Citrus Sinensis ID: 004817

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------73

MSDFPFCRINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH

ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccEEEEEcccccccccEEccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccEEEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccEEccccccccEEEccccccHHHHHHHHHcccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHcccccccccccHHHHHcccccccccccccEEcccccHHHHHHHHHHHcccEEEEEccccccccccEEEEEEHHHcHHHHHHHHccccccccccccc

ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHcccccccHccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccHHEEEEcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHcccccccccHHHccccccccccccccccccccccccHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccEEEEEEEEcccccEEEEEcccEHHHHHHHHHccccccccEEcccccccccccccccEEEEHHHHHHHHHHHHHccccccccccccHHHHHHcccccccccccccccccccHcHccccEcccccccccccEEcccccHHHHHHHHHHHcccEEEEEccccccccccEEEEEEHHHHHHHHHHHHccccccccccccc

msdfpfcrinendlfkhdwrsrsKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVcfaptaagpgipeikaylngvdtpnmfgATTLIVKIIGSIGAVAagldlgkegplvhIGSCIAsllgqggpdnhrIKWQWLRYFnndrdrrdlitcgsssgvcaafrapvggvLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICtsgkcglfgtgglimfdvsnvpvryhvmdIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYclpfladckacdpsfpetcptngrsgnfkqfncpnghyndLATLLLttnddavrnifssntptefqpssiLIFFILYCILGLITFGiavpsglfLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKtvgdsfnpSIYEIILElkglpfldahpepwmrtltvgelidakppvitlsgieKVSQIVDVLRntthngfpvldegvvppsglaNVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYidlhpltnttpytVIESMSVAKAMVLFRQVGLRHLlvvpkyeaagvspvvgiltrqdlrafniltafphlersksgqkh

msdfpfcrinendlfkhdwrsrSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSsntptefqpsSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWflqekrrteewevrekfswvelaeregkieeVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVpkyeaagvspVVGILTRQDLRAFNILtafphlersksgqkh

MSDFPFCRINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNflltlvaavlcvcfaPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTligiiggilgglYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYndlatlllttnddaVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFleltnnllllpitmivlliAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH

****PFCRINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH**********

*SDFPFCRINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSG**NV*TELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL***************

**DFPFCRINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHL*********

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		729	2.2.26 [Sep-21-2011]
P92942		780	Chloride channel protein	yes	no	0.990	0.925	0.831	0.0
P92941		775	Chloride channel protein	no	no	0.979	0.921	0.830	0.0
P60300		765	Putative chloride channel	no	no	0.968	0.922	0.552	0.0
Q96282		779	Chloride channel protein	no	no	0.964	0.902	0.543	0.0
P92943		792	Chloride channel protein	no	no	0.938	0.863	0.462	1e-156
Q86AZ6		815	Chloride channel protein	yes	no	0.951	0.851	0.334	1e-100
P51799		803	H(+)/Cl(-) exchange trans	yes	no	0.920	0.835	0.342	1e-99
O70496		803	H(+)/Cl(-) exchange trans	yes	no	0.920	0.835	0.341	3e-99
Q54AX6		863	Chloride channel protein	no	no	0.943	0.797	0.320	1e-93
Q75JF3		757	Chloride channel protein	no	no	0.932	0.898	0.314	4e-93

>sp\|P92942\|CLCB_ARATH Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1	Back alignment and function desciption

 Score = 1226 bits (3173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/722 (83%), Positives = 654/722 (90%)

Query: 8   RINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAV 67
            INENDLFKHDWR RSK QVLQY+FLKW+LACLVGL TGLIATLINLAVENIAGYKLLAV
Sbjct: 59  EINENDLFKHDWRKRSKAQVLQYVFLKWTLACLVGLFTGLIATLINLAVENIAGYKLLAV 118

Query: 68  VSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFG 127
             F+ ++RY+ G +   G N  LTLVA+VLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFG
Sbjct: 119 GHFLTQERYVTGLMVLVGANLGLTLVASVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFG 178

Query: 128 ATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDR 187
           ATT+IVKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGG DNHRIKW+WLRYFNNDR
Sbjct: 179 ATTMIVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGTDNHRIKWRWLRYFNNDR 238

Query: 188 DRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIE 247
           DRRDLITCGS++GVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLR FIE
Sbjct: 239 DRRDLITCGSAAGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLREFIE 298

Query: 248 ICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLY 307
           IC SGKCGLFG GGLIMFDVS+V   YHV DIIPV LIG+IGGILG LYNH+LHKVLRLY
Sbjct: 299 ICNSGKCGLFGKGGLIMFDVSHVTYTYHVTDIIPVMLIGVIGGILGSLYNHLLHKVLRLY 358

Query: 308 NLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNC 367
           NLIN+KGK+HK+LL+L+VS+FTSVC Y LPFLA CK CDPS  E CPTNGRSGNFKQF+C
Sbjct: 359 NLINEKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPCDPSIDEICPTNGRSGNFKQFHC 418

Query: 368 PNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 427
           P G+YNDLATLLLTTNDDAVRN+FSSNTP EF   S+ IFF+LYCILGL TFGIA PSGL
Sbjct: 419 PKGYYNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATPSGL 478

Query: 428 FLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNL 487
           FLPIILMG+AYGR+LG AMGSYT+IDQGLYAVLGAA+LMAGSMRMTVSLCVIFLELTNNL
Sbjct: 479 FLPIILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFLELTNNL 538

Query: 488 LLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPV 547
           LLLPITMIVLLIAKTVGDSFNPSIY+IIL LKGLPFL+A+PEPWMR LTVGEL DAKPPV
Sbjct: 539 LLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLTVGELGDAKPPV 598

Query: 548 ITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 607
           +TL G+EKVS IVDVL+NTTHN FPVLDE  VP  GLA  ATELHGLILRAHLV  LKK+
Sbjct: 599 VTLQGVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLATGATELHGLILRAHLVKVLKKR 658

Query: 608 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIES 667
           WFL EKRRTEEWEVREKF W ELAERE   ++VA+TS EMEMY+DLHPLTNTTPYTV+E+
Sbjct: 659 WFLTEKRRTEEWEVREKFPWDELAEREDNFDDVAITSAEMEMYVDLHPLTNTTPYTVMEN 718

Query: 668 MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQ 727
           MSVAKA+VLFRQVGLRHLL+VPK +A+G+ PVVGILTRQDLRA+NIL AFP LE+SK G+
Sbjct: 719 MSVAKALVLFRQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPLLEKSKGGK 778

Query: 728 KH 729
            H
Sbjct: 779 TH 780

Voltage-gated chloride channel.
Arabidopsis thaliana (taxid: 3702)

>sp\|P92941\|CLCA_ARATH Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2	Back alignment and function description

>sp\|P60300\|CLCG_ARATH Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=2 SV=2	Back alignment and function description

>sp\|Q96282\|CLCC_ARATH Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1	Back alignment and function description

>sp\|P92943\|CLCD_ARATH Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2	Back alignment and function description

>sp\|Q86AZ6\|CLCB_DICDI Chloride channel protein B OS=Dictyostelium discoideum GN=clcB PE=3 SV=1	Back alignment and function description

>sp\|P51799\|CLCN7_RAT H(+)/Cl(-) exchange transporter 7 OS=Rattus norvegicus GN=Clcn7 PE=2 SV=1	Back alignment and function description

>sp\|O70496\|CLCN7_MOUSE H(+)/Cl(-) exchange transporter 7 OS=Mus musculus GN=Clcn7 PE=1 SV=1	Back alignment and function description

>sp\|Q54AX6\|CLCA_DICDI Chloride channel protein A OS=Dictyostelium discoideum GN=clcA PE=2 SV=1	Back alignment and function description

>sp\|Q75JF3\|CLCC_DICDI Chloride channel protein C OS=Dictyostelium discoideum GN=clcC PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		729
359488503		789	PREDICTED: chloride channel protein CLC-	0.989	0.913	0.857	0.0
351722961		783	chloride channel [Glycine max] gi\|662201	0.983	0.915	0.838	0.0
255536929		787	chloride channel clc, putative [Ricinus	0.990	0.917	0.865	0.0
301318134		789	chloride channel ClC4 [Vitis vinifera]	0.989	0.913	0.855	0.0
356571521		790	PREDICTED: chloride channel protein CLC-	0.990	0.913	0.857	0.0
224060241		785	Cl-channel clc-7 [Populus trichocarpa] g	0.989	0.918	0.855	0.0
15232105		780	chloride channel protein CLC-b [Arabidop	0.990	0.925	0.831	0.0
297814954		779	CLC-B [Arabidopsis lyrata subsp. lyrata]	0.990	0.926	0.828	0.0
449441686		789	PREDICTED: chloride channel protein CLC-	0.990	0.915	0.827	0.0
15237514		775	chloride channel protein CLC-a [Arabidop	0.979	0.921	0.830	0.0

>gi\|359488503\|ref\|XP_002273594.2\| PREDICTED: chloride channel protein CLC-b [Vitis vinifera] gi\|296082356\|emb\|CBI21361.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1251 bits (3236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/721 (85%), Positives = 666/721 (92%)

Query: 8   RINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAV 67
            INENDLFKHDWRSRS  QVLQYIFLKWSLA LVGLLTGLIATLINLAVENIAGYKLLAV
Sbjct: 67  EINENDLFKHDWRSRSSAQVLQYIFLKWSLAFLVGLLTGLIATLINLAVENIAGYKLLAV 126

Query: 68  VSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFG 127
              +EK RYL GF+Y T  NF+LTL AA LCVCFAPTAAGPGIPEIKAYLNGVDTPNMFG
Sbjct: 127 SGLVEKKRYLTGFIYLTTANFVLTLFAAFLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFG 186

Query: 128 ATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDR 187
           A+TLIVKI GSIGAV+AGLDLGKEGPLVHIGSCIASLLGQGGP+N+RIKW+WLRYFNNDR
Sbjct: 187 ASTLIVKIFGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPENYRIKWRWLRYFNNDR 246

Query: 188 DRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIE 247
           DRRDLITCG+SSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVV VVLRAFIE
Sbjct: 247 DRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVAVVLRAFIE 306

Query: 248 ICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLY 307
            C SGKCGLFG GGLIMFDVS+V V YH MDI PV LIG+IGG+LG LYNH+LHKVLR+Y
Sbjct: 307 YCNSGKCGLFGRGGLIMFDVSDVTVTYHAMDIAPVALIGLIGGVLGSLYNHLLHKVLRVY 366

Query: 308 NLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNC 367
           NLINQKGK+HKLLL+LSVS+FTS+C YCLPFLA C  CD S  ETCPTNGR+GNFKQFNC
Sbjct: 367 NLINQKGKIHKLLLSLSVSLFTSICLYCLPFLATCSPCDSSITETCPTNGRTGNFKQFNC 426

Query: 368 PNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 427
           P+G+YNDLA+LL TTNDDAVRNIFS+NT TEF P S+LIFF LY ILGLITFGIAVPSGL
Sbjct: 427 PDGYYNDLASLLFTTNDDAVRNIFSTNTATEFHPLSLLIFFGLYYILGLITFGIAVPSGL 486

Query: 428 FLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNL 487
           FLPIILMGSAYGRLLG+AMGSYT IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNL
Sbjct: 487 FLPIILMGSAYGRLLGIAMGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNL 546

