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHH
T ss_pred HHHH----HHHHH----HHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHH
Confidence 2211 11111 111123456778899999987766654 2 2211111111111110000 0000000
Q ss_pred hhhh--------hhhh-----c--CCh---------hhhhhcCcccccCCCCCCEEEEEeCCCCCCCh-----HHHHHHH
Q 004816 618 ESRY--------IDNL-----V--GSE---------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPP-----DQARKIY 668 (729)
Q Consensus 618 ~~~~--------~~~~-----~--~~~---------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~-----~~~~~~~ 668 (729)
.... .... . ... +.+....+......+++|+|+++|++|.++|. .++..++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Lii~G~~D~~~p~~~~~~~~~~~~~ 269 (318)
T d1qlwa_ 190 AIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFI 269 (318)
T ss_dssp HHHHTSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHH
T ss_pred HhhhccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCCEEEEecCcCcccChhhhHHHHHHHHH
Confidence 0000 0000 0 000 01112245556777889999999999999984 5677889
Q ss_pred HHHHhCCCCEEEEEEC-----CCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 669 KALKENGLPVALVEYE-----GEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 669 ~~l~~~g~~~~~~~~~-----~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+.|+++|.+++++.+| |+||.+....+..+..+.+.+||+++
T Consensus 270 ~~l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 270 DALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp HHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 9999999999999977 46698766667789999999999986
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.56 E-value=3.2e-14 Score=139.49 Aligned_cols=200 Identities=13% Similarity=0.082 Sum_probs=116.7
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
.+.|+||++||.+++ ...|...+..|++.||.|+++|+||.|........ ...+...+.+.+.......
T Consensus 14 ~~~P~ivllHG~~~~--~~~~~~~~~~L~~~g~~vi~~Dl~G~G~s~~~~~~---------~~~~~~~~~~~~~~~~~~~ 82 (264)
T d1r3da_ 14 ARTPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPGHGTNPERHCD---------NFAEAVEMIEQTVQAHVTS 82 (264)
T ss_dssp TTBCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCT
T ss_pred CCCCeEEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEeccccccccccccc---------ccchhhhhhhhcccccccc
Confidence 345889999998544 45678888999999999999999976643322111 0111222222222233345
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh------hHHhh---h---------cch---hhhh-hhhhhc
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL------SMLRA---E---------THK---FESR-YIDNLV 626 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~------~~~~~---~---------~~~---~~~~-~~~~~~ 626 (729)
.+++.++|||+||.+++.++. +|+.+..++...+.... ..... . ... .... +.....
T Consensus 83 ~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (264)
T d1r3da_ 83 EVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQQAVF 162 (264)
T ss_dssp TSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTTSGGG
T ss_pred cCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 678999999999999999887 88888777765432210 00000 0 000 0000 000000
Q ss_pred C-----------------Chh----hhhh------cCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEE
Q 004816 627 G-----------------SEK----DYYE------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 679 (729)
Q Consensus 627 ~-----------------~~~----~~~~------~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 679 (729)
. ... .... ......+..+++|+|+++|++|..+ ..+.+. . .++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~-----~~~~~~-~----~~~ 232 (264)
T d1r3da_ 163 SSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKF-----QQLAES-S----GLS 232 (264)
T ss_dssp TTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHH-----HHHHHH-H----CSE
T ss_pred cccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHH-----HHHHhc-C----CCe
Confidence 0 000 0000 0112235678899999999999532 222222 1 458
Q ss_pred EEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 680 LVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 680 ~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+++++++||... .+...++.+.+.+|++..+
T Consensus 233 ~~~i~~~gH~~~-~e~P~~~~~~i~~fl~~l~ 263 (264)
T d1r3da_ 233 YSQVAQAGHNVH-HEQPQAFAKIVQAMIHSII 263 (264)
T ss_dssp EEEETTCCSCHH-HHCHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCchH-HHCHHHHHHHHHHHHHhcc
Confidence 999999999754 3566788889999998754
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.56 E-value=2.1e-13 Score=147.29 Aligned_cols=314 Identities=9% Similarity=0.011 Sum_probs=187.0
Q ss_pred CccCceEEcC-CCcEEEEeecCC---CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~---~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (729)
..+.++.||| |+.|+|...... ......+|.++..+ ++...++..+..+ ....|++++..|+|.. +
T Consensus 62 ~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~-~~~~~l~~~~~~~-------~~~~~SPDG~~ia~~~--~ 131 (470)
T d2bgra1 62 HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQLITEERIPNNT-------QWVTWSPVGHKLAYVW--N 131 (470)
T ss_dssp SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECCSSCCCTTE-------EEEEECSSTTCEEEEE--T
T ss_pred CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC-CcccccccCCccc-------cccccccCcceeeEee--c
Confidence 4567899999 999988753211 12233456666652 3455555433111 1345778888999985 4
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCc---------------eeeecceecCCCCEEEEEEeccCCC--------------
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPL---------------VSYADGIFDPRFNRYVTVREDRRQD-------------- 215 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~---------------~~~~~~~~SPdG~~l~~~~~~~~~~-------------- 215 (729)
.+||++++.+ ++..+++....... .....+.|||||++|+|.+.+....
T Consensus 132 ~~l~~~~~~~--g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~ 209 (470)
T d2bgra1 132 NDIYVKIEPN--LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQ 209 (470)
T ss_dssp TEEEEESSTT--SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCS
T ss_pred ccceEEECCC--CceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCC
Confidence 5799999998 77777775421110 1123356999999999987543311
Q ss_pred -------------CCCcceEEEEEEcCCCceEEeee------------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 216 -------------ALNSTTEIVAIALNGQNIQVLVS------------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 216 -------------~~~~~~~l~~~dl~~g~~~~lt~------------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
.......+++++++++....+.. +......+.|+++++.+++.. .+... ....
T Consensus 210 ~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~r~~~-~~~~ 287 (470)
T d2bgra1 210 YPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWL-RRIQN-YSVM 287 (470)
T ss_dssp SCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEE-ESSTT-EEEE
T ss_pred CCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEe-eccCC-ceEE
Confidence 01123457777877654322110 112335678999997555544 33220 1122
Q ss_pred EEEEEEecCCCCeeeeE---EecCCCCCcc--ccccCceeCCCCc--EEEEEecCCCceEEEEEEcCCCeEEEeeccCcc
Q 004816 271 ELWVGYISENGDVYKRV---CVAGFDPTIV--ESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE 343 (729)
Q Consensus 271 ~l~~~d~~~~g~~~~~~---~~~~~~~~~~--~~~~~~~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~ 343 (729)
.++.+|.. +|....+. ........|. .....+.|++++. +++.+.. .|+.+||+++.++++.+.|+.+..+
T Consensus 288 ~~~~~d~~-tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~-dg~~~ly~~~~~g~~~~~lt~g~~~ 365 (470)
T d2bgra1 288 DICDYDES-SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE-EGYRHICYFQIDKKDCTFITKGTWE 365 (470)
T ss_dssp EEEEEETT-TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT-TSCEEEEEEETTCSCCEESCCSSSC
T ss_pred EEEEecCC-CCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEecc-CcCceeEEEeccCCceeeeccCCee
Confidence 34444444 44432110 0111111222 1234678888876 5566666 8899999999999999999866555
Q ss_pred ccCCcccccCcceeeeeecCCCCEEEEEEEEC----CeEEEEEEECCCC-ceEeeccC----CcceEEe--eeeCCEEEE
Q 004816 344 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQN----GRSYLGILDDFGH-SLSLLDIP----FTDIDNI--TLGNDCLFV 412 (729)
Q Consensus 344 ~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~----g~~~ly~~d~~~g-~~~~lt~~----~~~v~~~--~~~~~~~~~ 412 (729)
+... +.. +++.+||++... +..|||+++++++ +.+.||.. ...+..+ +++++.++.
T Consensus 366 v~~~-~~~------------d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~ 432 (470)
T d2bgra1 366 VIGI-EAL------------TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL 432 (470)
T ss_dssp EEEE-EEE------------CSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred EEEE-EEE------------CCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEE
Confidence 4332 221 677888887643 4569999999875 56777643 2234444 677888888
Q ss_pred EEeCCCCCceEEEEEcCCCc
Q 004816 413 EGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 413 ~~~~~~~~~~ly~~d~~~~~ 432 (729)
.+++++.|.. .+++..+++
T Consensus 433 ~~s~~~~P~~-~l~~~~~g~ 451 (470)
T d2bgra1 433 RCSGPGLPLY-TLHSSVNDK 451 (470)
T ss_dssp EECSBSSCEE-EEEETTTTE
T ss_pred EecCCCCCeE-EEEECCCCC
Confidence 8888888864 455555554
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=2.8e-14 Score=142.76 Aligned_cols=248 Identities=14% Similarity=0.140 Sum_probs=151.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCC-CCCCCCCCEEEEEcCCCCCCccccc-hhhhHHHhhCCcEEEEecCCCC--
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQ-ASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGS-- 532 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~-~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la~~G~~v~~~d~rGs-- 532 (729)
+..++++.+...|..+.+.+|.|++.... .++++++|+|+++||.++....+.. ....+...+.|++|+.++....
T Consensus 13 ~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~~ 92 (299)
T d1pv1a_ 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGD 92 (299)
T ss_dssp EEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEECCSSCCST
T ss_pred EEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCCHHHHHHhhhHHHHHHHcCCceecCCCccccc
Confidence 44667777776788899999999874221 1246779999999997544322211 1234455567999998863211
Q ss_pred --C---------CCchhHHHh-----hcc--CCCcccHHHHHHHHHHHHhC----CCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 533 --T---------GYGREFRER-----LLG--RWGIVDVNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 533 --~---------g~g~~~~~~-----~~~--~~~~~~~~D~~~~~~~l~~~----~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
. +.+..+... ..+ ++...-.+|+...|+..... ...+.++.+|.|+||||+.|+.++.
T Consensus 93 ~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~al 172 (299)
T d1pv1a_ 93 EVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYL 172 (299)
T ss_dssp TSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHHH
T ss_pred ccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHHH
Confidence 0 001111100 000 11111133444444433221 1123468999999999999999874
Q ss_pred ---CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCC---CC-CCEEEEEeCCCCCCChH
Q 004816 591 ---FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDK---FS-CPIILFQGLEDKVVPPD 662 (729)
Q Consensus 591 ---~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~---i~-~PvL~i~G~~D~~vp~~ 662 (729)
+|++|.++++.+|+.++......... .....+ ....+...+|...+++ .. .++++.+|.+|...+..
T Consensus 173 ~~~~p~~f~~~~s~s~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D~~~~~~ 247 (299)
T d1pv1a_ 173 KGYSGKRYKSCSAFAPIVNPSNVPWGQKA-----FKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEH 247 (299)
T ss_dssp HTGGGTCCSEEEEESCCCCSTTSHHHHHH-----HHHHSCC----CGGGCHHHHGGGSCCCTTCCEEEECCTTCTTTTTT
T ss_pred HhcCCCceEEEeeccCcCCcccccchhhh-----hhhhcccchhhhhhcCHHHHHHHhhccCCcceeEecCCCCcchhhh
Confidence 69999999999998876432221111 112222 2334455555444332 22 46888899999876543
Q ss_pred -HHHHHHHHHHhCCCC--EEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 663 -QARKIYKALKENGLP--VALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 663 -~~~~~~~~l~~~g~~--~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
..+.+.++++.+|.+ +++.+.||.+|.+ ..+...++..++|+.++|+
T Consensus 248 ~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw---~yW~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 248 LKPELLLEAVKATSWQDYVEIKKVHGFDHSY---YFVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp CCTHHHHHHHTTSTTTTSEEEECCTTCCSSH---HHHHHHHHHHHHHHHHHTT
T ss_pred hcHHHHHHHHHhcCCCcceEEEecCCCCcCH---HHHHHHHHHHHHHHHHhcC
Confidence 357799999988865 7888888888986 3466788888999999886
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.51 E-value=2.1e-13 Score=136.50 Aligned_cols=215 Identities=10% Similarity=0.041 Sum_probs=124.9
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++.... ..|.||++||.+.+ ...|...+..|+ .+|.|+++|+||.|.+...-. ....
T Consensus 16 ~g~~i~y~~~G------------~g~~vvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~Dl~G~G~S~~~~~---~~~~ 77 (298)
T d1mj5a_ 16 KGRRMAYIDEG------------TGDPILFQHGNPTS--SYLWRNIMPHCA-GLGRLIACDLIGMGDSDKLDP---SGPE 77 (298)
T ss_dssp TTEEEEEEEES------------CSSEEEEECCTTCC--GGGGTTTGGGGT-TSSEEEEECCTTSTTSCCCSS---CSTT
T ss_pred CCEEEEEEEEc------------CCCcEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEEeCCCCCCCCCCcc---cccc
Confidence 79999865431 13678999998654 345666677775 469999999998665432211 1111
Q ss_pred CcccHHHHHHHHH-HHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh------------
Q 004816 548 GIVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE------------ 613 (729)
Q Consensus 548 ~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~------------ 613 (729)
. ....+..+.+. .+.+.. ..+++.++|||+||.+++.++. +|++++++++..+..........
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
T d1mj5a_ 78 R-YAYAEHRDYLDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFR 154 (298)
T ss_dssp S-SCHHHHHHHHHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHH
T ss_pred c-cccchhhhhhcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeeccccccccccchhhhhhhhhhhhhhh
Confidence 1 12333333333 333332 3468999999999999999998 99999999988764321110000
Q ss_pred ----------cchhhhhhhhhhcC---Ch--------------hhh---------------------hhcCcccccCCCC
Q 004816 614 ----------THKFESRYIDNLVG---SE--------------KDY---------------------YEKSPINFVDKFS 645 (729)
Q Consensus 614 ----------~~~~~~~~~~~~~~---~~--------------~~~---------------------~~~sp~~~~~~i~ 645 (729)
.............. .. ... ........+..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (298)
T d1mj5a_ 155 SQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESP 234 (298)
T ss_dssp STTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhhhhhhhhhhhhhhccccccccchhhhhhhhhhhhccchhhhhhhhhhhhhhhhcchhhhhhhhhhhhhhhhhhcc
Confidence 00000000000000 00 000 0000012256788
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+|+|+++|++|.+.+ ....++.+.+ ...++++. ++||... .+...++.+.+.+|+++.
T Consensus 235 ~P~l~i~g~~d~~~~-~~~~~~~~~~----p~~~~~~~-~~GH~~~-~e~P~~v~~~i~~fl~~~ 292 (298)
T d1mj5a_ 235 IPKLFINAEPGALTT-GRMRDFCRTW----PNQTEITV-AGAHFIQ-EDSPDEIGAAIAAFVRRL 292 (298)
T ss_dssp SCEEEEEEEECSSSS-HHHHHHHTTC----SSEEEEEE-EESSCGG-GTCHHHHHHHHHHHHHHH
T ss_pred eeEEEEecCCCCcCh-HHHHHHHHHC----CCCEEEEe-CCCCchH-HhCHHHHHHHHHHHHhhh
Confidence 999999999998665 3444443322 24555555 5699654 456788999999999885
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.51 E-value=3.8e-14 Score=141.40 Aligned_cols=213 Identities=14% Similarity=0.039 Sum_probs=128.1
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc-ch----hhhHHH----hhCCcEEEE
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LN----LSIQYW----TSRGWAFVD 526 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~-~~----~~~~~l----a~~G~~v~~ 526 (729)
.+.+++++... +| ...+++|.|++.+ +++++|+|+++||+++...... .. ...+.+ ....+.|+.
T Consensus 25 g~v~~~~~~~~-~~-~r~~~vylP~~y~----~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 98 (273)
T d1wb4a1 25 GRIVKETYTGI-NG-TKSLNVYLPYGYD----PNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVT 98 (273)
T ss_dssp CEEEEEEEEET-TE-EEEEEEEECTTCC----TTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEE
T ss_pred CeEEEEEEecC-CC-eEEEEEEeCCCCC----CCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeec
Confidence 46688888886 66 4588999999843 4678999999999865433321 11 111222 223689999
Q ss_pred ecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 527 VNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 527 ~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
+++++..+.+..+.......... .+..+....++.+..+..+|+++++|+|+|+||++|+.++. +|++|+++++.+|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~ 178 (273)
T d1wb4a1 99 PTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGD 178 (273)
T ss_dssp CCSCSTTCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCC
T ss_pred cccCCCCCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcc
Confidence 99988777666654433222110 00111111122222233478999999999999999999987 99999999999997
Q ss_pred cChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHH----------hC
Q 004816 605 ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK----------EN 674 (729)
Q Consensus 605 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~----------~~ 674 (729)
............. ... .... ........++++.+|..|. +......+.+.+. ..
T Consensus 179 ~~~~~~~~~~~~~---~~~-------~~~~----~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (273)
T d1wb4a1 179 YWYGNSPQDKANS---IAE-------AINR----SGLSKREYFVFAATGSEDI--AYANMNPQIEAMKALPHFDYTSDFS 242 (273)
T ss_dssp CCBSSSHHHHHHH---HHH-------HHHH----HTCCTTSCEEEEEEETTCT--THHHHHHHHHHHHTSTTCCBBSCTT
T ss_pred cccCCCccccccc---chh-------hhhh----hhhcccceEEEEecCCCCc--ccccchhHHHHHHHHHHHHHHHHhc
Confidence 6543321110000 000 0000 0112223446666777664 3444445545443 33
Q ss_pred CCCEEEEEECCCCccc
Q 004816 675 GLPVALVEYEGEQHGF 690 (729)
Q Consensus 675 g~~~~~~~~~~~gH~~ 690 (729)
++.+.+.++++++|.+
T Consensus 243 ~~~~~~~~~~~ggH~w 258 (273)
T d1wb4a1 243 KGNFYFLVAPGATHWW 258 (273)
T ss_dssp TCCEEEEEETTCCSSH
T ss_pred CCCEEEEEECCCccCH
Confidence 5688999999999963
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.51 E-value=3.5e-13 Score=139.04 Aligned_cols=185 Identities=9% Similarity=0.012 Sum_probs=124.1
Q ss_pred eEEcC--CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC-cEEEE
Q 004816 94 TAVDG--HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ-RLYKH 170 (729)
Q Consensus 94 ~~~~p--g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~ 170 (729)
..+|| |+.+.+.. .|+ ++.++.. ++..+++.... .++ ...|+++++.|++....++ .|+++
T Consensus 8 ~~fSP~dG~~~a~~~-----~g~--v~v~d~~-~~~~~~~~~~~-~v~-------~~~~spDg~~l~~~~~~~g~~v~v~ 71 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-----RGQ--AFIQDVS-GTYVLKVPEPL-RIR-------YVRRGGDTKVAFIHGTREGDFLGIY 71 (360)
T ss_dssp EEEEECGGGCEEEEE-----TTE--EEEECTT-SSBEEECSCCS-CEE-------EEEECSSSEEEEEEEETTEEEEEEE
T ss_pred ccccCCCCCEEEEEE-----CCe--EEEEECC-CCcEEEccCCC-CEE-------EEEECCCCCEEEEEEcCCCCEEEEE
Confidence 56887 67777754 233 5555655 23455543211 111 2345555667777766554 78999
Q ss_pred eCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-CCeeeeeeeC
Q 004816 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG-SDFYAFPRMD 249 (729)
Q Consensus 171 d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~-~~~~~~~~~S 249 (729)
|+.+ ++.+++... ...+...+|||||++|++...+ ..++++++++++...+... ......++||
T Consensus 72 d~~~--~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 136 (360)
T d1k32a3 72 DYRT--GKAEKFEEN----LGNVFAMGVDRNGKFAVVANDR---------FEIMTVDLETGKPTVIERSREAMITDFTIS 136 (360)
T ss_dssp ETTT--CCEEECCCC----CCSEEEEEECTTSSEEEEEETT---------SEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred ECCC--CcEEEeeCC----CceEEeeeecccccccceeccc---------cccccccccccceeeeeecccccccchhhc
Confidence 9998 888888876 3556788999999998887664 4699999999888766553 3455679999
Q ss_pred CCCCeEEEEEecCCCCCC--CCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec
Q 004816 250 PRGERMAWIEWHHPNMPW--DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 317 (729)
Q Consensus 250 PDG~~la~~~~~~~~~~~--~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~ 317 (729)
|||++|+|.........+ ....++++++. +++. ..+.. .. .....+.|+|||+ |++.+.+
T Consensus 137 pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~-~~~~--~~~~~-~~----~~~~~~~~spdg~~l~~~s~~ 199 (360)
T d1k32a3 137 DNSRFIAYGFPLKHGETDGYVMQAIHVYDME-GRKI--FAATT-EN----SHDYAPAFDADSKNLYYLSYR 199 (360)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETT-TTEE--EECSC-SS----SBEEEEEECTTSCEEEEEESC
T ss_pred cceeeeeeeccccccceeeccccceeeeccc-cCce--eeecc-cc----cccccccccCCCCEEEEEeCC
Confidence 999999998755443222 34568899987 5543 22222 22 3445688999999 8877754
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.31 E-value=1e-11 Score=130.54 Aligned_cols=125 Identities=16% Similarity=-0.054 Sum_probs=87.5
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCC------cEEEEecCCCC
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG------WAFVDVNYGGS 532 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G------~~v~~~d~rGs 532 (729)
.++.... +|..|+.......+ +..|.||++||.|++. ..|...+..|++.| |.|+++|+||.
T Consensus 83 ~~f~~~i--~G~~iHf~h~~~~~--------~~~~pLlLlHG~P~s~--~~w~~vi~~La~~g~~~~~~f~VIaPDLpG~ 150 (394)
T d1qo7a_ 83 PQFTTEI--EGLTIHFAALFSER--------EDAVPIALLHGWPGSF--VEFYPILQLFREEYTPETLPFHLVVPSLPGY 150 (394)
T ss_dssp CEEEEEE--TTEEEEEEEECCSC--------TTCEEEEEECCSSCCG--GGGHHHHHHHHHHCCTTTCCEEEEEECCTTS
T ss_pred CCeEEEE--CCEEEEEEEEeccC--------CCCCEEEEeccccccH--HHHHHHHHhhccccCCcccceeeeccccccc
Confidence 3444433 89999976665433 3457799999997664 55677888999888 99999999976
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecc
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYG 603 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~ 603 (729)
|.+... ... ......++...+..|.... ..++..++|||+||.++..++. +++.+.++++...
T Consensus 151 G~S~~P---~~~---~~y~~~~~a~~~~~l~~~l--g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~ 214 (394)
T d1qo7a_ 151 TFSSGP---PLD---KDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLC 214 (394)
T ss_dssp TTSCCC---CSS---SCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCC---CCC---CccCHHHHHHHHHHHHhhc--cCcceEEEEecCchhHHHHHHHHhhccccceeEeee
Confidence 543321 111 1133555666666665553 3467899999999999988887 8888888877654
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=9.6e-12 Score=121.96 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhC--CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~--G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
+| ||++||.+++. ..|......|.+. ||.|+++|+||.| .+..... ...+++...+..+++. .+
T Consensus 3 ~P-vvllHG~~~~~--~~~~~~~~~l~~~~~~~~v~~~d~~G~g---~S~~~~~------~~~~~~~~~l~~~l~~--l~ 68 (268)
T d1pjaa_ 3 KP-VIVVHGLFDSS--YSFRHLLEYINETHPGTVVTVLDLFDGR---ESLRPLW------EQVQGFREAVVPIMAK--AP 68 (268)
T ss_dssp CC-EEEECCTTCCG--GGGHHHHHHHHHHSTTCCEEECCSSCSG---GGGSCHH------HHHHHHHHHHHHHHHH--CT
T ss_pred CC-EEEECCCCCCH--HHHHHHHHHHHhhCCCeEEEEeCCCCCC---CCCCccc------cCHHHHHHHHHHHHhc--cC
Confidence 35 56789985443 5677788888774 8999999999644 3322111 2244455445544444 23
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCC-cceEEEEecc
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRD-TFKAGASLYG 603 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~-~~~a~v~~~~ 603 (729)
+++.|+||||||.+|+.++. +|+ +++.+|+.++
T Consensus 69 -~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 69 -QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp -TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred -CeEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 79999999999999999998 998 6999998876
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.25 E-value=2.2e-10 Score=116.13 Aligned_cols=215 Identities=14% Similarity=0.115 Sum_probs=132.1
Q ss_pred CCCCEEEEEcCCCCCCccc-------cchhh---hHHHhhCCcEEEEecCCCCCCCchhHHHhh--------ccCCCccc
Q 004816 490 EKPPLLVKSHGGPTSEARG-------ILNLS---IQYWTSRGWAFVDVNYGGSTGYGREFRERL--------LGRWGIVD 551 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~-------~~~~~---~~~la~~G~~v~~~d~rGs~g~g~~~~~~~--------~~~~~~~~ 551 (729)
++-++||++|+..++.... .|..+ -..+--.-|-|+++|+.|++. |.+-.... ..++....
T Consensus 37 ~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~-gSs~p~s~~p~tg~~~g~~FP~it 115 (357)
T d2b61a1 37 EKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCK-GTTGPSSINPQTGKPYGSQFPNIV 115 (357)
T ss_dssp TCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSS-SSSCTTSBCTTTSSBCGGGCCCCC
T ss_pred CCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCcc-ccCCcCCCCCCCCCCCCcccccch
Confidence 3458999999964433221 11221 123334569999999998543 11111111 12234556
Q ss_pred HHHHHHHHHHHHhCCCCCCCcE-EEEEcChHHHHHHHHHh-CCCcceEEEEeccccC--hhHHh----------hh----
Q 004816 552 VNDCCSCATFLVGSGKADEKRL-CITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD--LSMLR----------AE---- 613 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri-~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d--~~~~~----------~~---- 613 (729)
+.|.+++-..|+++-. .+|+ +++|.||||+.|+..+. +|+.++.+|++++..- ..... ..
T Consensus 116 i~D~v~aq~~Ll~~LG--I~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~~ 193 (357)
T d2b61a1 116 VQDIVKVQKALLEHLG--ISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFN 193 (357)
T ss_dssp HHHHHHHHHHHHHHTT--CCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCG
T ss_pred hHHHHHHHHHHHHHhC--cceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccccccchhHHHHHHHHHHHHHcCCCCC
Confidence 8999999988887744 4677 78899999999998888 9999999999887431 11000 00
Q ss_pred -c------c-hhh---hh-----------hhhhhcC-------------------------------Chhh-------hh
Q 004816 614 -T------H-KFE---SR-----------YIDNLVG-------------------------------SEKD-------YY 633 (729)
Q Consensus 614 -~------~-~~~---~~-----------~~~~~~~-------------------------------~~~~-------~~ 633 (729)
. . ... .+ .+...++ +... +.
T Consensus 194 ~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~~ 273 (357)
T d2b61a1 194 GGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRALD 273 (357)
T ss_dssp GGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHhhCCHHHHHHHHHHhh
Confidence 0 0 000 00 0000000 0000 01
Q ss_pred hcCcc-------cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCC-CcccCCcccHHHHHHHHHH
Q 004816 634 EKSPI-------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE-QHGFRKAENIKFTLEQQMV 705 (729)
Q Consensus 634 ~~sp~-------~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~-gH~~~~~~~~~~~~~~~~~ 705 (729)
..++. ..+++|++|+|++..+.|...|+++.+++++.|+..++++++++++.. ||.-... +..++.+.|.+
T Consensus 274 ~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~~~~~v~~~~I~S~~GHdafL~-e~~~~~~~I~~ 352 (357)
T d2b61a1 274 MYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYGHDAFLV-DYDQFEKRIRD 352 (357)
T ss_dssp HCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTGGGHHHH-CHHHHHHHHHH
T ss_pred hcccccccccHHHHHhhcCCCEEEEEeCCccccCHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCc-CHHHHHHHHHH
Confidence 11111 126889999999999999999999999999999999999999999964 7751111 23345555666
Q ss_pred HHH
Q 004816 706 FFA 708 (729)
Q Consensus 706 fl~ 708 (729)
||.
T Consensus 353 fL~ 355 (357)
T d2b61a1 353 GLA 355 (357)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.25 E-value=9.8e-10 Score=109.42 Aligned_cols=237 Identities=12% Similarity=0.072 Sum_probs=145.3
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
+|+++++.++.....++.|.++|+.+ ++.. .+... .......|++||+.++...... ..+.+++
T Consensus 38 a~spdG~~l~v~~~~~~~i~v~d~~t--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 102 (301)
T d1l0qa2 38 VISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS--------STLSVID 102 (301)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECS-----SSEEEEEECTTSSEEEEEETTT--------TEEEEEE
T ss_pred EEeCCCCEEEEEECCCCEEEEEECCC--Cceeeeeecc-----cccccccccccccccccccccc--------ceeeecc
Confidence 34445566766766778999999987 5433 33322 2346678999999877665433 4688889
Q ss_pred cCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 228 LNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 228 l~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
..+++...............|+|||+.+++.... ...+.+++.. ++.. ....... .....+.|+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~-------~~~~~~~~~~-~~~~--~~~~~~~-----~~~~~~~~~~ 167 (301)
T d1l0qa2 103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG-------DKTVSVINTV-TKAV--INTVSVG-----RSPKGIAVTP 167 (301)
T ss_dssp TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT-------TTEEEEEETT-TTEE--EEEEECC-----SSEEEEEECT
T ss_pred cccceeeeeccccccceEEEeecCCCeeeeeecc-------ccceeeeecc-ccce--eeecccC-----CCceEEEeec
Confidence 9888766655555555678999999998776632 2347778876 5543 3333332 3345678999
Q ss_pred CCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 308 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 308 DG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
|++.++.... +...+...+....+............. ..+.+ +++.+++.........|+++|+.+
T Consensus 168 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---~g~~~~v~~~~~~~~~v~v~D~~t 233 (301)
T d1l0qa2 168 DGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSG---------IAVNP---EGTKAYVTNVDKYFNTVSMIDTGT 233 (301)
T ss_dssp TSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEE---------EEECT---TSSEEEEEEECSSCCEEEEEETTT
T ss_pred cccceeeecc--cccccccccccceeeeecccccCCcce---------eeccc---cccccccccccceeeeeeeeecCC
Confidence 9994445544 223445555555555444322222112 22332 677777766555556788999988
Q ss_pred CceEe-eccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 388 HSLSL-LDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 388 g~~~~-lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
++... +..+ ..+..+ +++++++++. ...+ ..|.++|++++++
T Consensus 234 ~~~~~~~~~~-~~~~~va~spdg~~l~va-~~~~--~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 234 NKITARIPVG-PDPAGIAVTPDGKKVYVA-LSFC--NTVSVIDTATNTI 278 (301)
T ss_dssp TEEEEEEECC-SSEEEEEECTTSSEEEEE-ETTT--TEEEEEETTTTEE
T ss_pred CeEEEEEcCC-CCEEEEEEeCCCCEEEEE-ECCC--CeEEEEECCCCeE
Confidence 87543 3333 334555 4455555444 3322 4788899988864
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.24 E-value=4e-10 Score=112.79 Aligned_cols=249 Identities=11% Similarity=0.112 Sum_probs=150.4
Q ss_pred cCCHHHHhccCCcc-CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEE-C
Q 004816 78 PLTADVVSGASKRL-GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-G 154 (729)
Q Consensus 78 ~lt~e~i~~~~~~~-~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~ 154 (729)
|++.+.+......+ |+|.|++ ++.+||++... + .|++++.++ ++. .+...+ .....+.+. +
T Consensus 6 ~~~~~~~~~~~~~LgEgp~wd~~~~~l~wvDi~~---~--~I~r~d~~~-g~~-~~~~~~---------~~~~~i~~~~d 69 (295)
T d2ghsa1 6 PFAGRVLDETPMLLGEGPTFDPASGTAWWFNILE---R--ELHELHLAS-GRK-TVHALP---------FMGSALAKISD 69 (295)
T ss_dssp CCCCEEEECSCCSBEEEEEEETTTTEEEEEEGGG---T--EEEEEETTT-TEE-EEEECS---------SCEEEEEEEET
T ss_pred ceeEEEEcCCCCeeeeCCeEECCCCEEEEEECCC---C--EEEEEECCC-CeE-EEEECC---------CCcEEEEEecC
Confidence 44555444443445 8999999 99999999733 3 488888772 222 222211 012234443 4
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCC-CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
+.+++.. ...|+++|+++ ++.+.+.... +.+..+.++..+.|+|+.++......... ....+|.++ .++.
T Consensus 70 g~l~va~--~~gl~~~d~~t--g~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~---~~g~l~~~~--~g~~ 140 (295)
T d2ghsa1 70 SKQLIAS--DDGLFLRDTAT--GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAET---GAGSIYHVA--KGKV 140 (295)
T ss_dssp TEEEEEE--TTEEEEEETTT--CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCT---TCEEEEEEE--TTEE
T ss_pred CCEEEEE--eCccEEeeccc--ceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccc---cceeEeeec--CCcE
Confidence 4666654 34699999998 7777775432 23357889999999999655554433222 135677665 4677
Q ss_pred EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCC-Ce-eeeEEe---cCCCCCccccccCceeCCC
Q 004816 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DV-YKRVCV---AGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g-~~-~~~~~~---~~~~~~~~~~~~~~~wspD 308 (729)
+.+..+....+++.||||++.++|+... ...||.++++..+ .. .+...+ .+.. .....++...+
T Consensus 141 ~~~~~~~~~~Ng~~~s~d~~~l~~~dt~-------~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~----g~pdG~~vD~~ 209 (295)
T d2ghsa1 141 TKLFADISIPNSICFSPDGTTGYFVDTK-------VNRLMRVPLDARTGLPTGKAEVFIDSTGIK----GGMDGSVCDAE 209 (295)
T ss_dssp EEEEEEESSEEEEEECTTSCEEEEEETT-------TCEEEEEEBCTTTCCBSSCCEEEEECTTSS----SEEEEEEECTT
T ss_pred EEEeeccCCcceeeecCCCceEEEeecc-------cceeeEeeecccccccccceEEEeccCccc----ccccceEEcCC
Confidence 7777666677889999999999888732 3459999886322 11 112222 2222 44556778888
Q ss_pred CcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 309 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 309 G~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
|.|++.... ...|.++|+++.....+.-.....+ ++.|-.+ +.+.||+++.+.+
T Consensus 210 GnlWva~~~---~g~V~~~dp~G~~~~~i~lP~~~~T---------~~~FGG~--d~~~LyvTta~~~ 263 (295)
T d2ghsa1 210 GHIWNARWG---EGAVDRYDTDGNHIARYEVPGKQTT---------CPAFIGP--DASRLLVTSAREH 263 (295)
T ss_dssp SCEEEEEET---TTEEEEECTTCCEEEEEECSCSBEE---------EEEEEST--TSCEEEEEEBCTT
T ss_pred CCEEeeeeC---CCceEEecCCCcEeeEecCCCCceE---------EEEEeCC--CCCEEEEEECCcC
Confidence 875544333 2479999997766665542111122 2333210 5577888876543
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.21 E-value=1.2e-11 Score=123.46 Aligned_cols=209 Identities=12% Similarity=0.051 Sum_probs=121.2
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHH-HHHHHhCCC
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGK 567 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~ 567 (729)
....|.++|+||...+.....|..++..|.. ++.|+.+|++|.+..... .......+++++.+. ++.+...
T Consensus 57 ~~~~~~l~c~~~~~~~g~~~~y~~la~~L~~-~~~V~al~~pG~~~~~~~-----~~~~~~~s~~~~a~~~~~~i~~~-- 128 (283)
T d2h7xa1 57 AEGRAVLVGCTGTAANGGPHEFLRLSTSFQE-ERDFLAVPLPGYGTGTGT-----GTALLPADLDTALDAQARAILRA-- 128 (283)
T ss_dssp -CCCCEEEEECCCCTTCSTTTTHHHHHTTTT-TCCEEEECCTTCCBC--------CBCCEESSHHHHHHHHHHHHHHH--
T ss_pred CCCCceEEEeCCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCCCCCCCCC-----ccccccCCHHHHHHHHHHHHHHh--
Confidence 4556889999985434445667777777755 699999999975432211 111111234444432 3444443
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-----CCCcceEEEEeccccChhHHhhh--cchhhhhhhhhhcC--Chh------hh
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-----FRDTFKAGASLYGVADLSMLRAE--THKFESRYIDNLVG--SEK------DY 632 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-----~~~~~~a~v~~~~~~d~~~~~~~--~~~~~~~~~~~~~~--~~~------~~ 632 (729)
.+..++.|+||||||.+|+.++. ++..+.+++++.+.......... .............. ... .+
T Consensus 129 ~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~ 208 (283)
T d2h7xa1 129 AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRY 208 (283)
T ss_dssp HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHHHHHHHH
Confidence 23467999999999999988875 35678888888764322111000 00000000000000 110 11
Q ss_pred hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 633 YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 633 ~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
...........+++|+|+++|++|..++.+....+.+.+ ...++++.++| +|.....+......+.|.+||++
T Consensus 209 ~~~~~~~~~~~~~~Pvl~i~g~~d~~~~~~~~~~w~~~~---~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~~~L~~ 281 (283)
T d2h7xa1 209 ARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRAHW---DLPHTVADVPG-DHFTMMRDHAPAVAEAVLSWLDA 281 (283)
T ss_dssp HHHHHSCCCCCCCSCEEEEEESSCSSCCCGGGCCCSCCC---SSCSEEEEESS-CTTHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCeEEEEeCCCCCCCHHHHHHHHHhC---CCCcEEEEEcC-CCcccccCCHHHHHHHHHHHHHh
Confidence 111111234678899999999999999886655443222 23568899997 78643335667777888899875
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=99.20 E-value=9.4e-11 Score=108.04 Aligned_cols=168 Identities=16% Similarity=0.020 Sum_probs=110.1
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.| ||++||... ....|..+.+.|.++||.|+.++++|.+....... ...+++...++.+.++. ..+
T Consensus 3 ~P-Vv~vHG~~~--~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~i~~~~~~~--~~~ 68 (179)
T d1ispa_ 3 NP-VVMVHGIGG--ASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY---------NNGPVLSRFVQKVLDET--GAK 68 (179)
T ss_dssp CC-EEEECCTTC--CGGGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH---------HHHHHHHHHHHHHHHHH--CCS
T ss_pred CC-EEEECCCCC--CHHHHHHHHHHHHHcCCeEEEEecCCccccccccc---------hhhhhHHHHHHHHHHhc--CCc
Confidence 36 566899744 34567888999999999999999886544322211 12455666666666552 347
Q ss_pred cEEEEEcChHHHHHHHHHh-C--CCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCE
Q 004816 572 RLCITGGSAGGYTTLAALA-F--RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPI 648 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~--~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~Pv 648 (729)
++.|+||||||.++..++. + +++++.+|++++....... ..+. ........|+
T Consensus 69 ~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~------------~~l~------------~~~~~~~~~~ 124 (179)
T d1ispa_ 69 KVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG------------KALP------------GTDPNQKILY 124 (179)
T ss_dssp CEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS------------BCCC------------CSCTTCCCEE
T ss_pred eEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchh------------hhcC------------CcccccCceE
Confidence 8999999999999998886 3 6789999998874321100 0000 0012335789
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+.++|..|.+|++..+. +. ..+.+.+++.+|.... .+ .+.++.+.+||+
T Consensus 125 ~~i~~~~D~~v~~~~~~-----l~----~~~~~~~~~~~H~~l~-~~-~~v~~~i~~~L~ 173 (179)
T d1ispa_ 125 TSIYSSADMIVMNYLSR-----LD----GARNVQIHGVGHIGLL-YS-SQVNSLIKEGLN 173 (179)
T ss_dssp EEEEETTCSSSCHHHHC-----CB----TSEEEEESSCCTGGGG-GC-HHHHHHHHHHHT
T ss_pred EEEEecCCcccCchhhc-----CC----CceEEEECCCCchhhc-cC-HHHHHHHHHHHh
Confidence 99999999999986541 11 2366788999996322 12 255666666664
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.20 E-value=5e-12 Score=126.34 Aligned_cols=126 Identities=16% Similarity=0.221 Sum_probs=82.4
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcC-----ChhhhhhcCcc
Q 004816 565 SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG-----SEKDYYEKSPI 638 (729)
Q Consensus 565 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~sp~ 638 (729)
+..+|++||+|+|+|+||++|++++. +|+.|++++.+.+....... .........+...... ..+.+...++.
