Citrus Sinensis ID: 004823

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------73

MLKLLQHQSSCLDILQMYVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV

cHHHHHHccccccccccccccccEEEEEEEcccccccccccEEEEEEccccEEEEEEEEccEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEcccccccEEEEcccEEEEEEEcccccccccccccccccccEEEEEEEEEEEccccEEEEEcccEEEEEcccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEEccccEEEEcccccccccEEccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccEEcccHHHHHHHHcEEEEEcccEEEEEccccccccccEEEEEEEEEccEEEEEEEEccEEEEEEEEEcccccccccEEEEEEccEEEEEEcccccEEEEccccccEEEEcccc

cHHHHHHHHHHcccccccccccccEEEEEcccccccccccccEEEEccccEEEEEEEEEccEEEEEEEEEEccccEEEEEEEEcccccEEEEEEEcccccccEEEEcccEEEEEEEccccccccccccccccccEEEEEEEEEEEEccccEEEEEcccEEEEEcccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccEEEEcccccHHccccccccccccccccHHHHHHHcccccHHHHHHHHHHccEEEEEccccccccccccccEccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEccccHHHcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHcccccEEEccccccHHcccccEEEEEEcccEEEEEEEEccEEEEEEEEEccccccEEEEEEEEEccEEEEEEcccccEEEEccccEEEcccEEEc

MLKLLQHQSSCLDILQMYVYQLLGDielefddshLKYAEETYRRELDLNTATARVKYSvgnveftrehfssnpdqVIVTKIsgsesgslsfnvsldslldnhsyvngnnqiimegrcpgkrippkananddpkgiqFSAILEIkisddrgtisaledkklkvegSDWAVLLLVASssfdgpfinpsdskkdptsESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSiqlsrspkdivtdtcseenidtvpsaervksfqtdedpsLVELLFQFGRYLLisssrpgtqvanlqgiwnedlsptwdsaphvninlemnywqslpcnlsecqepLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIeghdgyletnpstspehefiapdgklacvsysstMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKslprlrptkiaedgsimewaqdfkdpevhhrhlshlfglfpghtitieknpDLCKAAEKTLQKrgeegpgwsiTWKTALWARLHDQEHAYRMVKRLfnlvdpehekhfegglysnlfaahppfqidanfGFTAAVAEMLVQSTLNdlyllpalpwdkwssgcvkglkarggetvsicwkdgdlhevgiysnysnndhdsfktLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV

MLKLLQHQSSCLDILQMYVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEftrehfssnpdqVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASssfdgpfinpsdskkdptsESMSALQSIRNLSYSDLYTRHLDDYQKLFHrvsiqlsrspkdivtdtcseenidtvpsaervksfqtdedPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKvlkslprlrptkiaedgsIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLqkrgeegpgwsiTWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKiytfnrqlkctnlhqsiv

********SSCLDILQMYVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFS***DQVIVTKI*******LSFNVSLDSLLDNHSYVNGNNQIIMEGR******************IQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSF*************************RNLSYSDLYTRHLDDYQKLFHRVSIQLS*****IV***************************SLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLET********EFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAE*********GPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNL*****

MLKLL****S****LQMYVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKD****TCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV

MLKLLQHQSSCLDILQMYVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPS**************QSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV

MLKLLQHQSSCLDILQMYVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRS***************TVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		728	2.2.26 [Sep-21-2011]
Q8L7W8		843	Alpha-L-fucosidase 2 OS=A	yes	no	0.946	0.817	0.642	0.0
Q5AU81		809	Alpha-fucosidase A OS=Eme	no	no	0.848	0.763	0.306	5e-78
A2R797		793	Probable alpha-fucosidase	yes	no	0.835	0.766	0.298	4e-70
Q2USL3		723	Probable alpha-fucosidase	no	no	0.734	0.739	0.267	3e-47

>sp\|Q8L7W8\|FUCO2_ARATH Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=At4g34260 PE=2 SV=1	Back alignment and function desciption

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/711 (64%), Positives = 556/711 (78%), Gaps = 22/711 (3%)

Query: 19  VYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIV 78
           VYQ++GD+ LEFD SH KY + +YRRELDL TA A+V YSVG V+F+RE F+SNPDQVI+
Sbjct: 140 VYQIVGDLNLEFDSSHRKYTQASYRRELDLETAVAKVSYSVGAVDFSREFFASNPDQVII 199

Query: 79  TKISGSESGSLSFNVSLDSLLDNHSYVNGN-NQIIMEGRCPGKRIP----PKANAN---- 129
            KI  S+ GSLSF VS DS L +HS  N   NQI+M G C  KR+P       NA     
Sbjct: 200 AKIYASKPGSLSFKVSFDSELHHHSETNPKANQILMRGSCRPKRLPVNLKKSINATNIPY 259

Query: 130 DDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSK 189
           DD KG+QF++ILE+++S+  G++S+L  KKL VE +DWAVLLL ASS+FDGPF  P DSK
Sbjct: 260 DDHKGLQFASILEVRVSNG-GSVSSLGGKKLSVEKADWAVLLLAASSNFDGPFTMPVDSK 318

Query: 190 KDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDT 249
            DP  E ++ + S++  SYSDLY RHL DYQKLF+RVS+ LS S       + +E     
Sbjct: 319 IDPAKECVNRISSVQKYSYSDLYARHLGDYQKLFNRVSLHLSGS-------STNETVQQA 371

Query: 250 VPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPH 309
             +AERV+SF+TD+DPSLVELLFQ+GRYLLISSSRPGTQVANLQGIWN D+ P WD APH
Sbjct: 372 TSTAERVRSFKTDQDPSLVELLFQYGRYLLISSSRPGTQVANLQGIWNRDIQPPWDGAPH 431

Query: 310 VNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKS 369
           +NINL+MNYW SLP N+ ECQEPLFD+++ L+ING KTAQVNY ASGWV H  +DIWAK+
Sbjct: 432 LNINLQMNYWHSLPGNIRECQEPLFDYMSALAINGRKTAQVNYGASGWVAHQVSDIWAKT 491

Query: 370 SADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHD 429
           S DRG+ VWALWPMGGAWLCTH WEHY YTMD++FL+K+ YPLLEGC SFLLDWLI+G D
Sbjct: 492 SPDRGEAVWALWPMGGAWLCTHAWEHYTYTMDKEFLKKKGYPLLEGCTSFLLDWLIKGKD 551

Query: 430 GYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEK 489
           G+L+TNPSTSPEH F AP GK A VSYSSTMD+AII+EVF+ I+SA+E+L K  D L+ K
Sbjct: 552 GFLQTNPSTSPEHMFTAPIGKPASVSYSSTMDIAIIKEVFADIVSASEILGKTNDTLIGK 611

Query: 490 VLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAA 549
           V+ +  +L PT+I++DGSI EWA+DF+DPEVHHRH+SHLFGLFPGHTIT+EK+P+L KA 
Sbjct: 612 VIAAQAKLPPTRISKDGSIREWAEDFEDPEVHHRHVSHLFGLFPGHTITVEKSPELAKAV 671

Query: 550 EKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLF 609
           E TL+KRGEEGPGWS TWK ALWARLH+ EHAYRMV  +F+LVDP +E+++EGGLYSN+F
Sbjct: 672 EATLKKRGEEGPGWSTTWKAALWARLHNSEHAYRMVTHIFDLVDPLNERNYEGGLYSNMF 731

Query: 610 AAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSIC 669
            AHPPFQIDANFGF AAVAEMLVQST  DLYLLPALP DKW +G V GL+ARGG TVSI 
Sbjct: 732 TAHPPFQIDANFGFAAAVAEMLVQSTTKDLYLLPALPADKWPNGIVNGLRARGGVTVSIK 791

Query: 670 WKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKC 720
           W +G+L E G++S     +      + YRG S    L  GK++TF++ L+C
Sbjct: 792 WMEGNLVEFGLWS-----EQIVSTRIVYRGISAAAELLPGKVFTFDKDLRC 837

Hydrolyzes alpha-1,2-linked fucose. Also active on fucosylated xyloglucan oligosaccharides.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 1

>sp\|Q5AU81\|AFCA_EMENI Alpha-fucosidase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=afcA PE=2 SV=1	Back alignment and function description

>sp\|A2R797\|AFCA_ASPNC Probable alpha-fucosidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=afcA PE=3 SV=1	Back alignment and function description

>sp\|Q2USL3\|AFCA_ASPOR Probable alpha-fucosidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=afcA PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		728
224103693		836	predicted protein [Populus trichocarpa]	0.960	0.836	0.737	0.0
224103687		803	predicted protein [Populus trichocarpa]	0.949	0.860	0.743	0.0
224056204		808	predicted protein [Populus trichocarpa]	0.961	0.866	0.737	0.0
255573091		840	conserved hypothetical protein [Ricinus	0.912	0.790	0.761	0.0
359475494		817	PREDICTED: alpha-L-fucosidase 2-like [Vi	0.951	0.848	0.732	0.0
255573093		849	conserved hypothetical protein [Ricinus	0.964	0.826	0.703	0.0
356574288		876	PREDICTED: alpha-L-fucosidase 2-like [Gl	0.964	0.801	0.680	0.0
224056206		843	predicted protein [Populus trichocarpa]	0.958	0.827	0.697	0.0
356536151		877	PREDICTED: alpha-L-fucosidase 2-like [Gl	0.964	0.800	0.673	0.0
356575686		874	PREDICTED: alpha-L-fucosidase 2-like [Gl	0.964	0.803	0.668	0.0