Query: 488 LLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPV 547
           LLLPITMIVLLIAK+VGD  NPSIY+IIL LKGLPFLDA+PEPWMR LTVGEL DAKPPV
Sbjct: 547 LLLPITMIVLLIAKSVGDCINPSIYDIILHLKGLPFLDANPEPWMRNLTVGELADAKPPV 606

Query: 548 ITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 607
           +TL G+EKV++IVDVLRNTTHNGFPV+DEGVVP  GLA  ATELHG++LRAHLV  LKKK
Sbjct: 607 VTLRGVEKVARIVDVLRNTTHNGFPVVDEGVVPRVGLAIGATELHGIVLRAHLVKVLKKK 666

Query: 608 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIES 667
           WFLQE+RRTEEWEVREKF+W+ELAEREGK EEVAVT++EMEMY+DLHPLTNTTPYTV+ES
Sbjct: 667 WFLQERRRTEEWEVREKFTWIELAEREGKFEEVAVTNDEMEMYVDLHPLTNTTPYTVVES 726

Query: 668 MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQ 727
           MSVAKAMVLFRQVGLRH+L+VPKY+AAGVSPVVGILTRQDLRA+NILTAFPHL +SK  +
Sbjct: 727 MSVAKAMVLFRQVGLRHMLIVPKYQAAGVSPVVGILTRQDLRAYNILTAFPHLAKSKERE 786

Query: 728 K 728
           K
Sbjct: 787 K 787

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|351722961\|ref\|NP_001236494.1\| chloride channel [Glycine max] gi\|66220164\|gb\|AAY43007.1\| chloride channel [Glycine max]	Back alignment and taxonomy information

>gi\|255536929\|ref\|XP_002509531.1\| chloride channel clc, putative [Ricinus communis] gi\|223549430\|gb\|EEF50918.1\| chloride channel clc, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|301318134\|gb\|ADK66982.1\| chloride channel ClC4 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356571521\|ref\|XP_003553925.1\| PREDICTED: chloride channel protein CLC-b-like [Glycine max]	Back alignment and taxonomy information

>gi\|224060241\|ref\|XP_002300101.1\| Cl-channel clc-7 [Populus trichocarpa] gi\|222847359\|gb\|EEE84906.1\| Cl-channel clc-7 [Populus trichocarpa]	Back alignment and taxonomy information

>gi|15232105|ref|NP_189353.1| chloride channel protein CLC-b [Arabidopsis thaliana] gi|41688457|sp|P92942.1|CLCB_ARATH RecName: Full=Chloride channel protein CLC-b; Short=AtCLC-b; AltName: Full=CBS domain-containing protein CBSCLC7 gi|1742955|emb|CAA96058.1| CLC-b chloride channel protein [Arabidopsis thaliana] gi|9294082|dbj|BAB01934.1| CLC-d chloride channel; anion channel protein [Arabidopsis thaliana] gi|17064884|gb|AAL32596.1| CLC-d chloride channel; anion channel protein [Arabidopsis thaliana] gi|332643754|gb|AEE77275.1| chloride channel protein CLC-b [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297814954\|ref\|XP_002875360.1\| CLC-B [Arabidopsis lyrata subsp. lyrata] gi\|297321198\|gb\|EFH51619.1\| CLC-B [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449441686\|ref\|XP_004138613.1\| PREDICTED: chloride channel protein CLC-b-like [Cucumis sativus] gi\|449523299\|ref\|XP_004168661.1\| PREDICTED: chloride channel protein CLC-b-like [Cucumis sativus] gi\|386649465\|gb\|AFJ15538.1\| chloride channel a [Cucumis sativus]	Back alignment and taxonomy information

>gi|15237514|ref|NP_198905.1| chloride channel protein CLC-a [Arabidopsis thaliana] gi|41688456|sp|P92941.2|CLCA_ARATH RecName: Full=Chloride channel protein CLC-a; Short=AtCLC-a; AltName: Full=CBS domain-containing protein CBSCLC5 gi|2935344|gb|AAC05742.1| anion channel protein [Arabidopsis thaliana] gi|10177968|dbj|BAB11351.1| anion channel protein [Arabidopsis thaliana] gi|23297775|gb|AAN13022.1| anion channel protein [Arabidopsis thaliana] gi|332007229|gb|AED94612.1| chloride channel protein CLC-a [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		729
TAIR\|locus:2095123		780	CLC-B "chloride channel B" [Ar	0.989	0.924	0.755	3.5e-297
TAIR\|locus:2164466		775	CLC-A "chloride channel A" [Ar	0.978	0.92	0.763	1.9e-296
TAIR\|locus:2158809		779	CLC-C "chloride channel C" [Ar	0.965	0.903	0.491	4.9e-188
TAIR\|locus:2179724		792	CLC-D "chloride channel D" [Ar	0.938	0.863	0.415	4.4e-139
ZFIN\|ZDB-GENE-061103-196		795	clcn7 "chloride channel 7" [Da	0.932	0.855	0.335	6.8e-95
DICTYBASE\|DDB_G0276865		815	clcB "CLC 6/7 family protein"	0.773	0.692	0.323	1e-90
UNIPROTKB\|F1NS73		802	CLCN7 "Uncharacterized protein	0.928	0.844	0.315	4.7e-87
UNIPROTKB\|F1RG09		809	LOC100626534 "Uncharacterized	0.897	0.808	0.317	2.4e-85
UNIPROTKB\|E2R0Q0		747	CLCN7 "Uncharacterized protein	0.898	0.876	0.315	2.4e-85
RGD\|61836		803	Clcn7 "chloride channel, volta	0.905	0.821	0.317	4.9e-85

TAIR\|locus:2095123 CLC-B "chloride channel B" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2853 (1009.4 bits), Expect = 3.5e-297, P = 3.5e-297
 Identities = 545/721 (75%), Positives = 597/721 (82%)

Query:     9 INENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVV 68
             INENDLFKHDWR RSK QVLQY+FLKW+LACLVGL TGLIATLINLAVENIAGYKLLAV 
Sbjct:    60 INENDLFKHDWRKRSKAQVLQYVFLKWTLACLVGLFTGLIATLINLAVENIAGYKLLAVG 119

Query:    69 SFIEKDRYLQGFLYFTGVNXXXXXXXXXXXXXXXPTAAGPGIPEIKAYLNGVDTPNMFGA 128
              F+ ++RY+ G +   G N               PTAAGPGIPEIKAYLNGVDTPNMFGA
Sbjct:   120 HFLTQERYVTGLMVLVGANLGLTLVASVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGA 179

Query:   129 TTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRD 188
             TT+IVKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGG DNHRIKW+WLRYFNNDRD
Sbjct:   180 TTMIVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGTDNHRIKWRWLRYFNNDRD 239

Query:   189 RRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEI 248
             RRDLITCGS++GVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLR FIEI
Sbjct:   240 RRDLITCGSAAGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLREFIEI 299

Query:   249 CTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKVLRLYN 308
             C SGKCGLFG GGLIMFDVS+V   YHV DIIPV             YNH+LHKVLRLYN
Sbjct:   300 CNSGKCGLFGKGGLIMFDVSHVTYTYHVTDIIPVMLIGVIGGILGSLYNHLLHKVLRLYN 359

Query:   309 LINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCP 368
             LIN+KGK+HK+LL+L+VS+FTSVC Y LPFLA CK CDPS  E CPTNGRSGNFKQF+CP
Sbjct:   360 LINEKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPCDPSIDEICPTNGRSGNFKQFHCP 419

Query:   369 NGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLF 428
              G+Y              VRN+FSSNTP EF   S+ IFF+LYCILGL TFGIA PSGLF
Sbjct:   420 KGYYNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATPSGLF 479

Query:   429 LPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFXXXXXXXX 488
             LPIILMG+AYGR+LG AMGSYT+IDQGLYAVLGAA+LMAGSMRMTVSLCVIF        
Sbjct:   480 LPIILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFLELTNNLL 539

Query:   489 XXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVI 548
                        AKTVGDSFNPSIY+IIL LKGLPFL+A+PEPWMR LTVGEL DAKPPV+
Sbjct:   540 LLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLTVGELGDAKPPVV 599

Query:   549 TLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW 608
             TL G+EKVS IVDVL+NTTHN FPVLDE  VP  GLA  ATELHGLILRAHLV  LKK+W
Sbjct:   600 TLQGVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLATGATELHGLILRAHLVKVLKKRW 659

Query:   609 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESM 668
             FL EKRRTEEWEVREKF W ELAERE   ++VA+TS EMEMY+DLHPLTNTTPYTV+E+M
Sbjct:   660 FLTEKRRTEEWEVREKFPWDELAEREDNFDDVAITSAEMEMYVDLHPLTNTTPYTVMENM 719

Query:   669 SVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQK 728
             SVAKA+VLFRQVGLRHLL+VPK +A+G+ PVVGILTRQDLRA+NIL AFP LE+SK G+ 
Sbjct:   720 SVAKALVLFRQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPLLEKSKGGKT 779

Query:   729 H 729
             H
Sbjct:   780 H 780

GO:0005216 "ion channel activity" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA;ISS

GO:0005253 "anion channel activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006821 "chloride transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009671 "nitrate:hydrogen symporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005622 "intracellular" evidence=TAS

TAIR\|locus:2164466 CLC-A "chloride channel A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158809 CLC-C "chloride channel C" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2179724 CLC-D "chloride channel D" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-061103-196 clcn7 "chloride channel 7" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0276865 clcB "CLC 6/7 family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NS73 CLCN7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RG09 LOC100626534 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R0Q0 CLCN7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|61836 Clcn7 "chloride channel, voltage-sensitive 7" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O70496	CLCN7_MOUSE	No assigned EC number	0.3411	0.9204	0.8356	yes	no
P92941	CLCA_ARATH	No assigned EC number	0.8305	0.9794	0.9212	no	no
P92942	CLCB_ARATH	No assigned EC number	0.8310	0.9903	0.9256	yes	no
P51798	CLCN7_HUMAN	No assigned EC number	0.3324	0.9231	0.8360	yes	no
P51799	CLCN7_RAT	No assigned EC number	0.3425	0.9204	0.8356	yes	no
Q86AZ6	CLCB_DICDI	No assigned EC number	0.3346	0.9519	0.8515	yes	no
Q4PKH3	CLCN7_BOVIN	No assigned EC number	0.3356	0.9245	0.8331	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		729
cd03685		466	cd03685, ClC_6_like, ClC-6-like chloride channel p	0.0
cd03684		445	cd03684, ClC_3_like, ClC-3-like chloride channel p	1e-86
cd01036		416	cd01036, ClC_euk, Chloride channel, ClC	2e-77
pfam00654		345	pfam00654, Voltage_CLC, Voltage gated chloride cha	4e-66
cd03685		466	cd03685, ClC_6_like, ClC-6-like chloride channel p	2e-62
cd01031		402	cd01031, EriC, ClC chloride channel EriC	3e-45
cd00400		383	cd00400, Voltage_gated_ClC, CLC voltage-gated chlo	2e-41
COG0038		443	COG0038, EriC, Chloride channel protein EriC [Inor	8e-41
cd03683		426	cd03683, ClC_1_like, ClC-1-like chloride channel p	1e-37
PRK05277		438	PRK05277, PRK05277, chloride channel protein; Prov	5e-34
cd01036		416	cd01036, ClC_euk, Chloride channel, ClC	3e-30
cd03683		426	cd03683, ClC_1_like, ClC-1-like chloride channel p	5e-22
cd04591		105	cd04591, CBS_pair_EriC_assoc_euk_bac, This cd cont	3e-19
cd01034		390	cd01034, EriC_like, ClC chloride channel family	1e-18
cd01033		388	cd01033, ClC_like, Putative ClC chloride channel	7e-09
PRK01862		574	PRK01862, PRK01862, putative voltage-gated ClC-typ	4e-06
PRK01610		418	PRK01610, PRK01610, putative voltage-gated ClC-typ	2e-05
cd02205		113	cd02205, CBS_pair, The CBS domain, named after hum	7e-05
cd03682		378	cd03682, ClC_sycA_like, ClC sycA-like chloride cha	7e-04
PRK01862		574	PRK01862, PRK01862, putative voltage-gated ClC-typ	0.001
cd04610		107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	0.002
cd01034		390	cd01034, EriC_like, ClC chloride channel family	0.004
pfam00571		57	pfam00571, CBS, CBS domain	0.004