T Consensus 5 ~y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (318)
T d2d81a1 5 AFNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCA-RNQYYTSCMYNGYPSITTPTANMKSWSGNQIA 83 (318)
T ss_dssp CCCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTT-SSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBC
T ss_pred hcCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhh-cccchHHHhhcCCCCCcChhHHHHHHhhcCCc
Confidence 34689999999999999999998887 99999865543221111100 0000000000000000 01222223333
Q ss_pred cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC--CCEEEEEECCCCcccC
Q 004816 639 NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG--LPVALVEYEGEQHGFR 691 (729)
Q Consensus 639 ~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g--~~~~~~~~~~~gH~~~ 691 (729)
......+.|+||+||++|.+||+.++.+++++|++.+ .+++++..++++|.|.
T Consensus 84 ~~~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~~~v~yv~~~gagH~fp 138 (318)
T d2d81a1 84 SVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFP 138 (318)
T ss_dssp CGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEE
T ss_pred chhccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCCCceEEEEeCCCCCCCC
Confidence 3334446899999999999999999999999999874 4689999999999984
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=99.19 E-value=7.2e-10 Score=112.43 Aligned_cols=215 Identities=19% Similarity=0.234 Sum_probs=130.8
Q ss_pred CCCCEEEEEcCCCCCCccc-----------cchh---hhHHHhhCCcEEEEecCCCCCCCchhHHHhhc--------cCC
Q 004816 490 EKPPLLVKSHGGPTSEARG-----------ILNL---SIQYWTSRGWAFVDVNYGGSTGYGREFRERLL--------GRW 547 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~-----------~~~~---~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~--------~~~ 547 (729)
.+-++||++|+..++.... .|.. .-..+--.-|-|+++|.-|++. |.+-..... .++
T Consensus 40 ~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~~-~ss~~~s~~p~~~~~yg~~f 118 (362)
T d2pl5a1 40 SKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCK-GSSGPLSIHPETSTPYGSRF 118 (362)
T ss_dssp TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSS-SSSSTTSBCTTTSSBCGGGS
T ss_pred CCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCcc-cccCccccccccccccCcCC
Confidence 3458999999964443221 1111 1223344559999999998543 221111111 123
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh------------h-
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR------------A- 612 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~------------~- 612 (729)
....+.|+.++-.-|+++-.| +|+. ++|.||||+.|+..+. +|+.++.+|++++........ .
T Consensus 119 P~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~D 196 (362)
T d2pl5a1 119 PFVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSD 196 (362)
T ss_dssp CCCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTS
T ss_pred ccchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCHHHHHHHHHHHHHHhcC
Confidence 445689999988888887544 5655 8899999999998887 999999999998643211000 0
Q ss_pred ---------hcc--------------------hhhhhhhhhhc------C-------------------Chh-------h
Q 004816 613 ---------ETH--------------------KFESRYIDNLV------G-------------------SEK-------D 631 (729)
Q Consensus 613 ---------~~~--------------------~~~~~~~~~~~------~-------------------~~~-------~ 631 (729)
... .+..++..... . +.. .
T Consensus 197 p~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a 276 (362)
T d2pl5a1 197 PNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKA 276 (362)
T ss_dssp TTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHH
T ss_pred CccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 000 00000000000 0 000 0
Q ss_pred hhhcCc------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC-CCCcccCCcccHHHHHHHHH
Q 004816 632 YYEKSP------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE-GEQHGFRKAENIKFTLEQQM 704 (729)
Q Consensus 632 ~~~~sp------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~-~~gH~~~~~~~~~~~~~~~~ 704 (729)
+...++ ...+++|++|+|+|..+.|..+|+++.+++++.|+.+++++++++++ ..||.-.- ....++.+.+.
T Consensus 277 ~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~~l~~a~~~v~~~eI~S~~GHdaFL-~e~~~~~~~I~ 355 (362)
T d2pl5a1 277 LDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSGEGHDSFL-LKNPKQIEILK 355 (362)
T ss_dssp HHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCCBSSGGGG-SCCHHHHHHHH
T ss_pred hhcccccccccHHHHHhhCCCCEEEEEeCcccCcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhc-cCHHHHHHHHH
Confidence 001111 11267899999999999999999999999999999999999999887 46775211 12234555666
Q ss_pred HHHH
Q 004816 705 VFFA 708 (729)
Q Consensus 705 ~fl~ 708 (729)
+||+
T Consensus 356 ~FL~ 359 (362)
T d2pl5a1 356 GFLE 359 (362)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6664
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.17 E-value=1.5e-08 Score=107.01 Aligned_cols=305 Identities=11% Similarity=0.076 Sum_probs=182.3
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC----cEEEEeCCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ----RLYKHSIDS 174 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~d~~~ 174 (729)
|++.||..... ...+..+++....+ ++...+++...-....-+..++.+++++++.++|..+..| .|+++|+.+
T Consensus 83 g~~y~~~~~~~-~~~~~~~~~~~~~~-~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t 160 (430)
T d1qfma1 83 GKRYFYFYNTG-LQNQRVLYVQDSLE-GEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (430)
T ss_dssp TTEEEEEEECS-SCSSCEEEEESSSS-SCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred CCEEEEEEecC-CCccceEEeccccC-CCeeeecchhhhcccccceecceEecCCCCEEEEEeccccCchheeEEeccCc
Confidence 77777766544 34555677665542 3455555422111111112233344455668888776554 899999998
Q ss_pred CCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC-------CCCcceEEEEEEcCCCce--EEeeeC---CCe
Q 004816 175 KDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-------ALNSTTEIVAIALNGQNI--QVLVSG---SDF 242 (729)
Q Consensus 175 ~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~-------~~~~~~~l~~~dl~~g~~--~~lt~~---~~~ 242 (729)
++....+-. ...+..+.|++|++.++|+..+.... ..+....+|+..+.+... ..+... ..+
T Consensus 161 --g~~~~~~i~----~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~ 234 (430)
T d1qfma1 161 --AKELPDVLE----RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234 (430)
T ss_dssp --TEEEEEEEE----EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred --ceecccccc----cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCce
Confidence 653322211 12336788999999999998654211 112346799988877543 344332 234
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC------eeeeEEecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD------VYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~------~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
......|+||++|......... ....+|+.|+. ... .....+..... ... .. ...+|. +++.+
T Consensus 235 ~~~~~~s~d~~~l~i~~~~~~~---~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~----~~~-~~-~~~~~~~~~~~T 304 (430)
T d1qfma1 235 MGGAELSDDGRYVLLSIREGCD---PVNRLWYCDLQ-QESNGITGILKWVKLIDNFE----GEY-DY-VTNEGTVFTFKT 304 (430)
T ss_dssp EEEEEECTTSCEEEEEEECSSS---SCCEEEEEEGG-GSSSSSCSSCCCEEEECSSS----SCE-EE-EEEETTEEEEEE
T ss_pred EEeeeccCCcceeeEEeeccCC---ccEEEEEeeCC-CcccccccccceeEeecccc----cce-EE-EecCCceeeccc
Confidence 4566789999998765533322 34568999977 221 11223333332 111 11 122445 77777
Q ss_pred ecCCCceEEEEEEcCCCe---EEEeeccC-ccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 316 DRKNGFWNLHKWIESNNE---VLAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 316 ~~~~g~~~l~~~d~~~g~---~~~l~~~~-~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
+.......|..++++... ++.|..+. ..... ..+.+ .++.|++....++...|.++++++++..
T Consensus 305 n~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~-------~~~~~-----~~~~lvl~~~~~~~~~l~v~~~~~~~~~ 372 (430)
T d1qfma1 305 NRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE-------WVACV-----RSNFLVLCYLHDVKNTLQLHDLATGALL 372 (430)
T ss_dssp CTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEE-------EEEEE-----TTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred CcccccceeEEecCCCCccccceEEecccCcceee-------eEEEE-----ECCEEEEEEEcCCEeEEEEEECCCCcEE
Confidence 764456789999876532 34555322 11100 01111 5667888888999999999999999988
Q ss_pred eeccC-CcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 392 LLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 392 ~lt~~-~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.+..+ ...+..+ ..++..+++..++..+|..+|.+|+++++.
T Consensus 373 ~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 373 KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 77544 3345444 345667888899999999999999999875
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.8e-09 Score=109.28 Aligned_cols=262 Identities=10% Similarity=0.037 Sum_probs=140.3
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
+|+++++.|+.....++.|.+|+++.++...+.+.... .......++|||||++|+...... ..+..++.
T Consensus 43 a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~--~~~~p~~l~~spDg~~l~v~~~~~--------~~v~~~~~ 112 (333)
T d1ri6a_ 43 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--LPGSLTHISTDHQGQFVFVGSYNA--------GNVSVTRL 112 (333)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--CSSCCSEEEECTTSSEEEEEETTT--------TEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc--cCCCceEEEEcCCCCEEeecccCC--------Cceeeecc
Confidence 46666667766666677788887765212223322110 012235578999999976654332 34666666
Q ss_pred CCCceEEe---eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE-ecCCCCCccccccCce
Q 004816 229 NGQNIQVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFDPTIVESPTEPK 304 (729)
Q Consensus 229 ~~g~~~~l---t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 304 (729)
+....... ........+..+||||++++..... ...+.+++....+....... ....... .....+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~g--~~p~~i~ 183 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-------QDRICLFTVSDDGHLVAQDPAEVTTVEG--AGPRHMV 183 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEEEECSTT--CCEEEEE
T ss_pred ccccceecccccCCCccceEEEeeecceeeeccccc-------cceeeEEEeccCCcceeeeceeeeeecC--CCccEEE
Confidence 55544333 2233344567899999998877632 34578888763222211111 1111101 2334578
Q ss_pred eCCCCcEEEEEecCCCceEEEEEEcCCCeEEE---eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEE
Q 004816 305 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLA---IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 381 (729)
Q Consensus 305 wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~---l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly 381 (729)
|++++...+......+...++.++........ +...........+ .....+.+ +++.++......+...+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~---d~~~~~~~~~~~~~~~~~ 257 (333)
T d1ri6a_ 184 FHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW---AADIHITP---DGRHLYACDRTASLITVF 257 (333)
T ss_dssp ECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC---EEEEEECT---TSSEEEEEETTTTEEEEE
T ss_pred EeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc---ceeEEEec---ccCceeeecccCCeEEEE
Confidence 99999854444442555666666554443322 2111111111111 11223332 666677666667778888
Q ss_pred EEECCCCceEeecc--CCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 382 ILDDFGHSLSLLDI--PFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 382 ~~d~~~g~~~~lt~--~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
.++.+++..+.... .......+ +++++ .++.+...+..-.+|.+|.++|+++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk-~l~va~~~~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 258 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGK-YLIAAGQKSHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp EECTTSCCEEEEEEEECSSSCCCEEECTTSS-EEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEEEEeCCCCCeeEEEEeCCCC-EEEEEECCCCeEEEEEEECCCCcEEEE
Confidence 88877666544322 12222333 45555 455555444445688899888887654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.12 E-value=2.7e-09 Score=106.12 Aligned_cols=244 Identities=10% Similarity=0.073 Sum_probs=144.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
..+.++.++| |+.+|.... .+++..+|. .. +++....++....++ ...+..++..+++....+..+
T Consensus 32 ~~p~~va~spdG~~l~v~~~---~~~~i~v~d--~~-t~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 98 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANA---HSNDVSIID--TA-TNNVIATVPAGSSPQ-------GVAVSPDGKQVYVTNMASSTL 98 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEG---GGTEEEEEE--TT-TTEEEEEEECSSSEE-------EEEECTTSSEEEEEETTTTEE
T ss_pred CCceEEEEeCCCCEEEEEEC---CCCEEEEEE--CC-CCceeeeeecccccc-------cccccccccccccccccccee
Confidence 3567889999 777876554 235545554 33 122222222211111 122333445666666667788
Q ss_pred EEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeee
Q 004816 168 YKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFP 246 (729)
Q Consensus 168 ~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~ 246 (729)
.+++..+ ++.. .+... .......++|||+++++..... ..+++++..+++..............
T Consensus 99 ~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~dg~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (301)
T d1l0qa2 99 SVIDTTS--NTVAGTVKTG-----KSPLGLALSPDGKKLYVTNNGD--------KTVSVINTVTKAVINTVSVGRSPKGI 163 (301)
T ss_dssp EEEETTT--TEEEEEEECS-----SSEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred eeccccc--ceeeeecccc-----ccceEEEeecCCCeeeeeeccc--------cceeeeeccccceeeecccCCCceEE
Confidence 9999886 5433 33322 2335678999999987765433 46788898887766555555555667
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH 325 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~ 325 (729)
.|+||++.++....+ ...+.+.+.. ..+. ....... .....+.|++||+ +++.... .....|+
T Consensus 164 ~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~--~~~~~~~-----~~~~~~~~~~~g~~~~v~~~~-~~~~~v~ 227 (301)
T d1l0qa2 164 AVTPDGTKVYVANFD-------SMSISVIDTV-TNSV--IDTVKVE-----AAPSGIAVNPEGTKAYVTNVD-KYFNTVS 227 (301)
T ss_dssp EECTTSSEEEEEETT-------TTEEEEEETT-TTEE--EEEEECS-----SEEEEEEECTTSSEEEEEEEC-SSCCEEE
T ss_pred Eeeccccceeeeccc-------cccccccccc-ceee--eeccccc-----CCcceeecccccccccccccc-ceeeeee
Confidence 899999988766532 2335566554 3333 2222222 2345678999999 5554443 4556799
Q ss_pred EEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 326 KWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 326 ~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
++|+.+++.....+..... ..+.|.+ |++++|++...++ .|.++|++++++
T Consensus 228 v~D~~t~~~~~~~~~~~~~---------~~va~sp---dg~~l~va~~~~~--~i~v~D~~t~~~ 278 (301)
T d1l0qa2 228 MIDTGTNKITARIPVGPDP---------AGIAVTP---DGKKVYVALSFCN--TVSVIDTATNTI 278 (301)
T ss_dssp EEETTTTEEEEEEECCSSE---------EEEEECT---TSSEEEEEETTTT--EEEEEETTTTEE
T ss_pred eeecCCCeEEEEEcCCCCE---------EEEEEeC---CCCEEEEEECCCC--eEEEEECCCCeE
Confidence 9999988765433222111 2344443 7777877765555 566679888864
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.12 E-value=1e-08 Score=103.63 Aligned_cols=260 Identities=13% Similarity=0.120 Sum_probs=147.9
Q ss_pred CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC-CCCCcccccccccCCceEEEECC-EEEEEECC--
Q 004816 88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYK-- 163 (729)
Q Consensus 88 ~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~-- 163 (729)
+..+++|.|++.+.|||++.. .+ .|++++.+++ ...... +... . ...+.++.+ .+++....
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~---~g--~I~ri~p~g~-~~~~~~~~~~~-------~--p~gla~~~dG~l~va~~~~~ 103 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVF---EG--NIFKINPETK-EIKRPFVSHKA-------N--PAAIKIHKDGRLFVCYLGDF 103 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETT---TC--EEEEECTTTC-CEEEEEECSSS-------S--EEEEEECTTSCEEEEECTTS
T ss_pred CcCcEeCEECCCCCEEEEECC---CC--EEEEEECCCC-eEEEEEeCCCC-------C--eeEEEECCCCCEEEEecCCC
Confidence 456789999994469999863 34 4788877622 222222 2110 0 112333332 44444322
Q ss_pred --CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC
Q 004816 164 --DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD 241 (729)
Q Consensus 164 --~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~ 241 (729)
.+.++.++..+ +....+..... ...+.++.+++|||+ +++....... ......+|+++.+++..+.+..+..
T Consensus 104 ~~~~~i~~~~~~~--~~~~~~~~~~~-~~~~~nd~~~d~~G~-l~vtd~~~~~--~~~~g~v~~~~~dg~~~~~~~~~~~ 177 (319)
T d2dg1a1 104 KSTGGIFAATENG--DNLQDIIEDLS-TAYCIDDMVFDSKGG-FYFTDFRGYS--TNPLGGVYYVSPDFRTVTPIIQNIS 177 (319)
T ss_dssp SSCCEEEEECTTS--CSCEEEECSSS-SCCCEEEEEECTTSC-EEEEECCCBT--TBCCEEEEEECTTSCCEEEEEEEES
T ss_pred ccceeEEEEcCCC--ceeeeeccCCC-cccCCcceeEEeccc-eeeccccccc--ccCcceeEEEecccceeEEEeeccc
Confidence 23678888776 55544433211 135678899999998 4444322111 1124679999999888888776656
Q ss_pred eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeee---EEecCCCCCccccccCceeCCCCcEEEEEecC
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR---VCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 318 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~---~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~ 318 (729)
.-++++|||||++|++... ...+|++++++.++..... ......... .....++..+||+|++.. .
T Consensus 178 ~pnGia~s~dg~~lyvad~-------~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~--~~PdGl~vD~~G~l~Va~-~- 246 (319)
T d2dg1a1 178 VANGIALSTDEKVLWVTET-------TANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAM-Y- 246 (319)
T ss_dssp SEEEEEECTTSSEEEEEEG-------GGTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEE-E-
T ss_pred eeeeeeeccccceEEEecc-------cCCceEEEEEcCCCceeccccceeeeccCCc--cceeeeeEcCCCCEEEEE-c-
Confidence 6678999999999988763 2346999998744432211 111111100 234567888888755544 3
Q ss_pred CCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEE---CCeEEEEEEECCC
Q 004816 319 NGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ---NGRSYLGILDDFG 387 (729)
Q Consensus 319 ~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~---~g~~~ly~~d~~~ 387 (729)
+...|.++|+++.....+. +.. . +........+.|.+ +...++.++.. .+...||+++...
T Consensus 247 -~~g~V~~~~p~G~~l~~i~~P~~-~---~~~~~~~~~~~~~~---~~~~~~~t~~~~~~~~~g~l~~~~~~~ 311 (319)
T d2dg1a1 247 -GQGRVLVFNKRGYPIGQILIPGR-D---EGHMLRSTHPQFIP---GTNQLIICSNDIEMGGGSMLYTVNGFA 311 (319)
T ss_dssp -TTTEEEEECTTSCEEEEEECTTG-G---GTCSCBCCEEEECT---TSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred -CCCEEEEECCCCcEEEEEeCCCc-C---CCcCceeeeEEEeC---CCCEEEEEcCCCCcCCceeEEEEeCCC
Confidence 3457999998765555554 221 1 11111122444542 44556666543 3556788887643
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=99.11 E-value=2.2e-10 Score=110.00 Aligned_cols=189 Identities=12% Similarity=0.003 Sum_probs=105.8
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
++.++||++||..++ ...|..+++.|. +|.|+.+|++|.+ ...+++.+.++.+. .
T Consensus 15 ~~~~~l~~lhg~~g~--~~~~~~la~~L~--~~~v~~~~~~g~~----------------~~a~~~~~~i~~~~-----~ 69 (230)
T d1jmkc_ 15 DQEQIIFAFPPVLGY--GLMYQNLSSRLP--SYKLCAFDFIEEE----------------DRLDRYADLIQKLQ-----P 69 (230)
T ss_dssp TCSEEEEEECCTTCC--GGGGHHHHHHCT--TEEEEEECCCCST----------------THHHHHHHHHHHHC-----C
T ss_pred CCCCeEEEEcCCCCC--HHHHHHHHHHCC--CCEEeccCcCCHH----------------HHHHHHHHHHHHhC-----C
Confidence 345789999998544 466777888874 7999999998632 12455555555442 3
Q ss_pred CCcEEEEEcChHHHHHHHHHh-C---CCcceEEEEeccccCh--hHHhhh-cchhhhhhhhhhc-----CCh--------
Q 004816 570 EKRLCITGGSAGGYTTLAALA-F---RDTFKAGASLYGVADL--SMLRAE-THKFESRYIDNLV-----GSE-------- 629 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~---~~~~~a~v~~~~~~d~--~~~~~~-~~~~~~~~~~~~~-----~~~-------- 629 (729)
.+++.|+||||||.+|+.++. + ...+..++...+.... ...... ............. ...
T Consensus 70 ~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (230)
T d1jmkc_ 70 EGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQ 149 (230)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGSHHHHHHHHH
T ss_pred CCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhccccccccccHHHHHHHHH
Confidence 467999999999999998886 4 4445555544432110 000000 0000000000000 000
Q ss_pred ---hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC-CcccHHHHHHHHHH
Q 004816 630 ---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR-KAENIKFTLEQQMV 705 (729)
Q Consensus 630 ---~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~-~~~~~~~~~~~~~~ 705 (729)
..+...........+++|+++++|++|..++... ..+.+. ...+++++++++ +|... ..++..+..+.|.+
T Consensus 150 ~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~~~~-~~w~~~---~~~~~~~~~i~g-~H~~ml~~~~~~~va~~I~~ 224 (230)
T d1jmkc_ 150 KTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPEWL-ASWEEA---TTGAYRMKRGFG-THAEMLQGETLDRNAGILLE 224 (230)
T ss_dssp HHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCTTE-ECSGGG---BSSCEEEEECSS-CGGGTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccccccCcceeeeecCCcccchhH-HHHHHh---ccCCcEEEEEcC-CChhhcCCccHHHHHHHHHH
Confidence 0111111223456788999999999999887532 222221 223678999986 89743 33344455555556
Q ss_pred HHH
Q 004816 706 FFA 708 (729)
Q Consensus 706 fl~ 708 (729)
||+
T Consensus 225 ~L~ 227 (230)
T d1jmkc_ 225 FLN 227 (230)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=99.07 E-value=1.3e-09 Score=111.01 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCCCCCCcccc-chhh---hHHHhhCCcEEEEecCCCCCCCchhHHHhh----------ccCCCcccHHHH
Q 004816 490 EKPPLLVKSHGGPTSEARGI-LNLS---IQYWTSRGWAFVDVNYGGSTGYGREFRERL----------LGRWGIVDVNDC 555 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~-~~~~---~~~la~~G~~v~~~d~rGs~g~g~~~~~~~----------~~~~~~~~~~D~ 555 (729)
++-++||++|+..++..... |..+ -+.+--.-|-|+++|..|++ +|.+-.... ..++....+.|.
T Consensus 42 ~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~-~gst~p~s~~p~~~~~~~yg~~FP~~ti~D~ 120 (376)
T d2vata1 42 SRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSP-FGSAGPCSPDPDAEGQRPYGAKFPRTTIRDD 120 (376)
T ss_dssp TSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCS-SSSSSTTSBCTTTC--CBCGGGCCCCCHHHH
T ss_pred CCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCC-cCCCCCCCCCcccccCCcccccCCcchhHHH
Confidence 44689999999754443332 2221 13344456999999998864 222111111 112345578999
Q ss_pred HHHHHHHHhCCCCCCCcE-EEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 556 CSCATFLVGSGKADEKRL-CITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 556 ~~~~~~l~~~~~~d~~ri-~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
+.+-..|++.-. .+|+ +++|+||||+.|+..+. +|++++.+|.+++..
T Consensus 121 v~aq~~ll~~LG--I~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~~ 170 (376)
T d2vata1 121 VRIHRQVLDRLG--VRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSC 170 (376)
T ss_dssp HHHHHHHHHHHT--CCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCS
T ss_pred HHHHHHHHHHhC--cceEEEeecccHHHHHHHHHHHhchHHHhhhccccccc
Confidence 998877777643 3576 68999999999999998 999999999887643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.05 E-value=1.2e-07 Score=97.33 Aligned_cols=303 Identities=9% Similarity=-0.071 Sum_probs=153.5
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECC-------
Q 004816 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK------- 163 (729)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------- 163 (729)
..+.++| |+++|...... ..+...+|.++..+ ++....++.+ ......|++++..+++....
T Consensus 24 ~~~a~spdg~~~~~~~~~~-~~~~~~v~v~D~~t-g~~~~~~~~~--------~~~~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 24 NDEAPGADGRRSYINLPAH-HSAIIQQWVLDAGS-GSILGHVNGG--------FLPNPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred cccccCCCCCEEEEEcccc-cCCCceEEEEECCC-CCEEEEEeCC--------CCccEEEcCCCCEEEEEeecCCccccc
Confidence 4667899 88887765322 34445677777652 3333222222 11134677777777776532
Q ss_pred --CCcEEEEeCCCCCCCCeecCCCCCCCce----eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee
Q 004816 164 --DQRLYKHSIDSKDSSPLPITPDYGEPLV----SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV 237 (729)
Q Consensus 164 --~~~l~~~d~~~~~~~~~~lt~~~~~~~~----~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt 237 (729)
++.|.+||+.+ ++.......+..... ......|+|||+.+++...... ..+.+++..+++.....
T Consensus 94 ~~~~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~-------~~~~~~~~~~~~~~~~~ 164 (373)
T d2madh_ 94 KRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG-------PAVGLVVQGGSSDDQLL 164 (373)
T ss_pred ccceEEEEEECCC--CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC-------CceEEeeccCCeEEEEe
Confidence 35689999987 554332221111001 1144679999998776654332 34566677665443322
Q ss_pred eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec
Q 004816 238 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 317 (729)
Q Consensus 238 ~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~ 317 (729)
. ......++|||+.+++.... ...+.+++.. +++......................+++++.+++....
T Consensus 165 ~---~~~~~~~s~~g~~~~v~~~~-------dg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (373)
T d2madh_ 165 S---SPTCYHIHPGAPSTFYLLCA-------QGGLAKTDHA-GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS 233 (373)
T ss_pred c---cceeEEEecCCCcEEEEEcC-------CCeEEEEEcC-CceeeEEEeeeccccCccceeeeEEECCCceEEEecCC
Confidence 2 22356799999987655532 2348888877 55543222111111000011223445666554444332
Q ss_pred CCCceEEEEEEcCCCeEEEeeccCc---cccCCcccccC-cceeeeeecCCCCEEEEEEEE-------CCeEEEEEEECC
Q 004816 318 KNGFWNLHKWIESNNEVLAIYSLDA---EFSRPLWVFGI-NSYEIIQSHGEKNLIACSYRQ-------NGRSYLGILDDF 386 (729)
Q Consensus 318 ~~g~~~l~~~d~~~g~~~~l~~~~~---~~~~~~w~~~~-~~~~~l~~~~~~~~l~~~s~~-------~g~~~ly~~d~~ 386 (729)
..++.++..++....+..... ......|.+.. ....+.+ ++..+++.... .....++++|..
T Consensus 234 ----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 306 (373)
T d2madh_ 234 ----GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK---SSDGIYLLTSEQSAWKLHAAAKEVTSVTGL 306 (373)
T ss_pred ----ceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec---CCCeEEEecCCCceEEeecCCCeEEEEECC
Confidence 234455555544333221110 01111122111 1122222 44444443322 122467888888
Q ss_pred CCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 387 GHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 387 ~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+++..........+..+ ++|++.++|.....+ ..++++|+.+++.
T Consensus 307 t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~~ 353 (373)
T d2madh_ 307 VGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQ 353 (373)
T ss_pred CCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCE
Confidence 87754333333334444 566666666554433 5689999998874
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.04 E-value=2.2e-08 Score=100.80 Aligned_cols=235 Identities=8% Similarity=-0.005 Sum_probs=140.4
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
+++++++.+++.. ++.++++++++. ...+.++.. ...+...+|||||++|+....+ ..|.++++
T Consensus 24 a~~~~g~~l~~~~--~~~v~i~~~~~~-~~~~~~~~H----~~~v~~~~~sp~g~~latg~~d---------g~i~iwd~ 87 (311)
T d1nr0a1 24 GNTPAGDKIQYCN--GTSVYTVPVGSL-TDTEIYTEH----SHQTTVAKTSPSGYYCASGDVH---------GNVRIWDT 87 (311)
T ss_dssp EECTTSSEEEEEE--TTEEEEEETTCS-SCCEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEES
T ss_pred EEcCCCCEEEEEe--CCEEEEEECCCC-ceeEEEcCC----CCCEEEEEEeCCCCeEeccccC---------ceEeeeee
Confidence 3455667888874 446999999872 334455544 3567888999999987655443 46888898
Q ss_pred CCCce--E-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 229 NGQNI--Q-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 229 ~~g~~--~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
.+++. + .+..........+|+|||+.|+..+.+.. ..+.+++++ +++. ...+.+.. ..+..+.|
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~------~~~~v~~~~-~~~~--~~~l~~h~----~~v~~v~~ 154 (311)
T d1nr0a1 88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE------RFGHVFLFD-TGTS--NGNLTGQA----RAMNSVDF 154 (311)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS------CSEEEEETT-TCCB--CBCCCCCS----SCEEEEEE
T ss_pred eccccccccccccccCcccccccccccccccccccccc------ccccccccc-cccc--cccccccc----cccccccc
Confidence 87653 2 23323445677899999999987763322 226677777 5553 22334443 44567889
Q ss_pred CCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeecc-CccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 306 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 306 spDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
+|||+ ++..... .+ .|.++|..+++....... ...+....|.+ +++ ++++...++...||
T Consensus 155 ~~~~~~~l~sgs~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p------------~~~-~l~~~~~d~~v~~~-- 216 (311)
T d1nr0a1 155 KPSRPFRIISGSD-DN--TVAIFEGPPFKFKSTFGEHTKFVHSVRYNP------------DGS-LFASTGGDGTIVLY-- 216 (311)
T ss_dssp CSSSSCEEEEEET-TS--CEEEEETTTBEEEEEECCCSSCEEEEEECT------------TSS-EEEEEETTSCEEEE--
T ss_pred cccceeeeccccc-cc--ccccccccccccccccccccccccccccCc------------ccc-cccccccccccccc--
Confidence 99998 5554443 34 466678888765554422 22222233332 554 44555566765555
Q ss_pred ECCCCceE-eeccC-------CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 384 DDFGHSLS-LLDIP-------FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 384 d~~~g~~~-~lt~~-------~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+...+... .+... ...|..+ ..+++.+++.++.. ..++++|+.+++.
T Consensus 217 d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D---g~v~iwd~~t~~~ 272 (311)
T d1nr0a1 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD---KTIKIWNVATLKV 272 (311)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTTEE
T ss_pred ccccccccccccccccccccccccccccccCCCCCEEEEEeCC---CeEEEEECCCCcE
Confidence 55555432 22211 2346666 44445555555543 3688888887764
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=9.3e-08 Score=96.99 Aligned_cols=268 Identities=9% Similarity=0.026 Sum_probs=154.6
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
..+..+.++| |+.++ +.. +|...+|..... +....+... ...-+...+.+.+++++ ..+++...++.
T Consensus 52 ~~V~~v~fs~~g~~la-tg~----dg~V~iWd~~~~--~~~~~~~~~----~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVY-TGG----KGCVKVWDISHP--GNKSPVSQL----DCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp SCCCEEEECSSSSEEE-EEC----BSEEEEEETTST--TCCSCSEEE----ECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred CcEEEEEECCCCCEEE-EEE----CCEEEEEEccCC--cccceeEEe----eecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence 4567899999 65554 332 366778876543 111111100 00011222344455433 44556667889
Q ss_pred EEEEeCCCCCCCCee---cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-CCe
Q 004816 167 LYKHSIDSKDSSPLP---ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG-SDF 242 (729)
Q Consensus 167 l~~~d~~~~~~~~~~---lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~-~~~ 242 (729)
|.+|++.. ...+. +... ........|+||+..++....+ ..+.++++.+++......+ ...
T Consensus 121 i~iwd~~~--~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d---------~~i~~~~~~~~~~~~~~~~~~~~ 185 (337)
T d1gxra_ 121 LSIWDLAA--PTPRIKAELTSS----APACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTLVRQFQGHTDG 185 (337)
T ss_dssp EEEEECCC--C--EEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECCCSSC
T ss_pred cccccccc--cccccccccccc----cccccccccccccccccccccc---------ccccccccccccccccccccccc
Confidence 99999875 33322 2222 2334667899999987655443 3588899988876555443 345
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCce
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 322 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~ 322 (729)
....+|+|+|+.++.... ...+.++|+. +++. ..... .. ..+..+.|+|+++++++... .+
T Consensus 186 v~~l~~s~~~~~~~~~~~--------d~~v~i~d~~-~~~~--~~~~~-~~----~~i~~l~~~~~~~~l~~~~~-d~-- 246 (337)
T d1gxra_ 186 ASCIDISNDGTKLWTGGL--------DNTVRSWDLR-EGRQ--LQQHD-FT----SQIFSLGYCPTGEWLAVGME-SS-- 246 (337)
T ss_dssp EEEEEECTTSSEEEEEET--------TSEEEEEETT-TTEE--EEEEE-CS----SCEEEEEECTTSSEEEEEET-TS--
T ss_pred cccccccccccccccccc--------cccccccccc-ccee--ecccc-cc----cceEEEEEcccccccceecc-cc--
Confidence 567899999999887662 3458899988 5653 32332 22 44567889999994444443 34
Q ss_pred EEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEE
Q 004816 323 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN 402 (729)
Q Consensus 323 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~ 402 (729)
.+.++|..+++..........+....|++ +++ ++++...+|.-.| ++..+++..........+..
T Consensus 247 ~i~i~d~~~~~~~~~~~~~~~i~~v~~s~------------~g~-~l~s~s~Dg~i~i--wd~~~~~~~~~~~~~~~v~~ 311 (337)
T d1gxra_ 247 NVEVLHVNKPDKYQLHLHESCVLSLKFAY------------CGK-WFVSTGKDNLLNA--WRTPYGASIFQSKESSSVLS 311 (337)
T ss_dssp CEEEEETTSSCEEEECCCSSCEEEEEECT------------TSS-EEEEEETTSEEEE--EETTTCCEEEEEECSSCEEE
T ss_pred ccccccccccccccccccccccceEEECC------------CCC-EEEEEeCCCeEEE--EECCCCCEEEEccCCCCEEE
Confidence 45666777776655443333333333332 555 4455556676555 47777776544455566776
Q ss_pred e-eeeCCEEEEEEeC
Q 004816 403 I-TLGNDCLFVEGAS 416 (729)
Q Consensus 403 ~-~~~~~~~~~~~~~ 416 (729)
+ ..+++++++.++.
T Consensus 312 ~~~s~d~~~l~t~s~ 326 (337)
T d1gxra_ 312 CDISVDDKYIVTGSG 326 (337)
T ss_dssp EEECTTSCEEEEEET
T ss_pred EEEeCCCCEEEEEeC
Confidence 6 4445555555543
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=99.00 E-value=2.2e-09 Score=106.68 Aligned_cols=160 Identities=14% Similarity=0.069 Sum_probs=98.8
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
..+.| ||++||...+.....+..+.++|+++||.|+.+|++|.+- + ... ...+++...++++.+..
T Consensus 29 ~~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g~g~-~--d~~--------~sae~la~~i~~v~~~~-- 94 (317)
T d1tcaa_ 29 SVSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFML-N--DTQ--------VNTEYMVNAITALYAGS-- 94 (317)
T ss_dssp SCSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTTTC-S--CHH--------HHHHHHHHHHHHHHHHT--
T ss_pred CCCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCCCCC-C--chH--------hHHHHHHHHHHHHHHhc--
Confidence 34456 6778997544444445667899999999999999986432 1 111 22577888899988863
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CC---CcceEEEEeccccChhHHhhh---cchhhhhhhhhhcCCh--hhhhhcCccc
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVADLSMLRAE---THKFESRYIDNLVGSE--KDYYEKSPIN 639 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~---~~~~a~v~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~sp~~ 639 (729)
..+||.|+|||+||.++.+++. +| ++++.+|.+++...-..+... .............+.. +.+....
T Consensus 95 g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~~Gt~~a~~~~~~~~~~pa~~q~~~~s~fl~~L~~~~--- 171 (317)
T d1tcaa_ 95 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDALAVSAPSVWQQTTGSALTTALRNAG--- 171 (317)
T ss_dssp TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHHTTCBCHHHHHTBTTCHHHHHHHHTT---
T ss_pred cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCCCCcccccchhhhhccCchhhhhcCCcHHHHHHHhCC---
Confidence 3478999999999999999888 66 568999988876432222110 0000000001111110 1111110
Q ss_pred ccCCCCCCEEEEEeCCCCCCChHHHHH
Q 004816 640 FVDKFSCPIILFQGLEDKVVPPDQARK 666 (729)
Q Consensus 640 ~~~~i~~PvL~i~G~~D~~vp~~~~~~ 666 (729)
...-.+|.+.|++..|.+|.+.++..
T Consensus 172 -~~~~~V~~t~I~s~~D~iV~P~~~~~ 197 (317)
T d1tcaa_ 172 -GLTQIVPTTNLYSATDEIVQPQVSNS 197 (317)
T ss_dssp -TTBCSSCEEEEECTTCSSSCCCCSSS
T ss_pred -CCCCCCCEEEEecCCCcccCccccch
Confidence 01123689999999999998865543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.97 E-value=1.9e-07 Score=93.67 Aligned_cols=251 Identities=8% Similarity=-0.039 Sum_probs=140.5
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcEE
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~ 168 (729)
+..+..+| |+.+++.. ++...+|..+.. ....++.. |.....+..++++ ..+++...++.|.
T Consensus 20 ~~~~a~~~~g~~l~~~~-----~~~v~i~~~~~~---~~~~~~~~--------H~~~v~~~~~sp~g~~latg~~dg~i~ 83 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCN-----GTSVYTVPVGSL---TDTEIYTE--------HSHQTTVAKTSPSGYYCASGDVHGNVR 83 (311)
T ss_dssp CCCCEECTTSSEEEEEE-----TTEEEEEETTCS---SCCEEECC--------CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEEEEEcCCCCEEEEEe-----CCEEEEEECCCC---ceeEEEcC--------CCCCEEEEEEeCCCCeEeccccCceEe
Confidence 34578899 88888864 233344444322 23223211 1122344444433 4556666788999
Q ss_pred EEeCCCCCCCCe---ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeee
Q 004816 169 KHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYA 244 (729)
Q Consensus 169 ~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~ 244 (729)
+|++.+ +... .+... ...+...+|+|||+.|+....... ..+.++++++++.. .+........