>gi\|224103693\|ref\|XP_002313157.1\| predicted protein [Populus trichocarpa] gi\|222849565\|gb\|EEE87112.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1114 bits (2882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/716 (73%), Positives = 608/716 (84%), Gaps = 17/716 (2%)

Query: 19  VYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIV 78
           VYQLLGDI+LEFD  +L  AEETY RELDL+TATARVKYSVG+VEFTREHF+S PDQVIV
Sbjct: 119 VYQLLGDIKLEFD-GYLMCAEETYYRELDLDTATARVKYSVGDVEFTREHFASYPDQVIV 177

Query: 79  TKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFS 138
           TKI+GS+ GS+SF VSLDS LD+H Y+   +QI+MEGRCPGKRIPPK  ANDDPKGI F+
Sbjct: 178 TKIAGSKEGSVSFTVSLDSKLDHHCYITDESQIVMEGRCPGKRIPPKVKANDDPKGILFA 237

Query: 139 AILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMS 198
           A+L ++ISD  G +S L+D +LKVEG++W VL +VASSSF+GPF  PS+S+KDP S S+S
Sbjct: 238 AVLGLQISDGAGLMSVLDDGRLKVEGANWVVLHMVASSSFEGPFTKPSESEKDPASVSLS 297

Query: 199 ALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDT-------------CSEE 245
           AL+SI+N SYS+LY+RHLDDYQ LFHRVS+QL +     + D              C E 
Sbjct: 298 ALKSIKNQSYSELYSRHLDDYQNLFHRVSLQLCKGSDRNIGDRSLEIKNLMPSGKRCVEG 357

Query: 246 NIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWD 305
           N D VP+ +R++SFQ+DEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWN+DL P WD
Sbjct: 358 NKDVVPTVDRIRSFQSDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNKDLEPKWD 417

Query: 306 SAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDI 365
           SAPH+NINLEMNYW SLPCNLSECQEPLF+F+  LSING KTAQVNY  SGWV+HHK+DI
Sbjct: 418 SAPHLNINLEMNYWPSLPCNLSECQEPLFEFIKSLSINGCKTAQVNYKTSGWVVHHKSDI 477

Query: 366 WAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI 425
           WAK SAD+G+VVWA+WPMGGAWLCTHLWEHY+YTMD DFL  +AYPLLEGCASFLLDWLI
Sbjct: 478 WAKPSADKGEVVWAIWPMGGAWLCTHLWEHYSYTMDEDFLRNKAYPLLEGCASFLLDWLI 537

Query: 426 EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDA 485
           EGH GYLETNPSTSPEH FIAPDGK A VSYSSTMDMA+I+EVFSAIISA+EVL +NEDA
Sbjct: 538 EGHGGYLETNPSTSPEHMFIAPDGKSASVSYSSTMDMALIKEVFSAIISASEVLGRNEDA 597

Query: 486 LVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDL 545
            V+KV K+ PRL PTKI E+GSIMEWAQDFKDP+VHHRHLSHLFGLFPGH+ITI+KNP+L
Sbjct: 598 FVQKVHKAQPRLYPTKIDEEGSIMEWAQDFKDPDVHHRHLSHLFGLFPGHSITIDKNPEL 657

Query: 546 CKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLY 605
           C+AAE +L KRGE+GPGWS TWK ALWA LH+ EH+YRMVK+L  LVDP+HE  FEGGLY
Sbjct: 658 CEAAENSLYKRGEDGPGWSTTWKIALWAHLHNSEHSYRMVKQLIKLVDPDHEVAFEGGLY 717

Query: 606 SNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGET 665
           SNLFAAHPPFQIDANFGFTA V+EMLVQS++ DLYLLPALP DKW++GCVKGLKARGG T
Sbjct: 718 SNLFAAHPPFQIDANFGFTAGVSEMLVQSSIKDLYLLPALPRDKWANGCVKGLKARGGLT 777

Query: 666 VSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCT 721
           VSICWK+GDLHEVG+   +  +   S + +HY GT+V VNLS  KIYTFN QL+C 
Sbjct: 778 VSICWKEGDLHEVGV---WLKDGSSSLQRIHYGGTTVTVNLSCRKIYTFNTQLECV 830

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224103687\|ref\|XP_002313154.1\| predicted protein [Populus trichocarpa] gi\|222849562\|gb\|EEE87109.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224056204\|ref\|XP_002298754.1\| predicted protein [Populus trichocarpa] gi\|222846012\|gb\|EEE83559.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255573091\|ref\|XP_002527475.1\| conserved hypothetical protein [Ricinus communis] gi\|223533115\|gb\|EEF34873.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|359475494\|ref\|XP_002270199.2\| PREDICTED: alpha-L-fucosidase 2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255573093\|ref\|XP_002527476.1\| conserved hypothetical protein [Ricinus communis] gi\|223533116\|gb\|EEF34874.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356574288\|ref\|XP_003555281.1\| PREDICTED: alpha-L-fucosidase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|224056206\|ref\|XP_002298755.1\| predicted protein [Populus trichocarpa] gi\|222846013\|gb\|EEE83560.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356536151\|ref\|XP_003536603.1\| PREDICTED: alpha-L-fucosidase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356575686\|ref\|XP_003555969.1\| PREDICTED: alpha-L-fucosidase 2-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		728
TAIR\|locus:2116154		843	FUC95A [Arabidopsis thaliana (	0.946	0.817	0.642	3e-252
ASPGD\|ASPL0000035173		757	afcC [Emericella nidulans (tax	0.644	0.619	0.389	5.9e-89
ASPGD\|ASPL0000008702		831	afcB [Emericella nidulans (tax	0.851	0.746	0.344	4.1e-81
UNIPROTKB\|G4NET6		827	MGG_00050 "Uncharacterized pro	0.631	0.556	0.369	1.4e-80
ASPGD\|ASPL0000014922		809	afcA [Emericella nidulans (tax	0.861	0.775	0.316	1.1e-76
UNIPROTKB\|Q5AU81		809	afcA "Alpha-fucosidase A" [Asp	0.861	0.775	0.316	1.1e-76

TAIR\|locus:2116154 FUC95A [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2429 (860.1 bits), Expect = 3.0e-252, P = 3.0e-252
 Identities = 457/711 (64%), Positives = 558/711 (78%)

Query:    19 VYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIV 78
             VYQ++GD+ LEFD SH KY + +YRRELDL TA A+V YSVG V+F+RE F+SNPDQVI+
Sbjct:   140 VYQIVGDLNLEFDSSHRKYTQASYRRELDLETAVAKVSYSVGAVDFSREFFASNPDQVII 199

Query:    79 TKISGSESGSLSFNVSLDSLLDNHSYVNGN-NQIIMEGRCPGKRIPP--KANAN------ 129
              KI  S+ GSLSF VS DS L +HS  N   NQI+M G C  KR+P   K + N      
Sbjct:   200 AKIYASKPGSLSFKVSFDSELHHHSETNPKANQILMRGSCRPKRLPVNLKKSINATNIPY 259

Query:   130 DDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSK 189
             DD KG+QF++ILE+++S+  G++S+L  KKL VE +DWAVLLL ASS+FDGPF  P DSK
Sbjct:   260 DDHKGLQFASILEVRVSNG-GSVSSLGGKKLSVEKADWAVLLLAASSNFDGPFTMPVDSK 318

Query:   190 KDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDT 249
              DP  E ++ + S++  SYSDLY RHL DYQKLF+RVS+ LS S  +   +T  +     
Sbjct:   319 IDPAKECVNRISSVQKYSYSDLYARHLGDYQKLFNRVSLHLSGSSTN---ETVQQ----A 371

Query:   250 VPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPH 309
               +AERV+SF+TD+DPSLVELLFQ+GRYLLISSSRPGTQVANLQGIWN D+ P WD APH
Sbjct:   372 TSTAERVRSFKTDQDPSLVELLFQYGRYLLISSSRPGTQVANLQGIWNRDIQPPWDGAPH 431

Query:   310 VNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKS 369
             +NINL+MNYW SLP N+ ECQEPLFD+++ L+ING KTAQVNY ASGWV H  +DIWAK+
Sbjct:   432 LNINLQMNYWHSLPGNIRECQEPLFDYMSALAINGRKTAQVNYGASGWVAHQVSDIWAKT 491

Query:   370 SADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHD 429
             S DRG+ VWALWPMGGAWLCTH WEHY YTMD++FL+K+ YPLLEGC SFLLDWLI+G D
Sbjct:   492 SPDRGEAVWALWPMGGAWLCTHAWEHYTYTMDKEFLKKKGYPLLEGCTSFLLDWLIKGKD 551