>gnl\|CDD\|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins	Back alignment and domain information

 Score =  528 bits (1362), Expect = 0.0
 Identities = 187/331 (56%), Positives = 238/331 (71%)

Query: 9   INENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVV 68
           + ENDLF+ +WR R K QVLQY FLKW +  L+G+ TGL+A  I+LAVEN+AG K L V 
Sbjct: 7   VIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVK 66

Query: 69  SFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGA 128
           ++IEK R    FL + G+N +L LVAA+L    APTAAG GIPE+K YLNGV  P++   
Sbjct: 67  NYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRL 126

Query: 129 TTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRD 188
            TL+VKI+G I +V+ GL LGKEGP++HIG+CIA+ L QGG  + R+ ++W RYF NDRD
Sbjct: 127 KTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRD 186

Query: 189 RRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEI 248
           +RD +TCG+++GV AAF APVGGVLFSLEEVA++W  AL WRTFFS+ +V   L  F+  
Sbjct: 187 KRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNFFLSG 246

Query: 249 CTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYN 308
           C SGKCGLFG GGLIMFD S+    Y   ++IP  LIG+IGG+LG L+NH+ HKV R   
Sbjct: 247 CNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRK 306

Query: 309 LINQKGKMHKLLLALSVSVFTSVCQYCLPFL 339
            IN KGK+ K+L AL VS+ TSV  +    L
Sbjct: 307 RINHKGKLLKVLEALLVSLVTSVVAFPQTLL 337

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. Length = 466

>gnl\|CDD\|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|238507 cd01036, ClC_euk, Chloride channel, ClC	Back alignment and domain information

>gnl\|CDD\|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel	Back alignment and domain information

>gnl\|CDD\|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|238504 cd01031, EriC, ClC chloride channel EriC	Back alignment and domain information

>gnl\|CDD\|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	Back alignment and domain information

>gnl\|CDD\|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|235385 PRK05277, PRK05277, chloride channel protein; Provisional	Back alignment and domain information

>gnl\|CDD\|238507 cd01036, ClC_euk, Chloride channel, ClC	Back alignment and domain information

>gnl\|CDD\|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|239964 cd04591, CBS_pair_EriC_assoc_euk_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria	Back alignment and domain information

>gnl\|CDD\|238506 cd01034, EriC_like, ClC chloride channel family	Back alignment and domain information

>gnl\|CDD\|238505 cd01033, ClC_like, Putative ClC chloride channel	Back alignment and domain information

>gnl\|CDD\|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>gnl\|CDD\|234963 PRK01610, PRK01610, putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>gnl\|CDD\|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>gnl\|CDD\|239654 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>gnl\|CDD\|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream	Back alignment and domain information

>gnl\|CDD\|238506 cd01034, EriC_like, ClC chloride channel family	Back alignment and domain information