T Consensus 84 iwd~~~--~~~~~~~~~~~~----~~~v~~v~~s~d~~~l~~~~~~~~-------~~~~v~~~~~~~~~~~l~~h~~~v~ 150 (311)
T d1nr0a1 84 IWDTTQ--TTHILKTTIPVF----SGPVKDISWDSESKRIAAVGEGRE-------RFGHVFLFDTGTSNGNLTGQARAMN 150 (311)
T ss_dssp EEESSS--TTCCEEEEEECS----SSCEEEEEECTTSCEEEEEECCSS-------CSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred eeeeec--cccccccccccc----cCcccccccccccccccccccccc-------ccccccccccccccccccccccccc
Confidence 999986 4321 22222 245678899999999877765332 23566788876653 3443445567
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 324 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l 324 (729)
..+|+|||+.++.+...+ ..|.++|+. +++. .....+.. ..+..+.|+|||++++.... .+ .+
T Consensus 151 ~v~~~~~~~~~l~sgs~d-------~~i~i~d~~-~~~~--~~~~~~~~----~~i~~v~~~p~~~~l~~~~~-d~--~v 213 (311)
T d1nr0a1 151 SVDFKPSRPFRIISGSDD-------NTVAIFEGP-PFKF--KSTFGEHT----KFVHSVRYNPDGSLFASTGG-DG--TI 213 (311)
T ss_dssp EEEECSSSSCEEEEEETT-------SCEEEEETT-TBEE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TS--CE
T ss_pred cccccccceeeecccccc-------ccccccccc-cccc--cccccccc----ccccccccCccccccccccc-cc--cc
Confidence 789999999755444222 348889987 5553 34444444 45677899999995444443 34 45
Q ss_pred EEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eec
Q 004816 325 HKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLD 394 (729)
Q Consensus 325 ~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt 394 (729)
.++|..+++........... ...-......+.|.+ +++. +++...+|..+| +|..+++.. .+.
T Consensus 214 ~~~d~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~s~---~~~~-l~tgs~Dg~v~i--wd~~t~~~~~~l~ 277 (311)
T d1nr0a1 214 VLYNGVDGTKTGVFEDDSLK-NVAHSGSVFGLTWSP---DGTK-IASASADKTIKI--WNVATLKVEKTIP 277 (311)
T ss_dssp EEEETTTCCEEEECBCTTSS-SCSSSSCEEEEEECT---TSSE-EEEEETTSEEEE--EETTTTEEEEEEE
T ss_pred cccccccccccccccccccc-cccccccccccccCC---CCCE-EEEEeCCCeEEE--EECCCCcEEEEEE
Confidence 56677776544333211000 000000122345543 5554 445666776544 477777643 343
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.96 E-value=2.4e-08 Score=103.02 Aligned_cols=247 Identities=5% Similarity=-0.171 Sum_probs=133.5
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC-CCCcceEEEEEEcCCCceEEeeeCC----
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-ALNSTTEIVAIALNGQNIQVLVSGS---- 240 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~-~~~~~~~l~~~dl~~g~~~~lt~~~---- 240 (729)
+||++|.++ ++........ ....++|||||+.|++........ .......|.++|..+++.......+
T Consensus 47 ~~~~~d~~~--~~~~~~~~~~-----~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~ 119 (368)
T d1mdah_ 47 ENWVSCAGC--GVTLGHSLGA-----FLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTT--TEEEEEEEEC-----TTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEeCCC--CcEEEEEeCC-----CCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce
Confidence 799999988 6554443331 113578999999988775422110 0111246999999998875443211
Q ss_pred ----CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc-cccccCceeCCCCc-EEEE
Q 004816 241 ----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI-VESPTEPKWSSKGE-LFFV 314 (729)
Q Consensus 241 ----~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~-~~~~~~~~wspDG~-l~~~ 314 (729)
.....++||||||+|++...+ ...++++|+. +++.............. ......+.+++||+ +++.
T Consensus 120 ~~~g~~p~~~a~SpDGk~l~va~~~-------~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~ 191 (368)
T d1mdah_ 120 FSVGPRVHIIGNCASSACLLFFLFG-------SSAAAGLSVP-GASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECS-------SSCEEEEEET-TTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEE
T ss_pred ecccCCccceEECCCCCEEEEEeCC-------CCeEEEEECC-CCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEE
Confidence 112357899999999877633 2348889998 67653332222211000 01112345677887 4443
Q ss_pred EecCCCc---------------------------------eEEEEEEcCCCeEEEeeccCcc---ccCCccccc-Cccee
Q 004816 315 TDRKNGF---------------------------------WNLHKWIESNNEVLAIYSLDAE---FSRPLWVFG-INSYE 357 (729)
Q Consensus 315 ~~~~~g~---------------------------------~~l~~~d~~~g~~~~l~~~~~~---~~~~~w~~~-~~~~~ 357 (729)
... .+. ..++.++..+++...+...... .....|.+. ...+.
T Consensus 192 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a 270 (368)
T d1mdah_ 192 LAA-APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp CCS-SCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred ecC-CceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEE
Confidence 322 110 1234444444444433211110 001223332 22344
Q ss_pred eeeecCCCCEEEEEEEEC------CeEEEEEEECCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 358 IIQSHGEKNLIACSYRQN------GRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 358 ~l~~~~~~~~l~~~s~~~------g~~~ly~~d~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
+.+ +++.+|+..... +..+|+++|.++++...-......+..+ ++|++.++|.+...+ ..|+++|..
T Consensus 271 ~~~---~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~--~~v~v~D~~ 345 (368)
T d1mdah_ 271 KLK---NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT--EVLDIYDAA 345 (368)
T ss_dssp EET---TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT--TEEEEEESS
T ss_pred EcC---CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCC--CeEEEEECC
Confidence 443 667777766543 3467999999988743222222233334 556666666655433 479999999
Q ss_pred CCcc
Q 004816 430 DHKL 433 (729)
Q Consensus 430 ~~~~ 433 (729)
+++.
T Consensus 346 tgk~ 349 (368)
T d1mdah_ 346 SDQD 349 (368)
T ss_dssp SCEE
T ss_pred CCCE
Confidence 8874
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=3.2e-07 Score=92.09 Aligned_cols=242 Identities=10% Similarity=-0.000 Sum_probs=121.6
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCeecC--CCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC--Cc
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLPIT--PDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QN 232 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~lt--~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~--g~ 232 (729)
+++....+++|++|+++.. +..+.+. .. +......+|||||++|+...... ..|.+++++. ..
T Consensus 6 v~v~~~~~~~I~v~~~~~~-~~l~~~~~~~~----~~~v~~la~spDG~~L~v~~~~d--------~~i~~~~i~~~~~~ 72 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHE-GALTLTQVVDV----PGQVQPMVVSPDKRYLYVGVRPE--------FRVLAYRIAPDDGA 72 (333)
T ss_dssp EEEEEGGGTEEEEEEECTT-SCEEEEEEEEC----SSCCCCEEECTTSSEEEEEETTT--------TEEEEEEECTTTCC
T ss_pred EEEECCCCCcEEEEEEcCC-CCeEEEEEEcC----CCCEeEEEEeCCCCEEEEEECCC--------CeEEEEEEeCCCCc
Confidence 3445556778999988652 4334332 33 23357889999999986554322 3455555543 44
Q ss_pred eEEeee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 233 IQVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 233 ~~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
.+.... ......+.+|||||++|+....+ ...+.+++.+ .............. ..+..+.++|||+
T Consensus 73 ~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~-------~~~v~~~~~~-~~~~~~~~~~~~~~----~~~~~v~~s~d~~ 140 (333)
T d1ri6a_ 73 LTFAAESALPGSLTHISTDHQGQFVFVGSYN-------AGNVSVTRLE-DGLPVGVVDVVEGL----DGCHSANISPDNR 140 (333)
T ss_dssp EEEEEEEECSSCCSEEEECTTSSEEEEEETT-------TTEEEEEEEE-TTEEEEEEEEECCC----TTBCCCEECTTSS
T ss_pred EEEeeecccCCCceEEEEcCCCCEEeecccC-------CCceeeeccc-cccceecccccCCC----ccceEEEeeecce
Confidence 443322 22334567899999999876532 3447777766 44432222223332 4556789999999
Q ss_pred EEEEEecCCCceEEEEEEcCCCeEEEe-eccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 311 LFFVTDRKNGFWNLHKWIESNNEVLAI-YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 311 l~~~~~~~~g~~~l~~~d~~~g~~~~l-~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
.++.... +...+..++..+...... ....... +. ......+.|.+ ++..++......+...++.++.....
T Consensus 141 ~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~--~~-g~~p~~i~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~ 212 (333)
T d1ri6a_ 141 TLWVPAL--KQDRICLFTVSDDGHLVAQDPAEVTT--VE-GAGPRHMVFHP---NEQYAYCVNELNSSVDVWELKDPHGN 212 (333)
T ss_dssp EEEEEEG--GGTEEEEEEECTTSCEEEEEEEEEEC--ST-TCCEEEEEECT---TSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred eeecccc--ccceeeEEEeccCCcceeeeceeeee--ec-CCCccEEEEec---cceeEEeeccccCceEEEeecccccc
Confidence 4444443 223455555544321111 1000000 00 00112234442 55566666555666667766555444
Q ss_pred eEee------ccCC---cceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 390 LSLL------DIPF---TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 390 ~~~l------t~~~---~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
.... .... ...... ...++..++..........+|.++.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~ 264 (333)
T d1ri6a_ 213 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS 264 (333)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred eeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCC
Confidence 3221 1111 111222 3334444555554444445666654444
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.92 E-value=3.3e-08 Score=99.40 Aligned_cols=270 Identities=11% Similarity=0.050 Sum_probs=146.1
Q ss_pred hccCCccCceEEcCCCcEEEEeecCC----CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEE
Q 004816 85 SGASKRLGGTAVDGHGRLIWLESRPT----EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS 160 (729)
Q Consensus 85 ~~~~~~~~~~~~~pg~~~~~~~~~~~----~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (729)
...-..+++|.|+|.+.+|+++.... ..+ .|++++..+ +.. ..+..+ ........+.+..+..+++.+ |+
T Consensus 14 ~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g--~I~r~d~~~-~~~-~~~~~~-~~~~~~g~P~Gl~~~~dg~~l-~v 87 (314)
T d1pjxa_ 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAG--EILRIDLKT-GKK-TVICKP-EVNGYGGIPAGCQCDRDANQL-FV 87 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECC--EEEEECTTT-CCE-EEEECC-EETTEECCEEEEEECSSSSEE-EE
T ss_pred ecCCCCCeEeEEeCCCCEEEEECccccccccCC--EEEEEECCC-CcE-EEEECC-ccccCCCcceeEEEeCCCCEE-EE
Confidence 33345678999999667998865321 123 378887762 222 222111 000000001122222233344 44
Q ss_pred ECCCCcEEEEeCCCCCCCCeecCCCCCCCce-eeecceecCCCCEEEEEEeccC-------CCCCCcceEEEEEEcCCCc
Q 004816 161 NYKDQRLYKHSIDSKDSSPLPITPDYGEPLV-SYADGIFDPRFNRYVTVREDRR-------QDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 161 ~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~-~~~~~~~SPdG~~l~~~~~~~~-------~~~~~~~~~l~~~dl~~g~ 232 (729)
.+....|.+++.++ +....+....+.... ..++.+++|||+ |+++..... .........||+++.++ +
T Consensus 88 ad~~~~i~~~~~~g--~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~ 163 (314)
T d1pjxa_ 88 ADMRLGLLVVQTDG--TFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q 163 (314)
T ss_dssp EETTTEEEEEETTS--CEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C
T ss_pred EECCCeEEEEeCCC--cEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecC-c
Confidence 44556799999886 443333322211112 247789999998 344421110 01112346799999875 5
Q ss_pred eEEeeeCCCeeeeeeeCCCCC----eEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 233 IQVLVSGSDFYAFPRMDPRGE----RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 233 ~~~lt~~~~~~~~~~~SPDG~----~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
...+..+...-++.+|+||++ +|++... ....|+.+|++.++.+...+.+......-......+++..|
T Consensus 164 ~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~-------~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~ 236 (314)
T d1pjxa_ 164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAET-------PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236 (314)
T ss_dssp EEEEEEEESSEEEEEEEECTTSCEEEEEEEET-------TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred eeEeeCCcceeeeeEECCCCCcceeEEEEEee-------cccceEEeeccCccccceeeEEEEccccccccceeeEEecC
Confidence 555555545557889999876 5655542 24569999987556665554443322000023456788889
Q ss_pred CcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
|+||+.. . +..+|+++|+++++.......... ....+.|-+ +++.||++....| .||++++.-
T Consensus 237 GnlyVa~-~--~~g~I~~~dp~~g~~~~~i~~p~~--------~~t~~afg~---d~~~lyVt~~~~g--~i~~~~~~~ 299 (314)
T d1pjxa_ 237 NNLLVAN-W--GSSHIEVFGPDGGQPKMRIRCPFE--------KPSNLHFKP---QTKTIFVTEHENN--AVWKFEWQR 299 (314)
T ss_dssp CCEEEEE-E--TTTEEEEECTTCBSCSEEEECSSS--------CEEEEEECT---TSSEEEEEETTTT--EEEEEECSS
T ss_pred CcEEEEE-c--CCCEEEEEeCCCCEEEEEEECCCC--------CEEEEEEeC---CCCEEEEEECCCC--cEEEEECCC
Confidence 9865544 3 345799999998875433221110 112344543 6667888765444 677777543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.7e-07 Score=93.46 Aligned_cols=242 Identities=9% Similarity=-0.011 Sum_probs=139.8
Q ss_pred cCCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCC-CCCCceeeecceecCCCCEEEEEEeccCCCCCCcceE
Q 004816 145 YGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 145 ~~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~-~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~ 222 (729)
....+..++++ +.+++.. ++.|.+||+..+ +....+... .......+...+|+|||+.|+....+ ..
T Consensus 52 ~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~-~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d---------g~ 120 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHP-GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA---------ST 120 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTST-TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---------SE
T ss_pred CcEEEEEECCCCCEEEEEE-CCEEEEEEccCC-cccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc---------cc
Confidence 34455555543 3444443 678999999762 222211110 00112446788999999987765543 46
Q ss_pred EEEEEcCCCceEE---eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 223 IVAIALNGQNIQV---LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 223 l~~~dl~~g~~~~---lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
|.++|+.....+. +...........|+||+..|+... . ...+.++++. +++. ........ ..
T Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~-------d~~i~~~~~~-~~~~--~~~~~~~~----~~ 185 (337)
T d1gxra_ 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-S-------DGNIAVWDLH-NQTL--VRQFQGHT----DG 185 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-T-------TSCEEEEETT-TTEE--EEEECCCS----SC
T ss_pred cccccccccccccccccccccccccccccccccccccccc-c-------cccccccccc-cccc--cccccccc----cc
Confidence 8888987654332 233334456678999999887655 2 2348889987 6654 33334433 44
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEE
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 379 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ 379 (729)
+..+.|+++++.++.... .+ .+.++|..+++..........+.. +.|.+ +++.+ ++...++...
T Consensus 186 v~~l~~s~~~~~~~~~~~-d~--~v~i~d~~~~~~~~~~~~~~~i~~---------l~~~~---~~~~l-~~~~~d~~i~ 249 (337)
T d1gxra_ 186 ASCIDISNDGTKLWTGGL-DN--TVRSWDLREGRQLQQHDFTSQIFS---------LGYCP---TGEWL-AVGMESSNVE 249 (337)
T ss_dssp EEEEEECTTSSEEEEEET-TS--EEEEEETTTTEEEEEEECSSCEEE---------EEECT---TSSEE-EEEETTSCEE
T ss_pred cccccccccccccccccc-cc--cccccccccceeecccccccceEE---------EEEcc---ccccc-ceeccccccc
Confidence 567889999984444433 23 466678888765444333322222 23332 44444 4555566555
Q ss_pred EEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 380 LGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 380 ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+ ++..+++..........+..+ ..+++.+++.++.. ..++.++...++.
T Consensus 250 i--~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~D---g~i~iwd~~~~~~ 299 (337)
T d1gxra_ 250 V--LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD---NLLNAWRTPYGAS 299 (337)
T ss_dssp E--EETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCCE
T ss_pred c--ccccccccccccccccccceEEECCCCCEEEEEeCC---CeEEEEECCCCCE
Confidence 4 477777766665556667777 44455555555533 4677888877753
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.84 E-value=6.1e-07 Score=89.89 Aligned_cols=153 Identities=13% Similarity=0.027 Sum_probs=92.2
Q ss_pred EEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 158 IFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
+++...+++|.++|+++ ++.. .|..... ......++|||||++|+.+.... ..|+++|+++++...-
T Consensus 4 ~vt~~~d~~v~v~D~~s--~~~~~~i~~~~~--~~~~~~i~~spDg~~l~v~~~~~--------~~v~v~D~~t~~~~~~ 71 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEK--MAVDKVITIADA--GPTPMVPMVAPGGRIAYATVNKS--------ESLVKIDLVTGETLGR 71 (337)
T ss_dssp EEEEETTTEEEEEETTT--TEEEEEEECTTC--TTCCCCEEECTTSSEEEEEETTT--------TEEEEEETTTCCEEEE
T ss_pred EEEEcCCCEEEEEECCC--CeEEEEEECCCC--CCCccEEEECCCCCEEEEEECCC--------CeEEEEECCCCcEEEE
Confidence 44555678999999987 5433 3332210 23346789999999865543222 5799999999887543
Q ss_pred eeCC------CeeeeeeeCCCCCeEEEEEecCCCCCC----CCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 237 VSGS------DFYAFPRMDPRGERMAWIEWHHPNMPW----DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 237 t~~~------~~~~~~~~SPDG~~la~~~~~~~~~~~----~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
.... ....+..|||||++++..........+ ....+.++|.. +++. ...+... ..+..+.|+
T Consensus 72 ~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~--~~~~~~~-----~~~~~~~~s 143 (337)
T d1pbyb_ 72 IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSR--RKAFEAP-----RQITMLAWA 143 (337)
T ss_dssp EECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEE--EEEEECC-----SSCCCEEEC
T ss_pred EecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc-CCeE--EEecccc-----CCceEEEEc
Confidence 3211 123467899999999877644322212 23467888887 5654 2233322 345678999
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEE
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
|||+.++.... .+..+|..+++..
T Consensus 144 ~dg~~l~~~~~-----~~~~~d~~~~~~~ 167 (337)
T d1pbyb_ 144 RDGSKLYGLGR-----DLHVMDPEAGTLV 167 (337)
T ss_dssp TTSSCEEEESS-----SEEEEETTTTEEE
T ss_pred CCCCEEEEEcC-----CcceeeeecCcEE
Confidence 99994444332 1334566555433
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.82 E-value=3e-07 Score=93.40 Aligned_cols=290 Identities=11% Similarity=-0.012 Sum_probs=156.2
Q ss_pred EcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEEC---------CCC
Q 004816 96 VDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNY---------KDQ 165 (729)
Q Consensus 96 ~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~ 165 (729)
.+| ++++|...... ......+|.++.++ |+....++.+ .....+|+++++.|++... .++
T Consensus 9 ~spdg~~~~v~~~~~-~~~~~~v~v~D~~t-g~~~~~~~~g--------~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 9 PAPDARRVYVNDPAH-FAAVTQQFVIDGEA-GRVIGMIDGG--------FLPNPVVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp CCCCTTEEEEEECGG-GCSSEEEEEEETTT-TEEEEEEEEC--------SSCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred eCCCCCEEEEEeccc-CCCcCeEEEEECCC-CcEEEEEECC--------CCCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence 467 88887665322 23445677777662 3332222211 0012345555666666542 235
Q ss_pred cEEEEeCCCCCCCCee-cCCCCCC---CceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC
Q 004816 166 RLYKHSIDSKDSSPLP-ITPDYGE---PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD 241 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~-lt~~~~~---~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~ 241 (729)
.|++||+.+ ++... +...... .........|||||+++++..... ...+++++..+++.........
T Consensus 79 ~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 149 (355)
T d2bbkh_ 79 YVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-------APAVGVVDLEGKAFKRMLDVPD 149 (355)
T ss_dssp EEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS-------SCEEEEEETTTTEEEEEEECCS
T ss_pred EEEEEECCC--CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC-------CceeeeeecCCCcEeeEEecCC
Confidence 799999987 55432 2111000 011224568999999987654332 2468888998887654433221
Q ss_pred --------eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EE
Q 004816 242 --------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF 312 (729)
Q Consensus 242 --------~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~ 312 (729)
......+++||+.+++..... ..+.+.+.. .... ... .....+.+++++. ++
T Consensus 150 ~~~~~~~~~~~~~~~~~dg~~~~v~~~~~-------~~~~~~~~~-~~~~-------~~~----~~~~~~~~~~~~~~~~ 210 (355)
T d2bbkh_ 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTE-------GTPEITHTE-VFHP-------EDE----FLINHPAYSQKAGRLV 210 (355)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEECCSS-------SCCEEEECC-CCSC-------TTS----CBCSCCEEETTTTEEE
T ss_pred cceEeecCCcceEEEcCCCCEEEEEecCC-------CeEEEEecc-cccc-------eec----ceeeeccccCCCCeEE
Confidence 112346889998776554222 113333433 1111 111 2234566777776 66
Q ss_pred EEEecCCCceEEEEEEcCCCeEEEeeccCc---cccCCccccc-CcceeeeeecCCCCEEEEEEEEC-------CeEEEE
Q 004816 313 FVTDRKNGFWNLHKWIESNNEVLAIYSLDA---EFSRPLWVFG-INSYEIIQSHGEKNLIACSYRQN-------GRSYLG 381 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~---~~~~~~w~~~-~~~~~~l~~~~~~~~l~~~s~~~-------g~~~ly 381 (729)
+.... ..+++++..+++...+..... ......+.+. ...+.+.+ ++..+++..... +...|+
T Consensus 211 ~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~v~ 283 (355)
T d2bbkh_ 211 WPTYT----GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR---ALDRIYLLVDQRDEWRHKTASRFVV 283 (355)
T ss_dssp EEBTT----SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET---TTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred EecCC----CeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC---CCCeEEEEeccCCceeecCCCCeEE
Confidence 66433 357788888877655542211 1111223222 12344443 777777776643 346899
Q ss_pred EEECCCCceE-eeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 382 ILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 382 ~~d~~~g~~~-~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.+|..+++.. .+..+ ..+..+ +++++.+++.++..+ ..|+++|+++++.
T Consensus 284 v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d--~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 284 VLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGD--KTLYIHDAESGEE 335 (355)
T ss_dssp EEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTT--TEEEEEETTTCCE
T ss_pred EEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCC--CEEEEEECCCCCE
Confidence 9999887754 33322 223344 556666666555433 5799999998874
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.82 E-value=4.9e-07 Score=95.09 Aligned_cols=201 Identities=10% Similarity=-0.039 Sum_probs=117.7
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEEEeCCCCCCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSS 178 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~ 178 (729)
.+.++++..+ +.|+..||-... ++....++.+.. .....|+++++.++ +...++.+.++|+.+ ++
T Consensus 30 ~~~~~~v~~~--d~g~v~v~D~~t---~~v~~~~~~g~~-------~~~v~fSpDG~~l~-~~s~dg~v~~~d~~t--~~ 94 (432)
T d1qksa2 30 LENLFSVTLR--DAGQIALIDGST---YEIKTVLDTGYA-------VHISRLSASGRYLF-VIGRDGKVNMIDLWM--KE 94 (432)
T ss_dssp GGGEEEEEET--TTTEEEEEETTT---CCEEEEEECSSC-------EEEEEECTTSCEEE-EEETTSEEEEEETTS--SS
T ss_pred CCcEEEEEEc--CCCEEEEEECCC---CcEEEEEeCCCC-------eeEEEECCCCCEEE-EEcCCCCEEEEEeeC--CC
Confidence 4556655544 356656664322 233333322211 11335666666664 445678899999987 54
Q ss_pred Cee---cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC------------Cee
Q 004816 179 PLP---ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS------------DFY 243 (729)
Q Consensus 179 ~~~---lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~------------~~~ 243 (729)
.+. +....+ ...-...+.|||||++|+...... ..+.++|.+++++....... ...
T Consensus 95 ~~~~~~i~~~~~-~~~~~~s~~~SpDG~~l~vs~~~~--------~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
T d1qksa2 95 PTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWP--------PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV 165 (432)
T ss_dssp CCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEET--------TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred ceEEEEEecCCC-CCCeEEecccCCCCCEEEEEcCCC--------CeEEEEeCccccceeeeccCCccccceeccCCCce
Confidence 332 222210 112235667999999986665443 56899999999876654321 122
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceE
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 323 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~ 323 (729)
....+||||+.+++...+ ..++++++.. +++......+... ..+..+.++|||+.++.... +...
T Consensus 166 ~~v~~s~dg~~~~vs~~~-------~~~i~~~d~~-~~~~~~~~~i~~g-----~~~~~~~~spdg~~~~va~~--~~~~ 230 (432)
T d1qksa2 166 AAILASHYRPEFIVNVKE-------TGKILLVDYT-DLNNLKTTEISAE-----RFLHDGGLDGSHRYFITAAN--ARNK 230 (432)
T ss_dssp EEEEECSSSSEEEEEETT-------TTEEEEEETT-CSSEEEEEEEECC-----SSEEEEEECTTSCEEEEEEG--GGTE
T ss_pred eEEEECCCCCEEEEEEcc-------CCeEEEEEcc-CCCcceEEEEccc-----CccccceECCCCCEEEEecc--ccce
Confidence 345789999987766532 3458999987 5554333333322 34457889999994444443 3346
Q ss_pred EEEEEcCCCeEEEee
Q 004816 324 LHKWIESNNEVLAIY 338 (729)
Q Consensus 324 l~~~d~~~g~~~~l~ 338 (729)
+..+|.++++.....
T Consensus 231 v~v~d~~~~~~~~~~ 245 (432)
T d1qksa2 231 LVVIDTKEGKLVAIE 245 (432)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEeecccceEEEEe
Confidence 777888888766554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.82 E-value=6.9e-08 Score=101.87 Aligned_cols=197 Identities=6% Similarity=-0.104 Sum_probs=113.1
Q ss_pred EEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-
Q 004816 158 IFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV- 235 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~- 235 (729)
+.+...++.|.++|.++ ++.. .+..+ ......+|||||++++.... . ..+.++|+++++.+.
T Consensus 35 ~v~~~d~g~v~v~D~~t--~~v~~~~~~g-----~~~~~v~fSpDG~~l~~~s~-d--------g~v~~~d~~t~~~~~~ 98 (432)
T d1qksa2 35 SVTLRDAGQIALIDGST--YEIKTVLDTG-----YAVHISRLSASGRYLFVIGR-D--------GKVNMIDLWMKEPTTV 98 (432)
T ss_dssp EEEETTTTEEEEEETTT--CCEEEEEECS-----SCEEEEEECTTSCEEEEEET-T--------SEEEEEETTSSSCCEE
T ss_pred EEEEcCCCEEEEEECCC--CcEEEEEeCC-----CCeeEEEECCCCCEEEEEcC-C--------CCEEEEEeeCCCceEE
Confidence 45666778999999998 5543 44333 34577899999999765432 2 468899998876433
Q ss_pred --eeeC---CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCC---Ccc--ccccCcee
Q 004816 236 --LVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP---TIV--ESPTEPKW 305 (729)
Q Consensus 236 --lt~~---~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~---~~~--~~~~~~~w 305 (729)
+..+ .+....+.|||||++|+..... ...+.++|.+ +++............ ... .....+.+
T Consensus 99 ~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~-------~~~v~i~d~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (432)
T d1qksa2 99 AEIKIGSEARSIETSKMEGWEDKYAIAGAYW-------PPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 170 (432)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEE-------TTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred EEEecCCCCCCeEEecccCCCCCEEEEEcCC-------CCeEEEEeCc-cccceeeeccCCccccceeccCCCceeEEEE
Confidence 2222 2334567899999998766633 2458999988 676532221111000 000 11122467
Q ss_pred CCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 306 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 306 spDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
||||+ +++.... ...++.++..+++...+..... +. ....+.|.+ +++.++..+...+ .+..++
T Consensus 171 s~dg~~~~vs~~~---~~~i~~~d~~~~~~~~~~~i~~--g~-----~~~~~~~sp---dg~~~~va~~~~~--~v~v~d 235 (432)
T d1qksa2 171 SHYRPEFIVNVKE---TGKILLVDYTDLNNLKTTEISA--ER-----FLHDGGLDG---SHRYFITAANARN--KLVVID 235 (432)
T ss_dssp CSSSSEEEEEETT---TTEEEEEETTCSSEEEEEEEEC--CS-----SEEEEEECT---TSCEEEEEEGGGT--EEEEEE
T ss_pred CCCCCEEEEEEcc---CCeEEEEEccCCCcceEEEEcc--cC-----ccccceECC---CCCEEEEeccccc--eEEEee
Confidence 88887 4444332 3467777877765444432110 00 112344543 6776766654333 566677
Q ss_pred CCCCceEee
Q 004816 385 DFGHSLSLL 393 (729)
Q Consensus 385 ~~~g~~~~l 393 (729)
.++++....
T Consensus 236 ~~~~~~~~~ 244 (432)
T d1qksa2 236 TKEGKLVAI 244 (432)
T ss_dssp TTTTEEEEE
T ss_pred cccceEEEE
Confidence 777765433
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.80 E-value=1.2e-06 Score=86.39 Aligned_cols=269 Identities=10% Similarity=-0.010 Sum_probs=138.6
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
..+..++|+| ++.+ .+.. .++...+|....+ +....+... +...+.+..++++.-+++...++.+
T Consensus 13 ~~V~~l~~s~dg~~l-~s~s---~Dg~v~vWd~~~~---~~~~~~~~~-------h~~~v~~v~~~~~g~~~~~~~d~~v 78 (299)
T d1nr0a2 13 KAITALSSSADGKTL-FSAD---AEGHINSWDISTG---ISNRVFPDV-------HATMITGIKTTSKGDLFTVSWDDHL 78 (299)
T ss_dssp SCEEEEEECTTSSEE-EEEE---TTSCEEEEETTTC---CEEECSSCS-------CSSCEEEEEECTTSCEEEEETTTEE
T ss_pred CCcEEEEECCCCCEE-EEEc---CCCeEEEEECCCC---cEEEEEcCC-------CCCcEEEEEeeccceeecccceeeE
Confidence 3467889999 5544 3433 4577778865433 333333221 1112334444444223344457788
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPR 247 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~ 247 (729)
.+++..+ .....................|+|||+.++.... ..+.+++. ++...+... ......+
T Consensus 79 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~----------~~i~~~~~--~~~~~~~~~-~~~~~~~ 143 (299)
T d1nr0a2 79 KVVPAGG--SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY----------KHIAIYSH--GKLTEVPIS-YNSSCVA 143 (299)
T ss_dssp EEECSSS--SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES----------SEEEEEET--TEEEEEECS-SCEEEEE
T ss_pred EEeccCC--cccccccccccccccccccccccccccccccccc----------cccccccc--ccccccccc-ccccccc
Confidence 8888765 3222111110000123456789999997665543 24666664 333333222 2345578
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEE
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKW 327 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~ 327 (729)
|+|||+.|+... ....|.++|+. +++........ .. ..+..+.|+||+++++.... .+ .|.++
T Consensus 144 ~s~~~~~l~~g~--------~dg~i~~~d~~-~~~~~~~~~~~-~~----~~i~~~~~~~~~~~l~~~~~-d~--~i~~~ 206 (299)
T d1nr0a2 144 LSNDKQFVAVGG--------QDSKVHVYKLS-GASVSEVKTIV-HP----AEITSVAFSNNGAFLVATDQ-SR--KVIPY 206 (299)
T ss_dssp ECTTSCEEEEEE--------TTSEEEEEEEE-TTEEEEEEEEE-CS----SCEEEEEECTTSSEEEEEET-TS--CEEEE
T ss_pred cccccccccccc--------ccccccccccc-ccccccccccc-cc----cccccccccccccccccccc-cc--ccccc
Confidence 999999888655 23459999998 66654333333 22 45567899999995444444 34 46677
Q ss_pred EcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee--cc--CCcceEEe
Q 004816 328 IESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL--DI--PFTDIDNI 403 (729)
Q Consensus 328 d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l--t~--~~~~v~~~ 403 (729)
|..++..............+ ...+.|.+ ++. ++++...+|...|| ++.++....+ .. ....+..+
T Consensus 207 ~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~---~~~-~l~sgs~dg~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~ 275 (299)
T d1nr0a2 207 SVANNFELAHTNSWTFHTAK-----VACVSWSP---DNV-RLATGSLDNSVIVW--NMNKPSDHPIIIKGAHAMSSVNSV 275 (299)
T ss_dssp EGGGTTEESCCCCCCCCSSC-----EEEEEECT---TSS-EEEEEETTSCEEEE--ETTCTTSCCEEETTSSTTSCEEEE
T ss_pred cccccccccccccccccccc-----cccccccc---ccc-ceEEEcCCCEEEEE--ECCCCCcceEEEecCCCCCcEEEE
Confidence 87665433222110000111 12234442 454 44555567765555 6555443222 11 12345554
Q ss_pred -eeeCCEEEEEEe
Q 004816 404 -TLGNDCLFVEGA 415 (729)
Q Consensus 404 -~~~~~~~~~~~~ 415 (729)
+.+++. ++.++
T Consensus 276 ~~~~~~~-l~s~s 287 (299)
T d1nr0a2 276 IWLNETT-IVSAG 287 (299)
T ss_dssp EEEETTE-EEEEE
T ss_pred EECCCCE-EEEEe
Confidence 455554 44444
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.78 E-value=7.9e-09 Score=104.28 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=74.7
Q ss_pred CCCCCEEEEEcCCCCCCcc----ccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHh
Q 004816 489 EEKPPLLVKSHGGPTSEAR----GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG 564 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~----~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 564 (729)
..++|+ |++||..+.... ..|....+.|+++||.|+++|++|.+..... ....+++.+.++.+++
T Consensus 6 ~~k~Pv-vlvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g~g~s~~~----------~~~~~~l~~~i~~~~~ 74 (319)
T d1cvla_ 6 ATRYPV-ILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGP----------NGRGEQLLAYVKQVLA 74 (319)
T ss_dssp CCSSCE-EEECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBCSSCTTST----------TSHHHHHHHHHHHHHH
T ss_pred CCCCCE-EEECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCCCCCCCCC----------cccHHHHHHHHHHHHH
Confidence 345785 568997544322 1356678899999999999999975432110 1124566666666555
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 565 SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 565 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
.. +.++|.++||||||.++..++. +|++++.+|.+++..
T Consensus 75 ~~--~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~p~ 114 (319)
T d1cvla_ 75 AT--GATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTPH 114 (319)
T ss_dssp HH--CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred Hh--CCCCEEEEeccccHHHHHHHHHHCccccceEEEECCCC
Confidence 42 4579999999999999999888 999999999988753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.76 E-value=6.7e-07 Score=89.95 Aligned_cols=113 Identities=11% Similarity=0.007 Sum_probs=69.1
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCee-cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
..+++...++.|.++|+++ ++... +.-.. .......+|||||++++...... ..|+++|+++++..
T Consensus 9 ~~l~~~~~~~~v~v~D~~t--~~~~~t~~~~~---~~~p~~l~~spDG~~l~v~~~~~--------~~v~~~d~~t~~~~ 75 (346)
T d1jmxb_ 9 EYMIVTNYPNNLHVVDVAS--DTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNHY--------GDIYGIDLDTCKNT 75 (346)
T ss_dssp EEEEEEETTTEEEEEETTT--TEEEEEEECSS---CCSSCEEEECTTSSEEEEEETTT--------TEEEEEETTTTEEE
T ss_pred cEEEEEcCCCEEEEEECCC--CCEEEEEEcCC---CCCcceEEECCCCCEEEEEECCC--------CcEEEEeCccCeee
Confidence 4556666778999999998 65432 22111 12236788999999865543322 57999999998765
Q ss_pred Eeee-CC------CeeeeeeeCCCCCeEEEEEecCCCCCC----CCcEEEEEEecCCCC
Q 004816 235 VLVS-GS------DFYAFPRMDPRGERMAWIEWHHPNMPW----DKAELWVGYISENGD 282 (729)
Q Consensus 235 ~lt~-~~------~~~~~~~~SPDG~~la~~~~~~~~~~~----~~~~l~~~d~~~~g~ 282 (729)
.... .. ....+..|||||++|+....+.....+ ....+.+++.. +++
T Consensus 76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 133 (346)
T d1jmxb_ 76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGL 133 (346)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGG
T ss_pred eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc-cce
Confidence 4332 11 122456899999998876633221111 13446677766 443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.74 E-value=5.2e-07 Score=89.47 Aligned_cols=225 Identities=12% Similarity=0.063 Sum_probs=131.9
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.|...++.|+|++-..++|+++|+++ ++.+..... .......+.+||+.|+.. . ..|+++|.
T Consensus 24 ~wd~~~~~l~wvDi~~~~I~r~d~~~--g~~~~~~~~-----~~~~~i~~~~dg~l~va~-~----------~gl~~~d~ 85 (295)
T d2ghsa1 24 TFDPASGTAWWFNILERELHELHLAS--GRKTVHALP-----FMGSALAKISDSKQLIAS-D----------DGLFLRDT 85 (295)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTT--TEEEEEECS-----SCEEEEEEEETTEEEEEE-T----------TEEEEEET
T ss_pred eEECCCCEEEEEECCCCEEEEEECCC--CeEEEEECC-----CCcEEEEEecCCCEEEEE-e----------CccEEeec
Confidence 34445678999988888999999997 655544322 234566788898866543 2 35999999
Q ss_pred CCCceEEeeeCC-----CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 229 NGQNIQVLVSGS-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 229 ~~g~~~~lt~~~-----~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
++++.+.+.... ...+.....|+|+ |++......... ....+| .+. +|+... +..+. .....+
T Consensus 86 ~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~-~~g~l~--~~~-~g~~~~--~~~~~-----~~~Ng~ 153 (295)
T d2ghsa1 86 ATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAET-GAGSIY--HVA-KGKVTK--LFADI-----SIPNSI 153 (295)
T ss_dssp TTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCT-TCEEEE--EEE-TTEEEE--EEEEE-----SSEEEE
T ss_pred ccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccc-cceeEe--eec-CCcEEE--Eeecc-----CCccee
Confidence 999988876421 2345678999998 666664433211 123344 445 565432 22222 233578
Q ss_pred eeCCCCc-EEEEEecCCCceEEEEEEcCC--C----eEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 304 KWSSKGE-LFFVTDRKNGFWNLHKWIESN--N----EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 304 ~wspDG~-l~~~~~~~~g~~~l~~~d~~~--g----~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
.|++|++ +++. +. ....|++++.+. + +............. .+.+.+. .++.|++.....+
T Consensus 154 ~~s~d~~~l~~~-dt--~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~------pdG~~vD----~~GnlWva~~~~g 220 (295)
T d2ghsa1 154 CFSPDGTTGYFV-DT--KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGG------MDGSVCD----AEGHIWNARWGEG 220 (295)
T ss_dssp EECTTSCEEEEE-ET--TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSE------EEEEEEC----TTSCEEEEEETTT
T ss_pred eecCCCceEEEe-ec--ccceeeEeeecccccccccceEEEeccCccccc------ccceEEc----CCCCEEeeeeCCC
Confidence 9999999 5554 43 345677776542 2 12222211111111 1222331 3444554443333
Q ss_pred eEEEEEEECCCCceEeeccCCcceEEe-e--eeCCEEEEEEeCCC
Q 004816 377 RSYLGILDDFGHSLSLLDIPFTDIDNI-T--LGNDCLFVEGASGV 418 (729)
Q Consensus 377 ~~~ly~~d~~~g~~~~lt~~~~~v~~~-~--~~~~~~~~~~~~~~ 418 (729)
.|++++.++..+..+..+...+.++ . .+.+.+++.+++..