Query:   430 GYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEK 489
             G+L+TNPSTSPEH F AP GK A VSYSSTMD+AII+EVF+ I+SA+E+L K  D L+ K
Sbjct:   552 GFLQTNPSTSPEHMFTAPIGKPASVSYSSTMDIAIIKEVFADIVSASEILGKTNDTLIGK 611

Query:   490 VLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAA 549
             V+ +  +L PT+I++DGSI EWA+DF+DPEVHHRH+SHLFGLFPGHTIT+EK+P+L KA 
Sbjct:   612 VIAAQAKLPPTRISKDGSIREWAEDFEDPEVHHRHVSHLFGLFPGHTITVEKSPELAKAV 671

Query:   550 EKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLF 609
             E TL+KRGEEGPGWS TWK ALWARLH+ EHAYRMV  +F+LVDP +E+++EGGLYSN+F
Sbjct:   672 EATLKKRGEEGPGWSTTWKAALWARLHNSEHAYRMVTHIFDLVDPLNERNYEGGLYSNMF 731

Query:   610 AAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSIC 669
              AHPPFQIDANFGF AAVAEMLVQST  DLYLLPALP DKW +G V GL+ARGG TVSI 
Sbjct:   732 TAHPPFQIDANFGFAAAVAEMLVQSTTKDLYLLPALPADKWPNGIVNGLRARGGVTVSIK 791

Query:   670 WKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKC 720
             W +G+L E G++S    +       + YRG S    L  GK++TF++ L+C
Sbjct:   792 WMEGNLVEFGLWSEQIVSTR-----IVYRGISAAAELLPGKVFTFDKDLRC 837

GO:0003824 "catalytic activity" evidence=IEA

GO:0004560 "alpha-L-fucosidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0047513 "1,2-alpha-L-fucosidase activity" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

ASPGD\|ASPL0000035173 afcC [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000008702 afcB [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NET6 MGG_00050 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000014922 afcA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AU81 afcA "Alpha-fucosidase A" [Aspergillus nidulans FGSC A4 (taxid:227321)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7W8	FUCO2_ARATH	3, ., 2, ., 1, ., 5, 1	0.6427	0.9464	0.8173	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		728
PRK13807		756	maltose phosphorylase; Provisional	100.0
COG1554		772	ATH1 Trehalose and maltose hydrolases (possible ph	100.0
PF03632		370	Glyco_hydro_65m: Glycosyl hydrolase family 65 cent	100.0
KOG4125		682	consensus Acid trehalase [Carbohydrate transport a	99.95
PF14498		236	Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-t	99.93
TIGR01577		616	oligosac_amyl oligosaccharide amylase. The name of	98.49
PF10222		604	DUF2152: Uncharacterized conserved protein (DUF215	98.15
PF05592		509	Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int	97.85
COG3459		1056	Cellobiose phosphorylase [Carbohydrate transport a	97.44
PF04685		365	DUF608: Protein of unknown function, DUF608; Inter	97.1
TIGR01535		648	glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc	96.86
PF06202		370	GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR	96.78
COG3387		612	SGA1 Glucoamylase and related glycosyl hydrolases	96.73
COG3408		641	GDB1 Glycogen debranching enzyme [Carbohydrate tra	96.68
TIGR01561		575	gde_arch glycogen debranching enzyme, archaeal typ	96.04
PF03633		54	Glyco_hydro_65C: Glycosyl hydrolase family 65, C-t	96.01
PF03636		255	Glyco_hydro_65N: Glycosyl hydrolase family 65, N-t	95.53
PRK10137		786	alpha-glucosidase; Provisional	94.95
PRK13271		569	treA trehalase; Provisional	91.86
COG4354		721	Predicted bile acid beta-glucosidase [Carbohydrate	90.05
PRK13272		542	treA trehalase; Provisional	85.92

>PRK13807 maltose phosphorylase; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.2e-54  Score=508.57  Aligned_cols=568  Identities=16%  Similarity=0.162  Sum_probs=389.7

Q ss_pred             CCCCCCCeEEEEeccccEEEEEEE--ECC--EEEEEEEEEecCCC-EEEEEE--EcC-CCCceEEEEEeccCCCCC-e--
Q 004823           35 LKYAEETYRRELDLNTATARVKYS--VGN--VEFTREHFSSNPDQ-VIVTKI--SGS-ESGSLSFNVSLDSLLDNH-S--  103 (728)
Q Consensus        35 ~~~~~~~Y~R~LDl~~gv~~v~~~--~~g--~~~~re~f~S~pd~-viv~~i--~~~-~~~~l~~~~~l~~~~~~~-~--  103 (728)
                      ..+.  +|+|+|||.+|+.+.++.  .+|  ++++-+.|||..+. ++++++  +.. ..+.+.+.-.++...... .  
T Consensus       104 ~~i~--~~~r~LDl~~G~l~r~~~~~~~G~~~~i~~~Rfvs~~~~~l~~~~~~i~~~n~~~~i~i~s~idg~v~n~~~~~  181 (756)
T PRK13807        104 CEVS--DFELELDMKEGVLTRSFTVLKNGKEVRVEAERFLSIAQKELAVIKYSVTSLNGEAKITFDSYLDGDVKNEDSNY  181 (756)
T ss_pred             Cchh--eeEEEEEccceEEEEEEEEEECCeEEEEEEEEEecCCCCEEEEEEEEEEEcCCcEEEEEEecccCccccCCcch
Confidence            4566  899999999999986654  345  56778899999874 666555  443 245666665554432110 0  


Q ss_pred             ------eee---cCCeEEEEEecCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCce----EEEecCC------eEEEeC
Q 004823          104 ------YVN---GNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGT----ISALEDK------KLKVEG  164 (728)
Q Consensus       104 ------~~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~----~~~~~~~------~l~v~~  164 (728)
                            ...   ..+...+..+....          .......+..+.+. .+.++.    +.. ...      .+.++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~T~~s----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~i~~~~~~~l~~  249 (756)
T PRK13807        182 DEKFWQVLEKGADATRAFIVTKTKPN----------PFGVPQFTVAAKMS-NRTNGKVVPGVET-KEKYVENSFTADVKA  249 (756)
T ss_pred             hhhcceeecccccCCCcEEEEEEecC----------CCcceeEEEEEeee-ccccccccceeec-cCcEEEEEEEEEEcC
Confidence                  000   11111111111000          00011122221111 110011    111 112      234567


Q ss_pred             CcEEEE--EEEEeecCCCCCCCCCCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcceeEEecCCCCCcccccC
Q 004823          165 SDWAVL--LLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTC  242 (728)
Q Consensus       165 a~~v~l--~~~~~T~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~y~~l~~~H~~~w~~~w~r~~l~l~~~~~~~~~~~~  242 (728)
                      .++++|  ++++.|+.+.  +     ..++.+.|.+.+..+.+.+|++|+++|++.|+++|++++|+|+|++.       
T Consensus       250 g~~~~leK~v~v~ts~d~--~-----~~~~~~~a~~~~~~a~~~g~d~l~~~h~~~w~~~W~~~di~I~gd~~-------  315 (756)
T PRK13807        250 GETVTLEKRVIVVTSRDY--E-----ESELLKAAEDLLNKAAEKGFEELLAAHTAAWAKRWEKSDVVIEGDDA-------  315 (756)
T ss_pred             CCEEEEEEEEEEEECCCC--C-----chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHCCeEEcCCHH-------
Confidence            777766  6777777552  1     34456778888888888899999999999999999999999998653       


Q ss_pred             cccccCCCChHHHHhhccCCCChHHHHHHHHHHHHHHHhcC--CCC---CCCCCCccccCCCCCCCCCCCcccccccccc
Q 004823          243 SEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSS--RPG---TQVANLQGIWNEDLSPTWDSAPHVNINLEMN  317 (728)
Q Consensus       243 ~~~~~~~~~t~~rl~~~~~~~d~~L~~l~f~~grYllisss--R~g---~~p~~LqG~W~~~~~~~W~g~y~~niN~qm~  317 (728)
                                .|+..               +|..|+|.++.  +.+   ..|.||+|.       .+.|+  ++||+|++
T Consensus       316 ----------~q~al---------------r~~~fhL~~s~~~~~~~~~i~a~GLsge-------~Y~Gh--~FWDtE~f  361 (756)
T PRK13807        316 ----------AQQGI---------------RFNIFQLFSTYYGEDARLNIGPKGFTGE-------KYGGA--TYWDTEAY  361 (756)
T ss_pred             ----------HHHHH---------------HHHHHHHHhccCCCCCCCCcCCCCCCcC-------CcCCe--eeeccchh
Confidence                      45444               35556666553  222   245577773       68886  55779999


Q ss_pred             cccc-cCCCchhhhHHHHHHHHHhhHHHHHHHHHHcCCCceEEcccCCcCCCCCCCCCCccccc---CccCHHHHHHHHH
Q 004823          318 YWQS-LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWAL---WPMGGAWLCTHLW  393 (728)
Q Consensus       318 ywp~-~~~nlpE~~~pll~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~---w~~~~awla~~~w  393 (728)
                      ..|+ +....||+++.||+||++.|+.||++|++ +|++||+|||.+. -|..    .++.|..   --.-+++||+++|
T Consensus       362 ~lP~~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A~~-~g~~GA~yPW~s~-~G~E----~~~~w~~~~~e~HI~adIaya~~  435 (756)
T PRK13807        362 CVPFYLATADPEVTRNLLKYRYNQLPGAKENAKK-QGLKGALYPMVTF-NGIE----CHNEWEITFEEIHRNGAIAYAIY  435 (756)
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhHHHHHHHHHH-cCCCccccceEcC-CCCc----CCCCcCCCceeEechHHHHHHHH
Confidence            9998 66899999999999999999999999999 7999999998864 2311    1122211   0124799999999