>gnl\|CDD\|201313 pfam00571, CBS, CBS domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		729
KOG0474		762	consensus Cl- channel CLC-7 and related proteins (	100.0
PRK01862		574	putative voltage-gated ClC-type chloride channel C	100.0
KOG0475		696	consensus Cl- channel CLC-3 and related proteins (	100.0
KOG0476		931	consensus Cl- channel CLC-2 and related proteins (	100.0
cd03685		466	ClC_6_like ClC-6-like chloride channel proteins. T	100.0
cd03684		445	ClC_3_like ClC-3-like chloride channel proteins. T	100.0
cd03683		426	ClC_1_like ClC-1-like chloride channel proteins. T	100.0
cd01036		416	ClC_euk Chloride channel, ClC. These domains are f	100.0
PRK01610		418	putative voltage-gated ClC-type chloride channel C	100.0
PRK05277		438	chloride channel protein; Provisional	100.0
cd01031		402	EriC ClC chloride channel EriC. This domain is fou	100.0
cd01033		388	ClC_like Putative ClC chloride channel. Clc protei	100.0
COG0038		443	EriC Chloride channel protein EriC [Inorganic ion	100.0
cd01034		390	EriC_like ClC chloride channel family. These prote	100.0
PF00654		355	Voltage_CLC: Voltage gated chloride channel Mutati	100.0
cd00400		383	Voltage_gated_ClC CLC voltage-gated chloride chann	100.0
cd03682		378	ClC_sycA_like ClC sycA-like chloride channel prote	100.0
PRK03655		414	putative ion channel protein; Provisional	100.0
cd01034		390	EriC_like ClC chloride channel family. These prote	99.69
PRK01862		574	putative voltage-gated ClC-type chloride channel C	99.69
cd01033		388	ClC_like Putative ClC chloride channel. Clc protei	99.65
PRK05277		438	chloride channel protein; Provisional	99.61
COG3448		382	CBS-domain-containing membrane protein [Signal tra	99.6
COG2524		294	Predicted transcriptional regulator, contains C-te	99.59
cd00400		383	Voltage_gated_ClC CLC voltage-gated chloride chann	99.55
PRK11543		321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.54
PRK01610		418	putative voltage-gated ClC-type chloride channel C	99.52
PRK10892		326	D-arabinose 5-phosphate isomerase; Provisional	99.52
cd01031		402	EriC ClC chloride channel EriC. This domain is fou	99.51
cd03682		378	ClC_sycA_like ClC sycA-like chloride channel prote	99.5
COG3620		187	Predicted transcriptional regulator with C-termina	99.5
cd04641		120	CBS_pair_28 The CBS domain, named after human CBS,	99.38
cd04619		114	CBS_pair_6 The CBS domain, named after human CBS,	99.37
cd04603		111	CBS_pair_KefB_assoc This cd contains two tandem re	99.37
TIGR03520		408	GldE gliding motility-associated protein GldE. Mem	99.35
COG4109		432	Predicted transcriptional regulator containing CBS	99.35
PRK07807		479	inosine 5-monophosphate dehydrogenase; Validated	99.34
PRK15094		292	magnesium/cobalt efflux protein CorC; Provisional	99.32
cd04618		98	CBS_pair_5 The CBS domain, named after human CBS,	99.32
cd04593		115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.3
cd04600		124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.29
cd04617		118	CBS_pair_4 The CBS domain, named after human CBS,	99.28
cd04639		111	CBS_pair_26 The CBS domain, named after human CBS,	99.28
TIGR01137		454	cysta_beta cystathionine beta-synthase. Members of	99.27
cd04630		114	CBS_pair_17 The CBS domain, named after human CBS,	99.27
cd04605		110	CBS_pair_MET2_assoc This cd contains two tandem re	99.27
PRK07107		502	inosine 5-monophosphate dehydrogenase; Validated	99.27
cd03685		466	ClC_6_like ClC-6-like chloride channel proteins. T	99.27
cd04596		108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.26
cd04623		113	CBS_pair_10 The CBS domain, named after human CBS,	99.26
cd04629		114	CBS_pair_16 The CBS domain, named after human CBS,	99.26
cd04607		113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.25
cd04624		112	CBS_pair_11 The CBS domain, named after human CBS,	99.25
PF00654		355	Voltage_CLC: Voltage gated chloride channel Mutati	99.25
cd04801		114	CBS_pair_M50_like This cd contains two tandem repe	99.25
cd04614		96	CBS_pair_1 The CBS domain, named after human CBS,	99.24
cd04803		122	CBS_pair_15 The CBS domain, named after human CBS,	99.24
cd04608		124	CBS_pair_PALP_assoc This cd contains two tandem re	99.23
cd04583		109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.23
cd04642		126	CBS_pair_29 The CBS domain, named after human CBS,	99.23
cd04615		113	CBS_pair_2 The CBS domain, named after human CBS,	99.23
COG0038		443	EriC Chloride channel protein EriC [Inorganic ion	99.22
cd04604		114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.22
cd04582		106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.22
cd04586		135	CBS_pair_BON_assoc This cd contains two tandem rep	99.22
cd04626		111	CBS_pair_13 The CBS domain, named after human CBS,	99.22
cd04627		123	CBS_pair_14 The CBS domain, named after human CBS,	99.21
cd04621		135	CBS_pair_8 The CBS domain, named after human CBS,	99.21
cd04595		110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.21
cd04643		116	CBS_pair_30 The CBS domain, named after human CBS,	99.2
cd04588		110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.2
cd04636		132	CBS_pair_23 The CBS domain, named after human CBS,	99.19
cd04587		113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.19
cd04620		115	CBS_pair_7 The CBS domain, named after human CBS,	99.19
cd04613		114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.19
cd04622		113	CBS_pair_9 The CBS domain, named after human CBS,	99.19
cd04800		111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.19
cd04635		122	CBS_pair_22 The CBS domain, named after human CBS,	99.19
cd04632		128	CBS_pair_19 The CBS domain, named after human CBS,	99.18
cd04625		112	CBS_pair_12 The CBS domain, named after human CBS,	99.18
cd04612		111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.17
cd04611		111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.17
PRK03655		414	putative ion channel protein; Provisional	99.17
TIGR00400		449	mgtE Mg2+ transporter (mgtE). This family of proka	99.17
cd04589		111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.17
cd04631		125	CBS_pair_18 The CBS domain, named after human CBS,	99.16
cd04602		114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.16
TIGR01303		475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.16
PLN02274		505	inosine-5'-monophosphate dehydrogenase	99.15
cd01036		416	ClC_euk Chloride channel, ClC. These domains are f	99.15
cd04802		112	CBS_pair_3 The CBS domain, named after human CBS,	99.15
cd03683		426	ClC_1_like ClC-1-like chloride channel proteins. T	99.15
cd04640		126	CBS_pair_27 The CBS domain, named after human CBS,	99.15
PRK14869		546	putative manganese-dependent inorganic pyrophospha	99.14
cd04590		111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.14
cd04599		105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.14
cd04585		122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.14
TIGR01302		450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.14
cd04591		105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.14
cd04637		122	CBS_pair_24 The CBS domain, named after human CBS,	99.13
TIGR00393		268	kpsF KpsF/GutQ family protein. This model describe	99.13
cd03684		445	ClC_3_like ClC-3-like chloride channel proteins. T	99.12
PRK11573		413	hypothetical protein; Provisional	99.12
cd04601		110	CBS_pair_IMPDH This cd contains two tandem repeats	99.12
cd04606		109	CBS_pair_Mg_transporter This cd contains two tande	99.1
PTZ00314		495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.1
COG0517		117	FOG: CBS domain [General function prediction only]	99.1
cd04594		104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.09
cd04609		110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.09
PRK05567		486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.09
cd02205		113	CBS_pair The CBS domain, named after human CBS, is	99.08
cd04584		121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.08
cd04610		107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.08
cd04633		121	CBS_pair_20 The CBS domain, named after human CBS,	99.07
COG2905		610	Predicted signal-transduction protein containing c	99.06
COG1253		429	TlyC Hemolysins and related proteins containing CB	99.04
cd04638		106	CBS_pair_25 The CBS domain, named after human CBS,	99.03
cd04598		119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.02
cd04634		143	CBS_pair_21 The CBS domain, named after human CBS,	99.0
COG4536		423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.98
cd04592		133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.91
COG2239		451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.85
COG4535		293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.71
PF00571		57	CBS: CBS domain CBS domain web page. Mutations in	98.69
PF00571		57	CBS: CBS domain CBS domain web page. Mutations in	98.53
KOG1764		381	consensus 5'-AMP-activated protein kinase, gamma s	98.48
KOG2550		503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.39
TIGR01186		363	proV glycine betaine/L-proline transport ATP bindi	98.28
PRK10070		400	glycine betaine transporter ATP-binding subunit; P	98.2
COG3448		382	CBS-domain-containing membrane protein [Signal tra	98.02
PRK14869		546	putative manganese-dependent inorganic pyrophospha	97.79
TIGR00400		449	mgtE Mg2+ transporter (mgtE). This family of proka	97.76
cd04597		113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.74
KOG0475		696	consensus Cl- channel CLC-3 and related proteins (	97.65
COG3620		187	Predicted transcriptional regulator with C-termina	97.63
COG2524		294	Predicted transcriptional regulator, contains C-te	97.63
cd04603		111	CBS_pair_KefB_assoc This cd contains two tandem re	97.57
cd04597		113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.53
cd04619		114	CBS_pair_6 The CBS domain, named after human CBS,	97.44
PRK05567		486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.26
cd04607		113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.2
cd04641		120	CBS_pair_28 The CBS domain, named after human CBS,	97.17
smart00116		49	CBS Domain in cystathionine beta-synthase and othe	97.17
cd04618		98	CBS_pair_5 The CBS domain, named after human CBS,	97.15
cd04600		124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.14
cd04620		115	CBS_pair_7 The CBS domain, named after human CBS,	97.12
KOG0474		762	consensus Cl- channel CLC-7 and related proteins (	97.1
cd04585		122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.1
cd04596		108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.08
cd04592		133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.08
cd04606		109	CBS_pair_Mg_transporter This cd contains two tande	97.08
cd04625		112	CBS_pair_12 The CBS domain, named after human CBS,	97.05
cd04610		107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.04
cd04627		123	CBS_pair_14 The CBS domain, named after human CBS,	97.03
cd04614		96	CBS_pair_1 The CBS domain, named after human CBS,	97.01
cd04630		114	CBS_pair_17 The CBS domain, named after human CBS,	97.01
PRK07107		502	inosine 5-monophosphate dehydrogenase; Validated	96.96
PRK10892		326	D-arabinose 5-phosphate isomerase; Provisional	96.96
cd04615		113	CBS_pair_2 The CBS domain, named after human CBS,	96.95
cd04604		114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	96.95
cd04587		113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	96.95
cd04803		122	CBS_pair_15 The CBS domain, named after human CBS,	96.91
cd04608		124	CBS_pair_PALP_assoc This cd contains two tandem re	96.9
cd04595		110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	96.89
KOG1764		381	consensus 5'-AMP-activated protein kinase, gamma s	96.89
cd04582		106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	96.88
cd04639		111	CBS_pair_26 The CBS domain, named after human CBS,	96.88
cd04611		111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	96.88
cd04801		114	CBS_pair_M50_like This cd contains two tandem repe	96.87
PRK11543		321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	96.87
cd04583		109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	96.86
cd04635		122	CBS_pair_22 The CBS domain, named after human CBS,	96.86
cd04621		135	CBS_pair_8 The CBS domain, named after human CBS,	96.85
cd04613		114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	96.85
cd04602		114	CBS_pair_IMPDH_2 This cd contains two tandem repea	96.82
cd04601		110	CBS_pair_IMPDH This cd contains two tandem repeats	96.82
cd04631		125	CBS_pair_18 The CBS domain, named after human CBS,	96.82
smart00116		49	CBS Domain in cystathionine beta-synthase and othe	96.82
cd04802		112	CBS_pair_3 The CBS domain, named after human CBS,	96.8
cd04586		135	CBS_pair_BON_assoc This cd contains two tandem rep	96.78
cd04605		110	CBS_pair_MET2_assoc This cd contains two tandem re	96.78
cd04622		113	CBS_pair_9 The CBS domain, named after human CBS,	96.77
cd04623		113	CBS_pair_10 The CBS domain, named after human CBS,	96.76
cd04588		110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	96.76
cd04612		111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	96.73
cd04589		111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	96.72
cd04624		112	CBS_pair_11 The CBS domain, named after human CBS,	96.71
cd04629		114	CBS_pair_16 The CBS domain, named after human CBS,	96.71
cd04800		111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	96.71
TIGR00393		268	kpsF KpsF/GutQ family protein. This model describe	96.7
cd04642		126	CBS_pair_29 The CBS domain, named after human CBS,	96.69
PRK07807		479	inosine 5-monophosphate dehydrogenase; Validated	96.69
PLN02274		505	inosine-5'-monophosphate dehydrogenase	96.66
cd04633		121	CBS_pair_20 The CBS domain, named after human CBS,	96.66
cd04617		118	CBS_pair_4 The CBS domain, named after human CBS,	96.64
TIGR01137		454	cysta_beta cystathionine beta-synthase. Members of	96.63
cd04593		115	CBS_pair_EriC_assoc_bac_arch This cd contains two	96.63
cd04643		116	CBS_pair_30 The CBS domain, named after human CBS,	96.63
cd04636		132	CBS_pair_23 The CBS domain, named after human CBS,	96.62
cd04626		111	CBS_pair_13 The CBS domain, named after human CBS,	96.61
TIGR01303		475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.6
cd04594		104	CBS_pair_EriC_assoc_archaea This cd contains two t	96.59
COG0517		117	FOG: CBS domain [General function prediction only]	96.59
cd04599		105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	96.59
cd04637		122	CBS_pair_24 The CBS domain, named after human CBS,	96.54
cd04584		121	CBS_pair_ACT_assoc This cd contains two tandem rep	96.5
cd04632		128	CBS_pair_19 The CBS domain, named after human CBS,	96.47
COG4109		432	Predicted transcriptional regulator containing CBS	96.38
cd04590		111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	96.37
cd04640		126	CBS_pair_27 The CBS domain, named after human CBS,	96.34
PRK15094		292	magnesium/cobalt efflux protein CorC; Provisional	96.33
cd02205		113	CBS_pair The CBS domain, named after human CBS, is	96.32
cd04591		105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	96.28
cd04598		119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.15
TIGR03520		408	GldE gliding motility-associated protein GldE. Mem	96.14
cd04609		110	CBS_pair_PALP_assoc2 This cd contains two tandem r	96.1
PTZ00314		495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.09
TIGR01302		450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.09
COG2239		451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	96.01
COG2905		610	Predicted signal-transduction protein containing c	95.97
cd04638		106	CBS_pair_25 The CBS domain, named after human CBS,	95.82
cd04634		143	CBS_pair_21 The CBS domain, named after human CBS,	95.8
COG4175		386	ProV ABC-type proline/glycine betaine transport sy	95.79
KOG0476		931	consensus Cl- channel CLC-2 and related proteins (	95.65
TIGR03415		382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.62
TIGR01186		363	proV glycine betaine/L-proline transport ATP bindi	94.81
PRK10070		400	glycine betaine transporter ATP-binding subunit; P	93.19
PRK11573		413	hypothetical protein; Provisional	92.95
COG4535		293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	92.24
COG1253		429	TlyC Hemolysins and related proteins containing CB	91.75
KOG2550		503	consensus IMP dehydrogenase/GMP reductase [Nucleot	89.93
KOG2118		498	consensus Predicted membrane protein, contains two	88.16
COG1125		309	OpuBA ABC-type proline/glycine betaine transport s	84.07
TIGR03415		382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	83.47

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=1.3e-108  Score=877.56  Aligned_cols=697  Identities=59%  Similarity=0.990  Sum_probs=648.9

Q ss_pred             CcccccchhhhHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----chhhH
Q 004817            6 FCRINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDR-----YLQGF   80 (729)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~   80 (729)
                      .||..||+.|+++||.|.+.+.++|...||..++++|+++|+++.+.+..++.+..+++......+.+..     ++..+
T Consensus        59 DYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~  138 (762)
T KOG0474|consen   59 DYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSL  138 (762)
T ss_pred             chhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999998887755554443     67778


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 004817           81 LYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSC  160 (729)
Q Consensus        81 ~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~  160 (729)
                      +.|....+++.++++.++.+++|.+.||||||||.|+||++.++..++||++.|+++++.++++|+-+|+|||++|.|++
T Consensus       139 l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~  218 (762)
T KOG0474|consen  139 LVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSV  218 (762)
T ss_pred             HHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCCccchhhhhhhccCChhhhhHHHHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 004817          161 IASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVV  240 (729)
Q Consensus       161 ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~  240 (729)
                      +|+.++|+-+..+++.|||+|+|++++|||.++.||+|||+||+|+||++|++|++|+.++.|+...+|+.|+++.++++
T Consensus       219 Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f  298 (762)
T KOG0474|consen  219 VAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAF  298 (762)
T ss_pred             HHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCccccCCCcceEEeeccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHH
Q 004817          241 VLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLL  320 (729)
Q Consensus       241 v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~  320 (729)
                      +.+.++.++.+|+|..|+.+..+.|++.+....|+.+|+++++++|+++|++|.+|+.++.+...++.+ ..+.+..|++
T Consensus       299 ~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvl  377 (762)
T KOG0474|consen  299 VLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVL  377 (762)
T ss_pred             hHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHH
Confidence            999889999999999999999999998766679999999999999999999999999997777766655 5566788999


Q ss_pred             HHHHHHHHHhhhhhccccccccCCCCCCCCC-CCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCc
Q 004817          321 LALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEF  399 (729)
Q Consensus       321 ~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~-~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~  399 (729)
                      ++++++++++++.|..|.+++|+++|.+..+ .||+         +.|+.|.||+++++++++++++++++|+... +++
T Consensus       378 ea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~---------f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~-~ef  447 (762)
T KOG0474|consen  378 EALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPT---------FFCPDGEYNDLATLFFNTNDDAVRNLFHSPT-NEF  447 (762)
T ss_pred             HHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCcc---------ccCCCCchhHHHHHHcCCcHHHHHHHhcCCC-Ccc
Confidence            9999999999999999999999999987554 5654         6899999999999999999999999999877 889