T Consensus 221 --~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~ 263 (295)
T d2ghsa1 221 --AVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 263 (295)
T ss_dssp --EEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred --ceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCcC
Confidence 6889999988888888776666666 2 34466666666543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.71 E-value=9.9e-07 Score=92.50 Aligned_cols=210 Identities=12% Similarity=0.016 Sum_probs=120.5
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.+..+.++. .+.++++..+ ++|+..+|-... ++....++.+..+ .+.+|+++++.+ |+...++.|.
T Consensus 20 ~p~~~~~~~d~~~~~~V~~~--~dg~v~vwD~~t---~~~~~~l~~g~~~-------~~vafSPDGk~l-~~~~~d~~v~ 86 (426)
T d1hzua2 20 RPKKQLNDLDLPNLFSVTLR--DAGQIALVDGDS---KKIVKVIDTGYAV-------HISRMSASGRYL-LVIGRDARID 86 (426)
T ss_dssp SCSSCCSCCCGGGEEEEEET--TTTEEEEEETTT---CSEEEEEECCSSE-------EEEEECTTSCEE-EEEETTSEEE
T ss_pred CCCcccccCCCCeEEEEEEc--CCCEEEEEECCC---CcEEEEEeCCCCe-------eEEEECCCCCEE-EEEeCCCCEE
Confidence 444555665 5677776544 467777774432 2333223222111 133566656555 5556678999
Q ss_pred EEeCCCCCCCCee---cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC-----
Q 004816 169 KHSIDSKDSSPLP---ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS----- 240 (729)
Q Consensus 169 ~~d~~~~~~~~~~---lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~----- 240 (729)
+||+++ ++... +.... .+..-...+.|||||++|+...... ..+.++|..+++...+....
T Consensus 87 vwd~~t--~~~~~~~~i~~~~-~~~~~~~s~~~spDG~~l~v~~~~~--------~~v~i~d~~~~~~~~~~~~~~~~~~ 155 (426)
T d1hzua2 87 MIDLWA--KEPTKVAEIKIGI-EARSVESSKFKGYEDRYTIAGAYWP--------PQFAIMDGETLEPKQIVSTRGMTVD 155 (426)
T ss_dssp EEETTS--SSCEEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEES--------SEEEEEETTTCCEEEEEECCEECSS
T ss_pred EEEccC--CceeEEEEEeCCC-CCcceEEeeeecCCCCEEEEeecCC--------CeEEEEcCCccceeEEeeccCCCcc
Confidence 999988 55432 22221 0112335778999999987665433 46888899988876654322
Q ss_pred -------CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 241 -------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 241 -------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
........|+|++.+++...+ ...+.+++.. ++........... ..+..+.++|||++++
T Consensus 156 ~~~~~~~~~~~~i~~s~d~~~~~~~~~~-------~~~i~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~ 222 (426)
T d1hzua2 156 TQTYHPEPRVAAIIASHEHPEFIVNVKE-------TGKVLLVNYK-DIDNLTVTSIGAA-----PFLADGGWDSSHRYFM 222 (426)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETT-------TTEEEEEECS-SSSSCEEEEEECC-----SSEEEEEECTTSCEEE
T ss_pred ceeecCCCceeEEEECCCCCEEEEecCC-------CCeEEEEEec-cccceeeEEeccC-----CccEeeeECCCCcEEE
Confidence 112234567777766655421 2346666655 3432222222222 3445678999999666
Q ss_pred EEecCCCceEEEEEEcCCCeEEEee
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
.... +...+..++..+++.....
T Consensus 223 ~a~~--~~~~~~~~~~~~~~~~~~~ 245 (426)
T d1hzua2 223 TAAN--NSNKVAVIDSKDRRLSALV 245 (426)
T ss_dssp EEET--TCSEEEEEETTTTEEEEEE
T ss_pred eeee--cccceeeeecccccEEEEe
Confidence 6654 3456777888888776655
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.70 E-value=2.7e-08 Score=98.12 Aligned_cols=100 Identities=15% Similarity=0.029 Sum_probs=72.4
Q ss_pred CCCCCEEEEEcCCCCCCcc---ccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC
Q 004816 489 EEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 565 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~---~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 565 (729)
..++| ||++||..+.... ..|....+.|.++||.|+++|++|.+ ..... .+++...++.+.+.
T Consensus 5 ~~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~~~---~~~~~----------a~~l~~~i~~~~~~ 70 (285)
T d1ex9a_ 5 QTKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLD---TSEVR----------GEQLLQQVEEIVAL 70 (285)
T ss_dssp CCSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSS---CHHHH----------HHHHHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCCCC---CcHHH----------HHHHHHHHHHHHHH
Confidence 45678 6888996443322 23666888999999999999998543 22211 34455555555444
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 566 GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 566 ~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
. +.+|+.++||||||.++..++. +|++++.++.++..
T Consensus 71 ~--g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~tP 108 (285)
T d1ex9a_ 71 S--GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp H--CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred c--CCCeEEEEEECccHHHHHHHHHHCCccceeEEEECCC
Confidence 2 3578999999999999998888 99999999988764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.68 E-value=7.5e-07 Score=89.46 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=131.8
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCee-cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
.|+|++...++|+++++++ +.... +... .......+++|||+.++....+... ...++.++..++...
T Consensus 52 ~Ly~~D~~~g~I~ri~p~g--~~~~~~~~~~----~~~p~gla~~~dG~l~va~~~~~~~-----~~~i~~~~~~~~~~~ 120 (319)
T d2dg1a1 52 QLFLLDVFEGNIFKINPET--KEIKRPFVSH----KANPAAIKIHKDGRLFVCYLGDFKS-----TGGIFAATENGDNLQ 120 (319)
T ss_dssp CEEEEETTTCEEEEECTTT--CCEEEEEECS----SSSEEEEEECTTSCEEEEECTTSSS-----CCEEEEECTTSCSCE
T ss_pred CEEEEECCCCEEEEEECCC--CeEEEEEeCC----CCCeeEEEECCCCCEEEEecCCCcc-----ceeEEEEcCCCceee
Confidence 5888887788999999987 54333 2222 1234678899999854332221111 256888888887776
Q ss_pred EeeeCC---CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 235 VLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 235 ~lt~~~---~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
.+.... ...+...++|||+ |++....... ......++.++.+ ++.... +..+. .....++|+|||+.
T Consensus 121 ~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~-~~~~g~v~~~~~d-g~~~~~--~~~~~-----~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 121 DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYS-TNPLGGVYYVSPD-FRTVTP--IIQNI-----SVANGIALSTDEKV 190 (319)
T ss_dssp EEECSSSSCCCEEEEEECTTSC-EEEEECCCBT-TBCCEEEEEECTT-SCCEEE--EEEEE-----SSEEEEEECTTSSE
T ss_pred eeccCCCcccCCcceeEEeccc-eeeccccccc-ccCcceeEEEecc-cceeEE--Eeecc-----ceeeeeeeccccce
Confidence 665432 2345678999997 7666533221 1234568888766 344322 22221 23356899999994
Q ss_pred EEEEecCCCceEEEEEEcCC--CeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCC
Q 004816 312 FFVTDRKNGFWNLHKWIESN--NEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 388 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~--g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g 388 (729)
+|.++. ...+|++++.+. ....... ......... . ..+.+.+. .++.||++.... ..|.+++.++.
T Consensus 191 lyvad~--~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~-~--~PdGl~vD----~~G~l~Va~~~~--g~V~~~~p~G~ 259 (319)
T d2dg1a1 191 LWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGH-E--GPDSCCID----SDDNLYVAMYGQ--GRVLVFNKRGY 259 (319)
T ss_dssp EEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S--EEEEEEEB----TTCCEEEEEETT--TEEEEECTTSC
T ss_pred EEEecc--cCCceEEEEEcCCCceeccccceeeeccCCc-c--ceeeeeEc----CCCCEEEEEcCC--CEEEEECCCCc
Confidence 444444 345788887643 2221111 000000000 0 11234443 344566655433 46888898877
Q ss_pred ceEeeccCCc------ceEEe-e-eeCCEEEEEEeCCCCC--ceEEEEEcCC
Q 004816 389 SLSLLDIPFT------DIDNI-T-LGNDCLFVEGASGVEP--SSVAKVTLDD 430 (729)
Q Consensus 389 ~~~~lt~~~~------~v~~~-~-~~~~~~~~~~~~~~~~--~~ly~~d~~~ 430 (729)
.+..+..+.. ....+ . .....+++..+....+ ..||+++...
T Consensus 260 ~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~~ 311 (319)
T d2dg1a1 260 PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA 311 (319)
T ss_dssp EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred EEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCCC
Confidence 7777754421 12233 2 2334555554443333 3478877643
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=7.3e-09 Score=101.72 Aligned_cols=93 Identities=10% Similarity=0.054 Sum_probs=56.8
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
+++.| ||++||++++. ..|..++..| ++.|+.+|++|.+....- + ..++|+...+..+ .
T Consensus 23 ~~~~P-l~l~Hg~~gs~--~~~~~l~~~L---~~~v~~~d~~g~~~~~~~--~--------~~a~~~~~~~~~~-----~ 81 (286)
T d1xkta_ 23 SSERP-LFLVHPIEGST--TVFHSLASRL---SIPTYGLQCTRAAPLDSI--H--------SLAAYYIDCIRQV-----Q 81 (286)
T ss_dssp CCSCC-EEEECCTTCCC--GGGHHHHHTC---SSCEEEECCCTTSCCSCH--H--------HHHHHHHHHHHHH-----C
T ss_pred CCCCe-EEEECCCCccH--HHHHHHHHHc---CCeEEEEeCCCCCCCCCH--H--------HHHHHHHHHHHHh-----c
Confidence 34556 67899986654 4455555544 688999999975432210 0 1123333333332 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEec
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLY 602 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~ 602 (729)
+.+++.++|||+||.+|+.++. +|+++..++...
T Consensus 82 ~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 82 PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp CSSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred CCCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 3478999999999999999998 888877765443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.67 E-value=8.7e-07 Score=90.99 Aligned_cols=158 Identities=6% Similarity=0.021 Sum_probs=95.5
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe---eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l---t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
+...+|||||+.|++...+ ..|.++++++++...+ ....+.....+|||||++|+-.+. .
T Consensus 10 It~~~~s~dg~~la~~~~~---------~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~--------D 72 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNN---------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT--------D 72 (371)
T ss_dssp CCEEEECTTSSEEEEECSS---------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET--------T
T ss_pred eEEEEECCCCCEEEEEeCC---------CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC--------C
Confidence 4567899999988766442 4688889888764433 233456778899999999886652 2
Q ss_pred cEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcc
Q 004816 270 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 349 (729)
Q Consensus 270 ~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 349 (729)
..|+++|+. +++......+.+.. ..+..+.|+|||+.+++... .+...+|.++............. .....
T Consensus 73 ~~i~vWd~~-~~~~~~~~~~~~~~----~~v~~i~~~p~~~~l~~~s~-d~~i~i~~~~~~~~~~~~~~~~~-~~~~~-- 143 (371)
T d1k8kc_ 73 RNAYVWTLK-GRTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSG-SRVISICYFEQENDWWVCKHIKK-PIRST-- 143 (371)
T ss_dssp SCEEEEEEE-TTEEEEEEECCCCS----SCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTTEEEEEEECT-TCCSC--
T ss_pred CeEEEEeec-cccccccccccccc----ccccccccccccccceeecc-cCcceeeeeeccccccccccccc-ccccc--
Confidence 348888988 56544343444443 55677899999994444444 46667777765444332222111 11111
Q ss_pred cccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 350 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
...+.|.| +++ ++++...++...+|-.
T Consensus 144 ---v~~v~~~p---~~~-~l~s~s~D~~v~v~~~ 170 (371)
T d1k8kc_ 144 ---VLSLDWHP---NSV-LLAAGSCDFKCRIFSA 170 (371)
T ss_dssp ---EEEEEECT---TSS-EEEEEETTSCEEEEEC
T ss_pred ---cccccccc---ccc-ceeccccCcEEEEEee
Confidence 11233332 554 4456667787777744
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.65 E-value=2.5e-06 Score=87.37 Aligned_cols=243 Identities=12% Similarity=0.040 Sum_probs=129.2
Q ss_pred ceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCee---cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLP---ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 148 ~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~---lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
.+.+++++ ..+++...++.|.+|++.+ ++..+ |..+ ...+...+|||||++|+....+ ..|
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~--~~~~~~~~l~gH----~~~V~~l~fsp~~~~l~s~s~D---------~~i 75 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSG--NKWVQVHELKEH----NGQVTGVDWAPDSNRIVTCGTD---------RNA 75 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEET--TEEEEEEEEECC----SSCEEEEEEETTTTEEEEEETT---------SCE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCC--CCEEEEEEecCC----CCCEEEEEECCCCCEEEEEECC---------CeE
Confidence 34455433 3344445677899999886 54333 3332 2446788999999987765443 358
Q ss_pred EEEEcCCCceEEee---eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeee--EEecCCCCCccc
Q 004816 224 VAIALNGQNIQVLV---SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--VCVAGFDPTIVE 298 (729)
Q Consensus 224 ~~~dl~~g~~~~lt---~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~--~~~~~~~~~~~~ 298 (729)
+++++.+++.+... ..........|+|||++|+..+.+ ..+.+++++ .+..... ....... .
T Consensus 76 ~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d--------~~i~i~~~~-~~~~~~~~~~~~~~~~----~ 142 (371)
T d1k8kc_ 76 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--------RVISICYFE-QENDWWVCKHIKKPIR----S 142 (371)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT--------SSEEEEEEE-TTTTEEEEEEECTTCC----S
T ss_pred EEEeecccccccccccccccccccccccccccccceeeccc--------Ccceeeeee-cccccccccccccccc----c
Confidence 88888877654332 223456678999999998876622 225555555 3321111 1222222 3
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee--c---cCccc--------cCCcccccCcceeeeeecCCC
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY--S---LDAEF--------SRPLWVFGINSYEIIQSHGEK 365 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~---~~~~~--------~~~~w~~~~~~~~~l~~~~~~ 365 (729)
.+..+.|+|||++++.... .+.-.+| +...+...... . ..... ....+ ...+.|.+ ++
T Consensus 143 ~v~~v~~~p~~~~l~s~s~-D~~v~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~---~g 213 (371)
T d1k8kc_ 143 TVLSLDWHPNSVLLAAGSC-DFKCRIF--SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW---VHGVCFSA---NG 213 (371)
T ss_dssp CEEEEEECTTSSEEEEEET-TSCEEEE--ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---EEEEEECS---SS
T ss_pred ccccccccccccceecccc-CcEEEEE--eeccCccccccccccccccccceeeeeeccCccCc---EEEEEeec---cc
Confidence 4566889999994444444 4554454 44332111000 0 00000 00011 12344553 56
Q ss_pred CEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 366 NLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 366 ~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+.|+ +...++...+| |...++ +..+......+..+ ..+++.+++.+ . +....++.++...+.
T Consensus 214 ~~l~-s~~~d~~i~iw--d~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~-d~~~~~~~~~~~~~~ 277 (371)
T d1k8kc_ 214 SRVA-WVSHDSTVCLA--DADKKMAVATLASETLPLLAVTFITESSLVAAG-H-DCFPVLFTYDSAAGK 277 (371)
T ss_dssp SEEE-EEETTTEEEEE--EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T-TSSCEEEEEETTTTE
T ss_pred cccc-ccccCCcceEE--eeecccceeeeecccccceeeeecCCCCEEEEE-c-CCceEEEEeeCCCce
Confidence 6554 44456765555 655554 34454455567776 45566666543 3 334456666655444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.64 E-value=3.3e-06 Score=88.46 Aligned_cols=225 Identities=10% Similarity=0.034 Sum_probs=131.4
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCC----
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP---- 266 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~---- 266 (729)
......++||||++++|..+..+.+ ...|+++|+++|+.....-......+++|++|++.|+|+..+.....
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e----~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSD----WVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCS----CEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred ceecceEecCCCCEEEEEeccccCc----hheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCccccc
Confidence 3445678999999999998877654 47899999999976432211122356899999999999987653211
Q ss_pred ----CCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec-CCCceEEEEEEcCCCeE------
Q 004816 267 ----WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR-KNGFWNLHKWIESNNEV------ 334 (729)
Q Consensus 267 ----~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~-~~g~~~l~~~d~~~g~~------ 334 (729)
+...++|+..+. ++......+....+.. .....+..+.||+ ++..... ......++.++......
T Consensus 201 ~~~~~~~~~v~~h~lg-t~~~~d~~v~~e~d~~--~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 277 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLG-TDQSEDILCAEFPDEP--KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (430)
T ss_dssp CCCCCCCCEEEEEETT-SCGGGCEEEECCTTCT--TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred ccccCCcceEEEEECC-CCccccccccccccCC--ceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence 123468888887 4543334455544311 2233455788999 5444433 12345688888654221
Q ss_pred --EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC-eEEEEEEECCCCc---eEee-ccCCcceE-Ee-ee
Q 004816 335 --LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDDFGHS---LSLL-DIPFTDID-NI-TL 405 (729)
Q Consensus 335 --~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g-~~~ly~~d~~~g~---~~~l-t~~~~~v~-~~-~~ 405 (729)
..+.... ...+.++. + .++.+|+.++.++ ...|+.++++... ++.+ ......+. .. ..
T Consensus 278 ~~~~~~~~~-----------~~~~~~~~-~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~ 344 (430)
T d1qfma1 278 KWVKLIDNF-----------EGEYDYVT-N-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV 344 (430)
T ss_dssp CCEEEECSS-----------SSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred ceeEeeccc-----------ccceEEEe-c-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEE
Confidence 1121100 00111111 0 4567777777654 3689999887643 2333 33334332 22 34
Q ss_pred eCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 406 GNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 406 ~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
.++.+++ ....+...+|+++++++++...+
T Consensus 345 ~~~~lvl-~~~~~~~~~l~v~~~~~~~~~~~ 374 (430)
T d1qfma1 345 RSNFLVL-CYLHDVKNTLQLHDLATGALLKI 374 (430)
T ss_dssp TTTEEEE-EEEETTEEEEEEEETTTCCEEEE
T ss_pred ECCEEEE-EEEcCCEeEEEEEECCCCcEEEe
Confidence 4555544 44455667799999988876443
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.63 E-value=1.3e-07 Score=91.69 Aligned_cols=195 Identities=12% Similarity=0.047 Sum_probs=109.5
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHH-HHHHHhCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKAD 569 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d 569 (729)
..|.|+|+||...+.....|..++..|.. .+.|+.++.+|-+. +. ... .+++++.+. ++.+.+. ..
T Consensus 41 ~~~~l~c~~~~~~gg~~~~y~~La~~L~~-~~~V~al~~pG~~~-~e----~~~-----~s~~~~a~~~~~~i~~~--~~ 107 (255)
T d1mo2a_ 41 GEVTVICCAGTAAISGPHEFTRLAGALRG-IAPVRAVPQPGYEE-GE----PLP-----SSMAAVAAVQADAVIRT--QG 107 (255)
T ss_dssp CSSEEEEECCCSSSCSGGGGHHHHHHHTT-TCCEEEECCTTSST-TC----CEE-----SSHHHHHHHHHHHHHHT--TS
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCCcCC-CC----CCC-----CCHHHHHHHHHHHHHHh--CC
Confidence 45889999984334444667777787765 48999999986432 11 111 124444443 3444443 23
Q ss_pred CCcEEEEEcChHHHHHHHHHh----CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcC------Chh------hhh
Q 004816 570 EKRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG------SEK------DYY 633 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~~------~~~ 633 (729)
..++.|+|||+||.+|+.++. +...+..++++.+..-...... ..+.......... +.. .+.
T Consensus 108 ~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~ 185 (255)
T d1mo2a_ 108 DKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAM--NAWLEELTATLFDRETVRMDDTRLTALGAYD 185 (255)
T ss_dssp SSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEECSCSSHHHHH--HHHHHHHHTTCC----CCCCHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEECCCCCCCccch--hhHHHHHHHHhhccccccCCHHHHHHHHHHH
Confidence 467999999999999998875 4566888887776432111100 0000000010000 000 000
Q ss_pred hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHh-CCCCEEEEEECCCCcc-cCCcccHHHHHHHHHHHHH
Q 004816 634 EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE-NGLPVALVEYEGEQHG-FRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 634 ~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~-~g~~~~~~~~~~~gH~-~~~~~~~~~~~~~~~~fl~ 708 (729)
..-.-+....+.+|++++.+.+|....... ..+. ...+++++.+|+ +|. +.. +......+.|.+||.
T Consensus 186 ~~~~~~~~~~~~~p~l~v~a~~~~~~~~~~------~w~~~~~~~~~~~~v~G-~H~~ml~-~~~~~~A~~i~~~L~ 254 (255)
T d1mo2a_ 186 RLTGQWRPRETGLPTLLVSAGEPMGPWPDD------SWKPTWPFEHDTVAVPG-DHFTMVQ-EHADAIARHIDAWLG 254 (255)
T ss_dssp HHHHHCCCCCCCCCEEEEECCSSSSCCTTC------CCCCCCCSSCEEEECCS-CCSSCSS-CCHHHHHHHHHHHHT
T ss_pred HHHhcCCCccccceEEEeecCCCCCcchhh------HHHHhCCCCcEEEEECC-CCccccc-ccHHHHHHHHHHHhC
Confidence 000112245678999999998875543321 1111 234678999987 675 433 456666677777763
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=8.8e-09 Score=112.20 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=86.9
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh--HHHhhccCCC
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE--FRERLLGRWG 548 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~--~~~~~~~~~~ 548 (729)
.|..-+|.|.+.. +.++.||+|++|||...........-...++.++++||.+|||-+. +|-- -.....+++
T Consensus 96 CL~LnI~~P~~~~----~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~vIvVt~nYRLg~-~GFl~~~~~~~~gN~- 169 (532)
T d2h7ca1 96 CLYLNIYTPADLT----KKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGI-WGFFSTGDEHSRGNW- 169 (532)
T ss_dssp CCEEEEEECSCTT----SCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHH-HHHCCCSSTTCCCCH-
T ss_pred CCEEEEEECCCCC----CCCCcEEEEEEeCCcccccccccCCchhhhhcCceEEEEEeeccCC-Ccccccccccccccc-
Confidence 4555667786532 3567899999999864332222212234557789999999999521 1110 001122233
Q ss_pred cccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEecccc
Q 004816 549 IVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 605 (729)
Q Consensus 549 ~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~ 605 (729)
-+.|...|++|+.++ ..-|+++|.|+|+|.||..+..++. ....|..+|+.+|..
T Consensus 170 --Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 170 --GHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp --HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred --ccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 489999999999885 3469999999999999999877765 345899999998754
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.61 E-value=1.1e-08 Score=109.75 Aligned_cols=126 Identities=21% Similarity=0.300 Sum_probs=87.5
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hh-hhHHHhhCCcEEEEecCCCCCCCch----hHHHhh
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NL-SIQYWTSRGWAFVDVNYGGSTGYGR----EFRERL 543 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~-~~~~la~~G~~v~~~d~rGs~g~g~----~~~~~~ 543 (729)
..|+.-+|.|.. +.++.||+|++|||......... .. ......+.+++||.+|||-+. +|- +.....
T Consensus 80 DCL~lni~~P~~------~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~-~GFl~~~~~~~~~ 152 (483)
T d1qe3a_ 80 DCLYVNVFAPDT------PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGP-FGFLHLSSFDEAY 152 (483)
T ss_dssp CCCEEEEEEECS------SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHH-HHSCCCTTTCTTS
T ss_pred cCCEEEEEECCC------CCCCCceEEEEeecccccCCccccccccccccccCceEEEeecccccc-hhhcccccccccc
Confidence 456777788865 35679999999998643322221 11 223444568999999999521 111 111112
Q ss_pred ccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEecccc
Q 004816 544 LGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 605 (729)
Q Consensus 544 ~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~ 605 (729)
.+++ -+.|...|++|+.++ -.-|+++|.|+|+|.||..+..++. ...+|+.+|+.+|..
T Consensus 153 ~gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 153 SDNL---GLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp CSCH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred cccc---ccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 2333 489999999999886 3459999999999999999988876 335899999999864
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.59 E-value=2.7e-06 Score=89.11 Aligned_cols=211 Identities=10% Similarity=0.027 Sum_probs=113.9
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 273 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~ 273 (729)
..+.+++|.+.++++.... ...|.++|++++++..-.+......+.+|||||++|+..+ . ...|.
T Consensus 22 ~~~~~~~d~~~~~~V~~~~-------dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~-~-------d~~v~ 86 (426)
T d1hzua2 22 KKQLNDLDLPNLFSVTLRD-------AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG-R-------DARID 86 (426)
T ss_dssp SSCCSCCCGGGEEEEEETT-------TTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEE-T-------TSEEE
T ss_pred CcccccCCCCeEEEEEEcC-------CCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEe-C-------CCCEE
Confidence 4566888888777776654 2679999999998754433334466789999999986554 2 23589
Q ss_pred EEEecCCCCeeeeEEec-CCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccC-ccccCCccc
Q 004816 274 VGYISENGDVYKRVCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AEFSRPLWV 350 (729)
Q Consensus 274 ~~d~~~~g~~~~~~~~~-~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~-~~~~~~~w~ 350 (729)
++|++ +++......+. +.... .....+.|+|||+ ++..... . ..+..+|..+++...+.... .......+.
T Consensus 87 vwd~~-t~~~~~~~~i~~~~~~~--~~~~s~~~spDG~~l~v~~~~-~--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 160 (426)
T d1hzua2 87 MIDLW-AKEPTKVAEIKIGIEAR--SVESSKFKGYEDRYTIAGAYW-P--PQFAIMDGETLEPKQIVSTRGMTVDTQTYH 160 (426)
T ss_dssp EEETT-SSSCEEEEEEECCSEEE--EEEECCSTTCTTTEEEEEEEE-S--SEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred EEEcc-CCceeEEEEEeCCCCCc--ceEEeeeecCCCCEEEEeecC-C--CeEEEEcCCccceeEEeeccCCCccceeec
Confidence 99998 66542222222 11100 3345788999999 5544433 2 45667788888766554322 112122222
Q ss_pred ccCc--ceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE---eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEE
Q 004816 351 FGIN--SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS---LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVA 424 (729)
Q Consensus 351 ~~~~--~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~---~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly 424 (729)
+... ...+.+ ++..+++.....+ .+..++...+... .+..+ .....+ ...++++++.+... ...+.
T Consensus 161 ~~~~~~~i~~s~---d~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~a~~~--~~~~~ 232 (426)
T d1hzua2 161 PEPRVAAIIASH---EHPEFIVNVKETG--KVLLVNYKDIDNLTVTSIGAA-PFLADGGWDSSHRYFMTAANN--SNKVA 232 (426)
T ss_dssp SCCCEEEEEECS---SSSEEEEEETTTT--EEEEEECSSSSSCEEEEEECC-SSEEEEEECTTSCEEEEEETT--CSEEE
T ss_pred CCCceeEEEECC---CCCEEEEecCCCC--eEEEEEeccccceeeEEeccC-CccEeeeECCCCcEEEeeeec--cccee
Confidence 2211 112221 4444444433233 3444444443322 22222 223333 34444454544433 24566
Q ss_pred EEEcCCCcc
Q 004816 425 KVTLDDHKL 433 (729)
Q Consensus 425 ~~d~~~~~~ 433 (729)
.++...++.
T Consensus 233 ~~~~~~~~~ 241 (426)
T d1hzua2 233 VIDSKDRRL 241 (426)
T ss_dssp EEETTTTEE
T ss_pred eeecccccE
Confidence 777777764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.55 E-value=1.9e-06 Score=87.27 Aligned_cols=135 Identities=10% Similarity=-0.020 Sum_probs=80.2
Q ss_pred eecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCC--CCcEEEE
Q 004816 197 IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELWV 274 (729)
Q Consensus 197 ~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~--~~~~l~~ 274 (729)
+.||||+++++........ ...+|++|.++++........ ...+++|||||++|++.......... ....|.+
T Consensus 8 a~spdg~~~~v~~~~~~~~----~~~v~v~D~~tg~~~~~~~~g-~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAA----VTQQFVIDGEAGRVIGMIDGG-FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp CCCCCTTEEEEEECGGGCS----SEEEEEEETTTTEEEEEEEEC-SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eeCCCCCEEEEEecccCCC----cCeEEEEECCCCcEEEEEECC-CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 4589999985443322211 367999999998765433322 22368999999999887632211100 1346899
Q ss_pred EEecCCCCeeeeEEecCCCCCcc-ccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 275 GYISENGDVYKRVCVAGFDPTIV-ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 275 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
+|+. +++.............+. .....+.|+|||+.++..+. .....+..++..+++.....
T Consensus 83 ~D~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~~~~~~~~~ 145 (355)
T d2bbkh_ 83 FDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKAFKRML 145 (355)
T ss_dssp ECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEE
T ss_pred EECC-CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecC-CCCceeeeeecCCCcEeeEE
Confidence 9998 777543332222211100 12345689999994344443 34456777888888765443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.55 E-value=3.8e-06 Score=85.74 Aligned_cols=174 Identities=11% Similarity=-0.048 Sum_probs=98.1
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCC--CCcE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAE 271 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~--~~~~ 271 (729)
...++||||++++......... ...||++|.++++...-.... ...++.|||||++|++.........+ ....
T Consensus 24 ~~~a~spdg~~~~~~~~~~~~~----~~~v~v~D~~tg~~~~~~~~~-~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~ 98 (373)
T d2madh_ 24 NDEAPGADGRRSYINLPAHHSA----IIQQWVLDAGSGSILGHVNGG-FLPNPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred cccccCCCCCEEEEEcccccCC----CceEEEEECCCCCEEEEEeCC-CCccEEEcCCCCEEEEEeecCCcccccccceE
Confidence 5667999999986654322111 357999999998865433322 23368999999999988754432211 2356
Q ss_pred EEEEEecCCCCeeeeEEecCCCCCc-cccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcc
Q 004816 272 LWVGYISENGDVYKRVCVAGFDPTI-VESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 349 (729)
Q Consensus 272 l~~~d~~~~g~~~~~~~~~~~~~~~-~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 349 (729)
|.++|+. +++.............. ........|++||+ +++.... ....+..++..+++........
T Consensus 99 v~v~D~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~-------- 167 (373)
T d2madh_ 99 VEVFDPV-TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA--AGPAVGLVVQGGSSDDQLLSSP-------- 167 (373)
T ss_pred EEEEECC-CCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc--CCCceEEeeccCCeEEEEeccc--------
Confidence 8999998 67653322222111000 01224578999999 5544433 2234445566555443322111
Q ss_pred cccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEe
Q 004816 350 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL 392 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~ 392 (729)
....+.+ +++.++++...++. +++++..+++...
T Consensus 168 ----~~~~~s~---~g~~~~v~~~~dg~--~~~~~~~~~~~~~ 201 (373)
T d2madh_ 168 ----TCYHIHP---GAPSTFYLLCAQGG--LAKTDHAGGAAGA 201 (373)
T ss_pred ----eeEEEec---CCCcEEEEEcCCCe--EEEEEcCCceeeE
Confidence 1122332 66677777766665 4455666665443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3e-05 Score=75.02 Aligned_cols=228 Identities=10% Similarity=0.028 Sum_probs=138.3
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC----c
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ----N 232 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g----~ 232 (729)
|+|+. ...|..+++++ .....|... ........+++..++|+++.... ..|++.++++. .
T Consensus 4 Ll~s~--~~~I~~~~l~~--~~~~~~~~~----~~~~~~id~d~~~~~lYw~D~~~--------~~I~~~~l~~~~~~~~ 67 (266)
T d1ijqa1 4 LFFTN--RHEVRKMTLDR--SEYTSLIPN----LRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVSS 67 (266)
T ss_dssp EEEEC--BSSEEEEETTS--CCCEEEECS----CSSEEEEEEETTTTEEEEEETTT--------TEEEEEEC--------
T ss_pred EEEEC--CCeEEEEECCC--CcceeeeCC----CCceEEEEEEeCCCEEEEEECCC--------CEEEEEEecCCCCCcc
Confidence 56664 34599999997 666666544 22345667889999987764322 56888888752 2
Q ss_pred eEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-
Q 004816 233 IQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 310 (729)
Q Consensus 233 ~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~- 310 (729)
.+. +..+.....+.+..+-++.|+|+.. ....|.+++++ +... ..+..... ..+..++..|...
T Consensus 68 ~~~~~~~~~~~p~glAvD~~~~~lY~~d~-------~~~~I~v~~~~-g~~~--~~~~~~~~----~~P~~l~vd~~~g~ 133 (266)
T d1ijqa1 68 YDTVISRDIQAPDGLAVDWIHSNIYWTDS-------VLGTVSVADTK-GVKR--KTLFRENG----SKPRAIVVDPVHGF 133 (266)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETT-SSSE--EEEEECTT----CCEEEEEEETTTTE
T ss_pred eEEEEeCCCCCcceEEEeeccceEEEEec-------CCCEEEeEecC-CceE--EEEEcCCC----CCcceEEEEcccCe
Confidence 222 3334344556788888999998763 23469999987 3332 22333322 3345566777544
Q ss_pred EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 311 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 311 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
+||+ +. .....|++.++++...+.+.... ...| ..+.+.+ .+++|||.. .+...|..++++|...
T Consensus 134 ly~~-~~-~~~~~I~r~~~dGs~~~~l~~~~--~~~p------~gl~iD~---~~~~lYw~d--~~~~~I~~~~~dG~~~ 198 (266)
T d1ijqa1 134 MYWT-DW-GTPAKIKKGGLNGVDIYSLVTEN--IQWP------NGITLDL---LSGRLYWVD--SKLHSISSIDVNGGNR 198 (266)
T ss_dssp EEEE-EC-SSSCEEEEEETTSCCEEEEECSS--CSCE------EEEEEET---TTTEEEEEE--TTTTEEEEEETTSCSC
T ss_pred EEEe-cc-CCCcceeEeccCCCceecccccc--ccee------eEEEeec---cccEEEEec--CCcCEEEEEECCCCCE
Confidence 6665 43 23457999999888777776432 1111 1233322 567899875 3445789999988776
Q ss_pred EeeccCC---cceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 391 SLLDIPF---TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 391 ~~lt~~~---~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+.+.... .....+...++.+++.-.. ...|++++..+++
T Consensus 199 ~~~~~~~~~~~~p~~lav~~~~ly~td~~---~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 199 KTILEDEKRLAHPFSLAVFEDKVFWTDII---NEAIFSANRLTGS 240 (266)
T ss_dssp EEEEECTTTTSSEEEEEEETTEEEEEETT---TTEEEEEETTTCC
T ss_pred EEEEeCCCcccccEEEEEECCEEEEEECC---CCeEEEEECCCCc
Confidence 6554332 2234556667777665432 3579999877765
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.50 E-value=8.5e-08 Score=104.11 Aligned_cols=128 Identities=19% Similarity=0.229 Sum_probs=85.4
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cch--hhh--HHHhhCCcEEEEecCCCCC-CCc--hhHHH
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILN--LSI--QYWTSRGWAFVDVNYGGST-GYG--REFRE 541 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~--~~~--~~la~~G~~v~~~d~rGs~-g~g--~~~~~ 541 (729)
..|..-+|.|+... ..++.||||++|||....... .+. .++ ..++.++++||.+|||-+. |+- .....
T Consensus 96 DCL~LnI~~P~~~~----~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~ 171 (534)
T d1llfa_ 96 DCLTINVVRPPGTK----AGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA 171 (534)
T ss_dssp CCCEEEEEECTTCC----TTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred cCCEEEEEECCCCC----CCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCccccc
Confidence 35666778886532 357899999999986432222 222 222 3445789999999999521 111 11122
Q ss_pred hhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh--C-------CCcceEEEEeccc
Q 004816 542 RLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA--F-------RDTFKAGASLYGV 604 (729)
Q Consensus 542 ~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~--~-------~~~~~a~v~~~~~ 604 (729)
...+++ -+.|...|++|+.++ -.-|+++|.|+|+|.||..+...+. . ..+|+.+|+.+|.
T Consensus 172 ~~~gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 172 EGSGNA---GLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HTCTTH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred cccccc---chhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 223333 489999999999886 3469999999999999998765543 1 1369999999873
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.45 E-value=1.2e-07 Score=103.16 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=86.2
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cc--hhhh-H-HHhhCCcEEEEecCCCCC-CC--chhHHH
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL--NLSI-Q-YWTSRGWAFVDVNYGGST-GY--GREFRE 541 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~--~~~~-~-~la~~G~~v~~~d~rGs~-g~--g~~~~~ 541 (729)
..|+.-+|.|++.. +.++.||+|++|||....... .+ ..+. . ..+..+++||.+|||-+. |+ ..+...
T Consensus 104 DCL~LnI~~P~~~~----~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~ 179 (544)
T d1thga_ 104 DCLYLNVFRPAGTK----PDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA 179 (544)
T ss_dssp CCCEEEEEEETTCC----TTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred cCCEEEEEECCCCC----CCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhc
Confidence 34666677786532 357889999999986433221 11 2222 2 335679999999999421 11 112222
Q ss_pred hhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhCC---------CcceEEEEeccc
Q 004816 542 RLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAFR---------DTFKAGASLYGV 604 (729)
Q Consensus 542 ~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~~---------~~~~a~v~~~~~ 604 (729)
...+++| +.|...|++|+.++ ..-|+++|.|+|+|.||..+..++..| .+|..+|+.+|.
T Consensus 180 ~~~gN~G---l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 180 EGNTNAG---LHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp HTCTTHH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred cccccHH---HHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 2334444 89999999999886 345899999999999999887666422 389999998874
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.45 E-value=7.1e-05 Score=72.94 Aligned_cols=267 Identities=9% Similarity=0.017 Sum_probs=141.0
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcE
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l 167 (729)
..+..++|+|.+.+..+.. .++...||....+ +....+.. +........++.+ .+++.......+
T Consensus 18 ~~I~~l~~sp~~~~l~s~s---~Dg~i~iWd~~~~---~~~~~~~~--------h~~~V~~~~~~~~~~~~~~~~~~~~~ 83 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSAS---EDATIKVWDYETG---DFERTLKG--------HTDSVQDISFDHSGKLLASCSADMTI 83 (317)
T ss_dssp SCEEEEEECSSSSEEEEEE---SSSCEEEEETTTC---CCCEEECC--------CSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred CCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCC---CEEEEEeC--------CCCcEEEEeeeccccccccccccccc
Confidence 4567899999334444433 4578888876543 22222211 1112233344433 334444445556
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-eeeCCCeeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVSGSDFYAFP 246 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~~~~~~~~~ 246 (729)
..++... .......... ........++|+++.++....+ ..+.++++.+++... +..........
T Consensus 84 ~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (317)
T d1vyhc1 84 KLWDFQG--FECIRTMHGH---DHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYCVKTFTGHREWVRMV 149 (317)
T ss_dssp CEEETTS--SCEEECCCCC---SSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ccccccc--cccccccccc---cccceeeeccCCCceEEeeccC---------cceeEeecccceeeeEEccCCCcceee
Confidence 6666654 3332222221 2345667899999987766543 467888998876644 33344556678
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC------------------
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK------------------ 308 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD------------------ 308 (729)
.|+|||+.|+..+. ...|.++++. +++. ...+.+.. ..+....|+|+
T Consensus 150 ~~~~~~~~l~~~~~--------d~~v~~~~~~-~~~~--~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (317)
T d1vyhc1 150 RPNQDGTLIASCSN--------DQTVRVWVVA-TKEC--KAELREHR----HVVECISWAPESSYSSISEATGSETKKSG 214 (317)
T ss_dssp EECTTSSEEEEEET--------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred ecccCCCEEEEEeC--------CCeEEEEeec-ccee--eEEEecCC----CCceEEEEeeccccceeeccccceeeeec
Confidence 99999998876652 2337777776 4543 22232222 22223334333
Q ss_pred --CcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 309 --GELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 309 --G~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
+.+++.... . ..|..+|..+++...-. .....+. .+.+.+ +++ ++++...+|...|| |+
T Consensus 215 ~~~~~~~~~~~-d--~~i~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~---~~~-~l~s~~~dg~i~iw--d~ 276 (317)
T d1vyhc1 215 KPGPFLLSGSR-D--KTIKMWDVSTGMCLMTLVGHDNWVR---------GVLFHS---GGK-FILSCADDKTLRVW--DY 276 (317)
T ss_dssp --CCEEEEEET-T--SEEEEEETTTTEEEEEEECCSSCEE---------EEEECS---SSS-CEEEEETTTEEEEE--CC
T ss_pred cCCceeEeccC-C--CEEEEEECCCCcEEEEEeCCCCCEE---------EEEECC---CCC-EEEEEECCCeEEEE--EC
Confidence 233333332 2 34666788777644322 2222222 233332 444 45556667765555 66
Q ss_pred CCCc-eEeeccCCcceEEe-eeeCCEEEEEEeC
Q 004816 386 FGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 386 ~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~ 416 (729)
.+++ +..+......|..+ ..+++.+++.++.
T Consensus 277 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~ 309 (317)
T d1vyhc1 277 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309 (317)
T ss_dssp TTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 6655 44555556667777 4445555555543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.45 E-value=2.7e-06 Score=84.48 Aligned_cols=206 Identities=9% Similarity=0.006 Sum_probs=117.5
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~ 168 (729)
.+++++++|++++|+.+... + .|++++.+ |+...+...+.. ...+.++.+ .+++.....+.++
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~---~--~I~~i~p~--g~~~~~~~~~~~---------~~gla~~~dG~l~v~~~~~~~~~ 92 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEV---G--EIVSITPD--GNQQIHATVEGK---------VSGLAFTSNGDLVATGWNADSIP 92 (302)
T ss_dssp CEEEEEECTTSCEEEEETTT---T--EEEEECTT--CCEEEEEECSSE---------EEEEEECTTSCEEEEEECTTSCE
T ss_pred CcCCEEECCCCCEEEEeCCC---C--EEEEEeCC--CCEEEEEcCCCC---------cceEEEcCCCCeEEEecCCceEE
Confidence 35688999966798887532 3 58888877 344433322201 112333322 4666655666677
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC--------
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS-------- 240 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~-------- 240 (729)
++++.+..+...++....+ ....++.++++||+. |+.+.. ...+|.++..++.........
T Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~n~i~~~~~g~~--~v~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (302)
T d2p4oa1 93 VVSLVKSDGTVETLLTLPD--AIFLNGITPLSDTQY--LTADSY-------RGAIWLIDVVQPSGSIWLEHPMLARSNSE 161 (302)
T ss_dssp EEEEECTTSCEEEEEECTT--CSCEEEEEESSSSEE--EEEETT-------TTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred EEEecccccceeeccccCC--ccccceeEEccCCCE--Eeeccc-------cccceeeeccCCcceeEecCCccceeecc
Confidence 7776541134444433211 233577889999963 333322 257999999887655433211
Q ss_pred C-eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCC
Q 004816 241 D-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 319 (729)
Q Consensus 241 ~-~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~ 319 (729)
. ....-..++|++.+++... ....|+.++++..+........... .....+++++||+||+....
T Consensus 162 ~~~~~~ngi~~~~~~l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~-----~~pdgia~d~dG~l~va~~~-- 227 (302)
T d2p4oa1 162 SVFPAANGLKRFGNFLYVSNT-------EKMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHI-- 227 (302)
T ss_dssp CCSCSEEEEEEETTEEEEEET-------TTTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCEEEECBT--
T ss_pred CcccccccccccCCceeeecC-------CCCeEEeccccccccccccccccCC-----CCCcceEECCCCCEEEEEcC--
Confidence 1 1111134557788887763 2356999998844443333333322 34467899999986655543
Q ss_pred CceEEEEEEcCCCeEEEe
Q 004816 320 GFWNLHKWIESNNEVLAI 337 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l 337 (729)
...|++++++++.....
T Consensus 228 -~~~V~~i~p~G~~~~~~ 244 (302)
T d2p4oa1 228 -YNSVVRIAPDRSTTIIA 244 (302)
T ss_dssp -TCCEEEECTTCCEEEEE
T ss_pred -CCcEEEECCCCCEEEEE
Confidence 24699999876544433
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=1.6e-05 Score=76.84 Aligned_cols=235 Identities=11% Similarity=0.013 Sum_probs=141.6
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCC--CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
-|+|+. .+.|..+++++ .....+.... ...........+.+..++|+++.... ..|++++++++..
T Consensus 3 fLl~s~--~~~I~~~~ld~--~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~--------~~I~~~~l~g~~~ 70 (263)
T d1npea_ 3 HLLFAQ--TGKIERLPLER--NTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE--------PSIGRASLHGGEP 70 (263)
T ss_dssp EEEEEE--EEEEEEEEESS--SCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT--------TEEEEEESSSCCC
T ss_pred EEEEeC--CCeEEEEECCC--ccccccccccccccCCCcEEEEEEEeCCCEEEEEECCC--------CeEEEEEcccCCc
Confidence 466774 44698999886 4333222110 00012233466888899887654322 5799999998877
Q ss_pred EEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-E
Q 004816 234 QVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 311 (729)
Q Consensus 234 ~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l 311 (729)
+.+.. +.....+.++..-++.|+|+.. ....|.+++++ +... ..+....- ..+..++..|... +
T Consensus 71 ~~v~~~~~~~p~~iAvD~~~~~lY~~d~-------~~~~I~~~~~d-g~~~--~~l~~~~l----~~p~~l~vdp~~g~l 136 (263)
T d1npea_ 71 TTIIRQDLGSPEGIALDHLGRTIFWTDS-------QLDRIEVAKMD-GTQR--RVLFDTGL----VNPRGIVTDPVRGNL 136 (263)
T ss_dssp EEEECTTCCCEEEEEEETTTTEEEEEET-------TTTEEEEEETT-SCSC--EEEECSSC----SSEEEEEEETTTTEE
T ss_pred EEEEEeccccccEEEEeccCCeEEEecc-------CCCEEEEEecC-CceE--EEEecccc----cCCcEEEEecccCcE
Confidence 66653 3344456677766888998873 23469999987 3332 23333322 3345667777666 6
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
||.... .+...|++.++++...+.+.... ...| ..+.+.. .+++|||.. .+...|.+++++++..+
T Consensus 137 y~t~~~-~~~~~I~r~~~dG~~~~~i~~~~--~~~P------~glaiD~---~~~~lYw~d--~~~~~I~~~~~~g~~~~ 202 (263)
T d1npea_ 137 YWTDWN-RDNPKIETSHMDGTNRRILAQDN--LGLP------NGLTFDA---FSSQLCWVD--AGTHRAECLNPAQPGRR 202 (263)
T ss_dssp EEEECC-SSSCEEEEEETTSCCCEEEECTT--CSCE------EEEEEET---TTTEEEEEE--TTTTEEEEEETTEEEEE
T ss_pred EEeecC-CCCcEEEEecCCCCCceeeeeec--cccc------ceEEEee---cCcEEEEEe--CCCCEEEEEECCCCCeE
Confidence 655433 45567999999887666665321 1122 1233322 567888874 45557889999888777
Q ss_pred eeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 392 LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 392 ~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.+..+......+...++.+++.-.. ...+++++..+++.
T Consensus 203 ~v~~~~~~P~~lav~~~~lYwtd~~---~~~I~~~~~~~g~~ 241 (263)
T d1npea_ 203 KVLEGLQYPFAVTSYGKNLYYTDWK---TNSVIAMDLAISKE 241 (263)
T ss_dssp EEEECCCSEEEEEEETTEEEEEETT---TTEEEEEETTTTEE
T ss_pred EEECCCCCcEEEEEECCEEEEEECC---CCEEEEEECCCCcc
Confidence 6655544334565567776665543 34788888877753
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=8.7e-06 Score=81.53 Aligned_cols=242 Identities=7% Similarity=-0.028 Sum_probs=128.6
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCC---CeecCCCCCCCceeeecceecC--CCCEEEEEEeccCCCCCCcceEE
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~---~~~lt~~~~~~~~~~~~~~~SP--dG~~l~~~~~~~~~~~~~~~~~l 223 (729)
.|.+.++.+++.......|+.++... .. ...+.... ...+...+||| ||++|+....+ ..|
T Consensus 24 ~~~~~~~~la~~~~~~~~i~~~~~~~--~~~~~~~~~~gh~---~~~v~~v~fsP~~~g~~lasgs~D---------g~i 89 (325)
T d1pgua1 24 SYDPTTNAIAYPCGKSAFVRCLDDGD--SKVPPVVQFTGHG---SSVVTTVKFSPIKGSQYLCSGDES---------GKV 89 (325)
T ss_dssp EEETTTTEEEEEETTEEEEEECCSSC--CSSCSEEEECTTT---TSCEEEEEECSSTTCCEEEEEETT---------SEE
T ss_pred EECCCCCEEEEEeCCCEEEEEEeCCC--CCccceEEEeCCC---CCCEEEEEEeeCCCCCEEEEEeCC---------CCE
Confidence 35555677877754332344444332 21 22333221 23467788998 55665443332 356
Q ss_pred EEEEcCCCce-EEe--------eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCC
Q 004816 224 VAIALNGQNI-QVL--------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 294 (729)
Q Consensus 224 ~~~dl~~g~~-~~l--------t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~ 294 (729)
.++|+..++. ..+ ....+.....+|+|||++|+..+.+.. ..+.+++.+ +++. ...+.+..
T Consensus 90 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~------~~~~~~~~~-~~~~--~~~~~~h~- 159 (325)
T d1pgua1 90 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD------NFGVFISWD-SGNS--LGEVSGHS- 159 (325)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS------CSEEEEETT-TCCE--EEECCSCS-
T ss_pred EEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecccc------ceEEEEeec-cccc--ceeeeecc-
Confidence 6666654321 111 112234567899999999988774332 236677777 5654 44455554
Q ss_pred CccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEE
Q 004816 295 TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 373 (729)
Q Consensus 295 ~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~ 373 (729)
..+..+.|+|++. ++..... ++. +..++...++...-.......... ...+.|.| +++.++++..
T Consensus 160 ---~~v~~~~~~~~~~~~~~~~~~-d~~--v~~~d~~~~~~~~~~~~~~~~~~~-----v~~v~~~p---d~~~~l~s~~ 225 (325)
T d1pgua1 160 ---QRINACHLKQSRPMRSMTVGD-DGS--VVFYQGPPFKFSASDRTHHKQGSF-----VRDVEFSP---DSGEFVITVG 225 (325)
T ss_dssp ---SCEEEEEECSSSSCEEEEEET-TTE--EEEEETTTBEEEEEECSSSCTTCC-----EEEEEECS---TTCCEEEEEE
T ss_pred ---cccccccccccccceEEEeec-ccc--cccccccccccceecccccCCCCc-----cEEeeecc---ccceeccccc
Confidence 5566789999988 5555544 454 445676665543322111111111 12234443 5566777777
Q ss_pred ECCeEEEEEEECCCCce-EeeccCCcceE----EeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 374 QNGRSYLGILDDFGHSL-SLLDIPFTDID----NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 374 ~~g~~~ly~~d~~~g~~-~~lt~~~~~v~----~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.++...|| |..+++. +.+..+...+. .+...++.+++.++.+ ..+.++|+.+++.
T Consensus 226 ~d~~i~iw--d~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D---~~i~iwd~~~~~~ 285 (325)
T d1pgua1 226 SDRKISCF--DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD---ATIRVWDVTTSKC 285 (325)
T ss_dssp TTCCEEEE--ETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT---SEEEEEETTTTEE
T ss_pred cccceeee--eeccccccccccccccccccceeeeeccCCCEEEEEeCC---CeEEEEECCCCCE
Confidence 78876665 7766664 44443333332 2222344445555433 3577788887753
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.41 E-value=1.2e-07 Score=102.38 Aligned_cols=128 Identities=18% Similarity=0.136 Sum_probs=83.2
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cchhhhHHH-hhCCcEEEEecCCCCC-CCc--hhHHHhhcc
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYW-TSRGWAFVDVNYGGST-GYG--REFRERLLG 545 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~l-a~~G~~v~~~d~rGs~-g~g--~~~~~~~~~ 545 (729)
.|..-+|.|.... ..++.||+|++|||....... .+......+ ...+++||.+|||-+. |+- .+......+
T Consensus 80 CL~LnI~~P~~~~----~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~~~~~~~~~ 155 (517)
T d1ukca_ 80 CLFINVFKPSTAT----SQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDL 155 (517)
T ss_dssp CCEEEEEEETTCC----TTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSSCT
T ss_pred CCEEEEEeCCCCC----CCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccceeecCcccccccccc
Confidence 3555567776522 346789999999986433222 232222223 3567899999999521 110 111111122
Q ss_pred CCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh--C---CCcceEEEEecccc
Q 004816 546 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA--F---RDTFKAGASLYGVA 605 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~--~---~~~~~a~v~~~~~~ 605 (729)
++ -+.|...|++|+.++ ..-|+++|.|+|+|.||..+...+. . ..+|..+|+.+|..
T Consensus 156 N~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 156 NA---GLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp TH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred ch---hHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 33 389999999999886 3468999999999999998865553 2 24899999999854
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.40 E-value=8.8e-06 Score=81.37 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=46.3
Q ss_pred cccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 299 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 299 ~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
......+++++. +++.... .+..+|..+++........... ..+.|.+ |++++|... .++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~-----~v~v~d~~~~~~~~~~~~~~~~---------~~va~s~---DG~~l~v~~-~d~- 313 (346)
T d1jmxb_ 253 LYFTGLRSPKDPNQIYGVLN-----RLAKYDLKQRKLIKAANLDHTY---------YCVAFDK---KGDKLYLGG-TFN- 313 (346)
T ss_dssp CEEEEEECSSCTTEEEEEES-----EEEEEETTTTEEEEEEECSSCC---------CEEEECS---SSSCEEEES-BSS-
T ss_pred eeEEEEEeCCCCEEEEecCC-----eEEEEECCCCcEEEEEcCCCCE---------EEEEEcC---CCCEEEEEe-CCC-
Confidence 334567888877 6554432 5788899888765544322112 2345554 777776554 455
Q ss_pred EEEEEEECCCCce-EeeccC
Q 004816 378 SYLGILDDFGHSL-SLLDIP 396 (729)
Q Consensus 378 ~~ly~~d~~~g~~-~~lt~~ 396 (729)
.|.++|.++++. ..|..+
T Consensus 314 -~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 314 -DLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp -EEEEEETTTTEEEEEEECS
T ss_pred -cEEEEECccCCEEEEEECC
Confidence 477779888764 355443
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.39 E-value=1e-07 Score=103.51 Aligned_cols=128 Identities=20% Similarity=0.156 Sum_probs=84.8
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc--hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCC
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL--NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG 548 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~--~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~ 548 (729)
.|..-+|.|.. ..++.||+|++|||......... ......+++.+++||.+|||-+. +|--........-|
T Consensus 91 CL~LnI~~P~~------~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vvvVt~nYRlg~-~GFl~~~~~~~~~g 163 (532)
T d1ea5a_ 91 CLYLNIWVPSP------RPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGA-FGFLALHGSQEAPG 163 (532)
T ss_dssp CCEEEEEECSS------CCSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHH-HHHCCCTTCSSSCS
T ss_pred CCEEEEEeCCC------CCCCCcEEEEEEcCCcccccCCccccCcchhhcccCccEEEEeecccc-ccccccccccCCCC
Confidence 56666677865 25678999999998532221111 11223456789999999999521 11100000001112
Q ss_pred cccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEecccc
Q 004816 549 IVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 605 (729)
Q Consensus 549 ~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~ 605 (729)
..-+.|...|++|+.++ ..-|+++|.|+|+|+||..+..++. ....|..+|+.++..
T Consensus 164 N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 164 NVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred cccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 23489999999999886 3459999999999999999877765 345899999988754
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=1.2e-07 Score=103.27 Aligned_cols=128 Identities=19% Similarity=0.160 Sum_probs=84.1
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc---cccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~---~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
.|..-+|.|... ..++.||+|++|||..... ...+.. ....+..++.|+.+|||-+. +|--........-
T Consensus 96 CL~LnI~~P~~~-----~~~~lPV~v~ihGG~~~~gs~~~~~~~~-~~~~~~~~vvvVt~nYRlg~-~Gfl~~~~~~~~~ 168 (542)
T d2ha2a1 96 CLYLNVWTPYPR-----PASPTPVLIWIYGGGFYSGAASLDVYDG-RFLAQVEGAVLVSMNYRVGT-FGFLALPGSREAP 168 (542)
T ss_dssp CCEEEEEEESSC-----CSSCEEEEEEECCSTTTCCCTTSGGGCT-HHHHHHHCCEEEEECCCCHH-HHHCCCTTCSSCC
T ss_pred CCEEEEEecCCC-----CCCCCcEEEEEEECccccccCcccccCc-hhhhhhccceeEeeeeeccc-eeeecccccccCC
Confidence 456666778642 2567899999999854221 122222 22334579999999999411 1110000001111
Q ss_pred CcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEEecccc
Q 004816 548 GIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA 605 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---~~~~~a~v~~~~~~ 605 (729)
|..-+.|...|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...|..+|+.++..
T Consensus 169 gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 169 GNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 223489999999999875 34599999999999999999877762 35899999998743
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.37 E-value=9.8e-06 Score=80.69 Aligned_cols=256 Identities=9% Similarity=-0.058 Sum_probs=130.1
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEEC-----
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNY----- 162 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----- 162 (729)
..+.++.++| |+.+|.... ..+...+| +.. +++...-.... .............++++++.++....
T Consensus 34 ~~~~~i~~spDg~~l~v~~~---~~~~v~v~--D~~-t~~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~ 106 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVN---KSESLVKI--DLV-TGETLGRIDLS-TPEERVKSLFGAALSPDGKTLAIYESPVRLE 106 (337)
T ss_dssp TCCCCEEECTTSSEEEEEET---TTTEEEEE--ETT-TCCEEEEEECC-BTTEEEECTTCEEECTTSSEEEEEEEEEEEC
T ss_pred CCccEEEECCCCCEEEEEEC---CCCeEEEE--ECC-CCcEEEEEecC-CCcccccceeeEEEcCCCcEEEEeecCCcce
Confidence 3567899999 666665433 23554445 443 12332222111 00001111122334444445544432
Q ss_pred ------CCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 163 ------KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 163 ------~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
....+.++|..+ ++....... ........|+|||++++.. . ..+.++|..+++....
T Consensus 107 ~~~~~~~~~~~~~~d~~~--~~~~~~~~~----~~~~~~~~~s~dg~~l~~~-~----------~~~~~~d~~~~~~~~~ 169 (337)
T d1pbyb_ 107 LTHFEVQPTRVALYDAET--LSRRKAFEA----PRQITMLAWARDGSKLYGL-G----------RDLHVMDPEAGTLVED 169 (337)
T ss_dssp SSCEEECCCEEEEEETTT--TEEEEEEEC----CSSCCCEEECTTSSCEEEE-S----------SSEEEEETTTTEEEEE
T ss_pred eeeccccccceeeccccC--CeEEEeccc----cCCceEEEEcCCCCEEEEE-c----------CCcceeeeecCcEEEE
Confidence 234788888876 543332222 1223567899999987654 2 2366789888776544
Q ss_pred eeCCCeeeeeeeCCCCCeEEEEE------------ec-CCCCC---CCCcEEEEEEecCCCCeeeeEEecCCCCCccccc
Q 004816 237 VSGSDFYAFPRMDPRGERMAWIE------------WH-HPNMP---WDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 300 (729)
Q Consensus 237 t~~~~~~~~~~~SPDG~~la~~~------------~~-~~~~~---~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 300 (729)
...........++|++..+.... .. ..... .....++++++. ++......... .. ...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~----~~~ 243 (337)
T d1pbyb_ 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE-TGEMAMREVRI-MD----VFY 243 (337)
T ss_dssp ECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT-TCCEEEEEEEE-CS----SCE
T ss_pred eecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC-CCcEEEEEecC-CC----cce
Confidence 33322233345566665432111 00 00000 012347777777 56543322222 22 334
Q ss_pred cCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 301 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 301 ~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
....+++++.+++..+ ..|.++|+.+++........... ..+.|.+ |++.+|.. ..++. |
T Consensus 244 ~~~~~~~~~~~~~~~~-----~~i~v~d~~~~~~~~~~~~~~~~---------~~~~~s~---dG~~l~v~-~~~~~--i 303 (337)
T d1pbyb_ 244 FSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVPLPHSY---------YSVNVST---DGSTVWLG-GALGD--L 303 (337)
T ss_dssp EEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEECSSCC---------CEEEECT---TSCEEEEE-SBSSE--E
T ss_pred EEEEecccceEEEEcc-----ccEEEEECCCCcEEEEEcCCCCE---------EEEEECC---CCCEEEEE-eCCCc--E
Confidence 4567889988555543 35888899988765544322222 2344543 77767654 44554 7
Q ss_pred EEEECCCCce-Eeec
Q 004816 381 GILDDFGHSL-SLLD 394 (729)
Q Consensus 381 y~~d~~~g~~-~~lt 394 (729)
.++|.++++. ..|.
T Consensus 304 ~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 304 AAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEETTTCCEEEEEE
T ss_pred EEEECCCCcEEEEEE
Confidence 7778887653 3444
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=3.7e-05 Score=75.03 Aligned_cols=246 Identities=10% Similarity=0.022 Sum_probs=137.1
Q ss_pred CceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 147 ~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
+.+..++++ .++++...++.|.+||+.++ .....+... ...+....|+|+|..++...... .+..
T Consensus 20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~h----~~~V~~~~~~~~~~~~~~~~~~~---------~~~~ 85 (317)
T d1vyhc1 20 VTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGH----TDSVQDISFDHSGKLLASCSADM---------TIKL 85 (317)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCC----SSCEEEEEECTTSSEEEEEETTS---------CCCE
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCC-CEEEEEeCC----CCcEEEEeeeccccccccccccc---------cccc
Confidence 334444432 45667777889999999872 334444433 34567889999999877665433 3455
Q ss_pred EEcCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCce
Q 004816 226 IALNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 304 (729)
Q Consensus 226 ~dl~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (729)
.+....+...... .........|+||++.|+... ....+.++|+. ++.. ...+.... .....+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~~~~~~~~-~~~~--~~~~~~~~----~~~~~~~ 150 (317)
T d1vyhc1 86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS--------RDKTIKMWEVQ-TGYC--VKTFTGHR----EWVRMVR 150 (317)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE--------TTSEEEEEETT-TCCE--EEEEECCS----SCEEEEE
T ss_pred ccccccccccccccccccceeeeccCCCceEEeec--------cCcceeEeecc-ccee--eeEEccCC----Ccceeee
Confidence 5666555443332 334456678999999988666 23458888988 6654 33444443 4456778
Q ss_pred eCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCc-----------ceeeeeecCCCCEEEEEE
Q 004816 305 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGIN-----------SYEIIQSHGEKNLIACSY 372 (729)
Q Consensus 305 wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~-----------~~~~l~~~~~~~~l~~~s 372 (729)
|++|+++++.... .+ .+..++..+++..... .....+....|.+... ..... ..+.++++.
T Consensus 151 ~~~~~~~l~~~~~-d~--~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 223 (317)
T d1vyhc1 151 PNQDGTLIASCSN-DQ--TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG----KPGPFLLSG 223 (317)
T ss_dssp ECTTSSEEEEEET-TS--CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----------CCEEEEE
T ss_pred cccCCCEEEEEeC-CC--eEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeec----cCCceeEec
Confidence 9999995555443 34 3555566555433322 1111111111111100 01111 223455566
Q ss_pred EECCeEEEEEEECCCCce-EeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 373 RQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 373 ~~~g~~~ly~~d~~~g~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
..++...+ ++..+++. ..+......+..+ ..+++.+++.++.. ..+.++|+.+++.
T Consensus 224 ~~d~~i~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~ 281 (317)
T d1vyhc1 224 SRDKTIKM--WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD---KTLRVWDYKNKRC 281 (317)
T ss_dssp ETTSEEEE--EETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT---TEEEEECCTTSCC
T ss_pred cCCCEEEE--EECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECC---CeEEEEECCCCcE
Confidence 66665444 46666654 3444445566666 44455555555533 3678888877653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.36 E-value=2e-05 Score=77.20 Aligned_cols=232 Identities=10% Similarity=0.032 Sum_probs=127.0
Q ss_pred CceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 147 ~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
+.+++++++ ..+++...++.|.+||+.+ ++..+..... ....+...+|+|||+.++ +..+ ..+.+
T Consensus 15 V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~--~~~~~~~~~~--h~~~v~~v~~~~~g~~~~-~~~d---------~~v~~ 80 (299)
T d1nr0a2 15 ITALSSSADGKTLFSADAEGHINSWDIST--GISNRVFPDV--HATMITGIKTTSKGDLFT-VSWD---------DHLKV 80 (299)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEECSSCS--CSSCEEEEEECTTSCEEE-EETT---------TEEEE
T ss_pred cEEEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEEcCC--CCCcEEEEEeeccceeec-ccce---------eeEEE
Confidence 444555543 4566667788999999987 5544433210 134567888999998543 3322 35777
Q ss_pred EEcCCCceE---Ee-eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 226 IALNGQNIQ---VL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 226 ~dl~~g~~~---~l-t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
++..+.... .+ ...........|+|||+.++... + ..+.+++.. +. ...... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~--------~~i~~~~~~---~~--~~~~~~------~~~~ 140 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-Y--------KHIAIYSHG---KL--TEVPIS------YNSS 140 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-S--------SEEEEEETT---EE--EEEECS------SCEE
T ss_pred eccCCccccccccccccccccccccccccccccccccc-c--------ccccccccc---cc--cccccc------cccc
Confidence 777654321 11 12233445678999999776544 1 236666532 22 222222 2234
Q ss_pred CceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee--ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEE
Q 004816 302 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 379 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ 379 (729)
.++|+||+++++.... .+ .|..+|+++++...+. .....+. .+.|.+ +++ ++++...++...
T Consensus 141 ~~~~s~~~~~l~~g~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~---------~~~~~~---~~~-~l~~~~~d~~i~ 204 (299)
T d1nr0a2 141 CVALSNDKQFVAVGGQ-DS--KVHVYKLSGASVSEVKTIVHPAEIT---------SVAFSN---NGA-FLVATDQSRKVI 204 (299)
T ss_dssp EEEECTTSCEEEEEET-TS--EEEEEEEETTEEEEEEEEECSSCEE---------EEEECT---TSS-EEEEEETTSCEE
T ss_pred cccccccccccccccc-cc--ccccccccccccccccccccccccc---------cccccc---ccc-cccccccccccc
Confidence 5789999995545444 34 4666677777655443 2222222 233332 444 445555666544
Q ss_pred EEEEECCCCceEe----eccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 380 LGILDDFGHSLSL----LDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 380 ly~~d~~~g~~~~----lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+| +..++.... +......+..+ ..+++.+++.++.. ..++++|+..++.
T Consensus 205 ~~--~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d---g~i~iwd~~~~~~ 258 (299)
T d1nr0a2 205 PY--SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD---NSVIVWNMNKPSD 258 (299)
T ss_dssp EE--EGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTCTTS
T ss_pred cc--cccccccccccccccccccccccccccccccceEEEcCC---CEEEEEECCCCCc
Confidence 44 655554322 22223456666 44555566655543 3577778776653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=0.00017 Score=73.06 Aligned_cols=286 Identities=10% Similarity=-0.007 Sum_probs=143.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCc------c---cccccccCCceEEEECC-EE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYA------V---RTTAQEYGGGAFRIFGD-TV 157 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~------~---~~~~~~~~~~~~~~~~~-~i 157 (729)
..+.+++|+| |+.++ +. . ++...||....+ .....+...... . ....+...+.+.+++++ ..
T Consensus 63 ~~V~~l~fs~dg~~la-sg--~--d~~i~iW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLA-TG--C--NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp SCCCEEEECTTSSEEE-EE--C--BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred CcEEEEEECCCCCEEE-EE--e--CCeEEEEEeccc--ceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence 4578899999 65443 32 2 357778876543 111111111000 0 00011112334445433 45
Q ss_pred EEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee
Q 004816 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV 237 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt 237 (729)
+++...++.|.+++... ++........ ...+....|++++..++....+ ..+.++|..+.......
T Consensus 136 l~s~~~dg~v~i~~~~~--~~~~~~~~~h---~~~v~~~~~~~~~~~~~~~~~~---------~~i~~~d~~~~~~~~~~ 201 (388)
T d1erja_ 136 LATGAEDRLIRIWDIEN--RKIVMILQGH---EQDIYSLDYFPSGDKLVSGSGD---------RTVRIWDLRTGQCSLTL 201 (388)
T ss_dssp EEEEETTSCEEEEETTT--TEEEEEECCC---SSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEE
T ss_pred ceecccccccccccccc--cccccccccc---cccccccccccccccccccccc---------eeeeeeecccccccccc
Confidence 56666788899999876 4433322221 2446778899999987666543 46888899887665554
Q ss_pred eCCCeeeee-eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE-----ecCCCCCccccccCceeCCCCcE
Q 004816 238 SGSDFYAFP-RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-----VAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 238 ~~~~~~~~~-~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~wspDG~l 311 (729)
......... .+++||+.|+..+. ...|+++++. ++....... ..+.. ..+..+.|+|||++
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~~--------d~~i~i~~~~-~~~~~~~~~~~~~~~~~h~----~~v~~l~~s~~~~~ 268 (388)
T d1erja_ 202 SIEDGVTTVAVSPGDGKYIAAGSL--------DRAVRVWDSE-TGFLVERLDSENESGTGHK----DSVYSVVFTRDGQS 268 (388)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEET--------TSCEEEEETT-TCCEEEEEC------CCCS----SCEEEEEECTTSSE
T ss_pred ccccccccccccCCCCCeEEEEcC--------CCeEEEeecc-cCccceeeccccccccCCC----CCEEEEEECCCCCE
Confidence 444433334 44558888776552 2348889987 565321110 11112 34567889999995
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCcccc-CCcc---cccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS-RPLW---VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~-~~~w---~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
+++... .+ .|.++|..+++............ ...+ ......+.|.+ +++ ++++...+|.. +++|+.+
T Consensus 269 l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~-~l~sg~~dg~i--~vwd~~~ 339 (388)
T d1erja_ 269 VVSGSL-DR--SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ---NDE-YILSGSKDRGV--LFWDKKS 339 (388)
T ss_dssp EEEEET-TS--EEEEEEC---------------CEEEEEECCSSCEEEEEECG---GGC-EEEEEETTSEE--EEEETTT
T ss_pred EEEEEC-CC--cEEEEeccCCccccccccccccceeeecccccceEEEEEECC---CCC-EEEEEeCCCEE--EEEECCC
Confidence 445444 34 45555655443221110000000 0000 00112334442 444 55566667754 4457777
Q ss_pred Cce-EeeccCCcceEEe-------eeeCCEEEEEEeCC
Q 004816 388 HSL-SLLDIPFTDIDNI-------TLGNDCLFVEGASG 417 (729)
Q Consensus 388 g~~-~~lt~~~~~v~~~-------~~~~~~~~~~~~~~ 417 (729)
++. ..+......|..+ ..+++.+++.++.+
T Consensus 340 ~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~D 377 (388)
T d1erja_ 340 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377 (388)
T ss_dssp CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT
T ss_pred CcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCC
Confidence 664 4455555556555 13355666665543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.33 E-value=8.4e-06 Score=83.19 Aligned_cols=136 Identities=8% Similarity=-0.187 Sum_probs=84.8
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCC--CCCcE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP--WDKAE 271 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~--~~~~~ 271 (729)
.+...+|||++.+.+....... ..+||++|.++++....+.+.. ...+.|||||+.|++.+....... .....
T Consensus 23 ~~~a~~~~~~~~~v~~~~~~~g----~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~ 97 (368)
T d1mdah_ 23 CDHGPGAISRRSHITLPAYFAG----TTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp BCCCCCCCTTEEEEEECTTTCS----SEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred cccccCCCCcceeEEeeccCCC----cceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCccccccccCCe
Confidence 4445688999865444332211 2679999999998876665433 346899999999998874322111 12345
Q ss_pred EEEEEecCCCCeeeeEEecCCCC-CccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 272 LWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 272 l~~~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
|.++|.. +++.......+.... .-......+.|||||+ +++.... ...+.++|+.+++.....
T Consensus 98 v~v~D~~-t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~---~~~v~~~d~~~~~~~~~~ 162 (368)
T d1mdah_ 98 VEVFDPV-TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG---SSAAAGLSVPGASDDQLT 162 (368)
T ss_dssp EEEECTT-TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS---SSCEEEEEETTTEEEEEE
T ss_pred EEEEECC-CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC---CCeEEEEECCCCcEeEEe
Confidence 9999988 676533322222210 0002335688999999 6654332 246788899998876655
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.5e-05 Score=77.11 Aligned_cols=206 Identities=10% Similarity=0.094 Sum_probs=125.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCC---CCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAG---DEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~---g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (729)
+.+.++.+++ ++.+||++... + .|++....+. +....+.... +....+.++.|.++.|+|.+...
T Consensus 30 ~~~~~id~d~~~~~lYw~D~~~---~--~I~~~~l~~~~~~~~~~~~~~~~------~~~p~glAvD~~~~~lY~~d~~~ 98 (266)
T d1ijqa1 30 RNVVALDTEVASNRIYWSDLSQ---R--MICSTQLDRAHGVSSYDTVISRD------IQAPDGLAVDWIHSNIYWTDSVL 98 (266)
T ss_dssp SSEEEEEEETTTTEEEEEETTT---T--EEEEEEC--------CEEEECSS------CSCCCEEEEETTTTEEEEEETTT
T ss_pred CceEEEEEEeCCCEEEEEECCC---C--EEEEEEecCCCCCcceEEEEeCC------CCCcceEEEeeccceEEEEecCC
Confidence 3456778888 99999998532 2 4555544311 1112222211 11222334445588999998878
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFY 243 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~ 243 (729)
++|.+.++++ ...+.+.... .......+++|...+|+++.... ...|++.++++...+.+.. +....
T Consensus 99 ~~I~v~~~~g--~~~~~~~~~~---~~~P~~l~vd~~~g~ly~~~~~~-------~~~I~r~~~dGs~~~~l~~~~~~~p 166 (266)
T d1ijqa1 99 GTVSVADTKG--VKRKTLFREN---GSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLNGVDIYSLVTENIQWP 166 (266)
T ss_dssp TEEEEEETTS--SSEEEEEECT---TCCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCCEEEEECSSCSCE
T ss_pred CEEEeEecCC--ceEEEEEcCC---CCCcceEEEEcccCeEEEeccCC-------CcceeEeccCCCceeccccccccee
Confidence 8999999987 5544443331 23346778899888877774322 2579999999887777764 34556
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc-eeCCCCc-EEEEEecCCCc
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP-KWSSKGE-LFFVTDRKNGF 321 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~-~wspDG~-l~~~~~~~~g~ 321 (729)
.+.++.+++++|+|+... ...|..++++ +... ..+..... ....| ..+.++. |||. +. +.
T Consensus 167 ~gl~iD~~~~~lYw~d~~-------~~~I~~~~~d-G~~~--~~~~~~~~-----~~~~p~~lav~~~~ly~t-d~--~~ 228 (266)
T d1ijqa1 167 NGITLDLLSGRLYWVDSK-------LHSISSIDVN-GGNR--KTILEDEK-----RLAHPFSLAVFEDKVFWT-DI--IN 228 (266)
T ss_dssp EEEEEETTTTEEEEEETT-------TTEEEEEETT-SCSC--EEEEECTT-----TTSSEEEEEEETTEEEEE-ET--TT
T ss_pred eEEEeeccccEEEEecCC-------cCEEEEEECC-CCCE--EEEEeCCC-----cccccEEEEEECCEEEEE-EC--CC
Confidence 788999999999998632 3469999987 3332 22333221 11222 2334444 6665 33 34
Q ss_pred eEEEEEEcCCCeEE
Q 004816 322 WNLHKWIESNNEVL 335 (729)
Q Consensus 322 ~~l~~~d~~~g~~~ 335 (729)
..|++++..+|+..
T Consensus 229 ~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 229 EAIFSANRLTGSDV 242 (266)
T ss_dssp TEEEEEETTTCCCC
T ss_pred CeEEEEECCCCcce
Confidence 57999998776543
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.4e-07 Score=100.34 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=83.2
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hhhhHHH-hhCCcEEEEecCCCCCCCch---hHHHhhcc
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYW-TSRGWAFVDVNYGGSTGYGR---EFRERLLG 545 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~l-a~~G~~v~~~d~rGs~g~g~---~~~~~~~~ 545 (729)
.|..-+|.|.. ..++.||+|++|||......... ......+ ++.++.||.+|||-+. +|- +-.....+
T Consensus 89 CL~lnI~~P~~------~~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRlg~-~Gfl~~~~~~~~~g 161 (526)
T d1p0ia_ 89 CLYLNVWIPAP------KPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGA-LGFLALPGNPEAPG 161 (526)
T ss_dssp CCEEEEEEESS------CCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHH-HHHCCCTTCTTSCS
T ss_pred CCEEEEEeCCC------CCCCCceEEEEECCCcccccCcccccCccccccccceeEEeccccccc-ccccCCCCcccccc
Confidence 46666677865 35678999999998643222221 1112233 4569999999999421 110 00011222
Q ss_pred CCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEecccc
Q 004816 546 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 605 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~ 605 (729)
+ .-+.|...|++|+.++ ..-|+++|.|+|+|+||..+..++. ....|..+|+.++..
T Consensus 162 N---~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 162 N---MGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp C---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred c---ccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 3 3489999999999875 3458999999999999999876665 345799999887643
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.28 E-value=0.00016 Score=64.02 Aligned_cols=203 Identities=15% Similarity=0.139 Sum_probs=130.9
Q ss_pred ECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-C
Q 004816 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-Q 231 (729)
Q Consensus 153 ~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g 231 (729)
.++.+++.....|.+-.+-+.+ ++..+||..+ -....+| .+.=.+|.|+++...... .+.||..++.. |
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g--~~~vkLtkeP---I~~~~~P--k~~ldfi~f~RDV~kGkE---~Hai~~~Nlk~~G 93 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDG--GETVKLNREP---INSVLDP--HYGVGRVILVRDVSKGAE---QHALFKVNTSRPG 93 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESS--SSCEECCSSC---CSEECEE--CTTBSEEEEEEECSTTSC---CEEEEEEETTSTT
T ss_pred cCCcEEEEEeccceEEEEEEeC--CEEEEEeccc---ccCcCCC--ccCcceEEEEeehhcCcc---eeeEEEEccCCCC
Confidence 3566777765566444444456 7889999763 1111222 223357999998664322 47899999973 6
Q ss_pred ceEEeeeCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC--
Q 004816 232 NIQVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK-- 308 (729)
Q Consensus 232 ~~~~lt~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD-- 308 (729)
+..++.... -...+ ..-|++.|+|+...+ +.+.||++ + +|++++...++.. .|-.|
T Consensus 94 EE~~i~spk~vRI~S--~~yddk~vvF~Gase-----d~~~LYvi--e-gGklrkL~~vPpF-----------sFVtDI~ 152 (313)
T d2hu7a1 94 EEQRLEAVKPMRILS--GVDTGEAVVFTGATE-----DRVALYAL--D-GGGLRELARLPGF-----------GFVSDIR 152 (313)
T ss_dssp CEEECTTSCSBEEEE--EEECSSCEEEEEECS-----SCEEEEEE--E-TTEEEEEEEESSC-----------EEEEEEE
T ss_pred eeeEecCCceEEEEE--eeecCceEEEecccC-----CceEEEEE--e-CCceeeeccCCCc-----------ceEEecc
Confidence 677775432 23332 334899999999655 34556666 4 7887665555544 22222
Q ss_pred Cc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
|+ ++=..--..+...++..|+.+|..+.+++.++.+..+... .+..+.--.+.-|...+..+|+.+
T Consensus 153 ~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~-------------~gnKV~sdyEt~gEsywit~D~~s 219 (313)
T d2hu7a1 153 GDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASIS-------------PGMKVTAGLETAREARLVTVDPRD 219 (313)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEEEEEEC-------------TTSCEEEEEEESSCEEEEEECTTT
T ss_pred CCeEEEEeeecCCcceEEEEecccCCEEEecCCCCcccceeEc-------------cCceeeeccCCCCceEEEEEeccc
Confidence 44 3323222244566889999999999999888777666555 455666666777887777889999
Q ss_pred CceEeeccCCcc
Q 004816 388 HSLSLLDIPFTD 399 (729)
Q Consensus 388 g~~~~lt~~~~~ 399 (729)
++.+.+.-+..+
T Consensus 220 ~~yerve~P~kd 231 (313)
T d2hu7a1 220 GSVEDLELPSKD 231 (313)
T ss_dssp CCEEECCCSSCH
T ss_pred CceeeeecCccc
Confidence 999998877544
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.28 E-value=2.4e-07 Score=101.37 Aligned_cols=114 Identities=19% Similarity=0.211 Sum_probs=77.2
Q ss_pred CCCCCEEEEEcCCCCCCcccc-chhhhHHHhh-CCcEEEEecCCCCCCCch---------hHHHhhccCCCcccHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGI-LNLSIQYWTS-RGWAFVDVNYGGSTGYGR---------EFRERLLGRWGIVDVNDCCS 557 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~-~~~~~~~la~-~G~~v~~~d~rGs~g~g~---------~~~~~~~~~~~~~~~~D~~~ 557 (729)
.++.||+|++|||........ .......+++ .+.+||.+|||-+. +|- +......+++ -+.|...
T Consensus 136 ~~~lPV~V~ihGG~f~~Gs~~~~~~~~~~l~~~~~vVvVtinYRlg~-fGFl~~~~~~~~~~~~~~~gN~---Gl~Dq~~ 211 (571)
T d1dx4a_ 136 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGA-FGFLHLAPEMPSEFAEEAPGNV---GLWDQAL 211 (571)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTH-HHHCCCGGGSCGGGTTSSCSCH---HHHHHHH
T ss_pred CCCCeEEEEEeCCCccCCCCcccccchhhhhhcCCeeEEeecceecc-ccccccccccccccccCCCCcc---cchHHHH
Confidence 578899999999854222211 1112234544 46999999999521 221 1111122333 4899999
Q ss_pred HHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccccC
Q 004816 558 CATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVAD 606 (729)
Q Consensus 558 ~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~d 606 (729)
|++|+.++ ..-|+++|.|+|+|+||..+..++. ....|+.+|+.++...
T Consensus 212 AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 212 AIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 99999886 3458999999999999999976665 3458999998887543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.27 E-value=5.8e-05 Score=75.23 Aligned_cols=210 Identities=8% Similarity=-0.004 Sum_probs=113.2
Q ss_pred ccCceEEcC-CC-cEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEE--CCEEEEEEC-CC
Q 004816 90 RLGGTAVDG-HG-RLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNY-KD 164 (729)
Q Consensus 90 ~~~~~~~~p-g~-~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~-~~ 164 (729)
.+..++|+| +. .+..... .+|...||....+ .....+. ......-..+......+.++ +..++.... .+
T Consensus 65 ~v~~v~fsP~~~g~~lasgs---~Dg~i~iWd~~~~--~~~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~ 138 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGD---ESGKVIVWGWTFD--KESNSVE-VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEE---TTSEEEEEEEEEE--GGGTEEE-EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred CEEEEEEeeCCCCCEEEEEe---CCCCEEEeeecCC--cceeeee-cccccccccccCcEEEEEECCCCCccceeecccc
Confidence 467889998 43 4433332 4678888876433 1111110 00000001111122334444 335544443 34
Q ss_pred CcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-e---C
Q 004816 165 QRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-S---G 239 (729)
Q Consensus 165 ~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~---~ 239 (729)
..+.+++.++ ++ ...+... ...+....|+|++..++.+...+ ..+.+++...++...-. . .
T Consensus 139 ~~~~~~~~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~d--------~~v~~~d~~~~~~~~~~~~~~~~ 204 (325)
T d1pgua1 139 NFGVFISWDS--GNSLGEVSGH----SQRINACHLKQSRPMRSMTVGDD--------GSVVFYQGPPFKFSASDRTHHKQ 204 (325)
T ss_dssp CSEEEEETTT--CCEEEECCSC----SSCEEEEEECSSSSCEEEEEETT--------TEEEEEETTTBEEEEEECSSSCT
T ss_pred ceEEEEeecc--cccceeeeec----ccccccccccccccceEEEeecc--------cccccccccccccceecccccCC
Confidence 4677777776 44 3344433 34567788999998766655433 46788888766543322 1 2
Q ss_pred CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC---CCCcEEEEEe
Q 004816 240 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS---SKGELFFVTD 316 (729)
Q Consensus 240 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws---pDG~l~~~~~ 316 (729)
.......+|+||+..++.+...+ ..|.++|+. +++. +..+.+.. ..+....|+ +||+++....
T Consensus 205 ~~~v~~v~~~pd~~~~l~s~~~d-------~~i~iwd~~-~~~~--~~~l~~~~----~~v~~~~~s~~~~dg~~l~s~s 270 (325)
T d1pgua1 205 GSFVRDVEFSPDSGEFVITVGSD-------RKISCFDGK-SGEF--LKYIEDDQ----EPVQGGIFALSWLDSQKFATVG 270 (325)
T ss_dssp TCCEEEEEECSTTCCEEEEEETT-------CCEEEEETT-TCCE--EEECCBTT----BCCCSCEEEEEESSSSEEEEEE
T ss_pred CCccEEeeeccccceeccccccc-------cceeeeeec-cccc--cccccccc----cccccceeeeeccCCCEEEEEe
Confidence 23456789999865554444222 338889988 6765 44555443 334445555 7888443433
Q ss_pred cCCCceEEEEEEcCCCeEEE
Q 004816 317 RKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 317 ~~~g~~~l~~~d~~~g~~~~ 336 (729)
. .+ .|.++|+.+++...
T Consensus 271 ~-D~--~i~iwd~~~~~~~~ 287 (325)
T d1pgua1 271 A-DA--TIRVWDVTTSKCVQ 287 (325)
T ss_dssp T-TS--EEEEEETTTTEEEE
T ss_pred C-CC--eEEEEECCCCCEEE
Confidence 3 34 46667888887543
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=1.2e-07 Score=104.00 Aligned_cols=128 Identities=19% Similarity=0.198 Sum_probs=82.9
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc---cccch----hhhHHHhhC-CcEEEEecCCCCCCCch--hHH
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILN----LSIQYWTSR-GWAFVDVNYGGSTGYGR--EFR 540 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~---~~~~~----~~~~~la~~-G~~v~~~d~rGs~g~g~--~~~ 540 (729)
.|..-+|.|.... ...++.||+|++|||..... ...+. .....++.. +++||.+|||-+. +|- ...
T Consensus 80 CL~LNI~~P~~~~---~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~-~GFl~~~~ 155 (579)
T d2bcea_ 80 CLYLNIWVPQGRK---EVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGP-LGFLSTGD 155 (579)
T ss_dssp CCEEEEEEEECSS---SCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHH-HHHCCCSS
T ss_pred CCEEEEEECCCCC---CCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccc-cccccccc
Confidence 4566667775421 02467899999999853211 11111 112445554 6999999999421 110 001
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEecccc
Q 004816 541 ERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 605 (729)
Q Consensus 541 ~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~ 605 (729)
....+++| +.|...|++|+.++ ..-|+++|.|+|+|.||..+..++. ....|+.+|+.+|..
T Consensus 156 ~~~~gN~G---l~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 156 SNLPGNYG---LWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp TTCCCCHH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred cCCCccch---hhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 11223333 89999999999886 3469999999999999999876664 456899999998743
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.24 E-value=6.2e-05 Score=72.50 Aligned_cols=200 Identities=13% Similarity=0.092 Sum_probs=129.0
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
|.+..+.|+|++...+.|++.++++ +..+.+.... -....+.+++.-++.|+++... ...|.+++++
T Consensus 43 ~D~~~~~iywsd~~~~~I~~~~l~g--~~~~~v~~~~---~~~p~~iAvD~~~~~lY~~d~~--------~~~I~~~~~d 109 (263)
T d1npea_ 43 FDCVDKVVYWTDISEPSIGRASLHG--GEPTTIIRQD---LGSPEGIALDHLGRTIFWTDSQ--------LDRIEVAKMD 109 (263)
T ss_dssp EETTTTEEEEEETTTTEEEEEESSS--CCCEEEECTT---CCCEEEEEEETTTTEEEEEETT--------TTEEEEEETT
T ss_pred EEeCCCEEEEEECCCCeEEEEEccc--CCcEEEEEec---cccccEEEEeccCCeEEEeccC--------CCEEEEEecC
Confidence 3334778999888888999999987 6555554321 1234667787778887776432 2579999999
Q ss_pred CCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 230 GQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 230 ~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
+...+.|.. +.....+.+..|...+|+|+.+.. ....|+.++++ +... ..+....- ..+..++..+.
T Consensus 110 g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-----~~~~I~r~~~d-G~~~--~~i~~~~~----~~P~glaiD~~ 177 (263)
T d1npea_ 110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-----DNPKIETSHMD-GTNR--RILAQDNL----GLPNGLTFDAF 177 (263)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-----SSCEEEEEETT-SCCC--EEEECTTC----SCEEEEEEETT
T ss_pred CceEEEEecccccCCcEEEEecccCcEEEeecCC-----CCcEEEEecCC-CCCc--eeeeeecc----cccceEEEeec
Confidence 877666644 334556778999999999887543 23469999987 3322 22332221 33356677777
Q ss_pred Cc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
++ |||.- . +...|.+++.+++..+.+.... ..| + .+.+ +++.|||+.. +...|++++..+
T Consensus 178 ~~~lYw~d-~--~~~~I~~~~~~g~~~~~v~~~~---~~P-~-----~lav-----~~~~lYwtd~--~~~~I~~~~~~~ 238 (263)
T d1npea_ 178 SSQLCWVD-A--GTHRAECLNPAQPGRRKVLEGL---QYP-F-----AVTS-----YGKNLYYTDW--KTNSVIAMDLAI 238 (263)
T ss_dssp TTEEEEEE-T--TTTEEEEEETTEEEEEEEEECC---CSE-E-----EEEE-----ETTEEEEEET--TTTEEEEEETTT
T ss_pred CcEEEEEe-C--CCCEEEEEECCCCCeEEEECCC---CCc-E-----EEEE-----ECCEEEEEEC--CCCEEEEEECCC
Confidence 76 77663 2 4567999999887766665321 111 1 2233 5678888864 344689999887
Q ss_pred CceEee
Q 004816 388 HSLSLL 393 (729)
Q Consensus 388 g~~~~l 393 (729)
++...+
T Consensus 239 g~~~~~ 244 (263)
T d1npea_ 239 SKEMDT 244 (263)
T ss_dssp TEEEEE
T ss_pred CccceE
Confidence 775444
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=5.7e-05 Score=74.87 Aligned_cols=225 Identities=12% Similarity=0.031 Sum_probs=119.6
Q ss_pred CceEEEECC-EEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 147 ~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+.+.+++++ ..+++...++.|.+||+.+ ++. ..+... ...+...+|+|+|+.++....+.. +.
T Consensus 58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~--~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~~d~~---------i~ 122 (340)
T d1tbga_ 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYT--TNKVHAIPLR----SSWVMTCAYAPSGNYVACGGLDNI---------CS 122 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTT--TEEEEEEECS----CSCEEEEEECTTSSEEEEEETTCC---------EE
T ss_pred EEEEEECCCCCEEEEEECCCceeeeeccc--ceeEEEEecc----cccEEeeEeeccceeeeeecccce---------ee
Confidence 344445433 4566667788999999987 443 333332 245678899999998877654321 11
Q ss_pred EEEcCCC---------------------------------------------ceEEe-eeCCCeeeeeeeCCCCCeEEEE
Q 004816 225 AIALNGQ---------------------------------------------NIQVL-VSGSDFYAFPRMDPRGERMAWI 258 (729)
Q Consensus 225 ~~dl~~g---------------------------------------------~~~~l-t~~~~~~~~~~~SPDG~~la~~ 258 (729)
.++.... ..... ...........+.+++..++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 1111110 00000 0001112334556666655433
Q ss_pred EecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 259 EWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 259 ~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
. ....|.++|+. +++. ...+.+.. ..+..++|+|||+++++... .+ .+..++....+.....
T Consensus 203 ~--------~d~~v~i~d~~-~~~~--~~~~~~h~----~~i~~v~~~p~~~~l~s~s~-d~--~i~~~~~~~~~~~~~~ 264 (340)
T d1tbga_ 203 A--------CDASAKLWDVR-EGMC--RQTFTGHE----SDINAICFFPNGNAFATGSD-DA--TCRLFDLRADQELMTY 264 (340)
T ss_dssp E--------TTTEEEEEETT-TTEE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TS--CEEEEETTTTEEEEEE
T ss_pred e--------cCceEEEEECC-CCcE--EEEEeCCC----CCeEEEEECCCCCEEEEEeC-CC--eEEEEeeccccccccc
Confidence 3 23458888987 5654 44455554 55677899999995444443 34 3555677666544433
Q ss_pred ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-EeeccCCcceEEe-eeeCCEEEEEEeC
Q 004816 339 SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 339 ~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~ 416 (729)
...... .....+.|.+ ++ .++++...+|...|| |+.+++. ..+......|..+ ..+++.+++.++.
T Consensus 265 ~~~~~~------~~i~~~~~s~---~~-~~l~~g~~dg~i~iw--d~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 265 SHDNII------CGITSVSFSK---SG-RLLLAGYDDFNCNVW--DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp CCTTCC------SCEEEEEECS---SS-CEEEEEETTSCEEEE--ETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred cccccc------CceEEEEECC---CC-CEEEEEECCCEEEEE--ECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence 211110 0112334442 44 455666667765554 7766654 3454445667777 4445555555553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.23 E-value=5.9e-05 Score=74.46 Aligned_cols=203 Identities=13% Similarity=-0.002 Sum_probs=109.5
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
..+++++|||+ |+++ +.. ...|++++.+ |+.+.+........+.+|+|||+ |+++.+.. ..+
T Consensus 30 ~e~iAv~pdG~-l~vt-~~~-------~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~-------~~~ 91 (302)
T d2p4oa1 30 LENLASAPDGT-IFVT-NHE-------VGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNA-------DSI 91 (302)
T ss_dssp EEEEEECTTSC-EEEE-ETT-------TTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECT-------TSC
T ss_pred cCCEEECCCCC-EEEE-eCC-------CCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCC-------ceE
Confidence 45788999998 4444 322 2579999987 45666666666778889999998 55555332 236
Q ss_pred EEEEecC-CCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccC--ccccCCcc
Q 004816 273 WVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSRPLW 349 (729)
Q Consensus 273 ~~~d~~~-~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~--~~~~~~~w 349 (729)
++++... .+........... .....+.+.+||++++. +. +...++++++.++......... ........
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~-----~~~n~i~~~~~g~~~v~-~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (302)
T d2p4oa1 92 PVVSLVKSDGTVETLLTLPDA-----IFLNGITPLSDTQYLTA-DS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 163 (302)
T ss_dssp EEEEEECTTSCEEEEEECTTC-----SCEEEEEESSSSEEEEE-ET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred EEEEecccccceeeccccCCc-----cccceeEEccCCCEEee-cc--ccccceeeeccCCcceeEecCCccceeeccCc
Confidence 6666652 2333222222221 33456788899976544 33 4468999999888765543211 11101111
Q ss_pred cccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEe---eccCCcceEEe-eeeCCEEEEEEeCCCCCceEEE
Q 004816 350 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL---LDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~---lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
....+.+.+ +++.+|+... +...||+++.++..... +.......+.+ ...++.+++..... .++++
T Consensus 164 ~~~~ngi~~-----~~~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~---~~V~~ 233 (302)
T d2p4oa1 164 FPAANGLKR-----FGNFLYVSNT--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIY---NSVVR 233 (302)
T ss_dssp SCSEEEEEE-----ETTEEEEEET--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTT---CCEEE
T ss_pred ccccccccc-----cCCceeeecC--CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCC---CcEEE
Confidence 111122333 4566766553 44567888776543211 11111222334 33344444333222 36888
Q ss_pred EEcCCC
Q 004816 426 VTLDDH 431 (729)
Q Consensus 426 ~d~~~~ 431 (729)
++.++.
T Consensus 234 i~p~G~ 239 (302)
T d2p4oa1 234 IAPDRS 239 (302)
T ss_dssp ECTTCC
T ss_pred ECCCCC
Confidence 876654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.22 E-value=5.7e-05 Score=76.82 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=47.9
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCce
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 322 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~ 322 (729)
..+..|||||++|+.... ....|++++.+.++............++ .....+.++|||+++|+.+...+
T Consensus 147 ~h~v~~sPdG~~l~v~d~-------g~d~v~~~~~~~~g~~~~~~~~~~~~~g--~gPr~i~f~pdg~~~yv~~e~~~-- 215 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADL-------TANKLWTHRKLASGEVELVGSVDAPDPG--DHPRWVAMHPTGNYLYALMEAGN-- 215 (365)
T ss_dssp EEEEEECTTSSEEEEEET-------TTTEEEEEEECTTSCEEEEEEEECSSTT--CCEEEEEECTTSSEEEEEETTTT--
T ss_pred ceEEEECCCCCEEEEeeC-------CCCEEEEEEccCCCceeeccceeecCCC--CceEEEEECCCCceEEEeccCCC--
Confidence 346789999999987652 1245888887645554333222222111 44567899999996666665233
Q ss_pred EEEEEEcCCC
Q 004816 323 NLHKWIESNN 332 (729)
Q Consensus 323 ~l~~~d~~~g 332 (729)
.|.+++.+++
T Consensus 216 ~V~v~~~~~~ 225 (365)
T d1jofa_ 216 RICEYVIDPA 225 (365)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEecCC
Confidence 4555555443
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.21 E-value=1.9e-06 Score=71.92 Aligned_cols=90 Identities=12% Similarity=-0.050 Sum_probs=59.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++...- .-|.||++||.. .. +.+. .+.+|.|+++|+||.+.+... .
T Consensus 9 ~G~~l~y~~~G------------~G~pvlllHG~~-~~-------w~~~-L~~~yrvi~~DlpG~G~S~~p-------~- 59 (122)
T d2dsta1 9 YGLNLVFDRVG------------KGPPVLLVAEEA-SR-------WPEA-LPEGYAFYLLDLPGYGRTEGP-------R- 59 (122)
T ss_dssp TTEEEEEEEEC------------CSSEEEEESSSG-GG-------CCSC-CCTTSEEEEECCTTSTTCCCC-------C-
T ss_pred CCEEEEEEEEc------------CCCcEEEEeccc-cc-------cccc-ccCCeEEEEEeccccCCCCCc-------c-
Confidence 78888865542 236688899852 11 1222 357999999999976543211 1
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
...+++.+.+..+++.- +.++..++|||+||.+++.++.
T Consensus 60 --~s~~~~a~~i~~ll~~L--~i~~~~viG~S~Gg~ia~~laa 98 (122)
T d2dsta1 60 --MAPEELAHFVAGFAVMM--NLGAPWVLLRGLGLALGPHLEA 98 (122)
T ss_dssp --CCHHHHHHHHHHHHHHT--TCCSCEEEECGGGGGGHHHHHH
T ss_pred --cccchhHHHHHHHHHHh--CCCCcEEEEeCccHHHHHHHHh
Confidence 23455555555555542 4568999999999999998887
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.19 E-value=0.00014 Score=72.07 Aligned_cols=229 Identities=13% Similarity=0.109 Sum_probs=121.3
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCC-CceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC--C
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS--D 241 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~-~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~--~ 241 (729)
++|+++++++ +....+...... .........++|||+.|+ +.+.. ..|++++.+++....+.... .
T Consensus 46 g~I~r~d~~~--~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~-vad~~--------~~i~~~~~~g~~~~~~~~~~~g~ 114 (314)
T d1pjxa_ 46 GEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMR--------LGLLVVQTDGTFEEIAKKDSEGR 114 (314)
T ss_dssp CEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETT--------TEEEEEETTSCEEECCSBCTTSC
T ss_pred CEEEEEECCC--CcEEEEECCccccCCCcceeEEEeCCCCEEE-EEECC--------CeEEEEeCCCcEEEEEecccccc
Confidence 5799999987 654444322100 011235678999999754 44322 46899999876544443221 1
Q ss_pred ---eeeeeeeCCCCCeEEEEEecCCCCCC--------CCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 242 ---FYAFPRMDPRGERMAWIEWHHPNMPW--------DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 242 ---~~~~~~~SPDG~~la~~~~~~~~~~~--------~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
..+...+.|||+ |+++........+ ....||.++.+ |+... +..+. .....++|+||+.
T Consensus 115 ~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~~--~~~~~-----~~pNGi~~~~d~d 184 (314)
T d1pjxa_ 115 RMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQ--VDTAF-----QFPNGIAVRHMND 184 (314)
T ss_dssp BCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEE--EEEEE-----SSEEEEEEEECTT
T ss_pred ccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeec--CceeE--eeCCc-----ceeeeeEECCCCC
Confidence 234568999996 7776532111111 23468887754 55422 22221 2234678988753
Q ss_pred ----EEEEEecCCCceEEEEEEcCC-CeEE--Eee-ccCc-cccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEE
Q 004816 311 ----LFFVTDRKNGFWNLHKWIESN-NEVL--AIY-SLDA-EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 381 (729)
Q Consensus 311 ----l~~~~~~~~g~~~l~~~d~~~-g~~~--~l~-~~~~-~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly 381 (729)
.+|+++. ...+|++++++. +... .+. .... ... ..+.+.+. .++.||++.. +...|+
T Consensus 185 ~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~------~pdGiavD----~~GnlyVa~~--~~g~I~ 250 (314)
T d1pjxa_ 185 GRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEG------GADGMDFD----EDNNLLVANW--GSSHIE 250 (314)
T ss_dssp SCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSC------EEEEEEEB----TTCCEEEEEE--TTTEEE
T ss_pred cceeEEEEEee--cccceEEeeccCccccceeeEEEEccccccc------cceeeEEe----cCCcEEEEEc--CCCEEE
Confidence 4556554 456788877543 3322 111 1110 000 11233342 3445666543 334788
Q ss_pred EEECCCCce-EeeccCCcceEEe-e-eeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 382 ILDDFGHSL-SLLDIPFTDIDNI-T-LGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 382 ~~d~~~g~~-~~lt~~~~~v~~~-~-~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
++++++++. ..+..+.....++ . .+++.+++..+ . ...||++++...
T Consensus 251 ~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~-~--~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH-E--NNAVWKFEWQRN 300 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET-T--TTEEEEEECSSC
T ss_pred EEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC-C--CCcEEEEECCCC
Confidence 899988874 3455554455555 3 33444544433 2 257888886553
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=98.18 E-value=1.1e-06 Score=86.68 Aligned_cols=112 Identities=11% Similarity=-0.026 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
...|+++++||.-.+........+...+.. .+++|+++|++... ...|..+.... ....+.+...+++|.++..+
T Consensus 68 ~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a--~~~Y~~a~~n~--~~Vg~~ia~~i~~l~~~~g~ 143 (337)
T d1rp1a2 68 TDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGS--QTSYTQAANNV--RVVGAQVAQMLSMLSANYSY 143 (337)
T ss_dssp TTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHH--SSCHHHHHHHH--HHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeecccc--CcchHHHHHHH--HHHHHHHHHHHHHHHHhcCC
Confidence 457999999998554443333444444444 56999999996321 11222221100 01135667778888777678
Q ss_pred CCCcEEEEEcChHHHHHHHHHhCCCcceEEEEecccc
Q 004816 569 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVA 605 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~ 605 (729)
+.+++.|+|||+||++|..+..+..++..++.+.|..
T Consensus 144 ~~~~vhlIGhSLGAhvAG~aG~~~~~l~rItgLDPA~ 180 (337)
T d1rp1a2 144 SPSQVQLIGHSLGAHVAGEAGSRTPGLGRITGLDPVE 180 (337)
T ss_dssp CGGGEEEEEETHHHHHHHHHHHTSTTCCEEEEESCCC
T ss_pred ChhheEEEeecHHHhhhHHHHHhhccccceeccCCCc
Confidence 8999999999999999988877666788888887754
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.17 E-value=0.0019 Score=57.01 Aligned_cols=278 Identities=14% Similarity=0.095 Sum_probs=165.6
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECC-CC----cEEEEeCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK-DQ----RLYKHSID 173 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~----~l~~~d~~ 173 (729)
++.+.++.. ..|...++.+..+ +.+.|+-++.+....-+. + =+.+.|..+- .| .||..++.
T Consensus 25 ~d~ll~~~~---seG~vni~~l~g~---~~vkLtkePI~~~~~Pk~-~-------ldfi~f~RDV~kGkE~Hai~~~Nlk 90 (313)
T d2hu7a1 25 GDKLLVVGF---SEGSVNAYLYDGG---ETVKLNREPINSVLDPHY-G-------VGRVILVRDVSKGAEQHALFKVNTS 90 (313)
T ss_dssp TTEEEEEEE---ETTEEEEEEESSS---SCEECCSSCCSEECEECT-T-------BSEEEEEEECSTTSCCEEEEEEETT
T ss_pred CCcEEEEEe---ccceEEEEEEeCC---EEEEEecccccCcCCCcc-C-------cceEEEEeehhcCcceeeEEEEccC
Confidence 454555543 2466777777543 788888766432211110 1 1246666543 22 68999987
Q ss_pred CCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCC
Q 004816 174 SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGE 253 (729)
Q Consensus 174 ~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~ 253 (729)
.. |+..+|... .+.|....+. |++.|+|+-.... ...||+++ +|+.+.|+.-+.+..--.. .|+
T Consensus 91 ~~-GEE~~i~sp---k~vRI~S~~y--ddk~vvF~Gased------~~~LYvie--gGklrkL~~vPpFsFVtDI--~~d 154 (313)
T d2hu7a1 91 RP-GEEQRLEAV---KPMRILSGVD--TGEAVVFTGATED------RVALYALD--GGGLRELARLPGFGFVSDI--RGD 154 (313)
T ss_dssp ST-TCEEECTTS---CSBEEEEEEE--CSSCEEEEEECSS------CEEEEEEE--TTEEEEEEEESSCEEEEEE--ETT
T ss_pred CC-CeeeEecCC---ceEEEEEeee--cCceEEEecccCC------ceEEEEEe--CCceeeeccCCCcceEEec--cCC
Confidence 43 566777765 2366655444 8999999865442 35677765 6889988764433211122 367
Q ss_pred eEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCe
Q 004816 254 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE 333 (729)
Q Consensus 254 ~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~ 333 (729)
+|+=...-..+ ...+++.|+. +|. .+++...+ +++..+..+++.++.---.. .+...+..+|+++++
T Consensus 155 ~I~G~g~~~g~----~~sfF~adl~-SG~---lri~tpke----GS~~~ay~~~gnKV~sdyEt-~gEsywit~D~~s~~ 221 (313)
T d2hu7a1 155 LIAGLGFFGGG----RVSLFTSNLS-SGG---LRVFDSGE----GSFSSASISPGMKVTAGLET-AREARLVTVDPRDGS 221 (313)
T ss_dssp EEEEEEEEETT----EEEEEEEETT-TEE---EEEECCSS----EEEEEEEECTTSCEEEEEEE-SSCEEEEEECTTTCC
T ss_pred eEEEEeeecCC----cceEEEEecc-cCC---EEEecCCC----CcccceeEccCceeeeccCC-CCceEEEEEecccCc
Confidence 77654433222 3458999997 565 45665555 78888999998876222122 344444477999998
Q ss_pred EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEeeeeCCEEEEE
Q 004816 334 VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVE 413 (729)
Q Consensus 334 ~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~ 413 (729)
...+.-...++..-.- ....++..+ .++.++..+.++|+..|+. ++ +.+..+...+.....=++.+++.
T Consensus 222 yerve~P~kd~~sy~p-~~I~~~~Y~----Pdd~L~iiakrdG~s~lF~---nG---k~in~p~G~~~gat~i~~~iyfs 290 (313)
T d2hu7a1 222 VEDLELPSKDFSSYRP-TAITWLGYL----PDGRLAVVARREGRSAVFI---DG---ERVEAPQGNHGRVVLWRGKLVTS 290 (313)
T ss_dssp EEECCCSSCHHHHHCC-SEEEEEEEC----TTSCEEEEEEETTEEEEEE---TT---EEECCCSSEEEEEEEETTEEEEE
T ss_pred eeeeecCcccceeecc-eEEEeeeeC----CCCcEEEEEecCCchheee---cc---eEecCCCCcccceEEECCEEEEe
Confidence 8877522222211100 011122344 3445767788999999983 33 34556666666665567889999
Q ss_pred EeCCCCCceEEEEEcCCCc
Q 004816 414 GASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 414 ~~~~~~~~~ly~~d~~~~~ 432 (729)
.++-.+|..+..+ .+|+
T Consensus 291 hsSL~tP~kI~~~--~~~~ 307 (313)
T d2hu7a1 291 HTSLSTPPRIVSL--PSGE 307 (313)
T ss_dssp EEETTEEEEEEEE--TTCC
T ss_pred ecccCCCceeEEc--CCCC
Confidence 9998888876553 4565
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.12 E-value=0.00037 Score=70.53 Aligned_cols=247 Identities=11% Similarity=0.002 Sum_probs=126.6
Q ss_pred CCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCC-eecCCCC--------------CCCceeeecceecCCCCEEEEEE
Q 004816 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDY--------------GEPLVSYADGIFDPRFNRYVTVR 209 (729)
Q Consensus 146 ~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~--------------~~~~~~~~~~~~SPdG~~l~~~~ 209 (729)
.+.+.+++.+ .++.+. .++.|.+|++.+ ++. ..+.... ......+...+|||||+.|+...
T Consensus 64 ~V~~l~fs~dg~~lasg-~d~~i~iW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATG-CNKTTQVYRVSD--GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp CCCEEEECTTSSEEEEE-CBSCEEEEETTT--CCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCCEEEEE-eCCeEEEEEecc--cceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 3445555533 344444 467899999876 432 2222110 00112356788999999877655
Q ss_pred eccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE
Q 004816 210 EDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC 288 (729)
Q Consensus 210 ~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~ 288 (729)
.+ ..|.+++...++...... .........|++++..++... ....+.++|.. +... ...
T Consensus 141 ~d---------g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~--------~~~~i~~~d~~-~~~~--~~~ 200 (388)
T d1erja_ 141 ED---------RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS--------GDRTVRIWDLR-TGQC--SLT 200 (388)
T ss_dssp TT---------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--------TTSEEEEEETT-TTEE--EEE
T ss_pred cc---------cccccccccccccccccccccccccccccccccccccccc--------cceeeeeeecc-cccc--ccc
Confidence 43 358888988876654443 344566789999999887665 23458888887 4443 222
Q ss_pred ecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCE
Q 004816 289 VAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNL 367 (729)
Q Consensus 289 ~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 367 (729)
..... .......+.+|+++++.... .+ .|.+++..+++..... ......... ......+.|.+ +++
T Consensus 201 ~~~~~----~~~~~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~---~~~- 267 (388)
T d1erja_ 201 LSIED----GVTTVAVSPGDGKYIAAGSL-DR--AVRVWDSETGFLVERLDSENESGTGH--KDSVYSVVFTR---DGQ- 267 (388)
T ss_dssp EECSS----CEEEEEECSTTCCEEEEEET-TS--CEEEEETTTCCEEEEEC------CCC--SSCEEEEEECT---TSS-
T ss_pred ccccc----ccccccccCCCCCeEEEEcC-CC--eEEEeecccCccceeeccccccccCC--CCCEEEEEECC---CCC-
Confidence 22222 12222234457775555444 34 4666777776543322 111000000 00112344442 444
Q ss_pred EEEEEEECCeEEEEEEECCCCceEe-------------eccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 368 IACSYRQNGRSYLGILDDFGHSLSL-------------LDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 368 l~~~s~~~g~~~ly~~d~~~g~~~~-------------lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
++++...+|...+|- +.++.... .......+..+ ..+++.+++.++.. ..++.+|+.+++.
T Consensus 268 ~l~s~~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~ 342 (388)
T d1erja_ 268 SVVSGSLDRSVKLWN--LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD---RGVLFWDKKSGNP 342 (388)
T ss_dssp EEEEEETTSEEEEEE--C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT---SEEEEEETTTCCE
T ss_pred EEEEEECCCcEEEEe--ccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC---CEEEEEECCCCcE
Confidence 445666677666664 33332211 11122334555 34445555555543 3688888887764
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.10 E-value=2.4e-05 Score=77.79 Aligned_cols=139 Identities=13% Similarity=-0.011 Sum_probs=90.8
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
.+++....++.|.+||+.+ ++. ..+... ...+...+|+|||+.|+....+ ..|.++++......
T Consensus 197 ~~~~~~~~d~~v~i~d~~~--~~~~~~~~~h----~~~i~~v~~~p~~~~l~s~s~d---------~~i~~~~~~~~~~~ 261 (340)
T d1tbga_ 197 RLFVSGACDASAKLWDVRE--GMCRQTFTGH----ESDINAICFFPNGNAFATGSDD---------ATCRLFDLRADQEL 261 (340)
T ss_dssp SEEEEEETTTEEEEEETTT--TEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEE
T ss_pred ceeEEeecCceEEEEECCC--CcEEEEEeCC----CCCeEEEEECCCCCEEEEEeCC---------CeEEEEeecccccc
Confidence 3445555677899999886 443 333333 2446778899999987665543 35888899876554
Q ss_pred Eeee---CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 235 VLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 235 ~lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
.... .........|+|||+.|+..+ . ...|+++|+. +++. ...+.++. ..+..++|+|||++
T Consensus 262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~-------dg~i~iwd~~-~~~~--~~~~~~H~----~~V~~l~~s~d~~~ 326 (340)
T d1tbga_ 262 MTYSHDNIICGITSVSFSKSGRLLLAGY-D-------DFNCNVWDAL-KADR--AGVLAGHD----NRVSCLGVTDDGMA 326 (340)
T ss_dssp EEECCTTCCSCEEEEEECSSSCEEEEEE-T-------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECTTSSC
T ss_pred cccccccccCceEEEEECCCCCEEEEEE-C-------CCEEEEEECC-CCcE--EEEEcCCC----CCEEEEEEeCCCCE
Confidence 4332 223356789999999887655 2 2349999988 6765 55566665 56678899999994
Q ss_pred EEEEecCCCceEEE
Q 004816 312 FFVTDRKNGFWNLH 325 (729)
Q Consensus 312 ~~~~~~~~g~~~l~ 325 (729)
+++... +|.-.||
T Consensus 327 l~s~s~-Dg~v~iW 339 (340)
T d1tbga_ 327 VATGSW-DSFLKIW 339 (340)
T ss_dssp EEEEET-TSCEEEE
T ss_pred EEEEcc-CCEEEEe
Confidence 444444 3544443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.07 E-value=0.00063 Score=68.72 Aligned_cols=170 Identities=11% Similarity=0.005 Sum_probs=87.8
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
...++||||+.|+.+... .-..|.++.+++...... ..........++|||+.++.+..... ...+
T Consensus 43 s~la~s~d~~~ly~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~-----~~~v 109 (365)
T d1jofa_ 43 SWMTFDHERKNIYGAAMK--------KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQP-----PYAV 109 (365)
T ss_dssp SEEEECTTSSEEEEEEBT--------EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSST-----TCCE
T ss_pred CEEEEcCCCCEEEEEeCC--------cEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCC-----CCEE
Confidence 447799999987665432 245777887665433332 22233445688999998765553221 2234
Q ss_pred EEEEecC------------CCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcC-CCeEEEeec
Q 004816 273 WVGYISE------------NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEVLAIYS 339 (729)
Q Consensus 273 ~~~d~~~------------~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~-~g~~~~l~~ 339 (729)
+.+.+.. .+.............. ..+..+.|+|||+.+|+.+. +...|++++.+ +++...+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~h~h~v~~sPdG~~l~v~d~--g~d~v~~~~~~~~g~~~~~~~ 185 (365)
T d1jofa_ 110 YANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQEN--TGIHGMVFDPTETYLYSADL--TANKLWTHRKLASGEVELVGS 185 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTT--CCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCEEEEEE
T ss_pred EEeEccCCCCcceeEeeeecceecCcccCcccCCC--CcceEEEECCCCCEEEEeeC--CCCEEEEEEccCCCceeeccc
Confidence 4444331 2222111111111101 34567889999995566665 43455555432 343332221
Q ss_pred cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 340 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 340 ~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
.. .+.-..+...+.|.+ +++.+|+..+.++...+|.++..+
T Consensus 186 ~~----~~~~g~gPr~i~f~p---dg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 186 VD----APDPGDHPRWVAMHP---TGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EE----CSSTTCCEEEEEECT---TSSEEEEEETTTTEEEEEEECTTT
T ss_pred ee----ecCCCCceEEEEECC---CCceEEEeccCCCEEEEEEecCCC
Confidence 11 000011233455654 777777777667766666665443
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.94 E-value=5.9e-06 Score=81.26 Aligned_cols=112 Identities=12% Similarity=-0.016 Sum_probs=74.7
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
...|+++++||.-.+........+...+.+ ..++|+++|+..... ..|..+.... ...-+.+...+++|.....+
T Consensus 68 ~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~--~~Y~~a~~n~--~~Vg~~ia~~i~~l~~~~g~ 143 (338)
T d1bu8a2 68 LDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSR--TEYTQASYNT--RVVGAEIAFLVQVLSTEMGY 143 (338)
T ss_dssp TTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHS--SCHHHHHHHH--HHHHHHHHHHHHHHHHHHCC
T ss_pred CCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhcc--cchHHHHHhH--HHHHHHHHHHHHHHHHhcCC
Confidence 467999999997544444334444444444 569999999964211 1232222110 01134456677777766667
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
+.+++.++|||+|+++|..+.. ...++..++.+.|..
T Consensus 144 ~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 144 SPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp CGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 8999999999999999998887 566788888887754
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.90 E-value=9.6e-05 Score=75.74 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=91.1
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCC--CCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~--~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
.+..++++.++++...++.|.+||+.+ ++.. .+... -......+...+|||||+.|+....+.. ...|.
T Consensus 188 ~~v~~s~dg~lasgs~Dg~i~iwd~~~--~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t------~~~i~ 259 (393)
T d1sq9a_ 188 TSVDISERGLIATGFNNGTVQISELST--LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS------FGCIT 259 (393)
T ss_dssp CEEEECTTSEEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT------EEEEE
T ss_pred EEEEECCCCEEEEEeCCCcEEEEeecc--cccccccccccccccccceEEEcccccccceeeeecCCCC------cceee
Confidence 345566666677777888999999987 4321 11110 0001245678889999999877765542 23577
Q ss_pred EEEcCCCceEEeee--------------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec
Q 004816 225 AIALNGQNIQVLVS--------------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA 290 (729)
Q Consensus 225 ~~dl~~g~~~~lt~--------------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~ 290 (729)
++|+++++...... ........+|||||++|+-.+ ....|.++|++ +|+. +..+.
T Consensus 260 lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s--------~D~~v~vWd~~-~g~~--~~~l~ 328 (393)
T d1sq9a_ 260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG--------WDGKLRFWDVK-TKER--ITTLN 328 (393)
T ss_dssp EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE--------TTSEEEEEETT-TTEE--EEEEE
T ss_pred ecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC--------CCCEEEEEECC-CCCE--EEEEC
Confidence 88999876543221 123466789999999887555 23459999998 7865 55566
Q ss_pred CCCCCccccccCceeCCCCc
Q 004816 291 GFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 291 ~~~~~~~~~~~~~~wspDG~ 310 (729)
++..........+.|+++|.
T Consensus 329 gH~~~v~~~~~~~~~~~~~~ 348 (393)
T d1sq9a_ 329 MHCDDIEIEEDILAVDEHGD 348 (393)
T ss_dssp CCGGGCSSGGGCCCBCTTSC
T ss_pred CcCCcccCCccEEEECCCCC
Confidence 55311001223578999987
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.78 E-value=0.0093 Score=58.16 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=122.9
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccC-------C-C---
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR-------Q-D--- 215 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~-------~-~--- 215 (729)
+.+..++++..+++...++.|.+++... ........... .........++|+++.++....+.. . .
T Consensus 56 V~~l~~s~~~~l~s~s~D~~i~iw~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~ 132 (355)
T d1nexb2 56 VWALKYAHGGILVSGSTDRTVRVWDIKK--GCCTHVFEGHN-STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 132 (355)
T ss_dssp EEEEEEETTTEEEEEETTCCEEEEETTT--TEEEEEECCCS-SCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----
T ss_pred EEEEEEcCCCEEEEEecccccccccccc--ccccccccccc-ccccccccccccccceeeeecCCCcEEEEEccCCceec
Confidence 4455666666677777888999999876 43322222111 1233344557778877665543211 0 0
Q ss_pred --------------CC-----------------------------CcceEEEEEEcCCCceEEeee-CCCeeeeeeeCCC
Q 004816 216 --------------AL-----------------------------NSTTEIVAIALNGQNIQVLVS-GSDFYAFPRMDPR 251 (729)
Q Consensus 216 --------------~~-----------------------------~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~~~SPD 251 (729)
+. .....+..+|+.+++...... .........|+|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (355)
T d1nexb2 133 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 212 (355)
T ss_dssp ------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred cccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccccccccc
Confidence 00 001123444554443322222 2233445678888
Q ss_pred CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCC
Q 004816 252 GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 252 G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~ 331 (729)
++.++.... ...|.++|+. ++.. ...+.+.. ..+..+.|+ +++++.... .| .|.++|..+
T Consensus 213 ~~~~~~~~~--------d~~i~i~d~~-~~~~--~~~~~~h~----~~v~~~~~~--~~~l~~~~~-dg--~i~iwd~~~ 272 (355)
T d1nexb2 213 RKRCISASM--------DTTIRIWDLE-NGEL--MYTLQGHT----ALVGLLRLS--DKFLVSAAA-DG--SIRGWDAND 272 (355)
T ss_dssp TTEEEEEET--------TSCEEEEETT-TCCE--EEEECCCS----SCCCEEEEC--SSEEEEECT-TS--EEEEEETTT
T ss_pred ceeeecccc--------cceEEeeecc-cccc--cccccccc----ccccccccc--cceeeeeec-cc--ccccccccc
Confidence 888776552 2348888887 6654 44455554 445556665 454444443 34 466678877
Q ss_pred CeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE--eeccCCcceEEeeeeCCE
Q 004816 332 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS--LLDIPFTDIDNITLGNDC 409 (729)
Q Consensus 332 g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~--~lt~~~~~v~~~~~~~~~ 409 (729)
+......... ....-.+ +. .++.++.+. .+|. |.++|+++|+.. .+..+...|..+..+++.
T Consensus 273 ~~~~~~~~~~-~~~~~~~--------~~----~~~~~l~~g-~d~~--i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~ 336 (355)
T d1nexb2 273 YSRKFSYHHT-NLSAITT--------FY----VSDNILVSG-SENQ--FNIYNLRSGKLVHANILKDADQIWSVNFKGKT 336 (355)
T ss_dssp CCEEEEEECT-TCCCCCE--------EE----ECSSEEEEE-ETTE--EEEEETTTCCBCCSCTTTTCSEEEEEEEETTE
T ss_pred cceecccccC-CceEEEE--------Ec----CCCCEEEEE-eCCE--EEEEECCCCCEEEEEecCCCCCEEEEEEcCCe
Confidence 6543322211 1111111 11 334455444 3664 555688887753 233344567777545566
Q ss_pred EEEEEeCCCCCceEEEEE
Q 004816 410 LFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 410 ~~~~~~~~~~~~~ly~~d 427 (729)
+++..+ .++..-|+.+|
T Consensus 337 ~~~~~s-~dg~~~l~~~d 353 (355)
T d1nexb2 337 LVAAVE-KDGQSFLEILD 353 (355)
T ss_dssp EEEEEE-SSSCEEEEEEE
T ss_pred EEEEEE-CCCcEEEEEEe
Confidence 554444 33333355554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.68 E-value=0.0021 Score=61.91 Aligned_cols=246 Identities=12% Similarity=0.055 Sum_probs=122.4
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEE-ECCCCcE
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS-NYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l 167 (729)
..+.+++++|.+.||..+.. ..| |..++.+ |+....+............+.+..+..+.+..++. ......|
T Consensus 23 ~~P~gvavd~dg~i~VaD~~---n~r--I~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i 95 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTN---NHR--IQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 95 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGG---GTE--EEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CCccEEEEcCCCCEEEEECC---CCE--EEEEeCC--CCEEEEecccCCCcccccccccccccccccccceeccCCcccc
Confidence 35678899985668877642 233 5455555 33222222111111111111111122222333333 3334578
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee--CCCeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS--GSDFYAF 245 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~--~~~~~~~ 245 (729)
.+++..+ ...+.+.... .......++.++|+.++. +.. ...+++++.++...+.+.. .......
T Consensus 96 ~~~~~~g--~~~~~~~~~~---~~~p~~~avd~~G~i~v~--~~~-------~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 161 (279)
T d1q7fa_ 96 QIYNQYG--QFVRKFGATI---LQHPRGVTVDNKGRIIVV--ECK-------VMRVIIFDQNGNVLHKFGCSKHLEFPNG 161 (279)
T ss_dssp EEECTTS--CEEEEECTTT---CSCEEEEEECTTSCEEEE--ETT-------TTEEEEECTTSCEEEEEECTTTCSSEEE
T ss_pred ccccccc--cceeecCCCc---ccccceeccccCCcEEEE--eec-------cceeeEeccCCceeecccccccccccce
Confidence 8888764 4333332220 123356778899984332 222 2568888887654444422 2233455
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 325 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~ 325 (729)
.+.+++|+ |+++.. ....|++++.+ |+. ...+...... .....++..++|++++ ++. .+...|.
T Consensus 162 i~~d~~g~-i~v~d~-------~~~~V~~~d~~--G~~--~~~~g~~g~~--~~P~giavD~~G~i~V-ad~-~~~~~v~ 225 (279)
T d1q7fa_ 162 VVVNDKQE-IFISDN-------RAHCVKVFNYE--GQY--LRQIGGEGIT--NYPIGVGINSNGEILI-ADN-HNNFNLT 225 (279)
T ss_dssp EEECSSSE-EEEEEG-------GGTEEEEEETT--CCE--EEEESCTTTS--CSEEEEEECTTCCEEE-EEC-SSSCEEE
T ss_pred eeecccee-EEeeec-------cccceeeeecC--Cce--eeeecccccc--cCCcccccccCCeEEE-EEC-CCCcEEE
Confidence 67888886 655553 24569999865 553 2233221101 2345568899998554 443 3445688
Q ss_pred EEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 326 KWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 326 ~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
++++++.-.+.+.... .... ...+.+. .++.||++ +.+...++|++
T Consensus 226 ~f~~~G~~~~~~~~~~-~~~~------p~~vav~----~dG~l~V~-~~n~~v~~fr~ 271 (279)
T d1q7fa_ 226 IFTQDGQLISALESKV-KHAQ------CFDVALM----DDGSVVLA-SKDYRLYIYRY 271 (279)
T ss_dssp EECTTSCEEEEEEESS-CCSC------EEEEEEE----TTTEEEEE-ETTTEEEEEEC
T ss_pred EECCCCCEEEEEeCCC-CCCC------EeEEEEe----CCCcEEEE-eCCCeEEEEEe
Confidence 8887544334433211 1111 1233444 44566654 45666667765
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.00091 Score=69.71 Aligned_cols=136 Identities=12% Similarity=0.105 Sum_probs=84.9
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch----------------hhhHHHhhCCcEE
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN----------------LSIQYWTSRGWAF 524 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~----------------~~~~~la~~G~~v 524 (729)
-.+... ++..+..|++...+ ..+..|+++++-|||++......- ..-..|.+. .++
T Consensus 24 Gyl~~~-~~~~lffw~~~s~~------~~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~-anl 95 (452)
T d1ivya_ 24 GYLKSS-GSKHLHYWFVESQK------DPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLI-ANV 95 (452)
T ss_dssp EEEECS-TTEEEEEEEECCSS------CGGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGS-SEE
T ss_pred eeeecC-CCceEEEEEEEcCC------CCCCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcc-cCE
Confidence 345555 67889989887654 134679999999999865432110 001112222 678
Q ss_pred EEecCCCCCCCchhHHHhhccCCCc---ccHHHHHHHH-HHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-----CCCcc
Q 004816 525 VDVNYGGSTGYGREFRERLLGRWGI---VDVNDCCSCA-TFLVGSGKADEKRLCITGGSAGGYTTLAALA-----FRDTF 595 (729)
Q Consensus 525 ~~~d~rGs~g~g~~~~~~~~~~~~~---~~~~D~~~~~-~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-----~~~~~ 595 (729)
+.+|.+-+.|+...-. ..... ....|+..++ +++...+.....++.|.|-||||..+-.++. ..-.+
T Consensus 96 lfIDqPvGtGfS~~~~----~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l 171 (452)
T d1ivya_ 96 LYLESPAGVGFSYSDD----KFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNL 171 (452)
T ss_dssp EEECCSTTSTTCEESS----CCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCE
T ss_pred EEEecCCCcccccCCC----CCCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccc
Confidence 9999765566554311 11111 1245555554 4555555555678999999999998866664 22358
Q ss_pred eEEEEeccccChh
Q 004816 596 KAGASLYGVADLS 608 (729)
Q Consensus 596 ~a~v~~~~~~d~~ 608 (729)
+++++.+|+.|..
T Consensus 172 ~Gi~igng~~d~~ 184 (452)
T d1ivya_ 172 QGLAVGNGLSSYE 184 (452)
T ss_dssp EEEEEESCCSBHH
T ss_pred cceEcCCCccCch
Confidence 9999999988753
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.0051 Score=58.35 Aligned_cols=202 Identities=16% Similarity=0.155 Sum_probs=103.4
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~ 168 (729)
.|.++++++.+.+|+++... .++ +.+.+.++ ..+.+.... . ...+-+ ++++.+ .|++.. ..+.+.
T Consensus 15 ~P~~vavd~dG~i~v~~~~~--~~~--i~~~~~~~--~~~~~~~~~-~----~~~p~g--vav~~~g~i~v~d-~~~~~i 80 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGM--YGR--VVKLATGS--TGTTVLPFN-G----LYQPQG--LAVDGAGTVYVTD-FNNRVV 80 (260)
T ss_dssp CEEEEEECTTCCEEEEECSS--SCE--EEEEC------CEEECCCC-S----CCSCCC--EEECTTCCEEEEE-TTTEEE
T ss_pred CCCEEEEcCCCCEEEEEcCC--CCE--EEEEcCCC--ceEEEeccC-C----ccCceE--EEEcCCCCEEEee-eeecee
Confidence 56788999866788876432 233 55555441 222232211 0 011112 333333 444443 444444
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-eCCCeeeeee
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-SGSDFYAFPR 247 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~~~~~~~~~~ 247 (729)
.+...+ .....+.... .....+.+++++|+. + +.+.. ...+++++..+....... .+.....+.+
T Consensus 81 ~~~~~~--~~~~~~~~~~---~~~p~~iavd~~g~i-~-v~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 81 TLAAGS--NNQTVLPFDG---LNYPEGLAVDTQGAV-Y-VADRG-------NNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp EECTTC--SCCEECCCCS---CCSEEEEEECTTCCE-E-EEEGG-------GTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred eeeeec--cceeeeeeee---eeeccccccccccee-E-eeccc-------cccccccccccceeeeeeecccCCcceee
Confidence 444333 3333333221 123467789999983 3 33322 246888888765544432 2333445678
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEE
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKW 327 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~ 327 (729)
++|+|+ |+++.. ....|+.++.+ +.. ........ - .....+++.++|+|++. +. +..+|+++
T Consensus 147 ~~~~g~-~~v~~~-------~~~~i~~~d~~-~~~---~~~~~~~~-~--~~p~gi~~d~~g~l~vs-d~--~~~~i~~~ 208 (260)
T d1rwia_ 147 VDNSGN-VYVTDT-------DNNRVVKLEAE-SNN---QVVLPFTD-I--TAPWGIAVDEAGTVYVT-EH--NTNQVVKL 208 (260)
T ss_dssp ECTTCC-EEEEEG-------GGTEEEEECTT-TCC---EEECCCSS-C--CSEEEEEECTTCCEEEE-ET--TTTEEEEE
T ss_pred ecCCCC-Eeeecc-------ccccccccccc-cce---eeeeeccc-c--CCCccceeeeeeeeeee-ec--CCCEEEEE
Confidence 899997 655542 34568888866 222 12222111 0 33456788889876544 43 34568888
Q ss_pred EcCCCeEEEe
Q 004816 328 IESNNEVLAI 337 (729)
Q Consensus 328 d~~~g~~~~l 337 (729)
+++++..+.+
T Consensus 209 ~~~~~~~~~~ 218 (260)
T d1rwia_ 209 LAGSTTSTVL 218 (260)
T ss_dssp CTTCSCCEEC
T ss_pred eCCCCeEEEE
Confidence 8876654443
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.61 E-value=0.00016 Score=69.06 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCCCCCCcc-ccchhhhHHHhhC--CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHH-HHHHHhC
Q 004816 490 EKPPLLVKSHGGPTSEAR-GILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGS 565 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~-~~~~~~~~~la~~--G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~ 565 (729)
.+.| ||++||-.++... ..+......+.++ |+.|..+++.... ......... ..+++..+. .+.+.+.
T Consensus 4 ~P~P-VVLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~--~~~~~~~~~-----~~~~~~~e~v~~~I~~~ 75 (279)
T d1ei9a_ 4 APLP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTL--REDVENSFF-----LNVNSQVTTVCQILAKD 75 (279)
T ss_dssp SSCC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSH--HHHHHHHHH-----SCHHHHHHHHHHHHHSC
T ss_pred CCCc-EEEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCc--ccccccchh-----hhHHHHHHHHHHHHHhc
Confidence 3456 6678997444322 3455566666665 9999999984211 111111111 113333333 3344332
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CC-CcceEEEEecc
Q 004816 566 GKADEKRLCITGGSAGGYTTLAALA-FR-DTFKAGASLYG 603 (729)
Q Consensus 566 ~~~d~~ri~i~G~S~GG~~a~~~~~-~~-~~~~a~v~~~~ 603 (729)
. ...++|-++|||+||.++-.++. .+ ..+...|.+++
T Consensus 76 ~-~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgs 114 (279)
T d1ei9a_ 76 P-KLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp G-GGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred c-ccccceeEEEEccccHHHHHHHHHcCCCCcceEEEECC
Confidence 2 22468999999999999988887 43 35777777654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.52 E-value=0.00012 Score=75.18 Aligned_cols=104 Identities=12% Similarity=-0.089 Sum_probs=63.1
Q ss_pred ecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC--CCeeeeeeeCCCCCeEEEEEecCCCCCC--C-----
Q 004816 198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPW--D----- 268 (729)
Q Consensus 198 ~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~--~~~~~~~~~SPDG~~la~~~~~~~~~~~--~----- 268 (729)
.+|||++| |+.+.. ..+|-++|+++++..++..- .....+.++||||+++++....+...+. +
T Consensus 79 gtpDGr~l-fV~d~~-------~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~ 150 (441)
T d1qnia2 79 GRYDGKYL-FINDKA-------NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS 150 (441)
T ss_dssp TEEEEEEE-EEEETT-------TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred ccCCCCEE-EEEcCC-------CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence 57999985 555543 36799999999988776542 2334567999999988766543322111 0
Q ss_pred ----CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec
Q 004816 269 ----KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 317 (729)
Q Consensus 269 ----~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~ 317 (729)
...+-.+|.. +.+....... + ..+..+.++|||+.+|++..
T Consensus 151 ~~~~~~~~~~iD~~-t~~v~~qI~v-~------~~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 151 LDNSYTMFTAIDAE-TMDVAWQVIV-D------GNLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp GGGEEEEEEEEETT-TCSEEEEEEE-S------SCCCCEEECSSSSEEEEEES
T ss_pred cccccceEEeecCc-cceeeEEEec-C------CCccceEECCCCCEEEEEec
Confidence 1123345555 4443322222 2 23467899999995555544
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.45 E-value=0.0012 Score=63.37 Aligned_cols=191 Identities=9% Similarity=-0.036 Sum_probs=98.7
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 273 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~ 273 (729)
....++++|..++.... ..+++++..+++......... ...+++|+++.++....+. ..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~-------~~v~ 144 (287)
T d1pgua2 84 KVASANNDGFTAVLTND----------DDLLILQSFTGDIIKSVRLNS--PGSAVSLSQNYVAVGLEEG-------NTIQ 144 (287)
T ss_dssp EEEEECSSSEEEEEETT----------SEEEEEETTTCCEEEEEECSS--CEEEEEECSSEEEEEETTT-------SCEE
T ss_pred eeeeeccCCceEEEeec----------ccceeeeccceeeeeeccccc--eeeeeeccCcceeeecccc-------ceee
Confidence 34567888876554322 357888888776544433222 2246788999888766322 2377
Q ss_pred EEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee--ccCccccCCcccc
Q 004816 274 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVF 351 (729)
Q Consensus 274 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w~~ 351 (729)
++++. +.+. ......... ..+..++|+|||++++.... .+ .|..+|..+++..... .....+....|.+
T Consensus 145 ~~~~~-~~~~-~~~~~~~~~----~~v~~~~~s~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p 215 (287)
T d1pgua2 145 VFKLS-DLEV-SFDLKTPLR----AKPSYISISPSETYIAAGDV-MG--KILLYDLQSREVKTSRWAFRTSKINAISWKP 215 (287)
T ss_dssp EEETT-EEEE-EEECSSCCS----SCEEEEEECTTSSEEEEEET-TS--CEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred eeecc-ccce-eeeeeeccC----CceeEEEeccCccccccccc-cc--cccceeecccccccccccccccccceeeecc
Confidence 77765 2221 111112222 34567899999995555544 34 3556677776643321 1122233334544
Q ss_pred cCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeC
Q 004816 352 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 352 ~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~ 416 (729)
......... .+..++++...++...||-+.......+.+......|..+ ..+++. ++.++.
T Consensus 216 ~~~~~~~~~---~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~ 277 (287)
T d1pgua2 216 AEKGANEEE---IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGA 277 (287)
T ss_dssp CC------C---CSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEET
T ss_pred ccccccccc---CCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEEC
Confidence 322211111 3344566667777666654322222344444445667777 455555 444443
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.43 E-value=0.00077 Score=68.67 Aligned_cols=120 Identities=11% Similarity=0.056 Sum_probs=76.2
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-------CCCeeeeeeeCCCCCeEEEEEecCCCCC
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-------GSDFYAFPRMDPRGERMAWIEWHHPNMP 266 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-------~~~~~~~~~~SPDG~~la~~~~~~~~~~ 266 (729)
....||||| .| ++...+ ..|.++|+.+++...... ........+|||||+.|+..+.+..
T Consensus 188 ~~v~~s~dg-~l-asgs~D--------g~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t--- 254 (393)
T d1sq9a_ 188 TSVDISERG-LI-ATGFNN--------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS--- 254 (393)
T ss_dssp CEEEECTTS-EE-EEECTT--------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT---
T ss_pred EEEEECCCC-EE-EEEeCC--------CcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCC---
Confidence 457899998 33 343332 468899999876543222 2345667899999999987764432
Q ss_pred CCCcEEEEEEecCCCCeeeeEEec-------------CCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCe
Q 004816 267 WDKAELWVGYISENGDVYKRVCVA-------------GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE 333 (729)
Q Consensus 267 ~~~~~l~~~d~~~~g~~~~~~~~~-------------~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~ 333 (729)
...|.++|++ +|+.. ..+. ++. ..+..++|+|||++++.... .+ .|.++|.++|+
T Consensus 255 --~~~i~lwd~~-~g~~~--~~l~~~~~~~~~~~~~~gH~----~~V~~l~fspd~~~l~S~s~-D~--~v~vWd~~~g~ 322 (393)
T d1sq9a_ 255 --FGCITLYETE-FGERI--GSLSVPTHSSQASLGEFAHS----SWVMSLSFNDSGETLCSAGW-DG--KLRFWDVKTKE 322 (393)
T ss_dssp --EEEEEEEETT-TCCEE--EEECBC--------CCBSBS----SCEEEEEECSSSSEEEEEET-TS--EEEEEETTTTE
T ss_pred --cceeeecccc-cceee--eeeccccccccceeeeeccc----CceeeeccCCCCCeeEEECC-CC--EEEEEECCCCC
Confidence 2347788888 66542 2221 222 34567899999996555544 34 56667888887
Q ss_pred EEEee
Q 004816 334 VLAIY 338 (729)
Q Consensus 334 ~~~l~ 338 (729)
.....
T Consensus 323 ~~~~l 327 (393)
T d1sq9a_ 323 RITTL 327 (393)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65444
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.38 E-value=0.0014 Score=66.95 Aligned_cols=106 Identities=12% Similarity=0.025 Sum_probs=64.3
Q ss_pred EEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCC----------CCCCcc
Q 004816 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ----------DALNST 220 (729)
Q Consensus 151 ~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~----------~~~~~~ 220 (729)
.++|+.++..+..+++|.++|+++ .+..++...+. .......+++|||++++........ ......
T Consensus 80 tpDGr~lfV~d~~~~rVavIDl~t--~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~ 155 (441)
T d1qnia2 80 RYDGKYLFINDKANTRVARIRLDI--MKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSY 155 (441)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTT--TEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEE
T ss_pred cCCCCEEEEEcCCCCEEEEEECCC--CcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCccccccccccc
Confidence 456666666666777999999998 76655432211 1233567899999975544322110 001112
Q ss_pred eEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEec
Q 004816 221 TEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWH 261 (729)
Q Consensus 221 ~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~ 261 (729)
..+-.+|.++.+.. ++.-+ .......++|||+++++...+
T Consensus 156 ~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 156 TMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYN 196 (441)
T ss_dssp EEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESC
T ss_pred ceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecC
Confidence 34556888876653 44322 345678899999998877644
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.30 E-value=0.0022 Score=61.56 Aligned_cols=157 Identities=6% Similarity=-0.014 Sum_probs=87.1
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
.++.++++.+++....++.+.++++.. ... ..+... ........+|||||++|+....+ ..|.++
T Consensus 124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~g~~d---------g~i~i~ 189 (287)
T d1pgua2 124 SAVSLSQNYVAVGLEEGNTIQVFKLSD--LEVSFDLKTP---LRAKPSYISISPSETYIAAGDVM---------GKILLY 189 (287)
T ss_dssp EEEEECSSEEEEEETTTSCEEEEETTE--EEEEEECSSC---CSSCEEEEEECTTSSEEEEEETT---------SCEEEE
T ss_pred eeeeccCcceeeeccccceeeeeeccc--cceeeeeeec---cCCceeEEEeccCcccccccccc---------ccccce
Confidence 456667777777666556788888764 322 222221 12346778899999987665443 358889
Q ss_pred EcCCCceEEe--eeCCCeeeeeeeCCCCCeEEEEEecCCCC--CCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccC
Q 004816 227 ALNGQNIQVL--VSGSDFYAFPRMDPRGERMAWIEWHHPNM--PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 302 (729)
Q Consensus 227 dl~~g~~~~l--t~~~~~~~~~~~SPDG~~la~~~~~~~~~--~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 302 (729)
|+.+++.... ..........+|+|+++.......+..-. .-....|+++|+. .+. .......+.. ..+..
T Consensus 190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~-~~~-~~~~~~~~h~----~~V~~ 263 (287)
T d1pgua2 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK-RPM-KIIKALNAHK----DGVNN 263 (287)
T ss_dssp ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS-CTT-CCEEETTSST----TCEEE
T ss_pred eecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC-CCC-eEEEEeCCCC----CCeEE
Confidence 9987764322 12234456678888765322111110000 0012348899987 432 1244445554 56778
Q ss_pred ceeCCCCcEEEEEecCCCceEEEE
Q 004816 303 PKWSSKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 303 ~~wspDG~l~~~~~~~~g~~~l~~ 326 (729)
+.|+||++++ .... .+.-+||.
T Consensus 264 v~~~~~~~l~-s~g~-D~~v~iW~ 285 (287)
T d1pgua2 264 LLWETPSTLV-SSGA-DACIKRWN 285 (287)
T ss_dssp EEEEETTEEE-EEET-TSCEEEEE
T ss_pred EEECCCCEEE-EEEC-CCeEEEEE
Confidence 8999998644 3333 45555653
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.29 E-value=0.0031 Score=64.76 Aligned_cols=131 Identities=13% Similarity=0.164 Sum_probs=77.4
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh---------------hhHHHhhCCcEEEEecCCCCC
Q 004816 469 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---------------SIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 469 G~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---------------~~~~la~~G~~v~~~d~rGs~ 533 (729)
+..+..|++...+ ..++.|+|+++-|||++......-. .-..|.+. .+++.+|.+-+.
T Consensus 27 ~~~lfyw~~~s~~------~~~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~~-anllfiD~PvGt 99 (421)
T d1wpxa1 27 DKHFFFWTFESRN------DPAKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNSN-ATVIFLDQPVNV 99 (421)
T ss_dssp CCEEEEEEECCSS------CTTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGGS-SEEEEECCSTTS
T ss_pred CceEEEEEEEeCC------CCCCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCcccccc-cCEEEEecCCCC
Confidence 5678888886644 1355799999999998654321100 00112222 678999976556
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhC-CCC--CCCcEEEEEcChHHHHHHHHHh----CC---CcceEEEEecc
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKA--DEKRLCITGGSAGGYTTLAALA----FR---DTFKAGASLYG 603 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~--d~~ri~i~G~S~GG~~a~~~~~----~~---~~~~a~v~~~~ 603 (729)
|+...-...... -....+|+..+++...+. +.. ...++.|.|.||||..+-.++. +. -.++++++.+|
T Consensus 100 GfSy~~~~~~~~--~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng 177 (421)
T d1wpxa1 100 GFSYSGSSGVSN--TVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNG 177 (421)
T ss_dssp TTCBCSSCCCCS--HHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESC
T ss_pred CceecCCccccc--hHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCC
Confidence 655421111100 011245565555533333 322 2357999999999988766653 22 25789999999
Q ss_pred ccChh
Q 004816 604 VADLS 608 (729)
Q Consensus 604 ~~d~~ 608 (729)
+.|..
T Consensus 178 ~~dp~ 182 (421)
T d1wpxa1 178 LTDPL 182 (421)
T ss_dssp CCCHH
T ss_pred cccch
Confidence 88753
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.22 E-value=0.0053 Score=60.04 Aligned_cols=185 Identities=12% Similarity=0.150 Sum_probs=106.0
Q ss_pred EEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 151 ~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
..+++. ++....++.+..+++.+ ++........ ........++|+++.++....+ ..|.++++.+
T Consensus 168 ~~~~~~-~~~~~~d~~i~~~d~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d---------~~i~i~d~~~ 232 (355)
T d1nexb2 168 SGHGNI-VVSGSYDNTLIVWDVAQ--MKCLYILSGH---TDRIYSTIYDHERKRCISASMD---------TTIRIWDLEN 232 (355)
T ss_dssp EEETTE-EEEEETTSCEEEEETTT--TEEEEEECCC---SSCEEEEEEETTTTEEEEEETT---------SCEEEEETTT
T ss_pred ccccce-eeeecccceeeeeeccc--ccceeeeecc---ccccccccccccceeeeccccc---------ceEEeeeccc
Confidence 334444 34444567899999886 4433222221 2345667899999987766543 3588899998
Q ss_pred CceEEeeeC-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 231 QNIQVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 231 g~~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
+.......+ ........|+ ++.|+..+ ....|.++|+. ++.. ....... ....-..+++++
T Consensus 233 ~~~~~~~~~h~~~v~~~~~~--~~~l~~~~--------~dg~i~iwd~~-~~~~--~~~~~~~-----~~~~~~~~~~~~ 294 (355)
T d1nexb2 233 GELMYTLQGHTALVGLLRLS--DKFLVSAA--------ADGSIRGWDAN-DYSR--KFSYHHT-----NLSAITTFYVSD 294 (355)
T ss_dssp CCEEEEECCCSSCCCEEEEC--SSEEEEEC--------TTSEEEEEETT-TCCE--EEEEECT-----TCCCCCEEEECS
T ss_pred cccccccccccccccccccc--cceeeeee--------ccccccccccc-ccce--ecccccC-----CceEEEEEcCCC
Confidence 876544333 3334455665 56666544 23458899987 5542 2122211 111233567777
Q ss_pred cEEEEEecCCCceEEEEEEcCCCeEEE-eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 310 ELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 310 ~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
+++....+ + .|.++|+++|+... .... ...+.+ .+.|. ++.++.+...+|...|+.+|.
T Consensus 295 ~~l~~g~d--~--~i~vwd~~tg~~~~~~~~~---~~~~V~-----~v~~~-----~~~~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 295 NILVSGSE--N--QFNIYNLRSGKLVHANILK---DADQIW-----SVNFK-----GKTLVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp SEEEEEET--T--EEEEEETTTCCBCCSCTTT---TCSEEE-----EEEEE-----TTEEEEEEESSSCEEEEEEEC
T ss_pred CEEEEEeC--C--EEEEEECCCCCEEEEEecC---CCCCEE-----EEEEc-----CCeEEEEEECCCcEEEEEEeC
Confidence 76655543 3 57778988886432 1111 112222 23442 346777777899888888774
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.091 Score=50.24 Aligned_cols=150 Identities=11% Similarity=0.104 Sum_probs=73.1
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~ 326 (729)
.+++||+.|+..+. ...|.++|+. .++. +....... ..+. .+++++++++.... .+ .|.+
T Consensus 182 ~~~~~~~~l~s~~~--------dg~i~~~d~~-~~~~--~~~~~~~~----~~v~--~~~~~~~~l~s~s~-d~--~i~i 241 (342)
T d2ovrb2 182 SLQFDGIHVVSGSL--------DTSIRVWDVE-TGNC--IHTLTGHQ----SLTS--GMELKDNILVSGNA-DS--TVKI 241 (342)
T ss_dssp EEEECSSEEEEEET--------TSCEEEEETT-TCCE--EEEECCCC----SCEE--EEEEETTEEEEEET-TS--CEEE
T ss_pred cccCCCCEEEEEeC--------CCeEEEeecc-ccee--eeEecccc----ccee--EEecCCCEEEEEcC-CC--EEEE
Confidence 45566776654442 2347888887 5554 33444433 2333 34455565545444 34 4666
Q ss_pred EEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-EeeccC-----Ccce
Q 004816 327 WIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIP-----FTDI 400 (729)
Q Consensus 327 ~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~~lt~~-----~~~v 400 (729)
+|....+............... ..+.+ +++ ++++...+|.-+|| |+.+++. +.+... ...|
T Consensus 242 wd~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~-~~~s~s~Dg~i~iw--d~~tg~~i~~~~~~~~~~~~~~v 308 (342)
T d2ovrb2 242 WDIKTGQCLQTLQGPNKHQSAV-----TCLQF-----NKN-FVITSSDDGTVKLW--DLKTGEFIRNLVTLESGGSGGVV 308 (342)
T ss_dssp EETTTCCEEEEECSTTSCSSCE-----EEEEE-----CSS-EEEEEETTSEEEEE--ETTTCCEEEEEEECTTGGGTCEE
T ss_pred Eecccccccccccccceeeece-----eeccc-----CCC-eeEEEcCCCEEEEE--ECCCCCEEEEEecccCCCCCCCE
Confidence 6776665544332211111111 11122 344 55566677765555 7777664 344321 2246
Q ss_pred EEe-eeeCCEEEEEEeCCCC-CceEEEEEcC
Q 004816 401 DNI-TLGNDCLFVEGASGVE-PSSVAKVTLD 429 (729)
Q Consensus 401 ~~~-~~~~~~~~~~~~~~~~-~~~ly~~d~~ 429 (729)
..+ ..+++.+++.++...+ ...|+++|++
T Consensus 309 ~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 309 WRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 666 4445555544443322 3447777654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.07 E-value=0.022 Score=53.73 Aligned_cols=192 Identities=12% Similarity=0.072 Sum_probs=94.3
Q ss_pred EEEEEECC-CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 TVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 ~i~~~~~~-~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
.++++... .+++..++..+ .....+.... .......++++||+ | |+.+.. ...+. +...+....
T Consensus 26 ~i~v~~~~~~~~i~~~~~~~--~~~~~~~~~~---~~~p~gvav~~~g~-i-~v~d~~-------~~~i~-~~~~~~~~~ 90 (260)
T d1rwia_ 26 NVYVTSEGMYGRVVKLATGS--TGTTVLPFNG---LYQPQGLAVDGAGT-V-YVTDFN-------NRVVT-LAAGSNNQT 90 (260)
T ss_dssp CEEEEECSSSCEEEEEC------CEEECCCCS---CCSCCCEEECTTCC-E-EEEETT-------TEEEE-ECTTCSCCE
T ss_pred CEEEEEcCCCCEEEEEcCCC--ceEEEeccCC---ccCceEEEEcCCCC-E-EEeeee-------eceee-eeeecccee
Confidence 45554433 35777777654 3222222221 12236678999997 3 454433 13343 443333222
Q ss_pred Eee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 235 VLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 235 ~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
.+. .+.....+.+++++|+ |++... ....+++++.. +.........+. .....++.+++|++++
T Consensus 91 ~~~~~~~~~p~~iavd~~g~-i~v~d~-------~~~~~~~~~~~--~~~~~~~~~~~~-----~~p~~i~~~~~g~~~v 155 (260)
T d1rwia_ 91 VLPFDGLNYPEGLAVDTQGA-VYVADR-------GNNRVVKLAAG--SKTQTVLPFTGL-----NDPDGVAVDNSGNVYV 155 (260)
T ss_dssp ECCCCSCCSEEEEEECTTCC-EEEEEG-------GGTEEEEECTT--CSSCEECCCCSC-----CSCCEEEECTTCCEEE
T ss_pred eeeeeeeeecccccccccce-eEeecc-------ccccccccccc--cceeeeeeeccc-----CCcceeeecCCCCEee
Confidence 222 2233445678999997 555542 23457776654 322111111121 2345677889988654
Q ss_pred EEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
.. . +...|++++.++.....+... ....| ..+.+. .++.||++.. +...|++++.+++..+.+
T Consensus 156 ~~-~--~~~~i~~~d~~~~~~~~~~~~--~~~~p------~gi~~d----~~g~l~vsd~--~~~~i~~~~~~~~~~~~~ 218 (260)
T d1rwia_ 156 TD-T--DNNRVVKLEAESNNQVVLPFT--DITAP------WGIAVD----EAGTVYVTEH--NTNQVVKLLAGSTTSTVL 218 (260)
T ss_dssp EE-G--GGTEEEEECTTTCCEEECCCS--SCCSE------EEEEEC----TTCCEEEEET--TTTEEEEECTTCSCCEEC
T ss_pred ec-c--ccccccccccccceeeeeecc--ccCCC------ccceee----eeeeeeeeec--CCCEEEEEeCCCCeEEEE
Confidence 43 3 345788999877654443311 11111 123332 3345665543 334577888776655544
Q ss_pred c
Q 004816 394 D 394 (729)
Q Consensus 394 t 394 (729)
.
T Consensus 219 ~ 219 (260)
T d1rwia_ 219 P 219 (260)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.96 E-value=0.03 Score=53.75 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=40.4
Q ss_pred CceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 147 ~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
+.++.++++ .++++...++.|.+||++++ .....+....+ ....+...+|+|++..++++...+ ..+.+
T Consensus 14 I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~-~~~~~~~~~~~-h~~~V~~v~f~~~~~~~l~sg~~d--------~~v~~ 83 (342)
T d1yfqa_ 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQ-AKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQ--------GEILK 83 (342)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEEEETT-TTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETT--------SCEEE
T ss_pred EEEEEEeCCCCEEEEEECCCeEEEEEccCC-CcceEEEEecC-CCCCEEEEEEeCCCCCEEEEcccc--------cceee
Confidence 444444422 34455557888999998752 22222211000 023467788999887766665433 23555
Q ss_pred EEcCCCc
Q 004816 226 IALNGQN 232 (729)
Q Consensus 226 ~dl~~g~ 232 (729)
+++..+.
T Consensus 84 w~~~~~~ 90 (342)
T d1yfqa_ 84 VDLIGSP 90 (342)
T ss_dssp ECSSSSS
T ss_pred eeccccc
Confidence 5555443
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=96.83 E-value=0.0052 Score=64.19 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=74.2
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc---------hh------hhHHHhhCCcEEEEecCCCCC
Q 004816 469 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---------NL------SIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 469 G~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~---------~~------~~~~la~~G~~v~~~d~rGs~ 533 (729)
+..+..|++...+.. +....|+||++-|||++...... .. .-..|.+ =.+++.+|.+-+.
T Consensus 48 ~~~~ffw~fe~~~~~----~~~~~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn~-~an~lfIDqPvGv 122 (483)
T d1ac5a_ 48 DLEYFFWKFTNNDSN----GNVDRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWIS-KGDLLFIDQPTGT 122 (483)
T ss_dssp CCEEEEEEEECSCSG----GGSSCCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGGG-TSEEEEECCSTTS
T ss_pred cceEEEEEEEecCCC----CCCCCCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCcccc-cCCEEEEeCCCCc
Confidence 345776777554311 22346999999999986543210 00 0011222 2678999977666
Q ss_pred CCchhHHHh--hccCC-Cccc----HHHHHHHHH-HHHhCCCCCCCcEEEEEcChHHHHHHHHHh----C---------C
Q 004816 534 GYGREFRER--LLGRW-GIVD----VNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA----F---------R 592 (729)
Q Consensus 534 g~g~~~~~~--~~~~~-~~~~----~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~---------~ 592 (729)
|+...-... ..... ...+ ..|+..+++ |+...+..-..++.|.|-||||..+-.++. + .
T Consensus 123 GfSy~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~ 202 (483)
T d1ac5a_ 123 GFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDT 202 (483)
T ss_dssp TTCSSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSC
T ss_pred CeeecCCCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCc
Confidence 655321110 00010 0111 233333333 334444444578999999999988766653 1 1
Q ss_pred CcceEEEEeccccChh
Q 004816 593 DTFKAGASLYGVADLS 608 (729)
Q Consensus 593 ~~~~a~v~~~~~~d~~ 608 (729)
-.++++.+.+|+.|..
T Consensus 203 inLkGi~IGNg~~d~~ 218 (483)
T d1ac5a_ 203 YDLKALLIGNGWIDPN 218 (483)
T ss_dssp CEEEEEEEEEECCCHH
T ss_pred ccceeeeecCCccChh
Confidence 2589999888887653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.73 E-value=0.14 Score=48.36 Aligned_cols=219 Identities=12% Similarity=0.072 Sum_probs=107.8
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCC--CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
.|++.+....+|.+++.++ .-.+.+.... +.......+..+.++...++++.... ...|.+++..+...
T Consensus 35 ~i~VaD~~n~rI~v~d~~G--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~g~~~ 105 (279)
T d1q7fa_ 35 DIIVADTNNHRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-------THQIQIYNQYGQFV 105 (279)
T ss_dssp CEEEEEGGGTEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-------GCEEEEECTTSCEE
T ss_pred CEEEEECCCCEEEEEeCCC--CEEEEecccCCCcccccccccccccccccccceeccCC-------ccccccccccccce
Confidence 5666655566888998874 3333332211 00011223445556655555554432 35688888765444
Q ss_pred EEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEE
Q 004816 234 QVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 234 ~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
+.+.. ......+.+..++|+ +++... ....+++++.+ |+. +..+...... .....++..++|.++
T Consensus 106 ~~~~~~~~~~p~~~avd~~G~-i~v~~~-------~~~~~~~~~~~--g~~--~~~~g~~~~~--~~~~~i~~d~~g~i~ 171 (279)
T d1q7fa_ 106 RKFGATILQHPRGVTVDNKGR-IIVVEC-------KVMRVIIFDQN--GNV--LHKFGCSKHL--EFPNGVVVNDKQEIF 171 (279)
T ss_dssp EEECTTTCSCEEEEEECTTSC-EEEEET-------TTTEEEEECTT--SCE--EEEEECTTTC--SSEEEEEECSSSEEE
T ss_pred eecCCCcccccceeccccCCc-EEEEee-------ccceeeEeccC--Cce--eecccccccc--cccceeeeccceeEE
Confidence 43322 223334567888987 444442 23457777644 554 2222111100 334456677888765
Q ss_pred EEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEe
Q 004816 313 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL 392 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~ 392 (729)
+.... ...|+++|+++.....+- .......| ..+.+.+ ++ .||++. ..+...|.+++.++.-++.
T Consensus 172 v~d~~---~~~V~~~d~~G~~~~~~g-~~g~~~~P------~giavD~---~G-~i~Vad-~~~~~~v~~f~~~G~~~~~ 236 (279)
T d1q7fa_ 172 ISDNR---AHCVKVFNYEGQYLRQIG-GEGITNYP------IGVGINS---NG-EILIAD-NHNNFNLTIFTQDGQLISA 236 (279)
T ss_dssp EEEGG---GTEEEEEETTCCEEEEES-CTTTSCSE------EEEEECT---TC-CEEEEE-CSSSCEEEEECTTSCEEEE
T ss_pred eeecc---ccceeeeecCCceeeeec-ccccccCC------ccccccc---CC-eEEEEE-CCCCcEEEEECCCCCEEEE
Confidence 54433 457888898765544442 11111111 2233431 44 466543 2333457777776554555
Q ss_pred eccCC--cceEEe-eeeCCEEEE
Q 004816 393 LDIPF--TDIDNI-TLGNDCLFV 412 (729)
Q Consensus 393 lt~~~--~~v~~~-~~~~~~~~~ 412 (729)
+..+. .....+ ..+++.+++
T Consensus 237 ~~~~~~~~~p~~vav~~dG~l~V 259 (279)
T d1q7fa_ 237 LESKVKHAQCFDVALMDDGSVVL 259 (279)
T ss_dssp EEESSCCSCEEEEEEETTTEEEE
T ss_pred EeCCCCCCCEeEEEEeCCCcEEE
Confidence 54332 223444 344555443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.01 Score=57.42 Aligned_cols=146 Identities=11% Similarity=0.015 Sum_probs=82.9
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCee-cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.+++...++.|.++++.. ++... +... ..... .++++++.|+....+ ..|+++++...+...
T Consensus 189 ~l~s~~~dg~i~~~d~~~--~~~~~~~~~~----~~~v~--~~~~~~~~l~s~s~d---------~~i~iwd~~~~~~~~ 251 (342)
T d2ovrb2 189 HVVSGSLDTSIRVWDVET--GNCIHTLTGH----QSLTS--GMELKDNILVSGNAD---------STVKIWDIKTGQCLQ 251 (342)
T ss_dssp EEEEEETTSCEEEEETTT--CCEEEEECCC----CSCEE--EEEEETTEEEEEETT---------SCEEEEETTTCCEEE
T ss_pred EEEEEeCCCeEEEeeccc--ceeeeEeccc----cccee--EEecCCCEEEEEcCC---------CEEEEEecccccccc
Confidence 344555778899999987 54332 2322 12222 356677776555443 458899998876654
Q ss_pred eeeCCC--eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 236 LVSGSD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 236 lt~~~~--~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
...... ...-.+++++++.++..+ ....|.++|+. +|+........... .....+..++|+|||.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~s~s--------~Dg~i~iwd~~-tg~~i~~~~~~~~~-~~~~~v~~v~~s~~~~~la 321 (342)
T d2ovrb2 252 TLQGPNKHQSAVTCLQFNKNFVITSS--------DDGTVKLWDLK-TGEFIRNLVTLESG-GSGGVVWRIRASNTKLVCA 321 (342)
T ss_dssp EECSTTSCSSCEEEEEECSSEEEEEE--------TTSEEEEEETT-TCCEEEEEEECTTG-GGTCEEEEEEECSSEEEEE
T ss_pred cccccceeeeceeecccCCCeeEEEc--------CCCEEEEEECC-CCCEEEEEecccCC-CCCCCEEEEEECCCCCEEE
Confidence 433221 122234566777776555 23459999998 77752221111111 0003456789999988555
Q ss_pred EEecCCC--ceEEEEEEcC
Q 004816 314 VTDRKNG--FWNLHKWIES 330 (729)
Q Consensus 314 ~~~~~~g--~~~l~~~d~~ 330 (729)
.... .| ...|+++|.+
T Consensus 322 ~g~~-dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 322 VGSR-NGTEETKLLVLDFD 339 (342)
T ss_dssp EECS-SSSSCCEEEEEECC
T ss_pred EEeC-CCCCeeEEEEEeCC
Confidence 5544 44 3567777764
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.59 E-value=0.0028 Score=63.36 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=26.5
Q ss_pred CCCCCEEEEEcCCCCC-C----ccccchh----hhHHHhhCCcEEEEecCC
Q 004816 489 EEKPPLLVKSHGGPTS-E----ARGILNL----SIQYWTSRGWAFVDVNYG 530 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~-~----~~~~~~~----~~~~la~~G~~v~~~d~r 530 (729)
..++| ||++||..+. . ...+|.- ..+.|.+.|+.|+++...
T Consensus 5 ~~~yP-IVLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~ 54 (388)
T d1ku0a_ 5 ANDAP-IVLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVG 54 (388)
T ss_dssp CCCCC-EEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCC
T ss_pred CCCCC-EEEeCCcccCCccccCcccccCCchhhhHHHHHhCCCEEEEeccC
Confidence 45677 6678995322 1 1123332 567788999999999974
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.00 E-value=0.059 Score=53.40 Aligned_cols=101 Identities=13% Similarity=0.007 Sum_probs=58.7
Q ss_pred EEEEEE-CCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCE--EEEEEeccC---------CCCCCcceEE
Q 004816 156 TVIFSN-YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR--YVTVREDRR---------QDALNSTTEI 223 (729)
Q Consensus 156 ~i~~~~-~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~--l~~~~~~~~---------~~~~~~~~~l 223 (729)
+-+|++ ..+++|.++|+++ .+..++...+.... .-.++.+++++. |+...+..- +.+......+
T Consensus 100 rylFVNDkan~RVAvIdl~~--fkt~kIi~iPn~~~--~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~ 175 (459)
T d1fwxa2 100 RFLFMNDKANTRVARVRCDV--MKCDAILEIPNAKG--IHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 175 (459)
T ss_dssp EEEEEEETTTTEEEEEETTT--TEEEEEEECSSCCS--EEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred eEEEEEcCCCceEEEEECcc--eeeeEEEecCCCCC--CceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence 445554 4567999999998 77666654432211 223345555554 333322110 1223345667
Q ss_pred EEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEec
Q 004816 224 VAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWH 261 (729)
Q Consensus 224 ~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~ 261 (729)
.++|.++.++. ++.- ........+||||+++++++.+
T Consensus 176 t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 176 TAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp EEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESC
T ss_pred EEEecCCceEEEEeee-CCChhccccCCCCCEEEEEecc
Confidence 78999987764 3332 2344567899999998887743
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.85 E-value=0.062 Score=51.34 Aligned_cols=73 Identities=8% Similarity=-0.091 Sum_probs=47.8
Q ss_pred ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEe---eeCCCeeeeeeeCCCCCeEEEEEecCCCC
Q 004816 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNM 265 (729)
Q Consensus 190 ~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~l---t~~~~~~~~~~~SPDG~~la~~~~~~~~~ 265 (729)
...+...+|||||++|+....+ ..|.++|++++.. ..+ ..........+|+|++..++++...+
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~D---------g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d--- 78 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ--- 78 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETT---------SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT---
T ss_pred CCCEEEEEEeCCCCEEEEEECC---------CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc---
Confidence 3457899999999988776554 3577777765432 222 23445567789999877665555322
Q ss_pred CCCCcEEEEEEec
Q 004816 266 PWDKAELWVGYIS 278 (729)
Q Consensus 266 ~~~~~~l~~~d~~ 278 (729)
..+.++++.
T Consensus 79 ----~~v~~w~~~ 87 (342)
T d1yfqa_ 79 ----GEILKVDLI 87 (342)
T ss_dssp ----SCEEEECSS
T ss_pred ----cceeeeecc
Confidence 338888877
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=1.1 Score=40.93 Aligned_cols=228 Identities=11% Similarity=0.013 Sum_probs=111.9
Q ss_pred CCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
++.+++++++ .+++...++.|.+||+.+ ++.. .+... ...+.. +++|++.|+....+ ..+.
T Consensus 17 ~V~c~~~d~~-~l~sgs~Dg~i~vWd~~~--~~~~~~l~~H----~~~V~~--v~~~~~~l~s~s~D---------~~i~ 78 (293)
T d1p22a2 17 GVYCLQYDDQ-KIVSGLRDNTIKIWDKNT--LECKRILTGH----TGSVLC--LQYDERVIITGSSD---------STVR 78 (293)
T ss_dssp CEEEEECCSS-EEEEEESSSCEEEEESSS--CCEEEEECCC----SSCEEE--EECCSSEEEEEETT---------SCEE
T ss_pred CEEEEEEcCC-EEEEEeCCCeEEEEECCC--CcEEEEEecC----CCCEee--eecccceeeccccc---------cccc
Confidence 3445666554 466667788999999987 5543 44433 223433 56688876554433 3588
Q ss_pred EEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe-eeeEEecCCCCCccccccCc
Q 004816 225 AIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~-~~~~~~~~~~~~~~~~~~~~ 303 (729)
++++..+........... ....+.+....++... . ...+.+++.. .... .......... ..+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~-~~~~~~~~~~~~~~~----~~v~~~ 144 (293)
T d1p22a2 79 VWDVNTGEMLNTLIHHCE-AVLHLRFNNGMMVTCS-K-------DRSIAVWDMA-SPTDITLRRVLVGHR----AAVNVV 144 (293)
T ss_dssp EEESSSCCEEEEECCCCS-CEEEEECCTTEEEEEE-T-------TSCEEEEECS-SSSCCEEEEEECCCS----SCEEEE
T ss_pred cccccccccccccccccc-ccccccccccceeecc-c-------ccceeEeecc-ccccccccccccccc----cccccc
Confidence 889888766544433222 2234445556565554 2 2236666766 3321 1222222222 222222
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeecc-CccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEE
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 382 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~ 382 (729)
.+. ....+.... . ..+..+|..+++....... ...+ ..+.+ ++. .+++...+|...||
T Consensus 145 ~~~--~~~~~~~s~-d--~~i~~~d~~~~~~~~~~~~~~~~v---------~~~~~-----~~~-~l~~~~~dg~i~i~- 203 (293)
T d1p22a2 145 DFD--DKYIVSASG-D--RTIKVWNTSTCEFVRTLNGHKRGI---------ACLQY-----RDR-LVVSGSSDNTIRLW- 203 (293)
T ss_dssp EEE--TTEEEEEET-T--SEEEEEETTTCCEEEEEECCSSCE---------EEEEE-----ETT-EEEEEETTSCEEEE-
T ss_pred eec--ccccccccC-C--CceeeecCCCCcEEEEEccccccc---------ccccC-----CCC-eEEEecCCCEEEEE-
Confidence 333 233333322 2 3566678877764433221 1110 01112 333 34555567765555
Q ss_pred EECCCCceEeeccC-CcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 383 LDDFGHSLSLLDIP-FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 383 ~d~~~g~~~~lt~~-~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
++.++........ ...+..+..+.. .++..+.. ..++++|+.++
T Consensus 204 -d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~d---g~i~iwd~~~~ 248 (293)
T d1p22a2 204 -DIECGACLRVLEGHEELVRCIRFDNK-RIVSGAYD---GKIKVWDLVAA 248 (293)
T ss_dssp -ETTTCCEEEEECCCSSCEEEEECCSS-EEEEEETT---SCEEEEEHHHH
T ss_pred -ecccceeeeeecccceeeeeccccce-EEEEEcCC---CEEEEEECCCC
Confidence 6666665443333 333444444444 44444432 35666666543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.12 E-value=0.48 Score=45.95 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=65.9
Q ss_pred eeeecceecCCCCEEEEEEeccCCC----------CCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEe
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQD----------ALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEW 260 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~----------~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~ 260 (729)
...++..+..||++ +++. ++... .......++.+ ++++.+.+..+..+.++.++|||+++|++...
T Consensus 150 ~~pNDv~~~~~g~f-y~Tn-d~~~~~~~~~~~e~~~~~~~g~v~~~--~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t 225 (340)
T d1v04a_ 150 PSVNDIVAVGPEHF-YATN-DHYFIDPYLKSWEMHLGLAWSFVTYY--SPNDVRVVAEGFDFANGINISPDGKYVYIAEL 225 (340)
T ss_dssp SSEEEEEEEETTEE-EEEE-SCSCCSHHHHHHHHHTTCCCEEEEEE--CSSCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred cCccceEEecCCCE-EEec-CccCcChhhhhhhHhhcCCceeEEEE--cCCceEEEcCCCCccceeEECCCCCEEEEEeC
Confidence 34588888889973 4442 22111 00112345544 45677777777778899999999999987774
Q ss_pred cCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC-CCcEEEEEe
Q 004816 261 HHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTD 316 (729)
Q Consensus 261 ~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp-DG~l~~~~~ 316 (729)
. ..+|++++++.++........ ..+ ..+.++.+.+ +|.++....
T Consensus 226 ~-------~~~i~~y~~~~~~~l~~~~~~-~l~----~~pDNi~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 226 L-------AHKIHVYEKHANWTLTPLRVL-SFD----TLVDNISVDPVTGDLWVGCH 270 (340)
T ss_dssp G-------GTEEEEEEECTTSCEEEEEEE-ECS----SEEEEEEECTTTCCEEEEEE
T ss_pred C-------CCeEEEEEeCCCcccceEEEe-cCC----CCCCccEEecCCCEEEEEEC
Confidence 2 356999999844444332222 233 4456777765 444554443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=1.9 Score=38.97 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=43.6
Q ss_pred eecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEE
Q 004816 197 IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG 275 (729)
Q Consensus 197 ~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~ 275 (729)
++++||++|+....+ ..|.++|+.+++......+ .+... ++++|++.|+..+. ...+.++
T Consensus 20 c~~~d~~~l~sgs~D---------g~i~vWd~~~~~~~~~l~~H~~~V~--~v~~~~~~l~s~s~--------D~~i~~~ 80 (293)
T d1p22a2 20 CLQYDDQKIVSGLRD---------NTIKIWDKNTLECKRILTGHTGSVL--CLQYDERVIITGSS--------DSTVRVW 80 (293)
T ss_dssp EEECCSSEEEEEESS---------SCEEEEESSSCCEEEEECCCSSCEE--EEECCSSEEEEEET--------TSCEEEE
T ss_pred EEEEcCCEEEEEeCC---------CeEEEEECCCCcEEEEEecCCCCEe--eeecccceeecccc--------ccccccc
Confidence 478999987666554 3588889998887654443 33333 45568887765552 2348888
Q ss_pred EecCCCCe
Q 004816 276 YISENGDV 283 (729)
Q Consensus 276 d~~~~g~~ 283 (729)
++. .+..
T Consensus 81 ~~~-~~~~ 87 (293)
T d1p22a2 81 DVN-TGEM 87 (293)
T ss_dssp ESS-SCCE
T ss_pred ccc-cccc
Confidence 887 5543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.80 E-value=4.5 Score=41.84 Aligned_cols=86 Identities=10% Similarity=0.017 Sum_probs=43.3
Q ss_pred eeeCCCCCeEEEEEecCCCC---------CCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc----eeCCCCc-E
Q 004816 246 PRMDPRGERMAWIEWHHPNM---------PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP----KWSSKGE-L 311 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~---------~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~----~wspDG~-l 311 (729)
++..|+...+++.. ..+.. ......++.+|++ +|+..+.......+ .|......+ ....+|+ .
T Consensus 240 ~s~D~~~g~~y~~t-g~~~p~~~~~r~g~n~~s~svvAld~~-TG~~~W~~q~~~~D-~Wd~D~~~~~~l~~~~~~g~~~ 316 (571)
T d2ad6a1 240 YAYDPKLNLFYYGS-GNPAPWNETMRPGDNKWTMTIWGRDLD-TGMAKWGYQKTPHD-EWDFAGVNQMVLTDQPVNGKMT 316 (571)
T ss_dssp CEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTTTEEEEEETT-TCCEEEEEESSTTC-SSCCCCCCCCEEEEEEETTEEE
T ss_pred cccchhcCeeeeec-ccccCccccccccccccccceeeeecc-chhheecccccCcc-ccccccccccceeeeeccCccc
Confidence 45567777555443 32211 1113568999998 89876544433333 221111111 1223555 2
Q ss_pred EEEEecCCCceEEEEEEcCCCeEE
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
..+... .....+|.+|.++|+..
T Consensus 317 ~~v~~~-~k~G~l~vlDr~tG~~i 339 (571)
T d2ad6a1 317 PLLSHI-DRNGILYTLNRENGNLI 339 (571)
T ss_dssp EEEEEE-CTTSEEEEEETTTCCEE
T ss_pred cceeec-cccceEEEEecCCCcEe
Confidence 222222 33456888888888754
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=1.1 Score=41.71 Aligned_cols=244 Identities=11% Similarity=-0.062 Sum_probs=113.9
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEe-ccCCCCCCcceEEEEEEcCCCceEEeeeCCC-ee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE-DRRQDALNSTTEIVAIALNGQNIQVLVSGSD-FY 243 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~-~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~-~~ 243 (729)
.++++|+.+ ++-+++++.+ ..|.......-+++ |+..-. ............++++|..+...+.+..... ..
T Consensus 20 ~~~~yd~~t--~~W~~~~~~p---~~R~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~ 93 (288)
T d1zgka1 20 YLEAYNPSN--GTWLRLADLQ---VPRSGLAGCVVGGL-LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRN 93 (288)
T ss_dssp CEEEEETTT--TEEEECCCCS---SCCBSCEEEEETTE-EEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCB
T ss_pred eEEEEECCC--CeEEECCCCC---CccceeEEEEECCE-EEEEeCcccCCCCccccchhhhcccccccccccccccceec
Confidence 688999988 7777776553 12333222333444 433311 1100001123568999998887777654221 11
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecC--CCc
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK--NGF 321 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~--~g~ 321 (729)
..-+..-+|+ |+......... .......++.. +... ......... ...... ..-++++++..... ...
T Consensus 94 ~~~~~~~~~~-i~~~gg~~~~~--~~~~~~~~~~~-~~~~---~~~~~~~~~--r~~~~~-~~~~~~~~~~GG~~~~~~~ 163 (288)
T d1zgka1 94 RIGVGVIDGH-IYAVGGSHGCI--HHNSVERYEPE-RDEW---HLVAPMLTR--RIGVGV-AVLNRLLYAVGGFDGTNRL 163 (288)
T ss_dssp TCEEEEETTE-EEEECCEETTE--ECCCEEEEETT-TTEE---EECCCCSSC--CBSCEE-EEETTEEEEECCBCSSCBC
T ss_pred ceecccccee-eEEecceeccc--ccceeeeeccc-cCcc---ccccccccc--ccccee-eeeeecceEecCccccccc
Confidence 1112223555 44333111111 12335556655 3322 111111100 111111 12234444433221 123
Q ss_pred eEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC---eEEEEEEECCCCceEeeccCCc
Q 004816 322 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g---~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
..++++|+.+++.............. .... .++.++.....++ ...++.++..+.+.+.+.....
T Consensus 164 ~~~~~~d~~~~~~~~~~~~~~~~~~~-------~~~~-----~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 231 (288)
T d1zgka1 164 NSAECYYPERNEWRMITAMNTIRSGA-------GVCV-----LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 231 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-------EEEE-----ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred ceEEEeeccccccccccccccccccc-------cccc-----eeeeEEEecCccccccccceeeeeecceeeecccCccC
Confidence 46888999888777654222111111 1111 2234444332221 2457788998888888764322
Q ss_pred c--eEEeeeeCCEEEEEEeCCCC--CceEEEEEcCCCcceeee
Q 004816 399 D--IDNITLGNDCLFVEGASGVE--PSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 399 ~--v~~~~~~~~~~~~~~~~~~~--~~~ly~~d~~~~~~~~lt 437 (729)
. ...+..-+++++++.+.... ...++.+|+..++.++|.
T Consensus 232 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 274 (288)
T d1zgka1 232 RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT 274 (288)
T ss_dssp CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred cccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECC
Confidence 1 11223346778777653322 234899999998876654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.39 E-value=1.8 Score=43.58 Aligned_cols=41 Identities=7% Similarity=0.148 Sum_probs=26.9
Q ss_pred cCCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCC
Q 004816 78 PLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAK 123 (729)
Q Consensus 78 ~lt~e~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~ 123 (729)
.+++|.+...-..+.++.|.|+++++.++. ..|+ |++.+.+
T Consensus 16 ~f~~~~ia~~L~~P~~la~~pdg~llVter---~~G~--i~~v~~~ 56 (450)
T d1crua_ 16 NFDKKVILSNLNKPHALLWGPDNQIWLTER---ATGK--ILRVNPE 56 (450)
T ss_dssp TSCEEEEECCCSSEEEEEECTTSCEEEEET---TTCE--EEEECTT
T ss_pred CcEEEEEECCCCCceEEEEeCCCeEEEEEe---cCCE--EEEEECC
Confidence 355666665556778999999778888874 2355 4555544
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.02 E-value=5.8 Score=40.81 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=29.7
Q ss_pred EEEEEEECCCCceE-eeccCCcce-EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 378 SYLGILDDFGHSLS-LLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 378 ~~ly~~d~~~g~~~-~lt~~~~~v-~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
..|..+|+.+|++. +...+.... ..++..++ ++|.. +. ...++.+|.++|+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~Tagg-lVF~G-~~--dg~l~A~Da~tGe 490 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN-LVFQG-TA--AGQMHAYSADKGE 490 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTT-EEEEE-CT--TSEEEEEETTTCC
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEECCC-EEEEE-CC--CCcEEEEECCCCc
Confidence 46888899888754 222222111 12233444 55544 32 3579999999997
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=3.3 Score=37.96 Aligned_cols=201 Identities=5% Similarity=-0.116 Sum_probs=92.3
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
..+|++|+.+ ...+.+...+ ..+.......-+|+.+++...... ......+.++..+..............
T Consensus 70 ~~~~~yd~~~--~~w~~~~~~p---~~r~~~~~~~~~~~i~~~gg~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~r~ 140 (288)
T d1zgka1 70 SALDCYNPMT--NQWSPCAPMS---VPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWHLVAPMLTRRI 140 (288)
T ss_dssp CCEEEEETTT--TEEEECCCCS---SCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEEECCCCSSCCB
T ss_pred chhhhccccc--cccccccccc---ceecceeccccceeeEEecceecc----cccceeeeeccccCccccccccccccc
Confidence 3799999987 6666665442 123323233335653332211111 112346667877665444332221111
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec-CC-Cce
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR-KN-GFW 322 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~-~~-g~~ 322 (729)
++........+++...... ......++.+|.. .++.. ...... . ..........+++++..... .. ...
T Consensus 141 ~~~~~~~~~~~~~~GG~~~--~~~~~~~~~~d~~-~~~~~---~~~~~~-~--~~~~~~~~~~~~~i~i~GG~~~~~~~~ 211 (288)
T d1zgka1 141 GVGVAVLNRLLYAVGGFDG--TNRLNSAECYYPE-RNEWR---MITAMN-T--IRSGAGVCVLHNCIYAAGGYDGQDQLN 211 (288)
T ss_dssp SCEEEEETTEEEEECCBCS--SCBCCCEEEEETT-TTEEE---ECCCCS-S--CCBSCEEEEETTEEEEECCBCSSSBCC
T ss_pred cceeeeeeecceEecCccc--ccccceEEEeecc-ccccc---cccccc-c--ccccccccceeeeEEEecCcccccccc
Confidence 1211122234544432221 1234568888877 44432 112111 0 11111222234554443322 11 134
Q ss_pred EEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC---eEEEEEEECCCCceEeecc
Q 004816 323 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 323 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g---~~~ly~~d~~~g~~~~lt~ 395 (729)
.++++|..+.+...+.+... +.. ....... ++ .||+....++ ...++.+|+.+..++++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~p~----~r~---~~~~~~~----~~-~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 275 (288)
T d1zgka1 212 SVERYDVETETWTFVAPMKH----RRS---ALGITVH----QG-RIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR 275 (288)
T ss_dssp CEEEEETTTTEEEECCCCSS----CCB---SCEEEEE----TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred ceeeeeecceeeecccCccC----ccc---ceEEEEE----CC-EEEEEecCCCCeecceEEEEECCCCEEEECCC
Confidence 67888998888887753321 111 1122222 44 4554432222 2458899999988888753
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.85 E-value=0.24 Score=48.94 Aligned_cols=101 Identities=10% Similarity=-0.068 Sum_probs=62.8
Q ss_pred CCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC--CCeeeeeeeCCCCCeEEEEEecCCCCCC----------
Q 004816 200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPW---------- 267 (729)
Q Consensus 200 PdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~--~~~~~~~~~SPDG~~la~~~~~~~~~~~---------- 267 (729)
+||++ +|+.++. +.+|.+||+++-+..++..- ....-+.+.+++++..+.....+...|.
T Consensus 97 yDGry-lFVNDka-------n~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 97 YDGRF-LFMNDKA-------NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEE-EEEEETT-------TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cceeE-EEEEcCC-------CceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 58887 5665554 36899999999888777653 2334456777777776655533321110
Q ss_pred --CCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEe
Q 004816 268 --DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 268 --~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~ 316 (729)
....+.++|.+ +.+..+.....+. +....+++||+.+|.+.
T Consensus 169 ~~y~~~~t~ID~~-tm~V~~QV~V~g~-------ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 169 ANYVNVFTAVDAD-KWEVAWQVLVSGN-------LDNCDADYEGKWAFSTS 211 (459)
T ss_dssp G-EEEEEEEEETT-TTEEEEEEEESSC-------CCCEEECSSSSEEEEEE
T ss_pred hhcceEEEEEecC-CceEEEEeeeCCC-------hhccccCCCCCEEEEEe
Confidence 11345678887 6666544444332 35788999999555443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=91.42 E-value=5.8 Score=37.92 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=72.7
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceee---ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSY---ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~---~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
.++|..+..+.||++|+++ .+.+.+..+. ...+ .++.+.-++.-|++++++..... .-.+|.++...+.
T Consensus 41 SlI~gTdK~~Gl~vYdL~G--~~l~~~~~Gr---~NNVDvr~~~~l~~~~~di~vasnR~~~~~---~l~~~~id~~~~~ 112 (353)
T d1h6la_ 41 SKLITTNKKSGLAVYSLEG--KMLHSYHTGK---LNNVDIRYDFPLNGKKVDIAAASNRSEGKN---TIEIYAIDGKNGT 112 (353)
T ss_dssp CEEEEEETTSCCEEEETTC--CEEEECCSSC---EEEEEEEEEEEETTEEEEEEEEEECCTTTC---EEEEEEEETTTTE
T ss_pred cEEEEEcCcCCEEEEcCCC--cEEEecccCC---cCccccccccccCCcceEEEEEeCCcCcce---eEEEEEecCcccc
Confidence 4666666666799999986 6666655431 1111 11223222233455544321110 1246667766666
Q ss_pred eEEeeeCC-------Ceeeeeee--CCC-CCeEEEEEecCCCCCCCCcEEEEEEecCCCCee--eeEEecCCCCCccccc
Q 004816 233 IQVLVSGS-------DFYAFPRM--DPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDVY--KRVCVAGFDPTIVESP 300 (729)
Q Consensus 233 ~~~lt~~~-------~~~~~~~~--SPD-G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~--~~~~~~~~~~~~~~~~ 300 (729)
.+.++... ....+.|. +|+ |+..+|+. +..+ ....|.+.....+.+. .++.+... ...
T Consensus 113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~-~k~G----~v~q~~l~~~~~g~v~~~lvr~f~~~-----~q~ 182 (353)
T d1h6la_ 113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVT-GKEG----EFEQYELNADKNGYISGKKVRAFKMN-----SQT 182 (353)
T ss_dssp EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEE-CSSS----EEEEEEEEECTTSSEEEEEEEEEECS-----SCE
T ss_pred cccccccccccccccCcceEEEEEecCCCCeEEEEEE-cCCc----eEEEEEEEcCCCCceeeEeeeccCCC-----Ccc
Confidence 66554321 12345666 775 55566776 3332 2334444443234432 22223222 122
Q ss_pred cCceeCCCCcEEEEEecCCCceEEEEEEc
Q 004816 301 TEPKWSSKGELFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 301 ~~~~wspDG~l~~~~~~~~g~~~l~~~d~ 329 (729)
......++.+.+|++.... .+|+++.
T Consensus 183 EGCVvDde~~~LyisEE~~---Giw~~~a 208 (353)
T d1h6la_ 183 EGMAADDEYGSLYIAEEDE---AIWKFSA 208 (353)
T ss_dssp EEEEEETTTTEEEEEETTT---EEEEEES
T ss_pred ceEEEeCCCCcEEEecCcc---ceEEEEe
Confidence 3445555545555665523 4666654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.22 E-value=5.1 Score=38.25 Aligned_cols=172 Identities=10% Similarity=0.015 Sum_probs=85.7
Q ss_pred ecceecCCCCEEEEEEeccCCC---CCCcceEEEEEEcCCCc--eEEee--eCC-C---ee-eee--eeCCCCCeEEEEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQD---ALNSTTEIVAIALNGQN--IQVLV--SGS-D---FY-AFP--RMDPRGERMAWIE 259 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~---~~~~~~~l~~~dl~~g~--~~~lt--~~~-~---~~-~~~--~~SPDG~~la~~~ 259 (729)
.|....|||..++.+....+.. .......|+++|+++.+ .+.+. .+. . +. -+. .-.+||+...|+-
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 4677888886443332111110 01224789999998753 33332 211 1 11 122 2357888655554
Q ss_pred ecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCC--------------CceEEE
Q 004816 260 WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN--------------GFWNLH 325 (729)
Q Consensus 260 ~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~--------------g~~~l~ 325 (729)
++.+. ....+|+.++.+ +.++..+....... . .+...+....||.+|++.+... .+..++
T Consensus 118 -nH~~~-~~~ieif~~~~~-~~~l~~~~~v~~~~-~--~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~ 191 (340)
T d1v04a_ 118 -NHPGS-SSTVEVFKFQEE-EKSLLHLKTIRHKL-L--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 191 (340)
T ss_dssp -ECSTT-CCEEEEEEEETT-TTEEEEEEEECCTT-C--SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred -eccCC-CceeEEEEEeCC-CCeEEEEeecCCcc-c--cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence 33221 123345555544 34455555554432 1 4556778888888777743211 123455
Q ss_pred EEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 326 KWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 326 ~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
.+| +++.+.+.+.- .+ .+.+.+.+ +++.||+.....+.-..|.++.
T Consensus 192 ~~~--~~~~~~~~~~l------~~---pNGI~~s~---d~~~lyVa~t~~~~i~~y~~~~ 237 (340)
T d1v04a_ 192 YYS--PNDVRVVAEGF------DF---ANGINISP---DGKYVYIAELLAHKIHVYEKHA 237 (340)
T ss_dssp EEC--SSCEEEEEEEE------SS---EEEEEECT---TSSEEEEEEGGGTEEEEEEECT
T ss_pred EEc--CCceEEEcCCC------Cc---cceeEECC---CCCEEEEEeCCCCeEEEEEeCC
Confidence 555 45555544221 11 12333432 6778888776666666666653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=85.72 E-value=21 Score=36.39 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=31.9
Q ss_pred eEEEEEEcCCCceEEeeeC------CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeE
Q 004816 221 TEIVAIALNGQNIQVLVSG------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 287 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~------~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~ 287 (729)
.+|+.+|.++|+..--..- ......|... +++ |+ +....... -....|+.+|+. +|+..+..
T Consensus 125 g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~-vi-vg~~~~~~-~~~G~v~a~D~~-TG~~~W~~ 192 (571)
T d2ad6a1 125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDT-VL-MGCSGAEL-GVRGAVNAFDLK-TGELKWRA 192 (571)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTE-EE-EECBCGGG-TCCCEEEEEETT-TCCEEEEE
T ss_pred CcEEeeehhhhhhhccccccccccccceeecCeEe-CCe-EE-Eeeccccc-cccCcEEEEECC-CCcEEEEE
Confidence 5799999999986422211 1112223332 333 43 33221110 023468899988 78865543
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=85.41 E-value=0.65 Score=42.97 Aligned_cols=51 Identities=16% Similarity=-0.016 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh----CCCcceEEEEeccc
Q 004816 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGV 604 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~~ 604 (729)
.+++...++.++++. ...+|.+.|||+||.+|..++. ..+.++......|-
T Consensus 108 ~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~l~~~~~~~~~~tFG~Pr 162 (261)
T d1uwca_ 108 QDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPR 162 (261)
T ss_dssp HHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHHHHTTCSSEEEEEESCCC
T ss_pred HHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHHHHhcCCCcceEEecCcc
Confidence 355666677666653 2468999999999999977764 33455554444443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=84.86 E-value=12 Score=35.60 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=46.8
Q ss_pred eEEEEEEcCCCceEEeeeCCCe----eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-CCCeeeeEEecCCCCC
Q 004816 221 TEIVAIALNGQNIQVLVSGSDF----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPT 295 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~~~----~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-~g~~~~~~~~~~~~~~ 295 (729)
..||++|+++.+...+..+.-. ..+....-++.-|++.+....+ ...|+++.++. .+.+ ..+......
T Consensus 50 ~Gl~vYdL~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~----~~~l~~~~id~~~~~l---~~~~~~~~p 122 (353)
T d1h6la_ 50 SGLAVYSLEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEG----KNTIEIYAIDGKNGTL---QSITDPNRP 122 (353)
T ss_dssp SCCEEEETTCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTT----TCEEEEEEEETTTTEE---EECSCSSSC
T ss_pred CCEEEEcCCCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCc----ceeEEEEEecCccccc---ccccccccc
Confidence 3599999986666655433211 1122233333345666633222 23465555542 2322 111111000
Q ss_pred c---cccccCcee--CCC-Cc-EEEEEecCCCceEEEEEEcC
Q 004816 296 I---VESPTEPKW--SSK-GE-LFFVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 296 ~---~~~~~~~~w--spD-G~-l~~~~~~~~g~~~l~~~d~~ 330 (729)
. ...+..++. +++ |. .+|+... .|....|.+...
T Consensus 123 ~~~~~~~vYGlc~y~~~~~g~~~afv~~k-~G~v~q~~l~~~ 163 (353)
T d1h6la_ 123 IASAIDEVYGFSLYHSQKTGKYYAMVTGK-EGEFEQYELNAD 163 (353)
T ss_dssp EECSSSSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEEEC
T ss_pred cccccCcceEEEEEecCCCCeEEEEEEcC-CceEEEEEEEcC
Confidence 0 012345555 554 55 4566665 676666766543
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=83.36 E-value=0.92 Score=42.12 Aligned_cols=37 Identities=24% Similarity=0.156 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
.+++...++.++++. ...+|.+.|||+||.+|..++.
T Consensus 121 ~~~v~~~v~~~~~~~--~~~~i~vtGHSLGGalA~l~a~ 157 (269)
T d1tiba_ 121 ADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGA 157 (269)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcceeeeccchHHHHHHHHHH
Confidence 355666666665553 2369999999999999987775
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=83.32 E-value=0.55 Score=43.62 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
..++...++.++++. ...+|.+.|||+||.+|..++.
T Consensus 116 ~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~ 152 (265)
T d1lgya_ 116 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGM 152 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHHH
Confidence 455666666655542 2469999999999999977763
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=81.33 E-value=0.65 Score=43.23 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
..++...++.+.++. ...+|.+.|||+||.+|..++.
T Consensus 120 ~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~ 156 (271)
T d1tiaa_ 120 RDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAAT 156 (271)
T ss_pred HHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHH
Confidence 345666666665553 2468999999999999977764
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=81.11 E-value=0.74 Score=42.69 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
..++...++.++++. ...+|.+.|||+||.+|..++.
T Consensus 115 ~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~ 151 (265)
T d3tgla_ 115 QNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCAL 151 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHH
Confidence 345556665555542 2479999999999999977653
|