Q ss_pred             HHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceecC-CCeEEECCCCCC-CCCcCCCCCCccccccCcHHHHHHHHHHHHH
Q 004823          394 EHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSA  471 (728)
Q Consensus       394 ~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r~l~~~  471 (728)
                      +||+.|||.+||++.|+|||.|+||||.+++.+++ +|+|+|..+++| |++         ..++||+|||.|++++|+.
T Consensus       436 ~Y~~~TgD~~fl~~~G~e~l~etArfw~s~~~~~~~~~~y~I~~V~GPDEY~---------~~vdNNayTN~ma~~~l~~  506 (756)
T PRK13807        436 NYTNYTGDESYLKEEGLEVLVEIARFWADRVHFSKRKNKYMIHGVTGPNEYE---------NNVNNNWYTNYIAAWTLEY  506 (756)
T ss_pred             HHHHHhCCHHHHHhcCHHHHHHHHHHHHHheEEeCCCCeEEECCcccccccC---------CCCCCchhHHHHHHHHHHH
Confidence            99999999999999999999999999999999865 889999999999 776         3589999999999999999


Q ss_pred             HHHHHHH--------hCCCchHHHHHHHHHcCCCC-CCCCCCCC---------ceeeecccCCCC----cCCCCccc---
Q 004823          472 IISAAEV--------LEKNEDALVEKVLKSLPRLR-PTKIAEDG---------SIMEWAQDFKDP----EVHHRHLS---  526 (728)
Q Consensus       472 ~~~a~~~--------L~~~~~~~~~~w~~~~~~L~-p~~i~~~G---------~l~ew~~~~~~~----~~~hrh~s---  526 (728)
                      ++++++.        |+++ +++.++|++++++|. |+.- ..|         .+++|+.+-.+.    ...|.|..   
T Consensus       507 A~~~~~~l~~~~~~~l~~~-~~e~~~w~~ia~~~~lp~~~-~~gi~~q~dgy~~l~~~d~~~~~~~~~~~~~~~~~~~i~  584 (756)
T PRK13807        507 TLENLDKVKKEAPARLNVT-EEELAKWQDIVDKMYLPYDE-ELGIFVQHDGFLDKDLRPVSDLPPDQRPINQNWSWDRIL  584 (756)
T ss_pred             HHHHHHHhchhhHHHhcCC-HHHHHHHHHHHhCeEecccC-CCCEEEccCCccccccCchhhcccccCCcccccCHHHHh
Confidence            9998864        4555 667889999999999 6642 223         233443211111    11112211   


Q ss_pred             ---------cccccCCCCccCCCCCHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhccCCccc
Q 004823          527 ---------HLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHE  597 (728)
Q Consensus       527 ---------hL~~l~P~~~i~~~~~p~l~~aa~~tl~~r~~~~sgws~~~~~~~aARLgd~e~A~~~l~~~~~~~~~~~~  597 (728)
                               -++.+||+..   .-+++.++.....+++|+.|+|++|++++++++|++|+.++|+++|++.+. +|+++.
T Consensus       585 ~~qviKQADvvll~yll~~---~f~~~~~~~n~~yYe~rT~HdSsLS~~i~ai~aa~~g~~~~A~~~f~~a~~-~Dl~~~  660 (756)
T PRK13807        585 RSPFIKQADVLQGIYFFED---RFTKEEKRRNFDFYEPLTVHESSLSPCVHSILAAELGKEDKAVELYLRTAR-LDLDNY  660 (756)
T ss_pred             cccEecHHHHHHHhccCCC---CCCHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHH-hhhhhc
Confidence                     1345566542   245677778888889999999999999999999999999999999999988 566543


Q ss_pred             c-cCCCCcccccccCCCCccccchhhHHHHHHHHhhhccC------CeeEeCCCCCcccccCceeeceEeecc-EEEEEE
Q 004823          598 K-HFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTL------NDLYLLPALPWDKWSSGCVKGLKARGG-ETVSIC  669 (728)
Q Consensus       598 ~-~~~~g~~~nl~~~h~pfqidgn~g~~agi~emLlqs~~------g~i~llPalP~~~W~~gs~~gL~arG~-~~V~~~  669 (728)
                      + +..+|               .+.++++|.+.++++...      +.|+|.|.|| +.|+..+|+ ++.||. +.|.+ 
T Consensus       661 ~~~t~~G---------------iH~~~~gG~w~~vv~Gf~Glr~~~~~L~~~P~LP-~~w~~l~f~-~~~rG~~l~v~i-  722 (756)
T PRK13807        661 NNDTEDG---------------LHITSMAGSWLAIVQGFAGMRVRDGQLSFAPFLP-KEWTSYSFK-INFRGRLLKVKV-  722 (756)
T ss_pred             cCCCCcc---------------hhhhcchHHHHHHHheecceEecCCeEEEeCCCC-CccceeEEE-EEECCeEEEEEE-
Confidence            1 11111               145777888888877554      5799999999 999999998 999998 45555 


Q ss_pred             EeCCeEEEEEEEeCCCCCcccceeeeeecCeEEEEEccCCcEEEE
Q 004823          670 WKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTF  714 (728)
Q Consensus       670 w~~g~l~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i  714 (728)
                       ...+   ++|+...|..++   +.+.  +  ..+.+.+|++.++
T Consensus       723 -~~~~---~~i~~~~g~~l~---i~v~--g--~~~~l~~g~~~~~  756 (756)
T PRK13807        723 -DKQE---VTIELLSGEPLT---IEVY--G--KKVELKKGVTVTV  756 (756)
T ss_pred             -ECCE---EEEEEcCCCcEE---EEEC--C--EEEEEcCCcEeeC
Confidence             4444   355555555566   4443  3  2355568887764

>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3	Back alignment and domain information

>KOG4125 consensus Acid trehalase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF14498 Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-terminal domain; PDB: 2EAE_A 2EAB_B 2EAC_A 2EAD_B 2RDY_A	Back alignment and domain information

>TIGR01577 oligosac_amyl oligosaccharide amylase	Back alignment and domain information

>PF10222 DUF2152: Uncharacterized conserved protein (DUF2152); InterPro: IPR018795 This entry includes mainly uncharacterised proteins, though some are described as belonging to the glycoside hydrolase family 65	Back alignment and domain information

>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes	Back alignment and domain information

>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []	Back alignment and domain information

>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase	Back alignment and domain information

>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT	Back alignment and domain information

>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative	Back alignment and domain information

>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF03636 Glyco_hydro_65N: Glycosyl hydrolase family 65, N-terminal domain ; InterPro: IPR005196 O-Glycosyl hydrolases 3	Back alignment and domain information

>PRK10137 alpha-glucosidase; Provisional	Back alignment and domain information

>PRK13271 treA trehalase; Provisional	Back alignment and domain information

>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK13272 treA trehalase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		728
2rdy_A		803	Crystal Structure Of A Putative Glycoside Hydrolase		1e-148
2eab_A		899	Crystal Structure Of 1,2-A-L-Fucosidase From Bifido		2e-72
2ead_A		899	Crystal Structure Of 1,2-A-L-Fucosidase From Bifido		2e-71
2eae_A		898	Crystal Structure Of 1,2-A-L-Fucosidase From Bifido		3e-71

>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family Protein From Bacillus Halodurans Length = 803