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHhhhhhhccchhHHHHH
Q 004817          400 QPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI  479 (729)
Q Consensus       400 ~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~vG~aa~~a~~~~~pls~~vl  479 (729)
                      ....|++++++.++++..|+|...|.|+|.|++.+||+.||++|.++..+..++|+.||++||||+++|++|+++|..||
T Consensus       448 ~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~~id~G~yAllGAAa~LGG~mRMTvSL~VI  527 (762)
T KOG0474|consen  448 GILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYTNIDPGLYALLGAAAFLGGVMRMTVSLCVI  527 (762)
T ss_pred             chhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhhccCchHHHHHhHHHHhCCeEEEEeeeehH
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHhCCcchHHHHHHHHHHHHHHHhhcCCchHHHHHHhcCCCCCCCCCCCcccccchhcccccCCCeeEecCcccHHHH
Q 004817          480 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQI  559 (729)
Q Consensus       480 ~~Eltg~~~~~~p~lia~~va~~v~~~~~~sly~~~l~~~G~~~~~~~~~~~l~~~~v~dvm~~~~~~~~v~~~~~v~~a  559 (729)
                      ++|+| +-.+.+|+|++.++|..+.+.++.++||.+++.+|.|+++.++++.+++++++|+|++  ++++++.-+++..+
T Consensus       528 l~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~I  604 (762)
T KOG0474|consen  528 LLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSK--PVICLNRVEKVAVI  604 (762)
T ss_pred             HHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccC--CeEEEechhhHHHH
Confidence            99999 5578889999999999999999999999999999999999999999999999999999  99999999999999


Q ss_pred             HHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcccc
Q 004817          560 VDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEE  639 (729)
Q Consensus       560 ~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~  639 (729)
                      ++.++++.|++|||+|+..      .++.+++.|+|-|++++..++++++.++...+.....++..+.+|+.+...+++|
T Consensus       605 v~vLk~t~HngFPVvd~~~------~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~d  678 (762)
T KOG0474|consen  605 VDVLKSTNHNGFPVVDEPP------SNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIED  678 (762)
T ss_pred             HHHHHhcCcCCCccccCCC------CccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhh
Confidence            9999999999999999852      1233789999999999999999988766555555555578899999998889999


Q ss_pred             cccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhhhcCC
Q 004817          640 VAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH  719 (729)
Q Consensus       640 ~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~~~~~  719 (729)
                      +.+++.++++++|++++|+++|++|++++++.++..+|++.++|++.|+++     .++++|++||+|+.++...+..++
T Consensus       679 v~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-----~~~~~gilTR~D~~~~~~l~~~~~  753 (762)
T KOG0474|consen  679 VHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-----TNRVVGILTRKDLARYRILGLEPH  753 (762)
T ss_pred             hhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC-----CCceeEEEehhhhhhHHHhccccc
Confidence            999999999999999999999999999999999999999999999999998     788999999999999888888888


Q ss_pred             cccccccC
Q 004817          720 LERSKSGQ  727 (729)
Q Consensus       720 ~~~~~~~~  727 (729)
                      ..+.+.++
T Consensus       754 v~~~~~~~  761 (762)
T KOG0474|consen  754 VDELKMGK  761 (762)
T ss_pred             cccccccc
Confidence            77766654

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd03685 ClC_6_like ClC-6-like chloride channel proteins	Back alignment and domain information

>cd03684 ClC_3_like ClC-3-like chloride channel proteins	Back alignment and domain information

>cd03683 ClC_1_like ClC-1-like chloride channel proteins	Back alignment and domain information

>cd01036 ClC_euk Chloride channel, ClC	Back alignment and domain information

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>PRK05277 chloride channel protein; Provisional	Back alignment and domain information

>cd01031 EriC ClC chloride channel EriC	Back alignment and domain information

>cd01033 ClC_like Putative ClC chloride channel	Back alignment and domain information

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01034 EriC_like ClC chloride channel family	Back alignment and domain information

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease	Back alignment and domain information

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel	Back alignment and domain information

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins	Back alignment and domain information

>PRK03655 putative ion channel protein; Provisional	Back alignment and domain information

>cd01034 EriC_like ClC chloride channel family	Back alignment and domain information

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>cd01033 ClC_like Putative ClC chloride channel	Back alignment and domain information

>PRK05277 chloride channel protein; Provisional	Back alignment and domain information

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]	Back alignment and domain information

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]	Back alignment and domain information

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel	Back alignment and domain information

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional	Back alignment and domain information

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional	Back alignment and domain information

>cd01031 EriC ClC chloride channel EriC	Back alignment and domain information

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins	Back alignment and domain information

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]	Back alignment and domain information

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism	Back alignment and domain information

>TIGR03520 GldE gliding motility-associated protein GldE	Back alignment and domain information

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]	Back alignment and domain information

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional	Back alignment and domain information

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea	Back alignment and domain information

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain	Back alignment and domain information

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>TIGR01137 cysta_beta cystathionine beta-synthase	Back alignment and domain information

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain	Back alignment and domain information

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>cd03685 ClC_6_like ClC-6-like chloride channel proteins	Back alignment and domain information

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream	Back alignment and domain information

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream	Back alignment and domain information

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease	Back alignment and domain information

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50	Back alignment and domain information

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream	Back alignment and domain information

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA	Back alignment and domain information

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein	Back alignment and domain information

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA	Back alignment and domain information

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	Back alignment and domain information

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain	Back alignment and domain information

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain	Back alignment and domain information

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain	Back alignment and domain information

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC	Back alignment and domain information

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain	Back alignment and domain information

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC	Back alignment and domain information

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream	Back alignment and domain information

>PRK03655 putative ion channel protein; Provisional	Back alignment and domain information

>TIGR00400 mgtE Mg2+ transporter (mgtE)	Back alignment and domain information

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain	Back alignment and domain information

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein	Back alignment and domain information

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein	Back alignment and domain information

>PLN02274 inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>cd01036 ClC_euk Chloride channel, ClC	Back alignment and domain information

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd03683 ClC_1_like ClC-1-like chloride channel proteins	Back alignment and domain information

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional	Back alignment and domain information

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain	Back alignment and domain information

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain	Back alignment and domain information

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria	Back alignment and domain information

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria	Back alignment and domain information

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>TIGR00393 kpsF KpsF/GutQ family protein	Back alignment and domain information

>cd03684 ClC_3_like ClC-3-like chloride channel proteins	Back alignment and domain information

>PRK11573 hypothetical protein; Provisional	Back alignment and domain information

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein	Back alignment and domain information

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE	Back alignment and domain information

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional	Back alignment and domain information

>COG0517 FOG: CBS domain [General function prediction only]	Back alignment and domain information

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea	Back alignment and domain information

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream	Back alignment and domain information

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed	Back alignment and domain information

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria	Back alignment and domain information

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream	Back alignment and domain information

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]	Back alignment and domain information

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]	Back alignment and domain information

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain	Back alignment and domain information

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes	Back alignment and domain information

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00571 CBS: CBS domain CBS domain web page	Back alignment and domain information

>PF00571 CBS: CBS domain CBS domain web page	Back alignment and domain information

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]	Back alignment and domain information

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit	Back alignment and domain information

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]	Back alignment and domain information

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional	Back alignment and domain information

>TIGR00400 mgtE Mg2+ transporter (mgtE)	Back alignment and domain information

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream	Back alignment and domain information

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]	Back alignment and domain information

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]	Back alignment and domain information

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism	Back alignment and domain information

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream	Back alignment and domain information

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed	Back alignment and domain information

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream	Back alignment and domain information

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins	Back alignment and domain information

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain	Back alignment and domain information

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria	Back alignment and domain information

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream	Back alignment and domain information

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes	Back alignment and domain information

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE	Back alignment and domain information

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream	Back alignment and domain information

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional	Back alignment and domain information

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein	Back alignment and domain information

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain	Back alignment and domain information

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream	Back alignment and domain information

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain	Back alignment and domain information

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]	Back alignment and domain information

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA	Back alignment and domain information

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream	Back alignment and domain information

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50	Back alignment and domain information

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional	Back alignment and domain information

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA	Back alignment and domain information

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC	Back alignment and domain information

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein	Back alignment and domain information

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein	Back alignment and domain information

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins	Back alignment and domain information

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	Back alignment and domain information

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain	Back alignment and domain information

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain	Back alignment and domain information

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC	Back alignment and domain information

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain	Back alignment and domain information

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain	Back alignment and domain information

>TIGR00393 kpsF KpsF/GutQ family protein	Back alignment and domain information

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>PLN02274 inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>TIGR01137 cysta_beta cystathionine beta-synthase	Back alignment and domain information

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea	Back alignment and domain information

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein	Back alignment and domain information

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea	Back alignment and domain information

>COG0517 FOG: CBS domain [General function prediction only]	Back alignment and domain information

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain	Back alignment and domain information

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria	Back alignment and domain information

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]	Back alignment and domain information

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain	Back alignment and domain information

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional	Back alignment and domain information

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria	Back alignment and domain information

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain	Back alignment and domain information

>TIGR03520 GldE gliding motility-associated protein GldE	Back alignment and domain information

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream	Back alignment and domain information

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional	Back alignment and domain information

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]	Back alignment and domain information

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein	Back alignment and domain information

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit	Back alignment and domain information

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK11573 hypothetical protein; Provisional	Back alignment and domain information

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]	Back alignment and domain information

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]	Back alignment and domain information

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]	Back alignment and domain information

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		729
1kpl_A		473	Crystal Structure Of The Clc Chloride Channel From		1e-12
3org_A		632	Crystal Structure Of A Eukaryotic Clc Transporter L		4e-10
3nd0_A		466	X-Ray Crystal Structure Of A Slow Cyanobacterial Cl		2e-08

>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S. Typhimurium Length = 473

Back alignment and structure

Iteration: 1

Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 18/211 (8%) Query: 37 LACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNXXXXXXXXX 96 +A +VG LTGL+ AV + ++ A+V + L + ++ Sbjct: 38 MAAVVGTLTGLVGVAFEKAVSWVQNMRIGALVQVADHAFLLWPLAFI--LSALLAMVGYF 95 Query: 97 XXXXXXPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVH 156 P A G GIPEI+ L + + L VK IG +G + AG+ LG+EGP V Sbjct: 96 LVRKFAPEAGGSGIPEIEGALEELRPVRWW--RVLPVKFIGGMGTLGAGMVLGREGPTVQ 153 Query: 157 IGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSL 216 IG + ++ D R++ + R L+ G+++G+ AAF AP+ G+LF + Sbjct: 154 IGGNLGRMV----LDVFRMR--------SAEARHTLLATGAAAGLSAAFNAPLAGILFII 201 Query: 217 EEVATWWRSALLWRTFFSTAVVV--VVLRAF 245 EE+ +R L+ T V++ +V R F Sbjct: 202 EEMRPQFRYNLISIKAVFTGVIMSSIVFRIF 232

PyMOL of 1kpl

>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter Length = 632

Back alignment and structure

>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+ ANTIPORTER Length = 466

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		729
3org_A		632	CMCLC; transporter, transport protein; 3.50A {Cyan	1e-173
1ots_A		465	Voltage-gated CLC-type chloride channel ERIC; CLC	1e-56
3nd0_A		466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	7e-53
2j9l_A		185	Chloride channel protein 5; ION channel, ION trans	4e-26
2pfi_A		164	Chloride channel protein CLC-Ka; cystathionine bet	3e-09
3sl7_A		180	CBS domain-containing protein CBSX2; CBS-PAIR prot	5e-09
1o50_A		157	CBS domain-containing predicted protein TM0935; CB	5e-08
2d4z_A		250	Chloride channel protein; CLC chloride channel cyt	2e-07
2emq_A		157	Hypothetical conserved protein; CBS domains, NPPSF	4e-06
3lqn_A		150	CBS domain protein; csgid, structural genomics, un	3e-05
2v8q_E		330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-05
2ef7_A		133	Hypothetical protein ST2348; CBS-domain, structura	6e-05
3kh5_A		280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-05
3kh5_A		280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-04
1yav_A		159	Hypothetical protein BSU14130; cystathionine beta	2e-04
2rih_A		141	Conserved protein with 2 CBS domains; bateman doma	2e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3ddj_A		296	CBS domain-containing protein; structural genomics	4e-04
2nyc_A		144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	8e-04