Back alignment and structure

Iteration: 1

Score = 521 bits (1341), Expect = e-148, Method: Compositional matrix adjust. Identities = 286/678 (42%), Positives = 389/678 (57%), Gaps = 38/678 (5%) Query: 20 YQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVT 79 Y GD+ + D H + Y RELDL+T V Y++G V++TRE F + PD+ IV Sbjct: 92 YLPFGDLNIFXD--HGQVVAPHYHRELDLSTGIVTVTYTIGGVQYTRELFVTYPDRAIVV 149 Query: 80 KISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCP--------GKRIPPKANANDD 131 +++ S+ G LSF LDSLL + S V G + G P + P + D Sbjct: 150 RLTASKEGFLSFRAKLDSLLRHVSSV-GAEHYTISGTAPEHVSPSYYDEENPVRYGHPDX 208 Query: 132 PKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKD 191 +G F L + + G ++ L V G+ A L AS+SFD P S ++D Sbjct: 209 SQGXTFHGRL---AAVNEGGSLKVDADGLHVXGATCATLYFSASTSFD-PSTGASCLERD 264 Query: 192 PTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRS--PKDIVTDTCSEENIDT 249 P+ ++ +++I Y ++ RHL+DY KLF+RVS+ L S P D TD Sbjct: 265 PSLRTIETIKAICKRGYKEIVNRHLEDYTKLFNRVSLHLGESIAPADXSTD--------- 315 Query: 250 VPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPH 309 +R+K + + D LVELLFQ+GRYL I+SSRPGTQ ANLQGIWNE+ W S Sbjct: 316 ----QRIKEYGS-RDLGLVELLFQYGRYLXIASSRPGTQPANLQGIWNEETRAPWSSNYT 370 Query: 310 VNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKS 369 +NIN E NYW + CNL+E +PL F+ L+ NG KTA++NY A GWV HH D+W ++ Sbjct: 371 LNINAEXNYWPAETCNLAELHKPLIHFIERLAANGKKTAEINYGARGWVAHHNADLWGQT 430 Query: 370 SA----DRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI 425 + G VWA WP GG WL HLWEHY + D +L AYP+ + A F LDWLI Sbjct: 431 APVGDFGHGDPVWAFWPXGGVWLTQHLWEHYTFGEDEAYLRDTAYPIXKEAALFCLDWLI 490 Query: 426 EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDA 485 E GYL T+PSTSPE F + K VS ++T D+++I E F I AA+ L +ED Sbjct: 491 ENEAGYLVTSPSTSPEQRFRIGE-KGYAVSSATTXDLSLIAECFDNCIQAAKRLSIDED- 548 Query: 486 LVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDL 545 V+ + + RL P +I + G + EW+ DF+D +VHHRH+SHL G++PG IT + P+L Sbjct: 549 FVKALSDAKQRLLPLQIGKRGQLQEWSNDFEDEDVHHRHVSHLVGIYPGRLITEQSAPNL 608 Query: 546 CKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLY 605 +AA+ +L+ RG+EG GWS+ WK +LWAR D R++ L+ + GG+Y Sbjct: 609 FEAAKTSLEIRGDEGTGWSLGWKISLWARFKDGNRCERLLSNXLTLIKEDESXQHRGGVY 668 Query: 606 SNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGET 665 +NLF AHPPFQID NF TA +AE L+QS L LPALP D W G VKGL+ RGG Sbjct: 669 ANLFGAHPPFQIDGNFSATAGIAEXLLQSHQGYLEFLPALP-DSWKDGYVKGLRGRGGYE 727 Query: 666 VSICWKDGDLHEVGIYSN 683 V + W +G L +V I S Sbjct: 728 VDLAWTNGALVKVEIVST 745

PyMOL of 2rdy

>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum (Apo Form) Length = 899

Back alignment and structure

>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complex With Substrate Length = 899

Back alignment and structure

>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complexes With Products Length = 898

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		728
2rdy_A		803	BH0842 protein; PSI-II, structural genomics, prote	0.0
2eab_A		899	Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifi	0.0
1h54_A		754	Maltose phosphorylase; hydrolase, maltose metaboli	5e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
3cih_A		739	Putative alpha-rhamnosidase; structural genomics,	4e-04

>2rdy_A BH0842 protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.03A {Bacillus halodurans c-125} Length = 803	Back alignment and structure

 Score =  611 bits (1575), Expect = 0.0
 Identities = 287/711 (40%), Positives = 400/711 (56%), Gaps = 37/711 (5%)

Query: 20  YQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVT 79
           Y   GD+ +  D   +      Y RELDL+T    V Y++G V++TRE F + PD+ IV 
Sbjct: 92  YLPFGDLNIFMDHGQVVAPH--YHRELDLSTGIVTVTYTIGGVQYTRELFVTYPDRAIVV 149

Query: 80  KISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANAN--------DD 131
           +++ S+ G LSF   LDSLL + S V G     + G  P    P   +          D 
Sbjct: 150 RLTASKEGFLSFRAKLDSLLRHVSSV-GAEHYTISGTAPEHVSPSYYDEENPVRYGHPDM 208

Query: 132 PKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKD 191
            +G+ F   L        G++   +   L V G+  A L   AS+SFD P    S  ++D
Sbjct: 209 SQGMTFHGRLAAVNEG--GSLKV-DADGLHVMGATCATLYFSASTSFD-PSTGASCLERD 264

Query: 192 PTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVP 251
           P+  ++  +++I    Y ++  RHL+DY KLF+RVS+ L  S                + 
Sbjct: 265 PSLRTIETIKAICKRGYKEIVNRHLEDYTKLFNRVSLHLGESIAP-----------ADMS 313

Query: 252 SAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVN 311
           + +R+K + +  D  LVELLFQ+GRYL+I+SSRPGTQ ANLQGIWNE+    W S   +N
Sbjct: 314 TDQRIKEYGS-RDLGLVELLFQYGRYLMIASSRPGTQPANLQGIWNEETRAPWSSNYTLN 372

Query: 312 INLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSA 371
           IN EMNYW +  CNL+E  +PL  F+  L+ NG KTA++NY A GWV HH  D+W +++ 
Sbjct: 373 INAEMNYWPAETCNLAELHKPLIHFIERLAANGKKTAEINYGARGWVAHHNADLWGQTAP 432

Query: 372 ----DRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEG 427
                 G  VWA WPMGG WL  HLWEHY +  D  +L   AYP+++  A F LDWLIE 
Sbjct: 433 VGDFGHGDPVWAFWPMGGVWLTQHLWEHYTFGEDEAYLRDTAYPIMKEAALFCLDWLIEN 492

Query: 428 HDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALV 487
             GYL T+PSTSPE  F   +   A  S ++TMD+++I E F   I AA+ L  +ED  V
Sbjct: 493 EAGYLVTSPSTSPEQRFRIGEKGYAV-SSATTMDLSLIAECFDNCIQAAKRLSIDED-FV 550

Query: 488 EKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCK 547
           + +  +  RL P +I + G + EW+ DF+D +VHHRH+SHL G++PG  IT +  P+L +
Sbjct: 551 KALSDAKQRLLPLQIGKRGQLQEWSNDFEDEDVHHRHVSHLVGIYPGRLITEQSAPNLFE 610

Query: 548 AAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSN 607
           AA+ +L+ RG+EG GWS+ WK +LWAR  D     R++  +  L+  +      GG+Y+N
Sbjct: 611 AAKTSLEIRGDEGTGWSLGWKISLWARFKDGNRCERLLSNMLTLIKEDESMQHRGGVYAN 670

Query: 608 LFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVS 667
           LF AHPPFQID NF  TA +AEML+QS    L  LPALP D W  G VKGL+ RGG  V 
Sbjct: 671 LFGAHPPFQIDGNFSATAGIAEMLLQSHQGYLEFLPALP-DSWKDGYVKGLRGRGGYEVD 729

Query: 668 ICWKDGDLHEVGIYSNYSNN---DHDSFKTLHYRGTSVKVNLSAGKIYTFN 715
           + W +G L +V I S  +            +   G  V+ ++      +F 
Sbjct: 730 LAWTNGALVKVEIVSTKTQTCEVLTRISMRITESGEEVEGDVLDSGRMSFQ 780

PyMOL of 2rdy

>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A* Length = 899	Back alignment and structure

>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A {Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3 Length = 754	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482} Length = 739	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		728
2eab_A		899	Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifi	100.0
2rdy_A		803	BH0842 protein; PSI-II, structural genomics, prote	100.0
1h54_A		754	Maltose phosphorylase; hydrolase, maltose metaboli	100.0
2okx_A		956	Rhamnosidase B; alpha barrel, glycoside hydrolase	99.74
3qde_A		811	Cellobiose phosphorylase; cellulase, phosphate, tr	98.79
3rrs_A		822	Cellobiose phosphorylase; GH94, alpha barrel, disa	98.78
1v7w_A		807	Chitobiose phosphorylase; beta-sandwich, (alpha/al	98.75
3cih_A		739	Putative alpha-rhamnosidase; structural genomics,	98.73
3c68_A		761	Uncharacterized protein YGJK; GH63, processing alp	97.89
1ulv_A		1020	Glucodextranase; GH family 15, (alpha-alpha)6-barr	97.84
2p0v_A		489	Hypothetical protein BT3781; alpha-beta protein, s	96.37
2z07_A		420	Putative uncharacterized protein TTHA0978; unchara	95.13
1lf6_A		684	Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica	92.15
2jg0_A		535	Periplasmic trehalase; family 37, hydrolase, inhib	87.82
3p2c_A		463	Putative glycosyl hydrolase; structural genomics,	85.09
3qt9_A		427	Putative uncharacterized protein CPE0426; alpha-al	84.71
2ahf_A		377	Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba	84.07
2vn4_A		599	Glucoamylase; hydrolase, carbohydrate binding, gly	80.31

>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*	Back alignment and structure

Probab=100.00  E-value=5e-138  Score=1234.52  Aligned_cols=648  Identities=31%  Similarity=0.553  Sum_probs=583.6