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632	Back alignment and structure

 Score =  509 bits (1312), Expect = e-173
 Identities = 148/703 (21%), Positives = 263/703 (37%), Gaps = 97/703 (13%)

Query: 25  VQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFT 84
           +  L Y+        L+G+   L    ++LAV  +   ++              G++ + 
Sbjct: 1   MGSLMYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRM----KISRLAGRFAGYILYV 56

Query: 85  GVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGV--DTPNMFGATTLIVKIIGSIGAV 142
                L L++   C   +  A G G+P++K+ L+G      +      L  K +G I A+
Sbjct: 57  VSGVALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAI 116

Query: 143 AAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVC 202
             GL +G EGP VHI   IA    + G         +     +   R   +    + G+ 
Sbjct: 117 GGGLPVGWEGPNVHIACIIAHQFYRLGV--------FKELCTDRALRLQTLAAACAVGLA 168

Query: 203 AAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGL 262
           ++F AP+GGVL+S+E +A+++     W+   S     +V               + T  +
Sbjct: 169 SSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELL-----------YTTPLV 217

Query: 263 IMFDVSNVPVR-YHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLL 321
             F+ +N           +   ++G + G+LG L+   +  +  L   +      ++  L
Sbjct: 218 EAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELR--MRHYPGTNRYFL 275

Query: 322 ALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLT 381
              V++F S  QY                                 P    NDL   +  
Sbjct: 276 VGVVALFASALQYPFRLF-------------------------ALDPRATINDLFKAVPL 310

Query: 382 TNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRL 441
              D             F  + +++  I+  IL  ++ G+ +P+G+F+P  L+G+ +GRL
Sbjct: 311 YQTD------------HFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRL 358

Query: 442 LGMAMGSY--TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNL-LLLPITMIVLL 498
            G  M       I  G YAV+GAA+  AG  R  +S  VI  E+T  +  L+P+ +I +L
Sbjct: 359 YGELMRVVFGNAIVPGSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPV-LISVL 416

Query: 499 IAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQ 558
           +A  VG++FN S+YE ++ +K LP++          +T  E++        L    +   
Sbjct: 417 LAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQH 476

Query: 559 IVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTE 617
           I  +L        FPV+D               L G I R  +V  L+       +    
Sbjct: 477 IKGILEKFPNRLVFPVIDA-----------NGYLLGAISRKEIVDRLQHVLEDVPEPIAG 525

Query: 618 E---------WEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESM 668
                              V+         +   T+  +E    L    + +P  V    
Sbjct: 526 HRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYS 585

Query: 669 SVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 711
            V +   LF  +    + V  +        +VGI+ R+D+   
Sbjct: 586 LVRQLHFLFVMLMPSMIYVTER------GKLVGIVEREDVAYG 622

PyMOL of 3org

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465	Back alignment and structure

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466	Back alignment and structure

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185	Back alignment and structure

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164	Back alignment and structure

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180	Back alignment and structure

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157	Back alignment and structure

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250	Back alignment and structure

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157	Back alignment and structure

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150	Back alignment and structure

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330	Back alignment and structure

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133	Back alignment and structure

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280	Back alignment and structure

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280	Back alignment and structure

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159	Back alignment and structure

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296	Back alignment and structure

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		729
3org_A		632	CMCLC; transporter, transport protein; 3.50A {Cyan	100.0
3nd0_A		466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	100.0
1ots_A		465	Voltage-gated CLC-type chloride channel ERIC; CLC	100.0
4ene_A		446	CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem	100.0
4esy_A		170	CBS domain containing membrane protein; structural	99.73
2d4z_A		250	Chloride channel protein; CLC chloride channel cyt	99.72
3k6e_A		156	CBS domain protein; streptococcus pneumoniae TIGR4	99.69
3i8n_A		130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.68
3hf7_A		130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.68
3kpb_A		122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.67
3lv9_A		148	Putative transporter; CBS domain, PSI, MCSG, struc	99.67
3jtf_A		129	Magnesium and cobalt efflux protein; CBS domain, C	99.66
2ef7_A		133	Hypothetical protein ST2348; CBS-domain, structura	99.66
3lfr_A		136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.65
3oco_A		153	Hemolysin-like protein containing CBS domains; str	99.64
3lhh_A		172	CBS domain protein; structural genomics, PSI-2, pr	99.64
3fhm_A		165	Uncharacterized protein ATU1752; CBS domain, proka	99.64
2rih_A		141	Conserved protein with 2 CBS domains; bateman doma	99.64
3gby_A		128	Uncharacterized protein CT1051; CBS domain, struct	99.64
3nqr_A		127	Magnesium and cobalt efflux protein CORC; structur	99.64
3k2v_A		149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.63
2p9m_A		138	Hypothetical protein MJ0922; structural genomics,	99.63
2yzi_A		138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.63
3fv6_A		159	YQZB protein; CBS domain dimer, metabolism regulat	99.62
3lqn_A		150	CBS domain protein; csgid, structural genomics, un	99.62
3ctu_A		156	CBS domain protein; structural genomics, PSI-2, pr	99.61
1pbj_A		125	Hypothetical protein; structural genomics, domain,	99.61
2rc3_A		135	CBS domain; in SITU proteolysis, BR, structural ge	99.61
4gqw_A		152	CBS domain-containing protein CBSX1, chloroplasti;	99.61
3ocm_A		173	Putative membrane protein; structural genomics, PS	99.6
3org_A		632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.6
2emq_A		157	Hypothetical conserved protein; CBS domains, NPPSF	99.6
1o50_A		157	CBS domain-containing predicted protein TM0935; CB	99.59
1y5h_A		133	Hypothetical protein RV2626C; CBS domain, unknown	99.59
3oi8_A		156	Uncharacterized protein; structural genomics, PSI-	99.59
2o16_A		160	Acetoin utilization protein ACUB, putative; struct	99.59
2uv4_A		152	5'-AMP-activated protein kinase subunit gamma-1; t	99.59
3sl7_A		180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.59
2pfi_A		164	Chloride channel protein CLC-Ka; cystathionine bet	99.58
3kxr_A		205	Magnesium transporter, putative; cystathionine bet	99.57
2j9l_A		185	Chloride channel protein 5; ION channel, ION trans	99.57
2nyc_A		144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.57
1pvm_A		184	Conserved hypothetical protein TA0289; structural	99.57
1yav_A		159	Hypothetical protein BSU14130; cystathionine beta	99.56
4fry_A		157	Putative signal-transduction protein with CBS DOM;	99.56
3pc3_A		527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.54
3l2b_A		245	Probable manganase-dependent inorganic pyrophospha	99.53
1vr9_A		213	CBS domain protein/ACT domain protein; structural	99.49
2oux_A		286	Magnesium transporter; 10001B, structural genomics	99.46
3ddj_A		296	CBS domain-containing protein; structural genomics	99.46
2yvy_A		278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.46
3t4n_C		323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.44
1ots_A		465	Voltage-gated CLC-type chloride channel ERIC; CLC	99.42
3kh5_A		280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.41
2yzq_A		282	Putative uncharacterized protein PH1780; sheet/hel	99.41
3kh5_A		280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.39
3nd0_A		466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	99.38
3ddj_A		296	CBS domain-containing protein; structural genomics	99.38
2zy9_A		473	Mg2+ transporter MGTE; membrane protien, metal tra	99.36
2qrd_G		334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.35
4ene_A		446	CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem	99.35
2yzq_A		282	Putative uncharacterized protein PH1780; sheet/hel	99.32
2v8q_E		330	5'-AMP-activated protein kinase subunit gamma-1; p	99.28
3usb_A		511	Inosine-5'-monophosphate dehydrogenase; structural	99.24
3t4n_C		323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.22
2qrd_G		334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.2
2v8q_E		330	5'-AMP-activated protein kinase subunit gamma-1; p	99.19
4fxs_A		496	Inosine-5'-monophosphate dehydrogenase; structural	99.18
1zfj_A		491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.17
4af0_A		556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.12
1vrd_A		494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.11
4avf_A		490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.1
1me8_A		503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.08
1jcn_A		514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.0
2cu0_A		486	Inosine-5'-monophosphate dehydrogenase; structural	98.86
3ghd_A		70	A cystathionine beta-synthase domain protein FUSE	98.63
4esy_A		170	CBS domain containing membrane protein; structural	98.35
1vr9_A		213	CBS domain protein/ACT domain protein; structural	98.34
3fio_A		70	A cystathionine beta-synthase domain protein fused	98.24
3ghd_A		70	A cystathionine beta-synthase domain protein FUSE	98.23
3lv9_A		148	Putative transporter; CBS domain, PSI, MCSG, struc	98.07
3lhh_A		172	CBS domain protein; structural genomics, PSI-2, pr	98.05
2d4z_A		250	Chloride channel protein; CLC chloride channel cyt	98.04
3l2b_A		245	Probable manganase-dependent inorganic pyrophospha	98.01
2rih_A		141	Conserved protein with 2 CBS domains; bateman doma	98.0
3k2v_A		149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	97.99
3kpb_A		122	Uncharacterized protein MJ0100; CBS domain, S-aden	97.99
3gby_A		128	Uncharacterized protein CT1051; CBS domain, struct	97.98
3fio_A		70	A cystathionine beta-synthase domain protein fused	97.98
3nqr_A		127	Magnesium and cobalt efflux protein CORC; structur	97.98
2o16_A		160	Acetoin utilization protein ACUB, putative; struct	97.97
3oi8_A		156	Uncharacterized protein; structural genomics, PSI-	97.96
2yzi_A		138	Hypothetical protein PH0107; sheet/helix/sheet/she	97.96
3jtf_A		129	Magnesium and cobalt efflux protein; CBS domain, C	97.95
2p9m_A		138	Hypothetical protein MJ0922; structural genomics,	97.9
1pbj_A		125	Hypothetical protein; structural genomics, domain,	97.9
3lfr_A		136	Putative metal ION transporter; CBS, AMP, PSI, MCS	97.9
2ef7_A		133	Hypothetical protein ST2348; CBS-domain, structura	97.88
3fv6_A		159	YQZB protein; CBS domain dimer, metabolism regulat	97.86
3i8n_A		130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.85
3lqn_A		150	CBS domain protein; csgid, structural genomics, un	97.84
4gqw_A		152	CBS domain-containing protein CBSX1, chloroplasti;	97.83
3hf7_A		130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.81
3fhm_A		165	Uncharacterized protein ATU1752; CBS domain, proka	97.8
1y5h_A		133	Hypothetical protein RV2626C; CBS domain, unknown	97.8
3k6e_A		156	CBS domain protein; streptococcus pneumoniae TIGR4	97.8
2emq_A		157	Hypothetical conserved protein; CBS domains, NPPSF	97.79
1yav_A		159	Hypothetical protein BSU14130; cystathionine beta	97.78
1pvm_A		184	Conserved hypothetical protein TA0289; structural	97.77
3ctu_A		156	CBS domain protein; structural genomics, PSI-2, pr	97.77
3kxr_A		205	Magnesium transporter, putative; cystathionine bet	97.76
3sl7_A		180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.75
2rc3_A		135	CBS domain; in SITU proteolysis, BR, structural ge	97.74
3oco_A		153	Hemolysin-like protein containing CBS domains; str	97.73
3ocm_A		173	Putative membrane protein; structural genomics, PS	97.72
2pfi_A		164	Chloride channel protein CLC-Ka; cystathionine bet	97.7
2nyc_A		144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.7
1o50_A		157	CBS domain-containing predicted protein TM0935; CB	97.69
2j9l_A		185	Chloride channel protein 5; ION channel, ION trans	97.66
2uv4_A		152	5'-AMP-activated protein kinase subunit gamma-1; t	97.62
4fry_A		157	Putative signal-transduction protein with CBS DOM;	97.61
3pc3_A		527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.47
2oux_A		286	Magnesium transporter; 10001B, structural genomics	97.33
2yvy_A		278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.3
1me8_A		503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.2
2zy9_A		473	Mg2+ transporter MGTE; membrane protien, metal tra	97.18
3usb_A		511	Inosine-5'-monophosphate dehydrogenase; structural	97.01
4fxs_A		496	Inosine-5'-monophosphate dehydrogenase; structural	96.57
4af0_A		556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.18
1zfj_A		491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.17
2cu0_A		486	Inosine-5'-monophosphate dehydrogenase; structural	96.07
1vrd_A		494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.0
4avf_A		490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.98
1jcn_A		514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	95.48