Q ss_pred             ccCcccccceeEEEEecCCCCCCCCCCeEEEEeccccEEEEEEEECCEEEEEEEEEecCCCEEEEEEEcCCCCceEEEEE
Q 004823           15 LQMYVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVS   94 (728)
Q Consensus        15 ~~~~~y~~lG~l~i~~~~~~~~~~~~~Y~R~LDl~~gv~~v~~~~~g~~~~re~f~S~pd~viv~~i~~~~~~~l~~~~~   94 (728)
                      .++++|||+|+|.|+|......++  +|+|+|||++|+++|+|+.+|+.|+|++|||+||+|||+||+++++++|+|+++
T Consensus       131 ~~~~~y~~~g~l~i~~~~~~~~~~--~Y~R~LDl~~a~~~~~y~~~gv~y~re~f~S~pd~viv~~lta~~~~~l~~~~~  208 (899)
T 2eab_A          131 AEQGNYLNWGDIYLDYGFNDTTVT--EYRRDLNLSKGKADVTFKHDGVTYTREYFASNPDNVMVARLTASKAGKLNFNVS  208 (899)
T ss_dssp             HHHCCBCCCEEEEEECCCSCCCCE--EEEEEEETTTTEEEEEEEETTEEEEEEEEEETTTTEEEEEEEESSTTCEEEEEE
T ss_pred             cCCcccccceeEEEEccCCCCCcc--CeEEEEEccceEEEEEEEECCEEEEEEEEEecCCCEEEEEEEeCCCCcEEEEEE
Confidence            356799999999999963234678  999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCe----eeecCCeEEEEEecCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCceEEEec---CCeEEEeCCcE
Q 004823           95 LDSLLDNHS----YVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALE---DKKLKVEGSDW  167 (728)
Q Consensus        95 l~~~~~~~~----~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~~~~~~---~~~l~v~~a~~  167 (728)
                      |+++.....    ...+++.|+++|+.+.             +++.|+++++|+.+|  |+++...   +++|.|++|++
T Consensus       209 l~~~~~~~~~~~~~~~~~~~l~l~g~~~~-------------~g~~~~~~~~v~~~g--G~~~~~~~~~~~~l~v~~a~~  273 (899)
T 2eab_A          209 MPTNTNYSKTGETTTVKGDTLTVKGALGN-------------NGLLYNSQIKVVLDN--GEGTLSEGSDGASLKVSDAKA  273 (899)
T ss_dssp             CCBCTTSCEEEEEEEEETTEEEEEEEETT-------------TCCEEEEEEEEEEGG--GCSEEEECTTSSSEEEEEESE
T ss_pred             ecCCcccccccceeeccCCEEEEEEEECC-------------CCeEEEEEEEEEeCC--ceEEeecCCCCCeEEEECCcE
Confidence            998754222    2235688999998752             479999999999988  9887732   46899999999


Q ss_pred             EEEEEEEeecCCCCCCCCCCCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcceeEEecCCCCCcccccCcc
Q 004823          168 AVLLLVASSSFDGPFINPSDSKK---DPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSE  244 (728)
Q Consensus       168 v~l~~~~~T~~~~~~~~~~~~~~---~~~~~~~~~l~~a~~~~y~~l~~~H~~~w~~~w~r~~l~l~~~~~~~~~~~~~~  244 (728)
                      |+|++++.|+|+..+... ..+.   ++.+.+.+.|++|.+++|++|+++|+++|+++|+|++|+|++++.+        
T Consensus       274 v~l~~~~~T~y~~~~~~~-~~~~~~~~~~~~~~~~l~~a~~~gy~~Ll~~H~~~w~~lw~R~~l~L~~~~~~--------  344 (899)
T 2eab_A          274 VTLYIAAATDYKQKYPSY-RTGETAAEVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQSGHS--------  344 (899)
T ss_dssp             EEEEEEEEESBCCCTTTC-BCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTCEEESSCCCTT--------
T ss_pred             EEEEEEEeeccccccccc-cCccccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCeeEEEeCCCccc--------
Confidence            999999999998522111 1133   3456788888888888999999999999999999999999876420        


Q ss_pred             cccCCCChHHHHhhccCC-----CChHHHHHHHHHHHHHHHhcCCC-CCCCCCCcccc------CCCCCCCCCCCccccc
Q 004823          245 ENIDTVPSAERVKSFQTD-----EDPSLVELLFQFGRYLLISSSRP-GTQVANLQGIW------NEDLSPTWDSAPHVNI  312 (728)
Q Consensus       245 ~~~~~~~t~~rl~~~~~~-----~d~~L~~l~f~~grYllisssR~-g~~p~~LqG~W------~~~~~~~W~g~y~~ni  312 (728)
                       ....+||+||+++|+.+     .||+|++++|||||||||||||+ |++|+||||+|      |....|+|+|+||+||
T Consensus       345 -~~~~~~td~~l~~~~~~~~~~~~d~~L~~l~f~fgRYlLissSr~~g~lP~nLqGiWs~~~g~n~~~~p~W~g~y~~Ni  423 (899)
T 2eab_A          345 -SDGAVATDALLKAYQRGSATTAQKRELETLVYKYGRYLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTPWGSDFHMNV  423 (899)
T ss_dssp             -STTCCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCCBTTBTCCCCCCSSTTSSSGGGGCEETTT
T ss_pred             -ccccCCHHHHHHHhhcccccccccHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccCccccCCCCcCcceeeec
Confidence             01368999999999876     26899999999999999999997 68999999999      7777899999999999


Q ss_pred             ccccccccccCCCchhhhHHHHHHHHHhhHHHHHHHHHHcCCC-------------ceEEcccCCcCCCCCCCCCCcccc
Q 004823          313 NLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLAS-------------GWVIHHKTDIWAKSSADRGKVVWA  379 (728)
Q Consensus       313 N~qm~ywp~~~~nlpE~~~pll~~~~~~l~~~r~~A~~~yG~~-------------G~~~~~~td~w~~~~p~~~~~~~~  379 (728)
                      |+||||||++.+|+|||++||++|++++++.||++||++|||+             ||+.|+++++|+.++| ...+.|+
T Consensus       424 NtqmnywPa~~~nlpE~a~pLl~y~~~ll~~gr~~Ar~~yG~~ga~~~~~~~g~~~Gw~~~~~~~~w~~t~p-~~~~~w~  502 (899)
T 2eab_A          424 NLQMNYWPTYSANMGELAEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTPIGEGEGYMAHTENTAYGWTAP-GQSFSWG  502 (899)
T ss_dssp             HHHHHTSSTTTTTCGGGGHHHHHHHHHTHHHHHHHHHHHHCCCCSSTTTSCTTSSSCCCCCSEECTTCCCSC-CSSHHHH
T ss_pred             ccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCcCCeEEeeccCCcccCCC-CCCCccc
Confidence            9999999999999999999999999999999999999999999             8999999999999988 4567888


Q ss_pred             cCccCHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHH-hceecC---CCeEEECCCCCCCCCcCCCCCCcccc-
Q 004823          380 LWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD-WLIEGH---DGYLETNPSTSPEHEFIAPDGKLACV-  454 (728)
Q Consensus       380 ~w~~~~awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~-~l~~~~---~G~~~~~ps~sPE~~~~~~~g~~~~~-  454 (728)
                      .|+++++|||+|+|+||+||+|++|| +++||+|+++|+||++ ++++++   +|+|++.||+|||+.+         . 
T Consensus       503 ~~~~~~aWla~~lweyy~yTgD~~fL-~~~yPlLkeaA~F~~d~~l~~~~~~~~G~~vi~ps~SPE~~~---------~~  572 (899)
T 2eab_A          503 WSPAAVPWILQNVYEAYEYSGDPALL-DRVYALLKEESHFYVNYMLHKAGSSSGDRLTTGVAYSPEQGP---------LG  572 (899)
T ss_dssp             CCTTHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHHHHHHHHHTCEECCGGGCSSEECSEEEETTEEE---------EE
T ss_pred             ccCchHHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHHHHhhheEecCcCCCCeEEEccccCCCCCC---------CC
Confidence            89999999999999999999999999 8999999999999999 888888   7999999999999863         5 


Q ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHhCC-------------------------CchHHHHHHHHHcCCCCCCCCCCCCcee
Q 004823          455 SYSSTMDMAIIREVFSAIISAAEVLEK-------------------------NEDALVEKVLKSLPRLRPTKIAEDGSIM  509 (728)
Q Consensus       455 ~~n~t~d~~~~r~l~~~~~~a~~~L~~-------------------------~~~~~~~~w~~~~~~L~p~~i~~~G~l~  509 (728)
                      ++|++|||+||+++|+.+++++++|++                         + ++++++|+++++||+|++|+++|+|+
T Consensus       573 ~~~~tydn~l~~~ll~~~i~aa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~w~~~~~kL~p~~i~~~G~l~  651 (899)
T 2eab_A          573 TDGNTYESSLVWQMLNDAIEAAKAKGDPDGLVGNTTDCSADNWAKNDSGNFTD-ANANRSWSCAKSLLKPIEVGDSGQIK  651 (899)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTCTTCCCCCSTTCCGGGGCBCTTSCBSC-TTSCCCHHHHHHHHCCCCBCTTSCBC
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhCcccccchhhhhhhhhccccccccccCC-HHHHHHHHHHHhCCCCcccCCCceee
Confidence            899999999999999999999999998                         6 66788999999999999999999999


Q ss_pred             eecccCC--C-----------CcCCCCccccccccCCCCccCCCCCHHHHHHHHHHHHHhC------CCCCCchHHHHHH
Q 004823          510 EWAQDFK--D-----------PEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRG------EEGPGWSITWKTA  570 (728)
Q Consensus       510 ew~~~~~--~-----------~~~~hrh~shL~~l~P~~~i~~~~~p~l~~aa~~tl~~r~------~~~sgws~~~~~~  570 (728)
                      ||.+++.  +           ++++|||+|||++|||+++|+. .+|++++||+++|+.|+      ++.+|||++|+++
T Consensus       652 EW~~d~~~~~~~~G~~i~~~~~~~~HRH~ShL~~lyPg~~I~~-~~pel~~aa~~tL~~Rg~~g~~~~~~tGws~aw~~~  730 (899)
T 2eab_A          652 EWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFPGDLITI-DNSEYMDAAKTSLRYRCFKGNVLQSNTGWAIGQRIN  730 (899)
T ss_dssp             SSTTBCSTTBBTTSCBCTTCCTTSCCSCCGGGTTTTTSSSSCT-TCHHHHHHHHHHHHHHHEETTEECCCCHHHHHHHHH
T ss_pred             ecccccccccccccccccccCCCcCCcchhhhHhhcCccccCC-CCHHHHHHHHHHHHHhCcccCCCCCCCchHHHHHHH
Confidence            9998766  2           6689999999999999999994 89999999999999998      7889999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhccCCcccccCCCCcccccccCCCCccccchhhHHHHHHHHhhhccC-----------Cee
Q 004823          571 LWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTL-----------NDL  639 (728)
Q Consensus       571 ~aARLgd~e~A~~~l~~~~~~~~~~~~~~~~~g~~~nl~~~h~pfqidgn~g~~agi~emLlqs~~-----------g~i  639 (728)
                      +||||||+++|+++|+.+++           ++++||||+.|||||||||||+++||+||||||+.           |.|
T Consensus       731 ~~ARL~dg~~A~~~l~~ll~-----------~~~~~Nl~~~h~pfqiDgnfG~~agi~EMLlQS~~~~~~~~g~~~~g~I  799 (899)
T 2eab_A          731 SWARTGDGNTTYQLVELQLK-----------NAMYANLFDYHAPFQIDGNFGNTSGVDEMLLQSNSTFTDTAGKKYVNYT  799 (899)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-----------HSBCTTCCBBSSSBCTHHHHHHHHHHHHHHEECCCEEECTTCCEEETCE
T ss_pred             HHHHcCCHHHHHHHHHHHHh-----------cCcCcccccCCCCeeeccchhHHHHHHHHHhccccccccccCCCcCCeE
Confidence            99999999999999999987           58899999999999999999999999999999999           999


Q ss_pred             EeCCCCCcccccCceeeceEeeccEEEEEEEeCCeEEEEEEEeCCCCCcccceeeeeecC--------------------
Q 004823          640 YLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRG--------------------  699 (728)
Q Consensus       640 ~llPalP~~~W~~gs~~gL~arG~~~V~~~w~~g~l~~~~i~s~~~~~~~~~~~~~~~~~--------------------  699 (728)
                      +|||||| ++|++|+|+||||||||+||++|++|++++++|+|.+|++|+   |+.++++                    
T Consensus       800 ~LlPAlP-~~W~~Gsv~GLrarGgf~V~~~w~~G~l~~~~i~s~~g~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~  875 (899)
T 2eab_A          800 NILPALP-DAWAGGSVSGLVARGNFTVGTTWKNGKATEVRLTSNKGKQAA---VKITAGGAQNYEVKNGDTAVNAKVVTN  875 (899)
T ss_dssp             EESTTCC-TTCCSEEEEEEEETTTEEEEEEEETTEEEEEEEEESSCCCEE---EEETTTCGGGEEEEETTEECCCEEEEC
T ss_pred             EEcCcCC-cccccCeEEEEEecCcEEEEEEEECCEEEEEEEEeCCCCeEE---EEeCCCCcceeEEEecCCcEEEeeccc
Confidence            9999999 999999999999999999999999999999999999999999   6655411                    


Q ss_pred             ----eEEEEEccCCcEEEEeec
Q 004823          700 ----TSVKVNLSAGKIYTFNRQ  717 (728)
Q Consensus       700 ----~~~~~~~~~G~~~~i~~~  717 (728)
                          ..++|+|++|++|+|++.
T Consensus       876 ~~~~~~~~~~t~~g~~y~i~~~  897 (899)
T 2eab_A          876 ADGASLLVFDTTAGTTYTITKK  897 (899)
T ss_dssp             TTSCEEEEECCCTTEEEEEEEC
T ss_pred             ccCCceEEEEccCCCEEEEEec
Confidence                237899999999999864

PyMOL of 2eab

>2rdy_A BH0842 protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.03A {Bacillus halodurans c-125}	Back alignment and structure

>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A {Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3	Back alignment and structure

>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}	Back alignment and structure

>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}	Back alignment and structure

>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*	Back alignment and structure

>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*	Back alignment and structure

>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*	Back alignment and structure

>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8	Back alignment and structure

>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}	Back alignment and structure

>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*	Back alignment and structure

>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*	Back alignment and structure

>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*	Back alignment and structure

>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A	Back alignment and structure

>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A	Back alignment and structure

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		728
d1h54a1		485	a.102.1.4 (A:269-753) Lactobacillus maltose phosph	2e-83

>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase, central domain {Lactobacillus brevis [TaxId: 1580]} Length = 485	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Lactobacillus maltose phosphorylase, central domain
species: Lactobacillus brevis [TaxId: 1580]

 Score =  270 bits (692), Expect = 2e-83
 Identities = 55/508 (10%), Positives = 128/508 (25%), Gaps = 89/508 (17%)

Query: 187 DSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEEN 246
           D+++  T+        +   SY DL   H   + + + +  + +    +           
Sbjct: 1   DTQESLTAAMHQLSDKVAQSSYEDLLNAHTAIWAQRWEKSDVVIKGDDES---------- 50

Query: 247 IDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANL--QGIWNEDLSPTW 304
                                 +   +F  + L S+        N+  +G   E     +
Sbjct: 51  ----------------------QQGIRFNLFQLFSTYYGEDARLNIGPKGFTGEK----Y 84

Query: 305 DSAPHVNINLEMNYWQS-LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKT 363
                   + E   +   L     +    L  +           AQ   L  G +    T
Sbjct: 85  G--GATYWDTEAFAFPVYLGITDPKVTRNLLMYRYKQLDGAYINAQEQGLK-GALFPMVT 141

Query: 364 DIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW 423
               +   +    +          +   ++ +  YT D  ++      +L   + F  D 
Sbjct: 142 FDGIECHNEWE--ITFEEIHRNGDIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRFWADR 199

Query: 424 LI-EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKN 482
           +     +     +  T  +      D        +       +  +       A+ L+ +
Sbjct: 200 VHFSKRNNQYMIHGVTGADEYENNVDNNWDTNMLAQWTLKYTLEILGKVDQDTAKQLDVS 259

Query: 483 ED------ALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHT 536
           ++       +V+++     +     +  DG + +  +         R ++  +       
Sbjct: 260 DEEKTKWQDIVDRMYLPYDKDLNIFVQHDGFLDKDIEPVSSIPADQRPINQNWSWDKILR 319

Query: 537 ITIEKNPDL---------------CKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHA 581
               K  D+                KA     +         S    + L A LH ++ A
Sbjct: 320 SPYIKQGDVLQGIWDFIDDYTPEQKKANFDFYEPLTVHESSLSPAIHSVLAADLHYEDKA 379

Query: 582 YRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLV------QST 635
             +  R                   +L   +       +          +V      +  
Sbjct: 380 VELYSRT---------------ARLDLDNYNNDTTDGLHITSMTGAWIAVVQGFAGMRVR 424

Query: 636 LNDLYLLPALPWDKWSSGCVKGLKARGG 663
              L+  P LP   W+S   +    R  
Sbjct: 425 DGQLHYAPFLP-KTWTSYTFR-QVFRDR 450

PyMOL of d1h54a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		728
d1h54a1		485	Lactobacillus maltose phosphorylase, central domai	100.0
d1v7wa1		531	Chitobiose phosphorylase ChbP {Vibrio proteolyticu	99.86
d1h54a2		268	Lactobacillus maltose phosphorylase, N-terminal do	95.17
d2jg0a1		511	Periplasmic trehalase TreA {Escherichia coli [TaxI	89.34
d2d5ja1		377	Unsaturated glucuronyl hydrolase {Bacillus sp. GL1	85.64

>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase, central domain {Lactobacillus brevis [TaxId: 1580]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Lactobacillus maltose phosphorylase, central domain
species: Lactobacillus brevis [TaxId: 1580]

Probab=100.00  E-value=2.6e-69  Score=610.61  Aligned_cols=428  Identities=12%  Similarity=0.038  Sum_probs=364.3

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcceeEEecCCCCCcccccCcccccCCCChHHHHhhccCCCChHHHHH
Q 004823          191 DPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVEL  270 (728)
Q Consensus       191 ~~~~~~~~~l~~a~~~~y~~l~~~H~~~w~~~w~r~~l~l~~~~~~~~~~~~~~~~~~~~~t~~rl~~~~~~~d~~L~~l  270 (728)
                      ++...+.+.++++.+++|++|+++|+++|++||+|++|+|++|+                               .|+ +
T Consensus         5 ~~~~~~~~~~~~a~~~~y~~L~~~h~~~w~~~~~r~~i~l~~d~-------------------------------~l~-~   52 (485)
T d1h54a1           5 SLTAAMHQLSDKVAQSSYEDLLNAHTAIWAQRWEKSDVVIKGDD-------------------------------ESQ-Q   52 (485)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCEEEESCH-------------------------------HHH-H
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCceEEeCCCH-------------------------------HHH-H
Confidence            34455667788899999999999999999999999999998653                               233 3


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCC--ccccCCCCCCCCCCCcccccccccccccccC-CCchhhhHHHHHHHHHhhHHHHHH
Q 004823          271 LFQFGRYLLISSSRPGTQVANL--QGIWNEDLSPTWDSAPHVNINLEMNYWQSLP-CNLSECQEPLFDFLTYLSINGSKT  347 (728)
Q Consensus       271 ~f~~grYllisssR~g~~p~~L--qG~W~~~~~~~W~g~y~~niN~qm~ywp~~~-~nlpE~~~pll~~~~~~l~~~r~~  347 (728)
                      +|+++||+|+|++|++..|.++  +|+|++    .|.|++  +||+||+|||++. +|+||+++++++|+.++++.+|++
T Consensus        53 ~~~~~~Y~l~~s~~~~~~~~~~~~~Gl~~~----~~~G~~--~wd~~~~~~p~~l~~~~pe~~~~~~~~~~~~l~~ar~~  126 (485)
T d1h54a1          53 GIRFNLFQLFSTYYGEDARLNIGPKGFTGE----KYGGAT--YWDTEAFAFPVYLGITDPKVTRNLLMYRYKQLDGAYIN  126 (485)
T ss_dssp             HHHHHHHHHHHHCCSSCTTCCCCTTTTSCC----TTCSSB--CTHHHHTHHHHHHHHSCHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCCCC----CCCCcc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999988887765  999997    588864  4789999999975 699999999999999999999999


Q ss_pred             HHHHcCCCceEEcccCCcCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceec
Q 004823          348 AQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEG  427 (728)
Q Consensus       348 A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~w~~~~awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~  427 (728)
                      |++ |||+|+++|+.++.++...+  ..+.+..+...++|+++++|+||+||+|++||++++||+|+++|+||+++++++
T Consensus       127 A~~-~g~~G~~~p~~~~~~~~~~~--~~~~~~~~~~~~~wi~~~~~~yy~~TgD~~~L~e~~~pll~e~a~F~~~~l~~~  203 (485)
T d1h54a1         127 AQE-QGLKGALFPMVTFDGIECHN--EWEITFEEIHRNGDIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRFWADRVHFS  203 (485)
T ss_dssp             HHT-TTCCSCCCCSSBSSSSBCCC--CHHHHTTCTHHHHHHHHHHHHHHHHHCCCTTTTTHHHHHHHHHHHHHHHHCEEE
T ss_pred             HHH-hccCCCccceeCCCCCCCCC--CCCCcccccccchHHHHHHHHHHHhcCcHHHHHhcccHHHHHHHHHHHhheEEe
Confidence            998 89999999999988886544  122333445568999999999999999999999999999999999999999986


Q ss_pred             C-CCeEEECCCCCCCCCcCCCCCCccccccCcHHHHHHHHHHHHHHHH--------HHHHhCCCchHHHHHHHHHcCCCC
Q 004823          428 H-DGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIIS--------AAEVLEKNEDALVEKVLKSLPRLR  498 (728)
Q Consensus       428 ~-~G~~~~~ps~sPE~~~~~~~g~~~~~~~n~t~d~~~~r~l~~~~~~--------a~~~L~~~~~~~~~~w~~~~~~L~  498 (728)
                      + +|+|++.|++|||+.+        ..+.|+.+++.++.+.+..+++        +++.|+++ .++.++|+++++||+
T Consensus       204 ~~~g~~~~~~~~~p~~~~--------~~~~~~~~~~~~~~~~l~~a~~~~~~l~~~~~~~l~~~-~~~~~~w~~~~~~L~  274 (485)
T d1h54a1         204 KRNNQYMIHGVTGADEYE--------NNVDNNWDTNMLAQWTLKYTLEILGKVDQDTAKQLDVS-DEEKTKWQDIVDRMY  274 (485)
T ss_dssp             TTTTEEECCSBCCSSTTS--------CSBSCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHCCC-HHHHHHHHHHHHTBC
T ss_pred             CCCCeEecCCCCcccccc--------cccCCCcceehHHHHHHHHHHHHHHHhHHHHHHHhCCC-HHHHHHHHHHHhcCC
Confidence            5 8999999999998753        2467899999999999988775        67889998 888999999999997


Q ss_pred             CC-------CCCCCCceeeecccCCCCcCCCCccccccccCCCCccCCCCC---------------HHHHHHHHHHHHHh
Q 004823          499 PT-------KIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKN---------------PDLCKAAEKTLQKR  556 (728)
Q Consensus       499 p~-------~i~~~G~l~ew~~~~~~~~~~hrh~shL~~l~P~~~i~~~~~---------------p~l~~aa~~tl~~r  556 (728)
                      ++       .++.+|++.+|.+++....++|||+||+++++|+.++...++               +++++++.+.++.|
T Consensus       275 ~p~~~~~g~~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~  354 (485)
T d1h54a1         275 LPYDKDLNIFVQHDGFLDKDIEPVSSIPADQRPINQNWSWDKILRSPYIKQGDVLQGIWDFIDDYTPEQKKANFDFYEPL  354 (485)
T ss_dssp             CCEETTTTEECSSTTGGGSCCCCGGGSCGGGCSGGGTSCHHHHHHSSCBSSCSHHHHHHHTTTSSCHHHHHHHHHHHGGG
T ss_pred             CCCCcCCCccccccceeecccccccccCcccCCchhhcccccccCccccccHHHHhhcccCCCcCCHHHHHHHHHHHhcc
Confidence            33       244678999999888888999999999999999987765544               55677778888889


Q ss_pred             CCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhccCCcccccCCCCcccccccCCCCccccchhhHHHHHHHHh-----
Q 004823          557 GEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEML-----  631 (728)
Q Consensus       557 ~~~~sgws~~~~~~~aARLgd~e~A~~~l~~~~~~~~~~~~~~~~~g~~~nl~~~h~pfqidgn~g~~agi~emL-----  631 (728)
                      +.+++|||.+|+++++||||++++|+++|++.+.               .++++.|++|+.++|+|.++|+++||     
T Consensus       355 ~~~~~~~s~~~~a~~~a~lg~~~~A~~~~~~~~~---------------~~l~~~~~~~~~g~~~~~~ag~~~~l~~g~~  419 (485)
T d1h54a1         355 TVHESSLSPAIHSVLAADLHYEDKAVELYSRTAR---------------LDLDNYNNDTTDGLHITSMTGAWIAVVQGFA  419 (485)
T ss_dssp             BCCCSTTHHHHHHHHHHHTTCHHHHHHHHTTTTT---------------TTTTTTTSCGGGCCCGGGGGHHHHHHHTTTS
T ss_pred             CCCCCccCHHHHHHHHHhcccHHHHHHHHHHhcc---------------cchhhcCCCCCCCcchhhHHHHHHHHHHHhc
Confidence            9999999999999999999999999999876443               45667788898888999999999999     


Q ss_pred             -hhccCCeeEeCCCCCcccccCceeeceEeeccEEEEEEEeCCeEEEEEEEeCCCCCcc
Q 004823          632 -VQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDH  689 (728)
Q Consensus       632 -lqs~~g~i~llPalP~~~W~~gs~~gL~arG~~~V~~~w~~g~l~~~~i~s~~~~~~~  689 (728)
                       |||++|.|+|+|||| ++|++++|+ +++||++ ++++|+++.+   +|++..|.+|+
T Consensus       420 Glq~~~~~l~l~PalP-~~W~~~~~~-~~~rG~~-~~i~v~~~~~---~~~~~~g~p~~  472 (485)
T d1h54a1         420 GMRVRDGQLHYAPFLP-KTWTSYTFR-QVFRDRL-IEVSVHADGP---HFKLLSGEPLT  472 (485)
T ss_dssp             CCEEETTEEEECCCCC-TTCSEEEEE-EEETTEE-EEEEEETTEE---EEEEEESSCEE
T ss_pred             ceeeeCCEEEEeCCCC-CCCCccEEE-EEECCeE-EEEEEECCeE---EEEEccCCeEE
Confidence             589999999999999 999999998 9999995 6777777663   44444567887

PyMOL of d1h54a1

>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}	Back information, alignment and structure

>d1h54a2 b.30.5.3 (A:1-268) Lactobacillus maltose phosphorylase, N-terminal domain {Lactobacillus brevis [TaxId: 1580]}	Back information, alignment and structure

>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}	Back information, alignment and structure