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}	Back alignment and structure

Probab=100.00  E-value=1.6e-81  Score=729.52  Aligned_cols=602  Identities=23%  Similarity=0.372  Sum_probs=445.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 004817           30 YIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPG  109 (729)
Q Consensus        30 ~~~~~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~G  109 (729)
                      |..+.+++++++|+++|+++++|+..++++++++.+... ...+   ...|+.|++++++++++++++++++.|+++|||
T Consensus         6 ~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsG   81 (632)
T 3org_A            6 YLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISR-LAGR---FAGYILYVVSGVALCLLSTFWCAVLSTEAEGSG   81 (632)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh---hHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC
Confidence            334345589999999999999999999999987654322 1111   335666777888888899999999999999999


Q ss_pred             HHHHHHHHhCCC--CCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhh-ccCCh
Q 004817          110 IPEIKAYLNGVD--TPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLR-YFNND  186 (729)
Q Consensus       110 i~~i~~~l~g~~--~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~-~~~~~  186 (729)
                      |||++++++|..  .++++++|+++.|++++++++++|+|+|||||++|+|+++|+.+++    . +    +++ ...++
T Consensus        82 Ip~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~----~-~----~f~~~~~~~  152 (632)
T 3org_A           82 LPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYR----L-G----VFKELCTDR  152 (632)
T ss_dssp             HHHHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTT----S-H----HHHHHHHSH
T ss_pred             HHHHHHHHhCccccccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhh----h-h----hhccccCCH
Confidence            999999999864  4578899999999999999999999999999999999999998875    1 0    222 11267


Q ss_pred             hhhhHHHHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEe
Q 004817          187 RDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFD  266 (729)
Q Consensus       187 ~~~r~li~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~  266 (729)
                      .+||.+++||+|||+||+||||++|++|++|++.++|+.+.+|+.+++|++++++++.+...  .....+|+.    .|+
T Consensus       153 ~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~--~~~~~~~~~----~~~  226 (632)
T 3org_A          153 ALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTT--PLVEAFEGT----NFD  226 (632)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC--ccccccccc----ccc
Confidence            78999999999999999999999999999999999999999999999999998876643210  000011211    122


Q ss_pred             eccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCC
Q 004817          267 VSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACD  346 (729)
Q Consensus       267 ~~~~~~~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~  346 (729)
                      +   ..++++.++ +++++|++||++|.+|+++++++.++  ++++..+.++++.+++++++++.+  ++|..       
T Consensus       227 ~---~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l--~~p~~-------  291 (632)
T 3org_A          227 A---SDVSRTQTL-LYAILGALMGVLGALFIRCVRSIYEL--RMRHYPGTNRYFLVGVVALFASAL--QYPFR-------  291 (632)
T ss_dssp             -----CCCCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSTTCCTHHHHHHHHHHHHHH--TTTC--------
T ss_pred             c---cCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcchhHHHHHHHHHHHHHHH--HHHHH-------
Confidence            2   245778889 99999999999999999999988776  222222345677777777776643  33443       


Q ss_pred             CCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCC---CCCcchhHHHHHHHHHHHHHHHHhcCCC
Q 004817          347 PSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNT---PTEFQPSSILIFFILYCILGLITFGIAV  423 (729)
Q Consensus       347 ~~~~~~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~ll~~~~lk~~~t~lt~g~G~  423 (729)
                               .|+ +         .+++.+            +++++...   .++..+..+++++++|+++|++|+|+|+
T Consensus       292 ---------~g~-~---------~~~~~i------------~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~  340 (632)
T 3org_A          292 ---------LFA-L---------DPRATI------------NDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPL  340 (632)
T ss_dssp             ------------------------CHHHH------------HHHHSCC----------CCSSHHHHHHHHHHHHHTTSSS
T ss_pred             ---------hcC-C---------cHHHHH------------HHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCC
Confidence                     111 0         012333            33332211   1123344566778899999999999999


Q ss_pred             CccchhHHHHHHHHHHHHHHHHhhcc-C-CCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHH
Q 004817          424 PSGLFLPIILMGSAYGRLLGMAMGSY-T-NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAK  501 (729)
Q Consensus       424 ~GG~f~Psl~iGa~~G~~~g~~~~~~-~-~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~  501 (729)
                      |||+|+|++++||++|+++|.+++.. + ..+|+.|+++||||+++|++|+|++++ +++||||++++++|+|+++++|+
T Consensus       341 pGGif~P~l~iGA~~G~~~g~~~~~~~p~~~~p~~~a~vGmaa~~~~v~~ap~t~v-i~~E~tg~~~~~lpl~ia~~~a~  419 (632)
T 3org_A          341 PAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTAGVTRALSCAV-IIFEVTGQIRHLVPVLISVLLAV  419 (632)
T ss_dssp             BCBCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSCCTTHHH-HHHHHTCCCSCSHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCChhHHHHHHHHHHHHH
Confidence            99999999999999999999987652 2 368899999999999999999999976 89999999999999999999999


Q ss_pred             HHHhhcCCchHHHHHHhcCCCCCCCCCCCcccccchhcccccCCCeeEecCcccHHHHHHHHh-cCCCCeeeeecCCCCC
Q 004817          502 TVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLR-NTTHNGFPVLDEGVVP  580 (729)
Q Consensus       502 ~v~~~~~~sly~~~l~~~G~~~~~~~~~~~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~-~~~~~~~PVvd~~~~~  580 (729)
                      .+++.+++++|+.+++.+++|++++...+..++++|+|+|++++++.+++++++++|+.+.|+ +++++.+||+|++   
T Consensus       420 ~v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~---  496 (632)
T 3org_A          420 IVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN---  496 (632)
T ss_dssp             HHHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT---
T ss_pred             HHHHHhCCCHHHHHHHhcCCCccccccccccccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC---
Confidence            999988889999999999999877665556688999999994449999999999999999999 8999999999987   


Q ss_pred             CCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcc-ccc------ccChh---hhhhc
Q 004817          581 PSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKI-EEV------AVTSE---EMEMY  650 (729)
Q Consensus       581 ~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~-~~~------~~~~~---~~~~~  650 (729)
                              ++++|+|+++|+.+.+.+.....+ .+.+..+........++.+..... ++.      ...++   ..+..
T Consensus       497 --------~~lvGiVt~~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  567 (632)
T 3org_A          497 --------GYLLGAISRKEIVDRLQHVLEDVP-EPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPT  567 (632)
T ss_dssp             --------CBBCCEESHHHHTTTTTTC-----------------------------------------------------
T ss_pred             --------CeEEEEEEHHHHHHHHHHHhhhcc-cccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccc
Confidence                    899999999999876544311110 000000000011111111110000 000      00000   00122


Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhh
Q 004817          651 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  715 (729)
Q Consensus       651 ~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~  715 (729)
                      .+++++|+++|.++++|+++.|+.++|.+++.+++||+|      +|+++|+||++|+++.+.++
T Consensus       568 ~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve------~G~lvGIVT~~Dll~~~~~~  626 (632)
T 3org_A          568 SSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE------RGKLVGIVEREDVAYGYSNS  626 (632)
T ss_dssp             ---CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE------TTEEEEEEEGGGTEECCCC-
T ss_pred             cccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE------CCEEEEEEehhhHHHHHhhh
Confidence            248899999999999999999999999999999999994      59999999999999876653

PyMOL of 3org

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A	Back alignment and structure

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...	Back alignment and structure

>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...	Back alignment and structure

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}	Back alignment and structure

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1	Back alignment and structure

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}	Back alignment and structure

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}	Back alignment and structure

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}	Back alignment and structure

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*	Back alignment and structure

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}	Back alignment and structure

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}	Back alignment and structure

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1	Back alignment and structure

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}	Back alignment and structure

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}	Back alignment and structure

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}	Back alignment and structure

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}	Back alignment and structure

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A	Back alignment and structure

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}	Back alignment and structure

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}	Back alignment and structure

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*	Back alignment and structure

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}	Back alignment and structure

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1	Back alignment and structure

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*	Back alignment and structure

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0	Back alignment and structure

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1	Back alignment and structure

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1	Back alignment and structure

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}	Back alignment and structure

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}	Back alignment and structure

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}	Back alignment and structure

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}	Back alignment and structure

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1	Back alignment and structure

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A	Back alignment and structure

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}	Back alignment and structure

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1	Back alignment and structure

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}	Back alignment and structure

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}	Back alignment and structure

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}	Back alignment and structure

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*	Back alignment and structure

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A	Back alignment and structure

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A	Back alignment and structure

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1	Back alignment and structure

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}	Back alignment and structure

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*	Back alignment and structure

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*	Back alignment and structure

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1	Back alignment and structure

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1	Back alignment and structure

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1	Back alignment and structure

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A	Back alignment and structure

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C	Back alignment and structure

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...	Back alignment and structure

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*	Back alignment and structure

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1	Back alignment and structure

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*	Back alignment and structure

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A	Back alignment and structure

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1	Back alignment and structure

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A	Back alignment and structure

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*	Back alignment and structure

>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...	Back alignment and structure

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1	Back alignment and structure

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*	Back alignment and structure

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*	Back alignment and structure

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C	Back alignment and structure

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*	Back alignment and structure

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*	Back alignment and structure

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1	Back alignment and structure

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*	Back alignment and structure

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1	Back alignment and structure

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}	Back alignment and structure

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*	Back alignment and structure

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*	Back alignment and structure

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1	Back alignment and structure

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}	Back alignment and structure

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}	Back alignment and structure

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1	Back alignment and structure

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}	Back alignment and structure

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}	Back alignment and structure

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}	Back alignment and structure

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1	Back alignment and structure

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*	Back alignment and structure

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A	Back alignment and structure

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*	Back alignment and structure

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*	Back alignment and structure

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}	Back alignment and structure

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}	Back alignment and structure

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1	Back alignment and structure

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}	Back alignment and structure

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1	Back alignment and structure

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}	Back alignment and structure

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}	Back alignment and structure

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1	Back alignment and structure

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}	Back alignment and structure

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1	Back alignment and structure

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*	Back alignment and structure

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}	Back alignment and structure

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0	Back alignment and structure

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}	Back alignment and structure

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}	Back alignment and structure

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}	Back alignment and structure

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A	Back alignment and structure

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}	Back alignment and structure

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}	Back alignment and structure

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1	Back alignment and structure

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A	Back alignment and structure

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}	Back alignment and structure

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}	Back alignment and structure

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1	Back alignment and structure

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}	Back alignment and structure

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}	Back alignment and structure

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}	Back alignment and structure

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A	Back alignment and structure

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1	Back alignment and structure

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*	Back alignment and structure

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}	Back alignment and structure

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*	Back alignment and structure

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1	Back alignment and structure

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A	Back alignment and structure

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*	Back alignment and structure

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A	Back alignment and structure

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*	Back alignment and structure

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*	Back alignment and structure

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1	Back alignment and structure

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1	Back alignment and structure

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1	Back alignment and structure

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}	Back alignment and structure

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		729
d1otsa_		444	f.20.1.1 (A:) Clc chloride channel {Escherichia co	2e-51
d2j9la1		169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	3e-07
d2ooxe1		179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-05
d2d4za3		160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	2e-05
d2yzqa1		156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	0.003

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

 Score =  183 bits (464), Expect = 2e-51
 Identities = 103/487 (21%), Positives = 186/487 (38%), Gaps = 76/487 (15%)

Query: 35  WSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVA 94
             +A +VG L GL A   +  V  +   ++ A+V   +    L    +      +L +  
Sbjct: 20  LFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSA--VLAMFG 77

Query: 95  AVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPL 154
             L   +AP A G GIPEI+  L        +    L VK  G +G +  G+ LG+EGP 
Sbjct: 78  YFLVRKYAPEAGGSGIPEIEGALEDQRPVRWW--RVLPVKFFGGLGTLGGGMVLGREGPT 135

Query: 155 VHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLF 214
           V IG  I  ++              +     D  R  L+  G+++G+ AAF AP+ G+LF
Sbjct: 136 VQIGGNIGRMVLD------------IFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILF 183

Query: 215 SLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRY 274
            +EE+   +R  L+        V++      +    + +  L   G L    ++ +    
Sbjct: 184 IIEEMRPQFRYTLISIKAVFIGVIMS---TIMYRIFNHEVALIDVGKLSDAPLNTLW--- 237

Query: 275 HVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQY 334
                    ++GII GI G ++N  +  +  L + ++       +L+  ++     +  +
Sbjct: 238 ------LYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGF 291

Query: 335 CLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSN 394
             P                                G                  N+    
Sbjct: 292 VAPAT---------------------------SGGGF-----------------NLIPIA 307

Query: 395 TPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TN 451
           T   F    ++  F+   I  L+ F    P G+F P++ +G+  G   GM         +
Sbjct: 308 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYH 367

Query: 452 IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNP-S 510
           ++ G +A+ G  +L+A S+R  ++  ++ LE+T+N  L+   +I  L A  +        
Sbjct: 368 LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKP 427

Query: 511 IYEIILE 517
           +Y  IL 
Sbjct: 428 LYSAILA 434

PyMOL of d1otsa_

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169	Back information, alignment and structure

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179	Back information, alignment and structure

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160	Back information, alignment and structure

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		729
d1otsa_		444	Clc chloride channel {Escherichia coli [TaxId: 562	100.0
d2ef7a1		127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.73
d2d4za3		160	Chloride channel protein, CBS tandem {Marbled elec	99.72
d2o16a3		139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.72
d1y5ha3		123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.72
d1pvma4		142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.72
d2yzqa2		122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.71
d2yzia1		132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.7
d2yzqa1		156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.69
d3ddja1		141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.69
d2ouxa2		127	Magnesium transporter MgtE {Enterococcus faecalis	99.68
d1yava3		132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.68
d2rc3a1		127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.67
d1vr9a3		121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.67
d1pbja3		120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.67
d2yvxa2		144	Magnesium transporter MgtE {Thermus thermophilus [	99.65
d3ddja2		135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.64
d2j9la1		169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.63
d2ooxe1		179	Uncharacterized protein C1556.08c {Schizosaccharom	99.63
d1zfja4		126	Type II inosine monophosphate dehydrogenase CBS do	99.62
d2riha1		131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.62
d2v8qe2		159	5'-AMP-activated protein kinase subunit gamma-1, A	99.6
d1o50a3		145	Hypothetical protein TM0935 {Thermotoga maritima [	99.58
d2ooxe2		153	Uncharacterized protein C1556.08c {Schizosaccharom	99.58
d2nyca1		140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.56
d2v8qe1		145	5'-AMP-activated protein kinase subunit gamma-1, A	99.56
d1jr1a4		120	Type II inosine monophosphate dehydrogenase CBS do	99.49
d1otsa_		444	Clc chloride channel {Escherichia coli [TaxId: 562	99.28
d2ouxa2		127	Magnesium transporter MgtE {Enterococcus faecalis	98.35
d2yzia1		132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.33
d2o16a3		139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.32
d2yzqa1		156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.32
d1pvma4		142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.22
d1y5ha3		123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.2
d1vr9a3		121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.17
d2yvxa2		144	Magnesium transporter MgtE {Thermus thermophilus [	98.11
d1pbja3		120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.11
d2yzqa2		122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.11
d1o50a3		145	Hypothetical protein TM0935 {Thermotoga maritima [	98.08
d2ef7a1		127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.07
d1yava3		132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.05
d2d4za3		160	Chloride channel protein, CBS tandem {Marbled elec	98.02
d3ddja2		135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.01
d1zfja4		126	Type II inosine monophosphate dehydrogenase CBS do	98.0
d3ddja1		141	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.99
d2riha1		131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	97.98
d2rc3a1		127	Uncharacterized protein NE2398 {Nitrosomonas europ	97.9
d2nyca1		140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.85
d1jr1a4		120	Type II inosine monophosphate dehydrogenase CBS do	97.79
d2j9la1		169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.75
d2ooxe2		153	Uncharacterized protein C1556.08c {Schizosaccharom	97.7
d2v8qe1		145	5'-AMP-activated protein kinase subunit gamma-1, A	97.56
d2v8qe2		159	5'-AMP-activated protein kinase subunit gamma-1, A	97.2
d2ooxe1		179	Uncharacterized protein C1556.08c {Schizosaccharom	96.95

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.4e-60  Score=523.02  Aligned_cols=411  Identities=25%  Similarity=0.415  Sum_probs=341.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 004817           34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI  113 (729)
Q Consensus        34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i  113 (729)
                      .+++++++|+++|+++.+|+..++++++++++...+..+  +++..+.++.+.+.+++.+++++.+++.|+.+|+|+||+
T Consensus        19 ~~~la~liGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~GsGipev   96 (444)
T d1otsa_          19 ILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTAD--NYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEI   96 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCCHHHH
Confidence            567899999999999999999999999998877553322  233334455566777888889999999999999999999


Q ss_pred             HHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHH
Q 004817          114 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI  193 (729)
Q Consensus       114 ~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li  193 (729)
                      +.++++.  ++.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++|    +++       . ++++++|.++
T Consensus        97 ~~~l~~~--~~~~~~r~~~~k~~~~~~sl~~G~s~G~EGP~v~iga~i~~~l~~----~~~-------~-~~~~~~r~l~  162 (444)
T d1otsa_          97 EGALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD----IFR-------L-KGDEARHTLL  162 (444)
T ss_dssp             HHHHTTC--SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH----HTT-------C-CSHHHHHHHH
T ss_pred             HHHHhCC--CCCccHHHHHHHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHH----HHh-------h-hhHHhhHHHH
Confidence            9999874  466789999999999999999999999999999999999999998    333       2 2456789999


Q ss_pred             HhhcccchhhhccCCcchhhhhhhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccCC
Q 004817          194 TCGSSSGVCAAFRAPVGGVLFSLEEVATWWRS--ALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVP  271 (729)
Q Consensus       194 ~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~--~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~  271 (729)
                      +||+|||++++||||++|++|++|++.++++.  +.+++.+.++++++.+.+.           .+++.+  .++++. .
T Consensus       163 ~~GaaAglaa~F~aPlaG~lFa~E~l~~~~~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~--~~~~~~-~  228 (444)
T d1otsa_         163 ATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRI-----------FNHEVA--LIDVGK-L  228 (444)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHH-----------HSCSCC--SSCCCC-C
T ss_pred             HHHHHHHHhhccCCchhhhhhhhHHHhhcchHHHHHHHHHHhhhHHHhhheee-----------ccCccc--cccccc-c
Confidence            99999999999999999999999999987654  3366666665555555443           233333  455553 4


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCC
Q 004817          272 VRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE  351 (729)
Q Consensus       272 ~~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~  351 (729)
                      ..+++.++++++++|++||++|.+|++.+.++.+++++.+.....++++.+.+++++++++.++.|++            
T Consensus       229 ~~~~~~~~~~~~~lgi~~g~~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~~p~~------------  296 (444)
T d1otsa_         229 SDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT------------  296 (444)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG------------
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHhccCccc------------
Confidence            67788999999999999999999999999999999988876656666777778888888888888887            


Q ss_pred             CCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHH
Q 004817          352 TCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI  431 (729)
Q Consensus       352 ~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Ps  431 (729)
                          .|.            +|+.+...+            +    ++.++..+++++++|+++|++|+++|+|||.|+|+
T Consensus       297 ----~g~------------G~~~~~~~~------------~----~~~~~~~l~~~~~~K~~~t~~t~~~G~~GG~f~P~  344 (444)
T d1otsa_         297 ----SGG------------GFNLIPIAT------------A----GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPM  344 (444)
T ss_dssp             ----SSC------------STTHHHHHH------------H----TCSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHH
T ss_pred             ----CCC------------chHHHHHHh------------c----CCcchHHHHHHHHHHHHHHHHHhhcCCCCCeehHH
Confidence                232            233333322            2    23456677788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc---CCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc-
Q 004817          432 ILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-  507 (729)
Q Consensus       432 l~iGa~~G~~~g~~~~~~---~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~~v~~~~-  507 (729)
                      +++||++|++++++++..   ...+|..|+++||+|++++++|+|+|++++++|+||++++++|+++++++|+.+++.+ 
T Consensus       345 l~iGa~~G~~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~~~Plta~vl~~Eltg~~~~~~p~~ia~~~a~~v~~~~~  424 (444)
T d1otsa_         345 LALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTG  424 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999988652   3578999999999999999999999999999999999999999999999999999998 


Q ss_pred             CCchHHHHHHh
Q 004817          508 NPSIYEIILEL  518 (729)
Q Consensus       508 ~~sly~~~l~~  518 (729)
                      ++|+||.++++
T Consensus       425 ~~siY~~~l~~  435 (444)
T d1otsa_         425 GKPLYSAILAR  435 (444)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCChHHHHHHH
Confidence            78999999875

PyMOL of d1otsa_

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}	Back information, alignment and structure

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}	Back information, alignment and structure

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}	Back information, alignment and structure

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}	Back information, alignment and structure

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}	Back information, alignment and structure

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}	Back information, alignment and structure

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}	Back information, alignment and structure

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}	Back information, alignment and structure

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure