Citrus Sinensis ID: 004825
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 728 | 2.2.26 [Sep-21-2011] | |||||||
| F4KBF3 | 721 | Probable acyl-activating | yes | no | 0.984 | 0.994 | 0.72 | 0.0 | |
| Q84P17 | 727 | Probable acyl-activating | no | no | 0.968 | 0.969 | 0.490 | 0.0 | |
| A7MPJ7 | 652 | Acetyl-coenzyme A synthet | yes | no | 0.722 | 0.806 | 0.284 | 1e-44 | |
| P27550 | 652 | Acetyl-coenzyme A synthet | N/A | no | 0.728 | 0.812 | 0.282 | 2e-44 | |
| Q8FAY8 | 652 | Acetyl-coenzyme A synthet | yes | no | 0.728 | 0.812 | 0.282 | 2e-44 | |
| Q8Z1R0 | 652 | Acetyl-coenzyme A synthet | N/A | no | 0.795 | 0.888 | 0.277 | 2e-44 | |
| Q88EH6 | 653 | Acetyl-coenzyme A synthet | yes | no | 0.791 | 0.882 | 0.272 | 3e-44 | |
| A8AN29 | 652 | Acetyl-coenzyme A synthet | yes | no | 0.795 | 0.888 | 0.274 | 4e-44 | |
| Q8ZKF6 | 652 | Acetyl-coenzyme A synthet | yes | no | 0.795 | 0.888 | 0.276 | 4e-44 | |
| Q8X5T5 | 652 | Acetyl-coenzyme A synthet | N/A | no | 0.728 | 0.812 | 0.281 | 2e-43 |
| >sp|F4KBF3|AAE17_ARATH Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1063 bits (2749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/725 (72%), Positives = 612/725 (84%), Gaps = 8/725 (1%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATP-ATWQNITTHILSPDLPFS 64
YK+L+ IT DIEALGI ++E+L L +I+ HG++TP TW I+ IL P+LPFS
Sbjct: 3 YKSLNSITKSDIEALGISGDVSEKLLRDLEDII--HGSSTPPETWIQISRRILHPNLPFS 60
Query: 65 FHQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQE 124
FHQ++YYGCYKDFGPD PAWIPDP+ A +TNVGKLL+ RG+EFLG YK+P+SSFS+FQE
Sbjct: 61 FHQMMYYGCYKDFGPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSFSSFQE 120
Query: 125 FSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLS 184
FSVSNPEVYWKTVL+E++ FSVPP+CIL ++ +G+N PGG+WLPGA++NPA+NCL+
Sbjct: 121 FSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDN----PGGKWLPGAYLNPARNCLT 176
Query: 185 VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM 244
KR LDDIVIRW DEG LPV +MTL ELR++VWL A+AL+ALGL++ SAIA+DMPM
Sbjct: 177 NGFKRRLDDIVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVDMPM 236
Query: 245 NVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYR- 303
NV SV+IYLAIVLAG++VVSIADSF+ EIS RL+ISKAKAIFTQD+IIRGDKSIPLYR
Sbjct: 237 NVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPLYRR 296
Query: 304 VIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF 363
V+DA+APLAIV+PA+GSS MKLR+ D+SW +FL R L+ E+ A E+P A+TNILF
Sbjct: 297 VVDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGNARNLRGVEYVAAEKPAGAYTNILF 356
Query: 364 SSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGA 423
SSGTTGEPKAIPWTN +P K+AADAWCH+D+++ D+VAWPTNLGWMMGPWLVYASL+NGA
Sbjct: 357 SSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYASLINGA 416
Query: 424 SIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEAS 483
+ LYNGSPLG FAKFVQDA+V++LGV+PSIVRTW+++N GYDWS IRCFGSTGEAS
Sbjct: 417 CMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGSTGEAS 476
Query: 484 NVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG 543
N+DEYLWLMGRA YKPVIEYCGGTEIGG FI+GSLLQ QSLAAFST AMGCKLFIL D
Sbjct: 477 NIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFILDEDS 536
Query: 544 CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGG 603
PIP G+GELAL P +FGASSTLLN NH+ VYF GMP+ GQILRRHGD+FERTS G
Sbjct: 537 NPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFERTSKG 596
Query: 604 YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFK 663
YYRAHGRADDTMNLGGIKV S+EIER+CN+VD +VLETAAIGVPPP GGPEQL I VVFK
Sbjct: 597 YYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVIAVVFK 656
Query: 664 DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723
++ PDLN L+ SFNS +QKKLNPLFKVS VV LPSLPRTATNKVMRRVLR+QL Q
Sbjct: 657 SPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVLRQQLTQTG 716
Query: 724 QNSKL 728
NSKL
Sbjct: 717 LNSKL 721
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q84P17|AEE18_ARATH Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/728 (49%), Positives = 480/728 (65%), Gaps = 23/728 (3%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPA-TWQNITTH-ILSPDLPF 63
+K++ ++ D G+ + A++ + +++++ P W+ + +L P P
Sbjct: 2 WKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHPH 61
Query: 64 SFHQLLYYGCYKDF-----GPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISS 118
HQLLYY Y ++ GP P W P +K TN+GKL++ G LG YK+P+ S
Sbjct: 62 PLHQLLYYSVYSNWDSSVHGP-PLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 119 FSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNP 178
F F+ FSV +PEVYW V++E+S F PP+CIL + S P G WLP A +N
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILNK--------SKPEGTWLPDAVLNI 172
Query: 179 AKNCL--SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGS 236
A+ CL S + K+ D + + W +EG PV MT+KELR +V LVA A++ +KG
Sbjct: 173 AECCLMPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISG-SFEKGD 231
Query: 237 AIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGD 296
IAIDMPM V++V+IYLAI+LAG IVVSIADSFA+ EI+ RL+ISKAK IFTQD I+RG
Sbjct: 232 TIAIDMPMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGG 291
Query: 297 KSIPLY-RVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLK--ENEFAAVEQ 353
+ PLY RV++A IV+PA G+ ++LR+ D+SW+DFL + EN + +
Sbjct: 292 RRFPLYSRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYL 351
Query: 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW 413
PVE+ NILFSSGTTGEPKAIPWT +P ++A D W H+D++ WPTNLGW+MGP
Sbjct: 352 PVESVINILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPT 411
Query: 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 473
L+++ L GA++ALY+GSPLG GF KFVQDA VT+LG VPS+V+TWK TNC++G +W+ I
Sbjct: 412 LMFSCFLTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKI 471
Query: 474 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMG 533
+ F +TGEASNVD+ LWL +A YKPVIE CGGTE+ +I GS LQ Q+ AFSTP+M
Sbjct: 472 KFFATTGEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMT 531
Query: 534 CKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRH 593
++ I +G P P + P GE+ L P GA+ LLNANH +VYF GMP LRRH
Sbjct: 532 TRIIIFDENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRH 591
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653
GD+ +RT GGYY GRADDTMNLGGIK SS+EIER+C+ D + ETAA+ + PP+GGP
Sbjct: 592 GDIVKRTVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTPPNGGP 651
Query: 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 713
E L I V K+ + +L+M F+ +QK LNPLFKVS V +P PRTA++K++RR
Sbjct: 652 ELLVIFAVLKE-GFKQQSGEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASSKLLRR 710
Query: 714 VLRKQLAQ 721
VLR Q+ Q
Sbjct: 711 VLRDQIKQ 718
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May be involved in the peroxisomal activation of 2,4-dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|A7MPJ7|ACSA_CROS8 Acetyl-coenzyme A synthetase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 163/573 (28%), Positives = 257/573 (44%), Gaps = 47/573 (8%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + D I W EGD K ++ +EL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLSERGDQTAIIW--EGDDATQSKHISYRELHRDVCRFANTLT 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
+LG+ KG +AI MPM + V LA G + I F+ ++ R+ S A+ + T
Sbjct: 126 SLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSARLVIT 185
Query: 289 QDLIIRGDKSIPLYRVID------AQAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 341
D +R ++IPL + +D + V+ K + +++ +G D+ W + +++
Sbjct: 186 ADEGVRAGRAIPLKKNVDDALKNPGVTSVEHVVVFKRTGGNIEWHEGRDLWWSELVKKA- 244
Query: 342 KLKENEFAAVEQPVEAFTN----ILFSSGTTGEPKAIPWTNATPFKAAADAWCH-MDIRK 396
+A QPVE IL++SG+TG+PK + T AA + + D
Sbjct: 245 -------SAHHQPVEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFLYAFDYHP 297
Query: 397 ADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVV 452
DI ++GW+ G +L+Y L GA+ ++ G P + A+ V KV +L
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPSANRMAQVVDKHKVNILYTA 357
Query: 453 PSIVRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTE 508
P+ +R + IDG D SS+R GS GE N + + W + + PVI+ TE
Sbjct: 358 PTAIRALMAEGDKAIDGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVIDTWWQTE 417
Query: 509 IGGGFITGSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGAS 566
GG IT L A L A S P G + ++ N+G PQ G L ++ G +
Sbjct: 418 TGGFMIT-PLPGATELKAGSATRPFFGVQPALVDNEGN--PQQGATEGNLVITDSWPGQA 474
Query: 567 STLLNANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSS 624
TL + YFS + + GD R GYY GR DD +N+ G ++ +
Sbjct: 475 RTLFGDHERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529
Query: 625 VEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQ 684
EIE + + E A +G+P G V + N+ +L + V+
Sbjct: 530 AEIESALVS-HPKIAEAAVVGIPHSIKGQAIYAYVTL----NHGEEPSAELYSEVRNWVR 584
Query: 685 KKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
K++ PL + SLP+T + K+MRR+LRK
Sbjct: 585 KEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
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Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Cronobacter sakazakii (strain ATCC BAA-894) (taxid: 290339) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27550|ACSA_ECOLI Acetyl-coenzyme A synthetase OS=Escherichia coli (strain K12) GN=acs PE=1 SV=2 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 161/569 (28%), Positives = 257/569 (45%), Gaps = 39/569 (6%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + + + D I W EGD K ++ KEL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIW--EGDDASQSKHISYKELHRDVCRFANTLL 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
LG+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T
Sbjct: 126 ELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVIT 185
Query: 289 QDLIIRGDKSIPLYRVIDAQ------APLAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 341
D +R +SIPL + +D + V+ K + + ++G D+ W D +E+
Sbjct: 186 SDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDLVEQAS 245
Query: 342 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIV 400
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 246 DQHQAEEMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIY 301
Query: 401 AWPTNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIV 456
++GW+ G +L+Y L GA+ ++ G P + A+ V +V +L P+ +
Sbjct: 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTAI 361
Query: 457 RTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGG 512
R + I+G D SS+R GS GE N + + W + + PV++ TE GG
Sbjct: 362 RALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGF 421
Query: 513 FITGSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 570
IT L A L A S P G + ++ N+G P+ G L ++ G + TL
Sbjct: 422 MIT-PLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATE--GSLVITDSWPGQARTLF 478
Query: 571 NANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 628
+ YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 479 GDHERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 629 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN 688
A + E A +G+P G V + +P +L + V+K++
Sbjct: 534 SALVA-HPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIG 588
Query: 689 PLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
PL + SLP+T + K+MRR+LRK
Sbjct: 589 PLATPDVLHWTDSLPKTRSGKIMRRILRK 617
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Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Escherichia coli (strain K12) (taxid: 83333) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8FAY8|ACSA_ECOL6 Acetyl-coenzyme A synthetase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 161/569 (28%), Positives = 257/569 (45%), Gaps = 39/569 (6%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + + + D I W EGD K ++ KEL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIW--EGDDASQSKHISYKELHRDVCRFANTLL 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
LG+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T
Sbjct: 126 ELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT 185
Query: 289 QDLIIRGDKSIPLYRVIDAQ------APLAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 341
D +R +SIPL + +D + V+ K + + ++G D+ W D +E+
Sbjct: 186 SDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDLVEQAS 245
Query: 342 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIV 400
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 246 AQHQAEEMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIY 301
Query: 401 AWPTNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIV 456
++GW+ G +L+Y L GA+ ++ G P + A+ V +V +L P+ +
Sbjct: 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTAI 361
Query: 457 RTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGG 512
R + I+G D SS+R GS GE N + + W + + PV++ TE GG
Sbjct: 362 RALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGF 421
Query: 513 FITGSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 570
IT L A L A S P G + ++ N+G P+ G L ++ G + TL
Sbjct: 422 MIT-PLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATE--GSLVITDSWPGQARTLF 478
Query: 571 NANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 628
+ YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 479 GDHERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 629 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN 688
A + E A +G+P G V + +P +L + V+K++
Sbjct: 534 SALVA-HPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIG 588
Query: 689 PLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
PL + SLP+T + K+MRR+LRK
Sbjct: 589 PLATPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8Z1R0|ACSA_SALTI Acetyl-coenzyme A synthetase OS=Salmonella typhi GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 174/626 (27%), Positives = 278/626 (44%), Gaps = 47/626 (7%)
Query: 120 SNFQEFSVSNPEVY---WKTVLNEMSTSFSVPPQCILRENP--NGENHLSNPGG---QWL 171
+N + + NPE Y +K +N+ T + + + P +N PG +W
Sbjct: 11 ANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 172 PGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
+N A NCL + + + D I W EGD K ++ +EL +V A L LG
Sbjct: 71 EDGTLNLAANCLDRHLQENGDRTAIIW--EGDDASQSKHISYRELHRDVCRFANTLLDLG 128
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG +AI MPM + V LA G + I F+ I+ R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAIAGRIIDSSSRLVITADE 188
Query: 292 IIRGDKSIPLYRVIDAQ------APLAIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLK 344
+R +SIPL + +D + VI K + + ++G D+ W D +E+
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGNDIDWQEGRDLWWRDLIEKASPEH 248
Query: 345 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWP 403
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 249 QPEAMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304
Query: 404 TNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTW 459
++GW+ G +L+Y L GA+ ++ G P + + V +V +L P+ +R
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 460 --KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGGFIT 515
+ I+G D SS+R GS GE N + + W + + PV++ TE GG IT
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424
Query: 516 GSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 573
L A L A S P G + ++ N+G PQ G L ++ G + TL +
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLFGDH 481
Query: 574 HY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 631
YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 482 ERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 632 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 691
A + E A +G+P G V + +P +L + V+K++ PL
Sbjct: 537 VA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIGPLA 591
Query: 692 KVSHVVPLPSLPRTATNKVMRRVLRK 717
+ SLP+T + K+MRR+LRK
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Salmonella typhi (taxid: 90370) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q88EH6|ACSA1_PSEPK Acetyl-coenzyme A synthetase 1 OS=Pseudomonas putida (strain KT2440) GN=acsA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 169/621 (27%), Positives = 277/621 (44%), Gaps = 45/621 (7%)
Query: 117 SSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFV 176
+++ + SV NP+ +W+ + + P +++ ++H+ +W +
Sbjct: 22 ATYKAMYQQSVINPDGFWREQAQRIDW---IKPFTKVKQTSFDDHHVDI---KWFADGTL 75
Query: 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGS 236
N + NCL + + D + I W EGD +++T +EL +V A AL + +G
Sbjct: 76 NVSSNCLDRHLEERGDQLAIIW--EGDDPSEHRNITYRELHEQVCKFANALRGQDVHRGD 133
Query: 237 AIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGD 296
+ I MPM +VV LA G I + F+ ++ R+ K+K + T D +RG
Sbjct: 134 VVTIYMPMIPEAVVAMLACARIGAIHSVVFGGFSPEALAGRIIDCKSKVVITADEGVRGG 193
Query: 297 KSIPLYRVIDAQAPLAIVIPAKGSSFSM---KLRDGDISWLD----FLERVRKLKENEFA 349
+ PL +D LA+ P S + K GDI+W + E + K+ + A
Sbjct: 194 RRTPLKANVD----LALTNPETSSVQKIIVCKRTGGDIAWHQHRDIWYEDLMKVASSHCA 249
Query: 350 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWPTNLGW 408
E E IL++SG+TG+PK + T AA + D R ++ ++GW
Sbjct: 250 PKEMGAEEALFILYTSGSTGKPKGVLHTTGGYLVYAALTHERVFDYRPGEVYWCTADVGW 309
Query: 409 MMG-PWLVYASLLNGASIALYNGSPLG---SGFAKFVQDAKVTMLGVVPSIVRTWKSTN- 463
+ G ++VY L NGA+ L+ G P + +K V KV +L P+ +R +
Sbjct: 310 VTGHSYIVYGPLANGATTLLFEGVPNYPDITRVSKIVDKHKVNILYTAPTAIRAMMAEGQ 369
Query: 464 -CIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGGFITGSLLQ 520
++G D SS+R GS GE N + + W + P+++ TE GG I+ L
Sbjct: 370 AAVEGADGSSLRLLGSVGEPINPEAWNWYYKTVGKERCPIVDTWWQTETGGILIS-PLPG 428
Query: 521 AQSL--AAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL--NANHYD 576
A L + + P G ++ N G I + G L + G S +L + D
Sbjct: 429 ATGLKPGSATRPFFGVVPALVDNLGNLI--DGAAEGNLVILDSWPGQSRSLYGDHDRFVD 486
Query: 577 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 636
YF + + + GD R GYY GR DD +N+ G ++ + EIE A S
Sbjct: 487 TYF-----KTFRGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRMGTAEIESAMVA-HS 540
Query: 637 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHV 696
V E A +GVP G + V+ N QLR+ + V+K++ P+ +
Sbjct: 541 KVAEAAVVGVPHDIKGQG----IYVYVTLNAGIEASEQLRLELKNWVRKEIGPIASPDVI 596
Query: 697 VPLPSLPRTATNKVMRRVLRK 717
P LP+T + K+MRR+LRK
Sbjct: 597 QWAPGLPKTRSGKIMRRILRK 617
|
Pseudomonas putida (strain KT2440) (taxid: 160488) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A8AN29|ACSA_CITK8 Acetyl-coenzyme A synthetase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 172/626 (27%), Positives = 279/626 (44%), Gaps = 47/626 (7%)
Query: 120 SNFQEFSVSNPEVY---WKTVLNEMSTSFSVPPQCILRENP--NGENHLSNPGG---QWL 171
+N + + NPE Y ++ +NE T + + + P +N PG +W
Sbjct: 11 ANIADRCLINPEQYEAKYQQSINEPDTFWGEQGKILDWITPYKKVKNTSFAPGNVSIKWY 70
Query: 172 PGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
+N A NCL + + + D I W EGD K ++ +EL +V A L LG
Sbjct: 71 EDGTLNLAANCLDRHLQENGDRTAIIW--EGDDATQSKHISYRELHRDVCRFANTLLELG 128
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 292 IIRGDKSIPLYRVIDAQAP------LAIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLK 344
+R + IPL + +D + V+ K + + +G D+ W D +E+
Sbjct: 189 GVRAGRGIPLKKNVDDALKNPNVNSVEHVVVLKRTGGKVDWHEGRDLWWSDVIEKSSADH 248
Query: 345 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPT 404
+ E E P+ IL++SG+TG+PK + T AA + ++ D + W T
Sbjct: 249 QPEEMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPDDIYWCT 304
Query: 405 -NLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTW 459
++GW+ G +L+Y L GA+ ++ G P + A+ V +VT+L P+ +R
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVTILYTAPTAIRAL 364
Query: 460 --KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGGFIT 515
+ I+G D SS+R GS GE N + + W + + PV++ TE GG IT
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGFMIT 424
Query: 516 GSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 573
L A L A S P G + ++ N+G PQ G L ++ G + TL +
Sbjct: 425 -PLPGATELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLFGDH 481
Query: 574 HY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 631
YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 482 ERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 632 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 691
+ E A +G+P G V + + +P +L + V+K++ PL
Sbjct: 537 -VSHPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEDPSP----ELYTEVRNWVRKEIGPLA 591
Query: 692 KVSHVVPLPSLPRTATNKVMRRVLRK 717
+ SLP+T + K+MRR+LRK
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8ZKF6|ACSA_SALTY Acetyl-coenzyme A synthetase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=acs PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 173/626 (27%), Positives = 278/626 (44%), Gaps = 47/626 (7%)
Query: 120 SNFQEFSVSNPEVY---WKTVLNEMSTSFSVPPQCILRENP--NGENHLSNPGG---QWL 171
+N + + NPE Y +K +N+ T + + + P +N PG +W
Sbjct: 11 ANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 172 PGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
+N A NCL + + + D I W EGD K ++ +EL +V A L LG
Sbjct: 71 EDGTLNLAANCLDRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLLDLG 128
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 292 IIRGDKSIPLYRVIDAQ------APLAIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLK 344
+R +SIPL + +D + VI K + + ++G D+ W D +E+
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 345 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWP 403
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 249 QPEAMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304
Query: 404 TNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTW 459
++GW+ G +L+Y L GA+ ++ G P + + V +V +L P+ +R
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 460 --KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGGFIT 515
+ I+G D SS+R GS GE N + + W + + PV++ TE GG IT
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424
Query: 516 GSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 573
L A L A S P G + ++ N+G PQ G L ++ G + TL +
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLFGDH 481
Query: 574 HY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 631
YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 482 ERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 632 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 691
A + E A +G+P G V + +P +L + V+K++ PL
Sbjct: 537 VA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIGPLA 591
Query: 692 KVSHVVPLPSLPRTATNKVMRRVLRK 717
+ SLP+T + K+MRR+LRK
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8X5T5|ACSA_ECO57 Acetyl-coenzyme A synthetase OS=Escherichia coli O157:H7 GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 160/569 (28%), Positives = 256/569 (44%), Gaps = 39/569 (6%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + + + D I W EGD K ++ KEL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIW--EGDDASQSKHISYKELHRDVCRFANTLL 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
LG+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T
Sbjct: 126 KLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVIT 185
Query: 289 QDLIIRGDKSIPLYRVIDAQ------APLAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 341
D +R +SIPL + +D + V+ K + + ++G D+ W D +E+
Sbjct: 186 SDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDQVEQAS 245
Query: 342 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIV 400
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 246 DQHQAEEMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIY 301
Query: 401 AWPTNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIV 456
++GW+ G +L+Y L GA+ ++ G P + A+ V +V +L P+ +
Sbjct: 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTAI 361
Query: 457 RTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCGGTEIGGG 512
R + I+G D SS+R GS GE N + + W + + PV++ TE GG
Sbjct: 362 RALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGF 421
Query: 513 FITGSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 570
IT L A L A S P G + ++ N+G P+ G L ++ G + TL
Sbjct: 422 MIT-PLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATE--GSLVITDSWPGQARTLF 478
Query: 571 NANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 628
+ YFS + + GD R YY GR DD +N+ G ++ + EIE
Sbjct: 479 GDHERFEQTYFSTFKN-----MYFSGDGARRDEDSYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 629 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN 688
A + E A +G+P G V + +P +L + V+K++
Sbjct: 534 SALVA-HPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIG 588
Query: 689 PLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
PL + SLP+T + K+MRR+LRK
Sbjct: 589 PLATPDVLHWTDSLPKTRSGKIMRRILRK 617
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Escherichia coli O157:H7 (taxid: 83334) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 728 | ||||||
| 225455790 | 726 | PREDICTED: acetyl-coenzyme A synthetase- | 0.991 | 0.994 | 0.789 | 0.0 | |
| 380042384 | 757 | acyl-activating enzyme 12 [Cannabis sati | 0.991 | 0.953 | 0.779 | 0.0 | |
| 255541886 | 722 | acetyl-CoA synthetase, putative [Ricinus | 0.987 | 0.995 | 0.785 | 0.0 | |
| 356567690 | 727 | PREDICTED: acetyl-coenzyme A synthetase- | 0.993 | 0.994 | 0.769 | 0.0 | |
| 356556613 | 744 | PREDICTED: acetyl-coenzyme A synthetase- | 0.993 | 0.971 | 0.767 | 0.0 | |
| 224130076 | 663 | predicted protein [Populus trichocarpa] | 0.907 | 0.996 | 0.825 | 0.0 | |
| 297734139 | 662 | unnamed protein product [Vitis vinifera] | 0.907 | 0.998 | 0.808 | 0.0 | |
| 449440895 | 725 | PREDICTED: probable acyl-activating enzy | 0.993 | 0.997 | 0.746 | 0.0 | |
| 380042362 | 720 | acyl-activating enzyme 1 [Cannabis sativ | 0.980 | 0.991 | 0.711 | 0.0 | |
| 297812451 | 721 | acyl-activating enzyme 17 [Arabidopsis l | 0.984 | 0.994 | 0.725 | 0.0 |
| >gi|225455790|ref|XP_002270918.1| PREDICTED: acetyl-coenzyme A synthetase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1207 bits (3123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/723 (78%), Positives = 643/723 (88%), Gaps = 1/723 (0%)
Query: 7 KALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSFH 66
K LD ITS DI ALGIPS+ AE+LH+ L +I+ + GAATP TW I+ +L+PDLP+S H
Sbjct: 4 KTLDSITSQDIAALGIPSEEAEKLHQTLLQIITSCGAATPQTWSRISKELLNPDLPYSLH 63
Query: 67 QLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFS 126
Q++YYGCY FGPDPPAW+PDPE +TNVG+LL+ RG+EFLGS YKDPISSFS+FQ+FS
Sbjct: 64 QMMYYGCYSHFGPDPPAWLPDPENVMLTNVGQLLERRGKEFLGSRYKDPISSFSDFQKFS 123
Query: 127 VSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVN 186
VSNPEVYWKTVL+E+S SFSVPPQC+L +NP+ EN LS PGGQWLPGAF+NPA+NCLSVN
Sbjct: 124 VSNPEVYWKTVLDELSISFSVPPQCVLYDNPSRENGLSYPGGQWLPGAFINPARNCLSVN 183
Query: 187 SKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV 246
KR+LDD V+ W DEGD G+P+ MTL+ELR EVW VAYAL+ LGL+KGSAIAIDMPMN
Sbjct: 184 DKRTLDDTVVIWHDEGDDGMPINRMTLEELRREVWSVAYALDTLGLEKGSAIAIDMPMNA 243
Query: 247 NSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVI 305
+SVVIYLAIVLAGYIVVSIADSFAS EIS RL+IS AKAIFTQD IIRGDKS+PLY RV+
Sbjct: 244 SSVVIYLAIVLAGYIVVSIADSFASREISTRLKISNAKAIFTQDFIIRGDKSLPLYSRVV 303
Query: 306 DAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSS 365
DAQ+P AIVIPA GSSFSMKLRDGD+SW DFL+R +++EFAA+EQP+EAF NILFSS
Sbjct: 304 DAQSPTAIVIPAGGSSFSMKLRDGDMSWHDFLQRAINSRDDEFAAIEQPIEAFMNILFSS 363
Query: 366 GTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASI 425
GTTGEPKAIPWTNATP KAAADAWCHMDIRK DIVAWPTNLGWMMGPWLVYASLLNGA+I
Sbjct: 364 GTTGEPKAIPWTNATPLKAAADAWCHMDIRKGDIVAWPTNLGWMMGPWLVYASLLNGATI 423
Query: 426 ALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV 485
ALYNG+PLGSGFAKFVQDAKVTMLGV+PSIVRTWKSTNC G DWSSIRCF STGEAS+V
Sbjct: 424 ALYNGAPLGSGFAKFVQDAKVTMLGVIPSIVRTWKSTNCTAGLDWSSIRCFASTGEASSV 483
Query: 486 DEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCP 545
DEYLWLMGRA YKP+IEYCGGTEIGGGF+TGSLLQAQSLA+FSTPAMGC LFI+G+DG
Sbjct: 484 DEYLWLMGRAQYKPIIEYCGGTEIGGGFVTGSLLQAQSLASFSTPAMGCSLFIIGDDGNL 543
Query: 546 IPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYY 605
+PQ+ GMGELAL PL+FGAS+TLLNA+HYDVYF GMP NG++LRRHGDVFERTS GYY
Sbjct: 544 LPQDASGMGELALGPLMFGASTTLLNADHYDVYFKGMPIWNGKVLRRHGDVFERTSRGYY 603
Query: 606 RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS 665
RAHGRADDTMN+GGIKVSSVEIERICN V S+VLETAAIG+PPP GGPE+L IVVVFKDS
Sbjct: 604 RAHGRADDTMNIGGIKVSSVEIERICNTVHSSVLETAAIGMPPPAGGPERLMIVVVFKDS 663
Query: 666 NYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 725
N + PDLN+LR++FNS VQKKLNPLF+VSH VP+PSLPRTATNKVMRRVLR+QLAQL
Sbjct: 664 NNSIPDLNELRIAFNSEVQKKLNPLFRVSHTVPVPSLPRTATNKVMRRVLRQQLAQLSST 723
Query: 726 SKL 728
SK
Sbjct: 724 SKF 726
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042384|gb|AFD33356.1| acyl-activating enzyme 12 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1185 bits (3066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/724 (77%), Positives = 637/724 (87%), Gaps = 2/724 (0%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSF 65
+K+LD +TS DI ALGI +LA LH +LAEIV+ HG+ATP TW+ I++H+LSPDLPFS
Sbjct: 35 FKSLDSVTSSDIAALGIEPQLAHSLHGRLAEIVSNHGSATPHTWRCISSHLLSPDLPFSL 94
Query: 66 HQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEF 125
HQ+LYYGCYKDFGPDPPAWIPD E A TNVGKLL+ RG+EFLG YKDPIS+FS+FQEF
Sbjct: 95 HQMLYYGCYKDFGPDPPAWIPDAENAISTNVGKLLEKRGKEFLGVKYKDPISNFSDFQEF 154
Query: 126 SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSV 185
SV+NPEVYW+T+L+EM+ SFS PP+CILREN + + + NPGG+WLPGAF+NPAKNCL +
Sbjct: 155 SVTNPEVYWRTILDEMNISFSKPPECILRENFSRDGQILNPGGEWLPGAFINPAKNCLDL 214
Query: 186 NSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
N K SLDD +I W DEG LPV MTLKELR+EVWLVAYAL L L+ GSAIAIDMPMN
Sbjct: 215 NCK-SLDDTMILWRDEGKDDLPVNKMTLKELRSEVWLVAYALKELELEGGSAIAIDMPMN 273
Query: 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RV 304
V+SVVIYLAIVLAGY+VVSIADSFA+ EIS RL+ISKAKAIFTQDLI+RG+K+IPLY R+
Sbjct: 274 VHSVVIYLAIVLAGYVVVSIADSFAAPEISTRLKISKAKAIFTQDLIVRGEKTIPLYSRI 333
Query: 305 IDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFS 364
++AQ+PLAIVIP+KG S S +LR GD+SW DFL R K K EFAAVEQP++A+TNILFS
Sbjct: 334 VEAQSPLAIVIPSKGFSVSAQLRHGDVSWHDFLNRANKFKNYEFAAVEQPIDAYTNILFS 393
Query: 365 SGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS 424
SGTTGEPKAIPWT ATPFKAAADAWCHMDI+K D+VAWPTNLGWMMGPWLVYASLLNGAS
Sbjct: 394 SGTTGEPKAIPWTQATPFKAAADAWCHMDIQKGDVVAWPTNLGWMMGPWLVYASLLNGAS 453
Query: 425 IALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 484
IALYNGSPLGSGFAKFVQDAKVTMLGV+PSIVRTWKSTNC+ GYDWS+IRCF STGEASN
Sbjct: 454 IALYNGSPLGSGFAKFVQDAKVTMLGVIPSIVRTWKSTNCVAGYDWSTIRCFSSTGEASN 513
Query: 485 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC 544
+DEYLWLMGRA YKPVIEYCGGTEIGGGF+TGSLLQAQSLAAFSTPAMGC LFILG+DG
Sbjct: 514 IDEYLWLMGRAYYKPVIEYCGGTEIGGGFVTGSLLQAQSLAAFSTPAMGCSLFILGSDGY 573
Query: 545 PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGY 604
PIP++ PG+GELAL PL+FGAS TLLNA+HYDVYF MPS NG++LRRHGD+FE TS GY
Sbjct: 574 PIPKHKPGIGELALGPLMFGASKTLLNADHYDVYFKRMPSLNGKVLRRHGDMFELTSKGY 633
Query: 605 YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 664
Y AHGRADDTMNLGGIKVSSVEIERICN D VLETAAIGVPP GGPEQL I VV K+
Sbjct: 634 YHAHGRADDTMNLGGIKVSSVEIERICNEADEKVLETAAIGVPPLAGGPEQLVIAVVLKN 693
Query: 665 SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724
S+ T DLNQLR+SFNSAVQKKLNPLF+VS VVPL SLPRTATNKVMRR+LR+Q QLD+
Sbjct: 694 SDRTTVDLNQLRLSFNSAVQKKLNPLFRVSRVVPLSSLPRTATNKVMRRILRQQFTQLDK 753
Query: 725 NSKL 728
+SK+
Sbjct: 754 SSKI 757
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541886|ref|XP_002512007.1| acetyl-CoA synthetase, putative [Ricinus communis] gi|223549187|gb|EEF50676.1| acetyl-CoA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1176 bits (3043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/724 (78%), Positives = 636/724 (87%), Gaps = 5/724 (0%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSF 65
YK+LD I+ DI+ALGI S AE+L +++++I+ +GAATP TW I+ +L+PDLPFSF
Sbjct: 3 YKSLDAISVSDIQALGIASPAAEKLFKEISDIITHYGAATPQTWSRISKRLLNPDLPFSF 62
Query: 66 HQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEF 125
HQ++YYGCYKDFGPDPPAW+PDP+ A TNV KLL+ RG EFLGS Y DPISSFS FQEF
Sbjct: 63 HQIMYYGCYKDFGPDPPAWLPDPKTAGFTNVWKLLEKRGYEFLGSNYLDPISSFSAFQEF 122
Query: 126 SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSV 185
SVSNPEVYWKTVL+EMS SFSVPPQCILRE ++ LSNPGGQWLPGA +NPAKNCLS+
Sbjct: 123 SVSNPEVYWKTVLDEMSVSFSVPPQCILRE----DSPLSNPGGQWLPGAHLNPAKNCLSL 178
Query: 186 NSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
NS+ S +D+ I W DEG LPV MTL+ELR EVW VAYALNALGLD+G+AIAI+MPMN
Sbjct: 179 NSESSSNDVAITWRDEGSDHLPVSCMTLEELRTEVWSVAYALNALGLDRGAAIAINMPMN 238
Query: 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RV 304
V SV+IYLAIVLAGY+VVSIADSFA +EIS RL+IS+AKAIFTQDLIIRG+KSIPLY RV
Sbjct: 239 VKSVIIYLAIVLAGYVVVSIADSFAPVEISTRLKISQAKAIFTQDLIIRGEKSIPLYSRV 298
Query: 305 IDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFS 364
+DAQ+P+AIVIP KGS+FSMKLRDGDISW DFLERV L+ NEFAAVEQPVEA+TNILFS
Sbjct: 299 VDAQSPMAIVIPTKGSNFSMKLRDGDISWRDFLERVNNLRGNEFAAVEQPVEAYTNILFS 358
Query: 365 SGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS 424
SGTTGEPKAIPW NATP KAAADAWCHMDIRK DIVAWPTNLGWMMGPWLVYASLLNGA
Sbjct: 359 SGTTGEPKAIPWINATPLKAAADAWCHMDIRKGDIVAWPTNLGWMMGPWLVYASLLNGAC 418
Query: 425 IALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 484
IALYNGSP+GSGFAKFVQDAKVT+LGV+PSIVRTWKSTNC GYDWS+IRCFGSTGEASN
Sbjct: 419 IALYNGSPIGSGFAKFVQDAKVTILGVIPSIVRTWKSTNCTAGYDWSAIRCFGSTGEASN 478
Query: 485 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC 544
VDEYLWLMGRA YKP+IEYCGGTEIGG FITGSLLQ QSLAAFSTP MGC LFILGNDG
Sbjct: 479 VDEYLWLMGRAHYKPIIEYCGGTEIGGAFITGSLLQPQSLAAFSTPTMGCSLFILGNDGY 538
Query: 545 PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGY 604
PIP NVPGMGELAL L+FGASS+LLN +HY VY+ GMP NG+ILRRHGDVFERTS GY
Sbjct: 539 PIPHNVPGMGELALGSLMFGASSSLLNGDHYKVYYKGMPVWNGKILRRHGDVFERTSRGY 598
Query: 605 YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 664
Y AHGRADDTMNLGGIKVSSVE+ER+CNA DS++LETAAIGVPPP GGPE+L I VVFK
Sbjct: 599 YHAHGRADDTMNLGGIKVSSVELERLCNAADSSILETAAIGVPPPQGGPERLVIAVVFKH 658
Query: 665 SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724
+ + PDL +L+ SFNS VQKKLNPLF+VS VVPLPSLPRTATNKVMRR+LR++ Q +Q
Sbjct: 659 PDNSTPDLEELKKSFNSVVQKKLNPLFRVSRVVPLPSLPRTATNKVMRRILRQRFVQREQ 718
Query: 725 NSKL 728
NSKL
Sbjct: 719 NSKL 722
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567690|ref|XP_003552050.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1174 bits (3038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/724 (76%), Positives = 634/724 (87%), Gaps = 1/724 (0%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSF 65
YK+L IT DIE+ GI + A LH LAEI+ THG TPATWQ+++ IL+P+LPFSF
Sbjct: 4 YKSLSSITVSDIESHGIAREDAATLHHGLAEIIETHGNGTPATWQHVSNSILNPELPFSF 63
Query: 66 HQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEF 125
HQ+LYYGCYKD+G DPPAWIPDPE+A +TNV KLL+ +GEEFL S YKDPI+SF +FQ+F
Sbjct: 64 HQMLYYGCYKDYGSDPPAWIPDPESAALTNVWKLLERKGEEFLCSAYKDPITSFDDFQKF 123
Query: 126 SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSV 185
SVSNPE+YWK VL+EMS SFS PP+CILR++P+GE+ LS+P GQWLPGA +NPA+NCL+V
Sbjct: 124 SVSNPEIYWKCVLDEMSISFSKPPECILRDSPSGESPLSHPSGQWLPGASINPAQNCLNV 183
Query: 186 NSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
N KRSL+D VI W DE LP++ MTL+ELR EVWLVAYAL +LGL+KGSAIAIDMPMN
Sbjct: 184 NGKRSLNDTVIIWRDEQLDDLPLQRMTLEELRDEVWLVAYALKSLGLEKGSAIAIDMPMN 243
Query: 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RV 304
V SVVIYLAIVLA Y+VVSIADSFA+ EIS RL+ISKAK IFTQDLI+RGDKSIPLY RV
Sbjct: 244 VKSVVIYLAIVLASYVVVSIADSFAASEISTRLKISKAKVIFTQDLIMRGDKSIPLYSRV 303
Query: 305 IDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFS 364
+DAQ+P+A+VIP KGS FSMKLR+GD+SW DFLE+V LK EF A EQP+E FTNILFS
Sbjct: 304 VDAQSPMAVVIPTKGSEFSMKLRNGDVSWHDFLEKVNNLKGKEFIATEQPIETFTNILFS 363
Query: 365 SGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS 424
SGTTG+PKAIPWTN TP KAAADAWCHMD+RK D+V WPTNLGWMMGPWLVYASLLNGAS
Sbjct: 364 SGTTGDPKAIPWTNITPLKAAADAWCHMDVRKGDVVCWPTNLGWMMGPWLVYASLLNGAS 423
Query: 425 IALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 484
+ALY GSPLGS FAKFVQDAKVTMLGV+PSIVR+W+STN GYDWSSIRCFGSTGEASN
Sbjct: 424 VALYIGSPLGSAFAKFVQDAKVTMLGVIPSIVRSWRSTNSTSGYDWSSIRCFGSTGEASN 483
Query: 485 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC 544
VDEYLWLMGRALYKP+IEYCGGTEIGGGF+ GSLLQAQSLAAFSTPAM C LFIL ++G
Sbjct: 484 VDEYLWLMGRALYKPIIEYCGGTEIGGGFVCGSLLQAQSLAAFSTPAMCCSLFILDDEGL 543
Query: 545 PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGY 604
PIPQNVPG+GELAL PL+ GAS+TLLNA+HY VYF GMP NG++LRRHGDVFERT+ GY
Sbjct: 544 PIPQNVPGIGELALGPLMLGASNTLLNADHYGVYFKGMPLLNGKVLRRHGDVFERTARGY 603
Query: 605 YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 664
Y AHGR+DDTMNLGGIKVSSVEIERICN VDS++LETAAIGVPP GGPE LTI VVFKD
Sbjct: 604 YHAHGRSDDTMNLGGIKVSSVEIERICNGVDSSILETAAIGVPPSGGGPELLTIAVVFKD 663
Query: 665 SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724
SN T DL+QLRMSFNSA+QKKLNPLF+VS VV LPSLPRTA+NKVMRRVLR+QL++ +Q
Sbjct: 664 SNSTKQDLHQLRMSFNSALQKKLNPLFRVSQVVTLPSLPRTASNKVMRRVLRQQLSETNQ 723
Query: 725 NSKL 728
NSK+
Sbjct: 724 NSKI 727
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556613|ref|XP_003546618.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1173 bits (3034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/724 (76%), Positives = 635/724 (87%), Gaps = 1/724 (0%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSF 65
YK+L IT DIE+ GI + A LH+ LAEI+ TH TPATWQ+++ IL+P+LPFSF
Sbjct: 21 YKSLSSITVSDIESHGIAREDAATLHQGLAEIIETHSNGTPATWQHVSNSILNPELPFSF 80
Query: 66 HQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEF 125
HQ+LYYGCYKD+GPDPPAWIP+ E+A +TNV +LL+ +GEEFLGS YKDPI+SF +FQ+F
Sbjct: 81 HQMLYYGCYKDYGPDPPAWIPNRESAALTNVWQLLERKGEEFLGSAYKDPITSFDDFQKF 140
Query: 126 SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSV 185
SVSNPE+YWK V +EMS SFS PP+CILR++P+GE+ LS+P GQWLPGA +NPA+NCL+V
Sbjct: 141 SVSNPEIYWKCVWDEMSISFSKPPECILRDSPSGESPLSHPSGQWLPGASINPAQNCLNV 200
Query: 186 NSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
N KRSL+D VI W DE LP + MTL+ELR EVWLVAYAL +LGL+KGSAIAIDMPMN
Sbjct: 201 NGKRSLNDTVIIWRDEQHDDLPRQRMTLEELREEVWLVAYALQSLGLEKGSAIAIDMPMN 260
Query: 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RV 304
V SVVIYLAIVLA Y+VVSIADSFA+ EIS RL+ISKAK IFTQDLI+RGDKSIPLY RV
Sbjct: 261 VKSVVIYLAIVLASYVVVSIADSFAASEISTRLKISKAKVIFTQDLIMRGDKSIPLYSRV 320
Query: 305 IDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFS 364
+DAQ+P+A+VIPAKGS FSMKLR+GD+SW DFLE+V LK EF A EQP+E FTNILFS
Sbjct: 321 VDAQSPMAVVIPAKGSEFSMKLRNGDLSWHDFLEKVNNLKGKEFIATEQPIETFTNILFS 380
Query: 365 SGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS 424
SGTTG+PKAIPWTN TP KAAADAWCHMD+RK D+V WPTNLGWMMGPWLVYASLLNGAS
Sbjct: 381 SGTTGDPKAIPWTNITPLKAAADAWCHMDVRKGDVVCWPTNLGWMMGPWLVYASLLNGAS 440
Query: 425 IALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 484
+ALY GSPLGSGFAKFVQDAKVTMLGV+PSIVR+W+STN GYDWSSIRCFGSTGEASN
Sbjct: 441 MALYIGSPLGSGFAKFVQDAKVTMLGVIPSIVRSWRSTNSTSGYDWSSIRCFGSTGEASN 500
Query: 485 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC 544
VDEYLWLMGRALYKP+IEYCGGTEIGGGF+ GSLLQAQSLAAFSTPAM C LFIL ++G
Sbjct: 501 VDEYLWLMGRALYKPIIEYCGGTEIGGGFVCGSLLQAQSLAAFSTPAMCCSLFILDDEGL 560
Query: 545 PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGY 604
PIPQNVPG+GELAL PL+ GAS+TLLNA+HY VYF GMP NG++LRRHGDVFERT+ GY
Sbjct: 561 PIPQNVPGIGELALGPLMLGASNTLLNADHYGVYFKGMPLLNGKVLRRHGDVFERTAKGY 620
Query: 605 YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 664
Y AHGR+DDTMNLGGIKVSSVEIERICN VDS++LETAAIGVPP GGPE LTI VVFKD
Sbjct: 621 YHAHGRSDDTMNLGGIKVSSVEIERICNGVDSSILETAAIGVPPSGGGPELLTIAVVFKD 680
Query: 665 SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724
SN T DL+QLRMSFNSA+QKKLNPLF+VS VV LPSLPRTA+NKVMRRVLR+QL++ +Q
Sbjct: 681 SNSTNQDLHQLRMSFNSALQKKLNPLFRVSQVVTLPSLPRTASNKVMRRVLRQQLSETNQ 740
Query: 725 NSKL 728
NSK+
Sbjct: 741 NSKI 744
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130076|ref|XP_002328648.1| predicted protein [Populus trichocarpa] gi|222838824|gb|EEE77175.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1148 bits (2969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/663 (82%), Positives = 605/663 (91%), Gaps = 2/663 (0%)
Query: 68 LLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSV 127
++YYGC+KDFGPDPPAW PDPEAA +TNVG+LL+ RG+EFLGS YKDPISSFSNFQEFSV
Sbjct: 1 MMYYGCFKDFGPDPPAWSPDPEAAMLTNVGQLLERRGKEFLGSAYKDPISSFSNFQEFSV 60
Query: 128 SNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNS 187
SNPEVYWKT+L+EMS SFSVPPQCIL EN + E+ L+NPGGQWLPGA+VNPAK CL++N
Sbjct: 61 SNPEVYWKTILDEMSISFSVPPQCILSENTSRESSLANPGGQWLPGAYVNPAKTCLTLNC 120
Query: 188 KRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWL-VAYALNALGLDKGSAIAIDMPMNV 246
KR+LDD+VIRW DEG+ +PV S+TL+ELR+EVW VAYALNALGLD+GSAIAIDMPMNV
Sbjct: 121 KRNLDDVVIRWRDEGNDDMPVSSLTLEELRSEVWYAVAYALNALGLDRGSAIAIDMPMNV 180
Query: 247 NSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVI 305
SV+IYLAIVLAG++VVSIADSFA LEIS RL+IS+AKAIFTQDLIIRGDKSIPLY RV+
Sbjct: 181 ESVIIYLAIVLAGHVVVSIADSFAPLEISTRLKISEAKAIFTQDLIIRGDKSIPLYSRVV 240
Query: 306 DAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSS 365
AQAP+AIV+P KG SFSM LRDGDISW DFLE+ L+ +EFAAVEQPVEAFTNILFSS
Sbjct: 241 HAQAPMAIVLPTKGCSFSMNLRDGDISWHDFLEKATDLRGDEFAAVEQPVEAFTNILFSS 300
Query: 366 GTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASI 425
GTTGEPKAIPWT+ TPFKAAADAWCHMDIRK DIVAWPTNLGWMMGPWLVYASLLNGASI
Sbjct: 301 GTTGEPKAIPWTHLTPFKAAADAWCHMDIRKGDIVAWPTNLGWMMGPWLVYASLLNGASI 360
Query: 426 ALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV 485
ALYNGSPLGSGFAKFVQDA VTMLGV+PSIVR WKS N GYDWS+IRCF STGEAS+V
Sbjct: 361 ALYNGSPLGSGFAKFVQDASVTMLGVIPSIVRIWKSANSTSGYDWSAIRCFASTGEASSV 420
Query: 486 DEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCP 545
DEYLWLMGRA YKP+IEYCGGTEIGGGF++GSLLQ QSLAAFSTPAMGC LFILG+DG P
Sbjct: 421 DEYLWLMGRAQYKPIIEYCGGTEIGGGFVSGSLLQPQSLAAFSTPAMGCSLFILGDDGHP 480
Query: 546 IPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYY 605
IPQNVPGMGELAL PL+FGASSTLLNA+HY+VYF GMP NG+ILRRHGDVFERTS GYY
Sbjct: 481 IPQNVPGMGELALGPLMFGASSTLLNADHYNVYFKGMPLWNGKILRRHGDVFERTSRGYY 540
Query: 606 RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS 665
AHGRADDTMNLGGIKVSSVEIER+CNAVDSNVLETAA+GVPPP GGPEQL I VVFKDS
Sbjct: 541 HAHGRADDTMNLGGIKVSSVEIERVCNAVDSNVLETAAVGVPPPQGGPEQLVIAVVFKDS 600
Query: 666 NYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 725
+ + DL++LR+S+NSAVQKKLNPLF++SHVVP SLPRTATNKVMRRVLR+QL+Q DQN
Sbjct: 601 DESTVDLDKLRISYNSAVQKKLNPLFRISHVVPFSSLPRTATNKVMRRVLRQQLSQQDQN 660
Query: 726 SKL 728
SKL
Sbjct: 661 SKL 663
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734139|emb|CBI15386.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1130 bits (2924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/662 (80%), Positives = 597/662 (90%), Gaps = 1/662 (0%)
Query: 68 LLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSV 127
++YYGCY FGPDPPAW+PDPE +TNVG+LL+ RG+EFLGS YKDPISSFS+FQ+FSV
Sbjct: 1 MMYYGCYSHFGPDPPAWLPDPENVMLTNVGQLLERRGKEFLGSRYKDPISSFSDFQKFSV 60
Query: 128 SNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNS 187
SNPEVYWKTVL+E+S SFSVPPQC+L +NP+ EN LS PGGQWLPGAF+NPA+NCLSVN
Sbjct: 61 SNPEVYWKTVLDELSISFSVPPQCVLYDNPSRENGLSYPGGQWLPGAFINPARNCLSVND 120
Query: 188 KRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247
KR+LDD V+ W DEGD G+P+ MTL+ELR EVW VAYAL+ LGL+KGSAIAIDMPMN +
Sbjct: 121 KRTLDDTVVIWHDEGDDGMPINRMTLEELRREVWSVAYALDTLGLEKGSAIAIDMPMNAS 180
Query: 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVID 306
SVVIYLAIVLAGYIVVSIADSFAS EIS RL+IS AKAIFTQD IIRGDKS+PLY RV+D
Sbjct: 181 SVVIYLAIVLAGYIVVSIADSFASREISTRLKISNAKAIFTQDFIIRGDKSLPLYSRVVD 240
Query: 307 AQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSG 366
AQ+P AIVIPA GSSFSMKLRDGD+SW DFL+R +++EFAA+EQP+EAF NILFSSG
Sbjct: 241 AQSPTAIVIPAGGSSFSMKLRDGDMSWHDFLQRAINSRDDEFAAIEQPIEAFMNILFSSG 300
Query: 367 TTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIA 426
TTGEPKAIPWTNATP KAAADAWCHMDIRK DIVAWPTNLGWMMGPWLVYASLLNGA+IA
Sbjct: 301 TTGEPKAIPWTNATPLKAAADAWCHMDIRKGDIVAWPTNLGWMMGPWLVYASLLNGATIA 360
Query: 427 LYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVD 486
LYNG+PLGSGFAKFVQDAKVTMLGV+PSIVRTWKSTNC G DWSSIRCF STGEAS+VD
Sbjct: 361 LYNGAPLGSGFAKFVQDAKVTMLGVIPSIVRTWKSTNCTAGLDWSSIRCFASTGEASSVD 420
Query: 487 EYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPI 546
EYLWLMGRA YKP+IEYCGGTEIGGGF+TGSLLQAQSLA+FSTPAMGC LFI+G+DG +
Sbjct: 421 EYLWLMGRAQYKPIIEYCGGTEIGGGFVTGSLLQAQSLASFSTPAMGCSLFIIGDDGNLL 480
Query: 547 PQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYR 606
PQ+ GMGELAL PL+FGAS+TLLNA+HYDVYF GMP NG++LRRHGDVFERTS GYYR
Sbjct: 481 PQDASGMGELALGPLMFGASTTLLNADHYDVYFKGMPIWNGKVLRRHGDVFERTSRGYYR 540
Query: 607 AHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSN 666
AHGRADDTMN+GGIKVSSVEIERICN V S+VLETAAIG+PPP GGPE+L IVVVFKDSN
Sbjct: 541 AHGRADDTMNIGGIKVSSVEIERICNTVHSSVLETAAIGMPPPAGGPERLMIVVVFKDSN 600
Query: 667 YTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQNS 726
+ PDLN+LR++FNS VQKKLNPLF+VSH VP+PSLPRTATNKVMRRVLR+QLAQL S
Sbjct: 601 NSIPDLNELRIAFNSEVQKKLNPLFRVSHTVPVPSLPRTATNKVMRRVLRQQLAQLSSTS 660
Query: 727 KL 728
K
Sbjct: 661 KF 662
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440895|ref|XP_004138219.1| PREDICTED: probable acyl-activating enzyme 17, peroxisomal-like [Cucumis sativus] gi|449477120|ref|XP_004154935.1| PREDICTED: probable acyl-activating enzyme 17, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1120 bits (2898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/725 (74%), Positives = 628/725 (86%), Gaps = 2/725 (0%)
Query: 5 NYKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFS 64
+YK LD IT DIEALG+ S+LA+QLH L EI+ T+G TPATW +I+ +L+PDLPFS
Sbjct: 2 DYKPLDSITVIDIEALGVGSQLAKQLHGSLGEIIRTYGNGTPATWLHISKKLLTPDLPFS 61
Query: 65 FHQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQE 124
FHQ++YYGCYK+FGPDPPAWIP+PE A TNVGKLL+ RG+EF+GS Y DP+SSFS+FQE
Sbjct: 62 FHQMMYYGCYKNFGPDPPAWIPEPENAVFTNVGKLLEKRGKEFMGSSYSDPLSSFSSFQE 121
Query: 125 FSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLS 184
FSVSNPEVYW+TVL+EM+ +FS PP CIL+ N + E+ S+PGGQWLPGA NPAK+CLS
Sbjct: 122 FSVSNPEVYWRTVLDEMNITFSKPPNCILQINDSPESKFSSPGGQWLPGAVFNPAKDCLS 181
Query: 185 VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM 244
+N RSLDD+ I W DEG LP+K +TL+ELRAEVWLVA+ALN++G +KG+AIAIDMPM
Sbjct: 182 LNENRSLDDVAIIWRDEGYDDLPLKRLTLRELRAEVWLVAHALNSIGFEKGTAIAIDMPM 241
Query: 245 NVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-R 303
NVN+VVIYLAIVLAG++VVSIADSFA+ EIS RL ISKAKAIFTQDLIIRGDKSIPLY R
Sbjct: 242 NVNAVVIYLAIVLAGHVVVSIADSFAAREISTRLDISKAKAIFTQDLIIRGDKSIPLYSR 301
Query: 304 VIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF 363
V+DAQAPLAIVIP + FSMKLRDGDISW FL++V+ LK EF AVEQ E+FTNILF
Sbjct: 302 VVDAQAPLAIVIPTNSTGFSMKLRDGDISWHAFLDKVKDLKGVEFDAVEQSAESFTNILF 361
Query: 364 SSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGA 423
SSGTTGEPKAIPWT TP KAAADAWCHMDI K D+VAWPTNLGWMMGPWLVYASLLN A
Sbjct: 362 SSGTTGEPKAIPWTLVTPLKAAADAWCHMDIHKGDVVAWPTNLGWMMGPWLVYASLLNKA 421
Query: 424 SIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEAS 483
S+ALYNGSPL SGF KF+QDAK TMLGV+PSIVR+WKSTNC GYDWSSIRCF STGEAS
Sbjct: 422 SMALYNGSPLSSGFVKFIQDAKTTMLGVIPSIVRSWKSTNCTSGYDWSSIRCFASTGEAS 481
Query: 484 NVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG 543
+VDEYLWLMGRA YKP+IEYCGGTEIGGGF+TGS+LQAQ+LAAFSTPAMGC LFILG+DG
Sbjct: 482 SVDEYLWLMGRACYKPIIEYCGGTEIGGGFVTGSMLQAQALAAFSTPAMGCSLFILGDDG 541
Query: 544 CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGG 603
PIPQN+PG+GELAL P +FGASS+LLNA+HYD+YF GMP NG ++RRHGD+FER+ G
Sbjct: 542 SPIPQNMPGIGELALGPFMFGASSSLLNADHYDIYFKGMPIWNGMLMRRHGDLFERSPRG 601
Query: 604 YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFK 663
+YRAHGRADDTMNLGGIKVSSVEIERICN V++++LETAAIGVPP GGPE+L I +VFK
Sbjct: 602 FYRAHGRADDTMNLGGIKVSSVEIERICNTVNNSILETAAIGVPPQGGGPERLVIAIVFK 661
Query: 664 DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723
+ + T DL++L+ SFNSA+QK LNPLF+V VVP PSLPRTATNKVMRR+LR+QL L+
Sbjct: 662 NPSETSIDLDKLKQSFNSAIQKNLNPLFRVHRVVPYPSLPRTATNKVMRRILRQQLT-LE 720
Query: 724 QNSKL 728
+KL
Sbjct: 721 HKTKL 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042362|gb|AFD33345.1| acyl-activating enzyme 1 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/722 (71%), Positives = 597/722 (82%), Gaps = 8/722 (1%)
Query: 5 NYKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFS 64
NYK+LD + + D ALGI S++AE LH +LAEIV +GAATP TW NI HILSPDLPFS
Sbjct: 4 NYKSLDSVVASDFIALGITSEVAETLHGRLAEIVCNYGAATPQTWINIANHILSPDLPFS 63
Query: 65 FHQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQE 124
HQ+L+YGCYKDFGP PPAWIPDPE K TN+G LL+ RG+EFLG YKDPISSFS+FQE
Sbjct: 64 LHQMLFYGCYKDFGPAPPAWIPDPEKVKSTNLGALLEKRGKEFLGVKYKDPISSFSHFQE 123
Query: 125 FSVSNPEVYWKTVL-NEMSTSFSVPPQCILRENPNGENHLSNPGG-QWLPGAFVNPAKNC 182
FSV NPEVYW+TVL +EM SFS P+CILR + ++NPGG +WLPG ++N AKNC
Sbjct: 124 FSVRNPEVYWRTVLMDEMKISFSKDPECILRRD-----DINNPGGSEWLPGGYLNSAKNC 178
Query: 183 LSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDM 242
L+VNS + L+D +I W DEG+ LP+ +TL +LR VWLV YAL +GL+KG AIAIDM
Sbjct: 179 LNVNSNKKLNDTMIVWRDEGNDDLPLNKLTLDQLRKRVWLVGYALEEMGLEKGCAIAIDM 238
Query: 243 PMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY 302
PM+V++VVIYLAIVLAGY+VVSIADSF++ EIS RLR+SKAKAIFTQD IIRG K IPLY
Sbjct: 239 PMHVDAVVIYLAIVLAGYVVVSIADSFSAPEISTRLRLSKAKAIFTQDHIIRGKKRIPLY 298
Query: 303 -RVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNI 361
RV++A++P+AIVIP GS+ +LRDGDISW FLER ++ K EF A EQPV+A+TNI
Sbjct: 299 SRVVEAKSPMAIVIPCSGSNIGAELRDGDISWDYFLERAKEFKNCEFTAREQPVDAYTNI 358
Query: 362 LFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLN 421
LFSSGTTGEPKAIPWT ATP KAAAD W H+DIRK D++ WPTNLGWMMGPWLVYASLLN
Sbjct: 359 LFSSGTTGEPKAIPWTQATPLKAAADGWSHLDIRKGDVIVWPTNLGWMMGPWLVYASLLN 418
Query: 422 GASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGE 481
GASIALYNGSPL SGFAKFVQDAKVTMLGVVPSIVR+WKSTNC+ GYDWS+IRCF S+GE
Sbjct: 419 GASIALYNGSPLVSGFAKFVQDAKVTMLGVVPSIVRSWKSTNCVSGYDWSTIRCFSSSGE 478
Query: 482 ASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGN 541
ASNVDEYLWLMGRA YKPVIE CGGTEIGG F GS LQAQSL++FS+ MGC L+IL
Sbjct: 479 ASNVDEYLWLMGRANYKPVIEMCGGTEIGGAFSAGSFLQAQSLSSFSSQCMGCTLYILDK 538
Query: 542 DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTS 601
+G P+P+N PG+GELAL P++FGAS TLLN NH+DVYF GMP+ NG++LRRHGD+FE TS
Sbjct: 539 NGYPMPKNKPGIGELALGPVMFGASKTLLNGNHHDVYFKGMPTLNGEVLRRHGDIFELTS 598
Query: 602 GGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVV 661
GYY AHGRADDTMN+GGIK+SS+EIER+CN VD V ET AIGVPP GGPEQL I V
Sbjct: 599 NGYYHAHGRADDTMNIGGIKISSIEIERVCNEVDDRVFETTAIGVPPLGGGPEQLVIFFV 658
Query: 662 FKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721
KDSN T DLNQLR+SFN +QKKLNPLFKV+ VVPL SLPRTATNK+MRRVLR+Q +
Sbjct: 659 LKDSNDTTIDLNQLRLSFNLGLQKKLNPLFKVTRVVPLSSLPRTATNKIMRRVLRQQFSH 718
Query: 722 LD 723
+
Sbjct: 719 FE 720
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297812451|ref|XP_002874109.1| acyl-activating enzyme 17 [Arabidopsis lyrata subsp. lyrata] gi|297319946|gb|EFH50368.1| acyl-activating enzyme 17 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/725 (72%), Positives = 612/725 (84%), Gaps = 8/725 (1%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPA-TWQNITTHILSPDLPFS 64
YK+L+ IT DIEALGI ++E+L + L EI+ HG++ P TW I+ IL P+LPFS
Sbjct: 3 YKSLNSITRSDIEALGISGDVSEKLLKDLDEII--HGSSMPPDTWIQISRRILHPNLPFS 60
Query: 65 FHQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQE 124
FHQ++YYGCYKDFGPDPPAW+PDP+ A +TNVGKLL+ RG+EFLG YK+PISSFS+FQE
Sbjct: 61 FHQMMYYGCYKDFGPDPPAWLPDPKVASLTNVGKLLERRGKEFLGENYKNPISSFSSFQE 120
Query: 125 FSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLS 184
FSVSNPEVYWKTVL+E++ FSVPP+CIL ++ +G+N PGG WLPGA++NPA+NCL+
Sbjct: 121 FSVSNPEVYWKTVLDELNIVFSVPPKCILEKDTSGDN----PGGNWLPGAYLNPARNCLT 176
Query: 185 VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM 244
KR LDDIVIRW DEG LPV +MTL ELR++VWL A+AL+AL L++ SAIA+DMPM
Sbjct: 177 NGFKRRLDDIVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALDLEEESAIAVDMPM 236
Query: 245 NVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYR- 303
NV SV+IYLAIVLAG++VVSIADSF+ EIS RL+ISKAKAIFTQD+IIRGDKSIPLYR
Sbjct: 237 NVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPLYRR 296
Query: 304 VIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF 363
VIDA+APLAIV+PA+GSS MKLR+ D+SW +FL + R L+ E+ AVE+P A+TNILF
Sbjct: 297 VIDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGKARNLRGVEYVAVEKPAGAYTNILF 356
Query: 364 SSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGA 423
SSGTTGEPKAIPWTN +P K+AADAWCH+D+ + D+VAWPTNLGWMMGPWLVYASL+NGA
Sbjct: 357 SSGTTGEPKAIPWTNISPLKSAADAWCHLDVHRGDVVAWPTNLGWMMGPWLVYASLINGA 416
Query: 424 SIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEAS 483
+ALYNGSPLG FAKFVQDA+VT+LGV+PSIVRTW+++N GYDWS IRCFGSTGEAS
Sbjct: 417 CMALYNGSPLGPTFAKFVQDAEVTVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGSTGEAS 476
Query: 484 NVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG 543
N+DEYLWLMGRA YKPVIEYCGGTEIGG FI+GSLLQ QSLAAFST MGCKLFILG DG
Sbjct: 477 NIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAVMGCKLFILGEDG 536
Query: 544 CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGG 603
PIP G+GELAL P +FGASSTLLN NH+ VYF GMP+ GQILRRHGD+FERTS G
Sbjct: 537 NPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFERTSKG 596
Query: 604 YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFK 663
YYRAHGRADDTMNLGGIKV S+EIER+CN+VD +VLETAAIGVPPP GGPEQL I VVFK
Sbjct: 597 YYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVIAVVFK 656
Query: 664 DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723
+ DLN L+ SFNS +QKKLNPLFKVS VV LPSLPRTATNKVMRRVLR+QL Q
Sbjct: 657 SPEISKHDLNVLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVLRQQLTQTS 716
Query: 724 QNSKL 728
NSKL
Sbjct: 717 LNSKL 721
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 728 | ||||||
| TAIR|locus:2178277 | 721 | AAE17 "acyl-activating enzyme | 0.984 | 0.994 | 0.706 | 3e-282 | |
| TAIR|locus:2035721 | 727 | AAE18 "acyl-activating enzyme | 0.969 | 0.971 | 0.481 | 1.4e-181 | |
| TIGR_CMR|BA_2553 | 646 | BA_2553 "acetoacetyl-CoA synth | 0.782 | 0.882 | 0.295 | 2.4e-53 | |
| UNIPROTKB|P27550 | 652 | acs [Escherichia coli K-12 (ta | 0.726 | 0.811 | 0.280 | 8.3e-40 | |
| ZFIN|ZDB-GENE-050320-139 | 693 | acss1 "acyl-CoA synthetase sho | 0.796 | 0.836 | 0.259 | 3.6e-36 | |
| UNIPROTKB|Q9KV59 | 649 | acsA "Acetyl-coenzyme A synthe | 0.734 | 0.824 | 0.273 | 4e-36 | |
| TIGR_CMR|VC_0298 | 649 | VC_0298 "acetyl-CoA synthase" | 0.734 | 0.824 | 0.273 | 4e-36 | |
| TIGR_CMR|SO_2743 | 650 | SO_2743 "acetyl-coenzyme A syn | 0.780 | 0.873 | 0.262 | 9e-36 | |
| UNIPROTKB|Q9NUB1 | 689 | ACSS1 "Acetyl-coenzyme A synth | 0.726 | 0.767 | 0.274 | 2.2e-35 | |
| TIGR_CMR|CPS_3955 | 648 | CPS_3955 "acetyl-CoA synthetas | 0.741 | 0.833 | 0.273 | 5.7e-35 |
| TAIR|locus:2178277 AAE17 "acyl-activating enzyme 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2712 (959.7 bits), Expect = 3.0e-282, P = 3.0e-282
Identities = 512/725 (70%), Positives = 601/725 (82%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPA-TWQNITTHILSPDLPFS 64
YK+L+ IT DIEALGI ++E+L L +I+ HG++TP TW I+ IL P+LPFS
Sbjct: 3 YKSLNSITKSDIEALGISGDVSEKLLRDLEDII--HGSSTPPETWIQISRRILHPNLPFS 60
Query: 65 FHQLLYYGCYKDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQE 124
FHQ++YYGCYKDFGPD PAWIPDP+ A +TNVGKLL+ RG+EFLG YK+P+SSFS+FQE
Sbjct: 61 FHQMMYYGCYKDFGPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSFSSFQE 120
Query: 125 FSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLS 184
FSVSNPEVYWKTVL+E++ FSVPP+CIL ++ +G+N PGG+WLPGA++NPA+NCL+
Sbjct: 121 FSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDN----PGGKWLPGAYLNPARNCLT 176
Query: 185 VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM 244
KR LDDIVIRW DEG LPV +MTL ELR++VWL A+AL+ALGL++ SAIA+DMPM
Sbjct: 177 NGFKRRLDDIVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVDMPM 236
Query: 245 NVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYR- 303
NV SV+IYLAIVLAG++VVSIADSF+ EIS RL+ISKAKAIFTQD+IIRGDKSIPLYR
Sbjct: 237 NVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPLYRR 296
Query: 304 VIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF 363
V+DA+APLAIV+PA+GSS MKLR+ D+SW +FL R L+ E+ A E+P A+TNILF
Sbjct: 297 VVDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGNARNLRGVEYVAAEKPAGAYTNILF 356
Query: 364 SSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGA 423
SSGTTGEPKAIPWTN +P K+AADAWCH+D+++ D+VAWPTNLGWMMGPWLVYASL+NGA
Sbjct: 357 SSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYASLINGA 416
Query: 424 SIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEAS 483
+ LYNGSPLG FAKFVQDA+V++LGV+PSIVRTW+++N GYDWS IRCFGSTGEAS
Sbjct: 417 CMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGSTGEAS 476
Query: 484 NVDEYLWLMGRALYKPVIEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDG 543
N+DEYLWLMGRA YKPVIEYC SLLQ QSLAAFST AMGCKLFIL D
Sbjct: 477 NIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFILDEDS 536
Query: 544 CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGG 603
PIP G+GELAL P +FGASSTLLN NH+ VYF GMP+ GQILRRHGD+FERTS G
Sbjct: 537 NPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFERTSKG 596
Query: 604 YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFK 663
YYRAHGRADDTMNLGGIKV S+EIER+CN+VD +VLETAAIGVPPP GGPEQL I VVFK
Sbjct: 597 YYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVIAVVFK 656
Query: 664 DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723
++ PDLN L+ SFNS +QKKLNPLFKVS VV LPSLPRTATNKVMRRVLR+QL Q
Sbjct: 657 SPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVLRQQLTQTG 716
Query: 724 QNSKL 728
NSKL
Sbjct: 717 LNSKL 721
|
|
| TAIR|locus:2035721 AAE18 "acyl-activating enzyme 18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1762 (625.3 bits), Expect = 1.4e-181, P = 1.4e-181
Identities = 350/727 (48%), Positives = 471/727 (64%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPAT-WQNITTH-ILSPDLPF 63
+K++ ++ D G+ + A++ + +++++ P W+ + +L P P
Sbjct: 2 WKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHPH 61
Query: 64 SFHQLLYYGCYKDFGPD---PPA-WIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSF 119
HQLLYY Y ++ PP W P +K TN+GKL++ G LG YK+P+ SF
Sbjct: 62 PLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLESF 121
Query: 120 SNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPA 179
F+ FSV +PEVYW V++E+S F PP+CIL + S P G WLP A +N A
Sbjct: 122 ELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILNK--------SKPEGTWLPDAVLNIA 173
Query: 180 KNCLSVNS--KRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSA 237
+ CL +S K+ D + + W +EG PV MT+KELR +V LVA A++ +KG
Sbjct: 174 ECCLMPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISG-SFEKGDT 232
Query: 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDK 297
IAIDMPM V++V+IYLAI+LAG IVVSIADSFA+ EI+ RL+ISKAK IFTQD I+RG +
Sbjct: 233 IAIDMPMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGR 292
Query: 298 SIPLY-RVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLK--ENEFAAVEQP 354
PLY RV++A IV+PA G+ ++LR+ D+SW+DFL + EN + + P
Sbjct: 293 RFPLYSRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLP 352
Query: 355 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL 414
VE+ NILFSSGTTGEPKAIPWT +P ++A D W H+D++ WPTNLGW+MGP L
Sbjct: 353 VESVINILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTL 412
Query: 415 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 474
+++ L GA++ALY+GSPLG GF KFVQDA VT+LG VPS+V+TWK TNC++G +W+ I+
Sbjct: 413 MFSCFLTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIK 472
Query: 475 CFGSTGEASNVDEYLWLMGRALYKPVIEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGC 534
F +TGEASNVD+ LWL +A YKPVIE C S LQ Q+ AFSTP+M
Sbjct: 473 FFATTGEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTT 532
Query: 535 KLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG 594
++ I +G P P + P GE+ L P GA+ LLNANH +VYF GMP LRRHG
Sbjct: 533 RIIIFDENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHG 592
Query: 595 DVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 654
D+ +RT GGYY GRADDTMNLGGIK SS+EIER+C+ D + ETAA+ + PP+GGPE
Sbjct: 593 DIVKRTVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTPPNGGPE 652
Query: 655 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRV 714
L I V K+ + +L+M F+ +QK LNPLFKVS V +P PRTA++K++RRV
Sbjct: 653 LLVIFAVLKEG-FKQQSGEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASSKLLRRV 711
Query: 715 LRKQLAQ 721
LR Q+ Q
Sbjct: 712 LRDQIKQ 718
|
|
| TIGR_CMR|BA_2553 BA_2553 "acetoacetyl-CoA synthase, putative" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 185/626 (29%), Positives = 294/626 (46%)
Query: 111 GYKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQW 170
GY+D + F S+ +W + + P +L + NG P QW
Sbjct: 26 GYED----YETFYNKSIEETAWFWGEAEKVVGYQWMKPYTEVL-DLQNG-----TPFAQW 75
Query: 171 LPGAFVNPAKNCLS--VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
G N ++ LS + + +++ EG+ G KS T +EL + V A L
Sbjct: 76 YNGGTCNVVESVLSRWLADDETRTQPALQY--EGENGTS-KSFTYEELDSWVSRAANGLK 132
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
G++KG + I MPM +VV LA++ G I+ I FAS + R++ + +K I T
Sbjct: 133 HAGIEKGDRVTIYMPMIPETVVAMLAVMKIGAIISPIFSGFASDAVMTRVQAAGSKMIIT 192
Query: 289 QDLIIRGDKSIPLYRVIDA---QAPLA---IVIPAKGSSFSMKLRDGDISWLDFLERVRK 342
D R K + L +D P +++ G+ F+ + D SW LE+ +
Sbjct: 193 ADGFSRRGKIVSLKDEVDKACEHCPTVEKVVIVRHAGNDFTP--HNYDFSW-STLEKEKP 249
Query: 343 LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT-PFKAAADAWCHMDIRKADIVA 401
E + P+ ++++SGTTG+PK T+A P KAA DA M+I++ D V
Sbjct: 250 FVHAEEMHSDDPLM----LIYTSGTTGKPKGTVHTHAGFPLKAAFDAGFGMNIKQGDRVL 305
Query: 402 WPTNLGWMMGPWLVYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRT 458
W T++GWMMGP+L++ SL+NGA++ +Y G P + V ++T LG+ P+++R
Sbjct: 306 WVTDMGWMMGPFLLFGSLINGATMVMYEGVPDFPKADRLWETVDKYEITHLGISPTLIRA 365
Query: 459 W--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWL---MGRALYKPVIEYCXXXXXXXXX 513
K ++ + S+ F STGE N D ++WL +G++ P+ Y
Sbjct: 366 LMAKGDEYVNKHSLKSLEVFASTGEPWNPDPWMWLFETVGKSNV-PICNYSGGTEISGGI 424
Query: 514 XXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL--N 571
L++ + +F+ G +L + G PI V GEL L G + + +
Sbjct: 425 FGNVLIKPIAPISFNASLPGMAAVVLDDQGNPIRDEV---GELCLEKPWVGMTKSFWEDD 481
Query: 572 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 631
+ + Y+S N + HGD + G Y GR+DDT+N+ G ++ E E I
Sbjct: 482 ERYVNTYWSRF--ENKWV---HGD-WVVYDGEQYIITGRSDDTLNIAGKRIGPAEYESIL 535
Query: 632 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSF-NSAVQKKLNPL 690
++V+E AAIGVP G E VV +D+ +L + MS NS + K L P
Sbjct: 536 -VKHNDVIEAAAIGVPDDVKG-EVCHCFVVLRDNVTFTGELKKELMSLVNSHIGKALCP- 592
Query: 691 FKVSHVVPLPSLPRTATNKVMRRVLR 716
K HVV LP+T +KVMRRV++
Sbjct: 593 -KDIHVVE--DLPKTRNSKVMRRVIK 615
|
|
| UNIPROTKB|P27550 acs [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 8.3e-40, P = 8.3e-40
Identities = 160/570 (28%), Positives = 257/570 (45%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + + + D I W EGD K ++ KEL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIW--EGDDASQSKHISYKELHRDVCRFANTLL 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
LG+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T
Sbjct: 126 ELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVIT 185
Query: 289 QDLIIRGDKSIPLYRVID--AQAP----LAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 341
D +R +SIPL + +D + P + V+ K + + ++G D+ W D +E+
Sbjct: 186 SDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDLVEQAS 245
Query: 342 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIV 400
+ E E P+ F IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 246 DQHQAEEMNAEDPL--F--ILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIY 301
Query: 401 AWPT-NLGWMMG-PWLVYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSI 455
W T ++GW+ G +L+Y L GA+ ++ G P + A+ V +V +L P+
Sbjct: 302 -WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTA 360
Query: 456 VRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCXXXXXXX 511
+R + I+G D SS+R GS GE N + + W + + PV++
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVD-TWWQTETG 419
Query: 512 XXXXXSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 569
L A L A S P G + ++ N+G P+ G L ++ G + TL
Sbjct: 420 GFMITPLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATEG--SLVITDSWPGQARTL 477
Query: 570 LNANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEI 627
+ YFS +N + GD R GYY GR DD +N+ G ++ + EI
Sbjct: 478 FGDHERFEQTYFSTF--KN---MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532
Query: 628 ERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKL 687
E A + E A +G+P G V + +P +L + V+K++
Sbjct: 533 ESALVA-HPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEI 587
Query: 688 NPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
PL + SLP+T + K+MRR+LRK
Sbjct: 588 GPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
|
|
| ZFIN|ZDB-GENE-050320-139 acss1 "acyl-CoA synthetase short-chain family member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 3.6e-36, P = 3.6e-36
Identities = 164/631 (25%), Positives = 284/631 (45%)
Query: 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVN 177
++++ E SV +PE +W ++ E +++ P + + +S+ W G +N
Sbjct: 61 NYADLYELSVKDPENFWGSIAKER-LAWTKPFDQV------SDCDISSGKINWFLGGQLN 113
Query: 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSA 237
+ NCL V+ + + W ++ + G + +T +EL +A L + G+ +G
Sbjct: 114 VSVNCLDVHVANDPSRVALIW-EKDEPGTEER-ITYRELLEMTCRLANTLKSHGVQRGER 171
Query: 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDK 297
+AI MP++ +V LA G + + F+S ++ R++ ++ K + T + +RG +
Sbjct: 172 VAIYMPVSPMAVAAMLACARIGAVHTVVFAGFSSEALAGRIQDAQCKFVITCNQGVRGGR 231
Query: 298 SIPLYRVIDA---QAP-LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQ 353
L +D P + V AK ++ S+ + DI LE V + +E A
Sbjct: 232 VFDLKSTVDKAVKSCPSVRHVFVAKRTNNSVPMGKLDIP----LEEVMAGQSSECAPEPM 287
Query: 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWPTNLGWMMG- 411
E +L++SG+TG+PK I T A A+ ++ D D+ ++GW+ G
Sbjct: 288 ESEEMLFMLYTSGSTGKPKGIVHTQAGYLLYASLTHQYVFDYTPGDVFGCVADIGWITGH 347
Query: 412 PWLVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVTMLGVVPSIVRTWKS--TNCID 466
++VY L NGA+ L+ +P+ ++ VQ ++ P+ +R + +
Sbjct: 348 SYVVYGPLCNGATSVLFESTPVYPNPGRYWETVQRLRINQFYGAPTAIRLLLKYEESWVK 407
Query: 467 GYDWSSIRCFGSTGEASNVDEYLW---LMGRALYKPVIEYCXXXXXXXXXXXXSLLQ--A 521
YD SS++ S GE N + + W ++G P+++ + A
Sbjct: 408 KYDRSSLKTLASVGEPINHEAWDWFHNVVGDGRC-PLVDTWWQTETGGVCIAPLPAEPGA 466
Query: 522 QSLAAFST-PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH--YDVY 578
+ A + P G K +LG G I N G L +S G + T+ + D Y
Sbjct: 467 EIRPAMAMRPFFGIKPELLGEKGQIITGNDVN-GALCISQPWPGMARTIFGDHQRFVDAY 525
Query: 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN- 637
F P + GQ GD RT GYY+ GR DD +N+ G ++ + EIE +A+D +
Sbjct: 526 FK--PYQ-GQYFT--GDGAYRTEDGYYQITGRMDDVINISGHRLGTAEIE---DALDEHP 577
Query: 638 -VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPD--LNQLRMSFNSAVQKKLNPLFKVS 694
V ETA IG+P G VV+ K+S +N+LR S + K P
Sbjct: 578 DVPETAVIGIPHEIKGEVPFAFVVL-KESAAENQQAVVNELRHLVASKIAKYAVP----D 632
Query: 695 HVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 725
H + + LP+T + K+MRR+LRK Q N
Sbjct: 633 HFLVVKRLPKTRSGKIMRRILRKVAVQDTSN 663
|
|
| UNIPROTKB|Q9KV59 acsA "Acetyl-coenzyme A synthetase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 4.0e-36, P = 4.0e-36
Identities = 159/582 (27%), Positives = 255/582 (43%)
Query: 162 HLS-NPGG---QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELR 217
H S +PG +W +N + NC+ + D + I W EGD K++T K+L
Sbjct: 57 HTSFDPGHIDIRWFEDGTLNVSANCIDRHLATRGDQVAIIW--EGDDPTQDKTLTYKQLH 114
Query: 218 AEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277
EV A AL G+ KG + I MPM + V LA G + + F+ ++ R
Sbjct: 115 QEVCRFANALKEQGVRKGDVVCIYMPMVPEAAVAMLACTRIGAVHTIVFGGFSPEALAGR 174
Query: 278 LRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIP-AKGSSFSMKLR--DGDISWL 334
+ S AK + T D +RG +++PL + +D A+ P K S M L+ G+++W
Sbjct: 175 IIDSNAKLVITADEGVRGGRAVPLKKNVDE----ALCNPEVKNISKVMVLKRTGGNVAWH 230
Query: 335 D-----FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW 389
+ + E K +N E E IL++SG+TG+PK + T A +
Sbjct: 231 EHRDIWWHEATAKASDN-CPPEEMKAEDPLFILYTSGSTGKPKGVLHTTGGYLVYATMTF 289
Query: 390 CHMDIRKADIVAWPT-NLGWMMG-PWLVYASLLNGASIALYNGSP---LGSGFAKFVQDA 444
++ + + V W T ++GW+ G +LVY L NGA L+ G P + ++ V
Sbjct: 290 KYVFDYQPNEVFWCTADVGWITGHSYLVYGPLANGAKTILFEGVPNYPTTARMSEVVDKH 349
Query: 445 KVTMLGVVPSIVRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL---YKP 499
KV +L P+ +R K I G S+R GS GE N + + W R + P
Sbjct: 350 KVNILYTAPTAIRALMAKGDEAIKGTSRDSLRIMGSVGEPINPEAWEWYY-RTIGNEKSP 408
Query: 500 VIEYCXXXXXXXXXXXXSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELA 557
+++ L A +L S P G + ++ N G I + G L
Sbjct: 409 IVD-TWWQTETGGILITPLPGATALKPGSATRPFFGVQPALVDNMG-EIVEGATE-GNLV 465
Query: 558 LSPLIFGASSTLL-NANHYD-VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTM 615
L G T+ + + ++ YFS G GD R GYY GR DD +
Sbjct: 466 LLDSWPGQMRTVYGDHDRFEQTYFSTF---KGMYFT--GDGARRDEDGYYWITGRVDDVL 520
Query: 616 NLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQL 675
N+ G ++ + EIE A + + E A +GVP G + + + D Y +L++
Sbjct: 521 NVSGHRMGTAEIESALVAFNK-IAEAAVVGVPHDIKG-QAIYAYITLNDGVYPSAELHK- 577
Query: 676 RMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
V+K++ + + +LP+T + K+MRR+LRK
Sbjct: 578 --EVKDWVRKEIGAIATPDVLHWTDALPKTRSGKIMRRILRK 617
|
|
| TIGR_CMR|VC_0298 VC_0298 "acetyl-CoA synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 4.0e-36, P = 4.0e-36
Identities = 159/582 (27%), Positives = 255/582 (43%)
Query: 162 HLS-NPGG---QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELR 217
H S +PG +W +N + NC+ + D + I W EGD K++T K+L
Sbjct: 57 HTSFDPGHIDIRWFEDGTLNVSANCIDRHLATRGDQVAIIW--EGDDPTQDKTLTYKQLH 114
Query: 218 AEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277
EV A AL G+ KG + I MPM + V LA G + + F+ ++ R
Sbjct: 115 QEVCRFANALKEQGVRKGDVVCIYMPMVPEAAVAMLACTRIGAVHTIVFGGFSPEALAGR 174
Query: 278 LRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIP-AKGSSFSMKLR--DGDISWL 334
+ S AK + T D +RG +++PL + +D A+ P K S M L+ G+++W
Sbjct: 175 IIDSNAKLVITADEGVRGGRAVPLKKNVDE----ALCNPEVKNISKVMVLKRTGGNVAWH 230
Query: 335 D-----FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW 389
+ + E K +N E E IL++SG+TG+PK + T A +
Sbjct: 231 EHRDIWWHEATAKASDN-CPPEEMKAEDPLFILYTSGSTGKPKGVLHTTGGYLVYATMTF 289
Query: 390 CHMDIRKADIVAWPT-NLGWMMG-PWLVYASLLNGASIALYNGSP---LGSGFAKFVQDA 444
++ + + V W T ++GW+ G +LVY L NGA L+ G P + ++ V
Sbjct: 290 KYVFDYQPNEVFWCTADVGWITGHSYLVYGPLANGAKTILFEGVPNYPTTARMSEVVDKH 349
Query: 445 KVTMLGVVPSIVRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL---YKP 499
KV +L P+ +R K I G S+R GS GE N + + W R + P
Sbjct: 350 KVNILYTAPTAIRALMAKGDEAIKGTSRDSLRIMGSVGEPINPEAWEWYY-RTIGNEKSP 408
Query: 500 VIEYCXXXXXXXXXXXXSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELA 557
+++ L A +L S P G + ++ N G I + G L
Sbjct: 409 IVD-TWWQTETGGILITPLPGATALKPGSATRPFFGVQPALVDNMG-EIVEGATE-GNLV 465
Query: 558 LSPLIFGASSTLL-NANHYD-VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTM 615
L G T+ + + ++ YFS G GD R GYY GR DD +
Sbjct: 466 LLDSWPGQMRTVYGDHDRFEQTYFSTF---KGMYFT--GDGARRDEDGYYWITGRVDDVL 520
Query: 616 NLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQL 675
N+ G ++ + EIE A + + E A +GVP G + + + D Y +L++
Sbjct: 521 NVSGHRMGTAEIESALVAFNK-IAEAAVVGVPHDIKG-QAIYAYITLNDGVYPSAELHK- 577
Query: 676 RMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
V+K++ + + +LP+T + K+MRR+LRK
Sbjct: 578 --EVKDWVRKEIGAIATPDVLHWTDALPKTRSGKIMRRILRK 617
|
|
| TIGR_CMR|SO_2743 SO_2743 "acetyl-coenzyme A synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 9.0e-36, P = 9.0e-36
Identities = 162/618 (26%), Positives = 266/618 (43%)
Query: 122 FQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKN 181
+QE S+ NPE +W+ + + P +++ +++LS W +N + N
Sbjct: 28 YQE-SIVNPEGFWREHGKRIDW---IKPYTKIKKTTFDDHNLSI---NWFYDGTLNASAN 80
Query: 182 CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAID 241
CL + D + I W EGD + +T EL +V A AL + G+ +G + I
Sbjct: 81 CLDRHLAAHSDRVAIIW--EGDNANEQRKITYGELHTQVCKFANALRSQGVRRGDIVTIY 138
Query: 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPL 301
MPM + V LA G + + F+ I++R+ K+K + T D +RG ++IPL
Sbjct: 139 MPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKIVITSDEGMRGGRAIPL 198
Query: 302 YRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERV-RKLKE--NEFAAVEQP-VEA 357
R ID V + +K G I W++ + L E +E AVE+ E
Sbjct: 199 KRNIDDALKHPDVTSVE-KVIVLKRTGGKIDWVEGRDVWWHSLVETASEHCAVEEMGAED 257
Query: 358 FTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPT-NLGWMMG-PWLV 415
+L++SG+TG PK + T A+ ++ K + W T ++GW+ G ++V
Sbjct: 258 PLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKPGEIYWCTADVGWITGHSYMV 317
Query: 416 YASLLNGASIALYNG---SPLGSGFAKFVQDAKVTMLGVVPSIVRTW--KSTNCIDGYDW 470
Y L NGA++ ++ G P + + + KV +L P+++R + D Y+
Sbjct: 318 YGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGKQHFDKYNG 377
Query: 471 SSIRCFGSTGEASNVDEYLWLMGRALYKPVI--EYCXXXXXXXXXXXXSLLQAQSLAAFS 528
SS+R GS GE N + + W Y VI E+C +L A
Sbjct: 378 SSLRIMGSVGEPINPEAWRW------YHEVIGHEHCPIVDTWWQTETGGILITPLPGATD 431
Query: 529 T-------PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG 581
T P G + ++ N G I + G L L G T+ +H +
Sbjct: 432 TKPGSATRPFFGVQPALVDNMG-NILEGATE-GNLVLLDSWPGQMRTVYG-DHERFVLTY 488
Query: 582 MPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VL 639
+ G GD R GYY GR DD +N+ G ++ + E+E +A+ S+ V
Sbjct: 489 FKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVE---SALVSHELVA 543
Query: 640 ETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPL 699
E A +G P G V + + + + +LR V+K++ L +
Sbjct: 544 EAAVVGYPHDIKGQGIYAYVTLTRGTE----ESEELRQELRQWVRKEIGALATPDLIQWA 599
Query: 700 PSLPRTATNKVMRRVLRK 717
LP+T + K+MRR LRK
Sbjct: 600 TGLPKTRSGKIMRRFLRK 617
|
|
| UNIPROTKB|Q9NUB1 ACSS1 "Acetyl-coenzyme A synthetase 2-like, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 409 (149.0 bits), Expect = 2.2e-35, P = 2.2e-35
Identities = 156/568 (27%), Positives = 253/568 (44%)
Query: 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA 229
W G +N + NCL + ++S + + + W + + G V+ +T +EL +A L
Sbjct: 102 WFLGGQLNVSVNCLDQHVRKSPESVALIW-ERDEPGTEVR-ITYRELLETTCRLANTLKR 159
Query: 230 LGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQ 289
G+ +G +AI MP++ +V LA G + I F++ ++ R+ +K K + T
Sbjct: 160 HGVHRGDRVAIYMPVSPLAVAAMLACARIGAVHTVIFAGFSAESLAGRINDAKCKVVITF 219
Query: 290 DLIIRGDKSIPLYRVIDA---QAP-LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKE 345
+ +RG + + L +++D P + V+ A + + + D D+ LE+ KE
Sbjct: 220 NQGLRGGRVVELKKIVDEAVKHCPTVQHVLVAHRTDNKVHMGDLDVP----LEQ-EMAKE 274
Query: 346 NEFAAVEQP-VEAFTNILFSSGTTGEPKAIPWTNATPFK-AAADAWCHMDIRKADIVAWP 403
+ A E E +L++SG+TG PK I T A AA D + DI
Sbjct: 275 DPVCAPESMGSEDMLFMLYTSGSTGMPKGIVHTQAGYLLYAALTHKLVFDHQPGDIFGCV 334
Query: 404 TNLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVTMLGVVPSIVRTW 459
++GW+ G ++VY L NGA+ L+ +P+ ++ V+ K+ P+ VR
Sbjct: 335 ADIGWITGHSYVVYGPLCNGATSVLFESTPVYPNAGRYWETVERLKINQFYGAPTAVRLL 394
Query: 460 -KSTNC-IDGYDWSSIRCFGSTGEASNVDEYLWL---MGRALYKPVIEYCXXXXXXXXXX 514
K + + YD SS+R GS GE N + + WL +G + V +
Sbjct: 395 LKYGDAWVKKYDRSSLRTLGSVGEPINCEAWEWLHRVVGDSRCTLVDTWWQTETGGICIA 454
Query: 515 XXSLLQ-AQSLAAFST-PAMGCKLFILGNDGCPIP-QNVPGMGELALSPLIFGASSTLLN 571
+ A+ L A + P G ++ G + NV G L +S G + T+
Sbjct: 455 PRPSEEGAEILPAMAMRPFFGIVPVLMDEKGSVVEGSNVSGA--LCISQAWPGMARTIYG 512
Query: 572 ANH--YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIER 629
+ D YF P G GD RT GGYY+ GR DD +N+ G ++ + EIE
Sbjct: 513 DHQRFVDAYFKAYP---GYYFT--GDGAYRTEGGYYQITGRMDDVINISGHRLGTAEIED 567
Query: 630 ICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNP 689
A V E+A IG P G +VV KDS D + + S V K+
Sbjct: 568 AI-ADHPAVPESAVIGYPHDIKGEAAFAFIVV-KDS---AGDSDVVVQELKSMVATKIAK 622
Query: 690 LFKVSHVVPLPSLPRTATNKVMRRVLRK 717
++ + LP+T + KVMRR+LRK
Sbjct: 623 YAVPDEILVVKRLPKTRSGKVMRRLLRK 650
|
|
| TIGR_CMR|CPS_3955 CPS_3955 "acetyl-CoA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 5.7e-35, P = 5.7e-35
Identities = 160/586 (27%), Positives = 247/586 (42%)
Query: 163 LSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWL 222
L N W G +N + NC+ + +D I + EGD +T +EL V
Sbjct: 62 LKNSEINWFSGGKLNVSYNCIDRHLATKANDTAIIF--EGDDPNDDSKVTYQELHDHVCR 119
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISK 282
A L G+ KG + I MPM LA G I + F++ I AR+ +
Sbjct: 120 FANLLKERGVKKGDRVCIYMPMIPEVGYAMLACARIGAIHSVVFGGFSTESIKARVLDAD 179
Query: 283 AKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD-----FL 337
K + T D +RG K IPL +DA I P S + GD++W D +
Sbjct: 180 CKVVITADQSLRGGKRIPLKSNVDAAV---IDCPNVHSVIVVARTGGDVAWNDKVDINYE 236
Query: 338 ERVRK---LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDI 394
E V K + E E E P+ F +L++SG+TG PK + T AA ++
Sbjct: 237 EAVAKQSAICEPEVMDAEDPL--F--VLYTSGSTGTPKGVVHTCGGYILYAAMTHKYVFD 292
Query: 395 RKADIVAWPT-NLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKFVQDA---KVTML 449
K V W T + GW+ G ++ Y L NGA+ ++ G P +F Q KV +
Sbjct: 293 YKEGEVYWCTADAGWITGHSYIFYGPLANGATTLVFEGVPTYPDAGRFWQVCEKHKVNVF 352
Query: 450 GVVPSIVRTWKST--NCIDGYDWSSIRCFGSTGEASNVDEYLW---LMGRALYKPVIEYC 504
P+ +R S + ++ D SS+R G+ GE N + + W ++G++ P+++
Sbjct: 353 YTAPTAIRALMSIGDDLVNQADLSSLRLLGTVGEPINPEAWHWYYEVVGKSNC-PIVD-T 410
Query: 505 XXXXXXXXXXXXSLLQAQSL--AAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLI 562
SL A + P G + + DG + G+ L ++
Sbjct: 411 WWQTETGGILITSLPGAVDMKPGCAGKPFFGVQPALFDKDGNTLEGENAGL--LVMTASW 468
Query: 563 FGASSTLLNANH--YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGI 620
G T+ ++ Y Y P G GD +R GYY GR DD +N+ G
Sbjct: 469 PGQLRTVYGDHNRFYQTYLGQYP---GNYFT--GDGAKRDEDGYYWITGRVDDVLNVSGH 523
Query: 621 KVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFN 680
++ + EIE + V E A +G P G V + N T D +L +
Sbjct: 524 RLGTAEIESAL-VLHPAVAEAAVVGYPHEIKGQGVYCYVTLM--GNATESD--ELNVELR 578
Query: 681 SAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQNS 726
V K+L K ++ P LP+T + K+MRR+LRK +A+ D +S
Sbjct: 579 EFVAKELGRFAKPDYIQWSPGLPKTRSGKIMRRILRK-IAENDVDS 623
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F4KBF3 | AAE17_ARATH | 6, ., 2, ., 1, ., - | 0.72 | 0.9848 | 0.9944 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.691 |
| 4th Layer | 6.2.1.16 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 728 | |||
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.0 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 0.0 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-102 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-90 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 4e-53 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 3e-51 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 1e-50 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 5e-50 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-47 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 2e-47 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 1e-43 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 9e-43 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 2e-39 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 3e-37 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 4e-36 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 1e-33 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 3e-29 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 2e-27 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 5e-26 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 3e-23 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 4e-23 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 8e-23 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-22 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 4e-22 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 1e-21 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-21 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 3e-21 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 1e-20 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-19 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-19 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 2e-19 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 5e-19 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 8e-18 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 9e-18 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 1e-17 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 9e-16 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 2e-15 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 6e-15 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 8e-15 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 2e-14 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 3e-14 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 5e-13 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 6e-13 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 3e-12 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 3e-12 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 7e-12 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-11 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 1e-11 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 3e-11 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 4e-11 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 5e-11 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 6e-11 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 8e-11 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 8e-11 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-10 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 3e-10 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 3e-10 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 5e-10 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 1e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-09 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 4e-09 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 4e-09 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 6e-09 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 1e-08 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-08 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 2e-08 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-08 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 4e-08 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 5e-08 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 8e-08 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 1e-07 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 1e-07 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 2e-07 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 2e-07 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 3e-07 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 4e-07 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 9e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-06 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 2e-06 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 2e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 4e-06 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 4e-06 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 4e-06 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 4e-06 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 5e-06 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 6e-06 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 9e-06 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 9e-06 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 9e-06 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 9e-06 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-05 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 1e-05 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-05 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-05 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 1e-05 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-05 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 3e-05 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 4e-05 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 4e-05 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 5e-05 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 7e-05 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 7e-05 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 1e-04 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 1e-04 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-04 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 1e-04 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 1e-04 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 1e-04 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 1e-04 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-04 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 2e-04 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 2e-04 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 3e-04 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 3e-04 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 3e-04 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 4e-04 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 5e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 7e-04 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 0.001 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 0.001 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 0.001 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 0.001 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 0.001 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 0.002 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 0.002 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 0.002 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.002 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 0.003 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 0.003 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 0.003 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 0.004 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 1352 bits (3502), Expect = 0.0
Identities = 504/729 (69%), Positives = 588/729 (80%), Gaps = 11/729 (1%)
Query: 6 YKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSF 65
K++D IT D+EA G+ + AE+ ++L I+ GA+ P+ W+ I+ +L+P PF+
Sbjct: 5 GKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRAGASPPSIWRRISQSLLTPSHPFAL 64
Query: 66 HQLLYYGCYKDFGPD----PPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSN 121
HQL+YY CYK++ D PPAW P PE AK+TN+G+LL+ RG+E LGS YKDPISSFS
Sbjct: 65 HQLMYYSCYKNWDSDTLGPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSE 124
Query: 122 FQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKN 181
FQ FSV NPEVYW VL+E+S FSVPP+CIL + SNPGGQWLPGA +N A+
Sbjct: 125 FQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSD-----ESNPGGQWLPGAVLNVAEC 179
Query: 182 CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAID 241
CL+ ++ D I I W DEG LPV MTL ELR++V VA AL+ALG +KG AIAID
Sbjct: 180 CLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239
Query: 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPL 301
MPMNV++V+IYLAI+LAG +VVSIADSFA EI+ RL+ISKAKAIFTQD+I+RG KSIPL
Sbjct: 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPL 299
Query: 302 Y-RVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKL-KENEFAAVEQPVEAFT 359
Y RV++A+AP AIV+PA G S +KLR+GD+SW DFL R L + +E+ AVEQPVEAFT
Sbjct: 300 YSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFT 359
Query: 360 NILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 419
NILFSSGTTGEPKAIPWT TP +AAADAW H+DIRK DIV WPTNLGWMMGPWLVYASL
Sbjct: 360 NILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASL 419
Query: 420 LNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGST 479
LNGA++ALYNGSPLG GFAKFVQDAKVTMLG VPSIV+TWK+TNC+ G DWSSIRCFGST
Sbjct: 420 LNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479
Query: 480 GEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFIL 539
GEAS+VD+YLWLM RA YKP+IEYCGGTE+GGGF+TGSLLQ Q+ AAFSTPAMGCKLFIL
Sbjct: 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFIL 539
Query: 540 GNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFER 599
+ G P P + P GELAL PL+FGASSTLLNA+HY VYF GMP NG+ILRRHGD+FER
Sbjct: 540 DDSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFER 599
Query: 600 TSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIV 659
TSGGYYRAHGRADDTMNLGGIKVSSVEIER+CNA D +VLETAAIGVPPP GGPEQL I
Sbjct: 600 TSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIA 659
Query: 660 VVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 719
V KD + PDLN+L+ FNSA+QKKLNPLFKVS VV +PS PRTA+NKVMRRVLR+QL
Sbjct: 660 AVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQL 719
Query: 720 AQLDQNSKL 728
AQ SKL
Sbjct: 720 AQELSRSKL 728
|
Length = 728 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 674 bits (1742), Expect = 0.0
Identities = 276/499 (55%), Positives = 356/499 (71%), Gaps = 12/499 (2%)
Query: 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPL 301
MPM V++V+IYLAIVLAG +VVS+ADSF++ EI+ RL IS AK +FTQD+++RG +++PL
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60
Query: 302 Y-RVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKL---KENEFAAVEQPVEA 357
Y +V++A AIV+PA G ++ LR+ D+SW DFL NE++ V PVE+
Sbjct: 61 YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVES 120
Query: 358 FTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 417
TNILFSSGTTGEPKAIPWT+ +P + A+D W HMDI+ D+V WPTNLGWMMGPWL+Y+
Sbjct: 121 VTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYS 180
Query: 418 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRC 475
+ LNGA++ALY G+PLG GF KFVQDA VT+LG+VPSIV+ W+ T ++G DWS +R
Sbjct: 181 AFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240
Query: 476 FGSTGEASNVDEYLWLM-GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGC 534
F STGEAS VD+ LWL R YKPVIEYCGGTE+ G+I+ +LLQ Q+ AFST ++G
Sbjct: 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGT 300
Query: 535 KLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP--SRNGQILRR 592
+ +L ++G P P + P +GE+AL+P + GAS LLNA+H VY+ GMP G LRR
Sbjct: 301 RFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRR 360
Query: 593 HGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652
HGD+ +RT GGY+ GRADDTMNLGGIK SSVEIER C+ + + ETAA+GV PPDGG
Sbjct: 361 HGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGG 420
Query: 653 PEQLTIVVVFKDSNYTPP--DLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKV 710
PE L I +V + L+ F A+Q LNPLFKVS V +P LPR A+NK+
Sbjct: 421 PELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKL 480
Query: 711 MRRVLRKQLAQLDQ-NSKL 728
+RRVLR QL + SKL
Sbjct: 481 LRRVLRDQLKKELSGRSKL 499
|
Length = 499 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 322 bits (828), Expect = e-102
Identities = 168/522 (32%), Positives = 238/522 (45%), Gaps = 82/522 (15%)
Query: 208 VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIAD 267
V++ T EL EV +A L ALGL KG + I MPM +VV LAI G I V I
Sbjct: 5 VRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFS 64
Query: 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLR 327
F ++ RL+ ++AK + T D +R K + L P I
Sbjct: 65 GFGPDAVATRLQDAEAKVLITADGFLRRGKRVDL-----KDDPAMI-------------- 105
Query: 328 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNA-TPFKAAA 386
+++SGTTG+PK T+A P KAA
Sbjct: 106 ----------------------------------IYTSGTTGKPKGTVHTHAGFPVKAAK 131
Query: 387 DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSG---FAKFVQD 443
D D++ D + W T++GWMMGPWLV LL GA+I LY G+P + V+
Sbjct: 132 DIGFCFDLKPGDRLLWITDMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDRLWRIVER 191
Query: 444 AKVTMLGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWLM-----GRAL 496
KVT LG+ P+++R ++ ++G+D SS+R GSTGE + + +LWL GRA
Sbjct: 192 HKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRA- 250
Query: 497 YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGEL 556
P+I Y GGTEI GG + ++ +F+ P+ G ++ DG P+ +GEL
Sbjct: 251 --PIINYSGGTEISGGILGNVPIRPIKPCSFNGPSPGMDADVVDEDGRPVR---GEVGEL 305
Query: 557 ALSPLIFGASSTLLNAN--HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDT 614
+ G + + + Y+S P + HGD GY+ GR+DDT
Sbjct: 306 VVRAPWPGMTRGFWRDPERYLETYWSRFPG-----VWVHGDWALVDEDGYWYILGRSDDT 360
Query: 615 MNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQ 674
+ + G +V EIE + N+ V E AAIGVP P G E + VV K TP
Sbjct: 361 IKVAGKRVGPAEIESVLNSHP-AVAEAAAIGVPDPVKG-EAIVCFVVLKP-GVTPSAA-- 415
Query: 675 LRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716
L V L F+ V + LP+T K+MRRV+R
Sbjct: 416 LEAELADHVGDALGKPFRPREVHFVSDLPKTRNGKIMRRVIR 457
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = 1e-90
Identities = 157/562 (27%), Positives = 249/562 (44%), Gaps = 51/562 (9%)
Query: 169 QWLPGAFVNPAKNCLSVNSKR-SLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYAL 227
+W G +N A N L + + DD I + E + +T +LR EV +A AL
Sbjct: 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFDGEDGLF---RELTYGDLRREVARLANAL 57
Query: 228 NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIF 287
LG KG +AI MP + +V+ LA G I ++ ++ ++ R+ K +
Sbjct: 58 KDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLI 117
Query: 288 TQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENE 347
D R K I L DA +V+ + + + +E+ + +
Sbjct: 118 ADDGTFRNGKEIALLEDADAVLSSVVVV-----------PRLGLWYDEAVEKASE----K 162
Query: 348 FAAVEQPVE--AFTNILFSSGTTGEPKAIPWTNA-TPFKAAADAWCHMDIRKADIVAWPT 404
F P + F +L++SGTTG+PK I ++ + A H D+ D +
Sbjct: 163 FEFEPLPADDPLF--LLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSS 220
Query: 405 NLGWMMGPW-LVYASLLNGASIALYNGSPLGSG--FAKFVQDAKVTMLGVVPSIVRTWKS 461
+ GW+ G W V++ L +GA+ LY+G P S + ++ KVT+ G P+ +R
Sbjct: 221 DPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMK 280
Query: 462 TNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL-LQ 520
+ YD SS+R GS GE N + + W AL +++ G TE G GFI G ++
Sbjct: 281 LGLGEPYDLSSLRVLGSAGEPLNPEAFEWFY-SALGVWILDIYGQTETGMGFIAGRPPVK 339
Query: 521 AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN--HYDVY 578
S P G + + ++G P+P PG+GEL + G + T N + + Y
Sbjct: 340 NGSSG---LPLPGYAVRRVDDEGNPVP---PGVGELVVRLPWPGMALTYWNDPERYKEAY 393
Query: 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNV 638
F R GD ER GY+ HGR+DD + + G ++ +EIE + A V
Sbjct: 394 FGRW--------YRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHP-AV 444
Query: 639 LETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVP 698
E A +GVP P G + + VV P N+L V + + P +
Sbjct: 445 AEAAVVGVPDPGKG-QIVLAFVVLAA-GVEP---NELAEEIRRHVARNIGPHAIPRKIRF 499
Query: 699 LPSLPRTATNKVMRRVLRKQLA 720
+ LP+TA+ K+ RR+LRK L
Sbjct: 500 VDELPKTASGKIQRRLLRKILH 521
|
Length = 528 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 193 bits (494), Expect = 4e-53
Identities = 153/628 (24%), Positives = 251/628 (39%), Gaps = 74/628 (11%)
Query: 115 PISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGA 174
++ + +SV + +W++V + S +L + PG +W PGA
Sbjct: 4 SLADYHALWRWSVEDLAAFWESVWDFFDVIGSKGYVVVLDGDIM-------PGARWFPGA 56
Query: 175 FVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDK 234
+N A+N L D I E DG + ++ ELR++V +A AL LG+
Sbjct: 57 RLNYAENLLR---HADNDPAAIYAAGE-DG--ERREISWAELRSQVARLAAALRDLGVKP 110
Query: 235 GSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIR 294
G +A +P +V+ LA G I S + F + R + K +F D +
Sbjct: 111 GDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVY 170
Query: 295 GDKSIPLYRVIDAQAP------LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEF 348
K I +V+P S L + + EF
Sbjct: 171 NGKEHDRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEF 230
Query: 349 AAVEQPVEAFTNILFSSGTTGEPKAIPWTNA-TPFKAAADAWCHMDIRKADIVAWPTNLG 407
+ + IL+SSGTTG PK I T + + H D+R D + + T G
Sbjct: 231 ERLPFDHPLW--ILYSSGTTGLPKCIVHGAGGTLLQHLKEHGLHCDLRPGDRLFYYTTTG 288
Query: 408 WMMGPWLVYASLLNGASIALYNGSPLGSGFA---KFVQDAKVTMLGVVPSIVRTWKSTNC 464
WMM WLV + LL+GA++ LY+GSPL + +T+ G + +
Sbjct: 289 WMMWNWLV-SGLLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAG- 346
Query: 465 ID---GYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV--------IEYCGGTEIGGGF 513
I+ +D SS+R STG + + W+ Y V I GGT+I G F
Sbjct: 347 IEPGRTHDLSSLRTILSTGSPLPPEGFDWV-----YSHVKSDVWLASIS--GGTDICGCF 399
Query: 514 ITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS------PLIFGASS 567
+ G+ +G + +G P+ V GEL + PL F
Sbjct: 400 VGGNPTLPVYRGEIQCRGLGMAVEAFDEEGKPVIGEV---GELVCTKPFPSMPLYF---- 452
Query: 568 TLLN----ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVS 623
N + + D YF P + RHGD + T G +GR+D T+N GG+++
Sbjct: 453 --WNDPDGSRYRDAYFDTFPG-----VWRHGDWIKITPHGGVIIYGRSDATLNPGGVRIG 505
Query: 624 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAV 683
+ EI R+ + V ++ +G DG E++ + V ++ L + SA+
Sbjct: 506 TAEIYRVVEKIPE-VEDSLVVGQEVDDGD-ERMPLFVKLREGVTLDDALVK---RIRSAI 560
Query: 684 QKKLNPLFKVSHVVPLPSLPRTATNKVM 711
+ L+P + ++ +P +P T + K +
Sbjct: 561 RAALSPRHVPAEIIAVPDIPYTLSGKKV 588
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 3e-51
Identities = 179/628 (28%), Positives = 286/628 (45%), Gaps = 75/628 (11%)
Query: 124 EFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCL 183
E S+ +P+ +W + E+ F P +L + P +W G +N + NC+
Sbjct: 12 EESIEDPDKFWAKLARELLDWFK-PFTKVL----DWSFP---PFYKWFVGGELNVSYNCV 63
Query: 184 SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMP 243
+ + D + I W EGD V+ +T +EL EV A L +LG+ KG +AI MP
Sbjct: 64 DRHLEARPDKVAIIW--EGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMP 121
Query: 244 MNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYR 303
M + + LA G I + F++ ++ R+ + AK + T D +RG K IPL
Sbjct: 122 MIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKA 181
Query: 304 VID---AQAPLA----IVIPAKGSSFSMKLRDG-DISWLDFLERVRKLKENEFAAVEQPV 355
++D + P++ +V+ G+ +G D+ W D + + E E E P+
Sbjct: 182 IVDEALEKCPVSVEHVLVVRRTGNPVPWV--EGRDVWWHDLMAKASAYCEPEPMDSEDPL 239
Query: 356 EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM------DIRKADIVAWPTNLGWM 409
F IL++SG+TG+PK + T + M DI+ DI ++GW+
Sbjct: 240 --F--ILYTSGSTGKPKGVLHTT-----GGYLLYAAMTMKYVFDIKDGDIFWCTADVGWI 290
Query: 410 MG-PWLVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVTMLGVVPSIVRTWK--STN 463
G ++VY L NGA+ ++ G+P +F ++ KVT+ P+ +R
Sbjct: 291 TGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDE 350
Query: 464 CIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK-------PVIEYCGGTEIGGGFITG 516
+ +D SS+R GS GE N + ++W YK P+++ TE GG IT
Sbjct: 351 WVKKHDLSSLRLLGSVGEPINPEAWMW-----YYKVVGKERCPIVDTWWQTETGGIMIT- 404
Query: 517 SLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 574
L A S P G + ++ +G P+ G G L + G T+ +H
Sbjct: 405 PLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEG-GYLVIKQPWPGMLRTIYG-DH 462
Query: 575 Y---DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 631
D YFS P GD R GY GR DD +N+ G ++ + EIE
Sbjct: 463 ERFVDTYFSPFPG-----YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIE--- 514
Query: 632 NAVDSN--VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNP 689
+A+ S+ V E A +G+P G + + V KD Y P D +LR V+K++ P
Sbjct: 515 SALVSHPAVAEAAVVGIPDDIKG-QAIYAFVTLKDG-YEPDD--ELRKELRKHVRKEIGP 570
Query: 690 LFKVSHVVPLPSLPRTATNKVMRRVLRK 717
+ K + +P LP+T + K+MRR+LRK
Sbjct: 571 IAKPDKIRFVPGLPKTRSGKIMRRLLRK 598
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 1e-50
Identities = 181/689 (26%), Positives = 276/689 (40%), Gaps = 118/689 (17%)
Query: 79 PDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVL 138
P W P E + + T +L + ++ +SV + E +W++V
Sbjct: 1 MGDPLWTPSAERIAASRM-----TAFIRWLAARRGLSFDDYAALWRWSVEDLEAFWQSVW 55
Query: 139 NEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRW 198
+ S P +L PG +W PGA +N A+N L R D I +
Sbjct: 56 DFFGVIGSTPYTVVLAGRRM-------PGARWFPGARLNYAENLLR---HRRDDRPAIIF 105
Query: 199 CDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258
E DG P + ++ ELR +V +A AL ALG+ G +A +P +VV LA
Sbjct: 106 RGE-DG--PRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASL 162
Query: 259 GYI---------VVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSI---PLYRVID 306
G I V + D F +E K + D G K+ +
Sbjct: 163 GAIWSSCSPDFGVQGVLDRFGQIE---------PKVLIAVDGYRYGGKAFDRRAKVAELR 213
Query: 307 AQAP---LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAV--EQPVEAFTNI 361
A P +V+P G + + G + W DFL E EF V + P+ I
Sbjct: 214 AALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEA-AELEFEPVPFDHPLW----I 268
Query: 362 LFSSGTTGEPKAI----PWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 417
L+SSGTTG PK I K H D+ D W T GWMM WLV +
Sbjct: 269 LYSSGTTGLPKCIVHGHGGILLEHLKELG---LHCDLGPGDRFFWYTTCGWMMWNWLV-S 324
Query: 418 SLLNGASIALYNGSPL---GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-------IDG 467
LL GA++ LY+GSP + + VT+ G + C +
Sbjct: 325 GLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYL-----DACEKAGLVPGET 379
Query: 468 YDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIE------YCGGTEIGGGFITGSLLQA 521
+D S++R GSTG + + W+ Y+ V GGT+I F+ G+ L
Sbjct: 380 HDLSALRTIGSTGSPLPPEGFDWV-----YEHVKADVWLASISGGTDICSCFVGGNPLLP 434
Query: 522 QSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS------PLIFGASSTLLN---- 571
+G + DG P+ V +GEL + PL F N
Sbjct: 435 VYRGEIQCRGLGMAVEAWDEDGRPV---VGEVGELVCTKPFPSMPLGF------WNDPDG 485
Query: 572 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 631
+ + D YF P + RHGD E T G +GR+D T+N GG+++ + EI R
Sbjct: 486 SRYRDAYFDTFPG-----VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQV 540
Query: 632 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLN-QLRMSFNSAVQKKLNPL 690
A+ VL++ IG PDG ++ + VV + L+ LR + ++ L+P
Sbjct: 541 EALPE-VLDSLVIGQEWPDGD-VRMPLFVVLAEG----VTLDDALRARIRTTIRTNLSPR 594
Query: 691 FKVSHVVPLPSLPRTATNKVM----RRVL 715
++ +P +PRT + K + +++L
Sbjct: 595 HVPDKIIAVPDIPRTLSGKKVELPVKKLL 623
|
Length = 655 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 5e-50
Identities = 124/535 (23%), Positives = 200/535 (37%), Gaps = 60/535 (11%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+T +EL +A AL ALG+ G +AI +P + ++ +LA + AG + V +
Sbjct: 37 GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPR 96
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
E++ L + AK + T L V +A + +V+
Sbjct: 97 LTPRELAYILNDAGAKVLITSAEFAA-----LLEAVAEALPVVLVVLLVGD--------A 143
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD- 387
D + + + A + +L++SGTTG PK + T+ AA
Sbjct: 144 DDRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGI 203
Query: 388 -AWCHMDIRKADIVAWPT----NLGWMMGPWLVYASLLNGASIALYNGSPL-GSGFAKFV 441
A + D+V G ++G L A LL G ++ L + P +
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIFGLIVG-LL--APLLGGGTLVLLSPEPFDPEEVLWLI 260
Query: 442 QDAKVTMLGVVPSIVRTW-KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV 500
+ KVT+L VP+ +R + D SS+R S G + R +
Sbjct: 261 EKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAI 320
Query: 501 IEYCGGTEIGGGFITGSLLQAQSLAAFST----PAMGCKLFILGNDGCPIPQNVPG-MGE 555
+E G TE L A P G ++ I+ DG + +PG +GE
Sbjct: 321 LEGYGLTETSPVVTINPP---DDLLAKPGSVGRPLPGVEVRIVDPDGG---EVLPGEVGE 374
Query: 556 LAL-SPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRH-----GDVFERTSGGYYRAHG 609
+ + P + Y+ P + GD+ GY G
Sbjct: 375 IWVRGPNVMKG------------YW-NRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVG 421
Query: 610 RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP 669
R D + GG + EIE + V E A +GVP G E++ VVV K
Sbjct: 422 RLKDLIISGGENIYPEEIEAVLAEHP-AVAEAAVVGVPDERWG-ERVVAVVVLKPGGDAE 479
Query: 670 PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724
+LR + ++K+L VV + LPRTA+ K+ RR LR++ +
Sbjct: 480 LTAEELR----AFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEPR 530
|
Length = 534 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 1e-47
Identities = 102/429 (23%), Positives = 162/429 (37%), Gaps = 39/429 (9%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS 271
T +EL +A AL ALG+ G +AI +P + VV LA++ AG V + S +
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 272 LEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDI 331
++ L S+AK + T D L + +V+ A +
Sbjct: 61 ERLAYILEDSEAKVLITDD---------ELLPKLLEVLLKLLVLLALIIVGDDGEGLDLL 111
Query: 332 SWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH 391
+ + A+ I+++SGTTG+PK + T+ AA
Sbjct: 112 DDELLAGASAEPPAPPVDP-DDL--AY--IIYTSGTTGKPKGVMLTHRNLLALAAGLAER 166
Query: 392 MDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPL-GSGFAKFVQDAKVTMLG 450
+ D V L + W ++ LL G ++ L L + ++ KVT+L
Sbjct: 167 FGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLY 226
Query: 451 VVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIG 510
VP+++R YD SS+R S GE + L R P++ G TE
Sbjct: 227 GVPTLLRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTE-T 285
Query: 511 GGFITGSLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASST 568
T +L + S P G ++ +L +G P+P GEL I G
Sbjct: 286 TVVATANLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPGEV--GEL----CIRGPGVA 339
Query: 569 L-------LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIK 621
L A + +G + R GD+ GY GR DD + + G +
Sbjct: 340 RGYLNDPELTAERFV--------EDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGER 391
Query: 622 VSSVEIERI 630
+ EIE +
Sbjct: 392 IEPGEIEAV 400
|
Length = 412 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 2e-47
Identities = 184/661 (27%), Positives = 276/661 (41%), Gaps = 143/661 (21%)
Query: 124 EFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPG-GQWLPGAFVNPAKNC 182
+ S+ +PE +W E+ + P +L SNP +W G +N + NC
Sbjct: 2 KESIEDPEEFWAEQAEELD--WFKPWDKVL--------DWSNPPFAKWFVGGKLNASYNC 51
Query: 183 LSVNSKRSLDDIV-IRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAID 241
L + K + V I W EG+ G +++T +EL EV A L +LG+ KG +AI
Sbjct: 52 LDRHLKAGRGNKVAIIW--EGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIY 109
Query: 242 MPMNVNSVVIYLA---------IVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLI 292
MPM + LA +V AG+ ++AD R+ +K+K + T D
Sbjct: 110 MPMIPELPIAMLACARIGAIHSVVFAGFSAEALAD---------RINDAKSKLLITADGG 160
Query: 293 IRGDKSIPLYRVIDAQAPLA------IVIPAKGSSFSMKLRDGDISWLDFLERVRKLKEN 346
RG K IPL ++D IV+ G M D+ W D + + E
Sbjct: 161 YRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEVPMV-EGRDVWWHDLMAKASPYCEP 219
Query: 347 EFAAVEQPVEAFTNILFSSGTTGEPKAIP--------WTNATPFKAAADA------WCHM 392
E E P+ F IL++SG+TG+PK + + T FK D WC
Sbjct: 220 EPMDAEDPL--F--ILYTSGSTGKPKGVVHTTGGYLVYAATT-FKYVFDIHPDDVYWC-- 272
Query: 393 DIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVTM 448
ADI GW+ G ++VY L NGA+ +Y G+P ++ V+ KVT+
Sbjct: 273 ---TADI-------GWITGHSYIVYGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKVTI 322
Query: 449 LGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK-------P 499
P+ +R +D SS+R GS GE N + ++W Y+ P
Sbjct: 323 FYTAPTAIRMLMRFGDEWPKKHDLSSLRLLGSVGEPINPEAWMW-----YYEVIGKERCP 377
Query: 500 VIEYCGGTEIGGGFIT----------GSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQN 549
+++ TE GG IT GS A P G + I+ +G +
Sbjct: 378 IVDTWWQTETGGHMITPLPGATPLKPGS-------ATR--PFPGVEPAIVDEEGNEVEGG 428
Query: 550 V----------PGMGELALSPLIFGASSTLLNANHY---DVYFSGMPSRNGQILRRHGDV 596
V PGM + I+G +H YFS P G GD
Sbjct: 429 VEGYLVIKRPWPGM---LRT--IYG--------DHERYVKTYFSKFP---GYYFT--GDG 470
Query: 597 FERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 656
R GYY GR DD +N+ G ++ + E+E + + V E A +G P G E +
Sbjct: 471 ARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPA-VAEAAVVGKPDEVKG-EAI 528
Query: 657 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716
V KD P D +LR V+K++ P+ ++ +P LP+T + K+MRR+LR
Sbjct: 529 YAFVTLKD-GVEPSD--ELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMRRILR 585
Query: 717 K 717
K
Sbjct: 586 K 586
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 1e-43
Identities = 166/660 (25%), Positives = 265/660 (40%), Gaps = 60/660 (9%)
Query: 82 PAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEM 141
P W PD + + + GE G+ + +SV + +WK V
Sbjct: 5 PLWQPDAQRIAQARMTRFQAWAGEHH-GAAEGG----YDALHRWSVDELDTFWKAVWEWF 59
Query: 142 STSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDE 201
FS P ++ + + PG QW PGA +N A+N L + + + + + DE
Sbjct: 60 DVRFSTPCARVVDDR-------TMPGAQWFPGARLNYAENLL----RAAGTEPALLYVDE 108
Query: 202 GDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYI 261
PV T ELR +V +A AL ALG+ G ++ +P +VV LA G I
Sbjct: 109 THEPAPV---TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAI 165
Query: 262 VVSIADSFASLEISARLRISKAKAIFTQDLIIRG----DKSIPLYRVIDAQAPLA--IVI 315
S + F + + R + + K +FT D D+ + V L + I
Sbjct: 166 WSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHI 225
Query: 316 PAKGSSFSMKLR-DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAI 374
P G + + DG + DF + E F + P + ILFSSGTTG PK I
Sbjct: 226 PYLGPRETEAPKIDGALDLEDFTAAAQA-AELVFEQL--PFDHPLWILFSSGTTGLPKCI 282
Query: 375 PWT-NATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPL 433
+ T + + H D+ D + + T GWMM WLV + L GA++ LY+GSP
Sbjct: 283 VHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWNWLV-SGLATGATLVLYDGSPG 341
Query: 434 ---GSGFAKFVQDAKVTMLGVVP---SIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDE 487
+ + T+ G R + +D S+++C STG D
Sbjct: 342 FPATNVLWDIAERTGATLFGTSAKYVMACRK-AGVHPARTHDLSALQCVASTGSPLPPDG 400
Query: 488 YLWLMGRALYKPVI---EYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC 544
+ W+ K + GGT+I F + + P +G + +G
Sbjct: 401 FRWVYDE--IKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGK 458
Query: 545 PIPQNVPGMGELALSPLIFGASSTLLN----ANHYDVYFSGMPSRNGQILRRHGDVFERT 600
P+ V GEL + + N + + D YF P + RHGD T
Sbjct: 459 PVTGEV---GELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPG-----VWRHGDWITLT 510
Query: 601 SGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVV 660
G HGR+D T+N G+++ S EI +D V E+ IG PDGG + V
Sbjct: 511 PRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDE-VRESLCIGQEQPDGGYRVVLFVH 569
Query: 661 VFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 720
+ + L++++ ++ L+P ++ +P +P T T K + +++ L
Sbjct: 570 LAPGATLDDALLDRIK----RTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQ 625
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 9e-43
Identities = 87/360 (24%), Positives = 151/360 (41%), Gaps = 35/360 (9%)
Query: 361 ILFSSGTTGEPKAIPWTN---ATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LVY 416
IL++SGTTG+PK + ++ +A A A + + D++ L ++G +
Sbjct: 5 ILYTSGTTGKPKGVVLSHRNLLANAQALAQAI---GLTEGDVLLSVLPLFHVVGGGSGLL 61
Query: 417 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 476
+LL G ++ LY G P F + ++ +VT+L VP++ GYD SS+R
Sbjct: 62 GALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLRLL 121
Query: 477 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKL 536
S GE + + P++E G TE T + + P G ++
Sbjct: 122 ISGGEPLSPELLERFE-ERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEV 180
Query: 537 FILGNDGCPIPQNVPG-MGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILR---- 591
++ +G P+P PG +GEL + Y++ P
Sbjct: 181 RVVDEEGKPLP---PGEVGELVVRG-----------PWVMKGYWNNPPETTAAATEDGWY 226
Query: 592 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651
R GD+ GY GR+ D + +GG V E+E + + V E A +GVP D
Sbjct: 227 RTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPA-VAEAAVVGVPDEDR 285
Query: 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 711
G E++ VV + +L+ + ++++L P + + LP+TA+ K+
Sbjct: 286 G-ERIVAFVVLRPG--ADALAEELK----AHLRERLAPYKVPRVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-39
Identities = 164/636 (25%), Positives = 264/636 (41%), Gaps = 99/636 (15%)
Query: 129 NPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSK 188
PE +W N + + P + +L ++ + P +W G +N N +
Sbjct: 2 EPEAFWAEQANLID--WYKPWEKVL-------DNSNPPFTRWFVGGRLNLCYNAVD---- 48
Query: 189 RSLDDIVIRWCDEGDGGLP-----------VKSMTLKELRAEVWLVAYALNALGLDKGSA 237
R ++G G ++ T EL EV +A L LG+ KG
Sbjct: 49 --------RHIEDGRGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDR 100
Query: 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDK 297
+ I MPM +V+ LA G I + FAS E+++R+ +K K I T I +
Sbjct: 101 VIIYMPMIPEAVIAMLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGR 160
Query: 298 SIPLYRVIDAQAPLAIVIPAK------GSSFSMKLRDGDISWLDFLERVRKLKENEFAAV 351
+P ++D L+ P K G + D+ W + + + R V
Sbjct: 161 VVPYKPLLDKALELSQHKPHKVLILNRGQVPAPLKPGRDLDWAELMAKARP--------V 212
Query: 352 E-QPVEAFTN---ILFSSGTTGEPKAIPWTNATPFKAAADAWCHM----DIRKADIVAWP 403
+ PVE+ T+ IL++SGTTG+PK + A A W M I+ D V W
Sbjct: 213 DCVPVES-TDPLYILYTSGTTGKPKGVVRDTGG--YAVALKW-SMRNIYGIKPGD-VFWA 267
Query: 404 T-NLGWMMG-PWLVYASLLNGASIALYNGSPLG----SGFAKFVQDAKVTMLGVVPSIVR 457
++GW++G ++VY LL+GA+ LY G P+G + + +++ V L P+ +R
Sbjct: 268 ASDVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIR 327
Query: 458 TWKSTN----CIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGF 513
+ + I YD SS+R GE + W+ + L PVI++ TE G
Sbjct: 328 AIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLEWI-EKTLGVPVIDHWWQTETGWPI 386
Query: 514 ITGSL-LQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 570
+ L+ + S P G + +L G + G + L PL G TL
Sbjct: 387 TANCVGLELLPIKPGSPGKPVPGYDVQVLDETGEELGPGELGNIVIKL-PLPPGCLLTLW 445
Query: 571 NA---------NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIK 621
N + Y+ S G E GY GR DD +N+ G +
Sbjct: 446 GDDERFKKLYLNKFPGYYDTGDS---------GYKDED---GYLFVMGRTDDVINVAGHR 493
Query: 622 VSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNS 681
+S+ E+E +V E A +GV G + +VV KD D +QL +
Sbjct: 494 LSTGEMEESVLK-HPDVAECAVVGVRDELKG-QVPLGLVVLKDD--CKIDADQLENEIVA 549
Query: 682 AVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
V++++ P+ +VV + LP+T + K++RR LRK
Sbjct: 550 LVREQIGPVAAFRNVVFVKRLPKTRSGKILRRTLRK 585
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (375), Expect = 3e-37
Identities = 184/658 (27%), Positives = 270/658 (41%), Gaps = 143/658 (21%)
Query: 126 SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSV 185
SV +PE +W + + P +L N P +W +N + NCL
Sbjct: 26 SVEDPEGFWAEQAKRLD--WFKPFDTVLDWNA--------PFIKWFEDGELNVSYNCLDR 75
Query: 186 NSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
+ K D + I W EGD + +T +EL EV A AL +LG+ KG +AI MPM
Sbjct: 76 HLKTRGDKVAIIW--EGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMI 133
Query: 246 VNSVVIYLA---------IVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGD 296
+ V LA +V G+ ++AD R+ + AK + T D +RG
Sbjct: 134 PEAAVAMLACARIGAVHSVVFGGFSAEALAD---------RIIDAGAKLVITADEGVRGG 184
Query: 297 KSIPLYRVID---AQAPL---AIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLKENEFA 349
K IPL +D A P IV+ G +G D+ W + + E E
Sbjct: 185 KPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWV--EGRDLWWHELVAGASDECEPEPM 242
Query: 350 AVEQPVEAFTNILFSSGTTGEPKAI--------PWTNATPFKAAADA------WCHMDIR 395
E P+ F IL++SG+TG+PK + + T K D WC
Sbjct: 243 DAEDPL--F--ILYTSGSTGKPKGVLHTTGGYLVYAAMT-MKYVFDYKDGDVYWC----- 292
Query: 396 KADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNG---SPLGSGFAKFVQDAKVTMLGV 451
AD+ GW+ G ++VY L NGA+ ++ G P F + + KVT+
Sbjct: 293 TADV-------GWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYT 345
Query: 452 VPSIVRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG--- 506
P+ +R + YD SS+R GS GE N + + W Y V+ GG
Sbjct: 346 APTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEW------YYKVV---GGERC 396
Query: 507 --------TEIGGGFITGSLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNV------ 550
TE GG IT L A L S P G + ++ +G P+
Sbjct: 397 PIVDTWWQTETGGIMIT-PLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVI 455
Query: 551 ----PGMGELALSPL--IFGASSTLLNANH---YDVYFSGMPSRNGQILRRHGDVFERTS 601
PGM + I+G +H YFS G GD R
Sbjct: 456 KDPWPGM-------MRTIYG--------DHERFVKTYFSTFK---GMYFT--GDGARRDE 495
Query: 602 GGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQLTIV 659
GYY GR DD +N+ G ++ + EIE +A+ ++ V E A +G P G + +
Sbjct: 496 DGYYWITGRVDDVLNVSGHRLGTAEIE---SALVAHPKVAEAAVVGRPDDIKG-QGIYAF 551
Query: 660 VVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
V K P D +LR + V+K++ P+ K + P LP+T + K+MRR+LRK
Sbjct: 552 VTLKGG-EEPSD--ELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRK 606
|
Length = 637 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 145 bits (366), Expect = 4e-36
Identities = 173/661 (26%), Positives = 274/661 (41%), Gaps = 83/661 (12%)
Query: 116 ISSFSNFQEF---SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLP 172
+SS + E SV +P +W + ++ + EN + +W
Sbjct: 26 VSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKWEGDEVCSENLDVRK--GPISIEWFK 83
Query: 173 GAFVNPAKNCLSVNSKRSL-DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
G N NCL N + D I I W EG+ S+T EL V +A L +G
Sbjct: 84 GGKTNICYNCLDRNVEAGNGDKIAIYW--EGNEPGFDASLTYSELLDRVCQLANYLKDVG 141
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG A+ I +PM + + LA G + + F++ ++ R+ K K + T +
Sbjct: 142 VKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNA 201
Query: 292 IIRGDKSIPLYRVIDAQAPLAIVIPAKG-----------SSFSMKLRDG------DISWL 334
+ RG K+I L ++DA A+ AK + +MK D D+ W
Sbjct: 202 VKRGPKTINLKDIVDA----ALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQ 257
Query: 335 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT-------NATPFKAAAD 387
D + E E+ E P+ +L++SG+TG+PK + T AT FK A
Sbjct: 258 DVVPNYPTKCEVEWVDAEDPL----FLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYA-- 311
Query: 388 AWCHMDIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSP--LGSGFA-KFVQD 443
D + D+ + GW+ G ++ Y +LNGA++ ++ G+P SG V
Sbjct: 312 ----FDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDK 367
Query: 444 AKVTMLGVVPSIVRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLW---LMGRALYK 498
KVT+ P++VR+ + + S+R GS GE N + W ++G +
Sbjct: 368 YKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC- 426
Query: 499 PVIEYCGGTEIGGGFIT---GSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 555
P+ + TE GG IT G+ Q A F P G + I+ G I G
Sbjct: 427 PISDTWWQTETGGFMITPLPGAWPQKPGSATF--PFFGVQPVIVDEKGKEIEGECSGY-- 482
Query: 556 LALSPLIFGASSTLL--NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADD 613
L + GA TL + + YF GD R GYY GR DD
Sbjct: 483 LCVKKSWPGAFRTLYGDHERYETTYFKPFAG-----YYFSGDGCSRDKDGYYWLTGRVDD 537
Query: 614 TMNLGGIKVSSVEIERICNAVDSNVL--ETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPD 671
+N+ G ++ + E+E +A+ S+ E A +G+ G V + + Y+
Sbjct: 538 VINVSGHRIGTAEVE---SALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYS--- 591
Query: 672 LNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK----QLAQLDQNSK 727
+LR S V+ ++ + P LP+T + K+MRR+LRK QL +L S
Sbjct: 592 -EELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTST 650
Query: 728 L 728
L
Sbjct: 651 L 651
|
Length = 666 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 1e-33
Identities = 166/638 (26%), Positives = 261/638 (40%), Gaps = 79/638 (12%)
Query: 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVN 177
+ F + S+ PE +W + PPQ IL ++ + P +W G N
Sbjct: 2 RYEEFYQRSIEQPEAFWAE--QARRIDWQTPPQRIL-------DYSNPPFARWFAGGRTN 52
Query: 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPV----------KSMTLKELRAEVWLVAYAL 227
N L R DE L + +++T ++L EV + A AL
Sbjct: 53 LCHNALD------------RHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASAL 100
Query: 228 NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIF 287
ALG+ +G + I MPM +V LA G I + FAS ++ R+ + K I
Sbjct: 101 RALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIV 160
Query: 288 TQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKL--------RDGDISWLDFLER 339
+ D +RG K IP ++DA A P L RD D + L
Sbjct: 161 SADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAALR---- 216
Query: 340 VRKLKENEFAAVEQPVEAFTN-----ILFSSGTTGEPKAIPW-TNATPFKAAADAWCHMD 393
++E A V PVE + IL++SGTTG+PK + A W
Sbjct: 217 ----TQHEDAQV--PVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFG 270
Query: 394 IRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPL---GSGFAKFVQDAKVTML 449
IR ++ +++GW++G ++VYA LL GA+ LY G P + V+ V +
Sbjct: 271 IRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTM 330
Query: 450 GVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGT 507
P+ +R K + +D SS+ GE + W+ L KPVI+ T
Sbjct: 331 FSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWI-TDGLGKPVIDNYWQT 389
Query: 508 EIGGGFIT---GSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIF 563
E G + G L+ L + P G L +L G P N G+ + PL
Sbjct: 390 ETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVV-PPLPP 448
Query: 564 GASSTLLN--ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIK 621
G ST+ A Y+S + L D R GY GR DD +N+ G +
Sbjct: 449 GCLSTVWGDDARFLKTYWSHFK----RPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHR 504
Query: 622 VSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIV-VVFKDSNYT--PPDLNQLRMS 678
+ + EIE + +V E A +GV G Q+ +V + K+S+ D + +
Sbjct: 505 LGTREIEESV-SSHPSVAEVAVVGVHDELKG--QVAVVFAILKESDSAGDAHDPHAVETG 561
Query: 679 FNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716
V ++L + + + V + +LP+T + K++RR ++
Sbjct: 562 MMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQ 599
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 3e-29
Identities = 127/562 (22%), Positives = 193/562 (34%), Gaps = 128/562 (22%)
Query: 189 RSLDDIVIRWCDEGDGGLPV----KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM 244
++L D++ V + +T +EL A V +A L ALG+ G + + +P
Sbjct: 15 QTLGDLLAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPN 74
Query: 245 NVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRV 304
V++Y A+ G I V + + EI R S+AKA D G L R
Sbjct: 75 VAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIAD-RFSGFDYAALARE 133
Query: 305 IDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFS 364
+ + P D+ A S
Sbjct: 134 LLEELP-------------------DV-------------------------AL--FQLS 147
Query: 365 SGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMM---GPWLVYASLLN 421
GTTG PK IP T+ +A + + + P L+ A L
Sbjct: 148 GGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAG 207
Query: 422 GASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGE 481
G + + SP ++ KVT +VP+++ W D D SS+R G
Sbjct: 208 GTVVLHHPPSP--DVAFPLIEREKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQVGG- 264
Query: 482 ASNVDEYLWLMGR---ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLF- 537
+ + L R L P+ + G E G T L M +
Sbjct: 265 -APLSP--ELARRVEERLGCPLQQVFGMAE-GLVNYTR-------LDDPPDVIMRTQGRP 313
Query: 538 --------ILGNDGCPIPQNVPGMGELALSPLIFGASSTL--------LNANHY--DVYF 579
I+ + G P+P G L+ T+ NA + D ++
Sbjct: 314 ISPADEIRIVDDQGEPVPPGEVGE-------LLTRGPYTIRGYYRAPEHNARAFTDDGFY 366
Query: 580 SGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--N 637
R GD+ + GYYR GR D +N GG K+S EIE N + S
Sbjct: 367 ------------RTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIE---NLLLSHPA 411
Query: 638 VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLR---MSFNSAVQKKLNPLFKV- 693
V + A +G+P G E++ VV + P L +LR A FK+
Sbjct: 412 VADAAVVGMPDEVLG-ERICAFVVPRGG--AAPTLAELRAFLREQGLAK-------FKLP 461
Query: 694 SHVVPLPSLPRTATNKVMRRVL 715
+ + SLP T KV ++ L
Sbjct: 462 DRLEVVDSLPLTPVGKVDKKAL 483
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-27
Identities = 134/538 (24%), Positives = 207/538 (38%), Gaps = 81/538 (15%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ +T EL A V A AL ALG+ KG +AI P + + V+ L + AG +VV +
Sbjct: 29 QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTR 88
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPL--AIVIPAKGSSFSMKL 326
+ + E + L AKA+F L + + + P +VI
Sbjct: 89 YTADEAAYILARGDAKALFVLGLF------LGVDYSATTRLPALEHVVICETEEDDPHT- 141
Query: 327 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA 386
+ ++ DFL + A E + +ILF+SGTTG PK T+ AA
Sbjct: 142 -EKMKTFTDFLAA----GDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAA 196
Query: 387 DAWCH-MDIRKAD--IVAWPT--NLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKF- 440
D W + + + D + A P G+ G A L+ GA+I PL F
Sbjct: 197 D-WAEYLGLTEGDRYLAANPFFHVFGYKAG-VN--APLMRGATIL-----PL----PVFD 243
Query: 441 -------VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493
++ ++T+L P++ + D SS+R TG AS L
Sbjct: 244 PDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLR-LAVTGAASMPVALLERFE 302
Query: 494 RAL-YKPVIEYCGGTEIGGGFITGSLL--QAQSLAAFS-TPAMGCKLFILGNDGCPIPQN 549
L V+ G +E G T + L +++A T G + I+ G +P
Sbjct: 303 SELGVDIVLTGYGLSE-ASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVG 361
Query: 550 VPGMGELALSPLIFGASSTLLNANHYDV---YFSGMPSRNGQILR-----RHGDVFERTS 601
GEL L+ G +V Y+ P + GD+
Sbjct: 362 EV--GEL----LVRG----------PNVMKGYY-DDPEATAAAIDADGWLHTGDLGRLDE 404
Query: 602 GGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVV 661
GY R D +GG V E+E + + V E A IGVP G VV+
Sbjct: 405 EGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPA-VAEAAVIGVPDERLGEVGKAYVVL 463
Query: 662 FKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQ 718
+ T +L +++ K +KV + L LP+ AT KV++R LR++
Sbjct: 464 KPGAELTEEEL----IAYCREHLAK----YKVPRSIEFLDELPKNATGKVLKRALREK 513
|
Length = 513 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-26
Identities = 162/643 (25%), Positives = 260/643 (40%), Gaps = 89/643 (13%)
Query: 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCIL-RENPNGENHLSNPGGQWLPGAFV 176
S+S F + S+ +PE +W + + P +L NP P +W G
Sbjct: 3 SYSEFYQRSIDDPEAFWAEQARRID--WQTPFTQVLDYSNP--------PFARWFVGGRT 52
Query: 177 NPAKNCLSVNSKRSLDDIVIRWCD-EGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKG 235
N N + + + + + + E D ++ T ++L EV +A L +LG+ +G
Sbjct: 53 NLCHNAVDRHLAKRPEQLALIAVSTETD---EERTYTFRQLHDEVNRMAAMLRSLGVQRG 109
Query: 236 SAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRG 295
+ I MPM + LA G I + FAS ++AR+ +K I + D RG
Sbjct: 110 DRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRG 169
Query: 296 DKSIPLYRVIDAQAPLAIVIPAKGSSFS-----MKLRDG-DISWLDFLERVRKLKENEFA 349
K +P ++D LA P M G D+ + +
Sbjct: 170 GKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQ--------HL 221
Query: 350 AVEQPVE-----AFTNILFSSGTTGEPK-----------AIPWTNATPF--KAAADAWCH 391
PVE + IL++SGTTG+PK A+ + T F KA +C
Sbjct: 222 GARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCA 281
Query: 392 MDIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPL---GSGFAKFVQDAKVT 447
DI GW++G ++VYA LL G + +Y G P + + V+ KV
Sbjct: 282 SDI------------GWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVN 329
Query: 448 MLGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDE--YLWLMGRALYKPVIEY 503
+ P+ +R K + +D SS+R GE +DE W+ AL PVI+
Sbjct: 330 RMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEP--LDEPTASWISE-ALGVPVIDN 386
Query: 504 CGGTEIGGGFIT---GSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALS 559
TE G + G + L + P G + +L G P N G+ L +
Sbjct: 387 YWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGV--LVIE 444
Query: 560 -PLIFGASSTLL--NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMN 616
PL G T+ + Y+S G+ + D R + GYY GR DD +N
Sbjct: 445 GPLPPGCMQTVWGDDDRFVKTYWSLF----GRQVYSTFDWGIRDADGYYFILGRTDDVIN 500
Query: 617 LGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIV-VVFKDSNY--TPPDLN 673
+ G ++ + EIE + V E A +GV G Q+ + VV KDS+
Sbjct: 501 VAGHRLGTREIEE-SISSHPAVAEVAVVGVKDALKG--QVAVAFVVPKDSDSLADREARL 557
Query: 674 QLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716
L + V +L + + + V + +LP+T + K++RR ++
Sbjct: 558 ALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQ 600
|
Length = 629 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 129/542 (23%), Positives = 210/542 (38%), Gaps = 59/542 (10%)
Query: 192 DDIVIRWCDEGDGG-----LPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV 246
+ R +EG G S+T EL+ EV AL LG+++ + + + +
Sbjct: 7 VYFLDRHLNEGRGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTP 66
Query: 247 NSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVID 306
+ + G + V I + L S+A+ L+I + L+ V+
Sbjct: 67 EFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARV-----LVISEE----LWEVLK 117
Query: 307 AQAPLAIVIPAKGSSFSMK---LRDGDISWLDFLER-VRKLKENEFAAVEQPVE-AFTNI 361
PA ++ + G + + E AA + AF
Sbjct: 118 ---------PALQKDPHLRHVIVVGGAGPGALSYAQLIATAAEELEAAATSADDMAFW-- 166
Query: 362 LFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIVAWPTNL--GWMMGPWLVYA 417
L+SSG+TG PK + + A+A+ + I + D+V L + +G L +
Sbjct: 167 LYSSGSTGRPKGVVHLHHDM-LVTAEAYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFP 225
Query: 418 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 477
L GA+ L P ++ K T+ VP++ + D SS+R
Sbjct: 226 -LSVGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCV 284
Query: 478 STGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKL 536
S GEA + + + L+ I + G TE+ F++ + A P G ++
Sbjct: 285 SAGEA--LPAEIGYRWKELFGLEILDGIGSTEMLHIFLS-NRPGAVKYGTSGKPVPGYEV 341
Query: 537 FILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDV 596
++ DG + G EL + G SS N + + G+ R GD
Sbjct: 342 KLVDEDGEEVADGEIG--EL----WVRGDSSAAGYWNRRE---KTRETFVGEWTRT-GDK 391
Query: 597 FERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 656
+ R GYY GR+DD + + GI VS E+E VLE A +G D G +
Sbjct: 392 YYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVED-ALLQHPAVLEAAVVGAEDED-GLTKP 449
Query: 657 TIVVVFKDSNYTPPDL-NQLRMSFNSAVQKKLNPLFKVSH-VVPLPSLPRTATNKVMRRV 714
VV KD P+L +L+ V+ KL P +K + + LP+TAT K+ R
Sbjct: 450 KAFVVLKDGYQPSPELETELK----DFVKDKLAP-YKYPRWIEFVDELPKTATGKIQRFK 504
Query: 715 LR 716
LR
Sbjct: 505 LR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 95/371 (25%), Positives = 155/371 (41%), Gaps = 45/371 (12%)
Query: 361 ILFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIV--AWPTNLGWMMGPWLVY 416
L++SGTTG+PK + + P A+A+ + ++ D + + + +G L++
Sbjct: 96 WLYTSGTTGKPKGVMHRHRDPL-TFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLF 154
Query: 417 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWS----- 471
L +GAS L G P + + T+L VP++ R ++ S
Sbjct: 155 P-LFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYR-----ALLESGAGSAPLFR 208
Query: 472 SIRCFGSTGEASNVDEY-LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP 530
S+R S GEA W A +++ G TE+ FI+ A+ P
Sbjct: 209 SVRLCVSAGEALPAGLAERWA--EATGIEILDGIGSTEVLHIFISNRPGAAR-PGTTGRP 265
Query: 531 AMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQIL 590
G + ++ G +P G +L + G S + +P + + L
Sbjct: 266 VPGYEARLVDESGREVPAGTVG--DL----WVRGPSLA--------PGYWNLPEKTQRTL 311
Query: 591 R----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 646
R R GD F R + G+YR GRADD + + G VS +E+E + V E A + V
Sbjct: 312 RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPA-VAEAAVVAV 370
Query: 647 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSH-VVPLPSLPRT 705
P DG +L VV + L + F ++++L +K + L +LPRT
Sbjct: 371 PDEDGL-VRLKAFVVPRPGEAIQQLLERDLHRF---LRERL-APYKCPRQIEFLDTLPRT 425
Query: 706 ATNKVMRRVLR 716
AT K+ R LR
Sbjct: 426 ATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 8e-23
Identities = 132/533 (24%), Positives = 202/533 (37%), Gaps = 119/533 (22%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
++ ELR + VA L LG+ G +A +P VV LA G I V + +F
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAF- 59
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGD 330
G K+I YR+ + A + + A R
Sbjct: 60 ------------------------GPKAIE-YRLGHSGAKVVVTNAA--------NRG-- 84
Query: 331 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC 390
KL ++ FA +++SGTTG PK +P P A A +
Sbjct: 85 -----------KLDDDLFA-----------QMYTSGTTGLPKGVPV----PLNALAAFYA 118
Query: 391 HM----DIRKADIVAWPT-NLGWMMGPWLVYA---SLLNGASIALYNGSPLGSGFAKFVQ 442
+M D+R D+ W + GW G L YA L G + G ++
Sbjct: 119 YMRYAIDLRDDDVF-WNIADPGWAYG--LYYAITGPLAMGITTVFLEGGFTAENTYDVLE 175
Query: 443 DAKVTMLGVVPSIVRTWKSTNC-IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVI 501
VT P+ R + +R S GE N + W L +
Sbjct: 176 RLGVTNFAGSPTAYRMLMAAGADAAARIKLKLRVASSAGEPLNPEVVRWF-QANLGVTIH 234
Query: 502 EYCGGTEIGGGFITGSLLQAQSLAAFSTPA--MGC-----KLFILGNDGCPIPQNVPGMG 554
++ G TE TG + A A MG ++ +L +DG P+ PG
Sbjct: 235 DHYGQTE------TGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLDDDGQPLADGEPG-- 286
Query: 555 ELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGR 610
+LA I ASS LL + Y P + +++ GD+ ER GY+ GR
Sbjct: 287 QLA----IDVASSPLLWFSGY----WDDPEKTAELIAGRWYVTGDLVERDEDGYFWFIGR 338
Query: 611 ADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPP 670
ADD + G ++ ++E V E A +GVP P G E + VV K+
Sbjct: 339 ADDVIISAGYRIGPFDVES-ALLEHPAVAEAAVVGVPDPLRG-EIVKAFVVLKEGYAGSD 396
Query: 671 DL-NQLRMSFNSAVQKKLNPLFKVSHVVP-----LPSLPRTATNKVMRRVLRK 717
+L +L+ V+K+L+ +H P +P+LP+T + K+ R +LR+
Sbjct: 397 ELAEELQ----LFVKKRLS-----AHAYPREVEFVPALPKTPSGKIQRFLLRQ 440
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 93/381 (24%), Positives = 139/381 (36%), Gaps = 70/381 (18%)
Query: 361 ILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKAD--IVAWP---TNLGWMMGPWLV 415
IL++SGTTG PK + T+A AA A + +R D + P N V
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAY----SV 141
Query: 416 YASLLNGASIALYNG-SPLGSGFAKFVQDAKVT---MLGVVPSIVRTWKSTNCIDGYDWS 471
YA+LL GA++ L S S F V+ T +LG + +I+ K D D
Sbjct: 142 YAALLVGATLVLLPRFSA--SRFWDQVRKHGATVFNLLGAMAAIL--MKQPPSPDDRD-H 196
Query: 472 SIRCFGSTGEASNVDEYLWLMGRALYKP--------VIEYCGGTEIGGGFITGSLLQAQS 523
+R + A++ ++E G TE G I
Sbjct: 197 PLRFVFGAP-----------LPAAIWPAFEERFGVKLVEGYGMTETGVPIIAP--GDPAP 243
Query: 524 LAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 583
+ P G ++ I+ DG +P G EL ++ + +Y GMP
Sbjct: 244 PGSCGRPRPGVEVRIVDEDGREVPPGEVG--EL----VVRPRRPWAMFKGYY-----GMP 292
Query: 584 SRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVL 639
+ R GD R G+ R D + G +SS E+E A + V
Sbjct: 293 EATAKAWRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPA-VA 351
Query: 640 ETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQL---RMSFNSAVQKKLNPLFKVSHV 696
E A + VP G E +VV+ P L + R+ P F V
Sbjct: 352 EAAVVAVPSELGEDEVKAVVVLRPGETLDPEALLEFCRDRL-----------PYFMVPRY 400
Query: 697 VP-LPSLPRTATNKVMRRVLR 716
+ + LP+T T K+ + LR
Sbjct: 401 IEFVDELPKTPTEKIQKAELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-22
Identities = 119/554 (21%), Positives = 206/554 (37%), Gaps = 109/554 (19%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSIAD 267
T EL V +A AL ALG+ KG +A+ + NS + Y A+ G ++ I
Sbjct: 32 TTYAELDERVNRLANALRALGVKKGDRVAV---FDWNSHEYLEAYFAVPKIGAVLHPINI 88
Query: 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYR------------VIDAQAPLAIVI 315
EI+ L ++ + + + +PL +++ P A +
Sbjct: 89 RLKPEEIAYILNDAEDRVVLV------DSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLA 142
Query: 316 PAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIP 375
P G + L DF + + EN+ AA +L++SGTTG PK +
Sbjct: 143 PEVGE-YEE-LLAAASDTFDFPD----IDENDAAA----------MLYTSGTTGHPKGVV 186
Query: 376 WTNATPF--KAAADAWCHMDIRKAD--IVAWPTN----LGWMMGPWLVYASLLNGASIAL 427
++ F A AW + + + D +V P G Y +L+ GA +
Sbjct: 187 LSHRNLFLHSLAVCAW--LKLSRDDVYLVIVPMFHVHAWGLP------YLALMAGAKQ-V 237
Query: 428 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDE 487
++ +VT VP+I + D+SS+R G A
Sbjct: 238 IPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAA----- 292
Query: 488 YLWLMGRALYK--------PVIEYCGGTEIGGGFITGSLLQAQSLAAFS------TPAMG 533
+ AL + +++ G TE ++ + Q ++ P G
Sbjct: 293 ----LPPALLREFKEKFGIDLVQGYGMTETSP-VVSVLPPEDQLPGQWTKRRSAGRPLPG 347
Query: 534 CKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLNANHYDVYFSGMPSRNGQILR- 591
+ I+ +DG +P + +GE+ + P + Y+ P + +
Sbjct: 348 VEARIVDDDGDELPPDGGEVGEIIVRGPWLMQG------------YW-NRPEATAETIDG 394
Query: 592 ---RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 648
GDV GY R D + GG + E+E + V E A IGVP
Sbjct: 395 GWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPA-VAEVAVIGVPD 453
Query: 649 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTAT 707
G + +VV+ + +L ++ +L FK+ + + LPRT+
Sbjct: 454 EKWGERPVAVVVLKPGATLDAKELRAF-------LRGRLAK-FKLPKRIAFVDELPRTSV 505
Query: 708 NKVMRRVLRKQLAQ 721
K+++RVLR+Q A+
Sbjct: 506 GKILKRVLREQYAE 519
|
Length = 521 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 1e-21
Identities = 104/423 (24%), Positives = 180/423 (42%), Gaps = 50/423 (11%)
Query: 334 LDFLERVRKLKEN------EFAAVE--QPVEAFTNILFSSGTTGEPKAIPWTNATPFKAA 385
L + + ++K+KEN E+ VE P+ IL++SGTTG KA+ +N
Sbjct: 228 LSWYDEIKKIKENNQSPFYEYVPVESSHPL----YILYTSGTTGNSKAVVRSNGPHLVGL 283
Query: 386 ADAWCHMDIRKADIVAWP-TNLGWMMGPWLVYASLLNGASIALYNGSPLGSG-----FAK 439
W + + V + +++GW+ +Y SL G + ++ G + +
Sbjct: 284 KYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWN 343
Query: 440 FVQDAKVTMLGVVPSIVRTWK-----STNCIDGYDWSSIR--CFGSTGEASNVDEYLWLM 492
++ KVT +P +R +T YD S+++ G ++ EY+
Sbjct: 344 TIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYI--E 401
Query: 493 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPG 552
+ K Y G TEIG ++ A P++ K IL DG + N
Sbjct: 402 NKLKIKSSRGY-GQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVN--E 458
Query: 553 MGELALS-PLIFGASSTLL-NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGR 610
+GE+A P+ ++T N + FS P GD+ + GYY R
Sbjct: 459 IGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPG-----YYNSGDLGFKDENGYYTIVSR 513
Query: 611 ADDTMNLGGIKVSSVEIERICNAVDS-----NVLETAAIGVPPPDGGPEQLTIVVVFKDS 665
+DD + + G KV IE S VLE +IG+ PD + ++V+ +D
Sbjct: 514 SDDQIKISGNKVQLNTIE------TSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQ 567
Query: 666 NYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 725
+ DLN+L+ N+ + + + L + ++ + LP+T T K+ R+++ K L D N
Sbjct: 568 SNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLN--DSN 625
Query: 726 SKL 728
+L
Sbjct: 626 YQL 628
|
Length = 647 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-21
Identities = 119/530 (22%), Positives = 191/530 (36%), Gaps = 115/530 (21%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
+T EL +A AL LG+ G +A +P VV+YLA G ++ I +
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60
Query: 270 ASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVID-AQAPLAIVIPAKGSSFSMKLRD 328
E+ LR ++A+ +F D +R D A P
Sbjct: 61 RERELGFILRQARARVLFVPDE----------FRGFDYAAMP------------------ 92
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA 388
D++ L L++SGTTGEPK + T+ T A +
Sbjct: 93 DDVALL---------------------------LYTSGTTGEPKGVMHTHNTLL-AEVRS 124
Query: 389 WC-HMDIRKADIVAWPTNLGWMMGPWL-VYASLLNGASIALYN-GSPLGSGFAKFVQDAK 445
+ + + D+V P+ L + G + LL GA++ L + P + + +++
Sbjct: 125 YVERLGLTPDDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDP--ARALELIREHG 182
Query: 446 VT-MLGVVP---SIVRTWKSTNCIDGYDWSSIRCFGSTGE------ASNVDEYLWLMGRA 495
VT +G P ++ + G D S+R F G A E L
Sbjct: 183 VTFTMGATPFLADLLAAADAA----GPDLPSLRVFLCGGAPVPRELARRAAEALGAK--- 235
Query: 496 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST---PAMGCKLFILGNDGCPIPQNVPG 552
V+ G TE +T +T P G ++ I+ +DG +P G
Sbjct: 236 ----VVRAYGMTE--VPLVTVGTPDDPDDKRAATDGRPVPGVEVRIVDDDGNDVPPGEEG 289
Query: 553 MGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAH 608
P +F Y P R GD+ + GY R
Sbjct: 290 E-LQVRGPQLFLG------------YL-DPPDNTEAFTDDGWFRTGDLGRLDADGYLRIT 335
Query: 609 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYT 668
GR D + GG +S+ EIE + + V E A + +P G E++ VVV
Sbjct: 336 GRKKDIIIRGGENISAREIEDLLLRHPA-VAEVAVVAMPDERLG-ERVCAVVVPAPG--A 391
Query: 669 PPDLNQLRMSFNSA-VQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
L +L + + K+ P + + +LPRT + KV + LR+
Sbjct: 392 SLTLAELTEHLAAQGLAKQKWP----ERLEVVDALPRTPSGKVQKFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 3e-21
Identities = 125/521 (23%), Positives = 200/521 (38%), Gaps = 96/521 (18%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS 271
+ +EL+ A L +LG+ KG + +P + V L + G + + +F
Sbjct: 2 SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61
Query: 272 LEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDI 331
I RL + +AK + T + LY D + P +
Sbjct: 62 EPIRDRLELGEAKVLIT---------TPELYERTDPEDPALL------------------ 94
Query: 332 SWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH 391
F+SGTTG+PK + + A A
Sbjct: 95 ------------------------------HFTSGTTGKPKGVLHVHRAVVAHYATARYV 124
Query: 392 MDIRKADIVAWPT-NLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTML 449
+D+R D+ W T + GW+ G + + A LLNG ++ + G + +++ KVT+
Sbjct: 125 LDLRPDDVY-WCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTVW 183
Query: 450 GVVPSIVRTWKSTN--CIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGT 507
P+ +R YD SS+R S GE N + +W + L P+ + T
Sbjct: 184 YTAPTALRMLMRAGPELAARYDLSSLRHIASVGEPLNPEVVVWGE-KVLGMPIHDTWWQT 242
Query: 508 EIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG---CPIPQNVPG-MGELALS---P 560
E G I + P G + ++ DG P+ PG +GELAL P
Sbjct: 243 ETGAIMIANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTG--PGQVGELALKPGWP 300
Query: 561 LIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGI 620
+F L N Y F +G L GD+ R GY+ GRADD + G
Sbjct: 301 SMF--RGYLGNEERYASSF-----VDGWYLT--GDLAYRDEDGYFWFVGRADDVIKTAGH 351
Query: 621 KVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFN 680
V E+E + V E IG P P G E + V + + P + +LR
Sbjct: 352 LVGPFEVESALMEHPA-VAEAGVIGKPDPVAG-EIVKAFVSLR-PGFEPSE--ELRRELL 406
Query: 681 SAVQKKLNPLFKVSHVVP-----LPSLPRTATNKVMRRVLR 716
+ +++L + V P + +LP+T + K+MRR+L+
Sbjct: 407 TFARQRLG-----AAVAPREIHFVDNLPKTRSGKIMRRLLK 442
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 1e-20
Identities = 146/583 (25%), Positives = 228/583 (39%), Gaps = 100/583 (17%)
Query: 170 WLPGAFVNPAKNCLS--VNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYAL 227
WL VN A + + R D + +R+ D + T KEL+ A L
Sbjct: 36 WLETGKVNIAYEAIDRHADGGRK-DKVALRYLDAS----RKEKYTYKELKELSNKFANVL 90
Query: 228 NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIF 287
LG++KG + I MP L + G IV + ++F + RL S+AK +
Sbjct: 91 KELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLI 150
Query: 288 TQDLIIRGDKSIPLYRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKEN 346
T + L R P L V+ + G + + +E+ +
Sbjct: 151 TTPAL--------LERKPADDLPSLKHVLLVGEDV---EEGPGTLDFNALMEQASDEFDI 199
Query: 347 EFAAVEQPVEAFTNIL-FSSGTTGEPK-AIPWTNATPFKAAADAWCHMDIRKADIVAWPT 404
E+ E IL ++SG+TG+PK + NA + +D+ + D+ W T
Sbjct: 200 EWTDREDGA-----ILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYV-LDLHEDDVY-WCT 252
Query: 405 -NLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKS- 461
+ GW+ G + ++A LNGA+ + G + + ++D KVT+ P+ +R
Sbjct: 253 ADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGA 312
Query: 462 -TNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ 520
+ + YD SS+R S GE N + W M + P+ + TE GG I
Sbjct: 313 GDDLVKKYDLSSLRHILSVGEPLNPEVVRWGM-KVFGLPIHDNWWMTETGGIMIA----- 366
Query: 521 AQSLAAFSTPAM------------GCKLFILGNDGCPIPQNVPGMGELALSPLIFGASST 568
+ PAM G + I+ + G +P N MG LA+ G S
Sbjct: 367 -------NYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNR--MGNLAIKK---GWPSM 414
Query: 569 ----LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSS 624
N Y+ YF+G + GD GY+ GR DD + G +V
Sbjct: 415 MRGIWNNPEKYESYFAG-----DWYVS--GDSAYMDEDGYFWFQGRVDDVIKTSGERVGP 467
Query: 625 VEIERICNAVDSNVLETAA------IGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMS 678
E+E S ++E A IG P P G E + V + Y P + +L+
Sbjct: 468 FEVE-------SKLMEHPAVAEAGVIGKPDPVRG-EIIKAFVALRP-GYEPSE--ELKEE 516
Query: 679 FNSAVQKKLNPLFKVSHVVP-----LPSLPRTATNKVMRRVLR 716
V+K L H P LP+T + K+MRRVL+
Sbjct: 517 IRGFVKKGLGA-----HAAPREIEFKDKLPKTRSGKIMRRVLK 554
|
Length = 570 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 1e-19
Identities = 113/518 (21%), Positives = 188/518 (36%), Gaps = 54/518 (10%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+T +L + +A L LGL +G +A+ P ++ ++L + AG IV + S
Sbjct: 9 TELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPS 68
Query: 269 FASLEISARLRISKAKAIFTQ-DLIIRG----DKSIPLYRVIDAQAPLAIVIPAKGSSFS 323
+ E++ +L+ISK K IF D + + + P+ R+ IV+ +
Sbjct: 69 YTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRI--------IVLDSAPDGV- 119
Query: 324 MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTN---AT 380
LR D+ + +L+SSGTTG PK + ++
Sbjct: 120 --LRIEDLLEPRLGAEDEFRPTPLIDGKDDTAA----LLYSSGTTGLPKGVMLSHKNIIA 173
Query: 381 PFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKF 440
D D+V G ASLL GA++ + + F K
Sbjct: 174 NLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSET-FLKL 232
Query: 441 VQDAKVTMLGVVPSI-VRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKP 499
++ KVT L +VP I V KS D YD SS+R S + + L R
Sbjct: 233 IEKYKVTSLFLVPPIAVALAKSPLV-DKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTT 291
Query: 500 VIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPI-PQNVPGMGELAL 558
+ + G TE G T + + + + I+ DG N GEL +
Sbjct: 292 IKQGYGMTET-GPATTLTPPGDEKPGSVGRLVPNVEAKIVDEDGGKSLGPNER--GELCV 348
Query: 559 -SPLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRADD 613
P I Y + + I GD+ G + R +
Sbjct: 349 KGPQIMKG------------YLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKE 396
Query: 614 TMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLN 673
+ G +V E+E + V + A IG+P G VV+ S T ++
Sbjct: 397 LIKYKGYQVPPAELEAVLLEHP-KVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVK 455
Query: 674 QLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 711
++ A K+L VV + +P++ + K++
Sbjct: 456 DY-VAKKVAKYKQLR-----GGVVFVDEIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-19
Identities = 91/370 (24%), Positives = 152/370 (41%), Gaps = 38/370 (10%)
Query: 361 ILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL-VYASL 419
+ F+SGTTG PK + T++ P +D+R D+ + GW G W ++A
Sbjct: 86 LYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLFAPW 145
Query: 420 LNGASIALYNGSPLGSGFA-KFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGS 478
L GA++ +Y+G + + ++ VT P+ R + + YD+S +R S
Sbjct: 146 LLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQD-LSSYDFSHLRHVVS 204
Query: 479 TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFS--TPAMGCKL 536
GE N E + A P+ + G TE G + + + S PA G ++
Sbjct: 205 AGEPLN-PEVIDWWRAATGLPIRDGYGQTETG---LLVANFPGMEVKPGSMGRPAPGYRV 260
Query: 537 FILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGM---PSRNGQILR-- 591
I+ ++G +P G++A+ F G P + +R
Sbjct: 261 AIIDDEGNELPPGEE--GDIAVRV-----------KPRPPGLFRGYLKDPEKTEATIRGD 307
Query: 592 --RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVP 647
GD + GY+ GRADD + G ++ E+E +A+ + V E A +G P
Sbjct: 308 WYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVE---SALIEHPAVAEAAVVGSP 364
Query: 648 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTAT 707
P G E + VV Y P + +L V+K+ P + + LP+T +
Sbjct: 365 DPVRG-EVVKAFVVLA-PGYQPSE--ELAKELQEHVKKRTAPYKYPREIEFVEELPKTVS 420
Query: 708 NKVMRRVLRK 717
K+ R LR
Sbjct: 421 GKIRRVELRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-19
Identities = 122/546 (22%), Positives = 188/546 (34%), Gaps = 110/546 (20%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSI---- 265
++T EL + +A L ALG+ G +A+ + N LA+ AG + I
Sbjct: 74 TLTYAELDEQSNALARGLLALGVRAGDGVAV---LARNHRGFVLALYAAGKVGARIILLN 130
Query: 266 ----ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSS 321
A E++AR + ++ D+ L +
Sbjct: 131 TGFSGPQLA--EVAAREGV---------KALVYDDEFTDLLSALPPDLGRLRAWGGNPD- 178
Query: 322 FSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATP 381
+ + + +P ++ +SGTTG PK P +P
Sbjct: 179 ---DDEPSGSTDETLDDLIAGSSTAPLPKPPKPGGI---VILTSGTTGTPKGAPRPEPSP 232
Query: 382 FKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN-GSPLGSGFA-- 438
A V + ++ A + + A LGS
Sbjct: 233 LAPLAGL--------LSRVPFRAGETTLLP-----APMFHATGWAHLTLAMALGSTVVLR 279
Query: 439 -KF--------VQDAKVTMLGVVPSIVRTWKST--NCIDGYDWSSIRCFGSTGEASNVDE 487
+F + K T L VVP ++ + YD SS++ +G A +
Sbjct: 280 RRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSP-- 337
Query: 488 YLWLMGRAL--YKPVIE--YCGGTEIGGGFITG--SLLQAQSLAAFSTPAMGCKLFILGN 541
L RAL + PV+ Y G TE+ I L +A P G + IL
Sbjct: 338 --ELATRALEAFGPVLYNLY-GSTEVAFATIATPEDLAEAPGTVG--RPPKGVTVKILDE 392
Query: 542 DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQI---LRRHGDVFE 598
+G +P+ V G IF + Y G R+ QI L GDV
Sbjct: 393 NGNEVPRGVVGR--------IFVGNGFPFEG-----YTDG---RDKQIIDGLLSSGDV-- 434
Query: 599 RTSGGYYRAH------GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652
GY+ GR DD + GG V E+E + +V+E A IGV + G
Sbjct: 435 ----GYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHP-DVVEAAVIGVDDEEFG 489
Query: 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSH-VVPLPSLPRTATNKVM 711
++L VV D + ++ V+ L +KV VV L LPR T KV+
Sbjct: 490 -QRLRAFVVKAPG--AALDEDAIK----DYVRDNLAR-YKVPRDVVFLDELPRNPTGKVL 541
Query: 712 RRVLRK 717
+R LR+
Sbjct: 542 KRELRE 547
|
Length = 549 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 5e-19
Identities = 89/378 (23%), Positives = 149/378 (39%), Gaps = 61/378 (16%)
Query: 360 NILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADI--VAWP----TNLGWMMGPW 413
IL++SGTTG PK + T+ A +A +D+ D+ +A P +++
Sbjct: 5 LILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLL--- 61
Query: 414 LVYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPS-IVRTWKSTNCIDGYDWS 471
+L G ++ L P ++ +VT +VP+ R + + YD S
Sbjct: 62 ---PALAAGGTVVLMPKFDP--EAVLDLIERHRVTHTFLVPTMFQRLLRLPD-FARYDLS 115
Query: 472 SIRCFGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFST- 529
S+R + ++ + PV + G TE G S L +
Sbjct: 116 SLRLIIYGAAPMPAELKRAMI--EWFGPVFVQGYGMTETGPTTTLLS--PEDWLRKLGSV 171
Query: 530 --PAMGCKLFILGNDGCPIPQNVPG-MGELAL-SPLIFGASSTLLNANHYDVYFSGMPSR 585
P G ++ I+ DG +P PG +GE+ + P + Y+ P
Sbjct: 172 GRPVPGVEVRIVDEDGRELP---PGEVGEIVVRGPAVM------------AGYW-NRPEA 215
Query: 586 NGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVL 639
+ LR GD+ GY R D + GG + E+E N + + V
Sbjct: 216 TAEALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVE---NVLLAHPAVA 272
Query: 640 ETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVP 698
+ A IGVP + G E + VVV + D +L + +++L +KV V
Sbjct: 273 DVAVIGVPDEEWG-EAVVAVVVLRPG--ATLDAEELI----AFCRERLAG-YKVPKSVEF 324
Query: 699 LPSLPRTATNKVMRRVLR 716
+ LPR A+ K+++R LR
Sbjct: 325 VDELPRNASGKILKRELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 8e-18
Identities = 89/381 (23%), Positives = 146/381 (38%), Gaps = 58/381 (15%)
Query: 361 ILFSSGTTGEPKAIPWT------NATPFKAAADAWCHMDIRKADIVAW-PTNLGWMMGPW 413
++++SGTTG PK + + + + R D V W P + W+ G
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFE----LAPRPGD-VFWTPADWAWIGG-- 145
Query: 414 LVYASLLNGASIALYNGSP-LGSGFAKFVQDAKVTML---GVV-----PSIVRTWKSTNC 464
LL+ ALY G P + +F + ++ GV P+ ++ +
Sbjct: 146 -----LLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGS 200
Query: 465 IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSL 524
+R S GE+ + W L V E+ G TE + L
Sbjct: 201 ERARYDLRLRAVASGGESLGEELLEWAR-DELGLTVNEFYGQTEANLVVGNCAALGPARP 259
Query: 525 AAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL---SPLIFGASSTLLNANHYDVYF-- 579
+ P G ++ ++ + G P+P +GE+A+ P++F Y+
Sbjct: 260 GSMGKPVPGHEVAVVDDAGRPVPPGE--VGEIAVKRPDPVMFLG------------YWNN 305
Query: 580 ---SGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 636
+ +L GD+ R + GY GRADD + G ++ EIE +
Sbjct: 306 PEATAAKFAGDWLLT--GDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPA 363
Query: 637 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHV 696
VLE A +GVP P+ G E + VV + P D +L V+ +L +
Sbjct: 364 -VLEAAVVGVPDPERG-EIVKAFVVLAE-GVEPSD--ELATELQELVKSRLAAHEYPREI 418
Query: 697 VPLPSLPRTATNKVMRRVLRK 717
+ LP T T K+ RR LR+
Sbjct: 419 EFVDELPMTTTGKIRRRELRR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 9e-18
Identities = 132/544 (24%), Positives = 223/544 (40%), Gaps = 61/544 (11%)
Query: 192 DDIVIRWCDEGDGGL-----PVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV 246
+D++ R EG GG + S++ EL A+V + AL LG+ + + + M V
Sbjct: 7 EDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGV 66
Query: 247 NSVVIYLAIVLAGYIVVSI-----ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPL 301
+ + +L + AG + V++ AD +A + L S+A+ +F ++ P+
Sbjct: 67 DFPIAFLGAIRAGIVPVALNTLLTADDYAYM-----LEDSRARVVFVSGELL------PV 115
Query: 302 YRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVE-AFTN 360
+ ++P G + + E + E A Q + AF
Sbjct: 116 IKAALGKSPHLEHRVVVG--------RPEAGEVQLAELLATESEQFKPAATQADDPAFW- 166
Query: 361 ILFSSGTTGEPKAIPWTNATPFKAAAD-AWCHMDIRKADIVAWPTNL--GWMMGPWLVYA 417
L+SSG+TG PK + T++ P+ A A + IR+ D+V L + +G L +
Sbjct: 167 -LYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTF- 224
Query: 418 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 477
+ GA+ L P ++ + T+ VP++ + + D +R
Sbjct: 225 PMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCT 284
Query: 478 STGEASNVDEYLWLMGRALYK-PVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKL 536
S GEA + + +A + +++ G TE+ F++ +L P G +L
Sbjct: 285 SAGEA--LPAEVGQRWQARFGVDIVDGIGSTEMLHIFLS-NLPGDVRYGTSGKPVPGYRL 341
Query: 537 FILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYD---VYFSGMPSRNGQILRRH 593
++G+ G + PG EL LI G SS + N+ F G +R+G
Sbjct: 342 RLVGDGGQDVAAGEPG--EL----LISGPSSATMYWNNRAKTRDTFQGEWTRSG------ 389
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653
D + R G Y GR DD + + GI VS EIE VLE A +GV DG
Sbjct: 390 -DKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQ-HPAVLEAAVVGVEDEDGLI 447
Query: 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 713
+ +V+ L V+ +L P +V + LP+TAT K+ R
Sbjct: 448 KPKAFIVL--RPGQDIDTA--LETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRF 503
Query: 714 VLRK 717
LR+
Sbjct: 504 KLRE 507
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 1e-17
Identities = 125/549 (22%), Positives = 199/549 (36%), Gaps = 144/549 (26%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSI 265
+ +T EL A L LG+ KG +A+ +P N + Y I+ AG +VV +
Sbjct: 23 RKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLP---NCPQFPIAYFGILKAGAVVVPV 79
Query: 266 ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMK 325
+ E+ +L S AK +
Sbjct: 80 NPLYTPRELEHQLNDSGAKVLIV------------------------------------- 102
Query: 326 LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT------NA 379
IS+ D L L + + A + ++ GTTG PK T N
Sbjct: 103 ----AISFEDALASGAPLPLPVELSPDDL--AV--LQYTGGTTGVPKGAMLTHRNLVANV 154
Query: 380 TPFKAAADAWCHMDIRKAD--IVAWPTNL----GWMMGPWLVYASLLNGASIALY-NGSP 432
AW D + A P L G + + L GA+ L N P
Sbjct: 155 Q----QIAAWVKDLREGEDRFLTALP--LFHIFGLTVN---MLLGLRLGATNVLVPNFRP 205
Query: 433 LGSGFAKFVQDAKVTMLGVVPS----IVRTWKSTNCIDGYDWSSIRCFGSTGEASNV--- 485
+ K ++ + T+ VP+ ++ + YD+SS+R S G V
Sbjct: 206 I--NVLKEIKRYRFTIFPGVPTLYNALLNHPEFKK----YDFSSLRLCISGGAPLPVEVA 259
Query: 486 DEYLWLMGRALYKPVIEYCGGTE---------IGGGFITGSLLQAQSLAAFSTPAMGCKL 536
+ + G P++E G TE + G GS+ P G ++
Sbjct: 260 ERFEEKTG----APLVEGYGLTETSPVTTVNPLDGERKPGSI---------GLPLPGTEV 306
Query: 537 FILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG---MPSRNGQILR-- 591
I+ ++G +P GEL ++ G V G P ++L
Sbjct: 307 KIVDDEGNELPPGEV--GEL----VVRGP----------QV-MKGYWNRPEETAEVLTDG 349
Query: 592 --RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 649
R GD+ GY+ R D + +GG V EIE + + + VLE A +GVP P
Sbjct: 350 WLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPA-VLEAAVVGVPDP 408
Query: 650 DGGPEQLTIVVVFKD-SNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTAT 707
G E + VV K+ ++ T +L ++F +++L +KV V LP++A
Sbjct: 409 YRG-EAVKAFVVLKEGASLTEEEL----IAF---CRERLAA-YKVPRQVEFRDELPKSAV 459
Query: 708 NKVMRRVLR 716
K++RR LR
Sbjct: 460 GKILRRELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 9e-16
Identities = 123/525 (23%), Positives = 207/525 (39%), Gaps = 92/525 (17%)
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
A GL +G +A+ +P ++ +A + G + + + +I RL+ SKAK I T
Sbjct: 61 ACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQASKAKCIVT 120
Query: 289 QDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKL------RDGDISWLDFLERVRK 342
D AP I ++ S KL RDG WL+F E +++
Sbjct: 121 ----------------SDELAPAVDSIASECPSLKTKLLVSEHSRDG---WLNFKELLKE 161
Query: 343 LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT---PFKAAADAWCHMDIRKADI 399
E V+ + I F+SGTTG PK ++++ K W +D+ +DI
Sbjct: 162 AST-EHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYW--LDLTPSDI 218
Query: 400 VAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKV----------TM 448
+ ++ GW+ W +++ + GA + +++ +F D KV T
Sbjct: 219 MWNMSDTGWIKAAIWSLFSPWIQGACVFVHH-------LPRF--DPKVILQTLSKYPITT 269
Query: 449 LGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVD---EYLWLMGRALYKPVIEYCG 505
P++ R + + Y + S+R + GE N + ++ G LY E G
Sbjct: 270 FCSAPTVYRMLVQQD-LTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTGLDLY----EGYG 324
Query: 506 GTEIG--GGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPL-- 561
TE G G ++ S+ S P + I+ ++G +P G + + P
Sbjct: 325 QTETGLICANFKGMKIKPGSMGKASPPY---DVQIIDDNGNVLPPGTEGDIGIRVKPTRP 381
Query: 562 --IFGASSTLLNANHYDVYFSGMPSRNGQILRRH----GDVFERTSGGYYRAHGRADDTM 615
+F + Y P + +R GD GY+ GRADD +
Sbjct: 382 FCLF---------SCY----VDNPEKTAATIRGDFYITGDRGIMDEDGYFWFVGRADDVI 428
Query: 616 NLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLN 673
N G ++ E+E +A+ + V+E+A + P P G E + VV + D
Sbjct: 429 NSSGYRIGPFEVE---SALIEHPAVVESAVVSSPDPIRG-EVVKAFVVLA-PQFLSHDPE 483
Query: 674 QLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 718
QL V+ P V + LP+T T K+ R LR +
Sbjct: 484 QLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 94/384 (24%), Positives = 145/384 (37%), Gaps = 72/384 (18%)
Query: 361 ILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNL----GWMMGPWLVY 416
IL +SGTTG PK +P T+ +A + + +D L G ++ +
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS---LL 63
Query: 417 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVR---TWKSTNCIDGYDWSSI 473
A+LL G S+ S F + +VT VP+I + N +
Sbjct: 64 ATLLAGGSVVCPPKFS-ASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPP--PRL 120
Query: 474 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP--- 530
R F + A L + + PV+E G TE + S P
Sbjct: 121 R-FIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTE-------------AAHQIASNPLPP 166
Query: 531 ----------AMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL--LNANHYDVY 578
G ++ IL +DG P+P GE+ + G + T LN
Sbjct: 167 LVRKPGSVGRPAGVEVAILDDDGRPLPPGQ--EGEIVIR----GPNVTAGYLNN------ 214
Query: 579 FSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAV 634
P N + R R GD+ GY GR + +N GG K+S E+E +
Sbjct: 215 ----PEANREAFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRH 270
Query: 635 DSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV- 693
V E GVP G E++ VV + + + +LR +K+L FKV
Sbjct: 271 P-AVAEAVVFGVPDELYG-EEVAAAVVLRAD--SKVTIEELR----DFARKRLAA-FKVP 321
Query: 694 SHVVPLPSLPRTATNKVMRRVLRK 717
++ + +LP+ AT K+ RR L +
Sbjct: 322 KKILFVDALPKGATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 6e-15
Identities = 86/379 (22%), Positives = 148/379 (39%), Gaps = 58/379 (15%)
Query: 361 ILFSSGTTGEPKAIPWT--NATPF-KAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 417
++++SG+TG+PK + T N F +A + IR D V ++ + + ++
Sbjct: 104 VIYTSGSTGKPKGVVITHRNICNFLRAEGAI---LGIRPGDRVLQFASIAFDVSILEIFT 160
Query: 418 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 477
+LL G ++ + A+F+ +VT+ + PS++ + S+R
Sbjct: 161 TLLAGGTLVIPPEELRLEDLAEFLNRLRVTVAHLTPSLLALLDPEDV------PSLRTLI 214
Query: 478 STGEA---SNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST---PA 531
GEA + VD W R L G TE +T + + + P
Sbjct: 215 LGGEACPQALVDR--WSKPRRLLN----TYGPTEAT---VTATASRL-TPGKPVNIGRPL 264
Query: 532 MGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY--------DVYFSGM 582
++L + +P G EL I G A Y + +
Sbjct: 265 PNYTCWVLDPDLEPLVPIGAVG--ELC----IGGP----GVARGYLNRPELTAEKFIPDP 314
Query: 583 PSRNGQILR--RHGDVFERTSGG--YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNV 638
N R R GD+ G + GR DD + + G ++ EIE + A+ V
Sbjct: 315 FWLNNPGGRIYRTGDLVRYLEDGSLEF--LGRKDDQVKIRGQRIELGEIEAVLRALPGVV 372
Query: 639 LETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVV 697
+ + + P G +QL + + P + + SA++++L P + V S V
Sbjct: 373 VAAVVLLLDDPGG--KQLVAFLAVDGAAGGEPADVDIALL-RSALRERL-PSYMVPSVYV 428
Query: 698 PLPSLPRTATNKVMRRVLR 716
PL LP TA+ KV R+ LR
Sbjct: 429 PLDELPLTASGKVDRKALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 8e-15
Identities = 99/386 (25%), Positives = 145/386 (37%), Gaps = 82/386 (21%)
Query: 361 ILFSSGTTGEPKAIP------WTNATPFKAAADAWCHMDIRKAD--IVAWPTN------L 406
I+++SGTTG PK + NA A +AW +D + A P +
Sbjct: 93 IIYTSGTTGRPKGVVLTHGNLAANAR---ALVEAW---RWTASDVLLHALPLHHVHGLFN 146
Query: 407 GWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSI----VRTWKST 462
L GAS+ A + ++T+ VP+I + +
Sbjct: 147 ALH-------CPLWAGASVEFLPRFDPQERDALRLLP-RITVFMGVPTIYTRLLEHY-EF 197
Query: 463 NCIDGYDWSSIRCFGSTGEASNVDEYL-W--LMGRALYKPVIEYCGGTEIGGGFITGSLL 519
+ ++R F S A V W G L +E G TE G + L
Sbjct: 198 DDAAAAAARNLRLFVSGSAALPVPVLERWEERTGHTL----LERYGMTETG--MALSNPL 251
Query: 520 QAQSLAAF-STPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIF---------GASST 568
+ P G ++ I+ DG P +GE+ + P +F A +
Sbjct: 252 DGERRPGTVGLPLPGVEVRIVDEDGGE-PLAAGEVGEIQVRGPNVFSEYWNKPEATAEAF 310
Query: 569 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA-DDTMNLGGIKVSSVEI 627
D +F + GDV GYYR GR DD + GG KVS++EI
Sbjct: 311 -----TEDGWF------------KTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEI 353
Query: 628 ERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKL 687
E V E A IGVP PD G E + VVV + L +LR + ++KL
Sbjct: 354 EEALLEHPG-VAEVAVIGVPDPDWG-EAVVAVVVPEAG--AALTLAELR----AWAREKL 405
Query: 688 NPLFKV-SHVVPLPSLPRTATNKVMR 712
P +K+ V+ + LPR A KV +
Sbjct: 406 AP-YKIPKRVIVVDELPRNAMGKVQK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 2e-14
Identities = 114/537 (21%), Positives = 192/537 (35%), Gaps = 105/537 (19%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
S+T EL +A L A G+ G +A+ + + VV LAI+ AG V + ++
Sbjct: 12 SLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAY 71
Query: 270 ASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDG 329
+ ++ L S A+ + T + L
Sbjct: 72 PAERLAFMLEDSGARVLLTDES-------------------------------LAPLARA 100
Query: 330 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNA--------TP 381
D L LE ++ A + ++++SG+TG PK + + T
Sbjct: 101 DQLPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTN 160
Query: 382 FKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSG--FAK 439
+ + + D + L + + ++ +LLNG + L + L A+
Sbjct: 161 Y---------IALDPDDRFLQLSPLSFDASTFEIWGALLNGGRLVLIDKETLLDPDRLAR 211
Query: 440 FVQDAKVTMLGVVPS----IVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495
+ + VT+L + + +V + +R G+ + + R
Sbjct: 212 LIAEQGVTVLWLTAALFNQLVDEDPEA-------LAGLRQLLVGGDVLSP----AHVRRV 260
Query: 496 LYKPVIEYCGGTEIGGGF-------------ITGSLLQAQSLAAFSTPAMGCKLFILGND 542
L C G + G+ IT A S+ P ++IL +
Sbjct: 261 L-----AACPGLRLINGYGPTENTTFSTCHVITRLDEAADSIP-IGRPIPNTTVYILDEE 314
Query: 543 GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV---YFSGMPSRNGQILRRHGDVFER 599
G P+P VP GEL + G L N ++ F P G+ L R GD+
Sbjct: 315 GQPVPIGVP--GELY----VGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARW 368
Query: 600 TSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIV 659
G GR D + + G ++ EIE+ V E AA+ V G ++L
Sbjct: 369 RPDGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPG-VRE-AAVLVREDAAGDKRLVAY 426
Query: 660 VVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVL 715
VV + D +LR + + ++L P + V + V L LP TA KV RR L
Sbjct: 427 VVARG----ALDAAELR----AHLAERL-PAYMVPAAFVVLDELPLTANGKVDRRAL 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 3e-14
Identities = 88/387 (22%), Positives = 138/387 (35%), Gaps = 74/387 (19%)
Query: 361 ILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLL 420
I+++SG+TGEPK + ++ A ++++ + D + + G + +
Sbjct: 7 IIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLTAFR 66
Query: 421 NGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 480
G ++ L + K + ++T VP+ + + D+ S+R + G
Sbjct: 67 VGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNAG 126
Query: 481 EASNVDEYLWLMGRALYKPVIEYC--GGTEIGGGFITGSLLQAQSLAAFST---PAM--- 532
A L L R + + G TE A ST P
Sbjct: 127 GALPAKTILQL--RRAFPDAKLFSMYGLTE----------------AFRSTYLPPEELDR 168
Query: 533 ----------GCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL--LNANHYDVYFS 580
+L+++ DG G EL + GA+ N
Sbjct: 169 RPDSIGKAIPNVELWVVDEDGNRCAPGEVG--EL----VHRGANVMKGYWND-------- 214
Query: 581 GMPSRNGQILRRH----------GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERI 630
P + LR GD+ GY GR DD + G +VS EIE +
Sbjct: 215 --PEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEV 272
Query: 631 CNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPL 690
A V E A IGVP P G + + VVV D D +L +K L P
Sbjct: 273 ICAHPL-VAEAAVIGVPDPLLG-QAIVAVVVSADGE--SLDEKELLK----HCRKHL-PN 323
Query: 691 FKV-SHVVPLPSLPRTATNKVMRRVLR 716
+ V + +V + SLP+ A KV R LR
Sbjct: 324 YMVPAEIVFVDSLPKNANGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 5e-13
Identities = 134/542 (24%), Positives = 210/542 (38%), Gaps = 83/542 (15%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ + EL A L ALG+ G +A+ M + A + G V +
Sbjct: 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWH 69
Query: 269 FASLEISARLRISKAKAIFTQ-DLIIRGDKSIPL-YRVIDAQAPLAIVIPAKGSSFSMKL 326
F EI+ L S A+ + DL+ ++P V+ P I + S +
Sbjct: 70 FKPEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTP 129
Query: 327 RDGDISWLDFLERVRKLKENEFAAVEQP-VEAFTNILFSSGTTGEPKAIPWTNATPFKAA 385
G I W +L + + P V +++++SGTTG PK + TP +AA
Sbjct: 130 PAGAIDWEGWLA--------QQEPYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAA 181
Query: 386 ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASI-ALYNGSPL-------GSGF 437
A +R P + GP +Y S N + A G L
Sbjct: 182 A----AEQMRALIYGLKPGIRALLTGP--LYHSAPNAYGLRAGRLGGVLVLQPRFDPEEL 235
Query: 438 AKFVQDAKVTMLGVVPSI-VRTWKSTNCI-DGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495
+ ++ ++T + +VP++ +R K + YD SS+R D + RA
Sbjct: 236 LQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPAD-----VKRA 290
Query: 496 L---YKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFSTP------AMGCKLFILGNDGCP 545
+ + PVI EY G TE +G++ A S A S P A G +L + DG P
Sbjct: 291 MIEWWGPVIYEYYGSTE------SGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRP 344
Query: 546 IPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG--G 603
+PQ G I+ A + D + P + +I R G + TSG G
Sbjct: 345 LPQGEIGE--------IYSRI-----AGNPDFTYHNKPEKRAEI-DRGGFI---TSGDVG 387
Query: 604 YYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 657
Y A G R D + GG+ + EIE + +AV V + A G+P + G E L
Sbjct: 388 YLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAV-PGVHDCAVFGIPDAEFG-EALM 445
Query: 658 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLR 716
VV + D +R + + +KV H+ + LPR + K+ +R LR
Sbjct: 446 AVV--EPQPGATLDEADIRAQLKARLAG-----YKVPKHIEIMAELPREDSGKIFKRRLR 498
Query: 717 KQ 718
Sbjct: 499 DP 500
|
Length = 509 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 6e-13
Identities = 91/368 (24%), Positives = 144/368 (39%), Gaps = 44/368 (11%)
Query: 361 ILFSSGTTGEPKAIPWTNATPFK----AAADAWC--HMDIRKADIVAWPTNLGWMMG-PW 413
I F+SGTTG PK F A DA+ + D+ L + G
Sbjct: 152 IGFTSGTTGLPKG-----TMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLGG 206
Query: 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 473
LV L GAS L K +Q+ + T+L P+ R + +D SS+
Sbjct: 207 LVLFPLRFGASAVLLE-QATPPLLLKAIQEHRATILFTAPTAYRAM--LIKVKAFDISSL 263
Query: 474 RCFGSTGE---ASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP 530
R S GE A ++ G +I+ G TE+ FI+ + A+ A P
Sbjct: 264 RKCVSAGETLPAKVWQDWYERTG----LKIIDGIGATEMLHIFISANEENAKP-GATGKP 318
Query: 531 AMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQIL 590
G + I+ + G +P+ G LA+ L+ Y R+G +
Sbjct: 319 VPGYEARIVDDQGNEVPRGEAGR--LAVRGPT---GCRYLDDERQQEYV-----RDGWNV 368
Query: 591 RRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVLETAAIGVPP 648
GD+F + GY+ R+DD + G +++ E+E A+ + +V E A IGV
Sbjct: 369 T--GDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVED---ALLTHPDVAECAVIGV-- 421
Query: 649 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATN 708
PD Q+ + +L R+ V+ + P + + +LP+T T
Sbjct: 422 PDEERGQIVCAHIVLRDGTKATELLAERL--QDFVKAVIAPYKYPREINFVDALPKTQTG 479
Query: 709 KVMRRVLR 716
K+ R LR
Sbjct: 480 KIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 3e-12
Identities = 89/384 (23%), Positives = 143/384 (37%), Gaps = 65/384 (16%)
Query: 361 ILFSSGTTGEPK--AIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 418
++++SG+TG PK + A + D V + + W ++
Sbjct: 98 VIYTSGSTGRPKGVMVEHRGLVNL--LAWLQERYGLTAGDRVLQFASFSFDASVWEIFPP 155
Query: 419 LLNGASIALYNGSPLGSG--FAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 476
LL+GA++ L L A+ +++ ++T+L +VPS++R + ++ S+R
Sbjct: 156 LLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL--LDALEPAALPSLRLV 213
Query: 477 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEI--GGG------FITGSLLQAQSLAAFS 528
GEA + L + E G + G +T + L S
Sbjct: 214 IVGGEA---------LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGS 264
Query: 529 ----TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL-------LNANHYDV 577
P ++++L D P+P VP GEL + GA L A +
Sbjct: 265 VPIGRPIANTRVYVLDEDLRPVPVGVP--GELYIG----GAGVARGYLNRPELTAERFVP 318
Query: 578 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSV-----EIERICN 632
G P G+ L R GD+ G GRADD +K+ EIE
Sbjct: 319 DPFGGP---GERLYRTGDLARWLPDGNLEFLGRADDQ-----VKIRGYRIELGEIEAALL 370
Query: 633 AVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFK 692
A V E + G +L VV D +LR + + ++L P +
Sbjct: 371 AHPG-VREAVVVAREDGAGEK-RLVAYVVPAAG--AELDAAELR----AFLAERL-PDYM 421
Query: 693 V-SHVVPLPSLPRTATNKVMRRVL 715
V S V L +LP T KV R+ L
Sbjct: 422 VPSAFVVLDALPLTPNGKVDRKAL 445
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 3e-12
Identities = 89/429 (20%), Positives = 150/429 (34%), Gaps = 53/429 (12%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
+T EL A +A L +LG+ G +AI ++ VV LA++ AG V + +
Sbjct: 252 QLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLY 311
Query: 270 ASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDG 329
+ ++ L S+ + TQ + D +P + DA + + P +
Sbjct: 312 PAERLAYILEDSRPTLLLTQAHLRVDDVGLPGLALDDALSEIPDTDPIPQAL-------- 363
Query: 330 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK--AIPWTNATPFKAAAD 387
+A I+++SG+TG+PK I A
Sbjct: 364 ------------------------LGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG 399
Query: 388 AWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSG--FAKFVQDAK 445
A +D D V +L + + ++ +LL GA + L + ++
Sbjct: 400 ARFGLDAD--DRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQG 457
Query: 446 VTMLGVVPSIVR--TWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEY 503
+T+L +VP ++R + +R S GEA + L+ A +
Sbjct: 458 ITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLN 517
Query: 504 CGGTEIGGGFITGSLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNVPGMGELALSPL 561
G + A+ + P +L+IL P+P VP GEL
Sbjct: 518 LYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVP--GEL----Y 571
Query: 562 IFGASSTLLNANHYDVYFSGMPSR-NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGI 620
I G L Y R L R GD+ + G GR D + + G
Sbjct: 572 IAGLGLALG----YLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGF 627
Query: 621 KVSSVEIER 629
++ EIE
Sbjct: 628 RIELGEIEA 636
|
Length = 642 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 7e-12
Identities = 92/384 (23%), Positives = 135/384 (35%), Gaps = 69/384 (17%)
Query: 360 NILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADI--VAWP------TNLGWMMG 411
I ++SGTTG PK T+ + + + D V P LG +
Sbjct: 6 LIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGVL-- 63
Query: 412 PWLVYASLLNGASIALYNGSPLGSGFAKF--------VQDAKVTMLGVVPSIVRTWKSTN 463
ASL GA++ L KF ++ ++T L VP++
Sbjct: 64 -----ASLTAGATLVL---------MEKFDPGAALRLIERERITALHGVPTMFIALLEHP 109
Query: 464 CIDGYDWSSIRCFGSTGEA---SNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ 520
D +D SS+R S G V A + Y G TE G S
Sbjct: 110 DFDKFDLSSLRTGISGGAPVPPELVRRIREEFPMA--EITTGY-GMTETSGVGTQTSGDD 166
Query: 521 AQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY 578
+ P G ++ I+ DG +P G E+ + G S Y
Sbjct: 167 PYEDRPGTVGRPLPGVEVKIVDPDGGEVPPGEVG--EICVR----GYSVMK-------GY 213
Query: 579 FSGMPSRNGQILRR----H-GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 633
+ P + + H GD+ GY R GR D + GG + EIE
Sbjct: 214 Y-NDPEATAEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLT 272
Query: 634 VDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV 693
+ V E A +GVP G E + VV K +L + + +L FKV
Sbjct: 273 HPA-VAEAAVVGVPDERLG-EVVAAFVVLKPG--ATLTEEELI----AFCRGRLAR-FKV 323
Query: 694 -SHVVPLPSLPRTATNKVMRRVLR 716
+V + LPRTA+ K+ + LR
Sbjct: 324 PRYVRFVDELPRTASGKIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-11
Identities = 103/535 (19%), Positives = 184/535 (34%), Gaps = 128/535 (23%)
Query: 234 KGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLII 293
+G I I +P +V + LA++LAG + V + + + + + + K + T +
Sbjct: 30 EGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVITSRAFL 89
Query: 294 RGDKSIPLYRVIDAQAPLAIV----IPAKGSSFSMKLRDGDISWL-------DFLERVRK 342
+ + L ++ + IV + AK + D ++L +
Sbjct: 90 ---EKLKLEGLVVLLEGVRIVYLEDLRAK-----ISKADKLKAFLAAKLPPALLRLFLAG 141
Query: 343 LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV-- 400
K ++ A ILF+SG+ G PK + ++ +D+ D++
Sbjct: 142 AKPDDPAV----------ILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLG 191
Query: 401 AWP-------TNLGWMMGPWLVYASLLNGASIALYNGSPL-GSGFAKFVQDAKVTMLGVV 452
A P T + LL G + Y +PL A+ ++D K T+L
Sbjct: 192 ALPLFHAFGLTVTLLLP--------LLTGLRVVYY-PNPLDAKKIAELIRDYKATILCGT 242
Query: 453 PS----IVRTWKSTNCIDGYDWSSIR-CFGSTGEASNVDEYLWLMGRALY-KPVIEYCGG 506
P+ R D+SS+R G A + E + + ++E G
Sbjct: 243 PTFLRGYARNAHP------EDFSSLRLVV--AG-AEKLPEATRELFEEKFGIRILEGYGA 293
Query: 507 TEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQ------NVPGMGELAL-- 558
TE + + +TP MG K G G P+P + EL +
Sbjct: 294 TE------------CSPVISVNTP-MGNK---PGTVGRPLPGIEVRIVSPETHEELPIGE 337
Query: 559 -------SPLIF---------GASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG 602
P + + +L YD G I + D
Sbjct: 338 GGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYD---------TGDIGKIDED------- 381
Query: 603 GYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVF 662
G+ GR +GG VS +E + + + AA+ VP G E+ IV++
Sbjct: 382 GFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVPDEKKG-EK--IVLLT 438
Query: 663 KDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
+ P +LN + + L L ++ + +P + K R L+K
Sbjct: 439 TTEDLDPEELNAI------LREAGLPNLAVPRKILHVDEIPLLGSGKTDYRGLKK 487
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 1e-11
Identities = 120/557 (21%), Positives = 209/557 (37%), Gaps = 75/557 (13%)
Query: 187 SKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV 246
+++ + I +R CD ++ +EL AEV +A L A + +GS + + ++
Sbjct: 24 ARQQPEAIALRRCDG------TSALRYRELVAEVGGLAADLRAQSVSRGSRVLV---ISD 74
Query: 247 NSVVIYLAIVLA----GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY 302
N YL+ VLA G I V + I +I+ A ++P
Sbjct: 75 NGPETYLS-VLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVP-- 131
Query: 303 RVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNIL 362
P+ V A + S D L N E P+ ++
Sbjct: 132 -EALHSIPVIAVDIAAVTRESEHSLDAA-----------SLAGNADQGSEDPLA----MI 175
Query: 363 FSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAW-----------PTNLGWMMG 411
F+SGTTGEPKA+ N T F DI + + + W P + G
Sbjct: 176 FTSGTTGEPKAVLLANRTFFAVP-------DILQKEGLNWVTWVVGETTYSPLPATHIGG 228
Query: 412 PWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWS 471
W + L++G G + + + V +VP+++ S
Sbjct: 229 LWWILTCLMHGGLCV--TGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVP 286
Query: 472 SIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFI-----TGSLLQAQSLAA 526
S+R G G + + ++ + + G +E G + GS+++ ++ A
Sbjct: 287 SLRLVGYGGSRAIAADVRFIEATGVR--TAQVYGLSETGCTALCLPTDDGSIVKIEA-GA 343
Query: 527 FSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRN 586
P G +++ DG PG G A FG AN + P R
Sbjct: 344 VGRPYPGVDVYLAATDGIG--PTAPGAGPSA----SFGTLWIKSPANMLGYW--NNPERT 395
Query: 587 GQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETA 642
++L GD+ ER G++ GR+ + + GG+ ++ E++RI V S V E A
Sbjct: 396 AEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGV-SGVREAA 454
Query: 643 AIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSL 702
+P + G L + V + L+ + + +++ P+ + S +V + +
Sbjct: 455 CYEIPDEEFG--ALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDI 512
Query: 703 PRTATNKVMRRVLRKQL 719
PRT + KVMR L
Sbjct: 513 PRTQSGKVMRASLAAAA 529
|
Length = 540 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 131/567 (23%), Positives = 201/567 (35%), Gaps = 140/567 (24%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ +T EL A +A+ L ALGL +G +AI + N +Y A +G I
Sbjct: 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWH 69
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
+ EI+ + S AK + + D A LA +PA +
Sbjct: 70 LTAAEIAYIVDDSGAKVLIVS------------AALADTAAELAAELPAGVPLLLVV--A 115
Query: 329 GDIS-WLDFLERVRKLKENEFAAVEQPVEAFTN------ILFSSGTTGEPKAIPWTNATP 381
G + + + E AA QP + +L+SSGTTG PK I
Sbjct: 116 GPVPGFRSY--------EEALAA--QPDTPIADETAGADMLYSSGTTGRPKGI------- 158
Query: 382 FKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIAL-----YNGSPLGSG 436
K D P + ++G + S+ L Y+ +PL
Sbjct: 159 -KRPLPG--------LDPDEAPGMMLALLGFGM----YGGPDSVYLSPAPLYHTAPL--R 203
Query: 437 FAKFVQ------------DA----------KVTMLGVVPSI-VRTWKSTNCI-DGYDWSS 472
F DA +VT +VP++ VR K + YD SS
Sbjct: 204 FGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSS 263
Query: 473 IRCFGSTGEASNVDEYLWLMGRAL---YKPVI-EYCGGTEIGGG-FITGSLLQAQSLAAF 527
+R V+ + RA+ + P+I EY +E GG IT LA
Sbjct: 264 LRVAIHAAAPCPVE-----VKRAMIDWWGPIIHEYYASSEGGGVTVITS----EDWLAHP 314
Query: 528 ST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP-- 583
+ A+ ++ IL DG +P G ++ H D P
Sbjct: 315 GSVGKAVLGEVRILDEDGNELPPGEIG--------TVYFEMDGYPFEYHND------PEK 360
Query: 584 ---SRNGQILRRHGDVFERTSGGYYRAHG------RADDTMNLGGIKVSSVEIERICNAV 634
+RN GDV GY G R D + GG+ + EIE N +
Sbjct: 361 TAAARNPHGWVTVGDV------GYLDEDGYLYLTDRKSDMIISGGVNIYPQEIE---NLL 411
Query: 635 DSN--VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFK 692
++ V + A GVP + G E++ VV D L +++ ++ +L +K
Sbjct: 412 VTHPKVADVAVFGVPDEEMG-ERVKAVVQPADGADAGDALAAELIAW---LRGRLAH-YK 466
Query: 693 VSHVVPL-PSLPRTATNKVMRRVLRKQ 718
+ LPRT T K+ +R LR +
Sbjct: 467 CPRSIDFEDELPRTPTGKLYKRRLRDR 493
|
Length = 502 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 125/528 (23%), Positives = 188/528 (35%), Gaps = 81/528 (15%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYI---VVSIA 266
++T +EL +A AL AL + + + I M N A++ A I ++ +
Sbjct: 68 TLTWRELDERSDALAAALQALPIGEPRVVGI---MCRNHRGFVEALLAANRIGADILLLN 124
Query: 267 DSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKL 326
SFA ++ + D +I ++ A P A I
Sbjct: 125 TSFAGPALAEVVTREGV------DTVIYDEEFSATVDRALADCPQATRI----------- 167
Query: 327 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTN---ILFSSGTTGEPKAIPWT---NAT 380
++W D + A ++P IL +SGTTG PK +
Sbjct: 168 ----VAWTDEDHDLTVEVLIAAHAGQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIG 223
Query: 381 PFKAAAD--AWCHMDIRKADIVAWPTNLGWMMGPW----LVYASLLNGASIALYNGSPLG 434
KA D W + ++ P M W LV A+ L + P
Sbjct: 224 TLKAILDRTPWRA---EEPTVIVAP-----MFHAWGFSQLVLAASLACTIVTRRRFDPEA 275
Query: 435 SGFAKFVQDAKVTMLGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 492
+ + + T L VVP + + Y S+R ++G D + M
Sbjct: 276 T--LDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFM 333
Query: 493 GRALYKPVI--EYCGGTEIGGGFI-TGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQN 549
+ + VI Y TE G T + L+A A PA G ++ IL D +P
Sbjct: 334 DQ--FGDVIYNNY-NATEAGMIATATPADLRAAPDTA-GRPAEGTEIRILDQDFREVPT- 388
Query: 550 VPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHG 609
GE+ IF + T +D Y SG GDV G G
Sbjct: 389 ----GEVGT---IFVRNDTQ-----FDGYTSGSTKDFHDGFMASGDVGYLDENGRLFVVG 436
Query: 610 RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP 669
R D+ + GG V +E+E+ V E A IGV G VV+ ++ TP
Sbjct: 437 RDDEMIVSGGENVYPIEVEKTLATHPD-VAEAAVIGVDDEQYGQRLAAFVVLKPGASATP 495
Query: 670 PDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLR 716
L Q V+ L +KV +V L LPR AT K++RR L+
Sbjct: 496 ETLKQ-------HVRDNLAN-YKVPRDIVVLDELPRGATGKILRRELQ 535
|
Length = 537 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 5e-11
Identities = 122/545 (22%), Positives = 207/545 (37%), Gaps = 70/545 (12%)
Query: 203 DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262
G + T +EL A V VA L LG+ +G ++ +P V+YLA G ++
Sbjct: 48 LGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVL 107
Query: 263 VSIADSFASLEISARLRISKAKAIFTQDLII----RG-DKSIPLYRVIDAQAPLAIVIPA 317
+ F E+S L+ +++K L++ RG D + R+ L V+
Sbjct: 108 NPLMPIFRERELSFMLKHAESKV-----LVVPKTFRGFDHAAMARRLRPELPALRHVVVV 162
Query: 318 KGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPV----EAFTNILFSSGTTGEPKA 373
G DG S+ L +E + A+ + + T ++++SGTTGEPK
Sbjct: 163 GG--------DGADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKG 214
Query: 374 IPWTNATPFKAAADAWCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYN 429
+ T T + + D++ + + G+M G + ++ GA+ A+
Sbjct: 215 VMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMM---PVMLGAT-AVLQ 270
Query: 430 GSPLGSGFAKFVQDAKVT-MLGVVP---SIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV 485
+ A+ ++ VT + P + R K G SS+R F G A
Sbjct: 271 DIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE----SGRPVSSLRTFLCAG-APIP 325
Query: 486 DEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST---PAMGCKLFILGND 542
+ AL ++ G TE G +T + L A +T P G ++ ++ D
Sbjct: 326 GALVERARAALGAKIVSAWGMTE--NGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDAD 383
Query: 543 GCPIPQNVPGMGELALSPLIFG--ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERT 600
G P+P G FG LN D +F GD+
Sbjct: 384 GAPLPAGQIGR-LQVRGCSNFGGYLKRPQLNGTDADGWFDT------------GDLARID 430
Query: 601 SGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQLTI 658
+ GY R GR+ D + GG + VEIE + + + + A + P G
Sbjct: 431 ADGYIRISGRSKDVIIRGGENIPVVEIE---ALLYRHPAIAQVAIVAYPDERLGERACAF 487
Query: 659 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 718
VV + ++ + + A Q + +V +LPRT + K+ + LR+
Sbjct: 488 VVPRPGQSLDFEEMVEFLKAQKVAKQ------YIPERLVVRDALPRTPSGKIQKFRLREM 541
Query: 719 LAQLD 723
L D
Sbjct: 542 LRGED 546
|
Length = 547 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 6e-11
Identities = 88/385 (22%), Positives = 144/385 (37%), Gaps = 41/385 (10%)
Query: 361 ILFSSGTTGEPK--AIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 418
++++SG+TG+PK AI + + D + + + +G ++ +
Sbjct: 661 VIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAAD--DSMLMVSTFAFDLGVTELFGA 718
Query: 419 LLNGASIAL--YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 476
L +GA++ L + + FA + D VT+L +VPS ++ + + R
Sbjct: 719 LASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALP--RPQRAL 776
Query: 477 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTE--IGGGFITGSLLQAQSLAAF-STPAMG 533
GEA VD + +I + G TE +G S + P
Sbjct: 777 VCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQPLAN 836
Query: 534 CKLFILGNDGCPIPQNVPGMGELALSPLIFGAS-------STLLNANHYDVYFSGMP-SR 585
L+IL + P+P V +GEL I GA L A F P
Sbjct: 837 LGLYILDHYLNPVP--VGVVGEL----YIGGAGLARGYHRRPALTAE----RFVPDPFGA 886
Query: 586 NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIG 645
+G L R GD+ + G GR D + + G ++ EIE A V E +
Sbjct: 887 DGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPG-VREAVVLA 945
Query: 646 VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN---PLFKV-SHVVPLPS 701
P G QL +V + ++ +L P + V +H++ L S
Sbjct: 946 QPGDAG--LQLVAYLV-----PAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDS 998
Query: 702 LPRTATNKVMRRVLRKQLAQLDQNS 726
LP T K+ R+ L K A Q +
Sbjct: 999 LPLTPNGKLDRKALPKPDASAVQAT 1023
|
Length = 3956 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 8e-11
Identities = 123/534 (23%), Positives = 195/534 (36%), Gaps = 59/534 (11%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
K +T +V A L LG++KG +AI +P +V+ Y +LAG IVV
Sbjct: 48 KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPL 107
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIP---------LYRVID-AQAPLAIVIP-- 316
+ E+ +L S AK I DL+ ++ + R+ D P ++ P
Sbjct: 108 YTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167
Query: 317 -AKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIP 375
K S+ +K+ + + + V K P + ++ GTTG PK +
Sbjct: 168 QKKQSNLVVKVSESET--IHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVM 225
Query: 376 WT--NATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY-ASLLNGASIALYNGSP 432
T N W + ++V + G V S++ G + L
Sbjct: 226 LTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFD 285
Query: 433 LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR-CF-GSTGEASNVDEYLW 490
+ F + ++ KVT+ P+I ++ + YD SSIR C GS V E
Sbjct: 286 MKMVF-EAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKF- 343
Query: 491 LMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNV 550
T GG + G L S S + + G+ G P P
Sbjct: 344 ---------------ETVTGGKLVEGYGLTESSPVTHSNFLWEKR--VPGSIGVPWPDTE 386
Query: 551 PGMGEL----ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSG 602
+ L AL P G ++ + P +L+ GDV
Sbjct: 387 AMIMSLETGEALPPGEIG--EIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDED 444
Query: 603 GYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVF 662
G++ R D + G V E+E + + V E IGVP P G VV+
Sbjct: 445 GFFYVKDRKKDMIVASGFNVYPREVEEVLYEHE-KVQEVVTIGVPDPYRGETVKAFVVLK 503
Query: 663 KDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPS-LPRTATNKVMRRVL 715
+ + + +LNQ + +A +KV V LP+T K++RRVL
Sbjct: 504 EGTECSEEELNQFARKYLAA--------YKVPKVYEFRDELPKTTVGKILRRVL 549
|
Length = 563 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 8e-11
Identities = 70/283 (24%), Positives = 115/283 (40%), Gaps = 40/283 (14%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+++T EL V +A L A G KG + + P ++ V++LA++ AG VV+ A+
Sbjct: 31 RALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAG-AVVTTANP 89
Query: 269 FASL-EISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVI---PAKGSSFSM 324
+ EI+ +++ S AK T L + + A +V+ GS+
Sbjct: 90 LYTPAEIAKQVKDSGAKLAITTS---------ELAEKLASLALEPVVLLDSADDGSAAID 140
Query: 325 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT------N 378
L D V +K+++ AA + +SSGTTG K + T N
Sbjct: 141 DLLFADEP---EPPVVV-IKQDDVAA----------LPYSSGTTGRSKGVMLTHRNLIAN 186
Query: 379 ATPFKAAADAWCHMDIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPLGSGF 437
A + + P + + G ++ A L GA++ + L F
Sbjct: 187 VAQLVAGEGPNFDREDVT--LCVLP--MFHIYGLTVILLALLRLGATVVVMPRFDLEK-F 241
Query: 438 AKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 480
++ KVT L VVP IV +D YD SS++ GS
Sbjct: 242 LAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGA 284
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 1e-10
Identities = 102/540 (18%), Positives = 181/540 (33%), Gaps = 57/540 (10%)
Query: 189 RSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS 248
R ++ V R D + ++ EL +A+ L G+ + + + ++
Sbjct: 3061 RLFEEQVERTPDAVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEM 3120
Query: 249 VVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQ 308
VV LAI+ AG V + + ++ L S A+ + +Q
Sbjct: 3121 VVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQS------------------ 3162
Query: 309 APLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTT 368
++L + L+R + A+ E ++++SG+T
Sbjct: 3163 --------------HLRLPLAQGVQVLDLDRGDENYAEANPAIRTMPENLAYVIYTSGST 3208
Query: 369 GEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY 428
G+PK + ++ + D V T + + ++ L++GA + L
Sbjct: 3209 GKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVL- 3267
Query: 429 NGSPLGSGFAKFVQDAKVTMLGVVPSIVRTW-KSTNCIDGYDWSSIRCFGSTGEASNVDE 487
G A V+ + V+ + D + +S++ GEA D
Sbjct: 3268 AGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPAD- 3326
Query: 488 YLWLMGRALYK-PVIEYCGGTEIGGGFITGSLLQAQSLAAF-STPAMGCKLFILGNDGCP 545
L + P+ G TE ++ A P +IL P
Sbjct: 3327 ---LQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEP 3383
Query: 546 IPQNVPGMGELALSPLIFG-ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGY 604
+P G L L G + L A F P G+ L R GD+ + G
Sbjct: 3384 VPVGALGELYLGGEGLARGYHNRPGLTAER----FVPDPFVPGERLYRTGDLARYRADGV 3439
Query: 605 YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 664
GR D + + G ++ EIE V E + V QL VV +D
Sbjct: 3440 IEYIGRVDHQVKIRGFRIELGEIEA-RLLEHPWVREAVVLAV-----DGRQLVAYVVPED 3493
Query: 665 SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724
LR + + ++ L +H++ L +P T K+ R+ L + A L Q
Sbjct: 3494 EA------GDLREALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKALPRPDAALLQ 3547
|
Length = 5163 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 91/391 (23%), Positives = 156/391 (39%), Gaps = 63/391 (16%)
Query: 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD--AWCHMDIRKADIVAWP-------- 403
P E + ILF+SGT+G+PK + + + A + +D + + P
Sbjct: 133 PPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLI 192
Query: 404 TNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFV-QDAKVTMLGVVPSIVRTWKST 462
T+ V L G SI + NG + +T VP + + +++
Sbjct: 193 TS---------VRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQ 243
Query: 463 NCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGF---ITGSLL 519
D + + G ++ L + + P+++ G +E G F + ++
Sbjct: 244 PGFDAAALRHLTALFTGGAPHAAEDILGWLDDGI--PMVDGFGMSEAGTVFGMSVDCDVI 301
Query: 520 QAQSLAA-FSTPAMGCKLFILGNDGCPIPQNVPGMGELALS-PLIF-------GASSTLL 570
+A++ AA TP + + ++ + G P VPG EL L P + A++
Sbjct: 302 RAKAGAAGIPTPTVQTR--VVDDQGNDCPAGVPG--ELLLRGPNLSPGYWRRPQATARAF 357
Query: 571 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERI 630
D +F R G I RR D G++ R D GG V EIE +
Sbjct: 358 TG---DGWF-----RTGDIARRDAD-------GFFWVVDRKKDMFISGGENVYPAEIEAV 402
Query: 631 CNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPL 690
A + E A +G+ G E + +V D P DL ++R ++ + K
Sbjct: 403 L-ADHPGIRECAVVGMADAQWG-EVGYLAIVPADG--APLDLERIRSHLSTRLAK----- 453
Query: 691 FKV-SHVVPLPSLPRTATNKVMRRVLRKQLA 720
+KV H+ + +LPRTA+ K+ + LR LA
Sbjct: 454 YKVPKHLRLVDALPRTASGKLQKARLRDALA 484
|
Length = 488 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 120/544 (22%), Positives = 198/544 (36%), Gaps = 88/544 (16%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
S T L +A L A G++ G +A +P +IYLA + G + V + S+
Sbjct: 49 SYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSW 108
Query: 270 ASLEISARLRISKAKAIFT---------QDLIIRGDKSIP-LYRV--IDAQAPLAIVIPA 317
E+ L +AK F DLI+ +P L ++ +D AP
Sbjct: 109 REAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAP------- 161
Query: 318 KGSSFSMKLRDGDISWLDFLERVRKLKE------NEFAAVEQPVEAFTNILFSSGTTGEP 371
SS S+ + L +E AA +LF+SGT G P
Sbjct: 162 ATSSLSLS---------QIIADYEPLTTAITTHGDELAA----------VLFTSGTEGLP 202
Query: 372 KAIPWTNATPFKAAADAWC-HMDIRKADIVAWPTNLGWMMGPW--LVYASLLNGASIALY 428
K + T+ A+ A+C +++ D+ P LG G + L+ S+ L
Sbjct: 203 KGVMLTHNNIL-ASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD 261
Query: 429 NGSPLGSGFAKFVQDAKVT-MLGVVPSIVRTWKSTNCI--DGYDWSSIRCF--GSTGEAS 483
+P ++ + T MLG P I + N + D S++R F G T
Sbjct: 262 IFTP--DACLALLEQQRCTCMLGATPFI---YDLLNLLEKQPADLSALRFFLCGGTTIPK 316
Query: 484 NVDEYLWLMGRALYKPVIEYCGGTE-IGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND 542
V G L + G TE + ++ + A G ++ ++
Sbjct: 317 KVARECQQRGIKL----LSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEA 372
Query: 543 GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG-----DVF 597
+P G E + P +F + + P + L G D+
Sbjct: 373 RKTLPPGCEGE-EASRGPNVF-------------MGYLDEPELTARALDEEGWYYSGDLC 418
Query: 598 ERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 657
GY + GR D + GG +SS E+E I + + + +P G E+
Sbjct: 419 RMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQH-PKIHDACVVAMPDERLG-ERSC 476
Query: 658 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717
VV K +++ + V K P H+V + LPRTA+ K+ + +LRK
Sbjct: 477 AYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYP----EHIVVIDKLPRTASGKIQKFLLRK 532
Query: 718 QLAQ 721
+ +
Sbjct: 533 DIMR 536
|
Length = 547 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 5e-10
Identities = 133/564 (23%), Positives = 214/564 (37%), Gaps = 75/564 (13%)
Query: 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGS 236
N A + + + D + + WCD D G K T +L+ A ALG+ KG
Sbjct: 17 NFAYDVVDAYADEEPDKLALIWCD--DDGEE-KIFTFGDLKDYSNKAANFFKALGIGKGD 73
Query: 237 AIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGD 296
+ + + LA+ G I + + +I R+ + K I + G+
Sbjct: 74 TVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMI-----VCIGE 128
Query: 297 KSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPV- 355
+P ID AP P + +G W+DF K EN E+P
Sbjct: 129 DGVP--EHIDEAAP-ECGSPTLLVLVGDPVPEG---WIDF----DKEIENASPDFERPTG 178
Query: 356 -EAFTN-----ILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWM 409
+A N + F+SGTTG PK + + P A ++++ + + GW
Sbjct: 179 NDATCNDDILLVYFTSGTTGMPKMVEHDHTYPLGHIVTAKYWQNVKEGGLHLTVADTGWG 238
Query: 410 MGPW-LVYASLLNGASIALYNGSPLGSGFAKFVQDA--------KVTMLGVVPSIVRTWK 460
W +Y + GA++ +Y+ + KF VT P+I R
Sbjct: 239 KAVWGKLYGQWIAGAAVFVYD-------YDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLI 291
Query: 461 STNCIDGYDWSSIRCFGSTGEASN---VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGS 517
+ + YD SS+R + GE N + + G L E G TE T
Sbjct: 292 KED-LSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGIKLM----EGFGQTETTLTIATFP 346
Query: 518 LLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 577
++ + + P+ G + I+ DG V GE+ + G L + D
Sbjct: 347 WMEPKP-GSMGKPSPGYDIDIIDPDGKSCE--VGEEGEIVIR-TSDGKPLGLFMGYYRD- 401
Query: 578 YFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 633
P R ++ GD GY GRADD + G ++ E+E +A
Sbjct: 402 -----PERTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVE---SA 453
Query: 634 VDSN--VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 691
+ + VLE A GVP P G +V+ K Y P + +L+ V KK+ +
Sbjct: 454 LIQHPAVLECAVTGVPDPIRGQVVKATIVLTKG--YEPSE--ELKKELQDHV-KKVTAPY 508
Query: 692 KVSHVVP-LPSLPRTATNKVMRRV 714
K ++ + LP+T + K+ RRV
Sbjct: 509 KYPRIIEFVDELPKTISGKI-RRV 531
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 114/524 (21%), Positives = 184/524 (35%), Gaps = 116/524 (22%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
S+T EL +A L A G+ S + + + + + VV LA++ AG V + ++
Sbjct: 24 SLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAYVPLDPAY 83
Query: 270 ASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDG 329
RL I+ DA A L + P
Sbjct: 84 PP----ERLA-----------YILE-----------DAGARLVLTDPD------------ 105
Query: 330 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK--AIPWTNATPFKAAAD 387
D+++ ++++SG+TG PK AI NA A
Sbjct: 106 DLAY---------------------------VIYTSGSTGRPKGVAIEHRNAAALLQWAA 138
Query: 388 AWCHMDIRKADIVAWPTNLGW----MMGPWLVYASLLNGASIALYNGSP-LGSGFAKFVQ 442
A + + A + P G + L + + L AK
Sbjct: 139 AVFSAEELAGVLAATSICFDLSVFEIFVPLST------GGRVVLADNALALPDLPAK--- 189
Query: 443 DAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIE 502
A+VT++ VPS R + + SS+R GE + L + V
Sbjct: 190 -AEVTLINTVPSAARELLRHDALP----SSVRTVNLAGEPLPQELVQRLYALPQVERVYN 244
Query: 503 YCGGTEIGGGFITGSLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNVPGMGELALSP 560
G +E + T + ++ + S P G + ++L P+P VPG EL +
Sbjct: 245 LYGPSE-DTTYSTYAEVEPGASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPG--ELYIG- 300
Query: 561 LIFGASSTL-------LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADD 613
GA L A + + G+ L R GD+ R + G GR DD
Sbjct: 301 ---GAGVARGYLGRPELTAERF--LPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDD 355
Query: 614 TMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE-QLTIVVVFKDSNYTPPDL 672
+ + G ++ EIE ++ V E A+ V D + QL +V D+
Sbjct: 356 QVKVRGFRIELGEIEAALRSIPG-VAE--AVVVAIGDAAGDRQLVAYIVADPG--AAIDI 410
Query: 673 NQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVL 715
LR + + +L P + V S V L +LP T K+ R+ L
Sbjct: 411 EDLR----ARLATRL-PAYMVPSRFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 2e-09
Identities = 122/546 (22%), Positives = 191/546 (34%), Gaps = 91/546 (16%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+T EL +A+AL A G+ + I M + +V LA++ AG V + +
Sbjct: 4577 LTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYP 4636
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGD 330
++ + S A + TQ + + P IP +S ++ RD D
Sbjct: 4637 RERLAYMMEDSGAALLLTQ-------------SHLLQRLP----IPDGLASLALD-RDED 4678
Query: 331 ISWLDFLER--VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKA-----------IPWT 377
W F +L + A V +++SG+TG PK + T
Sbjct: 4679 --WEGFPAHDPAVRLHPDNLAYV----------IYTSGSTGRPKGVAVSHGSLVNHLHAT 4726
Query: 378 NATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN-GSPLGSG 436
D D G L+NGAS+ + +
Sbjct: 4727 GERYELTPDDRVLQFMSFSFDGSHE----GLYHP-------LINGASVVIRDDSLWDPER 4775
Query: 437 FAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR--CFGSTGEASNVDEYLWLMGR 494
+ + +VT+L P ++ DG + S+R CFG GEA Y
Sbjct: 4776 LYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPSLRVYCFG--GEAVAQASYDLAWRA 4832
Query: 495 ALYKPVIEYCGGTEIGGGFITGSLLQAQ-------SLAAFSTPAMGCKLFILGNDGCPIP 547
+ G TE +T L +A+ + TP ++L P+P
Sbjct: 4833 LKPVYLFNGYGPTETT---VTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLP 4889
Query: 548 QNVPGMGELALSPLIFGA---SSTLLNANHYDVYFSGMPS---RNGQILRRHGDVFERTS 601
V GEL L L A + +P G L R GD+ +
Sbjct: 4890 --VGVAGELYLGGEGVARGYLERPALTAERF------VPDPFGAPGGRLYRTGDLARYRA 4941
Query: 602 GGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVV 661
G GR D + + G ++ EIE V E I G +QL VV
Sbjct: 4942 DGVIDYLGRVDHQVKIRGFRIELGEIE-ARLREHPAVREAVVIAQEGAVG--KQLVGYVV 4998
Query: 662 FKDSNYTPPDLNQ--LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQ 718
+D D Q LR +A++++L P + V +H+V L +P T K+ R+ L +
Sbjct: 4999 PQDPALADADEAQAELRDELKAALRERL-PEYMVPAHLVFLARMPLTPNGKLDRKALPQP 5057
Query: 719 LAQLDQ 724
A L Q
Sbjct: 5058 DASLLQ 5063
|
Length = 5163 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 4e-09
Identities = 120/519 (23%), Positives = 201/519 (38%), Gaps = 64/519 (12%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISK 282
+A L GL G +A+ M N VV LA A +VV + + E R + +
Sbjct: 56 LAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAG 115
Query: 283 AKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRK 342
A+ + D D++ P R + G + S+ L
Sbjct: 116 ARVVLI-DADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDA-------------A 161
Query: 343 LKENEFAAVEQ---PVEAFTNILFSSGTTGEPKAIPWTN---ATPFKAAADAWCHMDIRK 396
+ + + P +A I+F+ GTTG PK +PWT+ A+ +A + + R
Sbjct: 162 TEPTPATSTPEGLRPDDAM--IMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPRD 218
Query: 397 ADIVAWPTNLGWMMGPWLVYASLLNGASIAL-YNGSPLGSGFAKFVQDAKVTMLGVVPSI 455
A + P G + L+ A+L +G ++ L G F ++ T VP+I
Sbjct: 219 ATVAVMPLYHGHGLIAALL-ATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTI 277
Query: 456 VRTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTE----- 508
+ ++ G +++R F + A E + PV+ G TE
Sbjct: 278 HQILLERAATEPSGRKPAALR-FIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQV 336
Query: 509 ----IGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFG 564
I G T + + + L ST G ++ I+G+DG P+P G L + ++ G
Sbjct: 337 TTTQIEGIGQTENPVVSTGLVGRST---GAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRG 393
Query: 565 --ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 622
T+ AN D + R GD+ ++ G GR + +N GG K+
Sbjct: 394 YLGDPTITAANFTDGWL------------RTGDLGSLSAAGDLSIRGRIKELINRGGEKI 441
Query: 623 SSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNY-TPPDLNQLRMSFNS 681
S +E + + NV+E A GVP G E + V+V ++S T +L Q
Sbjct: 442 SPERVEGVLASHP-NVMEAAVFGVPDQLYG-EAVAAVIVPRESAPPTAEELVQF------ 493
Query: 682 AVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 720
+++L + LP TA + RR + +Q
Sbjct: 494 -CRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFG 531
|
Length = 534 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 4e-09
Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 10/171 (5%)
Query: 207 PVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIA 266
+++T +EL V +A L +LG+ G +AI + LAI+ G + V I
Sbjct: 42 GWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIY 101
Query: 267 DSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKL 326
+ +++ L S++K IF ++ + D +P+ L ++I +
Sbjct: 102 STSTPEQLAYILNESESKVIFVENQEL-LDLVLPVLEDCPKVVDLIVII----DLVREAV 156
Query: 327 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTN-----ILFSSGTTGEPK 372
+ F + L + A +E + I+++SGTTG PK
Sbjct: 157 EAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPK 207
|
Length = 613 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 6e-09
Identities = 116/541 (21%), Positives = 209/541 (38%), Gaps = 74/541 (13%)
Query: 203 DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262
DG V+ + +EL V +A L LG+ +G ++ +P +YLA G ++
Sbjct: 46 DGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVL 105
Query: 263 VSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP-LAIVIPAKGSS 321
+ F E+S L + +K +F + RG + R + ++ P L V+ G
Sbjct: 106 NPLMPIFRERELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDG-- 162
Query: 322 FSMKLRDGDISWLDFLERVRKLKENEFAAVEQ----PVEAFTNILFSSGTTGEPKAIPWT 377
DGD S+ L + + AA+ + T ++++SGTTGEPK + T
Sbjct: 163 ------DGDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHT 216
Query: 378 NATPFKAAADAWCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYNGSPL 433
T F +++ D++ + + G+M G L+ +LN ++ +P
Sbjct: 217 ANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYG--LMMPLILNATAVLQDIWNPA 274
Query: 434 GSGFAKFVQDAKVTM-LGVVP---SIVRTWKSTNCIDGYDWSSIRCFGSTGE--ASNVDE 487
+ A+ +++ VT + P + R K + G S+ F G + E
Sbjct: 275 RA--AELIRETGVTFTMASTPFLTDLCRAVKES----GAPVPSLFTFLCAGAPIPGILVE 328
Query: 488 YLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST----PAMGCKLFILGNDG 543
W L ++ G TE G +T +L ST P G ++ ++ +G
Sbjct: 329 RAW---ELLGALIVSAWGMTENGAVTVT---EPDDALEKASTTDGRPLPGVEVKVIDANG 382
Query: 544 CPIPQNVPGMGELALSPLIFGASS-------TLLNANHYDVYFSGMPSRNGQILRRHGDV 596
+ Q G L+ G S+ LN+ + +F GD+
Sbjct: 383 AKLSQGETG------RLLVRGCSNFGGYLKRPHLNSTDAEGWFDT------------GDL 424
Query: 597 FERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 656
+ + GY R +GR+ D + GG + VEIE + + V + A + P G
Sbjct: 425 AFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPA-VAQVAIVAYPDERLGERAC 483
Query: 657 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716
+VV + + A+Q + + + +LP T K+ + LR
Sbjct: 484 AVVVPKPGCTLDFAAMVAFLKAQKVALQ------YIPERLEVVDALPATPAGKIQKFRLR 537
Query: 717 K 717
+
Sbjct: 538 E 538
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 100/514 (19%), Positives = 185/514 (35%), Gaps = 88/514 (17%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS 271
T ++L E +A AL A G+ GS +A+ ++ V++ A +L G + +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 272 LEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDI 331
E + +L + + T L ++ + A + ++ + +
Sbjct: 61 NERTNQLEDLDVQLLLTDSL-------------LEEKDFQADSLDRIEAAG---RYETSL 104
Query: 332 SWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH 391
S ++ ++F+SGTTG+PKA+P T + +A + +
Sbjct: 105 S------------------ASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKEN 146
Query: 392 MDIRKAD--IVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQD---AKV 446
+ + D +++ P L + G +++ L+ GA++ + F + ++ +V
Sbjct: 147 LGFTEDDNWLLSLP--LYHISGLSILFRWLIEGATLR------IVDKFNQLLEMIANERV 198
Query: 447 TMLGVVPSIV-RTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 505
T + +VP+ + R ++R G A L + P+ G
Sbjct: 199 THISLVPTQLNRLLDEGG-----HNENLRKILLGGSAIPAP--LIEEAQQYGLPIYLSYG 251
Query: 506 GTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGA 565
TE T + + P G ++ I D N G GE I
Sbjct: 252 MTETCSQVTTATPEMLHARPDVGRPLAGREIKI-KVD------NKEGHGE------IMVK 298
Query: 566 SSTLLNANHYDVYF---SGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 622
+ L+ Y P+ Q GD+ E G+ GR DD + GG +
Sbjct: 299 GANLMKG-----YLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENI 353
Query: 623 SSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSA 682
EIE + + E A+ VP PD Q+ + + +S +L
Sbjct: 354 YPEEIETVLYQH-PGIQE--AVVVPKPDAEWGQVPVAYIVSES---DISQAKLIAYLTEK 407
Query: 683 VQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVL 715
+ K +KV L LP A+ K++R L
Sbjct: 408 LAK-----YKVPIAFEKLDELPYNASGKILRNQL 436
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653
GD+ + GY GR DD + GG + EIE + + V E A +GVP + G
Sbjct: 293 GDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPA-VEEAAVVGVPDDEWG- 350
Query: 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMR 712
Q V F N P + +L+ + + KL +K PLP LPR A+ K+ R
Sbjct: 351 -QR--PVAFVVPNDDPVSVEELQ----AFLADKLAK-YKRPKRWYPLPELPRNASGKIDR 402
Query: 713 RVLRK 717
LR+
Sbjct: 403 AALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653
GD+ R + GY GR D M + G + + IERI + E A VP P G
Sbjct: 386 GDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYP-DATEVAVYAVPDPVVGD 444
Query: 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 713
+ + +V+ + + P + F +A Q L P S+V LPRTAT KV++R
Sbjct: 445 QVMAALVLAPGAKFDPDAFAE----FLAA-QPDLGPKQWPSYVRVCAELPRTATFKVLKR 499
Query: 714 VLRKQ 718
L +
Sbjct: 500 QLSAE 504
|
Length = 529 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-08
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 601 SG--GYYRAHG------RADDTMNLGGIKVSSVEIERICNAV--DSNVLETAAIGVPPPD 650
SG G G R D + GG V+S E+E A+ V E A IG+P P
Sbjct: 399 SGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVE---EALYTHPAVAEVAVIGLPDPK 455
Query: 651 GGPEQLTIVVVFKDSN-YTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATN 708
E +T VVV K T +L ++ + +L FKV V+ + LPR +
Sbjct: 456 WI-EAVTAVVVPKAGATVTEDEL----IAH---CRARLAG-FKVPKRVIFVDELPRNPSG 506
Query: 709 KVMRRVLRKQLAQLDQ 724
K+++R LR++ A
Sbjct: 507 KILKRELRERYAGAFT 522
|
Length = 523 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 94/388 (24%), Positives = 148/388 (38%), Gaps = 76/388 (19%)
Query: 361 ILFSSGTTGEPKAIPWTNAT-PFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LVYAS 418
+ F+SGTTG PK + T+ + P + + ++ DI ++ GW W +A
Sbjct: 89 LYFTSGTTGLPKLVLHTHVSYPVGHLSTM-YWIGLQPGDIHLNISSPGWAKHAWSSFFAP 147
Query: 419 LLNGASIALYNGSPLGSGFA-KFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 477
GA++ N + ++ VT P++ R + + + YD +R
Sbjct: 148 WNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQQD-LAQYD-VRLREAV 205
Query: 478 STGEASN------VDEYLWLMGRALYKPVIEYCGGTEI--------GGGFITGSLLQAQS 523
S GE N V + L R Y G TE G GS
Sbjct: 206 SAGEPLNPEVIERVKKAWGLTIRDGY-------GQTETTAMIGNSPGQKVKPGS------ 252
Query: 524 LAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY--FSG 581
P G ++ +L ++G IP GE+AL L + + G
Sbjct: 253 ---MGRPLPGYRVVLLDDEGKEIPVTE---GEIALD----------LGDRPIGLMLGYMG 296
Query: 582 MPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN 637
P + R R GD R GY GRADD ++S E+E S
Sbjct: 297 DPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVE-------SA 349
Query: 638 VLETAAIG----VPPPDGGPEQLTIV---VVFKDSNYTP-PDLNQLRMSFNSAVQKKLNP 689
+LE A+ VP PD P +L + +V K Y P + L + + V+++L P
Sbjct: 350 LLEHPAVAEAAVVPSPD--PIRLAVPKAYIVLK-PGYEPSRE---LALELFAHVRERLAP 403
Query: 690 LFKVSHVVPLPSLPRTATNKVMRRVLRK 717
++ + + LP+T + K+ R LRK
Sbjct: 404 YKRIRRIEFVGELPKTISGKIRRVELRK 431
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 50/255 (19%), Positives = 93/255 (36%), Gaps = 42/255 (16%)
Query: 215 ELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLE 273
EL +A L A G+ G +A+ + + VV LA++ AG V + ++ +
Sbjct: 4 ELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPA-- 61
Query: 274 ISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISW 333
RL I+ DA A L + A + R +
Sbjct: 62 --ERLAF-----------ILE-----------DAGARLLLTDSA------LASRLAGLVL 91
Query: 334 LDFLERVRKLKENEFAAVEQPVEAFTN------ILFSSGTTGEPKAIPWTNATPFKAAAD 387
L +L + A P +A + ++++SG+TG PK + T+ + A
Sbjct: 92 PVILLDPLELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAW 151
Query: 388 AWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGF---AKFVQDA 444
+ D V +L + ++ +LL GA++ + A + +
Sbjct: 152 LARRYGLDPDDRVLQFASLSFDASVEEIFGALLAGATLVVPPEDEERDDAALLAALIAEH 211
Query: 445 KVTMLGVVPSIVRTW 459
VT+L + PS++
Sbjct: 212 PVTVLNLTPSLLALL 226
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 8e-08
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653
GD+ + GY GR D + GG V E+E + + V+E+A IGVP PD G
Sbjct: 382 GDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPG-VVESAVIGVPHPDFG- 439
Query: 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMR 712
E +T VVV K D + + + + FK V + LPR KV +
Sbjct: 440 EGVTAVVVPKPG--AALDEAAILAALKGRLAR-----FKQPKRVFFVDELPRNTMGKVQK 492
Query: 713 RVLRKQLAQL 722
+LR+Q A L
Sbjct: 493 NLLREQYADL 502
|
Length = 504 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 592 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPP 649
R GD+ R GY GR D +N GG K+++ E+E N + + V + A + +P
Sbjct: 417 RSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVE---NLLLRHPAVHDAALVAMPDE 473
Query: 650 DGGPEQLTIVVVFKDSNYTPPDLNQ-LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTAT 707
G E+ +V K+ L + LR +A FK+ + + SLP TA
Sbjct: 474 LLG-EKSCAFIVVKEPPLRAAQLRRFLRERGLAA--------FKLPDRIEFVDSLPLTAV 524
Query: 708 NKVMRRVLRKQLA 720
K+ ++ LR++LA
Sbjct: 525 GKIDKKALRRRLA 537
|
Length = 542 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 108/524 (20%), Positives = 181/524 (34%), Gaps = 88/524 (16%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISK 282
+A L LG+ +G + +P +++ A++ G V S E++A +
Sbjct: 61 LAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLALFSHRKSELTAYASQIE 120
Query: 283 AKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRK 342
II + + D A + +K + + G
Sbjct: 121 PAL-----YIIDRA-----HSLFDYDD-FARQLQSKLPTLRNIIVAGQ-----------T 158
Query: 343 LKENEFAAVEQPVEAFT-------NILF---SSGTTGEPKAIPWTN---ATPFKAAADAW 389
+ F +E P E + F S G+TG PK IP T+ + + +
Sbjct: 159 GEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEI- 217
Query: 390 CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY-NGSPLGSGFAKFVQDAKVTM 448
C + + + A P + + G + L + SP F ++ KVT+
Sbjct: 218 CWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPT-DCF-PLIERHKVTV 275
Query: 449 LGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTE 508
+VP V W D SS++ G A R + P + C +
Sbjct: 276 TALVPPAVALWMQAASKSRADLSSLK-LLQVGGAKFSAA----AARRV--PAVFGCQLQQ 328
Query: 509 IGG---GFITGSLLQAQSLAAFSTPAMGC------KLFILGNDGCPIPQNVPGMGELALS 559
+ G G + + L + F+T G ++ ++ + G P+ GM
Sbjct: 329 VFGMAEGLVNYTRLDDPAEIIFTT--QGRPMSPDDEVRVVDDHGNPVAPGETGM------ 380
Query: 560 PLIFGASSTLLNANHYDV--YFSGMPSRNGQILR-----RHGDVFERTSGGYYRAHGRAD 612
LL Y Y+ P N GD+ T GY GRA
Sbjct: 381 ---------LLTRGPYTFRGYYKA-PEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAK 430
Query: 613 DTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 672
D +N GG K+++ EIE + A V + A + +P G E+ +V +D L
Sbjct: 431 DQINRGGEKIAAEEIENLLLA-HPAVHDAALVSMPDELLG-EKSCAFIVVRDPALKAAQL 488
Query: 673 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716
+ A + KL + + SLP TA KV ++ LR
Sbjct: 489 RRFLRERGLA-EYKLPDRVEF-----VDSLPLTAVGKVDKKALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAV-DSNVLETAAIGVPPPDGG 652
GDV + GY R R+ D + GG +SS+++E + AV V E A IGV P
Sbjct: 415 GDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENL--AVGHPKVAEAAVIGVYHPKWD 472
Query: 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMR 712
L IV + T ++ + + + K P V + ++P TAT K+++
Sbjct: 473 ERPLLIVQLKPGETATREEILK---YMDGKIAKWWMP----DDVAFVDAIPHTATGKILK 525
Query: 713 RVLRKQLA 720
LR+Q
Sbjct: 526 TALREQFK 533
|
Length = 542 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 119/548 (21%), Positives = 209/548 (38%), Gaps = 99/548 (18%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN-VNSVVIYLAIVLAGYIVVSIADSFA 270
T + V +A AL +LG+ G +A + N + +Y A+ G ++ ++ +
Sbjct: 27 TYADFYRRVRRLANALESLGVKPGDRVAT-LAWNTHRHLELYFAVPGMGAVLHTLNPRLS 85
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKS-IPLYRVIDAQAPLAIVIPAKGSSFSMKLRDG 329
+I+ + ++ K IF D +PL I + P + + +
Sbjct: 86 PEQIAYIINHAEDKVIFV-------DDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLP 138
Query: 330 D-ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPF-----K 383
+ ++ + LE E+ E + ++SGTTG PK + +++ +
Sbjct: 139 NVYAYEELLEEE----SPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLAS 194
Query: 384 AAADAWCHMDIRKADIV----------AWPTNLGWMMGPWLVYASLLNGASIALYNGSPL 433
A D+ + + ++D V AW G L YA+ + GA + L
Sbjct: 195 ALPDS---LGLSESDTVLPVVPMFHVNAW--------G--LPYAATMVGAKLVLPGRYLD 241
Query: 434 GSGFAKFVQDAKVTMLGVVPSI---VRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 490
+ +++ KVT+ VP+I + + N G D SS+R G A
Sbjct: 242 PASLLDLIEEEKVTVSAGVPTIWLGLLNYLEAN---GKDLSSLRRVVVGGSALP----RS 294
Query: 491 LMGRA--LYKPVIEYCGGTE---IG-GGFITGSLLQAQSLAAFS------TPAMGCKLFI 538
L+ + VI G TE +G + L+ P G +L I
Sbjct: 295 LIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRI 354
Query: 539 LGNDGCPIPQNVPGMGEL-ALSPLI----FGASSTLLNANHYDVYFSGMPSRNGQILRRH 593
+ ++G +P + +GEL P + + D +F R
Sbjct: 355 VDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEELT-RDGWF------------RT 401
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDG 651
GDV GY + RA D + GG +SSVE+E NA+ ++ V E A +GVP
Sbjct: 402 GDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELE---NALMAHPAVAEAAVVGVPHEKW 458
Query: 652 GPEQLTIVVVFKDSNYTPPDL-NQLRMSFNSAVQKKLNPLFKVSH-VVPLPSLPRTATNK 709
G L +VV+ + T +L L K + + VV + +P+T+ K
Sbjct: 459 GERPLAVVVLKPGAKVTEEELLEHL---------AKKVAKWWLPDRVVFVDEIPKTSVGK 509
Query: 710 VMRRVLRK 717
++ LR+
Sbjct: 510 FDKKALRE 517
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 103/517 (19%), Positives = 188/517 (36%), Gaps = 55/517 (10%)
Query: 209 KSMTLKELRAEVWLVAYAL-NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIAD 267
+ MT K+L V VA L L + KG IAI ++ +V+ AI I V +
Sbjct: 26 EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNI 85
Query: 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLR 327
E+ +L+ S +F + + ++ + +V Q ++I +
Sbjct: 86 RLTENELIFQLKDSGTTVLFVEKTF--QNMALSMQKVSYVQRVISITSLKEIEDRK---I 140
Query: 328 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD 387
D VE+ A I ++SGTTG+PK T F A +
Sbjct: 141 DN--------------------FVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALN 180
Query: 388 AWCHMDIRKAD--IVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAK 445
+D+ D IV P +G + G I P + ++ K
Sbjct: 181 NTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKA--LSMIEKHK 238
Query: 446 VTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 505
VT++ VP+I + + + + + S+R F + G + + R + G
Sbjct: 239 VTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDRGF--LFGQGFG 296
Query: 506 GTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIF 563
TE F+ + + + P + C ++ + + +GEL + P +
Sbjct: 297 MTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVG--EVGELLIRGPNVM 354
Query: 564 GASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVS 623
+A + ++G + GD+ G+ GR + + GG +
Sbjct: 355 KEYWNRPDATEETI-------QDGWLCT--GDLARVDEDGFVYIVGRKKEMIISGGENIY 405
Query: 624 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAV 683
+E+E++ N + V E A +G G + +V S D+ + F +
Sbjct: 406 PLEVEQVINKLSD-VYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAK- 463
Query: 684 QKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQL 719
+K+ +V L LP+ AT K+ + L QL
Sbjct: 464 -------YKIPKEIVFLKELPKNATGKIQKAQLVNQL 493
|
Length = 496 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653
GD+ R + G+ GR D M + G +S+ IERI + A VP G
Sbjct: 385 GDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERIL-LRHPAINRVAVYAVPDERVGD 443
Query: 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 713
+ + +V+ + + P F +A Q L +V LP TATNKV++R
Sbjct: 444 QVMAALVLRDGATFDPDAFAA----FLAA-QPDLGTKAWPRYVRIAADLPSTATNKVLKR 498
Query: 714 VLRKQ 718
L Q
Sbjct: 499 ELIAQ 503
|
Length = 540 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE---RICNAVDSNVLETAAIGVPPPD 650
D+ + GY GR + GG V E+E V + +G+P P
Sbjct: 329 DDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQ----DVCVLGLPDPH 384
Query: 651 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNK 709
G E +T + V KD + + +L A++ +L+P FK H +P+P LPR K
Sbjct: 385 WG-EVVTAIYVPKDPSISLEELKT-------AIKDQLSP-FKQPKHWIPVPQLPRNPQGK 435
Query: 710 VMRRVLRKQLAQ 721
+ R+ L++ Q
Sbjct: 436 INRQQLQQIAVQ 447
|
Length = 452 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 1e-06
Identities = 108/516 (20%), Positives = 185/516 (35%), Gaps = 63/516 (12%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+ EL +A+AL G+ + + M ++ VV LAI+ AG V + +
Sbjct: 537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYP 596
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGD 330
+ ++ L S + + +Q + R +PL + + L
Sbjct: 597 AERLAYMLEDSGVQLLLSQSHLGR---KLPLAAGVQV----------------LDLDRPA 637
Query: 331 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC 390
+WL+ E E E ++++SG+TG+PK +A ++ C
Sbjct: 638 -AWLE-------GYSEENPGTELNPENLAYVIYTSGSTGKPKGA----GNRHRALSNRLC 685
Query: 391 HMDIR----KADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGF--AKFVQ-- 442
M D V T + + W + L++GA + + + G AK V+
Sbjct: 686 WMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVV---AAPGDHRDPAKLVELI 742
Query: 443 -DAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVI 501
V L VPS+++ + + +S+R +GEA D + + +
Sbjct: 743 NREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLY 800
Query: 502 EYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSP 560
G TE + + + P +IL + P+P V G LA
Sbjct: 801 NLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRG 860
Query: 561 LIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGI 620
L A F P G+ + R GD+ + G GR D + L G+
Sbjct: 861 L---ARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGL 917
Query: 621 KVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFN 680
++ EIE V E A + V DG +QL VV + R +
Sbjct: 918 RIELGEIEARLLEHPW-VREAAVLAV---DG--KQLVGYVVLESEG------GDWREALK 965
Query: 681 SAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVL 715
+ + L P + V + + L LP T K+ R+ L
Sbjct: 966 AHLAASL-PEYMVPAQWLALERLPLTPNGKLDRKAL 1000
|
Length = 5163 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV--NSVVIYLAIVLAGYIVVSIA 266
K++T EL +A L + GL KG+ +AI MP NV V I A++ AGY+VV++
Sbjct: 47 KAITYGELDELSRALAAWLQSRGLAKGARVAIMMP-NVLQYPVAIA-AVLRAGYVVVNVN 104
Query: 267 DSFASLEISARLRISKAKAIF 287
+ E+ +L+ S A+AI
Sbjct: 105 PLYTPRELEHQLKDSGAEAIV 125
|
Length = 557 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 609 GRADDTMNLGGIKVSSVEIERICNAVDSNVLE---TAAIGVPPPDGGPEQLTIVVVFKDS 665
GR D + + G+ + EIE V +E TAA V G ++L V F
Sbjct: 448 GREKDMIIINGVNYYNHEIEAAVEQVPG--VEPSFTAACAVRDAGSGTDEL--AVFFVPR 503
Query: 666 NYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLP--SLPRTATNKVMRRVLRKQL 719
L L + + V +K+ ++V+PL P+T+ K+ R LRK+
Sbjct: 504 YDLDDRLAALLRAIRTHVARKIG--IAPAYVIPLAKEDFPKTSLGKIQRAQLRKRF 557
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 38/199 (19%)
Query: 529 TPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLN-------ANHYDVYFS 580
P G + ++ DG P+P + +GEL + P +F LN A D +F
Sbjct: 297 LPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDG---YLNRPDATAAAFTADGWF- 352
Query: 581 GMPSRNGQILRRHGDVFERTSGGYYRAHGR-ADDTMNLGGIKVSSVEIERICNAV--DSN 637
R GDV G +R GR + D + GG ++ + EIE A+
Sbjct: 353 -----------RTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIE---TALLGHPG 398
Query: 638 VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVV 697
V E A +GVP D G +++ VV D ++L + F V ++L+ + V
Sbjct: 399 VREAAVVGVPDDDLG-QRIVAYVVGAD----DVAADEL-IDF---VAQQLSVHKRPREVR 449
Query: 698 PLPSLPRTATNKVMRRVLR 716
+ +LPR A KV+++ L
Sbjct: 450 FVDALPRNAMGKVLKKQLL 468
|
Length = 471 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 32/163 (19%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
++T EL +A AL A G+ G +A+ MP +V L I+LAG V I
Sbjct: 12 TLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQ 71
Query: 270 ASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDG 329
+ +A L + A+A+ T + + +++ A
Sbjct: 72 PAERRAAILARAGARAVLTDP------------GLAQPEEAPDLLVVA------------ 107
Query: 330 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK 372
D + + + ++F+SG+TGEPK
Sbjct: 108 DDAAAA--------ESPAPPPPRVDPDDLAYVIFTSGSTGEPK 142
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 592 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651
R DV G R GR DD + GG + E+ER+ V E IG+P
Sbjct: 379 RTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPG-VTEVVVIGLPDERW 437
Query: 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 711
G VV + + L+ + A K+ F + LP+ A NKV+
Sbjct: 438 GQSVTACVVPREGETLSADALDTFCRASELADFKRPRRYFFLDE------LPKNAMNKVL 491
Query: 712 RRVL 715
RR L
Sbjct: 492 RRQL 495
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 121/533 (22%), Positives = 200/533 (37%), Gaps = 85/533 (15%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS 271
T E A+AL A G+ +G +A+ + + ++L G I V I +
Sbjct: 48 TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRG 107
Query: 272 LEISARLRISKAKAIFTQ-------DLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSM 324
++ LR S A+ + + + GD +P ++DA P ++ +PA S+ +
Sbjct: 108 PQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDA--PASVSVPAGWSTAPL 165
Query: 325 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKA 384
D AA QP + IL++SGTTG K + +A +
Sbjct: 166 PPLDAPAP----------------AAAVQPGDTAA-ILYTSGTTGPSKGVCCPHAQFYWW 208
Query: 385 AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPL-------GSGF 437
++ ++I D++ T L P L + + LN AL G+ SGF
Sbjct: 209 GRNSAEDLEIGADDVLY--TTL-----P-LFHTNALNAFFQALLAGATYVLEPRFSASGF 260
Query: 438 AKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR-CFGSTGEASNVDEYLWLMGRAL 496
V+ T+ ++ ++V S + +R G A+ + G L
Sbjct: 261 WPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGVDL 320
Query: 497 YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGEL 556
++ G TE F+ +Q + A G + ++ +P PG EL
Sbjct: 321 ----LDGYGSTETN--FVIAVTHGSQRPGSMGRLAPGFEARVVDEHDQELPDGEPG--EL 372
Query: 557 AL---SPLIFGASSTLLNANHYDVYFSGMPSRNGQILRR---H-GDVFERTSGGYYRAHG 609
L P F A Y GMP + + R H GD R + G++R
Sbjct: 373 LLRADEPFAF--------ATGYF----GMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVD 420
Query: 610 RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP 669
R D + G +SS E+E++ + V A VP G E + VV+ + P
Sbjct: 421 RIKDAIRRRGENISSFEVEQVLLS-HPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEP 479
Query: 670 PDLNQL---RMSFNSAVQKKLNPLFKVSHVVP-LPSLPRTATNKVMRRVLRKQ 718
L + R+ F V V + +LP+T KV + VLR+Q
Sbjct: 480 VALVRHCEPRL-----------AYFAVPRYVEFVAALPKTENGKVQKFVLREQ 521
|
Length = 542 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 89/374 (23%), Positives = 140/374 (37%), Gaps = 40/374 (10%)
Query: 356 EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIR--KADIVAWPTNLGWMMGPW 413
+A ++SGTTG PKA +A P DA C +R D + + G
Sbjct: 145 DALAYATYTSGTTGPPKAAIHRHADPL-TFVDAMCRKALRLTPEDTGLCSARMYFAYGLG 203
Query: 414 -LVYASLLNGASIALYNGSPLGSGFAKFVQDA-KVTMLGVVPSIVRTWKSTNCIDGYDWS 471
V+ L G S A+ N +P+ A + ++L VP+ + D +
Sbjct: 204 NSVWFPLATGGS-AVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSPDSF--R 260
Query: 472 SIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL--LQAQSLAAFST 529
S+RC S GEA + LM P+++ G TE+G F++ + + +L
Sbjct: 261 SLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLP 320
Query: 530 PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQI 589
P ++ ++ DG V G + G + N D + N
Sbjct: 321 PY---EIRVVAPDGTTAGPGVEG------DLWVRGPAIAKGYWNRPDSPVA-----NEGW 366
Query: 590 LRRHGDVFERTSGGYYRAHG-RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 648
L V + + RADDT +GG+ V E+ER+ ++ V E A + V
Sbjct: 367 LDTRDRV--CIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEA-VAEAAVVAVRE 423
Query: 649 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKL---NPLFKVSH-VVPLPSLPR 704
G +V + S + + L FKV H + LPR
Sbjct: 424 STGASTLQAFLV--------ATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPR 475
Query: 705 TATNKVMRRVLRKQ 718
T K++R LRKQ
Sbjct: 476 TPNGKLVRGALRKQ 489
|
Length = 705 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 55/195 (28%), Positives = 76/195 (38%), Gaps = 28/195 (14%)
Query: 530 PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL-------LNANHY-DVYFSG 581
P ++++L D P+P VPG EL I G L A + F
Sbjct: 263 PIANTQVYVLDEDLQPVPPGVPG--EL----YIGGDGVARGYLGRPELTAERFVPDPFDD 316
Query: 582 MPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLET 641
G L R GD+ G GRADD + + G ++ EIE A +
Sbjct: 317 ----PGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPG--VAD 370
Query: 642 AAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLP 700
A + V G ++L VV K PD LR +A++ L P + V + V L
Sbjct: 371 AVVVVREEGPGDQRLVAYVVPKAG--AAPDAEALR----AALRATL-PAYMVPAAFVQLD 423
Query: 701 SLPRTATNKVMRRVL 715
LP T KV R+ L
Sbjct: 424 ELPLTPNGKVDRKAL 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 49/194 (25%), Positives = 75/194 (38%), Gaps = 28/194 (14%)
Query: 530 PAMGCKLFILGNDGCPIPQNVPGMGELALS-PLIFGASSTLLNANHYDVYFSGMPSRNGQ 588
P G ++ +L DG + Q G E+ + PL+ + P +
Sbjct: 344 PTPGLRVALLDEDGREVAQGEVG--EICVRGPLVMDG-------------YWNRPEETAE 388
Query: 589 ILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAI 644
R GDV G+Y R D + GG V E+E A V + A I
Sbjct: 389 AFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVED-VLAEHPAVAQVAVI 447
Query: 645 GVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPR 704
GVP G E +T VVV + D +L+ + V+++ + V + SLP
Sbjct: 448 GVPDEKWG-EAVTAVVVLRPG--AAVDAAELQ----AHVKERKGSVHAPKQVDFVDSLPL 500
Query: 705 TATNKVMRRVLRKQ 718
TA K ++ LR +
Sbjct: 501 TALGKPDKKALRAR 514
|
Length = 524 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 9e-06
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653
GD+ GY R+ D + GG +SS+E+E + + VLE A + P G
Sbjct: 406 GDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPA-VLEAAVVARPDEKWGE 464
Query: 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 713
VV+ ++ T +L + + ++KL FKV V LP+TAT K+ +
Sbjct: 465 TPCAFVVLKPGASVTEEEL----IEY---CREKL-AHFKVPKTVEFVELPKTATGKIQKF 516
Query: 714 VLRK 717
VLR+
Sbjct: 517 VLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 592 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651
R GDV G+ R D + GG ++S E+ER+ + V E A IGV
Sbjct: 376 RSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYEL-PEVAEAAVIGVHDDRW 434
Query: 652 GPEQLTIVVVFKDSNYTPPDLNQ-LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNK 709
G +VV+ + T L++ R S FKV + LPR + K
Sbjct: 435 GERITAVVVLNPGATLTLEALDRHCRQRLAS---------FKVPRQLKVRDELPRNPSGK 485
Query: 710 VMRRVLRKQL 719
V++RVLR +L
Sbjct: 486 VLKRVLRDEL 495
|
Length = 497 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 40/196 (20%)
Query: 538 ILGNDGCPIPQNVPGMGELAL-SPLIFGA--SSTLLNANHYD---VYFSGMPSRNGQILR 591
+ DG P+PQ G L P F S NA+ +D Y SG
Sbjct: 367 VADADGNPLPQGEVGR--LMTRGPYTFRGYYKSPQHNASAFDANGFYCSG---------- 414
Query: 592 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651
D+ GY GR D +N GG K+++ EIE + + V+ A + +
Sbjct: 415 ---DLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPA-VIHAALVSMEDELM 470
Query: 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPL----FKV-SHVVPLPSLPRTA 706
G + +VV L+ +++ L FK+ V + SLP TA
Sbjct: 471 GEKSCAFLVV----------KEPLK---AVQLRRFLREQGIAEFKLPDRVECVDSLPLTA 517
Query: 707 TNKVMRRVLRKQLAQL 722
KV ++ LR+ LA
Sbjct: 518 VGKVDKKQLRQWLASR 533
|
Length = 536 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 109/564 (19%), Positives = 192/564 (34%), Gaps = 108/564 (19%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
T ++L V +A L ALG+ G + I P ++ A G I+V+I ++
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLR--- 327
+ E+ L S + + ++ D A L ++P L
Sbjct: 106 ASELEYALGQSGVRWVIC----------ADAFKTSDYHAMLQELLPGLAEGQPGALACER 155
Query: 328 ---------------DGDISWLDFLERVRKLKENEFAAVEQPVEAF--TNILFSSGTTGE 370
G ++W + R + A + ++ NI ++SGTTG
Sbjct: 156 LPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGF 215
Query: 371 PKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLL---NGASIAL 427
PK ++ + + + D + P L G +V A+L GA +
Sbjct: 216 PKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFG--MVLANLGCMTVGACLVY 273
Query: 428 YNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV 485
N + PL + + V++ + T L VP++ +D SS+R TG
Sbjct: 274 PNEAFDPLAT--LQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLR----TG----- 322
Query: 486 DEYLWLMG-----RALYKPVIE--YCGGTEIGGGFITGSLLQAQSLAAFS---------- 528
+M + + V++ + +I G S + Q+ AA
Sbjct: 323 -----IMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGR 377
Query: 529 -TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNG 587
P + K ++ DG +P GE+ L S + + P
Sbjct: 378 TQPHLEVK--VVDPDGATVP-----RGEIG--ELCTRGYSVMKG-------YWNNPEATA 421
Query: 588 QILRRH-----GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETA 642
+ + GD+ GY R GR+ D + GG + EIE V +
Sbjct: 422 ESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFT-HPAVADVQ 480
Query: 643 AIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQL---RMSFNSAVQKKLNPLFKV-SHVVP 698
GVP G E + V + + +L + R++ FKV +
Sbjct: 481 VFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAH-----------FKVPRYFRF 529
Query: 699 LPSLPRTATNKVMRRVLRKQLAQL 722
+ P T T KV + +R+ +
Sbjct: 530 VDEFPMTVTGKVQKFRMREISIEE 553
|
Length = 558 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 118/524 (22%), Positives = 193/524 (36%), Gaps = 63/524 (12%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+T EL +A+ L ALG+ + I + ++ VV LAI+ AG V + +
Sbjct: 1600 LTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYP 1659
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGD 330
++ + S + + TQ + A+ PL + S+ L D
Sbjct: 1660 RERLAYMIEDSGIELLLTQ-------------SHLQARLPLPDGLR------SLVLDQED 1700
Query: 331 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK--AIPWTNATP-FKAAAD 387
WL+ + AV + ++++SG+TG PK A +
Sbjct: 1701 -DWLE-------GYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQE 1752
Query: 388 AWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS--IALYNGSPLGSGFAKFVQDAK 445
A+ + AD+V T+ + + W ++ L+NGA IA + ++ +
Sbjct: 1753 AY---QLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQ 1809
Query: 446 VTMLGVVPSIVRTWKS-----TNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV 500
VT L VPS+++ + + S+R GEA V+ + R +
Sbjct: 1810 VTTLHFVPSMLQQLLQMDEQVEHPL------SLRRVVCGGEALEVEALRPWLERLPDTGL 1863
Query: 501 IEYCGGTE----IGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGEL 556
G TE + L+ + P +IL P+P V GEL
Sbjct: 1864 FNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGV--AGEL 1921
Query: 557 ALSPLIFGASSTLLN-ANHYDVYFSGMP-SRNGQILRRHGDVFERTSGGYYRAHGRADDT 614
L + G + LN F P G L R GD+ + G GR D
Sbjct: 1922 YLGGV--GLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQ 1979
Query: 615 MNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQ 674
+ + G ++ EIE V E I +G +QL VV D D Q
Sbjct: 1980 VKIRGFRIELGEIEARLREQGG-VREAVVIAQDGANG--KQLVAYVVPTDPGLVDDDEAQ 2036
Query: 675 --LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVL 715
LR + ++ L P + V +H+V L +P T K+ R+ L
Sbjct: 2037 VALRAILKNHLKASL-PEYMVPAHLVFLARMPLTPNGKLDRKAL 2079
|
Length = 3956 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 32/143 (22%), Positives = 46/143 (32%), Gaps = 19/143 (13%)
Query: 576 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 635
D YF G ++RR G GY+ R DT G VS+ E+E +
Sbjct: 317 DAYF-----NTGDLVRRDGF-------GYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHP 364
Query: 636 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSH 695
V E GV P + D + + PLF
Sbjct: 365 G-VEEANVYGVEVPGTEGRAGMAALTLAPG--AAFDPQAFAAHLDEQLPAYARPLF---- 417
Query: 696 VVPLPSLPRTATNKVMRRVLRKQ 718
+ ++ T T K + LRK+
Sbjct: 418 LRVQAAMETTGTFKYQKTDLRKE 440
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 22/169 (13%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSIADSFASLEISARLR 279
+A AL +LGL+ G IAI ++ N ++ LAI +AG++ V + + + I L
Sbjct: 19 IAAALQSLGLEPGDRIAI---LSKNCAEWIIADLAIWMAGHVSVPLYPTLTAETIRYVLE 75
Query: 280 ISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 339
S AKA+F K + I S W D L
Sbjct: 76 HSDAKALFV-------GKLDDWDAMKAGVPEGLPTIILFPYSTL----KDHYKWDDLLAA 124
Query: 340 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA 388
L+ E I+++SGTTG+PK + + F AA
Sbjct: 125 TEPLQGR----PLPEPEDLATIVYTSGTTGQPKGVMLSFGA-FAFAAQG 168
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 592 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651
R GD+ GY+ R +N+ G KV E+E + VLE IG P P
Sbjct: 313 RTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQ-HPAVLEVCVIGRPDPRR 371
Query: 652 GPEQLTIVVVFKDS---NYTPPDLNQL---RMSFNSAVQKKLNPLFKVSHVVPLPSLPRT 705
G E + VV K T D+ + RM A K + + LP+T
Sbjct: 372 G-EVVKAFVVLKPDYRGKVTEEDIIEWCRERM----AAYKY------PRIIEFVDELPKT 420
Query: 706 ATNKVMRRVL 715
A+ KV+ R+L
Sbjct: 421 ASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 127/575 (22%), Positives = 206/575 (35%), Gaps = 114/575 (19%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
+ T EL A+V A L++LG+ G +A +P + AG I I
Sbjct: 58 TWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLL 116
Query: 270 ASLEISARLRISKAKAIFT------QDLIIRGDKSIPLYRVIDAQAPLAIVI-------- 315
+I+ LR + AK + T D+ + + V+ A L V+
Sbjct: 117 EPEQIAELLRAAGAKVLVTLGPFPGTDIWQK------VAEVLAALPELRTVVEVDLARYL 170
Query: 316 -PAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF-SSGTTGEPKA 373
K + + R LDF + + + + F + GTTG PK
Sbjct: 171 PGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKL 230
Query: 374 IPWTNATPFKAAADAWC---HMDIRKADIVAWPTNL---GWMMGPWLVYASLLNGASIAL 427
T+ A+AW + + D V L ++ L A L GA + L
Sbjct: 231 AQHTHGN---EVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGL--APLARGAHVVL 285
Query: 428 YNGSPLG-------SGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 480
+P G + F K V+ ++ L VP++ +DG+D SS+R + G
Sbjct: 286 --ATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAA-LLQVPVDGHDISSLR-YALCG 341
Query: 481 EASNVDEYLWLMGRALYK--------PVIEYCGGTE---------IGGGFITGSLLQAQS 523
A + +++ ++E G TE G GS+
Sbjct: 342 AAP--------LPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSV--GLR 391
Query: 524 LAAFSTPAMGCKLFILGNDGCPIPQNVP--GMGELALS-PLIFGASSTLLNANH-YDVYF 579
L P ++ IL + G ++ +G L ++ P +F S L A H ++
Sbjct: 392 L-----PYQRVRVVILDDAG-RYLRDCAVDEVGVLCIAGPNVF---SGYLEAAHNKGLWL 442
Query: 580 SGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVL 639
G + R D GY+ GRA D + GG + IE + V
Sbjct: 443 EDGWLNTGDLGRIDAD-------GYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPA-VA 494
Query: 640 ETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLN---QLRMSFNSAVQKKLNPLFKVSHV 696
AA+G P G + V + ++ T +L + ++ +AV K HV
Sbjct: 495 LAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPK---------HV 545
Query: 697 VPLPSLPRTATNKV---------MRRVLRKQLAQL 722
L +LP+TA K+ +RRVLR L
Sbjct: 546 RILDALPKTAVGKIFKPALRRDAIRRVLRAALRDA 580
|
Length = 632 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 19/179 (10%)
Query: 209 KSMTLKELRAEV-WLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIAD 267
++++ +EL E L Y G+ KG + + M + V+ Y AI+ A +VV +
Sbjct: 34 RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNP 93
Query: 268 SFASLEISARLRISKAK-AIFTQDL---IIRGDKSIPLYRVIDAQ------APLAIVIPA 317
E++ + S A+ AI +L + ++ L VI AQ A I +PA
Sbjct: 94 MNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPA 153
Query: 318 ---KGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKA 373
G ++W + L + + V +T SGTTG PK
Sbjct: 154 WLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYT-----SGTTGVPKG 207
|
Length = 546 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 120/535 (22%), Positives = 200/535 (37%), Gaps = 76/535 (14%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
++ EL + +A+ L A G+ +AI + VV LA++ AG V + ++
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYP 2088
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGD 330
+ ++ L S A + TQ R + + PL PA + + D D
Sbjct: 2089 AERLAYMLEDSGAALLLTQ-------------RHLLERLPL----PAGVARLPL---DRD 2128
Query: 331 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC 390
W D+ + + A E ++++SG+TG PK + ++ A A C
Sbjct: 2129 AEWADYPD---TAPAVQLAG-----ENLAYVIYTSGSTGLPKGVAVSHG-----ALVAHC 2175
Query: 391 H-----MDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSP-LGSGFAKFVQDA 444
++ AD + + + LLNGA + + + ++
Sbjct: 2176 QAAGERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERH 2235
Query: 445 KVTMLGVVPSIVRTWKSTNCIDGYDWSSIR--CFGSTGEASNVDEY-LWLMG-RALYKPV 500
VT+L P ++ DG ++R CFG GEA L R +Y +
Sbjct: 2236 GVTILDFPPVYLQQLAEHAERDGRP-PAVRVYCFG--GEAVPAASLRLAWEALRPVY--L 2290
Query: 501 IEYCGGTEIGGGFITGSLLQAQ-------SLAAFSTPAMGCKLFILGNDGCPIPQNVPGM 553
G TE +T L + + + + +IL D + PGM
Sbjct: 2291 FNGYGPTE---AVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLA---PGM 2344
Query: 554 -GELALSPLIFGASSTLLN--ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGR 610
GEL L G + LN + + S +G+ L R GD+ + G GR
Sbjct: 2345 AGELYLGGE--GLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGR 2402
Query: 611 ADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPP 670
D + + G ++ EIE A + V E + G +QL VV D+
Sbjct: 2403 IDHQVKIRGFRIELGEIEARLQAHPA-VREAVVVAQDGASG--KQLVAYVVPDDA--AED 2457
Query: 671 DLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK-QLAQLDQ 724
L +LR + + + P +H V L LP K+ R+ L K ++QL Q
Sbjct: 2458 LLAELRAWLAARLPAYMVP----AHWVVLERLPLNPNGKLDRKALPKPDVSQLRQ 2508
|
Length = 5163 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ T +EL V +A AL+ G+ G + I M V LA + G I V +
Sbjct: 41 NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFR 100
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP-LAIVIPAKGSSFSMKLR 327
EI+ + A + T+ + P+ + P L+ V+ A GSS
Sbjct: 101 LTPPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVAGGSS-----D 149
Query: 328 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK 372
D + + D L A V+ P ++ I+++SGTTG PK
Sbjct: 150 DSVLGYEDLLAE----AGPAHAPVDIPNDSPALIMYTSGTTGRPK 190
|
Length = 542 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 47/170 (27%), Positives = 65/170 (38%), Gaps = 23/170 (13%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSI 265
+S T EL A V VA AL LGL KG +A + NS +++LA AG + V +
Sbjct: 35 RSWTYAELDAAVNRVAAALLDLGLKKGDRVAA---LGHNSDAYALLWLACARAGAVHVPV 91
Query: 266 ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMK 325
E++ L S A+A L +A L V S +
Sbjct: 92 NFMLTGEELAYILDHSGARAFLVDP---------ALAPTAEAALALLPVDT-LILSLVLG 141
Query: 326 LRDGDISWLDFLERVRKLKENEFAAVEQPV---EAFTNILFSSGTTGEPK 372
R+ WLDF + E A + IL++SGT PK
Sbjct: 142 GREAPGGWLDFAD----WAEAGSVAEPDVELADDDLAQILYTSGTESLPK 187
|
Length = 523 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653
GD R G+ GR D+ + G +VS E+E + A V E A GVP P G
Sbjct: 401 GDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYAT-GLVAEAVAFGVPDPTLGQ 459
Query: 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPL-PSLPRTATNKVMR 712
IV+V D L + + +L P + V ++ + +LPR A K+ R
Sbjct: 460 ---AIVLVVTPPGGEELDRAALL----AECRARL-PNYMVPALIHVRQALPRNANGKIDR 511
Query: 713 RVLRKQ 718
+ L K+
Sbjct: 512 KALAKE 517
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 126/555 (22%), Positives = 194/555 (34%), Gaps = 116/555 (20%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ +T +EL +A+ +LGL +G +AI M N+ + + A +G +
Sbjct: 23 EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
E + + S A+A LI K D L P + D
Sbjct: 83 LTPAEAAYIVDDSGARA-----LITSAAKL-------DVARALLKQCPG-VRHRLVLDGD 129
Query: 329 GDIS-WLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD 387
G++ ++ + E V L A ++ + T++L+SSGTTG PK I P
Sbjct: 130 GELEGFVGYAEAVAGLPATPIA--DESLG--TDMLYSSGTTGRPKGI--KRPLP------ 177
Query: 388 AWCHMDIRKADIVAWPTNLGWMMGPWLVY---ASLLNGASIALYNGSPLGSG-------- 436
+ W +VY A L + A + G
Sbjct: 178 ---EQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQR-AVMLVIRLGGTVIVMEH 233
Query: 437 -----FAKFVQDAKVTMLGVVPSI-VRTWKSTNCI-DGYDWSSIR--------CFGSTGE 481
+ +++ VT +VP++ R K + D YD SS+ C E
Sbjct: 234 FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKE 293
Query: 482 ASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFST---PAMGCKLF 537
+D W + P+I EY TE G GF + + LA T G L
Sbjct: 294 QM-ID---W------WGPIIHEYYAATE-GLGFT--ACDSEEWLAHPGTVGRAMFG-DLH 339
Query: 538 ILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVF 597
IL +DG +P PG I+ Y + P++ + RH D
Sbjct: 340 ILDDDGAELPPGEPGT--------IWFEGGRPF------EYLND-PAKTAE--ARHPDGT 382
Query: 598 ERTSG--GYYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 649
T G GY G RA + GG+ + E E + V + A GVP
Sbjct: 383 WSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLL-ITHPKVADAAVFGVPNE 441
Query: 650 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHV-VP-----LPSLP 703
D G E++ VV D P L ++F ++S P LP
Sbjct: 442 DLG-EEVKAVVQPVDGVDPGPALAAELIAFCRQ---------RLSRQKCPRSIDFEDELP 491
Query: 704 RTATNKVMRRVLRKQ 718
R T K+ +R+LR +
Sbjct: 492 RLPTGKLYKRLLRDR 506
|
Length = 511 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 57/205 (27%), Positives = 85/205 (41%), Gaps = 34/205 (16%)
Query: 191 LDDIVIRWCDEG-----DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245
LD R+ D D GL T +E EV +A L ALG++KG + I P
Sbjct: 22 LDRTAARYPDREALVYRDQGL---RWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNV 78
Query: 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVI 305
V+ A G I+V+I ++ E+ L S KA+ G K ++
Sbjct: 79 PEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALI----AADGFKDSDYVAML 134
Query: 306 DAQAP-LAIVIPAKGSSFSM-KLR----------DGDISWLDFLERVRKLKENEFAAVE- 352
AP LA P + S + +LR G +++ + L R + + E AA +
Sbjct: 135 YELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQA 194
Query: 353 -----QPVEAFTNILFSSGTTGEPK 372
P+ NI ++SGTTG PK
Sbjct: 195 TLDPDDPI----NIQYTSGTTGFPK 215
|
Length = 559 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 42/183 (22%)
Query: 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVI 251
D + E +T +L+ + +A +++L L S I + M+ +
Sbjct: 17 DFPAYDYLGE--------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLAT 68
Query: 252 YLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPL 311
+L V AG+ + + S + I + ++K I + + IP+ + + +
Sbjct: 69 FLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEILGIPVITLDELKD-- 126
Query: 312 AIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTN--ILFSSGTTG 369
I A G+ + + V+ N I+F+SGTTG
Sbjct: 127 ---IFATGNPYDF---------------------------DHAVKGDDNYYIIFTSGTTG 156
Query: 370 EPK 372
+PK
Sbjct: 157 KPK 159
|
Length = 503 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653
GD+ G+ R R D + + G V EIE + + VLE AA+GVP G
Sbjct: 437 GDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVV-MLHPKVLEVAAVGVPSEVSG- 494
Query: 654 EQLTIVVVFKDSNYTPPDL-NQLRMSFNSAVQKKLNPLFKVSHVVPL-PSLPRTATNKVM 711
E + I VV KD + T +L R +KV +V LP++ K++
Sbjct: 495 EAVKIFVVKKDPSLTEEELITHCRRHLTG---------YKVPKLVEFRDELPKSNVGKIL 545
Query: 712 RRVLR-KQLAQLDQN 725
RR LR + A++D
Sbjct: 546 RRELRDEARAKVDNK 560
|
Length = 560 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 692 KVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723
V + LP+T + K++RR+LR D
Sbjct: 3 VPREVEFVDELPKTRSGKILRRLLRAIALGED 34
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+++T EL V +A L ALG+ G +AI V+ LAI+ AG + V I +
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63
Query: 269 FASLEISARLRISKAKAIFTQD 290
+ E++ L S A+ +F +D
Sbjct: 64 SSPEEVAYILNDSGARVVFVED 85
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 592 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651
GD+ G+ R D + + G V EIE + A+ VLE AA+GVP
Sbjct: 440 HTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVI-AMMPGVLEVAAVGVPDEKS 498
Query: 652 GPEQLTIVVVFKDSNYTPPDLN-QLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKV 710
G E + +V+V KD T D+ R + Q ++ K LP+T K+
Sbjct: 499 G-EIVKVVIVKKDPALTAEDVKAHARANLTGYKQPRIIEFRK--------ELPKTNVGKI 549
Query: 711 MRRVLR 716
+RR LR
Sbjct: 550 LRRELR 555
|
Length = 560 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 52/186 (27%), Positives = 70/186 (37%), Gaps = 21/186 (11%)
Query: 533 GCKLFILGNDGCPIPQNVPGMGELALSPLIFGASST---LLNANHYDVYFSGMPSRNGQI 589
G + IL DG P+P GEL +I G + L N F GQ
Sbjct: 280 GLRALILDEDGRPVPPG--EEGEL----VIAGPQVSPGYLNNPEKTAKAF---FQDEGQR 330
Query: 590 LRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 649
R GD+ G GR D + L G ++ EIE A+ V E + V P
Sbjct: 331 WYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRAL-PGVEEAVVLPV-PK 388
Query: 650 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNK 709
+L VV K+ D L+ ++K+L P V L SLP A K
Sbjct: 389 GEKVVRLVAFVVGKEG---ALDTKALK----KELKKRLPPYMIPRRFVYLDSLPLNANGK 441
Query: 710 VMRRVL 715
+ R+ L
Sbjct: 442 IDRKAL 447
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 19/178 (10%)
Query: 203 DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262
D P+ + ELRA V +A L A G+ +G +A+ +P + VV++LA G V
Sbjct: 31 DEDRPL---SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATV 87
Query: 263 VSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLA-------IVI 315
+++ + S E++ L +A+ + G K I ++ A P A V+
Sbjct: 88 IAVNTRYRSHEVAHILGRGRARWLVVWP----GFKGIDFAAILAAVPPDALPPLRAIAVV 143
Query: 316 PAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQ-PVEAFTNILFSSGTTGEPK 372
+ + + E AA FT +SGTT PK
Sbjct: 144 DDAADATPAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFT----TSGTTSGPK 197
|
Length = 540 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 609 GRADDTMNLGGIKVSSVEIERICNAVD----SNVLETAAIGVPPPDGGPEQLTIVVVFKD 664
GRA D + + G +IER+ V+ V AA GV E++ I V ++
Sbjct: 388 GRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRV---AACGVYDEKEQSEEVVIFVEYRQ 444
Query: 665 SNYTPPDLNQLRMSFNSAVQKKLNPLFK--VSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722
L+ +++ +N + HV+P+ S+P+T + K+ R L +Q
Sbjct: 445 ------SLDDF-TPLALKIKRHVNKKMGLNIDHVIPVRSIPKTTSGKIQRYKLAQQFLNG 497
Query: 723 D 723
D
Sbjct: 498 D 498
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
++T EL+ +A L ALG G +A+ + ++ LA + AG V + S
Sbjct: 15 DTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPS 74
Query: 269 FASLEISARLRISKAKAIFTQD 290
+ I+ L + A+
Sbjct: 75 QPAERIAKILEAAGPAALVADP 96
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 32/166 (19%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
K +T EL V VA L ALG+ KG +A+ M + +++ A+ G + V +
Sbjct: 26 KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTR 85
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
+ E+ +L ++ K + T D D +A L I K + M
Sbjct: 86 LSREELLWQLDDAEVKCLITDD---------------DFEAKLIPGISVKFAEL-MNGPK 129
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAI 374
+ + EF ++ I+++SGTTG+PK +
Sbjct: 130 EEAEI-----------QEEF-----DLDEVATIMYTSGTTGKPKGV 159
|
Length = 483 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 114/543 (20%), Positives = 216/543 (39%), Gaps = 75/543 (13%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
K++T E+ + A AL +LGL KG + + +P ++ L I+ AG + +
Sbjct: 54 KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPT 113
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
EI + + AK I T D K + L ++ + +
Sbjct: 114 ALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKIE---------------- 157
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEA-FTNILFSSGTTGEPKAIPWTNATPFKAAAD 387
G ++W + LE + + + E+ ++ + FSSGTTG K + T+ A+
Sbjct: 158 GAVNWKELLEAADRAGDT--SDNEEILQTDLCALPFSSGTTGISKGVMLTHRN---LVAN 212
Query: 388 AWCHMDIRKADIVAWPTNLGWMMGPW--------LVYASLLNGASIALYNGSPLGSGFAK 439
+ +++ LG + P+ + A+L N + + + L + F
Sbjct: 213 LCSSLFSVGPEMIGQVVTLGLI--PFFHIYGITGICCATLRNKGKVVVMSRFELRT-FLN 269
Query: 440 FVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK- 498
+ +V+ +VP I+ ++ +D S ++ A+ + L A +
Sbjct: 270 ALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPG 329
Query: 499 -PVIEYCGGTEIGGGFIT------GSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVP 551
V E G TE +T G + ++ F P + K FI + G +P+N P
Sbjct: 330 VQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVK-FIDPDTGRSLPKNTP 388
Query: 552 GMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHG-- 609
GEL + S + +Y+ + + GD+ GY G
Sbjct: 389 --GELCV-------RSQCVMQGYYNNKEETDRTIDEDGWLHTGDI------GYIDDDGDI 433
Query: 610 ----RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD--GGPEQLTIVVVFK 663
R + + G +V+ E+E I S +E AA+ VP PD G VV+
Sbjct: 434 FIVDRIKELIKYKGFQVAPAELEAILLTHPS--VEDAAV-VPLPDEEAGEIPAACVVINP 490
Query: 664 DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723
+ + D+ ++ N A KK+ +V V S+P++ + K+MRR+L++++ ++
Sbjct: 491 KAKESEEDILNF-VAANVAHYKKV----RVVQFV--DSIPKSLSGKIMRRLLKEKMLSIN 543
Query: 724 QNS 726
+ +
Sbjct: 544 KAN 546
|
Length = 546 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 62/273 (22%), Positives = 99/273 (36%), Gaps = 23/273 (8%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL-AIVLAGYIVVSIAD 267
+ ++ EL +A L LG+ G + + +P NV I A++ G V
Sbjct: 52 RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLP-NVAEFYITFFALLRLGVAPVLALP 110
Query: 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLR 327
S + E+ A +A LI+ S YR P A + AK + +
Sbjct: 111 SHRASELGAFASQIEAAL-----LIVARQHSGFDYR------PFARELVAKHPTLRHVIV 159
Query: 328 DGDISWLDFLE-RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT---PFK 383
G+ LE + A S GTTG PK IP T+ +
Sbjct: 160 AGEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVR 219
Query: 384 AAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKF--V 441
A+A+ C D + + A P + + L G ++ L +P S F +
Sbjct: 220 ASAEI-CGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVL---APDPSPELCFPLI 275
Query: 442 QDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 474
+ VT+ +VP + W + D SS+R
Sbjct: 276 ERHGVTVTALVPPLASLWLQAAEWERADLSSLR 308
|
Length = 542 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 60/267 (22%), Positives = 101/267 (37%), Gaps = 60/267 (22%)
Query: 201 EGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSV---VIYLAIVL 257
E GG + +T E +V +A AL LGL + I ++ NS+ ++ LA +
Sbjct: 16 ERRGGGEWRRVTYAEALRQVRAIAQALLDLGLSAERPLMI---LSGNSIEHALLALAAMY 72
Query: 258 AGYIVVSIADSFASL-EISARLR----ISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLA 312
AG V ++ +++ L + A+LR + A+F +D R + A
Sbjct: 73 AGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAED-------GAAFARALAALGLAG 125
Query: 313 I-VIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFT-----NILFSSG 366
+ V+ +G+ I++ L AAV+ A LF+SG
Sbjct: 126 VPVVAVRGAP-----GGPAIAFAALLA------TPPTAAVDAAFAAVGPDTVAKYLFTSG 174
Query: 367 TTGEPKAIPWT------NATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW------- 413
+TG PKA+ T N A W + P + W+ PW
Sbjct: 175 STGLPKAVINTHRMLCANQ---AMIAQCWPFLTEEP------PVLVDWL--PWNHTFGGN 223
Query: 414 -LVYASLLNGASIALYNGSPLGSGFAK 439
L NG ++ + +G P+ F +
Sbjct: 224 HNFNMVLYNGGTLYIDDGKPVPGLFEE 250
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 82/393 (20%), Positives = 138/393 (35%), Gaps = 82/393 (20%)
Query: 360 NILFSSGTTGEPKAIPWTNATPFKAA---ADAWCH---MDIRKADIVAWPTNLGWMMGP- 412
+L++ GTTG PK + W F+ D ++ + A ++
Sbjct: 7 YMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACP 66
Query: 413 -------WLVYASLLNGASIALYNGSPLGSGFAKF--------VQDAKVTMLGVV----- 452
WL ++L G ++ L KF V+ +V L +V
Sbjct: 67 LMHGAGQWLALSALFAGGTVVLLPDD-------KFDPDRVWRTVEKHRVNTLVIVGDAFA 119
Query: 453 -PSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV---DEYLWLMGRALYKPVIEYCGGTE 508
P ++ ++ YD SS+R S+G + L L+ +++ G +E
Sbjct: 120 RP-LLEALEAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLA---LVDALGASE 172
Query: 509 IGGGFITGSLLQAQSLA-AFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLI-FGAS 566
GGG GS + A A +G +L DG +P +G +A + G
Sbjct: 173 TGGG---GSSVSRAGGASATGKFELGPDTVVLDEDGSEVPPGSGEVGWIARGGRVPLG-- 227
Query: 567 STLLNANHYDVYFSGMPSRNGQILRR--------HGDVFERTSGGYYRAHGRADDTMNLG 618
Y+ P + + R GD + G GR +N G
Sbjct: 228 -----------YY-KDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTG 275
Query: 619 GIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMS 678
G KV E+E A V + +GVP G +V V + DL +LR
Sbjct: 276 GEKVFPEEVEEALKAHPD-VADALVVGVPDERWGQR---VVAVVQLRAGAGLDLAELR-- 329
Query: 679 FNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKV 710
++ L +K+ +V + ++PR + K
Sbjct: 330 --DHCRQHLAG-YKLPRAIVVVDTVPRAPSGKA 359
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 27/217 (12%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVV-IYLAIVLAGYIVVSIADSFA 270
T +E +A AL+ LG+ KG +A+ P N +++ + + +AG ++V +
Sbjct: 31 TYRETYDRCRRLASALSKLGIGKGDVVAVLAP-NTPAMLEAHFGVPMAGAVLVPLNTRLD 89
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKS-IPLYRVIDAQAPLAIVIPAKGSSFSMKLRDG 329
+ +I+ L S+AK +F D+ + L A +I + S
Sbjct: 90 ADDIAFILNHSEAKVLFV-------DQEFLSLAEEALALLSTKEIIDTEIIVISPA--AE 140
Query: 330 DISWLDFLERVRKLKENEFAAVEQPV----EAFTNILFSSGTTGEPKAIPWTNATPFKAA 385
D D+ + L + + P + + + ++SGTTG PK + +T+ + A
Sbjct: 141 DSEEGDYED---LLAGGDPDPLPIPPDDEWDPIS-LNYTSGTTGNPKGVVYTHRGAYLNA 196
Query: 386 ADAWCHMDIRKADIVAW--P---TNLGWMMGPWLVYA 417
+ + W P N GW PW + A
Sbjct: 197 LGNVIEWGMPDRPVYLWTLPMFHCN-GW-CFPWAITA 231
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 207 PVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIA 266
+S+T EL A +A AL ALGL G +A+ P + VV+YLAI AG + V +
Sbjct: 8 GGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLN 67
Query: 267 DSFASLEISARLRISKAKAIFTQDLII 293
S+ + E++ L S+ + LII
Sbjct: 68 PSYPAAELAYILSDSQPSLLVDPALII 94
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 26/166 (15%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+T ELRA V VA L+A G+ +A+ P +V++V+ LA+ G + +
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSM--KLRD 328
EI+ +LI RG+ + + A A V+ A S S L
Sbjct: 89 PAEIA--------------ELIKRGE----MTAAV--IAVDAQVMDAIFQSGSGVRVLAL 128
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAI 374
GD+ L E E+ EQP AF + ++SGTTG PK
Sbjct: 129 GDLVGLGEPESAGPPIEDPPREPEQP--AF--VFYTSGTTGLPKGA 170
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 603 GYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVF 662
G GRADD ++ GG+ V +E + V + A G+P G +V
Sbjct: 247 GVLTVLGRADDAISTGGLTVLPQVVEAALATHPA-VADCAVFGLPDDRLGQR---VVAAV 302
Query: 663 KDSNYTPPDLNQLRMSFNSAVQKKLNP--LFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 720
P L LR + V + L+ + HVV LPR KV RR L ++ A
Sbjct: 303 VGDGGPAPTLEALR----AHVARTLDRTAAPRELHVVD--ELPRRGIGKVDRRALVRRFA 356
Query: 721 Q 721
Sbjct: 357 G 357
|
Length = 358 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 19/153 (12%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISK 282
VA L+ LG+ +G + + +P V+ +L G + + + EI+ + + S
Sbjct: 63 VAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASG 122
Query: 283 AKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRK 342
AK I TQ + DK + + + L +++ D
Sbjct: 123 AKLIITQSCYV--DK------LKGLAEDDGVTVVTIDDPPEGCLHFSELTQAD------- 167
Query: 343 LKENEFAAVE-QPVEAFTNILFSSGTTGEPKAI 374
ENE VE P + + +SSGTTG PK +
Sbjct: 168 --ENELPEVEISPDDVVA-LPYSSGTTGLPKGV 197
|
Length = 537 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 5/129 (3%)
Query: 592 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651
R GDV T G+ H RA D + GG + S ++E A V+E A IG P
Sbjct: 433 RTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPE-VVECAVIGYPDDKW 491
Query: 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 711
G L + V+ T +LR + + P + + + +T+ K
Sbjct: 492 GERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLP----EYWTFVDEIDKTSVGKFD 547
Query: 712 RRVLRKQLA 720
++ LR+ LA
Sbjct: 548 KKDLRQHLA 556
|
Length = 576 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 51/209 (24%), Positives = 76/209 (36%), Gaps = 37/209 (17%)
Query: 189 RSLDDIVIRWCDE----------GDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAI 238
R L D ++ W E G G + +T E V +A AL GL +
Sbjct: 39 RRLTDRLVHWAQEAPDRVFLAERGADG-GWRRLTYAEALERVRAIAQALLDRGLSAERPL 97
Query: 239 AIDMPMNVNSV---VIYLAIVLAG--YIVVSIADSFASLEISARLR----ISKAKAIFTQ 289
I NS+ ++ LA + AG Y VS A S S + +LR + +F
Sbjct: 98 MILSG---NSIEHALLALAAMYAGVPYAPVSPAYSLVSQDF-GKLRHVLELLTPGLVFAD 153
Query: 290 DLIIRGDKSIPLYRVIDAQAPLAI-VIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEF 348
D G R + A P + V+ +G+ + L +
Sbjct: 154 D----GA---AFARALAAVVPADVEVVAVRGAVPG----RAATPFAALLATPPTAAVDAA 202
Query: 349 AAVEQPVEAFTNILFSSGTTGEPKAIPWT 377
A P + LF+SG+TG PKA+ T
Sbjct: 203 HAAVGP-DTIAKFLFTSGSTGLPKAVINT 230
|
Length = 614 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 60/237 (25%), Positives = 92/237 (38%), Gaps = 46/237 (19%)
Query: 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT-QDLI---- 292
I I MP + + + Y A +L+G I V I S E++A + + T + L+
Sbjct: 70 IGIMMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLA 129
Query: 293 -IRGDKSIPLYRVIDAQAPLAIVIPA---KGSSFSMKLRDGDISWLDFLERVRKLKENEF 348
G+ DA+ P +++ K SF K R G + F +R F
Sbjct: 130 QTHGE---------DAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFEWLMRW-----F 175
Query: 349 AAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGW 408
++ E ILF+SGT PK +P T+A ++ D+
Sbjct: 176 GVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDV--------- 226
Query: 409 MMG---PWLVYA-------SLLNGASIAL-YNGSPL-GSGFAKFVQDAKVTMLGVVP 453
MM P+ Y LL+G + YN PL + + +AKVT LG P
Sbjct: 227 MMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYN--PLYPKKIVEMIDEAKVTFLGSTP 281
|
Length = 539 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 592 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651
R GDV GY + R D + + G V EIE + A VLE AA+GVP
Sbjct: 438 RTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVV-ASHPGVLEVAAVGVPDEHS 496
Query: 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 711
G E + + VV KD T D+ +++L + V LP+T K++
Sbjct: 497 G-EAVKLFVVKKDPALTEEDVKAF-------CKERLTNYKRPKFVEFRTELPKTNVGKIL 548
Query: 712 RRVLR 716
RR LR
Sbjct: 549 RRELR 553
|
Length = 557 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 13/205 (6%)
Query: 176 VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGL-PVKSMTLKELRAEVWLVAYALNALGLDK 234
+ A + S + ++ D+ ++ W DG + P T KE+ EV + AL A G +
Sbjct: 41 ITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEP 100
Query: 235 GSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIR 294
GS + I +V A I V + D+ + + ++ +F QD I+
Sbjct: 101 GSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK 160
Query: 295 G-----DKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 349
KS + I + + K S +K SW+DFL ++
Sbjct: 161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKT----YSWIDFLHMGKENPSETNP 216
Query: 350 AVEQPVEAFTNILFSSGTTGEPKAI 374
+P++ T I+++SGT+G+PK +
Sbjct: 217 P--KPLDICT-IMYTSGTSGDPKGV 238
|
Length = 660 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 143/587 (24%), Positives = 216/587 (36%), Gaps = 125/587 (21%)
Query: 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAI 240
+ L ++R D I + W D +S T +E+ A V +A AL A G+ KG I +
Sbjct: 11 HFLRQAARRFPDRIALVWGD--------RSWTWREIDARVDALAAALAARGVRKGDRILV 62
Query: 241 DMPMNVNSVVIYLAIVLAGYIVV-----SIADSFASLEISARLRISKAKAIFTQDLIIRG 295
A G + V D A L ++ R A F +
Sbjct: 63 HSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHA---- 118
Query: 296 DKSIPLYRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEF--AAVE 352
+ A +P L V+ G+ LD+ V + AAV+
Sbjct: 119 -------AAVRAASPDLTHVVAIGGARAG----------LDYEALVARHLGARVANAAVD 161
Query: 353 --QPVEAFTNILFSSGTTGEPKAIPWTNAT-PFKAA---ADAWCHMDIRKADIVAWPTNL 406
P F F+SGTTG PKA T+ F AD + A +V P +
Sbjct: 162 HDDPCWFF----FTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSH 217
Query: 407 GWMMGPWLVYASLLN---GASIALYNGSPL-GSGFAKFVQDAKVTMLGVVPSIVRTWKST 462
G G ++ L GA+ L + V+ +VT L VP+I++
Sbjct: 218 G--AG---IHQ-LCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEH 271
Query: 463 NCIDGYDWSSIRCFGSTGEASNVDEYLWLMG---------RALYK--PVI-EYCGGTEIG 510
+D YD SS+R Y+ G RAL K V+ +Y G E+
Sbjct: 272 PAVDRYDHSSLR-------------YVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVT 318
Query: 511 GGFITGSLLQAQSLAAFSTPAM----------GCKLFILGNDGCPIPQNVPG-MGEL-AL 558
G IT +L A P G ++ I ++G +P PG GE+ +
Sbjct: 319 GN-IT--VLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELP---PGETGEICVI 372
Query: 559 SPLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRADDT 614
P +F A +Y+ P N + R R GD+ + G+ GRA D
Sbjct: 373 GPAVF--------AGYYN-----NPEANAKAFRDGWFRTGDLGHLDARGFLYITGRASDM 419
Query: 615 MNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQ 674
GG V EIE + V E A +GVP P G E V V +D P D +
Sbjct: 420 YISGGSNVYPREIEEKLLTHPA-VSEVAVLGVPDPVWG-EVGVAVCVARDG--APVDEAE 475
Query: 675 LRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721
L + V + P +LP++ K+ ++++R++L +
Sbjct: 476 LLAWLDGKVARYKLP----KRFFFWDALPKSGYGKITKKMVREELEE 518
|
Length = 528 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653
GDV G+ R+ D + GG +SSVE+E + VLETA + +P P G
Sbjct: 425 GDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKY-PKVLETAVVAMPHPTWGE 483
Query: 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQ--KKLNPLFKVSH-VVPLPSLPRTATNKV 710
VV+ K +++L ++ ++ P F VV L LP+ K+
Sbjct: 484 TPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKI 543
Query: 711 MRRVLR 716
++ LR
Sbjct: 544 LKPKLR 549
|
Length = 579 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 61/222 (27%), Positives = 86/222 (38%), Gaps = 37/222 (16%)
Query: 505 GGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGM----GELALSP 560
G TE+G G + + P GC + IL + P+ V G GELA +
Sbjct: 325 GSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTR 384
Query: 561 LIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGI 620
G +++ GM S GD+ + G GR DD + GG
Sbjct: 385 YTDGGGKAVVD---------GMTST--------GDMGYLDNAGRLFIVGREDDMIISGGE 427
Query: 621 KVSSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMS 678
V +E NA+ ++ V + A IGVP G VV+ S D QLR
Sbjct: 428 NVYPRAVE---NALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGV---DAAQLRDY 481
Query: 679 FNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 720
V + P + ++V S+PR T K VLRK+L
Sbjct: 482 LKDRVSRFEQP--RDINIVS--SIPRNPTGK----VLRKELP 515
|
Length = 516 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 210 SMTLKELRAEVWLVAYAL-NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
S++ EL+ V +A L + +G+ +G + + +P +V VI+LA++ G IV ++ S
Sbjct: 66 SISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPS 125
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
+ EI R+ FT + L +PL +P G +
Sbjct: 126 SSLGEIKKRVVDCSVGLAFTSP-----ENVEKL-------SPLG--VPVIGVPENYDFDS 171
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPV---EAFTNILFSSGTTGEPKAIPWTN 378
I + F +L + +F V +PV + I++SSGTTG K + T+
Sbjct: 172 KRIEFPKF----YELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTH 220
|
Length = 560 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 63/269 (23%), Positives = 102/269 (37%), Gaps = 57/269 (21%)
Query: 201 EGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSV---VIYLAIVL 257
E G + +T E + V +A AL LGLD G + I ++ NS+ ++ LA +
Sbjct: 72 EPGHG-QWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMI---LSGNSIEHALMTLAAMQ 127
Query: 258 AGYIV--VSIADSFASLEISARLR----ISKAKAIFTQDLIIRGDKSIPLY----RVIDA 307
AG VS A S S + A+L+ + K + +F Q + +D
Sbjct: 128 AGVPAAPVSPAYSLMSHDH-AKLKHLFDLVKPRVVFAQSG--------APFARALAALDL 178
Query: 308 QAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFT-----NIL 362
+ + G I+ + F + AAV + A T L
Sbjct: 179 LDVTVVHVTGPG---------EGIASIAFADLAATPPT---AAVAAAIAAITPDTVAKYL 226
Query: 363 FSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAW-PTNLGWMMGPW-------- 413
F+SG+TG PKA+ T A+ +R + P +L WM PW
Sbjct: 227 FTSGSTGMPKAVINTQRM---MCANIAMQEQLRPREPDPPPPVSLDWM--PWNHTMGGNA 281
Query: 414 LVYASLLNGASIALYNGSPLGSGFAKFVQ 442
L G ++ + +G PL F + ++
Sbjct: 282 NFNGLLWGGGTLYIDDGKPLPGMFEETIR 310
|
Length = 624 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 18/171 (10%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSIAD 267
+T K+ A A LGL++ ++ I + NS + + + AG I V I
Sbjct: 9 LTYKQYYEACRQAAKAFLKLGLERFHSVGI---LGFNSPEWFIAAVGAIFAGGIAVGIYT 65
Query: 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP-LAIVIPAKGSSFSMKL 326
+ + S+A + + K + I Q P L +I + K
Sbjct: 66 TNSPEACQYVAETSEANILVVDN-----AKQLQKILAIQDQLPHLKAIIQYREP-LKEK- 118
Query: 327 RDGDISWLDFLERVRKLKENEFAAVE---QPVEAFTNILFSSGTTGEPKAI 374
SW +F+E R + + + A+ +P + T ++++SGTTG PK +
Sbjct: 119 EPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCT-LIYTSGTTGMPKGV 168
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 728 | |||
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.97 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.95 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.92 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.84 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.71 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.57 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.3 | |
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 99.0 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.82 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.39 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.75 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.66 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.51 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.48 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 93.62 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 82.4 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 82.17 |
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-101 Score=888.32 Aligned_cols=718 Identities=70% Similarity=1.171 Sum_probs=616.4
Q ss_pred cccccccccChHHHHHcCCChHHHHHHHHHHHHHHHhcCCCChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC---
Q 004825 4 YNYKALDCITSYDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD--- 80 (728)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~--- 80 (728)
.-+|.+|-|+..||++.|+..++++.|.++|+++..++..+....+-..--+-|+|..+.+.||+||+-+.-++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (728)
T PLN03052 3 MAGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRAGASPPSIWRRISQSLLTPSHPFALHQLMYYSCYKNWDSDTLG 82 (728)
T ss_pred cccCChhhcCHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhcCCCCCccHHHHhhhhcccCCCccccC
Confidence 35789999999999999999999999999999999988768888888888889999999999999999999988333
Q ss_pred -CCCccCChhhhhhccHHHHHHHhccccccCCCCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCC
Q 004825 81 -PPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNG 159 (728)
Q Consensus 81 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 159 (728)
.++|.|+++...+++|..+++..+.......|...+.+|+.|+++|+++++.||.++++.+.+.|.+++.++++...
T Consensus 83 ~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~-- 160 (728)
T PLN03052 83 PPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSD-- 160 (728)
T ss_pred CCCCCCCChhhcccchHHHHHHHhhhhhhHHhhCCChhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCceeecCCC--
Confidence 58999999988889999998887554444447778899999999999999999999999998899999999986521
Q ss_pred CCCCCCCCCCCCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004825 160 ENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIA 239 (728)
Q Consensus 160 ~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Va 239 (728)
...+..+||+++..|.+++||++++.++|+++|+++.++++..+..+++||+||.++++++|++|++.|+++||+|+
T Consensus 161 ---~~~~~~~wf~g~~ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVa 237 (728)
T PLN03052 161 ---ESNPGGQWLPGAVLNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIA 237 (728)
T ss_pred ---CCCCCCEECCCCEeEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 12456789999999999999999877899999999987643334467899999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCCcEEEEcCC
Q 004825 240 IDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAPLAIVIPAK 318 (728)
Q Consensus 240 i~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~ 318 (728)
|+++|++++++++|||+++|++++|++|+++.+++.+++++++|+++|+++...+.++.++.. .+.+.....+++++..
T Consensus 238 i~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~ 317 (728)
T PLN03052 238 IDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPAD 317 (728)
T ss_pred EEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999877777777765 4444444455555543
Q ss_pred CCCcccccCCCCcCHHHHHHhhhccc-cCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCC
Q 004825 319 GSSFSMKLRDGDISWLDFLERVRKLK-ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKA 397 (728)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (728)
.............+|++++....... +....+...++++++||+|||||||+||||+++|++++..+......++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~ 397 (728)
T PLN03052 318 GKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKG 397 (728)
T ss_pred CCccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCC
Confidence 21111111123566887765432100 11122233467999999999999999999999999988877777677899999
Q ss_pred CEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEE
Q 004825 398 DIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 477 (728)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~ 477 (728)
|+++++++++|+++.+.++++|+.|++++++++.+++..+++++++++||++.++|++++.|.+.......++++||.++
T Consensus 398 d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~ 477 (728)
T PLN03052 398 DIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFG 477 (728)
T ss_pred cEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEE
Confidence 99999999999999988999999999999999877778899999999999999999999999877545567889999999
Q ss_pred eecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEE
Q 004825 478 STGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELA 557 (728)
Q Consensus 478 ~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~ 557 (728)
+|||+++++...++.+.++..+++|.||+||+++++....+..+...+++|.|++|++++|+|++|+++|.|++++|||+
T Consensus 478 s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~ 557 (728)
T PLN03052 478 STGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELA 557 (728)
T ss_pred ecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEE
Confidence 99999999998888877665689999999999876555444444556789999999999999999999999875579999
Q ss_pred EeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCC
Q 004825 558 LSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN 637 (728)
Q Consensus 558 v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~ 637 (728)
+.+.+++...+|++++.+..||..+|..+|.+||+|||++++++||+++|+||+||+||++|+||++.|||++|+..||+
T Consensus 558 v~~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~ 637 (728)
T PLN03052 558 LFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADES 637 (728)
T ss_pred EeCCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCC
Confidence 98888777777788888888999888888889999999999999999999999999999999999999999999547999
Q ss_pred eeeeEEEeecCCCCCceEEEEEEEec--CCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHH
Q 004825 638 VLETAAIGVPPPDGGPEQLTIVVVFK--DSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 715 (728)
Q Consensus 638 V~~~~Vv~~~~~~~g~~~l~a~vv~~--~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L 715 (728)
|.|++|++++++..|++.+++||+++ + +. ..+.++|+++|+++|+++|+++++|..|+++++||+|+|||++|+.|
T Consensus 638 V~eaaVvg~~d~~~g~e~~~afVvl~~~~-g~-~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~L 715 (728)
T PLN03052 638 VLETAAIGVPPPGGGPEQLVIAAVLKDPP-GS-NPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVL 715 (728)
T ss_pred cceEEEEeeecCCCCcEEEEEEEEEecCC-CC-CCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHH
Confidence 99999999998766558999999987 4 44 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCC
Q 004825 716 RKQLAQLDQNSKL 728 (728)
Q Consensus 716 ~~~~~~~~~~~~l 728 (728)
++++.+..++|||
T Consensus 716 r~~~~~~~~~~~~ 728 (728)
T PLN03052 716 RQQLAQELSRSKL 728 (728)
T ss_pred HHHHHhhhhccCC
Confidence 9999997779986
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-85 Score=707.93 Aligned_cols=515 Identities=29% Similarity=0.471 Sum_probs=446.8
Q ss_pred CCCCCCcchHhhhhcccccC-CCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCH
Q 004825 169 QWLPGAFVNPAKNCLSVNSK-RSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNV 246 (728)
Q Consensus 169 ~w~~~~~~~~~~~~l~~~~~-~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~ 246 (728)
+||.++..|.+++|++++.. ..+|++|+++.++.+ + .+++||+||.++++++|+.|++ .|+ +||||+|+||+++
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~~~~~~~~aii~~~e~~--~-~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~p 76 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFDGEDG--L-FRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSP 76 (528)
T ss_pred CCcCCceeechhhhhhhhhhccCCCceEEEEEcCCC--C-ceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCH
Confidence 59999999999999999985 457999999997621 1 2699999999999999999997 578 9999999999999
Q ss_pred HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCccccc
Q 004825 247 NSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKL 326 (728)
Q Consensus 247 ~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 326 (728)
+.+++||||+|+||+++|+.+.++++.+++++++++++++|+++...++++.++....++.....++++....
T Consensus 77 e~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~------- 149 (528)
T COG0365 77 EAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG------- 149 (528)
T ss_pred HHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc-------
Confidence 9999999999999999999999999999999999999999999999999888887743333222244444322
Q ss_pred CCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHH-HHhcCCCCCCEEEecCC
Q 004825 327 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA-WCHMDIRKADIVAWPTN 405 (728)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~-~~~~~~~~~d~~l~~~~ 405 (728)
.+|.++.+.... ..+..+..++|+++|+|||||||+||||+|+|++++...... ...+.+.++|++++.++
T Consensus 150 ----~~~~~~~~~~~~----~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad 221 (528)
T COG0365 150 ----LWYDEAVEKASE----KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSD 221 (528)
T ss_pred ----ccHHHHhhccCC----CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 667776665432 344455889999999999999999999999999766555444 45688889999999999
Q ss_pred cchhhhHH-HHHHHhhhCcEEEEeCCCCC--cchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCC
Q 004825 406 LGWMMGPW-LVYASLLNGASIALYNGSPL--GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEA 482 (728)
Q Consensus 406 ~~~~~~~~-~~~~~L~~G~~lvl~~~~~~--~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~ 482 (728)
++|.++.+ .++++|.+|++++++++.++ +.+++++|++++||+++++|+.+++|++....+..++++||.+.+.||+
T Consensus 222 ~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEP 301 (528)
T COG0365 222 PGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEP 301 (528)
T ss_pred chhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCC
Confidence 99999996 59999999999999988776 7889999999999999999999999999876677889999999999999
Q ss_pred CCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccc
Q 004825 483 SNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLI 562 (728)
Q Consensus 483 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~ 562 (728)
|+++.++|+.+.++ +++.+.||+||++.++....+ +...++.|+|+||+++.|+|++|+++++|+ |+|+|....
T Consensus 302 Lnpe~~~w~~~~~g-~~i~d~~gqTEtg~~~~~~~~--~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~---G~Lvi~~~~ 375 (528)
T COG0365 302 LNPEAFEWFYSALG-VWILDIYGQTETGMGFIAGRP--PVKNGSSGLPLPGYAVRRVDDEGNPVPPGV---GELVVRLPW 375 (528)
T ss_pred CCHHHHHHHHHHhC-CCEeccccccccCccccCCCC--CcCCCCCCCCCCCceeEEECCCCCcCCCCc---eEEEEeCCC
Confidence 99999999999886 999999999999976666555 344555599999999999999999999987 999997665
Q ss_pred cCCCccccCc-cccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeee
Q 004825 563 FGASSTLLNA-NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLET 641 (728)
Q Consensus 563 ~~~~~~~~~~-~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~ 641 (728)
.+...+|+++ +.+.+.|.. . ||.|||.+++|+||+++|+||.||+||+.|+||.+.|||++|. +||.|.||
T Consensus 376 p~~~~~~w~d~er~~~~y~~-----~--~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~-~hP~VaEa 447 (528)
T COG0365 376 PGMALTYWNDPERYKEAYFG-----R--WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLL-AHPAVAEA 447 (528)
T ss_pred chhhhhhhCCHHHHHHHHhh-----c--eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHH-hCcceeee
Confidence 5555555554 444333321 1 9999999999999999999999999999999999999999996 99999999
Q ss_pred EEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 642 AAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 642 ~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+||+++|+..| +.++|||++++ +. ..+ +|+++|++++++.+.++++|+.|.++++||+|.||||.|+.|++.+.+
T Consensus 448 AvVg~pd~~kg-~~v~afVvL~~-g~-~~~--~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 448 AVVGVPDPGKG-QIVLAFVVLAA-GV-EPN--ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK 522 (528)
T ss_pred EEEeccCCCCC-cEEEEEEEecC-CC-ChH--HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence 99999999998 88999999998 76 444 999999999999999999999999999999999999999999999874
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-86 Score=882.98 Aligned_cols=650 Identities=19% Similarity=0.211 Sum_probs=532.7
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC--CC-Ccc------
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD--PP-AWI------ 85 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~--~~-~~~------ 85 (728)
.+++|+..+.+.+|.++|++++++.++ +||++||++|++.|++.|+.+++|+ ||++|++.+. .. ...
T Consensus 1406 tlplR~~~~~~~t~~~~l~~v~~~~~~a~~hq~~p~~~i~~~l~~~r~~~~~pL--Fq~~~~~~~~~~~~~~~~~~~~~~ 1483 (3956)
T PRK12467 1406 TQVLRAEVDGQASFQQLLQQVKQAALEAQAHQDLPFEQLVEALQPERSLSHSPL--FQVMFNHQRDDHQAQAQLPGLSVE 1483 (3956)
T ss_pred eeEEEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHHhcccccCCCCCc--eeEEEEeecccccccccCCCceeE
Confidence 467888889999999999999998877 9999999999999999999999999 9999987221 00 111
Q ss_pred --CChhhhhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCC
Q 004825 86 --PDPEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENH 162 (728)
Q Consensus 86 --~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (728)
......++|||++.+.+.++++...+ |++ ++|++.++++|.++|..+|+++. +.|+..+...++..++
T Consensus 1484 ~~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~----~~p~~~~~~l~~~~~~ 1554 (3956)
T PRK12467 1484 SLSWESQTAQFDLTLDTYESSEGLQASLTYAT-----DLFEASTIERLAGHWLNLLQGLV----ADPERRLGELDLLDEA 1554 (3956)
T ss_pred eeecCCcccccceEEEEEecCCeEEEEEEEeC-----CcCCHHHHHHHHHHHHHHHHHHh----hCccCceeeccccchH
Confidence 11124578899998877777888888 999 99999999999999999999984 4455555554443333
Q ss_pred CC-CCCCCCCCCCcc----hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCE
Q 004825 163 LS-NPGGQWLPGAFV----NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSA 237 (728)
Q Consensus 163 ~~-~~~~~w~~~~~~----~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 237 (728)
+. .....|+.+... ....++|.++++++|+++|+++.+. ++||+||+++++++|++|+++|+++|++
T Consensus 1555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~ 1626 (3956)
T PRK12467 1555 ERRQILEGWNATHTGYPLARLVHQLIEDQAAATPEAVALVFGEQ--------ELTYGELNRRANRLAHRLIALGVGPEVL 1626 (3956)
T ss_pred HhhhhHHhhcCCccCCCccccHHHHHHHHHHhCCCCeEEEeCCc--------EEeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 33 334457654332 2456788889999999999999877 9999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcC
Q 004825 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPA 317 (728)
Q Consensus 238 Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 317 (728)
|+|+++||+++++++|||+|+|++|+||||.+|.+|+.+++++++++++|++......... ......+.++.
T Consensus 1627 V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~ 1698 (3956)
T PRK12467 1627 VGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPL--------PDGLRSLVLDQ 1698 (3956)
T ss_pred EEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCcc--------ccCCcEEEecc
Confidence 9999999999999999999999999999999999999999999999999998754211100 00111222211
Q ss_pred CCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCC
Q 004825 318 KGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKA 397 (728)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (728)
.. .+ ... .....+.....++++|||+|||||||+||||+++|+++++.+.+....++++++
T Consensus 1699 ~~------------~~---~~~----~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~ 1759 (3956)
T PRK12467 1699 ED------------DW---LEG----YSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAA 1759 (3956)
T ss_pred cc------------ch---hcc----CCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcc
Confidence 10 00 000 011112234567999999999999999999999999999999999899999999
Q ss_pred CEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeE
Q 004825 398 DIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRC 475 (728)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~ 475 (728)
|++++++|++||++++++|.+|+.|+++++++.. .++..+++.|++++||++.++|++++.|.+... ....+++||.
T Consensus 1760 d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~ 1838 (3956)
T PRK12467 1760 DVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRR 1838 (3956)
T ss_pred cEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceE
Confidence 9999999999999999999999999999998643 367889999999999999999999999987422 2345789999
Q ss_pred EEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcc----cccccccccCCCCCceEEEEcCCCCccCCCCC
Q 004825 476 FGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVP 551 (728)
Q Consensus 476 i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~ 551 (728)
+++|||+++++..+++.+.+++..++|.||+||+++.++..... ......++|+|++|++++|+|++++++|.|++
T Consensus 1839 v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~ 1918 (3956)
T PRK12467 1839 VVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVA 1918 (3956)
T ss_pred EEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCc
Confidence 99999999999999998888778899999999999766543321 11235689999999999999999999999987
Q ss_pred ceeEEEEeccccCCCccccCccccccccccCCCC-CCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHH
Q 004825 552 GMGELALSPLIFGASSTLLNANHYDVYFSGMPSR-NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERI 630 (728)
Q Consensus 552 giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~-~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~ 630 (728)
|||+|++..+..+ |+++++.|+++|+.+|+. +|.|||+|||+|||++||.|+|+||+|+|||++|+||+|+|||++
T Consensus 1919 --GEl~i~G~~v~~G-Yl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~ 1995 (3956)
T PRK12467 1919 --GELYLGGVGLARG-YLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEAR 1995 (3956)
T ss_pred --eEEEecccccccc-ccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHH
Confidence 9999977766543 467889999999999975 478999999999999999999999999999999999999999999
Q ss_pred HhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCC---CCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCC
Q 004825 631 CNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP---PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTAT 707 (728)
Q Consensus 631 l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~---~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~ 707 (728)
|. .||+|.+|+|++.+ ...+ ++++||++... +... .......+.++++++++||.||+|..|+.+++||+|+|
T Consensus 1996 l~-~~p~V~~a~vv~~~-~~~~-~~lva~vv~~~-~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~ 2071 (3956)
T PRK12467 1996 LR-EQGGVREAVVIAQD-GANG-KQLVAYVVPTD-PGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPN 2071 (3956)
T ss_pred HH-hCCCcceEEEEEec-CCCC-cEEEEEEEecC-cccccccccccccHHHHHHHHHhhCchhhCchhhhhhhcCCCCCC
Confidence 95 99999999999876 3334 79999999865 3200 11122455677889999999999999999999999999
Q ss_pred CchhHHHHHHHHH
Q 004825 708 NKVMRRVLRKQLA 720 (728)
Q Consensus 708 GKvdR~~L~~~~~ 720 (728)
||+||++|++...
T Consensus 2072 GKidr~~L~~~~~ 2084 (3956)
T PRK12467 2072 GKLDRKALPAPDA 2084 (3956)
T ss_pred CCcchhhCCCCcc
Confidence 9999999987543
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-82 Score=729.55 Aligned_cols=584 Identities=21% Similarity=0.279 Sum_probs=470.9
Q ss_pred CCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCC--CCCC
Q 004825 116 ISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKR--SLDD 193 (728)
Q Consensus 116 ~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~--~pd~ 193 (728)
+.+|+.++++|+++++.||.++++.+ +.|.+++.++++.. ....+||+++..|.++++|+++++. +|++
T Consensus 7 ~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~--------~~~~~wf~~~~~n~~~~~l~~~~~~~~~~~~ 77 (647)
T PTZ00237 7 PFDYENDSNYANSNPESFWDEVAKKY-VHWDKMYDKVYSGD--------EIYPDWFKGGELNTCYNVLDIHVKNPLKRDQ 77 (647)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhc-CeeeCCcccccCCC--------CCchhhCCCCeeeHHHHHHHHhhcccCCCCc
Confidence 35789999999999999999999997 69999999997532 2237999999999999999998854 7999
Q ss_pred eEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHH
Q 004825 194 IVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLE 273 (728)
Q Consensus 194 ~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~ 273 (728)
+|+++.+.. .+..+++||+||.++++++|+.|+++||++||+|+|+++|++++++++|||+++|++++|++++++.++
T Consensus 78 ~A~~~~~~~--~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~ 155 (647)
T PTZ00237 78 DALIYECPY--LKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKS 155 (647)
T ss_pred eEEEEEcCC--CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHH
Confidence 999986431 112358999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEEecceecCCcccchHhh----Hhhc---CCcEEEEcCCCCC--c------ccccCCCCcCHHHHHH
Q 004825 274 ISARLRISKAKAIFTQDLIIRGDKSIPLYRV----IDAQ---APLAIVIPAKGSS--F------SMKLRDGDISWLDFLE 338 (728)
Q Consensus 274 l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~----~~~~---~~~~~~i~~~~~~--~------~~~~~~~~~~~~~~~~ 338 (728)
+.++|++++|+++|+++...+.++.+...+. .... ...++++...... . .....+....|.+++.
T Consensus 156 l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (647)
T PTZ00237 156 LIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIK 235 (647)
T ss_pred HHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHh
Confidence 9999999999999998866655544443311 1111 1233333221100 0 0001123456777665
Q ss_pred hhhcc-ccCccccccCCCCCceEEEecCCCCCCCceEEecCcH-HHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHH
Q 004825 339 RVRKL-KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT-PFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 416 (728)
Q Consensus 339 ~~~~~-~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~-l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 416 (728)
..... ...........+++++||+|||||||.||||+++|++ ++.........+....+|++++.++++|+++...++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~ 315 (647)
T PTZ00237 236 KIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLY 315 (647)
T ss_pred hhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHH
Confidence 32110 0111223456789999999999999999999999998 544443334456778899999999999998777789
Q ss_pred HHhhhCcEEEEeCCCC-C----cchHHHHHHHhCCcEEEecHHHHHHHHcCCC-----CCCCCCcCeeEEEeecCCCCHH
Q 004825 417 ASLLNGASIALYNGSP-L----GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-----IDGYDWSSIRCFGSTGEASNVD 486 (728)
Q Consensus 417 ~~L~~G~~lvl~~~~~-~----~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~-----~~~~~l~~lr~i~~gGe~l~~~ 486 (728)
.+|+.|++++++++.. . +..+++.|++++||++.++|++++.|++... ....++++||.+++|||+++++
T Consensus 316 ~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~ 395 (647)
T PTZ00237 316 GSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEES 395 (647)
T ss_pred HHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHH
Confidence 9999999999987642 2 4679999999999999999999999987532 1345689999999999999999
Q ss_pred HHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEecccc-CC
Q 004825 487 EYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIF-GA 565 (728)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~-~~ 565 (728)
+.+++.+.++ ++++|.||+||++++++..........+++|+|++|++++|+|++|++++.|+. |||++.++.. +.
T Consensus 396 ~~~~~~~~~g-~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~--GEl~v~~p~~p~~ 472 (647)
T PTZ00237 396 IPEYIENKLK-IKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNEI--GEVAFKLPMPPSF 472 (647)
T ss_pred HHHHHHHhcC-CCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCCc--eEEEEeccCCchh
Confidence 9999988775 899999999999865443332222234789999999999999999999999986 9999965421 11
Q ss_pred -CccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEE
Q 004825 566 -SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAI 644 (728)
Q Consensus 566 -~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv 644 (728)
..|+++++.+.++|..++ | ||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||.|.+|+|+
T Consensus 473 ~~gy~~~~~~~~~~f~~~~---g--~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~-~~p~V~eaavv 546 (647)
T PTZ00237 473 ATTFYKNDEKFKQLFSKFP---G--YYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSIL-KHPLVLECCSI 546 (647)
T ss_pred hCceeCCHHHHHHHHhCCC---C--EEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHH-hCCCceeeEEE
Confidence 124556777777785433 4 9999999999999999999999999999999999999999996 99999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCCC--CCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 645 GVPPPDGGPEQLTIVVVFKDSNYT--PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~~--~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+++++..| +.++|||++++ +.. ..+.+++++.|++.++++|++|++|..|+++++||+|+||||+|+.|++++..
T Consensus 547 g~~~~~~g-~~~~a~Vv~~~-~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 623 (647)
T PTZ00237 547 GIYDPDCY-NVPIGLLVLKQ-DQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLND 623 (647)
T ss_pred eeEcCCCC-CEEEEEEEecc-CccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcC
Confidence 99998887 89999999875 210 24567888899999999999999999999999999999999999999999864
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-84 Score=861.95 Aligned_cols=649 Identities=19% Similarity=0.212 Sum_probs=530.7
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC--C-----CCc---
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD--P-----PAW--- 84 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~--~-----~~~--- 84 (728)
.+++|+..+++.+|.++|++++++... +||++||++|++.|++.|+.+++|+ ||++|++.+. . ...
T Consensus 341 tlplrv~~~~~~t~~~ll~~v~~~~~~a~~hq~~p~~~l~~~l~~~~~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~~~ 418 (3956)
T PRK12467 341 TQVLKAEVDPQASFLELLQQVKRTALGAQAHQDLPFEQLVEALQPERSLSHSPL--FQVMFNHQNTATGGRDREGAQLPG 418 (3956)
T ss_pred eeeeEeecCCCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHhCCCCCCCCCCc--eEEEEEeecccccccccccccCCC
Confidence 468899999999999999999998877 9999999999999999999999999 9999988211 1 000
Q ss_pred -----cCChhhhhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCC
Q 004825 85 -----IPDPEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPN 158 (728)
Q Consensus 85 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 158 (728)
.+......++||++.+...++++.+.+ |++ ++|++.+++++.++|..+|+++. +.++..+...++
T Consensus 419 ~~~~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~lf~~~~~~~~~~~~~~~l~~~~----~~~~~~i~~l~l 489 (3956)
T PRK12467 419 LTVEELSWARHTAQFDLALDTYESAQGLWAAFTYAT-----DLFEATTIERLATHWRNLLEAIV----AEPRRRLGELPL 489 (3956)
T ss_pred ceEEEeecCCCceeeeeEEEEEecCCcEEEEEEEec-----ccCCHHHHHHHHHHHHHHHHHHh----hCcccceecccc
Confidence 111123467899888877778888888 999 99999999999999999999974 444554554444
Q ss_pred CCCCCC-CCCCCCCCCCc---chHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCC
Q 004825 159 GENHLS-NPGGQWLPGAF---VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDK 234 (728)
Q Consensus 159 ~~~~~~-~~~~~w~~~~~---~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~ 234 (728)
..+++. .....|+.... ....+++|.++++++||++|+++.++ ++||+||+++++++|++|++.|+++
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~ 561 (3956)
T PRK12467 490 LDAEERARELVRWNAPATEYAPDCVHQLIEAQARQHPERPALVFGEQ--------VLSYAELNRQANRLAHVLIAAGVGP 561 (3956)
T ss_pred CCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHCCCCeEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCC
Confidence 333322 23445664433 23456788889999999999999877 9999999999999999999999999
Q ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEE
Q 004825 235 GSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIV 314 (728)
Q Consensus 235 gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (728)
|++|+|+++|++++++++|||+|+|++|||+||.+|.+++.+++++++++++|+++...... + .......+.
T Consensus 562 g~~V~i~~~~s~~~vv~~lail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~---~-----~~~~~~~~~ 633 (3956)
T PRK12467 562 DVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQL---P-----VPAGLRSLC 633 (3956)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhc---c-----cccCccEEE
Confidence 99999999999999999999999999999999999999999999999999999987432110 0 000011111
Q ss_pred EcCCCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCC
Q 004825 315 IPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDI 394 (728)
Q Consensus 315 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~ 394 (728)
+.... +.... .....+.....++++|||+|||||||+||||+++|+++.+.+.+....+++
T Consensus 634 ~~~~~---------------~~~~~----~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~ 694 (3956)
T PRK12467 634 LDEPA---------------DLLCG----YSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQL 694 (3956)
T ss_pred ecccc---------------ccccc----cCCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCC
Confidence 11100 00000 011112234568999999999999999999999999999999999899999
Q ss_pred CCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcC
Q 004825 395 RKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSS 472 (728)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~ 472 (728)
+++|++++++|++|+.+++++|.+|+.|+++++++.. .++..+++.|++++||++.++|++++.|++... .....+
T Consensus 695 ~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~ 772 (3956)
T PRK12467 695 AADDSMLMVSTFAFDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASR--VALPRP 772 (3956)
T ss_pred CCCCEEEEecCccHhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhc--cccCCc
Confidence 9999999999999999999999999999999998753 477889999999999999999999999987532 223567
Q ss_pred eeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccc---cccccccCCCCCceEEEEcCCCCccCCC
Q 004825 473 IRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQA---QSLAAFSTPAMGCKLFILGNDGCPIPQN 549 (728)
Q Consensus 473 lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~---~~~~~iG~p~~~~~v~i~d~~g~~vp~g 549 (728)
+|.+++|||++++++.+++.+.+++++++|.||+||+++.++....... ....++|+|++|++++|+|++++++|.|
T Consensus 773 lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G 852 (3956)
T PRK12467 773 QRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQPLANLGLYILDHYLNPVPVG 852 (3956)
T ss_pred ccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEecccccccCCCCcccCCcCCCEEEEECCCCCCCCCC
Confidence 8999999999999999999887777899999999999976655433221 1236899999999999999999999999
Q ss_pred CCceeEEEEeccccCCCccccCccccccccccCCCC-CCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHH
Q 004825 550 VPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSR-NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 628 (728)
Q Consensus 550 ~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~-~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE 628 (728)
+. |||+|++..+..+ |+++++.|+++|..+|+. +|.+||+|||+|++++||.|+|+||+|+|||++|+||+|+|||
T Consensus 853 ~~--GEL~i~G~~v~~G-Yl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE 929 (3956)
T PRK12467 853 VV--GELYIGGAGLARG-YHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIE 929 (3956)
T ss_pred Cc--eEEEecccccchh-hcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHH
Confidence 87 9999977766543 467889999999999974 6889999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCC
Q 004825 629 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATN 708 (728)
Q Consensus 629 ~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~G 708 (728)
++|. .||+|.+|+|++.++. .+ +.++||+++.. ...........+.|+++|++.||.||+|..|+++++||+|+||
T Consensus 930 ~~L~-~~p~V~~a~v~~~~~~-~~-~~lva~vv~~~-~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~G 1005 (3956)
T PRK12467 930 ARLL-AQPGVREAVVLAQPGD-AG-LQLVAYLVPAA-VADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNG 1005 (3956)
T ss_pred HHHH-hCCCcceEEEEEEcCC-CC-cEEEEEEEecc-cccccccccCHHHHHHHHHhhCchhcCCceEeeecccCCCCCC
Confidence 9995 8999999999986543 34 68999999654 2111122234456777899999999999999999999999999
Q ss_pred chhHHHHHHHHH
Q 004825 709 KVMRRVLRKQLA 720 (728)
Q Consensus 709 KvdR~~L~~~~~ 720 (728)
|+||++|++...
T Consensus 1006 KidR~~L~~~~~ 1017 (3956)
T PRK12467 1006 KLDRKALPKPDA 1017 (3956)
T ss_pred CcCHhhcCCccc
Confidence 999999987643
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-80 Score=717.31 Aligned_cols=580 Identities=24% Similarity=0.376 Sum_probs=467.0
Q ss_pred CHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCCCCeEEE
Q 004825 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIR 197 (728)
Q Consensus 118 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~ 197 (728)
+|+.+++++++++..||.++++. +.|.+++.++++... .+..+||.++..|.++++|+++++++|+++|++
T Consensus 2 ~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~~-------~~~~~wf~~~~~n~~~~~l~~~~~~~p~~~Al~ 72 (628)
T TIGR02316 2 RYEEFYQRSIEQPEAFWAEQARR--IDWQTPPQRILDYSN-------PPFARWFAGGRTNLCHNALDRHLDERGEQLALV 72 (628)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHh--CCeecCCcccccCCC-------CCcCccCCCCEeeHHHHHHHHHhCcCCCCeEEE
Confidence 57889999999999999999998 579999998875422 346789999999999999999998999999999
Q ss_pred EeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHH
Q 004825 198 WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277 (728)
Q Consensus 198 ~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~ 277 (728)
+.+. ..+..+++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++
T Consensus 73 ~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~ 150 (628)
T TIGR02316 73 TVSS--ETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALR 150 (628)
T ss_pred EEcC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHH
Confidence 8542 11234589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecceecCCcccchHhhHh----h---cCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCcccc
Q 004825 278 LRISKAKAIFTQDLIIRGDKSIPLYRVID----A---QAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAA 350 (728)
Q Consensus 278 l~~~~~~~il~~~~~~~~~~~~~~~~~~~----~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (728)
+++++++++|+++...+.++.++....++ . ....+++++...... ........+|.++...... ...+.
T Consensus 151 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~ 226 (628)
T TIGR02316 151 IDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM-RLIPGRDVDYAALRTQHED---AQVPV 226 (628)
T ss_pred HHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCccccHHHHhhcccc---CCCCc
Confidence 99999999999887666666555442221 1 123344443221110 0011124456665443211 11222
Q ss_pred ccCCCCCceEEEecCCCCCCCceEEecCcHHH-HHHHHHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEEEe
Q 004825 351 VEQPVEAFTNILFSSGTTGEPKAIPWTNATPF-KAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIALY 428 (728)
Q Consensus 351 ~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~ 428 (728)
....+++++||+|||||||.||||+++|++++ +........++++++|++++.++++|+++. +.++.+|+.|++++++
T Consensus 227 ~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~ 306 (628)
T TIGR02316 227 EWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLY 306 (628)
T ss_pred eecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEe
Confidence 33567999999999999999999999999975 444455566889999999999999999996 6789999999999999
Q ss_pred CCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEec
Q 004825 429 NGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEY 503 (728)
Q Consensus 429 ~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (728)
++. +++..++++|++++||++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.++ ..+++.
T Consensus 307 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~-~~~~~~ 385 (628)
T TIGR02316 307 EGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLG-KPVIDN 385 (628)
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHhC-CCEEec
Confidence 753 356789999999999999999999999987542 23456899999999999999999998887764 789999
Q ss_pred ccccccccccccCCcc---cccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEecccc-CCCc-cccCccccc-
Q 004825 504 CGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIF-GASS-TLLNANHYD- 576 (728)
Q Consensus 504 YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~-~~~~-~~~~~~~~~- 576 (728)
||+||++..++..... .....+++|+|++|++++|+|+ +|+++|.|+. |||+|.++.. +... ++++++.+.
T Consensus 386 yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~--Gel~v~gp~~~g~~~~~~~~~~~~~~ 463 (628)
T TIGR02316 386 YWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEK--GVLTVVPPLPPGCLSTVWGDDARFLK 463 (628)
T ss_pred ccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCc--EEEEEecCCCccccccccCChHHHHH
Confidence 9999998544332221 1234578899999999999998 6999999986 9999966532 2212 233444332
Q ss_pred cccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEE
Q 004825 577 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 656 (728)
Q Consensus 577 ~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l 656 (728)
.+|... +.+||+|||+|++|+||+++++||+||+||++|+||+|.|||++|. .||+|.+|+|++++++..| +.+
T Consensus 464 ~~~~~~----~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~-~~p~V~ea~Vvg~~d~~~g-~~~ 537 (628)
T TIGR02316 464 TYWSHF----KRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVS-SHPSVAEVAVVGVHDELKG-QVA 537 (628)
T ss_pred hhhhcC----CCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeeecCCCC-eEE
Confidence 233222 2459999999999999999999999999999999999999999996 9999999999999998887 899
Q ss_pred EEEEEecCCCCCC---CCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 657 TIVVVFKDSNYTP---PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 657 ~a~vv~~~~~~~~---~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
++||++++ +... .+...+.+.|+++++++|++||+|..|+++++||+|+|||++|+.|+++++..
T Consensus 538 ~~~vv~~~-~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~~ 605 (628)
T TIGR02316 538 VVFAILKE-SDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGR 605 (628)
T ss_pred EEEEEEcC-CcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcCC
Confidence 99999876 4311 12346778899999999999999999999999999999999999999988653
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-83 Score=801.73 Aligned_cols=673 Identities=15% Similarity=0.113 Sum_probs=516.4
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCCCCCccCChhhhhh
Q 004825 16 DIEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPDPPAWIPDPEAAKV 93 (728)
Q Consensus 16 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 93 (728)
..+++|+..++..+|.++|++++++.++ +||++||++|++.+++.|+.+++|.+ |+++|...+... ........+
T Consensus 80 ~~lplr~~~~~~~t~~~~l~~~~~~~~~~~~h~~~p~~~i~~~l~~~~~~~~~p~l-f~~~~~~~~~~~--~~~~~~~~~ 156 (1389)
T TIGR03443 80 RPFVLRLNITPELSFLQLYAKVSEEEKEGASDIGVPFDELSEHIQAAKKLERTPPL-FRLAFQDAPDNQ--QTTYSTGST 156 (1389)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHhccccCCCCCCcc-EEEEeecCCccc--ccccccCCc
Confidence 3578999999999999999999999888 99999999999999999998888833 677665422110 011134467
Q ss_pred ccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCC-----
Q 004825 94 TNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPG----- 167 (728)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (728)
+||.+.+.+.++++...+ |++ ++|++++++++.++|..+|+++. +.|+..+...++..+.+....
T Consensus 157 ~dl~~~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~f~~lL~~~~----~~p~~~l~~l~~~~~~~~~~~~~~~~ 227 (1389)
T TIGR03443 157 TDLTVFLTPSSPELELSIYYNS-----LLFSSDRITIVADQLAQLLSAAS----SNPDEPIGKVSLITPSQKSLLPDPTK 227 (1389)
T ss_pred cceEEEEEecCCcEEEEEEEch-----hcCCHHHHHHHHHHHHHHHHHHH----hCcCCceecccCCCHHHHhhhhcccc
Confidence 899888888788888888 999 99999999999999999999873 444444444333222211111
Q ss_pred -CCCCCCCcchHhhhhcccccCCCCCCeEEEEeccCC-CCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC
Q 004825 168 -GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGD-GGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN 245 (728)
Q Consensus 168 -~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s 245 (728)
..|.. ......++|+++++++|+++|+++..... .....+++||+||+++++++|++|++.|+++|++|+|+++|+
T Consensus 228 ~~~~~~--~~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~ 305 (1389)
T TIGR03443 228 DLDWSG--FRGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRG 305 (1389)
T ss_pred ccCcCc--ccCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCC
Confidence 23432 12346678899999999999998743210 011234899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhc-----CCcEEEEcCCCC
Q 004825 246 VNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQ-----APLAIVIPAKGS 320 (728)
Q Consensus 246 ~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~ 320 (728)
+++++++|||+|+|++|+|+||.+|.+++.+++++++++++|+..........+. ...... ....+.+.....
T Consensus 306 ~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 383 (1389)
T TIGR03443 306 VDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVR--DYIDKELELRTEIPALALQDDGS 383 (1389)
T ss_pred HHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhh--hhhhcccccccccceEEeccccc
Confidence 9999999999999999999999999999999999999999998764210000000 100000 000111111000
Q ss_pred CcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEE
Q 004825 321 SFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV 400 (728)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 400 (728)
...... .....+....... ...........++++|||+|||||||.||||+++|+++++.+.+....+++.++|++
T Consensus 384 ~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 459 (1389)
T TIGR03443 384 LVGGSL---EGGETDVLAPYQA-LKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKF 459 (1389)
T ss_pred cccccc---ccccccccccccc-cccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEE
Confidence 000000 0000000000000 000111223467999999999999999999999999999999998889999999999
Q ss_pred EecCCcchhhhHHHHHHHhhhCcEEEEeCCCC--CcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEe
Q 004825 401 AWPTNLGWMMGPWLVYASLLNGASIALYNGSP--LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGS 478 (728)
Q Consensus 401 l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~--~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~ 478 (728)
++.++++|+.+++++|.+|+.|+++++++... ++..+++.|++++||++.++|++++.|.... ...+++||.+++
T Consensus 460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~ 536 (1389)
T TIGR03443 460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFF 536 (1389)
T ss_pred EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEE
Confidence 99999999999999999999999999986432 5668999999999999999999999987542 234789999999
Q ss_pred ecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCccc----------ccccccccCCCCCceEEEEcCC--CCcc
Q 004825 479 TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ----------AQSLAAFSTPAMGCKLFILGND--GCPI 546 (728)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~v~i~d~~--g~~v 546 (728)
|||++++....++.+..++++++|.||+||+++.++...... .....++|+|++|++++|+|++ ++++
T Consensus 537 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~ 616 (1389)
T TIGR03443 537 VGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTC 616 (1389)
T ss_pred ecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcC
Confidence 999999999888887777889999999999987554322110 0124689999999999999975 5789
Q ss_pred CCCCCceeEEEEeccccCCCccccCccccccccccCCCC----------------------CCceeEEeCceEEEecCce
Q 004825 547 PQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSR----------------------NGQILRRHGDVFERTSGGY 604 (728)
Q Consensus 547 p~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~----------------------~g~~~y~TGDl~~~~~dG~ 604 (728)
|.|+. |||+|+++.+..+ |+++++.|+++|..+|+. ++.+||+|||+|++++||.
T Consensus 617 ~~G~~--GEL~i~G~~v~~G-Y~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~ 693 (1389)
T TIGR03443 617 GVGEV--GEIYVRAGGLAEG-YLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGN 693 (1389)
T ss_pred CCCCc--eEEEecccccchh-cCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCC
Confidence 99987 9999977766543 467889999999876531 2467999999999999999
Q ss_pred EEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCC-------------
Q 004825 605 YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPD------------- 671 (728)
Q Consensus 605 l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~------------- 671 (728)
|+|+||.|||||++|+||+|.|||++|. +||.|.+++|++.+++..+ +.++||+++.. +.....
T Consensus 694 l~~~GR~dd~Iki~G~rI~p~eIE~~l~-~~p~V~~a~v~~~~~~~~~-~~lva~vv~~~-~~~~~~~~~~~~~~~~~~~ 770 (1389)
T TIGR03443 694 VECCGRADDQVKIRGFRIELGEIDTHLS-QHPLVRENVTLVRRDKDEE-PTLVSYIVPQD-KSDELEEFKSEVDDEESSD 770 (1389)
T ss_pred EEEecccCCEEEeCcEEecHHHHHHHHH-hCcchheeEEEEeeCCCCC-eEEEEEEeccC-ccccccccccccccccccc
Confidence 9999999999999999999999999995 8999999999988776665 89999999763 110000
Q ss_pred --------HHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 672 --------LNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 672 --------~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
..+..+.++++++++||.||+|..|+++++||+|+||||||++|++
T Consensus 771 ~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~ 824 (1389)
T TIGR03443 771 PVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPF 824 (1389)
T ss_pred cchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCC
Confidence 1123567788899999999999999999999999999999999964
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-80 Score=719.25 Aligned_cols=583 Identities=25% Similarity=0.384 Sum_probs=467.3
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCc--eeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccC-CCCCC
Q 004825 117 SSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQ--CILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSK-RSLDD 193 (728)
Q Consensus 117 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~-~~pd~ 193 (728)
.+|+.++++++++++.||.++.+.+ .|.+++. ++++.... -....+..+||.++..|.++++|+++++ .+|++
T Consensus 30 ~~y~~~~~~s~~~~~~fw~~~~~~~--~~~~~~~~~~v~~~~~~--~~~~~~~~~wf~g~~~N~~~~~l~~~~~~~~~~~ 105 (666)
T PLN02654 30 QQYMEMYKRSVDDPAGFWSDIASQF--YWKQKWEGDEVCSENLD--VRKGPISIEWFKGGKTNICYNCLDRNVEAGNGDK 105 (666)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhC--CeecCCCcceEeccCCC--cccCCccccccCCCEeeHHHHHHHHhhccCCCCC
Confidence 4689999999999999999999985 5777763 55532110 0001235799999999999999999886 58999
Q ss_pred eEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHH
Q 004825 194 IVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLE 273 (728)
Q Consensus 194 ~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~ 273 (728)
+|+++.+. ..+..+++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.++
T Consensus 106 ~Al~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~ 183 (666)
T PLN02654 106 IAIYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAES 183 (666)
T ss_pred EEEEEEcC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHH
Confidence 99998543 1223458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEEecceecCCcccchHhhHhh----c-----CC-cEEEEcCCCCC--cccc-cCCCCcCHHHHHHhh
Q 004825 274 ISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDA----Q-----AP-LAIVIPAKGSS--FSMK-LRDGDISWLDFLERV 340 (728)
Q Consensus 274 l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~----~-----~~-~~~~i~~~~~~--~~~~-~~~~~~~~~~~~~~~ 340 (728)
+.+++++++|+++|+++...+.++.+.....++. . .. .++........ .... .......|+++....
T Consensus 184 l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (666)
T PLN02654 184 LAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNY 263 (666)
T ss_pred HHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcC
Confidence 9999999999999999887766665554422221 0 00 11111111000 0000 001234455554321
Q ss_pred hccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHH-HHHHHHHhcCCCCCCEEEecCCcchhhhH-HHHHHH
Q 004825 341 RKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK-AAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYAS 418 (728)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (728)
+...+.....+++++||+|||||||.||||+++|++++. ........++++++|++++.+|++|.++. +.++++
T Consensus 264 ----~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 339 (666)
T PLN02654 264 ----PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGP 339 (666)
T ss_pred ----CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHH
Confidence 111223346789999999999999999999999999764 34445567899999999999999999987 568899
Q ss_pred hhhCcEEEEeCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 419 LLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 419 L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
|+.|++++++++. +++..++++|++++||++.++|++++.|++... ....++++||.++++||+++++.++++.+
T Consensus 340 L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~ 419 (666)
T PLN02654 340 MLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFN 419 (666)
T ss_pred HHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHH
Confidence 9999999999864 367789999999999999999999999987643 23457889999999999999999999998
Q ss_pred ccCC--CCeEecccccccccccccCCcc-cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCcc-c
Q 004825 494 RALY--KPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASST-L 569 (728)
Q Consensus 494 ~~~~--~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~-~ 569 (728)
.++. +++.+.||+||+++..+...+. .+..++++|+|++|++++|+|++|++++.|+. |||+|.+++.+...+ +
T Consensus 420 ~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~--Gel~v~~~~p~~~~gy~ 497 (666)
T PLN02654 420 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECS--GYLCVKKSWPGAFRTLY 497 (666)
T ss_pred HhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCc--eEEEEcCCCchhhhhhc
Confidence 8764 6899999999998755443331 23456789999999999999999999998875 999997643333333 4
Q ss_pred cCcccccc-ccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecC
Q 004825 570 LNANHYDV-YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 648 (728)
Q Consensus 570 ~~~~~~~~-~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~ 648 (728)
++++.+.+ +|... +| ||+|||+|++|+||+++++||+||+||++|+||+|.|||++|. .||+|.+++|+++++
T Consensus 498 ~~~~~~~~~~~~~~---~g--~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~-~~p~V~eaaVvg~~d 571 (666)
T PLN02654 498 GDHERYETTYFKPF---AG--YYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALV-SHPQCAEAAVVGIEH 571 (666)
T ss_pred CChHHHHHhhhhcC---CC--EEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEeeEc
Confidence 45555543 33322 24 9999999999999999999999999999999999999999996 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 649 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+..| +.+++||++++ +. . ..+++++.|+++++++|++|++|..|+++++||+|+|||++|+.|++.+..
T Consensus 572 ~~~g-e~~~a~Vvl~~-~~-~-~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 572 EVKG-QGIYAFVTLVE-GV-P-YSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 640 (666)
T ss_pred CCCC-eEEEEEEEECC-CC-C-CCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcC
Confidence 8887 89999999987 54 2 235788889999999999999999999999999999999999999999865
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-80 Score=716.69 Aligned_cols=607 Identities=26% Similarity=0.401 Sum_probs=486.5
Q ss_pred CCCccCChhhhhhccHHHHHHHhccccccCCCCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCC
Q 004825 81 PPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGE 160 (728)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (728)
+++|.|+.+....++|+.+....... |+..+.+|+.+++++++++..||..+++...+.|.++++.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~--- 74 (655)
T PRK03584 3 DPLWTPSAERIAASRMTAFIRWLAAR-----RGLSFDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTVVLAGRR--- 74 (655)
T ss_pred CCCCCCChhhcccchHHHHHHHHHHH-----hCCChHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCCcEeecCCC---
Confidence 45888887777778888775553322 3444568899999999999999999999877789988888865422
Q ss_pred CCCCCCCCCCCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 004825 161 NHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAI 240 (728)
Q Consensus 161 ~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai 240 (728)
.+..+||.++..|.+++++++ .+|+++|+++.+. .+..+++||+||.++++++|+.|++.|+++||+|+|
T Consensus 75 ----~~~~~wf~~~~~n~~~~~~~~---~~~~~~Al~~~~~---~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 144 (655)
T PRK03584 75 ----MPGARWFPGARLNYAENLLRH---RRDDRPAIIFRGE---DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAA 144 (655)
T ss_pred ----CCCCeeCCCCEeeHHHHhhcc---CCCCCeEEEEECC---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 245789999999999999974 5799999998764 233568999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhh----HhhcC--CcEEE
Q 004825 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRV----IDAQA--PLAIV 314 (728)
Q Consensus 241 ~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~----~~~~~--~~~~~ 314 (728)
+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++....+++.+..... ..... ..+++
T Consensus 145 ~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (655)
T PRK03584 145 YLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVV 224 (655)
T ss_pred EcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEE
Confidence 9999999999999999999999999999999999999999999999999876655555444321 12222 13444
Q ss_pred EcCCCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHH-HHHHHHHHhcC
Q 004825 315 IPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPF-KAAADAWCHMD 393 (728)
Q Consensus 315 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~ 393 (728)
++................|.++..... ..........+++++||+|||||||.||||+++|++++ +.+......++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~ 301 (655)
T PRK03584 225 VPYLGPAAAAAALPGALLWEDFLAPAE---AAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCD 301 (655)
T ss_pred EecCCCcccccccCCcccHHHHhhccc---cCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcC
Confidence 433221111111223456777655211 11222345677999999999999999999999999875 44556666789
Q ss_pred CCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCC
Q 004825 394 IRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGY 468 (728)
Q Consensus 394 ~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~ 468 (728)
+.++|+++++++++|+++. .++.+|+.|++++++++. +++..++++|+++++|++.++|++++.+.+... ....
T Consensus 302 ~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~ 380 (655)
T PRK03584 302 LGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETH 380 (655)
T ss_pred CCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccC
Confidence 9999999999999998654 366899999999998753 367789999999999999999999999976532 2345
Q ss_pred CCcCeeEEEeecCCCCHHHHHHHHhccC-CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccC
Q 004825 469 DWSSIRCFGSTGEASNVDEYLWLMGRAL-YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIP 547 (728)
Q Consensus 469 ~l~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp 547 (728)
++++||.+++|||++++++.+++.+.++ +..+.+.||+||++..+.......+...+++|.|.+|++++|+|++|+++
T Consensus 381 ~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~- 459 (655)
T PRK03584 381 DLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV- 459 (655)
T ss_pred ChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC-
Confidence 6889999999999999999999988773 57899999999987554433333344567899999999999999999999
Q ss_pred CCCCceeEEEEeccccCCCcccc-Ccccc---ccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeec
Q 004825 548 QNVPGMGELALSPLIFGASSTLL-NANHY---DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVS 623 (728)
Q Consensus 548 ~g~~giGEl~v~~~~~~~~~~~~-~~~~~---~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~ 623 (728)
.|+. |||+|.++..+...+|+ +++.+ ..+|...+ | ||+|||+|++|+||+++|+||+||+||++|+||+
T Consensus 460 ~g~~--GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~---g--~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~ 532 (655)
T PRK03584 460 VGEV--GELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFP---G--VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIG 532 (655)
T ss_pred CCCc--eEEEEccCCCCCcceeeCCCccchHHHhhhccCC---C--EeecCCeEEECCCCeEEEEeeccCeeecCcEEEC
Confidence 6775 99999765433333344 44432 23343322 3 8999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCC
Q 004825 624 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLP 703 (728)
Q Consensus 624 ~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP 703 (728)
|.|||++|. .||+|.+|+|++.+++..+ +.+++||++++ +. . ..+++++.|+++++++|++||+|..|+++++||
T Consensus 533 p~EIE~~l~-~~p~V~ea~vvg~~~~~~g-~~~~a~vv~~~-~~-~-~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP 607 (655)
T PRK03584 533 TAEIYRQVE-ALPEVLDSLVIGQEWPDGD-VRMPLFVVLAE-GV-T-LDDALRARIRTTIRTNLSPRHVPDKIIAVPDIP 607 (655)
T ss_pred HHHHHHHHH-hCCCcceEEEEeeEcCCCC-EEEEEEEEECC-CC-C-CcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCC
Confidence 999999995 9999999999999998777 89999999987 54 2 335677788999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhh
Q 004825 704 RTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 704 ~t~~GKvdR~~L~~~~~~~ 722 (728)
+|+||||+|+.|++++...
T Consensus 608 ~t~sGKi~r~~lr~~~~~~ 626 (655)
T PRK03584 608 RTLSGKKVELPVKKLLHGR 626 (655)
T ss_pred CCCCccchHHHHHHHHcCC
Confidence 9999999999999988753
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-80 Score=714.49 Aligned_cols=580 Identities=27% Similarity=0.428 Sum_probs=473.1
Q ss_pred CCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCCCCeE
Q 004825 116 ISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIV 195 (728)
Q Consensus 116 ~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~pd~~A 195 (728)
+.+|+.++++++++++.||..+++. .+.|.+++.++++... .+..+||.++..|.++++|+++++++|+++|
T Consensus 4 ~~~y~~~~~~s~~~~~~fw~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~wf~~~~~n~~~~~l~~~~~~~p~~~A 75 (625)
T TIGR02188 4 LEQYKELYEESIEDPDKFWAKLARE-LLDWFKPFTKVLDWSF-------PPFYKWFVGGELNVSYNCVDRHLEARPDKVA 75 (625)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHh-cCceecCCceeecCCC-------CCCCeeCCCCEEEHHHHHHHHhhccCCCCeE
Confidence 4578999999999999999999988 4579999998875432 3468999999999999999999999999999
Q ss_pred EEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHH
Q 004825 196 IRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEIS 275 (728)
Q Consensus 196 l~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~ 275 (728)
+++.+. ..+..+++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|++++|++|+++.+++.
T Consensus 76 l~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~ 153 (625)
T TIGR02188 76 IIWEGD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALA 153 (625)
T ss_pred EEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHH
Confidence 998654 123356899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEEEecceecCCcccchHhh----HhhcC---CcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCcc
Q 004825 276 ARLRISKAKAIFTQDLIIRGDKSIPLYRV----IDAQA---PLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEF 348 (728)
Q Consensus 276 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~----~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (728)
+++++++++++|+++...++++.++.... +...+ ..++++........ ........|.++..... ...
T Consensus 154 ~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~ 228 (625)
T TIGR02188 154 DRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP-WVEGRDVWWHDLMAKAS----AYC 228 (625)
T ss_pred HHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcC-ccccccccHHHHHhhcC----CCC
Confidence 99999999999999887766665554422 22222 12333332221111 01112345666654322 122
Q ss_pred ccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHH-HHHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEE
Q 004825 349 AAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAA-ADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIA 426 (728)
Q Consensus 349 ~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv 426 (728)
.+....+++++||+|||||||.||||+++|++++... ......++++++|++++.++++|.++. +.++.+|..|++++
T Consensus 229 ~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~v 308 (625)
T TIGR02188 229 EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTV 308 (625)
T ss_pred CceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEE
Confidence 3345678999999999999999999999999976543 334456789999999999999999887 67899999999999
Q ss_pred EeCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC--CCCCCcCeeEEEeecCCCCHHHHHHHHhccC--CCC
Q 004825 427 LYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--YKP 499 (728)
Q Consensus 427 l~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~ 499 (728)
++++. +++..+++.|++++||++.++|++++.|.+.... ...++++||.+++|||++++++++++.+.++ +++
T Consensus 309 l~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~ 388 (625)
T TIGR02188 309 MFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCP 388 (625)
T ss_pred EECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCc
Confidence 98754 3678899999999999999999999999876432 3356889999999999999999999988775 378
Q ss_pred eEecccccccccccccCCcc-cccccccccCCCCCceEEEEcCCCCccC-CCCCceeEEEEeccccCCCcc-ccCccccc
Q 004825 500 VIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIP-QNVPGMGELALSPLIFGASST-LLNANHYD 576 (728)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~vp-~g~~giGEl~v~~~~~~~~~~-~~~~~~~~ 576 (728)
++|.||+||+++.++..... .+..++++|+|++|++++|+|++|++++ +|+. |||+|.+++.+...+ +++++.+.
T Consensus 389 i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~--GeL~v~~p~p~~~~gy~~~~~~~~ 466 (625)
T TIGR02188 389 IVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEG--GYLVIKQPWPGMLRTIYGDHERFV 466 (625)
T ss_pred eEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCCe--EEEEEccCCCcccccccCChHHHH
Confidence 99999999998765443221 2345678999999999999999999999 8886 999997654333333 44444443
Q ss_pred cccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEE
Q 004825 577 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 656 (728)
Q Consensus 577 ~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l 656 (728)
..|.. ..+| ||+|||+|++++||+++++||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++..| +.+
T Consensus 467 ~~~~~--~~~g--~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~~~~~g-~~~ 540 (625)
T TIGR02188 467 DTYFS--PFPG--YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALV-SHPAVAEAAVVGIPDDIKG-QAI 540 (625)
T ss_pred HHHhc--cCCC--EEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEE
Confidence 33321 1124 9999999999999999999999999999999999999999996 8999999999999998877 899
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 657 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 657 ~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
++||++.+ +. ....++.+.|+++++++|+++++|..|+++++||+|+|||++|+.|++++..
T Consensus 541 ~a~vv~~~-~~--~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~ 602 (625)
T TIGR02188 541 YAFVTLKD-GY--EPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAG 602 (625)
T ss_pred EEEEEeCC-CC--CCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcC
Confidence 99999987 54 2334577788889999999999999999999999999999999999999865
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-83 Score=866.90 Aligned_cols=632 Identities=19% Similarity=0.205 Sum_probs=524.8
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC--CCCc--------
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD--PPAW-------- 84 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~--~~~~-------- 84 (728)
.+++|+..+.+.+|.++|+++.+...+ +||++||++|++.+++.|+.+++|+ |+++|++.+. ....
T Consensus 2890 tlPlrv~l~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~~~ 2967 (5163)
T PRK12316 2890 TQVLRAQVDAQLAFRDLLGQVKEQALGAQAHQDLPFEQLVEALQPERSLSHSPL--FQVMYNHQSGERAAAQLPGLHIES 2967 (5163)
T ss_pred ceeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhccccccCCCCc--eeEEEeeeccccccccCCCceeEe
Confidence 478889999999999999999998877 9999999999999999999999999 9999988221 1000
Q ss_pred cCChhhhhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCC
Q 004825 85 IPDPEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHL 163 (728)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (728)
........++||.+.+.+.++++...+ |++ ++|++++++++..+|..+|+++. +.++..+...++..+++
T Consensus 2968 ~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~f~~lL~~l~----~~p~~~i~~l~~~~~~~ 3038 (5163)
T PRK12316 2968 FAWDGAATQFDLALDTWESAEGLGASLTYAT-----DLFDARTVERLARHWQNLLRGMV----ENPQRSVDELAMLDAEE 3038 (5163)
T ss_pred eeccCCccceeeEEEEEecCCcEEEEEEECc-----CCCCHHHHHHHHHHHHHHHHHHH----hCCCCchhhccCCCHHH
Confidence 111124567899888877777888888 999 99999999999999999999984 34444444444333322
Q ss_pred C-CCCCCCCCCCcc----hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEE
Q 004825 164 S-NPGGQWLPGAFV----NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAI 238 (728)
Q Consensus 164 ~-~~~~~w~~~~~~----~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V 238 (728)
. .....|+..... ...+++|.++++++|+++|+++.++ .+||+||+++++++|++|++.|+++|++|
T Consensus 3039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~gv~~~~~V 3110 (5163)
T PRK12316 3039 RGQLLEAWNATAAEYPLERGVHRLFEEQVERTPDAVALAFGEQ--------RLSYAELNRRANRLAHRLIERGVGPDVLV 3110 (5163)
T ss_pred HHHHHHHhCCCCcCCCCcCCHHHHHHHHHHhCCCCeeEeeCCe--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 2 223456654322 3467788999999999999999887 99999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCC
Q 004825 239 AIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAK 318 (728)
Q Consensus 239 ai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 318 (728)
+|+++||+++++++|||+|+|++||||||++|.+|+.+++++++++++|++.... ++. ......+.++..
T Consensus 3111 ~l~~~~s~~~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~-----~~~-----~~~~~~~~~~~~ 3180 (5163)
T PRK12316 3111 GVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLR-----LPL-----AQGVQVLDLDRG 3180 (5163)
T ss_pred EEEccCCHHHHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCcccc-----CCc-----cCCccEEEeccc
Confidence 9999999999999999999999999999999999999999999999999986430 000 001112222111
Q ss_pred CCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCC
Q 004825 319 GSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKAD 398 (728)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d 398 (728)
.. . .....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|
T Consensus 3181 ~~------------------~----~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d 3238 (5163)
T PRK12316 3181 DE------------------N----YAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGD 3238 (5163)
T ss_pred cc------------------c----ccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCccc
Confidence 00 0 0011122345679999999999999999999999999999999999999999999
Q ss_pred EEEecCCcchhhhHHHHHHHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEE
Q 004825 399 IVAWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 476 (728)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i 476 (728)
+++++++++||.+++++|.+|+.|+++++.+.. .++..+.+.++++++|++.++|+++..+++.. ....++++|.+
T Consensus 3239 ~~l~~~~~~fd~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~--~~~~~~~lr~~ 3316 (5163)
T PRK12316 3239 RVLQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEE--DAHRCTSLKRI 3316 (5163)
T ss_pred EEEeecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcc--ccccCCcceEE
Confidence 999999999999999999999999999998643 35678999999999999999999999987653 23346789999
Q ss_pred EeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcc-cccccccccCCCCCceEEEEcCCCCccCCCCCceeE
Q 004825 477 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 555 (728)
Q Consensus 477 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGE 555 (728)
++|||++++++.++|.. +.+++|.||+||+++.++..... ......+||+|++|++++|+|++++++|.|++ ||
T Consensus 3317 ~~gGe~l~~~~~~~~~~---~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GE 3391 (5163)
T PRK12316 3317 VCGGEALPADLQQQVFA---GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPVPVGAL--GE 3391 (5163)
T ss_pred EEccccCCHHHHHHHHh---CCcEeeccCCCccEeeEeEEeccCCCCCCCccceecCCCEEEEECCCCCCCCCCCC--ce
Confidence 99999999999998873 47799999999999876654432 22345799999999999999999999999987 99
Q ss_pred EEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCC
Q 004825 556 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 635 (728)
Q Consensus 556 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~ 635 (728)
|+|++..+..+ |+++++.|+++|+.+|+.+|.|||+|||+|||++||.|+|+||+|+|||++|+||+|+|||++|. .|
T Consensus 3392 l~i~G~~v~~G-Y~~~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~qvKi~G~rIel~eIE~~l~-~~ 3469 (5163)
T PRK12316 3392 LYLGGEGLARG-YHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLL-EH 3469 (5163)
T ss_pred EEecccccchh-cCCChhhchhhCCCCCCCCCCeeEecCceEEECCCCCEEEecccCCeEeeCcEeeChHHHHHHHH-hC
Confidence 99987776654 46788999999999999889999999999999999999999999999999999999999999995 99
Q ss_pred CCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHH
Q 004825 636 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 715 (728)
Q Consensus 636 p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L 715 (728)
|+|.+|+|++.. + ++++|||++.. +. ....+.|+++|+++||.||+|..|+.+++||+|+|||+||++|
T Consensus 3470 ~~V~~a~v~~~~----~-~~l~a~vv~~~-~~-----~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKvdr~~L 3538 (5163)
T PRK12316 3470 PWVREAVVLAVD----G-RQLVAYVVPED-EA-----GDLREALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKAL 3538 (5163)
T ss_pred CCcceEEEEEcc----C-CeEEEEEEcCC-cC-----cccHHHHHHHHHhhCCcccCcceeeeHhhcCCCCCcchhHHhc
Confidence 999999998764 3 68999999865 22 1223456668899999999999999999999999999999999
Q ss_pred HHHH
Q 004825 716 RKQL 719 (728)
Q Consensus 716 ~~~~ 719 (728)
++..
T Consensus 3539 ~~~~ 3542 (5163)
T PRK12316 3539 PRPD 3542 (5163)
T ss_pred CCCc
Confidence 7644
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-79 Score=709.07 Aligned_cols=605 Identities=25% Similarity=0.389 Sum_probs=482.5
Q ss_pred CCCccCChhhhhhccHHHHHHHhccccccCCCCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCC
Q 004825 81 PPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGE 160 (728)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (728)
.++|.|+.+....++|..+.+..... |+..+.+|+.++++|++++..||..+++.+.+.|.+++.++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~--- 75 (652)
T TIGR01217 4 QPLWQPDAQRIAQARMTRFQAWAGEH-----HGAAEGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCARVVDDRT--- 75 (652)
T ss_pred CCCCCCChhhcccchHHHHHHHHHHh-----hCCChhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCceeeeCCC---
Confidence 45888887777778888776554432 4445568899999999999999999999988899999999986422
Q ss_pred CCCCCCCCCCCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 004825 161 NHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAI 240 (728)
Q Consensus 161 ~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai 240 (728)
....+||.++..|.+++++++ .++++|+++.+.+ +..+++||+||.++++++|+.|+++|+++||+|+|
T Consensus 76 ----~~~~~wf~~~~~n~~~~~~~~----~~~~~a~~~~~~~---~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i 144 (652)
T TIGR01217 76 ----MPGAQWFPGARLNYAENLLRA----AGTEPALLYVDET---HEPAPVTWAELRRQVASLAAALRALGVRPGDRVSG 144 (652)
T ss_pred ----CCCCEECCCCeeeHHHHHhcc----CCCCeEEEEECCC---CCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 345789999999999999984 4689999997652 33468999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhh----HhhcC--CcEEE
Q 004825 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRV----IDAQA--PLAIV 314 (728)
Q Consensus 241 ~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~----~~~~~--~~~~~ 314 (728)
+++|++++++++|||+++|++++|++|.++.+++.+++++++|+++|+++...++++....... ....+ ..+++
T Consensus 145 ~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~ 224 (652)
T TIGR01217 145 YLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVH 224 (652)
T ss_pred EcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEE
Confidence 9999999999999999999999999999999999999999999999999887766666554422 22222 22344
Q ss_pred EcCCCCCc-ccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHH-HHHHHHHHhc
Q 004825 315 IPAKGSSF-SMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPF-KAAADAWCHM 392 (728)
Q Consensus 315 i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~-~~~~~~~~~~ 392 (728)
++...... ......+...|+++...... .........++++++|+|||||||.||||+++|++++ +.+......+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~ 301 (652)
T TIGR01217 225 IPYLGPRETEAPKIDGALDLEDFTAAAQA---AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC 301 (652)
T ss_pred EeCCCCcccccccccCcccHHHHHhcccC---CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc
Confidence 43221100 00011234567776543211 1112234567999999999999999999999999865 4455555668
Q ss_pred CCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCC---CcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCC
Q 004825 393 DIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDG 467 (728)
Q Consensus 393 ~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~---~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~ 467 (728)
+++++|+++++++++|+++.+ ++.+|+.|++++++++.+ ++..+++++++++||++..+|++++.+..... ...
T Consensus 302 ~~~~~d~~~~~~~~~~~~~~~-~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~ 380 (652)
T TIGR01217 302 DLGPGDRLFYYTTTGWMMWNW-LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPART 380 (652)
T ss_pred CCCCCcEEEEeCCcchhhhHH-HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCcccc
Confidence 899999999999999987544 558999999999997543 56789999999999999999998888765421 234
Q ss_pred CCCcCeeEEEeecCCCCHHHHHHHHhccC-CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCcc
Q 004825 468 YDWSSIRCFGSTGEASNVDEYLWLMGRAL-YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPI 546 (728)
Q Consensus 468 ~~l~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~v 546 (728)
.++++||.+++|||+++++..+++.+.++ +..+.+.||+||++.++....+..+...+++|.|.+|++++|+|++|+++
T Consensus 381 ~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~ 460 (652)
T TIGR01217 381 HDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPV 460 (652)
T ss_pred CChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCC
Confidence 67899999999999999999999887764 34678999999976544433333334457899999999999999999998
Q ss_pred CCCCCceeEEEEeccccCCCcc-ccCccccc---cccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceee
Q 004825 547 PQNVPGMGELALSPLIFGASST-LLNANHYD---VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 622 (728)
Q Consensus 547 p~g~~giGEl~v~~~~~~~~~~-~~~~~~~~---~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri 622 (728)
+ |+. |||++.++..+...+ +++++.++ .+|...+ | ||+|||+|++|+||+++++||+||+||++|+||
T Consensus 461 ~-g~~--GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~---g--~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri 532 (652)
T TIGR01217 461 T-GEV--GELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYP---G--VWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRM 532 (652)
T ss_pred C-CCc--cEEEEecCCCccccceeCCCccchhHHhhhcCCC---C--EEEcCCcEEECCCCcEEEEecccCeEecCCEEc
Confidence 4 775 999997654333333 44444332 3443322 3 899999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCC
Q 004825 623 SSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSL 702 (728)
Q Consensus 623 ~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~l 702 (728)
+|.|||++|. .||+|.+|+|++++++..| +.++|||++++ +. . ..+++.++|+++++++|++|++|+.|+++++|
T Consensus 533 ~p~EIE~~l~-~~p~V~eaavvg~~~~~~g-e~~~afVv~~~-~~-~-~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~l 607 (652)
T TIGR01217 533 GSAEIYNAVE-RLDEVRESLCIGQEQPDGG-YRVVLFVHLAP-GA-T-LDDALLDRIKRTIRAGLSPRHVPDEIIEVPGI 607 (652)
T ss_pred CHHHHHHHHH-hCCCcceEEEEeeecCCCC-EEEEEEEEECC-CC-C-CCHHHHHHHHHHHHhhCCCCcCCCEEEECCCC
Confidence 9999999996 9999999999999998877 89999999987 54 2 23567778899999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHh
Q 004825 703 PRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 703 P~t~~GKvdR~~L~~~~~~ 721 (728)
|+|+||||+|+.|++.+..
T Consensus 608 P~T~sGKi~r~~Lr~~~~~ 626 (652)
T TIGR01217 608 PHTLTGKRVEVAVKRVLQG 626 (652)
T ss_pred CCCCCccChHHHHHHHHcC
Confidence 9999999999999998754
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-83 Score=861.71 Aligned_cols=641 Identities=19% Similarity=0.199 Sum_probs=528.5
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC-----CC-------
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD-----PP------- 82 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~-----~~------- 82 (728)
.+++++..+++.+|.++|+++++.... +||++||++||+.|++.|+.+++|+ ||++|++.+. ..
T Consensus 341 ~lplr~~~~~~~tf~~~l~~v~~~~~~a~~hq~~p~~~iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~~~ 418 (5163)
T PRK12316 341 TQVLRSVFDGRTRVATLLAGVKDTVLGAQAHQDLPFERLVEALKVERSLSHSPL--FQVMYNHQPLVADIEALDTVAGLE 418 (5163)
T ss_pred eEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhCCCCCCCCCCc--EEEEEEeecccccccccccCCCce
Confidence 468889999999999999999998876 9999999999999999999999999 9999986321 00
Q ss_pred -CccCChhhhhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCC
Q 004825 83 -AWIPDPEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGE 160 (728)
Q Consensus 83 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (728)
...+......++||.+.+.+.++++.+.+ |++ ++|++++++++.++|..+|+++. +.++..+...++..
T Consensus 419 ~~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~i~----~~p~~~i~~l~~~~ 489 (5163)
T PRK12316 419 FGQLEWKSRTTQFDLTLDTYEKGGRLHAALTYAT-----DLFEARTVERMARHWQNLLRGMV----ENPQARVDELPMLD 489 (5163)
T ss_pred EEeeccCCCccceeEEEEEEEcCCcEEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHH----hccccccccCCCCC
Confidence 00111224467899888888888888888 999 99999999999999999999973 44555555544333
Q ss_pred CCCC-CCCCCCCCCCc----chHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCC
Q 004825 161 NHLS-NPGGQWLPGAF----VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKG 235 (728)
Q Consensus 161 ~~~~-~~~~~w~~~~~----~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g 235 (728)
+++. .....|+.... .....++|.++++++|+++|+++.++ ++||+||+++++++|+.|++.|+++|
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~--------~~TY~eL~~~~~~lA~~L~~~gv~~g 561 (5163)
T PRK12316 490 AEERGQLVEGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEE--------TLDYAELNRRANRLAHALIERGVGPD 561 (5163)
T ss_pred HHHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHCCCCeEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3222 22234543322 23467888999999999999999877 99999999999999999999999999
Q ss_pred CEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEE
Q 004825 236 SAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVI 315 (728)
Q Consensus 236 d~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i 315 (728)
++|+|+++|++++++++|||+|+|++|||+||.+|.+++.+++++++++++|++......... ......+.+
T Consensus 562 ~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~ 633 (5163)
T PRK12316 562 VLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL--------AAGVQVLDL 633 (5163)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc--------ccCceEEEe
Confidence 999999999999999999999999999999999999999999999999999998753211000 001111222
Q ss_pred cCCCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCC
Q 004825 316 PAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIR 395 (728)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 395 (728)
+... .+ ... ...........++++|||+|||||||+||||+++|+++++.+.+....++++
T Consensus 634 ~~~~------------~~---~~~----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~ 694 (5163)
T PRK12316 634 DRPA------------AW---LEG----YSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLG 694 (5163)
T ss_pred cCcc------------hh---hcc----CCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCC
Confidence 1100 00 000 0111122345689999999999999999999999999999999999999999
Q ss_pred CCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC--CCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCe
Q 004825 396 KADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG--SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 473 (728)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~--~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~l 473 (728)
++|++++.+|++|+++++++|.+|+.|+++++++. ..++..+++.|++++||++.++|++++.|++... ...++++
T Consensus 695 ~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l 772 (5163)
T PRK12316 695 VGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSL 772 (5163)
T ss_pred CCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCc
Confidence 99999999999999999999999999999999864 3477789999999999999999999999986532 3357899
Q ss_pred eEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCc-ccccccccccCCCCCceEEEEcCCCCccCCCCCc
Q 004825 474 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPG 552 (728)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~g 552 (728)
|.+++|||++++++.+++.+.+++++++|.||+||+++.++.... .......++|+|++|++++|+|++++++|.|+.
T Consensus 773 ~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~- 851 (5163)
T PRK12316 773 RRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVL- 851 (5163)
T ss_pred cEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCc-
Confidence 999999999999999999888888899999999999865443322 222345689999999999999999999999987
Q ss_pred eeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHh
Q 004825 553 MGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN 632 (728)
Q Consensus 553 iGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~ 632 (728)
|||+|++..+.. .|+++++.|++.|..+|+.+|.+||+|||+|++++||.|+|+||+|+|||++|+||+|+|||++|.
T Consensus 852 -GEl~i~G~~v~~-GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~ 929 (5163)
T PRK12316 852 -GELYLAGRGLAR-GYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLL 929 (5163)
T ss_pred -eEEEecccccCh-hhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHH
Confidence 999997776654 346788899999999998888999999999999999999999999999999999999999999995
Q ss_pred cCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhH
Q 004825 633 AVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMR 712 (728)
Q Consensus 633 ~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR 712 (728)
.||+|.+|+|++.+ + +.++|||++.+ +. ....+ .++++++++||.||+|..|+++++||+|+|||+||
T Consensus 930 -~~p~V~~a~V~~~~----~-~~lva~vv~~~-~~-~~~~~----~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr 997 (5163)
T PRK12316 930 -EHPWVREAAVLAVD----G-KQLVGYVVLES-EG-GDWRE----ALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDR 997 (5163)
T ss_pred -hCCCcceEEEEEcC----C-CeEEEEEEccC-CC-CCCHH----HHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhH
Confidence 99999999999875 4 78999999876 33 23334 45557888999999999999999999999999999
Q ss_pred HHHHHHHH
Q 004825 713 RVLRKQLA 720 (728)
Q Consensus 713 ~~L~~~~~ 720 (728)
++|++...
T Consensus 998 ~~L~~~~~ 1005 (5163)
T PRK12316 998 KALPAPEA 1005 (5163)
T ss_pred HhhcCccc
Confidence 99987543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-82 Score=853.65 Aligned_cols=648 Identities=15% Similarity=0.137 Sum_probs=516.0
Q ss_pred HHcCCChHHH---HHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC-----CCCccCC
Q 004825 18 EALGIPSKLA---EQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD-----PPAWIPD 87 (728)
Q Consensus 18 ~~~~~~~~~~---~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~-----~~~~~~~ 87 (728)
+++|+..+.. .++.++|+++.+...+ +||++||+++.+..+.+++.++|+.||...++..... ..+....
T Consensus 3553 lp~Rv~~~~~~~~~t~~~~L~~v~~~~~~~~~~q~~~l~~i~~~~~~~~~~~LF~t~~v~~n~~~~~~~~~~~~~~~~~~ 3632 (4334)
T PRK05691 3553 IALRVQLPAAGQRCSVRQWLQGLLDSNMELREYEYLPLVAIQECSELPKGQPLFDSLFVFENAPVEVSVLDRAQSLNASS 3632 (4334)
T ss_pred cceEEeeCCccCCCcHHHHHHHHHHHHHHHhhccCCCHHHHHHHhcCCCCCCCccEEEEeecCCcchhhhcccccccccc
Confidence 6778887654 5899999999988877 9999999999998887666655555444433321100 0011111
Q ss_pred h--hhhhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCC
Q 004825 88 P--EAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLS 164 (728)
Q Consensus 88 ~--~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (728)
. ....+|+|++.+.. ++.+...+ |++ ++|.+.+++++.++|..+|+++. +.+...+...++..+++.
T Consensus 3633 ~~~~~~~~~~l~~~~~~-~~~l~~~l~y~~-----~~~~~~~~~~l~~~f~~~L~~l~----~~~~~~~~~~~~~~~~~~ 3702 (4334)
T PRK05691 3633 DSGRTHTNFPLTAVCYP-GDDLGLHLSYDQ-----RYFDAPTVERLLGEFKRLLLALV----QGFHGDLSELPLLGEQER 3702 (4334)
T ss_pred cccccccCCCeEEEEec-CCceEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHH----hCcCCChhhcCCCCHHHH
Confidence 1 12346666664433 44566677 998 99999999999999999999983 344444555444333332
Q ss_pred -CCCCCCCCCCcc----hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004825 165 -NPGGQWLPGAFV----NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIA 239 (728)
Q Consensus 165 -~~~~~w~~~~~~----~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Va 239 (728)
..+..|+..... ..++++|.++++++||++||++.+. ++||+||+++++++|++|++.|+++|++|+
T Consensus 3703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~ 3774 (4334)
T PRK05691 3703 DFLLDGCNRSERDYPLEQSYVRLFEAQVAAHPQRIAASCLDQ--------QWSYAELNRAANRLGHALRAAGVGVDQPVA 3774 (4334)
T ss_pred HHHHHhhCCccCCCccccCHHHHHHHHHHhCCCceEEEcCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 234456654332 2456788889999999999999888 999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC-CcEEEEcCC
Q 004825 240 IDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA-PLAIVIPAK 318 (728)
Q Consensus 240 i~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~ 318 (728)
||+++|++++++||||+|+|++||||||++|.+|+.+|+++++++++|++.........+ ........ ..+.+.+
T Consensus 3775 v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-- 3850 (4334)
T PRK05691 3775 LLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARAL--LDELGCANRPRLLVWE-- 3850 (4334)
T ss_pred EEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhh--hcccccccccceeeec--
Confidence 999999999999999999999999999999999999999999999999998643211110 00000000 0111111
Q ss_pred CCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCC
Q 004825 319 GSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKAD 398 (728)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d 398 (728)
+..... .+...+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|
T Consensus 3851 ----------------~~~~~~---~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~ 3911 (4334)
T PRK05691 3851 ----------------EVQAGE---VASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEAD 3911 (4334)
T ss_pred ----------------cccccc---ccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccc
Confidence 000000 0011122345689999999999999999999999999999999999999999999
Q ss_pred EEEecCCcchhhhHHHHHHHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEE
Q 004825 399 IVAWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 476 (728)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i 476 (728)
++++.++++||.+++++|.+|+.|+++++++.. .++..+++.+++++||++.++|++++.++... ...+++||.+
T Consensus 3912 ~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~ 3988 (4334)
T PRK05691 3912 VIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWM 3988 (4334)
T ss_pred eEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEE
Confidence 999999999999999999999999999998753 35778999999999999999999999987642 2347889999
Q ss_pred EeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcc---cccccccccCCCCCceEEEEcCCCCccCCCCCce
Q 004825 477 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGM 553 (728)
Q Consensus 477 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~gi 553 (728)
++|||++++++.++|.+.+++++++|.||+||+++.++..... ......++|+|++|++++|+|+.++++|.|..
T Consensus 3989 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~-- 4066 (4334)
T PRK05691 3989 LPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGAV-- 4066 (4334)
T ss_pred EecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCCCCc--
Confidence 9999999999999998888889999999999999865543322 12234689999999999999999999999987
Q ss_pred eEEEEeccccCCCccccCccccccccccCCC-CCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHh
Q 004825 554 GELALSPLIFGASSTLLNANHYDVYFSGMPS-RNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN 632 (728)
Q Consensus 554 GEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~-~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~ 632 (728)
|||+|+|..++.+ |+++++.|+++|+.+|+ .+|.|||||||+|||++||.|+|+||+|+|||++|+||+++|||++|.
T Consensus 4067 GEL~i~G~~v~~G-Y~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~ 4145 (4334)
T PRK05691 4067 GELCVAGTGVGRG-YVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLH 4145 (4334)
T ss_pred eEEEEeccccccc-ccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHH
Confidence 9999988877654 47789999999999997 367899999999999999999999999999999999999999999995
Q ss_pred cCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhH
Q 004825 633 AVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMR 712 (728)
Q Consensus 633 ~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR 712 (728)
.+|+|.+|+|+... ...+ +.++||++... +. .+..++.+.|+++|+++||.||+|..|+.+++||+|+||||||
T Consensus 4146 -~~~~v~~a~v~~~~-~~~~-~~l~a~~~~~~-~~--~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr 4219 (4334)
T PRK05691 4146 -EQAEVREAAVAVQE-GVNG-KHLVGYLVPHQ-TV--LAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDR 4219 (4334)
T ss_pred -hCCCccEEEEEEec-CCCC-cEEEEEEeCCc-cc--ccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccH
Confidence 99999999887654 3344 78999999765 32 3344566778889999999999999999999999999999999
Q ss_pred HHHHHH
Q 004825 713 RVLRKQ 718 (728)
Q Consensus 713 ~~L~~~ 718 (728)
++|++.
T Consensus 4220 ~~L~~~ 4225 (4334)
T PRK05691 4220 KALPAL 4225 (4334)
T ss_pred hhcCCC
Confidence 999875
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-82 Score=792.14 Aligned_cols=640 Identities=17% Similarity=0.171 Sum_probs=502.1
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC-CCCccCC-----
Q 004825 16 DIEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD-PPAWIPD----- 87 (728)
Q Consensus 16 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~-~~~~~~~----- 87 (728)
..+++++..+...+|.++|+++++...+ +||+|||++|++.++..+ ..+|+ |+++|++.+. .....+.
T Consensus 295 ntlplr~~~~~~~tf~~~l~~~~~~~~~~~~h~~~p~~~i~~~l~~~~--~~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 370 (1296)
T PRK10252 295 NVLPLRVHIAAQETLPELATRLAAQLKKMRRHQRYDAEQIVRDSGRAA--GDEPL--FGPVLNIKVFDYQLDFPGVQAQT 370 (1296)
T ss_pred ceEEEEEecCCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCcc--CCCCc--eeEEEEeeecccccCcCCcccee
Confidence 3578888888899999999999998877 999999999999997443 34455 5555544110 0000000
Q ss_pred --hhhhhhccHHHHHH-HhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCC
Q 004825 88 --PEAAKVTNVGKLLQ-TRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHL 163 (728)
Q Consensus 88 --~~~~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (728)
......+||.+.+. ..++++...+ |++ ++|.+.+++++.++|..+|+++. +.|...+....+...++
T Consensus 371 ~~~~~~~~~dl~l~~~~~~~~~l~~~~~y~~-----~~f~~~~i~~l~~~~~~ll~~~~----~~p~~~i~~~~~~~~~~ 441 (1296)
T PRK10252 371 HTLATGPVNDLELALFPDEHGGLSIEILANP-----QRYDEATLIAHAERLKALIAQFA----ADPALLCGDVDILLPGE 441 (1296)
T ss_pred eecCCCccCCeEEEEEECCCCcEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHH----hCCCCChhhcCCCCHHH
Confidence 00112346666554 2345677778 988 99999999999999999999974 33444333333222211
Q ss_pred CCCCCCCCCCCc---chHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 004825 164 SNPGGQWLPGAF---VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAI 240 (728)
Q Consensus 164 ~~~~~~w~~~~~---~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai 240 (728)
......|+.... .....++|.++++++|+++|+++.+. .+||+||+++++++|++|.+.|+++|++|+|
T Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l 513 (1296)
T PRK10252 442 YAQLAQVNATAVEIPETTLSALVAQQAAKTPDAPALADARY--------QFSYREMREQVVALANLLRERGVKPGDSVAV 513 (1296)
T ss_pred HHHHHHhcCCCCCCCcCCHHHHHHHHHHhCCCCeEEEcCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 111223433221 12455678888999999999999877 8999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCC
Q 004825 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGS 320 (728)
Q Consensus 241 ~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 320 (728)
+++|++++++++|||+++|++|+|+||++|.+++.+++++++++++|++.......... . ....+..
T Consensus 514 ~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~---------~-~~~~~~~--- 580 (1296)
T PRK10252 514 ALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV---------P-DLTSLCY--- 580 (1296)
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC---------C-Cceeeec---
Confidence 99999999999999999999999999999999999999999999999987542111100 0 0000000
Q ss_pred CcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEE
Q 004825 321 SFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV 400 (728)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 400 (728)
...... ..........++++|||+|||||||.||||+++|+++++.+.+....++++++|++
T Consensus 581 -------------~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~ 642 (1296)
T PRK10252 581 -------------NAPLAP-----QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVV 642 (1296)
T ss_pred -------------cccccc-----ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEE
Confidence 000000 00001122357899999999999999999999999999999999999999999999
Q ss_pred EecCCcchhhhHHHHHHHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCC--CCCCcCeeEE
Q 004825 401 AWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID--GYDWSSIRCF 476 (728)
Q Consensus 401 l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~l~~lr~i 476 (728)
++.+|++|+.+++++|.+|+.|+++++.+.. .++..+++.|++++||++.++|+++..+++..... ...++++|.+
T Consensus 643 l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i 722 (1296)
T PRK10252 643 LQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQV 722 (1296)
T ss_pred EEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEE
Confidence 9999999999999999999999999997642 36778999999999999999999999988753222 1246789999
Q ss_pred EeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCccc------ccccccccCCCCCceEEEEcCCCCccCCCC
Q 004825 477 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ------AQSLAAFSTPAMGCKLFILGNDGCPIPQNV 550 (728)
Q Consensus 477 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~------~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~ 550 (728)
++|||++++++.+++.+.+ +++++|.||+||+++.++...... .....++|+|++|++++|+|++++++|.|+
T Consensus 723 ~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~ 801 (1296)
T PRK10252 723 FCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGV 801 (1296)
T ss_pred EEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCC
Confidence 9999999999999888765 588999999999987655433221 223568999999999999999999999999
Q ss_pred CceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHH
Q 004825 551 PGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERI 630 (728)
Q Consensus 551 ~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~ 630 (728)
. |||+|++..+..+ |+++++.|+++|..+|+.+|.+||+|||+|++++||.++|+||.|+|||++|+||+|.|||++
T Consensus 802 ~--Gel~i~g~~~~~G-Y~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~ 878 (1296)
T PRK10252 802 A--GDLYLTGIQLAQG-YLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRA 878 (1296)
T ss_pred c--eEEEecccccchh-hCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHH
Confidence 7 9999977665543 467889999999999988889999999999999999999999999999999999999999999
Q ss_pred HhcCCCCeeeeEEEeec----CCCCC-ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCC
Q 004825 631 CNAVDSNVLETAAIGVP----PPDGG-PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRT 705 (728)
Q Consensus 631 l~~~~p~V~~~~Vv~~~----~~~~g-~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t 705 (728)
|. .||+|.+++|++.. +...| ...+++|++... +. ..+..++ +++++++||.||+|..++.+++||+|
T Consensus 879 l~-~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~-~~-~~~~~~l----~~~l~~~Lp~~~~P~~~~~~~~lP~t 951 (1296)
T PRK10252 879 MQ-ALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQS-GL-PLDTSAL----QAQLRERLPPHMVPVVLLQLDQLPLS 951 (1296)
T ss_pred HH-hCccccceEEEEEeccccccCCCCccEEEEEEEcCC-CC-CCCHHHH----HHHHHhhCchhcCCcEEEEecCCCCC
Confidence 95 89999999877652 11112 247999999876 43 3454544 45688899999999999999999999
Q ss_pred CCCchhHHHHHHH
Q 004825 706 ATNKVMRRVLRKQ 718 (728)
Q Consensus 706 ~~GKvdR~~L~~~ 718 (728)
+||||||++|++.
T Consensus 952 ~~GKidr~~L~~~ 964 (1296)
T PRK10252 952 ANGKLDRKALPLP 964 (1296)
T ss_pred CCcChhHHhcCCC
Confidence 9999999999764
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-78 Score=700.39 Aligned_cols=579 Identities=26% Similarity=0.410 Sum_probs=466.1
Q ss_pred CCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCCCCeE
Q 004825 116 ISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIV 195 (728)
Q Consensus 116 ~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~pd~~A 195 (728)
+.+|..+.+++++++..||..+.+. +.|.+++.++++. ..+..+||.++..|.++++|+++++++|+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~--------~~~~~~w~~~~~~n~~~~~l~~~~~~~p~~~A 85 (637)
T PRK00174 16 MEQYKALYQESVEDPEGFWAEQAKR--LDWFKPFDTVLDW--------NAPFIKWFEDGELNVSYNCLDRHLKTRGDKVA 85 (637)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHh--cCeecCCcccccC--------CCCCCccCCCCEeEHHHHHHHHhhccCCCCeE
Confidence 3567999999999999999999887 4688888887653 14568999999999999999999999999999
Q ss_pred EEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHH
Q 004825 196 IRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEIS 275 (728)
Q Consensus 196 l~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~ 275 (728)
+++.+.. .+..+++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.
T Consensus 86 l~~~~~~--~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~ 163 (637)
T PRK00174 86 IIWEGDD--PGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALA 163 (637)
T ss_pred EEEECCC--CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHH
Confidence 9986541 12345899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEEEecceecCCcccchHhh----HhhcC--CcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccc
Q 004825 276 ARLRISKAKAIFTQDLIIRGDKSIPLYRV----IDAQA--PLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 349 (728)
Q Consensus 276 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~----~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (728)
+++++++++++|+++.....++.++.... ..... ..++++........ ........++++..... ....
T Consensus 164 ~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~ 238 (637)
T PRK00174 164 DRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD-WVEGRDLWWHELVAGAS----DECE 238 (637)
T ss_pred HHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC-cCCCCcccHHHHHhhcC----CCCC
Confidence 99999999999998876555444433321 11111 22333332211110 00112445666654321 1222
Q ss_pred cccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHH-HHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEEE
Q 004825 350 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA-DAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 427 (728)
Q Consensus 350 ~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl 427 (728)
.....+++++||+|||||||.||||+++|++++.... .....++++++|++++.++++|+.+. +.++.+|..|+++++
T Consensus 239 ~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~ 318 (637)
T PRK00174 239 PEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLM 318 (637)
T ss_pred ccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEE
Confidence 3445679999999999999999999999999865443 34455789999999999999999987 578999999999999
Q ss_pred eCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC--CCCCCcCeeEEEeecCCCCHHHHHHHHhccC--CCCe
Q 004825 428 YNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--YKPV 500 (728)
Q Consensus 428 ~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~l 500 (728)
+++. +++..+++.|++++||++.++|++++.|++.... ...++++||.+++|||++++++++++.+.++ .+++
T Consensus 319 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i 398 (637)
T PRK00174 319 FEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPI 398 (637)
T ss_pred ECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCce
Confidence 8753 3677899999999999999999999999876432 2356789999999999999999998887765 3789
Q ss_pred EecccccccccccccCCcc-cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCc-cccCccccccc
Q 004825 501 IEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASS-TLLNANHYDVY 578 (728)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~-~~~~~~~~~~~ 578 (728)
+|.||+||+++.++...+. .....+++|+|++|++++|+|++|+++|.|+. |||+|.+++.+... |+++++.+.+.
T Consensus 399 ~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~--Gel~v~g~~p~~~~gy~~~~~~~~~~ 476 (637)
T PRK00174 399 VDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEG--GNLVIKDPWPGMMRTIYGDHERFVKT 476 (637)
T ss_pred EecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCc--EEEEEcCCCCcccccccCCHHHHHHh
Confidence 9999999998755433221 12345789999999999999999999999987 99999764322222 34455544333
Q ss_pred cccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEE
Q 004825 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 658 (728)
Q Consensus 579 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a 658 (728)
|... .+| ||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|++.+++..| +.+++
T Consensus 477 ~~~~--~~g--~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~~~V~~~~Vvg~~~~~~g-~~~~a 550 (637)
T PRK00174 477 YFST--FKG--MYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKVAEAAVVGRPDDIKG-QGIYA 550 (637)
T ss_pred hhcC--CCC--EEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEE
Confidence 3111 123 9999999999999999999999999999999999999999995 9999999999999988877 89999
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 659 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 659 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
||++.+ +. . ..+++.+.|+++++++|+.|++|..|+++++||+|+|||++|++|++++...
T Consensus 551 ~vv~~~-~~-~-~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 551 FVTLKG-GE-E-PSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred EEEECC-CC-C-CCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 999887 44 2 2345667788899999999999999999999999999999999999987653
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-82 Score=846.61 Aligned_cols=651 Identities=16% Similarity=0.160 Sum_probs=522.0
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC---CC--------C
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD---PP--------A 83 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~---~~--------~ 83 (728)
.+++|+..+.+.+|.++|+++++...+ +||++||++|++.|+++|+.+++|+ ||++|++.+. .. .
T Consensus 2020 tlPlrv~~~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~~~ 2097 (4334)
T PRK05691 2020 TQVLRCQLDGQMSVSELLEQVRQTVIEGQSHQDLPFDHLVEALQPPRSAAYNPL--FQVMCNVQRWEFQQSRQLAGMTVE 2097 (4334)
T ss_pred eeeEEeecCCCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHhccccccCCCCc--eEEEEEeeccccccccCCCCceeE
Confidence 468899999999999999999998877 9999999999999999999999999 9999876211 00 0
Q ss_pred ccCChhhhhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCC
Q 004825 84 WIPDPEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENH 162 (728)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (728)
.........+|||.+.+.+.++++...+ |++ ++|++++++++..+|..+|+++. +.++..+...++..++
T Consensus 2098 ~~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~~l~~~~----~~~~~~~~~l~~~~~~ 2168 (4334)
T PRK05691 2098 YLVNDARATKFDLNLEVTDLDGRLGCCLTYSR-----DLFDEPRIARMAEHWQNLLEALL----GDPQQRLAELPLLAAA 2168 (4334)
T ss_pred eecccCCccccceEEEEEecCCcEEEEEEECc-----ccCCHHHHHHHHHHHHHHHHHHH----hhhcCChhhccCCcHH
Confidence 1111224567888888777777888888 999 99999999999999999999873 3333334333333322
Q ss_pred CCCC-CCCCCCCC----cchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCE
Q 004825 163 LSNP-GGQWLPGA----FVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSA 237 (728)
Q Consensus 163 ~~~~-~~~w~~~~----~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 237 (728)
+... ...|+... .....+++|.++++++|+++|+++.++ ++||+||+++++++|++|++.|+++|++
T Consensus 2169 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~Gv~~g~~ 2240 (4334)
T PRK05691 2169 EQQQLLDSLAGEAGEARLDQTLHGLFAAQAARTPQAPALTFAGQ--------TLSYAELDARANRLARALRERGVGPQVR 2240 (4334)
T ss_pred HHHHHHHHhCCCCcCCCcccchHHHHHHHHHHCCCCeEEEeCCe--------EEcHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 2222 22233222 123466788889999999999999877 9999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcC
Q 004825 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPA 317 (728)
Q Consensus 238 Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 317 (728)
|+|+++||+++++++|||+|+|++|||+||.+|.+++.+++++++++++|++.........+. .....+.+..
T Consensus 2241 V~l~~~~s~~~vv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~ 2313 (4334)
T PRK05691 2241 VGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGELP-------AGVARWCLED 2313 (4334)
T ss_pred EEEEeCCCHHHHHHHHHHHHhCcEeecCCCCChHHHHHHHHHhcCCCEEEeChhhhhhhcccc-------ccceeEEecc
Confidence 999999999999999999999999999999999999999999999999999875431110000 0000111110
Q ss_pred CCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCC
Q 004825 318 KGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKA 397 (728)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (728)
. ...+ .. ...........++++|||+|||||||+||||+++|+++.+.+.+....++++++
T Consensus 2314 ~--------------~~~~-~~----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKGV~~~h~~l~~~~~~~~~~~~~~~~ 2374 (4334)
T PRK05691 2314 D--------------AAAL-AA----YSDAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRAD 2374 (4334)
T ss_pred c--------------hhhh-hc----CCCCCCCCCCCCCCcEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCcc
Confidence 0 0000 00 000111122457899999999999999999999999999999998899999999
Q ss_pred CEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCC-CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEE
Q 004825 398 DIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS-PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 476 (728)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~-~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i 476 (728)
|+++++++++|+.+++++|.+|+.|+++++.+.. .++..+++.|++++||++.++|++++.|.+.... .....++|.+
T Consensus 2375 d~~l~~~~~~fd~~~~~i~~~L~~G~~lvl~~~~~~~~~~l~~~i~~~~vt~~~~tPs~~~~l~~~~~~-~~~~~~lr~i 2453 (4334)
T PRK05691 2375 DCELHFYSINFDAASERLLVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAG-QGEQLPVRMC 2453 (4334)
T ss_pred cEEEEecCccHHHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHHhhhc-cccCCCceEE
Confidence 9999999999999999999999999999997643 3678899999999999999999999999765322 2345679999
Q ss_pred EeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcc----cccccccccCCCCCceEEEEcCCCCccCCCCCc
Q 004825 477 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPG 552 (728)
Q Consensus 477 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~g 552 (728)
++|||++++++.+++.+.++...++|.||+||+++..+.+... ......++|+|++|+.++|+|++++++|.|++
T Consensus 2454 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~pi~~~~~~i~d~~~~~vp~G~~- 2532 (4334)
T PRK05691 2454 ITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQGAT- 2532 (4334)
T ss_pred EEccccCCHHHHHHHHHhCCCceEEeCcCCCcceEEEEEeecccccccCCCCCccccccCCCEEEEECCCCCCCCCCCc-
Confidence 9999999999999998888767899999999998654332211 11224579999999999999999999999987
Q ss_pred eeEEEEeccccCCCccccCccccccccccCCCC-CCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHH
Q 004825 553 MGELALSPLIFGASSTLLNANHYDVYFSGMPSR-NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 631 (728)
Q Consensus 553 iGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~-~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l 631 (728)
|||+|++..+..+ |+++++.|+++|..+|+. .|.|||+|||+|++++||.++|+||+|+|||++|+||+|+|||++|
T Consensus 2533 -GEL~i~G~~v~~G-Y~~~~~~t~~~F~~~p~~~~~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~EIE~~l 2610 (4334)
T PRK05691 2533 -GELYVGGAGLAQG-YHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRL 2610 (4334)
T ss_pred -eEEEecccccCcc-ccCChhhhhhhccCCCCCCCCCceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHHHHHHH
Confidence 9999977766543 467889999999999874 4778999999999999999999999999999999999999999999
Q ss_pred hcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchh
Q 004825 632 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 711 (728)
Q Consensus 632 ~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvd 711 (728)
. .||+|.+|+|++..++ .+ +.+++|++.............+.+.|+++++++||.||+|..|+.+++||+|+|||+|
T Consensus 2611 ~-~~p~V~~a~V~~~~~~-~~-~~lva~vv~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~v~~lP~t~~GKid 2687 (4334)
T PRK05691 2611 L-EHPAVREAVVLALDTP-SG-KQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDYMVPAHLILLDSLPLTANGKLD 2687 (4334)
T ss_pred H-hCCCcceEEEEEeeCC-CC-cEEEEEEEecccccccccccccHHHHHHHHHhhCccccCChhheeecccCCCCCCccc
Confidence 5 9999999999988443 44 7899999875411101112334567788899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 004825 712 RRVLRKQL 719 (728)
Q Consensus 712 R~~L~~~~ 719 (728)
|++|++..
T Consensus 2688 r~~L~~~~ 2695 (4334)
T PRK05691 2688 RRALPAPD 2695 (4334)
T ss_pred HHhhcCcc
Confidence 99998654
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-78 Score=699.73 Aligned_cols=580 Identities=23% Similarity=0.338 Sum_probs=465.0
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCCCCeEE
Q 004825 117 SSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVI 196 (728)
Q Consensus 117 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~pd~~Al 196 (728)
.+|+.+++++++++..||.++++. +.|.++++++++... .+..+||.++..|.++++|+++++.+|+++|+
T Consensus 2 ~~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~~-------~~~~~wf~~~~~n~~~~~l~~~~~~~p~~~A~ 72 (629)
T PRK10524 2 MSYSEFYQRSIDDPEAFWAEQARR--IDWQTPFTQVLDYSN-------PPFARWFVGGRTNLCHNAVDRHLAKRPEQLAL 72 (629)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHh--CCcccCchhhccCCC-------CCcCccCCCcEeeHHHHHHHHhhccCCCCeEE
Confidence 478999999999999999999996 479999998875422 34578999999999999999999899999999
Q ss_pred EEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Q 004825 197 RWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISA 276 (728)
Q Consensus 197 ~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~ 276 (728)
++.+. ..+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+
T Consensus 73 ~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~ 150 (629)
T PRK10524 73 IAVST--ETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAA 150 (629)
T ss_pred EEEcC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHH
Confidence 98542 1123458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEEEecceecCCcccchHhhH----hh---cCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccc
Q 004825 277 RLRISKAKAIFTQDLIIRGDKSIPLYRVI----DA---QAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 349 (728)
Q Consensus 277 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~----~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (728)
++++++++++|+++...+.++.++....+ .. ....++++....... .........+.++...... ...+
T Consensus 151 ~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~ 226 (629)
T PRK10524 151 RIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM-ARVAGRDVDYATLRAQHLG---ARVP 226 (629)
T ss_pred HHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCCcccHHHHHhcCCC---CCCC
Confidence 99999999999988766666555443221 11 122344443221110 0111223456655433211 1112
Q ss_pred cccCCCCCceEEEecCCCCCCCceEEecCcHHHHHH-HHHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEEE
Q 004825 350 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAA-ADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 427 (728)
Q Consensus 350 ~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl 427 (728)
.....+++++||+|||||||.||||+++|++++... ......++++++|++++.++++|+++. +.++.+|+.|+++++
T Consensus 227 ~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~ 306 (629)
T PRK10524 227 VEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIM 306 (629)
T ss_pred ceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEE
Confidence 233567899999999999999999999999875433 334456788999999999999999886 678999999999999
Q ss_pred eCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEe
Q 004825 428 YNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIE 502 (728)
Q Consensus 428 ~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (728)
+++. +++..++++|+++++|++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.++ ++++|
T Consensus 307 ~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~v~~ 385 (629)
T PRK10524 307 YEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALG-VPVID 385 (629)
T ss_pred ECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhcC-CCeEe
Confidence 8764 356789999999999999999999999877542 23456889999999999999999999887774 88999
Q ss_pred cccccccccccccCCc---ccccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEecccc-CCC-ccccCcccc-
Q 004825 503 YCGGTEIGGGFITGSL---LQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIF-GAS-STLLNANHY- 575 (728)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~-~~~-~~~~~~~~~- 575 (728)
.||+||++..++.... ......+++|+|++|++++|+|+ +|+++|.|+. |||+|+++.. +.. .++++++.+
T Consensus 386 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~--Gel~i~gp~~~~~~~~~~~~~~~~~ 463 (629)
T PRK10524 386 NYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEK--GVLVIEGPLPPGCMQTVWGDDDRFV 463 (629)
T ss_pred ccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCc--EEEEEcCCCChhhcCCccCChHHHH
Confidence 9999999843332221 12234578999999999999999 8999999987 9999966421 111 233444433
Q ss_pred ccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceE
Q 004825 576 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQ 655 (728)
Q Consensus 576 ~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~ 655 (728)
..+|... +.+||+|||+|++++||+++++||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++..| +.
T Consensus 464 ~~~~~~~----~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~d~~~g-~~ 537 (629)
T PRK10524 464 KTYWSLF----GRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESIS-SHPAVAEVAVVGVKDALKG-QV 537 (629)
T ss_pred HhhhccC----CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHH-hCCCcceEEEEccccCCCC-eE
Confidence 3333322 2349999999999999999999999999999999999999999996 9999999999999998777 89
Q ss_pred EEEEEEecCCCCCC---CCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 656 LTIVVVFKDSNYTP---PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 656 l~a~vv~~~~~~~~---~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+++|+++++ +... ....++.+.|+++++++|+.|++|..|+++++||+|+|||++|+.|+++++.
T Consensus 538 ~~~~vv~~~-~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 605 (629)
T PRK10524 538 AVAFVVPKD-SDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEG 605 (629)
T ss_pred EEEEEEECC-CCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 999999876 3211 1234677889999999999999999999999999999999999999998765
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=647.59 Aligned_cols=586 Identities=34% Similarity=0.504 Sum_probs=494.7
Q ss_pred CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCC-C
Q 004825 112 YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKR-S 190 (728)
Q Consensus 112 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~-~ 190 (728)
|...+.+|..|+++++++++.||...++.+.... .++.. .... .......+|++++..|.+++|++++.+. .
T Consensus 6 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~~w~~g~~ln~~~n~~~~~~~~~~ 78 (626)
T KOG1175|consen 6 YKNSLSSYREFYRFSVEDPERFWGEVAKELHWKF-PWPRC--NKDE----NKGNPFTKWFPGAFLNACYNCLDRHIKEKG 78 (626)
T ss_pred cCCCHHHHHHHHhhcccCHHHHHHHhhhhhhccc-Ccccc--cccc----ccCCCCccccccchhhhhHhhhhhhhhhcC
Confidence 6677789999999999999999999999863222 22211 1111 1235678999999999999999998644 5
Q ss_pred CCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCC
Q 004825 191 LDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270 (728)
Q Consensus 191 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~ 270 (728)
++++|+++.+.++. ....+||.||.+++.++|..|++.|+++||+|+++||+.+++++++|||.++|++.+++...++
T Consensus 79 ~~~~a~~~~~~~~~--~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs 156 (626)
T KOG1175|consen 79 GDKVAIIFEGNEGG--DTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFS 156 (626)
T ss_pred CCCcEEEEEecCCC--ceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCC
Confidence 99999999876422 2234999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccc
Q 004825 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 349 (728)
Q Consensus 271 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (728)
+..+..+++++++++|+|.+...+.++.++.. .+.+.......................+..|++.+..... ..+
T Consensus 157 ~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~----~~~ 232 (626)
T KOG1175|consen 157 AKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKASP----EHP 232 (626)
T ss_pred HHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcCC----CCC
Confidence 99999999999999999999999999988877 3333322111111111111111112236778877666543 334
Q ss_pred cccCCCCCceEEEecCCCCCCCceEEecCcH-HHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH-HHHHHhhhCcEEEE
Q 004825 350 AVEQPVEAFTNILFSSGTTGEPKAIPWTNAT-PFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LVYASLLNGASIAL 427 (728)
Q Consensus 350 ~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~-l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~L~~G~~lvl 427 (728)
+...+.+|+.+|+|||||||.||||.+++.+ ++..+.....+++++++|++++.+.++|+++.+ .++++|++|+++++
T Consensus 233 ~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl 312 (626)
T KOG1175|consen 233 CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVL 312 (626)
T ss_pred ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEE
Confidence 7788899999999999999999999999875 566666677789999999999999999999995 57889999999999
Q ss_pred eCCCC-CcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC--CCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecc
Q 004825 428 YNGSP-LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYC 504 (728)
Q Consensus 428 ~~~~~-~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (728)
+++.+ ++..+++.+.+++||++++.|+.++.|.+.... ...++++||.+.++||++.++.+.|+.+.++..++++.|
T Consensus 313 ~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~ 392 (626)
T KOG1175|consen 313 YEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETY 392 (626)
T ss_pred EcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhce
Confidence 99877 888999999999999999999999988776443 334446799999999999999999999988755799999
Q ss_pred cccccccccccCCccc-ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEecccc-CCCccccC-cc-ccccccc
Q 004825 505 GGTEIGGGFITGSLLQ-AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIF-GASSTLLN-AN-HYDVYFS 580 (728)
Q Consensus 505 G~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~-~~~~~~~~-~~-~~~~~f~ 580 (728)
|+||+|..++...+.. +..+++.|.|.+|+.+.|+|++|+.++.+. |.|+|++.+..+ +....+++ ++ ....||.
T Consensus 393 ~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~ 471 (626)
T KOG1175|consen 393 GQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFK 471 (626)
T ss_pred eeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcc
Confidence 9999999888777765 788999999999999999999999999875 569999977777 55555554 44 4577777
Q ss_pred cCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEE
Q 004825 581 GMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVV 660 (728)
Q Consensus 581 ~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~v 660 (728)
++| | +|+|||.|++|+||+++++||.||+||++|+|+.+.|||+++. .||.|.|++||+.+++..| +.++|||
T Consensus 472 k~p---g--~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~-~hp~VaEsAvVg~p~~~~g-e~v~aFv 544 (626)
T KOG1175|consen 472 KFP---G--YYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALV-EHPAVAESAVVGSPDPIKG-EVVLAFV 544 (626)
T ss_pred cCC---c--eEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHh-hCcchhheeeecCCCCCCC-eEEEEEE
Confidence 666 3 9999999999999999999999999999999999999999995 9999999999999999988 9999999
Q ss_pred EecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 661 VFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 661 v~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
++++ +. .+.++|+++|++++|+.+.++.+|+.|++++.||+|.|||+.|+.|++.+..
T Consensus 545 vl~~-g~--~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g 602 (626)
T KOG1175|consen 545 VLKS-GS--HDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASG 602 (626)
T ss_pred EEcC-CC--CChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhcc
Confidence 9998 64 7889999999999999999999999999999999999999999999999875
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-74 Score=627.83 Aligned_cols=507 Identities=24% Similarity=0.278 Sum_probs=425.3
Q ss_pred ccCCCCCC-eEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCCHHHHHHHHHHHHcCcEE
Q 004825 186 NSKRSLDD-IVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG--LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262 (728)
Q Consensus 186 ~~~~~pd~-~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~G--v~~gd~Vai~~~~s~~~vva~lA~lkaG~~~ 262 (728)
.+...+++ +++++.... .+.+||+|+..++.++|.+|.++| +++||+|+|++||++++++.+|||..+|+++
T Consensus 25 ~~~~~~~~~~~~i~~~~~-----g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~ 99 (537)
T KOG1176|consen 25 PAFVYLDRNTSLVYQDSD-----GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVL 99 (537)
T ss_pred cccccccCcceEEEecCC-----CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccc
Confidence 33344444 888877631 129999999999999999999876 8999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcC-HHHHHHhhh
Q 004825 263 VSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDIS-WLDFLERVR 341 (728)
Q Consensus 263 vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~ 341 (728)
.|++|.+.+.++.+.++++++++++++........ .........++++................. +.++.....
T Consensus 100 ~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~-----~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T KOG1176|consen 100 NPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKIS-----EATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGL 174 (537)
T ss_pred cccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHH-----HHHhhcCCceEEEecccCccccccccccccchhhccccCC
Confidence 99999999999999999999999999986542111 222222345555544311111111111111 222222211
Q ss_pred ccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhh
Q 004825 342 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLN 421 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (728)
. .. ..+...+|++.|+|||||||.||||++||++++...........++..|+.++..|++|..|++.++.+++.
T Consensus 175 ~----~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~ 249 (537)
T KOG1176|consen 175 P----DG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLA 249 (537)
T ss_pred C----cc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHh
Confidence 1 11 455667999999999999999999999999999887777677778889999999999999999888887777
Q ss_pred CcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeE
Q 004825 422 GASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVI 501 (728)
Q Consensus 422 G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (728)
|++.++.....++..+++.|++|+||+++++|.++..|++.+.....+++++|.+.+||.++++++.+++.++++...+.
T Consensus 250 ~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~ 329 (537)
T KOG1176|consen 250 GGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVI 329 (537)
T ss_pred CCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEE
Confidence 77777777777889999999999999999999999999998767778999999999999999999999999999988999
Q ss_pred ecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcccccccccc
Q 004825 502 EYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG 581 (728)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~ 581 (728)
+.||+||+++..+.+........+++|++++|.++.|.++.|+.+++++. ||||+.++....+ |++|++.|++.|..
T Consensus 330 q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~--GEI~vrg~~imkG-Y~~NpeaT~~~~~~ 406 (537)
T KOG1176|consen 330 QGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQT--GEICVRGPQVMKG-YLKNPEATKEAFDD 406 (537)
T ss_pred EeeccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCc--eEEEEECcccchh-hcCChHHHHhhccc
Confidence 99999999976665554333578899999999999999999999999997 9999966655432 57899999999975
Q ss_pred CCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEE
Q 004825 582 MPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVV 661 (728)
Q Consensus 582 ~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv 661 (728)
+ | ||+|||+|++|+||+|++++|++|+||.+|+.|+|.|||++|. .||.|.||+|++++|+..| +.++||||
T Consensus 407 ~----G--W~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~-~hP~V~eaaVvgipDe~~G-e~p~A~VV 478 (537)
T KOG1176|consen 407 D----G--WFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLL-THPDVLEAAVVGIPDEVWG-ETPAAFVV 478 (537)
T ss_pred C----C--ccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHH-hCCCccEEEEEcccccccC-CcceEEEE
Confidence 4 3 9999999999999999999999999999999999999999996 9999999999999999999 99999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhcc
Q 004825 662 FKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724 (728)
Q Consensus 662 ~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 724 (728)
.++ +. ..+++++++ .++++|++|++|..++++++||+|+||||.|+.|++.+.++..
T Consensus 479 ~k~-g~-~lte~di~~----~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~~ 535 (537)
T KOG1176|consen 479 LKK-GS-TLTEKDIIE----YVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLGS 535 (537)
T ss_pred ecC-CC-cCCHHHHHH----HHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhccc
Confidence 997 66 677777776 5888899999999999999999999999999999999988654
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-73 Score=572.29 Aligned_cols=518 Identities=21% Similarity=0.204 Sum_probs=431.0
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
+..+++.-.+++-||+.|+++...+ .++||+|+.+.++++|+.|.++|+++||||+|+.||+.+|+..+|||.+
T Consensus 51 Tigq~l~~~t~~v~dkea~Vf~~eg------~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~ 124 (596)
T KOG1177|consen 51 TIGQLLETTTERVPDKEAAVFDHEG------IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACAR 124 (596)
T ss_pred cHHHHHHHHhhccCcceEEEEeecc------chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHH
Confidence 4456677777889999999998764 3899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhh-------------cCCcEEEEcCCCCCccc
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDA-------------QAPLAIVIPAKGSSFSM 324 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~ 324 (728)
+|.+.|+++|.|+.+++++.|+..+++++|+...+....-.....++..+ .+....++-.+..
T Consensus 125 AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed---- 200 (596)
T KOG1177|consen 125 AGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED---- 200 (596)
T ss_pred hceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC----
Confidence 99999999999999999999999999999998754211000000011111 1112222222211
Q ss_pred ccCCCCcCHHHHHHhhhccccC--ccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEe
Q 004825 325 KLRDGDISWLDFLERVRKLKEN--EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAW 402 (728)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~ 402 (728)
....+...++|++...+...-. ........|++++.|.|||||||.|||+.+||-|++|+......++++...+++++
T Consensus 201 ~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~ 280 (596)
T KOG1177|consen 201 HPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICI 280 (596)
T ss_pred CcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEe
Confidence 1234667788888766542111 11234567899999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecC
Q 004825 403 PTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGE 481 (728)
Q Consensus 403 ~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe 481 (728)
..|++|.++. ..++.+|..|+|+|++..++++...++.|.++++|.++.+|+++..|++.......+++++|.++.||.
T Consensus 281 ~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa 360 (596)
T KOG1177|consen 281 PNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGA 360 (596)
T ss_pred cCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCC
Confidence 9999999995 789999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred CCCHHHHHHHHhccCCCCeEecccccccccccccCCccc--ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEe
Q 004825 482 ASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ--AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS 559 (728)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~ 559 (728)
++|+++.+.+.....-..+...||.||++...+.....+ .....++|+.+++.+..|+|..|.++|.|.+ |||++.
T Consensus 361 ~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~--Gel~iR 438 (596)
T KOG1177|consen 361 PVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTK--GELLIR 438 (596)
T ss_pred CCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCCC--ceEEEE
Confidence 999999998887655345889999999997665555433 2345689999999999999999999999998 999997
Q ss_pred ccccCCCccccC-ccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCe
Q 004825 560 PLIFGASSTLLN-ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNV 638 (728)
Q Consensus 560 ~~~~~~~~~~~~-~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V 638 (728)
+..... +||+ ++.|.+... .+|||+|||.|+++++|+++++||.+|+|+.+|++|+|.|||+.|. .||.|
T Consensus 439 GY~tMl--~Ywg~~~kT~eti~------~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~-~hp~V 509 (596)
T KOG1177|consen 439 GYSTML--GYWGEEEKTKETIG------NDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLN-KHPLV 509 (596)
T ss_pred echhhe--eecCCcccchhhcc------cccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHh-hCCCe
Confidence 653322 2444 344544333 4579999999999999999999999999999999999999999996 99999
Q ss_pred eeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHH
Q 004825 639 LETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 718 (728)
Q Consensus 639 ~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 718 (728)
.++.||+++|+..| +.++|+|-++. +.+. .-..+.|+.+++.+|..|++|+.|++++++|+|-+|||.|.+++++
T Consensus 510 ~~a~VVGV~D~R~G-E~VCA~vRLqe-~~e~---~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~ 584 (596)
T KOG1177|consen 510 KEAHVVGVPDERLG-EEVCACVRLQE-GAEG---KTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREM 584 (596)
T ss_pred eeEEEEccCCCccc-ceEEEEEEeec-cccc---cccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHH
Confidence 99999999999999 99999999987 4411 1233445557889999999999999999999999999999999999
Q ss_pred HHh
Q 004825 719 LAQ 721 (728)
Q Consensus 719 ~~~ 721 (728)
.+.
T Consensus 585 ~k~ 587 (596)
T KOG1177|consen 585 SKG 587 (596)
T ss_pred HHh
Confidence 985
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=627.08 Aligned_cols=519 Identities=25% Similarity=0.353 Sum_probs=430.3
Q ss_pred CCCCCCcchHhhhhcccccC-CCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Q 004825 169 QWLPGAFVNPAKNCLSVNSK-RSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (728)
Q Consensus 169 ~w~~~~~~~~~~~~l~~~~~-~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (728)
+|+.+...|.++++++++++ ..|+++|+++.+.. ..+++||+||.++++++|++|.+.|+++||+|+|+++|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~ 110 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRHADGGRKDKVALRYLDAS----RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPE 110 (570)
T ss_pred ccCCCCceeHHHHHHHHhhccCCCCceEEEEECCC----CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHH
Confidence 58888899999999999886 57999999986531 23489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC--CcEEEEcCCCCCcccc
Q 004825 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA--PLAIVIPAKGSSFSMK 325 (728)
Q Consensus 248 ~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~ 325 (728)
+++++|||+++|++++|+++.++.+++.+++++++++++|++......... ...+ ..++++.....
T Consensus 111 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~----- 178 (570)
T PRK04319 111 LYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA-------DDLPSLKHVLLVGEDVE----- 178 (570)
T ss_pred HHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch-------hcCCCceEEEEECCCcC-----
Confidence 999999999999999999999999999999999999999998764322110 0111 12222221110
Q ss_pred cCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCC
Q 004825 326 LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTN 405 (728)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~ 405 (728)
...+..++.++...... ........++++++|+|||||||.||||+++|+++++.+......++++++|++++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 254 (570)
T PRK04319 179 EGPGTLDFNALMEQASD----EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTAD 254 (570)
T ss_pred CCcCccCHHHHHhhcCC----cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCC
Confidence 11233456665543221 22233456789999999999999999999999999988877777889999999999999
Q ss_pred cchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCC
Q 004825 406 LGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEA 482 (728)
Q Consensus 406 ~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~ 482 (728)
++|.++. +.++.+|..|+++++.+...++..+++.|+++++|++.++|++++.|.+... ....++++||.+++||++
T Consensus 255 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~ 334 (570)
T PRK04319 255 PGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEP 334 (570)
T ss_pred hHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccC
Confidence 9999886 6789999999999998877788899999999999999999999999987542 234567899999999999
Q ss_pred CCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccc
Q 004825 483 SNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLI 562 (728)
Q Consensus 483 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~ 562 (728)
+++++.+++.+.++ .++++.||+||++..++..........+++|+|++|++++|+|++++++|+|+. |||+|.+++
T Consensus 335 l~~~~~~~~~~~~g-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~--Gel~i~~~~ 411 (570)
T PRK04319 335 LNPEVVRWGMKVFG-LPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRM--GNLAIKKGW 411 (570)
T ss_pred CCHHHHHHHHHHhC-CCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCc--eEEEEcCCC
Confidence 99999998887764 789999999999865443333223446789999999999999999999999986 999996422
Q ss_pred cCCC-ccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeee
Q 004825 563 FGAS-STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLET 641 (728)
Q Consensus 563 ~~~~-~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~ 641 (728)
.+.. .|+++++.++++|.+ | ||+|||+|++++||+++++||.||+||++|++|+|.|||++|. +||.|.++
T Consensus 412 ~~~~~GY~~~~~~~~~~~~~-----g--w~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~-~~~~V~~~ 483 (570)
T PRK04319 412 PSMMRGIWNNPEKYESYFAG-----D--WYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLM-EHPAVAEA 483 (570)
T ss_pred ChHHhHhcCCHHHhhhhhcC-----C--ceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHh-hCCCeeec
Confidence 2211 245566777777752 3 9999999999999999999999999999999999999999995 99999999
Q ss_pred EEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 642 AAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 642 ~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+|++.+++..| +.+++|++..+ +. ...+++.+.|+++++++|+.|++|..|+++++||+|++||++|++|+++..+
T Consensus 484 ~v~g~~~~~~g-~~~~a~v~~~~-~~--~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~ 559 (570)
T PRK04319 484 GVIGKPDPVRG-EIIKAFVALRP-GY--EPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELG 559 (570)
T ss_pred ceecccCcCCc-eEEEEEEEECC-CC--CCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHhC
Confidence 99999988777 89999999876 43 2334667788889999999999999999999999999999999999999765
Q ss_pred h
Q 004825 722 L 722 (728)
Q Consensus 722 ~ 722 (728)
+
T Consensus 560 ~ 560 (570)
T PRK04319 560 L 560 (570)
T ss_pred C
Confidence 4
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-71 Score=626.32 Aligned_cols=496 Identities=21% Similarity=0.222 Sum_probs=405.6
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.++ ++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 50 ~~~~~~~~~a~~~pd~~Al~~~~~--------~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~ 121 (549)
T PRK07788 50 PFAGLVAHAARRAPDRAALIDERG--------TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGK 121 (549)
T ss_pred hHHHHHHHHHHHCCCceEEEECCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 456778889999999999998776 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
+|++++|+++.++.+++.+++++++++++|+++....... .+...... ..+........ ....+...++++
T Consensus 122 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 193 (549)
T PRK07788 122 VGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLS-----ALPPDLGRLRAWGGNPDDDE---PSGSTDETLDDL 193 (549)
T ss_pred cCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHH-----hhccccccceEEEEecCccc---cCCcCcccHHHH
Confidence 9999999999999999999999999999999875431110 11111111 11111111100 011234556666
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHH
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 416 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 416 (728)
...... ...+..++++++++|||||||.||||+++|+++.+.+.+....+++..+|+++...|++|..++..++
T Consensus 194 ~~~~~~------~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 267 (549)
T PRK07788 194 IAGSST------APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLT 267 (549)
T ss_pred hcCCCC------CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHH
Confidence 543221 11223457889999999999999999999999999888887888999999999999999999998888
Q ss_pred HHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC--CCCCCcCeeEEEeecCCCCHHHHHHHHhc
Q 004825 417 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGR 494 (728)
Q Consensus 417 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 494 (728)
.++..|+++++.. ..++..+++.++++++|++.++|+++..+++.... ...++++||.+++|||++++++.+++.+.
T Consensus 268 ~~l~~G~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 346 (549)
T PRK07788 268 LAMALGSTVVLRR-RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEA 346 (549)
T ss_pred HHHHhCCEEEECC-CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHH
Confidence 8999999998874 46788999999999999999999999999886543 45568899999999999999999999887
Q ss_pred cCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccc
Q 004825 495 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 574 (728)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~ 574 (728)
++ .+++|.||+||++...+...........++|+|++|++++|+|+++++++.|+. |||+|.+.....+ |.+.+.
T Consensus 347 ~~-~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~g--Y~~~~~ 421 (549)
T PRK07788 347 FG-PVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVV--GRIFVGNGFPFEG--YTDGRD 421 (549)
T ss_pred hC-ccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCe--EEEEEeCCCcccc--ccCCCc
Confidence 75 689999999999865443322222345789999999999999999999999986 9999977654432 233222
Q ss_pred cccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004825 575 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 654 (728)
Q Consensus 575 ~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~ 654 (728)
. . + .+| ||+|||+|++++||.++|+||.||+||++|++|+|.|||++|. .||+|.+++|++.+++..| +
T Consensus 422 ~-~-~-----~~g--~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~~~~~~~g-~ 490 (549)
T PRK07788 422 K-Q-I-----IDG--LLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLA-GHPDVVEAAVIGVDDEEFG-Q 490 (549)
T ss_pred c-c-c-----cCC--ceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHH-hCCCeeEEEEECCcCcccc-c
Confidence 1 1 1 123 9999999999999999999999999999999999999999995 9999999999999888777 8
Q ss_pred EEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHH
Q 004825 655 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 718 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 718 (728)
.++++|++++ +. ..+.+++ +++++++||.|++|..|+++++||+|+|||++|++|+++
T Consensus 491 ~~~a~vv~~~-~~-~~~~~~l----~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 491 RLRAFVVKAP-GA-ALDEDAI----KDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred EEEEEEEeCC-CC-CCCHHHH----HHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 9999999876 44 3455544 446788899999999999999999999999999999764
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-70 Score=615.92 Aligned_cols=505 Identities=24% Similarity=0.269 Sum_probs=413.7
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
.....|.++++++|+++|+++.+..+ ++||+||+++++++|+.|++.|+++||+|+|+++|+++++++++||++
T Consensus 12 ~~~~~l~~~a~~~~~~~a~~~~~~~~------~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~ 85 (534)
T COG0318 12 TLASLLERAARRNPDRPALIFLGRGG------RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALR 85 (534)
T ss_pred cHHHHHHHHHHhCCCceEEEEcCCCc------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 34566888889999999999988720 399999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCCcEEEEcCCCCCcccccCCCC--cCHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAPLAIVIPAKGSSFSMKLRDGD--ISWL 334 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~ 334 (728)
+|++.+|++|.+..+++.++++++++++++++.... ... .+.........+...... ... ..+.
T Consensus 86 ~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 152 (534)
T COG0318 86 AGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA------ALLEAVAEALPVVLVVLLVGDA-------DDRLPITLE 152 (534)
T ss_pred cCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccch------hHHHHHhccCCcceEEEecccc-------cccccccHH
Confidence 999999999999999999999999999999998521 111 111111111111111100 000 2344
Q ss_pred HHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcC--CCCCCEEEecCCcchhhhH
Q 004825 335 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD--IRKADIVAWPTNLGWMMGP 412 (728)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~ 412 (728)
+....... .........++++|+|+|||||||.||||++||+|++.+.......++ +++.|+++++.|++|++|+
T Consensus 153 ~~~~~~~~---~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl 229 (534)
T COG0318 153 ALAAEGPG---PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGL 229 (534)
T ss_pred HHhhccCC---cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHH
Confidence 44222111 111112267899999999999999999999999999998888888888 8999999999999999999
Q ss_pred HH-HHHHhhhCcEEEEeCC-CCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcC-eeEEEeecCCCCHHHHH
Q 004825 413 WL-VYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSS-IRCFGSTGEASNVDEYL 489 (728)
Q Consensus 413 ~~-~~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~-lr~i~~gGe~l~~~~~~ 489 (728)
.. ++.++..|+++++.++ .+++..++..+.++++|++.++|+++..|+........++++ ||.++.||+++++++++
T Consensus 230 ~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~ 309 (534)
T COG0318 230 IVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLE 309 (534)
T ss_pred HHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHH
Confidence 64 5566999999999875 468888999999999999999999999999887666655665 99999999999999999
Q ss_pred HHHhccCCCCeEecccccccccccccCCccc-ccccccccCCCCCceEEEEcCCCC-ccCCCCCceeEEEEeccccCCCc
Q 004825 490 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQ-AQSLAAFSTPAMGCKLFILGNDGC-PIPQNVPGMGELALSPLIFGASS 567 (728)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~v~i~d~~g~-~vp~g~~giGEl~v~~~~~~~~~ 567 (728)
++.++++...+++.||+||++..++...... ....+++|+|++|++++|+|+++. ++| |.. |||+|.++.+..+
T Consensus 310 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~v--Gei~irgp~v~~G- 385 (534)
T COG0318 310 RFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEV--GEIWVRGPNVMKG- 385 (534)
T ss_pred HHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCc--eEEEEECchhhhh-
Confidence 9999987668999999999997666555543 235667799999999999998765 566 764 9999965554332
Q ss_pred cccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeec
Q 004825 568 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 647 (728)
Q Consensus 568 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~ 647 (728)
|+++++.|++.|.. .+||+|||+|++|+||++++.||.+|+||++|++|+|.|||.++. .||.|.+|+|++++
T Consensus 386 Y~~~pe~t~~~f~~------~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~-~~~~V~~aavvgvp 458 (534)
T COG0318 386 YWNRPEATAEAFDE------DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLA-EHPAVAEAAVVGVP 458 (534)
T ss_pred hcCChHHHHHhhcc------CCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHH-hCCCcceEEEEeCC
Confidence 45566888777764 239999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCCC-CCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 648 PPDGGPEQLTIVVVFKDSNYT-PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~-~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
++..| +.++|++++++ +.. ..+.+++++ +++++++.|++|+.++++++||+|++||++|+.|++.+..
T Consensus 459 d~~~G-e~~~a~v~~~~-~~~~~~~~~~i~~----~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 459 DERWG-ERVVAVVVLKP-GGDAELTAEELRA----FLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred CCccC-ceEEEEEEEcC-CCCCCCCHHHHHH----HHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 99888 99999999987 421 224555555 6777999999999999999999999999999999999887
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-69 Score=623.22 Aligned_cols=525 Identities=20% Similarity=0.168 Sum_probs=411.2
Q ss_pred CCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Q 004825 173 GAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIY 252 (728)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~ 252 (728)
........++|.++++++|+++|+++...++.....+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 21 ~~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~ 100 (632)
T PRK07529 21 RDLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFAL 100 (632)
T ss_pred hcCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 33445567889999999999999998543222223458999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcc---cc-
Q 004825 253 LAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFS---MK- 325 (728)
Q Consensus 253 lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~---~~- 325 (728)
|||+++| +++|++|.++.+++.+++++++++++|++...... ...... ......+. .++.++....... ..
T Consensus 101 lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (632)
T PRK07529 101 WGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGT-DIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAV 178 (632)
T ss_pred HHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCc-hHHHHHHHHHhcCCcceeEEEecCcccccccccccc
Confidence 9999999 57999999999999999999999999998754210 000001 11121221 1222221110000 00
Q ss_pred ------cCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCE
Q 004825 326 ------LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADI 399 (728)
Q Consensus 326 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~ 399 (728)
...+..++.+.+..... ..........++++|+++|||||||.||||+++|+++++........+++.++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~ 256 (632)
T PRK07529 179 PLIRRKAHARILDFDAELARQPG--DRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDT 256 (632)
T ss_pred cccccccccccCCHHHHHhcCCC--ccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCE
Confidence 11223455554443221 1111223346799999999999999999999999999988777777788899999
Q ss_pred EEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCC--C---cchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCe
Q 004825 400 VAWPTNLGWMMGP-WLVYASLLNGASIALYNGSP--L---GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 473 (728)
Q Consensus 400 ~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~--~---~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~l 473 (728)
+++..|++|..+. ..++.+|..|+++++.+... + ...+++.|+++++|++.++|+++..|++... ...++++|
T Consensus 257 ~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~sl 335 (632)
T PRK07529 257 VFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSL 335 (632)
T ss_pred EEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccce
Confidence 9999999999887 46889999999999975321 2 2468899999999999999999999987643 23468899
Q ss_pred eEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEE--cCCC---CccCC
Q 004825 474 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFIL--GNDG---CPIPQ 548 (728)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~--d~~g---~~vp~ 548 (728)
|.+++||+++++++.+++.+.+ +++++|.||+||+++.++..........+++|+|++++.++|+ |++| +++|.
T Consensus 336 r~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~ 414 (632)
T PRK07529 336 RYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAV 414 (632)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCC
Confidence 9999999999999999998776 5899999999999876554433333456899999999998884 7777 88999
Q ss_pred CCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHH
Q 004825 549 NVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 628 (728)
Q Consensus 549 g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE 628 (728)
|+. |||+|.+..+..+ |.+++.+...|. +.+||+|||+|++++||++++.||.||+||++|++|+|.|||
T Consensus 415 g~~--Gel~v~gp~v~~G--Y~~~~~~~~~~~------~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE 484 (632)
T PRK07529 415 DEV--GVLCIAGPNVFSG--YLEAAHNKGLWL------EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIE 484 (632)
T ss_pred CCc--eEEEEECCCcccc--ccCCcccccccc------CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHH
Confidence 986 9999976654433 345555555553 234999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCC-CCcccceEEECCCCCCCCC
Q 004825 629 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN-PLFKVSHVVPLPSLPRTAT 707 (728)
Q Consensus 629 ~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp-~~~~P~~i~~v~~lP~t~~ 707 (728)
++|. .||+|.+|+|++.+++..| +.+++||++.+ +. ..+.+++++ +++++|+ .+++|..|+++++||+|++
T Consensus 485 ~~l~-~~p~V~~a~vvg~~d~~~g-e~~~a~v~l~~-~~-~~~~~~l~~----~~~~~l~~~~~~P~~i~~v~~lP~t~~ 556 (632)
T PRK07529 485 EALL-RHPAVALAAAVGRPDAHAG-ELPVAYVQLKP-GA-SATEAELLA----FARDHIAERAAVPKHVRILDALPKTAV 556 (632)
T ss_pred HHHH-hCCCeeEEEEEeccCCCCC-ceeEEEEEEcC-CC-CCCHHHHHH----HHHHhcchhccCCcEEEEecCCCCCCC
Confidence 9996 8999999999999988777 89999999887 54 455666655 4666665 4799999999999999999
Q ss_pred CchhHHHHHHHHHh
Q 004825 708 NKVMRRVLRKQLAQ 721 (728)
Q Consensus 708 GKvdR~~L~~~~~~ 721 (728)
||++|++|++.+.+
T Consensus 557 GKi~r~~Lr~~~~~ 570 (632)
T PRK07529 557 GKIFKPALRRDAIR 570 (632)
T ss_pred CcccHHHHHHHHHH
Confidence 99999999998765
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-70 Score=635.50 Aligned_cols=480 Identities=19% Similarity=0.211 Sum_probs=392.7
Q ss_pred hhhcccccCC--CCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 180 KNCLSVNSKR--SLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 180 ~~~l~~~~~~--~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
..+|.+++++ +||++|+++. . .+||+||+++++++|++|.+.|+++|++|+|+++|++++++++|||++
T Consensus 7 ~~~~~~~a~~~~~pd~~a~~~~-~--------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~ 77 (705)
T PRK06060 7 AGLLAEQASEAGWYDRPAFYAA-D--------VVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLA 77 (705)
T ss_pred HHHHHHHHhhccCCCceEEEec-C--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 3556666654 7999999863 3 799999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
+|++++|++|.++.+++.+++++++++++|++......... . . .....++.
T Consensus 78 aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~------------~-~----------------~~~~~~~~ 128 (705)
T PRK06060 78 RGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQP------------S-R----------------VAEAAELM 128 (705)
T ss_pred hCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc------------c-c----------------cchhhhhh
Confidence 99999999999999999999999999999998743211000 0 0 00011111
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHH-HhcCCCCCCEEEecCCcchhhhH-HHH
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW-CHMDIRKADIVAWPTNLGWMMGP-WLV 415 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~-~~~ 415 (728)
....... ........++++|||+|||||||.||||+++|+++.+.+.+.. ..++++++|++++..+++|+.++ ..+
T Consensus 129 ~~~~~~~--~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 206 (705)
T PRK06060 129 SEAARVA--PGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSV 206 (705)
T ss_pred hhccccC--CCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHH
Confidence 1100000 0111234568999999999999999999999999988776654 45788999999999999999887 578
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhcc
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 495 (728)
+.+|..|+++++.+...++..+...++++++|+++++|+++..+++... ...+++||.+++|||++++++.+++.+.+
T Consensus 207 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~ 284 (705)
T PRK06060 207 WFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFF 284 (705)
T ss_pred HHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHc
Confidence 8999999999998765677788899999999999999999999986532 23578999999999999999999998888
Q ss_pred CCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcccc
Q 004825 496 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY 575 (728)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~ 575 (728)
++++++|.||+||++..+..... .....+++|+|+++++++|+|++|+++|.|+. |||+|++..+..+ |+++++.+
T Consensus 285 ~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~--GEl~i~g~~v~~G-Y~~~~~~~ 360 (705)
T PRK06060 285 GGIPILDGIGSTEVGQTFVSNRV-DEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVE--GDLWVRGPAIAKG-YWNRPDSP 360 (705)
T ss_pred CCCceEeeeeccccCceEEeccC-CCCCcCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEccchhhhh-hhCCCccc
Confidence 77899999999999865433322 22345789999999999999999999999987 9999976655432 34444432
Q ss_pred ccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceE
Q 004825 576 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQ 655 (728)
Q Consensus 576 ~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~ 655 (728)
+ .+.+||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. .||.|.+++|++.+++..+ +.
T Consensus 361 ---~------~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~a~vv~~~~~~~~-~~ 429 (705)
T PRK06060 361 ---V------ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLII-EDEAVAEAAVVAVRESTGA-ST 429 (705)
T ss_pred ---c------cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeecCccCC-ee
Confidence 1 12359999999999999999999999999999999999999999996 8999999999999887666 78
Q ss_pred EEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHH
Q 004825 656 LTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 719 (728)
Q Consensus 656 l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 719 (728)
+++|++... +. ..+. +..+.++++++++||.||+|..|+++++||+|+|||+||++|++.+
T Consensus 430 ~~a~vv~~~-~~-~~~~-~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 430 LQAFLVATS-GA-TIDG-SVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred EEEEEEecc-cc-CcCh-HHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 999999875 32 2232 2345677789999999999999999999999999999999999865
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-69 Score=606.66 Aligned_cols=486 Identities=57% Similarity=1.016 Sum_probs=374.1
Q ss_pred cCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCCcEEEEcCCCC
Q 004825 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAPLAIVIPAKGS 320 (728)
Q Consensus 242 ~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~ 320 (728)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++........++.. .+........+++...+.
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 6899999999999999999999999999999999999999999999987532211112211 111111222333321111
Q ss_pred CcccccCCCCcCHHHHHHhhhcc---ccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCC
Q 004825 321 SFSMKLRDGDISWLDFLERVRKL---KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKA 397 (728)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (728)
...........+|.++....... ......+....++++++|+|||||||.||||+++|++++..+......++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 160 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG 160 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence 00000011234566665322110 000111122356899999999999999999999999988766655566789999
Q ss_pred CEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeE
Q 004825 398 DIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRC 475 (728)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~ 475 (728)
|++++.+|++|+.+++.++.+|..|+++++.++..++..+++.|+++++|++.++|+++..|++... ....++++||.
T Consensus 161 d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~ 240 (499)
T PLN03051 161 DVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240 (499)
T ss_pred CEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheE
Confidence 9999999999999988888999999999998765677889999999999999999999999987542 33456889999
Q ss_pred EEeecCCCCHHHHHHHHhccC-CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCcee
Q 004825 476 FGSTGEASNVDEYLWLMGRAL-YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMG 554 (728)
Q Consensus 476 i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giG 554 (728)
+++|||+++++..+++.+..+ +++++|.||+||++..++..........+++|+|.+|++++|+|++|+++|.|+..+|
T Consensus 241 i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~G 320 (499)
T PLN03051 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVG 320 (499)
T ss_pred EEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcce
Confidence 999999999998887765332 3679999999998754333222223345789999999999999999999999852259
Q ss_pred EEEEeccccCCCccccCccccccccccCCCC--CCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHh
Q 004825 555 ELALSPLIFGASSTLLNANHYDVYFSGMPSR--NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN 632 (728)
Q Consensus 555 El~v~~~~~~~~~~~~~~~~~~~~f~~~p~~--~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~ 632 (728)
||+|.+++++...+|++++.++.+|..+|.. ++.+||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.
T Consensus 321 el~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~ 400 (499)
T PLN03051 321 EVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACD 400 (499)
T ss_pred EEEEecCcCCCCccccCCcccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHH
Confidence 9999887765333455555555555444443 56789999999999999999999999999999999999999999995
Q ss_pred cCCCCeeeeEEEeecCCCCCceEEEEEE---EecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCc
Q 004825 633 AVDSNVLETAAIGVPPPDGGPEQLTIVV---VFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNK 709 (728)
Q Consensus 633 ~~~p~V~~~~Vv~~~~~~~g~~~l~a~v---v~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GK 709 (728)
+.||+|.+|+|++++++..|.+.++||| ++++ +....+.++++++++++|+++|++|++|..|+++++||+|++||
T Consensus 401 ~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~-~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GK 479 (499)
T PLN03051 401 RAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKK-GFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNK 479 (499)
T ss_pred hcCCCcceEEEEEecCCCCCceEEEEEEEcceecc-cccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCcc
Confidence 2399999999999999887756789998 7765 42125678899999999999999988888899999999999999
Q ss_pred hhHHHHHHHHHh-hcccCCC
Q 004825 710 VMRRVLRKQLAQ-LDQNSKL 728 (728)
Q Consensus 710 vdR~~L~~~~~~-~~~~~~l 728 (728)
|+|++|++.+.+ ++-.+||
T Consensus 480 i~r~~L~~~~~~~~~~~~~~ 499 (499)
T PLN03051 480 LLRRVLRDQLKKELSGRSKL 499 (499)
T ss_pred HHHHHHHHHHHHhhccccCC
Confidence 999999998876 5545664
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=613.64 Aligned_cols=499 Identities=17% Similarity=0.157 Sum_probs=390.9
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...+.|.+.++++|+++|+.+...+ ++||+||.++++++|++|.+. +||+|+|+++|++++++++|||++
T Consensus 20 ~~~~~~~~~~~~~p~~~a~~~~~~~-------~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~ 89 (539)
T PRK06334 20 TVLESFLKLCSEMTTATVCWDEQLG-------KLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLL 89 (539)
T ss_pred cHHHHHHHHHHhCCCceEEEeCCCC-------cccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHh
Confidence 3446677888999999999876532 899999999999999999873 899999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhh---cCCcEEEEcCCCCCcccccCCCCcCHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDA---QAPLAIVIPAKGSSFSMKLRDGDISWL 334 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~ 334 (728)
+|++++|++|.++.+++.++|++++++++|++........ +.... ....++.++... ....+.
T Consensus 90 ~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~---------~~~~~~ 155 (539)
T PRK06334 90 SGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLA-----QTHGEDAEYPFSLIYMEEVR---------KELSFW 155 (539)
T ss_pred cCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHh-----hhhhccccccccEEEEehhh---------hhccHH
Confidence 9999999999999999999999999999999875321100 11000 111222221100 000111
Q ss_pred HHHHhhh-cccc-----CccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcch
Q 004825 335 DFLERVR-KLKE-----NEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGW 408 (728)
Q Consensus 335 ~~~~~~~-~~~~-----~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 408 (728)
+...... ...+ .........++++++|+|||||||.||||+++|+++.....+....++++++|+++++.|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h 235 (539)
T PRK06334 156 EKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFH 235 (539)
T ss_pred HhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHh
Confidence 1110000 0000 001112456799999999999999999999999999988887777888999999999999999
Q ss_pred hhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHH
Q 004825 409 MMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDE 487 (728)
Q Consensus 409 ~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~ 487 (728)
.+++ ..++.++..|+++++.....++..+++.|+++++|++.++|++++.|++.......++++||.+++||+++++++
T Consensus 236 ~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~ 315 (539)
T PRK06334 236 AYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSL 315 (539)
T ss_pred hhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHH
Confidence 9988 457899999999998765567889999999999999999999999998765445566889999999999999999
Q ss_pred HHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCC-CCccCCCCCceeEEEEeccccCCC
Q 004825 488 YLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGAS 566 (728)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~ 566 (728)
.+++.+.++++.++|.||+||++..++...........++|+|++|++++|+|++ ++++|.|+. |||+|.+..+..+
T Consensus 316 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~--Gel~v~g~~~~~G 393 (539)
T PRK06334 316 YQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGET--GLVLTRGTSLFSG 393 (539)
T ss_pred HHHHHHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCce--EEEEEecCccccc
Confidence 9999988877899999999999866554433333345689999999999999964 889999986 9999976554332
Q ss_pred ccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeee------
Q 004825 567 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLE------ 640 (728)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~------ 640 (728)
|+++++.+ .|.. .+|.+||+|||+|++++||+++|+||.||+||++|++|+|.|||++|. .||+|.+
T Consensus 394 -Y~~~~~~~--~~~~---~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~~~v~~~~~~~~ 466 (539)
T PRK06334 394 -YLGEDFGQ--GFVE---LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILM-EGFGQNAADHAGP 466 (539)
T ss_pred -ccCCcccc--ccee---eCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHH-HccCCccccccCc
Confidence 34455433 2322 125569999999999999999999999999999999999999999996 9999998
Q ss_pred eEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhh-CCCCcccceEEECCCCCCCCCCchhHHHHHHHH
Q 004825 641 TAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK-LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 719 (728)
Q Consensus 641 ~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 719 (728)
++|++.+++ . ..+++|++.. .+.++++ ++++++ ++.||+|..++++++||+|+||||||++|+++.
T Consensus 467 ~~v~~~~~~--~-~~~~~~~~~~------~~~~~~~----~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 533 (539)
T PRK06334 467 LVVCGLPGE--K-VRLCLFTTFP------TSISEVN----DILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALA 533 (539)
T ss_pred eEEEcCCCC--c-eEEEEEEecc------CChHHHH----HHHHhcCCcccccchheeeecccccccCCcccHHHHHHHH
Confidence 677776642 1 4566666532 2334444 456664 789999999999999999999999999999987
Q ss_pred Hhh
Q 004825 720 AQL 722 (728)
Q Consensus 720 ~~~ 722 (728)
.++
T Consensus 534 ~~~ 536 (539)
T PRK06334 534 KSL 536 (539)
T ss_pred HHh
Confidence 764
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=609.19 Aligned_cols=508 Identities=17% Similarity=0.134 Sum_probs=396.4
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++|+++|+++.+. ++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 9 ~~~~~~~~~~~~p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~ 80 (563)
T PLN02860 9 ICQCLTRLATLRGNAVVTISGNR--------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACA 80 (563)
T ss_pred HHHHHHHHHHhcCCceEEecCCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhc
Confidence 44667888899999999998666 8999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhH-hhcCC-c-EEEEcCCCCCcccccCCCCcCHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVI-DAQAP-L-AIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
|++++||+|.++.+++.+++++++++++++++....... .+. ..... . .++......... ........+++
T Consensus 81 Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~ 154 (563)
T PLN02860 81 GGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYE-----ELQNDRLPSLMWQVFLESPSSSVF-IFLNSFLTTEM 154 (563)
T ss_pred cEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHH-----HHhhccCCceeEEEEecCcccccc-cchhhccccch
Confidence 999999999999999999999999999999875311000 110 01111 1 111111100000 00000111111
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 415 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 415 (728)
+...... .........++++++|+|||||||.||||+++|++++.........++++++|+++...|++|+.++..+
T Consensus 155 ~~~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 231 (563)
T PLN02860 155 LKQRALG---TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 231 (563)
T ss_pred hccCccc---cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHH
Confidence 1111000 0011123457899999999999999999999999998877666667889999999999999999999888
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC--CCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
+.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|++.... ....+++||.+++||+++++++.+++.+
T Consensus 232 ~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~ 310 (563)
T PLN02860 232 LAMLMVGACHVLLPK-FDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKK 310 (563)
T ss_pred HHHHHcCceEEecCC-CCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHH
Confidence 999999999999764 5778899999999999999999999999875422 2245789999999999999999999998
Q ss_pred ccCCCCeEecccccccccccccCCccc----------------------ccccccccCCCCCceEEEEcCCCCccCCCCC
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQ----------------------AQSLAAFSTPAMGCKLFILGNDGCPIPQNVP 551 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~----------------------~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~ 551 (728)
.+++.+++|.||+||+++.++...... .....++|+|++|++++|+|++ +|+.
T Consensus 311 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~-----~g~~ 385 (563)
T PLN02860 311 LFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE-----SSRV 385 (563)
T ss_pred hcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC-----CCce
Confidence 887789999999999976443322111 0112378999999999999976 4654
Q ss_pred ceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHH
Q 004825 552 GMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 631 (728)
Q Consensus 552 giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l 631 (728)
|||+|++..+.. .|+++++.+++.|..+ +||+|||+|++++||+++|+||.||+||++|++|+|.|||++|
T Consensus 386 --Gel~v~g~~~~~-GY~~~~~~t~~~~~~~------g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l 456 (563)
T PLN02860 386 --GRILTRGPHVML-GYWGQNSETASVLSND------GWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVL 456 (563)
T ss_pred --eEEEEecCcccc-cccCCccccchhccCC------CeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHH
Confidence 999997665433 2456777777766432 3999999999999999999999999999999999999999999
Q ss_pred hcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCC---------CCHHHHHHHHHHHHHh-hCCCCcccceEEEC-C
Q 004825 632 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP---------PDLNQLRMSFNSAVQK-KLNPLFKVSHVVPL-P 700 (728)
Q Consensus 632 ~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~---------~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v-~ 700 (728)
. .||+|.+|+|++.+++..+ +.++|+|++.+ +... .......+.|++++++ +|+.||+|..|+++ +
T Consensus 457 ~-~~p~V~~~~v~~~~~~~~~-~~~~a~v~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~ 533 (563)
T PLN02860 457 S-QHPGVASVVVVGVPDSRLT-EMVVACVRLRD-GWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRK 533 (563)
T ss_pred H-hCCCcceeEEEEEecCcCC-ceEEEEEEECC-ccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEec
Confidence 5 9999999999999988777 89999999876 4200 0001112455667776 59999999988765 7
Q ss_pred CCCCCCCCchhHHHHHHHHHh
Q 004825 701 SLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 701 ~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+||+|++|||+|++|++++.+
T Consensus 534 ~lP~t~~GKi~r~~L~~~~~~ 554 (563)
T PLN02860 534 PFPLTTTGKIRRDEVRREVLS 554 (563)
T ss_pred CCCCCcccchhHHHHHHHHHH
Confidence 799999999999999999876
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-68 Score=599.96 Aligned_cols=488 Identities=19% Similarity=0.181 Sum_probs=397.9
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
....|.++++++||++|+++.++ ++||+||+++++++|++|.++|+++|++|+|+++|++++++++|||+++
T Consensus 45 ~~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~ 116 (537)
T PRK13382 45 PTSGFAIAAQRCPDRPGLIDELG--------TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRI 116 (537)
T ss_pred HHHHHHHHHHhCCCCeEEEeCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHc
Confidence 45668888999999999998765 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC--cEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
|++++|++|.++.+++.+++++++++++|++...... +. ........ ..+.++.. .....++++
T Consensus 117 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 182 (537)
T PRK13382 117 GADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSAT---VD--RALADCPQATRIVAWTDE---------DHDLTVEVL 182 (537)
T ss_pred CcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHH---HH--HHHhhccccceEEEecCC---------cccccHHHH
Confidence 9999999999999999999999999999998753210 00 11111111 11111110 012334444
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHH
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 416 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 416 (728)
...... ......+++.++++|||||||.||||+++|++++.........+.+..+++++...|++|..++..++
T Consensus 183 ~~~~~~------~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~ 256 (537)
T PRK13382 183 IAAHAG------QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLV 256 (537)
T ss_pred hhccCc------CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHH
Confidence 332111 01123468899999999999999999999999988887777778889999999999999999998889
Q ss_pred HHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC--CCCCCcCeeEEEeecCCCCHHHHHHHHhc
Q 004825 417 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGR 494 (728)
Q Consensus 417 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 494 (728)
.++..|+++++.. ..++..+++.|+++++|++..+|++++.|++.... ...+++++|.+++|||+++++++..+.+.
T Consensus 257 ~~l~~g~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 335 (537)
T PRK13382 257 LAASLACTIVTRR-RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQ 335 (537)
T ss_pred HHHhcCcEEEECC-CcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHH
Confidence 9999999998864 45788899999999999999999999999875422 23456789999999999999999999888
Q ss_pred cCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccc
Q 004825 495 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 574 (728)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~ 574 (728)
++ .+++|.||+||++..++...........++|+|++|+.++|+|++++++|.|+. |||+|.+..+..+ |. ++.
T Consensus 336 ~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~g--Y~-~~~ 409 (537)
T PRK13382 336 FG-DVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEV--GTIFVRNDTQFDG--YT-SGS 409 (537)
T ss_pred cC-CcEEecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCe--eEEEEEcCCcccC--cc-ccc
Confidence 76 679999999999865543332223346789999999999999999999999986 9999976654432 33 343
Q ss_pred cccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004825 575 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 654 (728)
Q Consensus 575 ~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~ 654 (728)
+.. |. +| ||+|||++++++||+++|+||+||+||++|++|+|.|||.+|. .||+|.+++|++.+++..| +
T Consensus 410 ~~~-~~-----~g--~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~~~v~~~~~~~~g-~ 479 (537)
T PRK13382 410 TKD-FH-----DG--FMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLA-THPDVAEAAVIGVDDEQYG-Q 479 (537)
T ss_pred hhh-cc-----CC--CEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHH-hCCCEeeEEEEccCccccC-C
Confidence 432 21 23 9999999999999999999999999999999999999999995 9999999999999887777 8
Q ss_pred EEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 655 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
.++++|++.+ +. ..+.+ .++++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 480 ~~~a~vv~~~-~~-~~~~~----~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 480 RLAAFVVLKP-GA-SATPE----TLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred EEEEEEEECC-CC-CCCHH----HHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 8999999876 43 23434 4555788899999999999999999999999999999864
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-67 Score=594.38 Aligned_cols=517 Identities=20% Similarity=0.235 Sum_probs=412.9
Q ss_pred CCCCCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH
Q 004825 167 GGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV 246 (728)
Q Consensus 167 ~~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~ 246 (728)
...|... ...+.|.+.++.+|+++|+++.+.+ .+.++.+||+||.++++++|++|++.|+++|++|+++++|++
T Consensus 18 ~~~~~~~----~l~~~l~~~a~~~p~~~A~~~~~~~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~ 91 (547)
T PRK13295 18 AGHWHDR----TINDDLDACVASCPDKTAVTAVRLG--TGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWW 91 (547)
T ss_pred CCCCcCC----CHHHHHHHHHHHCCCceEEEecCCC--ccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCh
Confidence 3567632 2456678888899999999986531 223459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcc
Q 004825 247 NSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFS 323 (728)
Q Consensus 247 ~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~ 323 (728)
++++++|||+++|++++|++|.++.+++.+++++++++++|+++..... ...... ++...... .++.+...
T Consensus 92 e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 165 (547)
T PRK13295 92 EFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGF-DHAAMARRLRPELPALRHVVVVGGD----- 165 (547)
T ss_pred HHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCc-chHHHHHHHhhhCCCcceEEEecCC-----
Confidence 9999999999999999999999999999999999999999998754210 000001 11111111 22222211
Q ss_pred cccCCCCcCHHHHHHhhhcc----ccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCE
Q 004825 324 MKLRDGDISWLDFLERVRKL----KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADI 399 (728)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~ 399 (728)
...++.++....... ...........++++|+|+|||||||.||||+++|++++..+......++++++|+
T Consensus 166 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~ 240 (547)
T PRK13295 166 -----GADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDV 240 (547)
T ss_pred -----CccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCe
Confidence 122344443221100 00111122346789999999999999999999999999988888878889999999
Q ss_pred EEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEe
Q 004825 400 VAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGS 478 (728)
Q Consensus 400 ~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~ 478 (728)
+++..|++|..++ +.++.+|..|+++++.+. .++..+++.++++++|++.++|+++..|..........+++||.+++
T Consensus 241 ~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~ 319 (547)
T PRK13295 241 ILMASPMAHQTGFMYGLMMPVMLGATAVLQDI-WDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLC 319 (547)
T ss_pred EEEecCchhhhhHHHHHHHHHHcCCeEEeCCC-CCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEE
Confidence 9999999999886 678999999999998763 56788999999999999999999999998766555667889999999
Q ss_pred ecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcc-cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEE
Q 004825 479 TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELA 557 (728)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~ 557 (728)
||+++++++.+++.+.+ +++++|.||+||++...+..... ......++|+|++|++++|+|++++++|.|+. |||+
T Consensus 320 ~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~--Gel~ 396 (547)
T PRK13295 320 AGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQI--GRLQ 396 (547)
T ss_pred ecCCCCHHHHHHHHHHh-CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCCC--CeEE
Confidence 99999999999988877 58999999999998654333221 11234688999999999999999999999987 9999
Q ss_pred EeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCC
Q 004825 558 LSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN 637 (728)
Q Consensus 558 v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~ 637 (728)
|++..+.. .|+++++.++.. .+| ||+|||+|++++||.+++.||.|++||++|++|+|.|||++|. .+|.
T Consensus 397 v~g~~~~~-gY~~~~~~t~~~------~~g--~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~-~~~~ 466 (547)
T PRK13295 397 VRGCSNFG-GYLKRPQLNGTD------ADG--WFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLY-RHPA 466 (547)
T ss_pred EEcCcccc-cccCCccccccC------CCC--CeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHH-hCCC
Confidence 97665443 245566666543 124 9999999999999999999999999999999999999999995 8999
Q ss_pred eeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHH
Q 004825 638 VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716 (728)
Q Consensus 638 V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 716 (728)
|.+++|++++++..| +.+++++++.+ +. ..+..++++ ++++ .|++||+|..++++++||+|.+||++|++|+
T Consensus 467 v~~~~v~~~~~~~~g-~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~ 539 (547)
T PRK13295 467 IAQVAIVAYPDERLG-ERACAFVVPRP-GQ-SLDFEEMVE----FLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLR 539 (547)
T ss_pred eeeEEEEeeecCCCC-cEEEEEEEeCC-CC-CCCHHHHHH----HHHhccCccccCCcEEEEeccCCCCCCccccHHHHH
Confidence 999999999888777 88999999876 43 344444444 5665 7999999999999999999999999999999
Q ss_pred HHHHh
Q 004825 717 KQLAQ 721 (728)
Q Consensus 717 ~~~~~ 721 (728)
+++++
T Consensus 540 ~~~~~ 544 (547)
T PRK13295 540 EMLRG 544 (547)
T ss_pred HHHhc
Confidence 98865
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-67 Score=596.66 Aligned_cols=505 Identities=20% Similarity=0.205 Sum_probs=402.3
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAI 255 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vva~lA~ 255 (728)
+....++++ +++|+++|+++...+ .++||+||+++++++|++|++ .|+++||+|+|+++|++++++++|||
T Consensus 41 ~~~~~l~~~--~~~~~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~ 112 (560)
T PLN02574 41 DAVSFIFSH--HNHNGDTALIDSSTG------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAV 112 (560)
T ss_pred CHHHHHhcC--cccCCCCEEEECCCC------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHH
Confidence 344556665 579999999975432 279999999999999999999 99999999999999999999999999
Q ss_pred HHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 256 lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+++|++++|++|.++.+++.++++++++++++++..... .+......++.+.... ... ........+.+
T Consensus 113 ~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~ 181 (560)
T PLN02574 113 LSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVE---------KLSPLGVPVIGVPENY-DFD-SKRIEFPKFYE 181 (560)
T ss_pred HHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHH---------HHHhcCCcEEecCccc-ccc-cCccCcccHHH
Confidence 999999999999999999999999999999999875321 1111111222221110 000 00011233444
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHH----hcCC-CCCCEEEecCCcchhh
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDI-RKADIVAWPTNLGWMM 410 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~-~~~d~~l~~~~~~~~~ 410 (728)
+...... ........++++++|+|||||||.||||+++|+++...+..... .+.. ..+++++...|++|..
T Consensus 182 ~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~ 257 (560)
T PLN02574 182 LIKEDFD----FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIY 257 (560)
T ss_pred HhhcCCc----ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHH
Confidence 4433211 11223346789999999999999999999999999887765532 2222 3567889999999999
Q ss_pred hH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC-CCCCCcCeeEEEeecCCCCHHHH
Q 004825 411 GP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI-DGYDWSSIRCFGSTGEASNVDEY 488 (728)
Q Consensus 411 ~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~-~~~~l~~lr~i~~gGe~l~~~~~ 488 (728)
++ ..++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|++.... ...+++++|.+++||++++++..
T Consensus 258 g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~ 336 (560)
T PLN02574 258 GLSLFVVGLLSLGSTIVVMRR-FDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFI 336 (560)
T ss_pred HHHHHHHHHHhcCCEEEEecC-CCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHH
Confidence 88 456788889999998864 5788999999999999999999999999876432 34568899999999999999999
Q ss_pred HHHHhccCCCCeEecccccccccccccCCc-ccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccCCC
Q 004825 489 LWLMGRALYKPVIEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGAS 566 (728)
Q Consensus 489 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~~~ 566 (728)
+++.+.++++++++.||+||++...+.... .......++|+|++|++++|+| ++|++++.|+. |||+|.+..+..
T Consensus 337 ~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~--Gei~v~g~~~~~- 413 (560)
T PLN02574 337 QDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC--GELWIQGPGVMK- 413 (560)
T ss_pred HHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCC--eEEEEECcchhh-
Confidence 999888877899999999999865443222 1223457899999999999999 67999999987 999996655443
Q ss_pred ccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEee
Q 004825 567 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 646 (728)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~ 646 (728)
.|+++++.+++.|..+ | ||+|||+|++++||+++++||.||+||++|++|++.|||++|. .||+|.+++|++.
T Consensus 414 GY~~~~~~t~~~~~~~----g--~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~V~~~~v~~~ 486 (560)
T PLN02574 414 GYLNNPKATQSTIDKD----G--WLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLI-SHPEIIDAAVTAV 486 (560)
T ss_pred hhcCChhHhhhhccCC----C--CcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHH-hCCCcceEEEEcc
Confidence 2466777777777532 3 9999999999999999999999999999999999999999996 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 647 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
+++..| +.++++|+.++ +. ..+.++ +.++++++|++|++|..++++++||+|++||++|+.|++.+.+.
T Consensus 487 ~~~~~g-~~~~a~v~~~~-~~-~~~~~~----l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~ 555 (560)
T PLN02574 487 PDKECG-EIPVAFVVRRQ-GS-TLSQEA----VINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNS 555 (560)
T ss_pred ccCCCC-cceEEEEEeCC-CC-CCCHHH----HHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhc
Confidence 888777 78999998775 43 344444 45568889999999999999999999999999999999998763
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-67 Score=595.86 Aligned_cols=511 Identities=20% Similarity=0.203 Sum_probs=414.4
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
+..++|.++++++|+++|+++.+. ++||+||.++++++|..|.+. |+++|++|+|+++|++++++++|||+
T Consensus 11 tl~~~l~~~a~~~~~~~a~~~~~~--------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 82 (546)
T PRK08314 11 SLFHNLEVSARRYPDKTAIVFYGR--------AISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAIL 82 (546)
T ss_pred CHHHHHHHHHHHcCCCcceeecCc--------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 355667788899999999999877 999999999999999999999 99999999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC-cEEEEcCCCC---Ccc---------
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP-LAIVIPAKGS---SFS--------- 323 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~---~~~--------- 323 (728)
++|++++|++|.++.+++.++++++++++++++........ ........ .+++...... ...
T Consensus 83 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (546)
T PRK08314 83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVA-----PAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRA 157 (546)
T ss_pred HcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHH-----HHhhccCcceEEEecchhhcccccccCccccccc
Confidence 99999999999999999999999999999999875432110 11111111 1111110000 000
Q ss_pred -----cccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCC
Q 004825 324 -----MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKAD 398 (728)
Q Consensus 324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d 398 (728)
.....+...|.+...... ........++++|+|+|||||||.||||+++|+++++.+......+++..+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d 232 (546)
T PRK08314 158 EPPLQALAPGGVVAWKEALAAGL-----APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPES 232 (546)
T ss_pred ccccccccccccccHHHHhcccC-----CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCc
Confidence 000112334555443211 1123345678999999999999999999999999999888887888999999
Q ss_pred EEEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEE
Q 004825 399 IVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFG 477 (728)
Q Consensus 399 ~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~ 477 (728)
++++..|++|..++ +.++.+|..|+++++.+. .++..++++++++++|++.++|+++..++........+++++|.++
T Consensus 233 ~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~ 311 (546)
T PRK08314 233 VVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR-WDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIG 311 (546)
T ss_pred eEEEEcCchHHHHHHHHHHHHHHcCCeEEecCC-CCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheee
Confidence 99999999999997 568899999999999874 4677899999999999999999999999876555556678999999
Q ss_pred eecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcC-CCCccCCCCCceeEE
Q 004825 478 STGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGEL 556 (728)
Q Consensus 478 ~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl 556 (728)
+||+++++++.+++.+.++ .++++.||+||++......... .....++|+|++|++++|+|+ ++++++.|.. |||
T Consensus 312 ~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~--Gel 387 (546)
T PRK08314 312 GGGAAMPEAVAERLKELTG-LDYVEGYGLTETMAQTHSNPPD-RPKLQCLGIPTFGVDARVIDPETLEELPPGEV--GEI 387 (546)
T ss_pred eccccCCHHHHHHHHHHcC-CcEEecccccccccceecCCCc-CCCCCccCcccCCeEEEEEeCCCCcCCCCCCc--eEE
Confidence 9999999999999988774 7899999999998654433222 234568999999999999995 5899999986 999
Q ss_pred EEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCC
Q 004825 557 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 636 (728)
Q Consensus 557 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p 636 (728)
+|.+..+.. .|+++++.+++.|..+ +|.+||+|||+|+++++|.++++||.||+||++|++|+|.|||++|. .+|
T Consensus 388 ~v~g~~~~~-gY~~~~~~t~~~f~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~-~~~ 462 (546)
T PRK08314 388 VVHGPQVFK-GYWNRPEATAEAFIEI---DGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLY-KHP 462 (546)
T ss_pred EEECCchhc-cccCChhHhhhhhhhc---CCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHH-hCc
Confidence 996655433 2456677777777643 35569999999999999999999999999999999999999999995 899
Q ss_pred CeeeeEEEeecCCCCCceEEEEEEEecCCCCC-CCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHH
Q 004825 637 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYT-PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 715 (728)
Q Consensus 637 ~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~-~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L 715 (728)
+|.+++|++.+++..+ +.+++|+++++ +.+ ..+. +.++++++++|++|++|..++++++||+|+|||++|++|
T Consensus 463 ~v~~~~v~~~~~~~~~-~~~~a~v~~~~-~~~~~~~~----~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L 536 (546)
T PRK08314 463 AIQEACVIATPDPRRG-ETVKAVVVLRP-EARGKTTE----EEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQL 536 (546)
T ss_pred chheEEEEeCCCcccC-ceeEEEEEECC-CCCCCCCH----HHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHH
Confidence 9999999999887776 88999999876 321 1222 345567889999999999999999999999999999999
Q ss_pred HHHHHhh
Q 004825 716 RKQLAQL 722 (728)
Q Consensus 716 ~~~~~~~ 722 (728)
++..++.
T Consensus 537 ~~~~~~~ 543 (546)
T PRK08314 537 QEQEKAR 543 (546)
T ss_pred HHHHhhh
Confidence 8876653
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=590.09 Aligned_cols=502 Identities=19% Similarity=0.203 Sum_probs=405.7
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+++.++++++|+++|+++.+.+ +++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 25 ~~~~l~~~~~~~~~~~a~~~~~~~------~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~ 98 (537)
T PLN02246 25 LHDYCFERLSEFSDRPCLIDGATG------RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRR 98 (537)
T ss_pred HHHHHHHHHHhCCCCeEEEecCCC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 445566777889999999875321 28999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 338 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
|++++|++|.++.+++..++++++++++|+++...... ..........++.++... .....+.++..
T Consensus 99 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~-----~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~ 165 (537)
T PLN02246 99 GAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKL-----KGLAEDDGVTVVTIDDPP--------EGCLHFSELTQ 165 (537)
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHH-----HHHhhcCCceEEEeCCCC--------CCceeHHHHhc
Confidence 99999999999999999999999999999987532110 011111111222232111 11233344332
Q ss_pred hhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHH----hcCCCCCCEEEecCCcchhhhH-H
Q 004825 339 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGP-W 413 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~ 413 (728)
... ...+.....+++++|++|||||||.||||+++|+++++.+.+... .++++++|+++...|++|.+++ .
T Consensus 166 ~~~----~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~ 241 (537)
T PLN02246 166 ADE----NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNS 241 (537)
T ss_pred CCC----CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHH
Confidence 211 112233456799999999999999999999999999887765433 4678999999999999999998 4
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
.++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+........++++|.+++||+++++++.+++.+
T Consensus 242 ~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~ 320 (537)
T PLN02246 242 VLLCGLRVGAAILIMPK-FEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRA 320 (537)
T ss_pred HHHHHHhcCCEEEEeCC-CCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHH
Confidence 57789999999999865 56788999999999999999999999998766555566789999999999999999999999
Q ss_pred ccCCCCeEecccccccccccccCCc----ccccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEeccccCCCcc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSL----LQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASST 568 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~~~ 568 (728)
.++++.+++.||+||++.+++.... ......+++|+|+++++++|+|+ .++++|.|+. |||+|.+..+..+ |
T Consensus 321 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~G-Y 397 (537)
T PLN02246 321 KLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQP--GEICIRGPQIMKG-Y 397 (537)
T ss_pred HcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCc--eEEEEECCchhcc-c
Confidence 8888889999999999865443211 11223468999999999999995 6899999987 9999966554332 4
Q ss_pred ccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecC
Q 004825 569 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 648 (728)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~ 648 (728)
+++++.++.+|.. .+||+|||+|++++||+++++||.||+||++|+||+|.|||++|. .||+|.+++|++.++
T Consensus 398 ~~~~~~~~~~~~~------~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~~~~~ 470 (537)
T PLN02246 398 LNDPEATANTIDK------DGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-SHPSIADAAVVPMKD 470 (537)
T ss_pred cCCchhhhhcccC------CCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHH-hCCCeeEEEEEcccC
Confidence 5667777766642 239999999999999999999999999999999999999999995 899999999999888
Q ss_pred CCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 649 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+..+ +.++++++..+ +. ..+.+ .|+++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 471 ~~~~-~~~~~~v~~~~-~~-~~~~~----~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 471 EVAG-EVPVAFVVRSN-GS-EITED----EIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred ccCC-ceeEEEEEeCC-CC-CCCHH----HHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 7777 78999998876 43 23444 45556888999999999999999999999999999999998753
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-67 Score=595.24 Aligned_cols=506 Identities=16% Similarity=0.158 Sum_probs=396.9
Q ss_pred hhcccccCCCCCCeEEEEeccCCC--CCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 181 NCLSVNSKRSLDDIVIRWCDEGDG--GLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~--~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..|.++++++|+++|+++.+.++. ...++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 10 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~ 89 (552)
T PRK09274 10 RHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKA 89 (552)
T ss_pred HHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHc
Confidence 456777889999999998654210 112347999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhh----cCCcEEEEcCCCCCcccccCCCCcCHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDA----QAPLAIVIPAKGSSFSMKLRDGDISWL 334 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~ 334 (728)
|++++|++|.++.+++.+++++++++++|+++... + ...... .....+.+... .......+.
T Consensus 90 G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~-----~--~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~ 155 (552)
T PRK09274 90 GAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAH-----L--ARRLFGWGKPSVRRLVTVGGR-------LLWGGTTLA 155 (552)
T ss_pred CeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHH-----H--HHHHhccCccchhheeccccc-------cccCCccHH
Confidence 99999999999999999999999999999865210 0 000000 00011111110 001122344
Q ss_pred HHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHH
Q 004825 335 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL 414 (728)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 414 (728)
++..... ..........+++++||+|||||||.||||+++|+++...+.+....++++++|++++..|+.+..
T Consensus 156 ~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---- 228 (552)
T PRK09274 156 TLLRDGA---AAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALF---- 228 (552)
T ss_pred HhcccCc---cccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhh----
Confidence 4331111 111222345678999999999999999999999999999888888888999999999888876532
Q ss_pred HHHHhhhCcEEEEeCC------CCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHH
Q 004825 415 VYASLLNGASIALYNG------SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 488 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~------~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~ 488 (728)
.+..|+++++.+. ..++..+++.|+++++|+++++|++++.|.+.......++++||.+++||+++++++.
T Consensus 229 ---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~ 305 (552)
T PRK09274 229 ---GPALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVI 305 (552)
T ss_pred ---hhhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHH
Confidence 3467888888642 2356789999999999999999999999988655455678999999999999999999
Q ss_pred HHHHhccC-CCCeEecccccccccccccCCcc---------cccccccccCCCCCceEEEEcC---------CCCccCCC
Q 004825 489 LWLMGRAL-YKPVIEYCGGTEIGGGFITGSLL---------QAQSLAAFSTPAMGCKLFILGN---------DGCPIPQN 549 (728)
Q Consensus 489 ~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~---------~~~~~~~iG~p~~~~~v~i~d~---------~g~~vp~g 549 (728)
+++.+.++ +++++|.||+||++.+++..... ......++|+|++|++++|+|+ ++++++.|
T Consensus 306 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g 385 (552)
T PRK09274 306 ERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATG 385 (552)
T ss_pred HHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCC
Confidence 99998886 37999999999998654432211 1112347999999999999984 56789999
Q ss_pred CCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHH
Q 004825 550 VPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIER 629 (728)
Q Consensus 550 ~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~ 629 (728)
+. |||+|.+..+.. .|+++++.|...|..++ .|.+||+|||+|++++||+++++||.||+||++|++|+|.|||+
T Consensus 386 ~~--Gel~v~g~~~~~-GY~~~~~~t~~~~~~~~--~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~ 460 (552)
T PRK09274 386 EI--GEIVVAGPMVTR-SYYNRPEATRLAKIPDG--QGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCER 460 (552)
T ss_pred Ce--eEEEEecCcccc-cccCChHHhhhhhcccC--CCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHH
Confidence 86 999997766543 34667777776665433 24469999999999999999999999999999999999999999
Q ss_pred HHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCC--CC
Q 004825 630 ICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRT--AT 707 (728)
Q Consensus 630 ~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t--~~ 707 (728)
+|. .||+|.+|+|++++++. + +.++++|++.+ +. ..+.+++.+++++.++.. +.++.|..++++++||+| +|
T Consensus 461 ~l~-~~p~V~~~~v~~~~~~~-~-~~~~~~v~~~~-~~-~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~~~~lP~t~~~~ 534 (552)
T PRK09274 461 IFN-THPGVKRSALVGVGVPG-A-QRPVLCVELEP-GV-ACSKSALYQELRALAAAH-PHTAGIERFLIHPSFPVDIRHN 534 (552)
T ss_pred HHH-hCcccceeEEEEeCCCC-C-ceEEEEEEccC-cc-ccchHHHhhhhHHHHHhc-CCCcceeEEeccCCCCcccccc
Confidence 995 99999999999998753 4 67889998876 54 355667888888776554 667889999999999999 79
Q ss_pred CchhHHHHHHHHHh
Q 004825 708 NKVMRRVLRKQLAQ 721 (728)
Q Consensus 708 GKvdR~~L~~~~~~ 721 (728)
|||||++|++++++
T Consensus 535 GKi~r~~L~~~~~~ 548 (552)
T PRK09274 535 AKIFREKLAVWAAK 548 (552)
T ss_pred ccccHHHHHHHHHH
Confidence 99999999998775
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=602.53 Aligned_cols=517 Identities=16% Similarity=0.113 Sum_probs=395.5
Q ss_pred HhhhhcccccCCCCCCeEEEEec-cCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCD-EGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~-~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
...++|.++++++|+++|+.+.. ..+..+.++.+||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 45 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~ 124 (651)
T PLN02736 45 TLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACS 124 (651)
T ss_pred CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 45677888899999999996531 11122345679999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcc-c--ccCCCC
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFS-M--KLRDGD 330 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~-~--~~~~~~ 330 (728)
++|+++||+++.++.+++.+++++++++++|++..... .. ......+. .++++........ . ......
T Consensus 125 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 198 (651)
T PLN02736 125 AYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLN------TLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEI 198 (651)
T ss_pred HcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHH------HHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEE
Confidence 99999999999999999999999999999999865321 11 11122221 2222211100000 0 000113
Q ss_pred cCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhh
Q 004825 331 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMM 410 (728)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 410 (728)
..|+++.+..... ........++++|+|+|||||||.||||++||++++..+.+....+++.++|++++++|++|++
T Consensus 199 ~~~~~~~~~~~~~---~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~ 275 (651)
T PLN02736 199 VTYSKLLAQGRSS---PQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIY 275 (651)
T ss_pred EEHHHHHHhcccC---CCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHH
Confidence 4566666543211 1112335689999999999999999999999999999888888888999999999999999999
Q ss_pred hHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--------------------------
Q 004825 411 GPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC-------------------------- 464 (728)
Q Consensus 411 ~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~-------------------------- 464 (728)
+.+.++.+|..|+++++.++ ++..+++.|+++++|+++++|++++.+.+...
T Consensus 276 ~~~~~~~~l~~G~~i~~~~~--~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (651)
T PLN02736 276 ERVNQIVMLHYGVAVGFYQG--DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALE 353 (651)
T ss_pred HHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99888899999999999864 56789999999999999999999988754310
Q ss_pred ---CCCC------------CC-cCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCccccccccccc
Q 004825 465 ---IDGY------------DW-SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFS 528 (728)
Q Consensus 465 ---~~~~------------~l-~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG 528 (728)
.... .+ +++|.+++||+++++++.+++.+.++ +++++.||+||+++.++.... .....+++|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG 431 (651)
T PLN02736 354 NGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLEGYGMTETSCVISGMDE-GDNLSGHVG 431 (651)
T ss_pred cCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEEEechHHhchheeccCC-CCCCCCccC
Confidence 0000 01 47999999999999999998887664 789999999999865544333 224567899
Q ss_pred CCCCCceEEEEcC-CCCc---cCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCce
Q 004825 529 TPAMGCKLFILGN-DGCP---IPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGY 604 (728)
Q Consensus 529 ~p~~~~~v~i~d~-~g~~---vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~ 604 (728)
+|++|++++|+|. ++.. ..++. .|||+|.++.+.. .|+++++.|++.|..+ | ||+|||+|++++||+
T Consensus 432 ~p~pg~~v~i~d~~~~~~~~~~~~~~--~GEl~vrgp~v~~-GY~~~~~~t~~~~~~d----g--w~~TGDlg~~d~dG~ 502 (651)
T PLN02736 432 SPNPACEVKLVDVPEMNYTSEDQPYP--RGEICVRGPIIFK-GYYKDEVQTREVIDED----G--WLHTGDIGLWLPGGR 502 (651)
T ss_pred CccCceEEEEEEccccCcccCCCCCC--CceEEecCCcccc-ccccCHHHHHhhhccC----C--CeeccceEEEcCCCc
Confidence 9999999999983 2221 12222 3999996665433 2567788888888532 3 999999999999999
Q ss_pred EEEEcccCCeeec-CceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCC---------CCCCCC---
Q 004825 605 YRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS---------NYTPPD--- 671 (728)
Q Consensus 605 l~~~GR~d~~iki-~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~---------~~~~~~--- 671 (728)
|+|+||.||+||+ +|++|+|.|||++|. .||.|.+|+|++. ..+ +.++|+|+++.. +.+..+
T Consensus 503 l~i~GR~kd~ik~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~---~~~-~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~ 577 (651)
T PLN02736 503 LKIIDRKKNIFKLAQGEYIAPEKIENVYA-KCKFVAQCFVYGD---SLN-SSLVAVVVVDPEVLKAWAASEGIKYEDLKQ 577 (651)
T ss_pred EEEEEechhheEcCCCcEechHHHHHHHh-cCCCeeEEEEEec---CCC-ceeEEEEEeCHHHHHHHHHHcCCCccCHHH
Confidence 9999999999997 699999999999995 8999999999972 234 689999998641 110011
Q ss_pred ---HHHHHHHHHHHHH-----hhCCCCcccceEEECCCCC------CCCCCchhHHHHHHHHHh
Q 004825 672 ---LNQLRMSFNSAVQ-----KKLNPLFKVSHVVPLPSLP------RTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 672 ---~~~l~~~l~~~l~-----~~Lp~~~~P~~i~~v~~lP------~t~~GKvdR~~L~~~~~~ 721 (728)
..++++.|.+.+. ++|+.|++|..|+++++.| +|++||++|++|++.+++
T Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~ 641 (651)
T PLN02736 578 LCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAK 641 (651)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHH
Confidence 1223333333333 2599999999999999886 799999999999998876
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-68 Score=523.18 Aligned_cols=503 Identities=18% Similarity=0.203 Sum_probs=421.9
Q ss_pred hhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 004825 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (728)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG 259 (728)
.+.|.++|+++||++||+++++ .|||+||+++++++|..|+++||++||+|.+.+||..+++++++|.+|+|
T Consensus 31 ~d~L~~~A~~~pdriAv~d~~~--------~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlG 102 (542)
T COG1021 31 TDILTDHAARYPDRIAVIDGER--------RLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLG 102 (542)
T ss_pred HHHHHHHHhhcCCceEEecCcc--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcC
Confidence 4568889999999999999988 89999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 260 ~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
++.|.--|+....+|.+..+.+.++.+|.++.... ...-++. +.+...+. +.+++..+.... ...+..+.
T Consensus 103 v~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~g-Fd~~~~ar~~~a~~~tlr~v~v~ge~~~~-------~~~~~~~~ 174 (542)
T COG1021 103 VAPVLALPSHRASELGAFASQIEAALLIVARQHSG-FDYRPFARELVAKHPTLRHVIVAGEAEHP-------SVLEAALC 174 (542)
T ss_pred cchhhccchhhHHHHHHHHHhhcchheeechhhcc-cCcHHHHHHHHhhCCcceEEEEccCCCCc-------chhhhhhh
Confidence 99999999999999999999999999999875421 1112222 34444444 333333221111 11111111
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH--HHH
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP--WLV 415 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~~ 415 (728)
... ....+..+.+++++||...+.||||.||-+..+|.....++....+.++++..+++++..|..|.+.+ -.+
T Consensus 175 ~~a----~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~ 250 (542)
T COG1021 175 HPA----GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGA 250 (542)
T ss_pred Ccc----ccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcch
Confidence 111 11222355678889999999999999999999999988888888888999999999999999888776 578
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhcc
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 495 (728)
++.+++|+++|+.+. ++++....+|++++||+..++|.+...|++.......+++|||.+-+||..+++++.+++...+
T Consensus 251 LGv~~agG~VVla~~-psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l 329 (542)
T COG1021 251 LGVFLAGGTVVLAPD-PSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL 329 (542)
T ss_pred hheeeeccEEEECCC-CCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhh
Confidence 899999999999753 6778889999999999999999999999999888889999999999999999999999998877
Q ss_pred CCCCeEecccccccccccccCCcccccccccccCCC-CCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccc
Q 004825 496 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 574 (728)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~ 574 (728)
+ |.+-+.+|+.|.-+.++--....+.-..+-|+|+ |.-+++|+|++|++|++|++ |+|...++|--.+ ||.-++.
T Consensus 330 g-C~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~--G~LltRGPYTirG-Yyrap~H 405 (542)
T COG1021 330 G-CQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEV--GELLTRGPYTIRG-YYRAPEH 405 (542)
T ss_pred C-chHHHHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCc--ceeeecCCeeeee-eccCchh
Confidence 5 9999999999976654432222222345789986 67899999999999999997 9999977664332 4667788
Q ss_pred cccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004825 575 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 654 (728)
Q Consensus 575 ~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~ 654 (728)
++..|..+. +|+|||++++++||+|.+.||.+|||+.+|++|-.+|||+.|+ .||.|.+|++|+.+|+-.| +
T Consensus 406 Na~aF~a~G------FYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL-~HP~V~~AAlVampDelLG-E 477 (542)
T COG1021 406 NARAFDADG------FYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLL-RHPAVHDAALVAMPDELLG-E 477 (542)
T ss_pred hhhccCcCC------ceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHh-hCchhhhhhhhcCchhhcC-c
Confidence 888898653 8999999999999999999999999999999999999999997 9999999999999999999 9
Q ss_pred EEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 655 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+.|||||.++ . .....+|+++|.+ ..|..|++|+.|.+++++|+|+-||||+|+|++.+..
T Consensus 478 ksCAfiv~~~-~--~~~~~qlr~~L~~---~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~ 538 (542)
T COG1021 478 KSCAFIVVKE-P--PLRAAQLRRFLRE---RGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLAS 538 (542)
T ss_pred ceeEEEEecC-C--CCCHHHHHHHHHH---cchhhhcCCcceeecccCCCcccccccHHHHHHHhhh
Confidence 9999999987 2 3677888887654 5788999999999999999999999999999998865
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-66 Score=590.09 Aligned_cols=507 Identities=19% Similarity=0.193 Sum_probs=402.2
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
..+.|.++++++|+++|+++.++ .+||+||.++++++|++|.+ .|+++||+|+|+++|++++++++|||++
T Consensus 26 ~~~~l~~~a~~~p~~~al~~~~~--------~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~ 97 (562)
T PRK05677 26 IQAVLKQSCQRFADKPAFSNLGK--------TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMR 97 (562)
T ss_pred HHHHHHHHHHhCCCCeeEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 44667778888999999998766 89999999999999999998 5999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcc--------------
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFS-------------- 323 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------- 323 (728)
+|++++|++|.++.+++.+++++++++++|+++....... +.........+++........
T Consensus 98 ~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (562)
T PRK05677 98 AGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAE-----KVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHV 172 (562)
T ss_pred cCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHH-----HhhhccCcceeEEecccccccchhhhhcccchhhc
Confidence 9999999999999999999999999999999764321100 111111111111111000000
Q ss_pred -----cccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcC--CCC
Q 004825 324 -----MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD--IRK 396 (728)
Q Consensus 324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~ 396 (728)
.........+.+.+..... .........++++++|+|||||||.||||+++|+++...+......+. +..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~ 249 (562)
T PRK05677 173 KKMVPAYHLPQAVKFNDALAKGAG---QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNE 249 (562)
T ss_pred cccccccCCcccccHHHHHhcCCC---CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCC
Confidence 0000112233443332211 111223456799999999999999999999999999877665544433 333
Q ss_pred -CCEEEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCee
Q 004825 397 -ADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 474 (728)
Q Consensus 397 -~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr 474 (728)
.+++++..|+.|..++ +.++.++..|++.++.+...++..+++.|+++++|++..+|+++..++.........++++|
T Consensus 250 ~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr 329 (562)
T PRK05677 250 GCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALK 329 (562)
T ss_pred CccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhce
Confidence 4678899999999987 56778889999888877656778899999999999999999999999876544445678999
Q ss_pred EEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCcee
Q 004825 475 CFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMG 554 (728)
Q Consensus 475 ~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giG 554 (728)
.+++||+++++++.+++.+.+ ++++++.||+||++..+..... .....+++|+|++++.++|+|++++++|.|+. |
T Consensus 330 ~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~--G 405 (562)
T PRK05677 330 LTLSGGMALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPS-QAIQVGTIGIPVPSTLCKVIDDDGNELPLGEV--G 405 (562)
T ss_pred EEEEcCccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCc-cCCCCCccCccCCCCEEEEECCCCCCCCCCCC--e
Confidence 999999999999998888765 4899999999998865543332 23345789999999999999999999999986 9
Q ss_pred EEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcC
Q 004825 555 ELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAV 634 (728)
Q Consensus 555 El~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~ 634 (728)
||+|.+..+.. .|+++++.+++.|..+ .||+|||+|++++||.+++.||.||+||++|++|+|.|||++|. .
T Consensus 406 el~v~g~~~~~-gY~~~~~~t~~~~~~~------g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~-~ 477 (562)
T PRK05677 406 ELCVKGPQVMK-GYWQRPEATDEILDSD------GWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLA-A 477 (562)
T ss_pred EEEEecCccch-hhcCCchhhhhccCCC------CcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHH-h
Confidence 99997665543 2466778888777532 39999999999999999999999999999999999999999995 9
Q ss_pred CCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHH
Q 004825 635 DSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRV 714 (728)
Q Consensus 635 ~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~ 714 (728)
||+|.+++|++++++..+ +.++++++.++ +. ..+.+++++ +++++|++|++|..|+++++||+|+|||++|++
T Consensus 478 ~~~v~~~~v~g~~~~~~g-~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~ 550 (562)
T PRK05677 478 LPGVLQCAAIGVPDEKSG-EAIKVFVVVKP-GE-TLTKEQVME----HMRANLTGYKVPKAVEFRDELPTTNVGKILRRE 550 (562)
T ss_pred CCCccEEEEEeccCccCC-ceEEEEEEeCC-CC-CCCHHHHHH----HHHHhhhhccCCcEEEEeccCCCCCcccccHHH
Confidence 999999999999888777 78899998775 43 345555544 677889999999999999999999999999999
Q ss_pred HHHHHH
Q 004825 715 LRKQLA 720 (728)
Q Consensus 715 L~~~~~ 720 (728)
|+++..
T Consensus 551 L~~~~~ 556 (562)
T PRK05677 551 LRDEEL 556 (562)
T ss_pred HHHHHH
Confidence 998664
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=590.08 Aligned_cols=502 Identities=20% Similarity=0.257 Sum_probs=393.5
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+.|.++++++|+++|+++.+.+ ..+||+||+++++++|+.|.+.|+++|++|+|+++|++++++++|||+++
T Consensus 16 ~~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~ 89 (540)
T PRK05857 16 VLDRVFEQARQQPEAIALRRCDGT------SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKL 89 (540)
T ss_pred hHHHHHHHHhhCCCcEEEeecCCC------ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 345567788999999999865431 27999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 338 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
|++++|+++.++.+++.+++++++++++|+++........+. ..... ...+.++..... ...... ..
T Consensus 90 G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~--------~~~~~~-~~ 156 (540)
T PRK05857 90 GAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVP--EALHS--IPVIAVDIAAVT--------RESEHS-LD 156 (540)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcccccc--ccccc--cceeEeeccccc--------cccccc-cc
Confidence 999999999999999999999999999999886432111111 00000 011122111000 000000 00
Q ss_pred hhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHH----HhcCCCCCCEEEecCCcchhhhHHH
Q 004825 339 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW----CHMDIRKADIVAWPTNLGWMMGPWL 414 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~ 414 (728)
. ..........+++++|++|||||||.||||+++|+++.+...... ..+++..+++++...|++|+.+++.
T Consensus 157 ~-----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~ 231 (540)
T PRK05857 157 A-----ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWW 231 (540)
T ss_pred c-----cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHH
Confidence 0 000112334678999999999999999999999999877654322 1245667889999999999999988
Q ss_pred HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhc
Q 004825 415 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 494 (728)
.+.+++.|+++++.+ .++..+++.|++++||++.++|++++.|++.......+++++|.+++||++++....+++ +.
T Consensus 232 ~~~~l~~G~~~v~~~--~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~-~~ 308 (540)
T PRK05857 232 ILTCLMHGGLCVTGG--ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFI-EA 308 (540)
T ss_pred HHHHhhcceeEEecC--CChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHH-HH
Confidence 889999999987643 466789999999999999999999999988765555678999999999999987776544 44
Q ss_pred cCCCCeEecccccccccccccCCccc----ccccccccCCCCCceEEEEcCCCCc-c-----CCCCCceeEEEEeccccC
Q 004825 495 ALYKPVIEYCGGTEIGGGFITGSLLQ----AQSLAAFSTPAMGCKLFILGNDGCP-I-----PQNVPGMGELALSPLIFG 564 (728)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~v~i~d~~g~~-v-----p~g~~giGEl~v~~~~~~ 564 (728)
+ ++++++.||+||++.......... ....+++|+|++|++++|+|++++. + +.|+. |||+|.+..+.
T Consensus 309 ~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~--Gel~v~g~~~~ 385 (540)
T PRK05857 309 T-GVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASF--GTLWIKSPANM 385 (540)
T ss_pred h-CCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCc--ceEEEeCcchh
Confidence 4 589999999999985433222111 1235789999999999999988763 3 34554 99999766543
Q ss_pred CCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEE
Q 004825 565 ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAI 644 (728)
Q Consensus 565 ~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv 644 (728)
.+ |+++++.+.+.|.+ | ||+|||+|++++||+++++||.|++||++|++|+|.|||++|. .||+|.+|+|+
T Consensus 386 ~G-Y~~~~~~t~~~~~~-----g--~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~-~~~~V~~~~v~ 456 (540)
T PRK05857 386 LG-YWNNPERTAEVLID-----G--WVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAE-GVSGVREAACY 456 (540)
T ss_pred hh-hhCCccchhhhcCC-----C--ceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHH-hCCCeeEEEEE
Confidence 32 45677777777742 3 9999999999999999999999999999999999999999995 99999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 645 GVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+.+++..+ +.++++++..+ ..+....+++++.+.+.+++.+++|++|..++++++||+|++||++|++|++.++.
T Consensus 457 ~~~~~~~~-~~~~~~vv~~~-~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~ 531 (540)
T PRK05857 457 EIPDEEFG-ALVGLAVVASA-ELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATA 531 (540)
T ss_pred ecCccccc-cceEEEEEeCC-CCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhh
Confidence 99887766 67778877765 32122346788888888999999999999999999999999999999999999875
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-66 Score=581.57 Aligned_cols=480 Identities=18% Similarity=0.209 Sum_probs=394.4
Q ss_pred hhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Q 004825 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (728)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~ 260 (728)
+.|.++++++|+++|+++.+. ++||+||.++++++|++|.+.|. +|++|+|+++|++++++++|||+++|+
T Consensus 5 ~~~~~~a~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~ 75 (487)
T PRK07638 5 KEYKKHASLQPNKIAIKENDR--------VLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGW 75 (487)
T ss_pred HHHHHHHHhCCCCeEEecCCc--------EeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCe
Confidence 446778889999999998776 99999999999999999999985 899999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhh
Q 004825 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERV 340 (728)
Q Consensus 261 ~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (728)
+++|+++.++.+++..++++++++++|++........ .....++.+. .+.+.....
T Consensus 76 ~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---------~~~~~~~~~~---------------~~~~~~~~~ 131 (487)
T PRK07638 76 TCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLP---------DEEGRVIEID---------------EWKRMIEKY 131 (487)
T ss_pred EEEecCccCCHHHHHHHHHhCCCCEEEEecccccchh---------hccceEEEeh---------------hhhhhhhhc
Confidence 9999999999999999999999999999875321110 0001111110 111111111
Q ss_pred hccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhh
Q 004825 341 RKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLL 420 (728)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (728)
. ..........+++++|+|||||||.||||+++|++++..+......++++++|+++...++.|+.+++.++.++.
T Consensus 132 ~----~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~ 207 (487)
T PRK07638 132 L----PTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLY 207 (487)
T ss_pred c----ccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHc
Confidence 0 011112233577899999999999999999999999988888878889999999999999999998888899999
Q ss_pred hCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCe
Q 004825 421 NGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV 500 (728)
Q Consensus 421 ~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (728)
.|+++++.+. .++..+++.|+++++|++.++|+++..|.+... . ..+.+.++++|+.++.+..+++.+.++++++
T Consensus 208 ~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 282 (487)
T PRK07638 208 VGQTVHLMRK-FIPNQVLDKLETENISVMYTVPTMLESLYKENR---V-IENKMKIISSGAKWEAEAKEKIKNIFPYAKL 282 (487)
T ss_pred cCcEEEEcCC-CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-CCceeEEEEcCCCCCHHHHHHHHHHcCCCeE
Confidence 9999998754 678899999999999999999999999987632 2 3455667889999999999999988888999
Q ss_pred EecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccc
Q 004825 501 IEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFS 580 (728)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~ 580 (728)
+|.||+||++..+............++|+|++|+.++|+|++|+++|+|+. |||+|.+.....+ |+.+++.+.+.+.
T Consensus 283 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--Gel~v~~~~~~~g-y~~~~~~~~~~~~ 359 (487)
T PRK07638 283 YEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEI--GTVYVKSPQFFMG-YIIGGVLARELNA 359 (487)
T ss_pred EEEecCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCC--eEEEEecccceee-ecCCHHHHhhhcc
Confidence 999999999876554433333456789999999999999999999999986 9999976655432 3445554444322
Q ss_pred cCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEE
Q 004825 581 GMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVV 660 (728)
Q Consensus 581 ~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~v 660 (728)
+| ||+|||+|++++||+++++||+||+||++|.+|+|.|||++|. .||+|.+|+|++.+++..| +.+++++
T Consensus 360 -----~g--~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v 430 (487)
T PRK07638 360 -----DG--WMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLH-EHPAVDEIVVIGVPDSYWG-EKPVAII 430 (487)
T ss_pred -----CC--cEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEecCchhcC-CeeEEEE
Confidence 23 9999999999999999999999999999999999999999996 8999999999999887777 7788887
Q ss_pred EecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhcc
Q 004825 661 VFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724 (728)
Q Consensus 661 v~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 724 (728)
+.. .+..+++ +.+++.|+.|++|..++++++||+|++||++|++|++++++..+
T Consensus 431 ~~~------~~~~~l~----~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~ 484 (487)
T PRK07638 431 KGS------ATKQQLK----SFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQEK 484 (487)
T ss_pred ECC------CCHHHHH----HHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcccc
Confidence 632 2344444 46778899999999999999999999999999999999987554
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=600.88 Aligned_cols=516 Identities=14% Similarity=0.107 Sum_probs=389.6
Q ss_pred hHhhhhcccccCCCCCCeEEEEecc-CCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDE-GDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAI 255 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~ 255 (728)
+...++|.++++++||++|+.+... .+..+.++.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++|||
T Consensus 45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~ 124 (666)
T PLN02614 45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124 (666)
T ss_pred CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3556778888999999999986421 111133456899999999999999999999999999999999999999999999
Q ss_pred HHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC------CcEEEEcCCCCCccc-cc--
Q 004825 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA------PLAIVIPAKGSSFSM-KL-- 326 (728)
Q Consensus 256 lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~-~~-- 326 (728)
+++|+++||++|.++.+++.+++++++++++|+++.... .+..... ..++.+......... ..
T Consensus 125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~ 196 (666)
T PLN02614 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKIS--------ELFKTCPNSTEYMKTVVSFGGVSREQKEEAETF 196 (666)
T ss_pred HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHH--------HHHHhcccccccceEEEEeCCCChHHhhhhhhc
Confidence 999999999999999999999999999999999864211 1111111 122222211000000 00
Q ss_pred CCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhc-----CCCCCCEEE
Q 004825 327 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-----DIRKADIVA 401 (728)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l 401 (728)
......+.++....... ........++++|+|+|||||||.||||++||+|++..+.+....+ +++++|+++
T Consensus 197 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l 273 (666)
T PLN02614 197 GLVIYAWDEFLKLGEGK---QYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYL 273 (666)
T ss_pred CcEEEEHHHHHhhcccC---CCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEE
Confidence 00123566655433210 1112234679999999999999999999999999998776654433 578899999
Q ss_pred ecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC----------------
Q 004825 402 WPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI---------------- 465 (728)
Q Consensus 402 ~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~---------------- 465 (728)
+++|++|.++....+.++..|+++++.+ .++..+++.|+++++|+++++|++++.+......
T Consensus 274 ~~lPl~H~~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a 351 (666)
T PLN02614 274 SYLPLAHIFDRVIEECFIQHGAAIGFWR--GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSA 351 (666)
T ss_pred EeccHHHHHHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999988765667788999999875 3678899999999999999999999987642100
Q ss_pred ---------------CCC-------------CC-cCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccC
Q 004825 466 ---------------DGY-------------DW-SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITG 516 (728)
Q Consensus 466 ---------------~~~-------------~l-~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 516 (728)
... .+ ++||.+++||+++++++ .++.+.+++++++|.||+||+++..+..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 430 (666)
T PLN02614 352 FSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVS 430 (666)
T ss_pred HHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeee
Confidence 000 01 58999999999999875 5566666668999999999987644333
Q ss_pred CcccccccccccCCCCCceEEEEc-CC--CCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEe
Q 004825 517 SLLQAQSLAAFSTPAMGCKLFILG-ND--GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRH 593 (728)
Q Consensus 517 ~~~~~~~~~~iG~p~~~~~v~i~d-~~--g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~T 593 (728)
.+......+++|+|+||++++|+| ++ +++++.|+. |||+|.++.+.. .||++++.|++.|. +| ||+|
T Consensus 431 ~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~--GEl~vrGp~v~~-GY~~~pe~T~~~f~-----dG--w~~T 500 (666)
T PLN02614 431 LPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPR--GEICIRGKTLFS-GYYKREDLTKEVLI-----DG--WLHT 500 (666)
T ss_pred ccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCC--ceEEEcCCcccc-cccCCHHHhhhhhc-----cC--Cccc
Confidence 332223457999999999999998 33 478899986 999996665443 25678888988884 24 9999
Q ss_pred CceEEEecCceEEEEcccCCeeec-CceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCC-------
Q 004825 594 GDVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS------- 665 (728)
Q Consensus 594 GDl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~------- 665 (728)
||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|. .||.|.+|+|++.... ..++|+|++...
T Consensus 501 GDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~-~~p~V~~~~V~g~~~~----~~l~alvv~~~~~~~~~~~ 575 (666)
T PLN02614 501 GDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYG-EVQAVDSVWVYGNSFE----SFLVAIANPNQQILERWAA 575 (666)
T ss_pred ceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHh-cCCCeeEEEEEecCCc----ceEEEEEeCCHHHHHHHHH
Confidence 999999999999999999999996 799999999999995 9999999999985421 479999987541
Q ss_pred --CCCC-----CCHHHHHHHHHHHH-----HhhCCCCcccceEEECCC-C-----CCCCCCchhHHHHHHHHHh
Q 004825 666 --NYTP-----PDLNQLRMSFNSAV-----QKKLNPLFKVSHVVPLPS-L-----PRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 666 --~~~~-----~~~~~l~~~l~~~l-----~~~Lp~~~~P~~i~~v~~-l-----P~t~~GKvdR~~L~~~~~~ 721 (728)
+... ....++++.+.+.+ ++.|+.|.+++.|..+++ + -+||++|+.|+.+.+.+++
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~ 649 (666)
T PLN02614 576 ENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQS 649 (666)
T ss_pred hcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHH
Confidence 1100 11133444444444 457999999999988774 3 3999999999999888876
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=579.64 Aligned_cols=502 Identities=24% Similarity=0.230 Sum_probs=411.8
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...+.|.+.++.+|+++|+++.+. ++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||++
T Consensus 6 ~i~~~l~~~~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~ 77 (513)
T PRK07656 6 TLPELLARAARRFGDKEAYVFGDQ--------RLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALK 77 (513)
T ss_pred cHHHHHHHHHHHCCCCeEEEeCCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 345667778889999999999776 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+|++++|+++.++.+++..++++++++++++++....... ........ ..++........ .......|.+
T Consensus 78 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 149 (513)
T PRK07656 78 AGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDY-----SATTRLPALEHVVICETEEDDP---HTEKMKTFTD 149 (513)
T ss_pred cCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHH-----HHHhccCCccEEEEEcCccccc---CccccccHHH
Confidence 9999999999999999999999999999999875421110 11111111 122222111110 0112345666
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WL 414 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~ 414 (728)
+...... ........++++++|+|||||||.||+|.++|+++.+.+......++++++|++++..|++|++++ ..
T Consensus 150 ~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (513)
T PRK07656 150 FLAAGDP----AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAG 225 (513)
T ss_pred HHhcCCC----CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHH
Confidence 6543221 122344677999999999999999999999999999988888888899999999999999999998 45
Q ss_pred HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhc
Q 004825 415 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 494 (728)
++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+........++++|.+++||+++++++.+++.+.
T Consensus 226 ~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~ 304 (513)
T PRK07656 226 VNAPLMRGATILPLPV-FDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESE 304 (513)
T ss_pred HHHHHHcCceEEecCc-CCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHH
Confidence 8899999999988653 567889999999999999999999999998766666678899999999999999999999888
Q ss_pred cCCCCeEecccccccccccccCCcccccc--cccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCc
Q 004825 495 ALYKPVIEYCGGTEIGGGFITGSLLQAQS--LAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~--~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
++...++|.||+||+++..+.+....... ..++|+|++|++++|+|+++++++.|.. |||++.+.....+ |++++
T Consensus 305 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~g-y~~~~ 381 (513)
T PRK07656 305 LGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEV--GELLVRGPNVMKG-YYDDP 381 (513)
T ss_pred cCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCc--eEEEEEcchhhhh-hcCCH
Confidence 76338999999999987665544332222 5789999999999999999999999986 9999976654432 34555
Q ss_pred cccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 573 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
+.+...|..+ | ||+|||+|++++||.++++||.||+||++|.+|+|.|||++|. .+|+|.+++|++.+++..|
T Consensus 382 ~~~~~~~~~~----~--~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~i~~~~v~~~~~~~~g 454 (513)
T PRK07656 382 EATAAAIDAD----G--WLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLY-EHPAVAEAAVIGVPDERLG 454 (513)
T ss_pred HHHhhhhccC----C--ceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHH-hCCCeeEEEEEecCCcccC
Confidence 6666555422 2 9999999999999999999999999999999999999999995 8999999999999887777
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
+.++++++.+. +. ..+..++++ ++++.||++++|..++++++||+|++||++|++|++
T Consensus 455 -~~~~~~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 455 -EVGKAYVVLKP-GA-ELTEEELIA----YCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred -ceEEEEEEECC-CC-CCCHHHHHH----HHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 78899998875 33 345554444 678889999999999999999999999999999975
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-65 Score=583.50 Aligned_cols=516 Identities=18% Similarity=0.193 Sum_probs=415.3
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...+.|.+.++++|+++|+++.+.+ .++||+||.++++++|++|.+.|+++|++|+|+++|++++++++|||++
T Consensus 17 ~l~~~l~~~~~~~~~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~ 90 (559)
T PRK08315 17 TIGQLLDRTAARYPDREALVYRDQG------LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAK 90 (559)
T ss_pred cHHHHHHHHHHHCCCCeEEEEcCCC------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 3556788888999999999985432 3899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhc-------------C--CcEEEEcCCCCC
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQ-------------A--PLAIVIPAKGSS 321 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~-------------~--~~~~~i~~~~~~ 321 (728)
+|++++|++|..+.+++..++++++++++++++..... ...... +..... . ...+.+...
T Consensus 91 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 166 (559)
T PRK08315 91 IGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDS-DYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE--- 166 (559)
T ss_pred hCeEEEecCccCCHHHHHHHHHhcCCCEEEEecccccc-chHHHHHHhhhhhhcccccccccccCCCceeEEeeccc---
Confidence 99999999999999999999999999999998754211 000000 000000 0 011111110
Q ss_pred cccccCCCCcCHHHHHHhhhccccC--ccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCE
Q 004825 322 FSMKLRDGDISWLDFLERVRKLKEN--EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADI 399 (728)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~ 399 (728)
...+...+.++.......... ........+++++|++|||||||.||||.++|+++...+......++++++|+
T Consensus 167 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~ 242 (559)
T PRK08315 167 ----KHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDR 242 (559)
T ss_pred ----CCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCce
Confidence 011234455554432110001 11123356789999999999999999999999999998888888889999999
Q ss_pred EEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEe
Q 004825 400 VAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGS 478 (728)
Q Consensus 400 ~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~ 478 (728)
++...|+.|..+. +.++.+|..|+++++.....++..+++.++++++|++.++|+++..++.........+++||.+++
T Consensus 243 ~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~ 322 (559)
T PRK08315 243 LCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIM 322 (559)
T ss_pred EEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEe
Confidence 9999999999887 568899999999997766678889999999999999999999999988766555567889999999
Q ss_pred ecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCccc--ccccccccCCCCCceEEEEcCC-CCccCCCCCceeE
Q 004825 479 TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ--AQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGE 555 (728)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d~~-g~~vp~g~~giGE 555 (728)
||+++++++++++.+.++..+++|.||+||++..++...... .....++|+|++|+.++|+|++ |++++.|+. ||
T Consensus 323 ~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--GE 400 (559)
T PRK08315 323 AGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQ--GE 400 (559)
T ss_pred cCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCc--eE
Confidence 999999999999988887667999999999987544333221 2345789999999999999998 999999987 99
Q ss_pred EEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCC
Q 004825 556 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 635 (728)
Q Consensus 556 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~ 635 (728)
|+|.+..+..+ |+++++.++..|.. .+||+|||+|++++||.++++||.|++||++|++|++.|||++|. .+
T Consensus 401 l~v~g~~~~~g-y~~~~~~~~~~~~~------~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~-~~ 472 (559)
T PRK08315 401 LCTRGYSVMKG-YWNDPEKTAEAIDA------DGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLY-TH 472 (559)
T ss_pred EEEECchhhhh-hcCChhHHhhcCCC------CCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHH-hC
Confidence 99976655432 45566667666632 239999999999999999999999999999999999999999996 89
Q ss_pred CCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHH
Q 004825 636 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 715 (728)
Q Consensus 636 p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L 715 (728)
|+|.+++|++.+++..+ +.++++|+... +. ..+..++ ++.++++||.|++|..++++++||+|++||++|++|
T Consensus 473 ~~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~~-~~~~~~l----~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L 545 (559)
T PRK08315 473 PKIQDVQVVGVPDEKYG-EEVCAWIILRP-GA-TLTEEDV----RDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKM 545 (559)
T ss_pred CCceEEEEEecCCCCCC-eEEEEEEEeCC-CC-CCCHHHH----HHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHH
Confidence 99999999999887766 78899998875 33 2344444 446788899999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 004825 716 RKQLAQLDQ 724 (728)
Q Consensus 716 ~~~~~~~~~ 724 (728)
++++.++.+
T Consensus 546 ~~~~~~~~~ 554 (559)
T PRK08315 546 REMMIEELG 554 (559)
T ss_pred HHHHHhhhc
Confidence 999887543
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-65 Score=580.95 Aligned_cols=504 Identities=19% Similarity=0.212 Sum_probs=402.6
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+.|.++++++|+++|+.+...+ +.+||+||.++++++|+.|++.|+++|++|+++++|++++++++|||+++
T Consensus 30 ~~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 103 (546)
T PLN02330 30 LPDFVLQDAELYADKVAFVEAVTG------KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAA 103 (546)
T ss_pred HHHHHhhhhhcCCCccEEEecCCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHh
Confidence 456677888899999999875321 28999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 338 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
|++++|+++.++.+++.+++++++++++|+++...... .......+++.... ......|.+++.
T Consensus 104 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~---------~~~~~~~i~~~~~~-------~~~~~~~~~~~~ 167 (546)
T PLN02330 104 GGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKV---------KGLGLPVIVLGEEK-------IEGAVNWKELLE 167 (546)
T ss_pred CcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhH---------hhcCCcEEEecCCC-------CCCcccHHHHHh
Confidence 99999999999999999999999999999998644221 11122233332211 123345666665
Q ss_pred hhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcC--CCCCCEEEecCCcchhhhHH-HH
Q 004825 339 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD--IRKADIVAWPTNLGWMMGPW-LV 415 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~-~~ 415 (728)
..... ..........++++++|+|||||||.||||+++|+++...+.......+ ....++++...|++|..++. .+
T Consensus 168 ~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~ 246 (546)
T PLN02330 168 AADRA-GDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGIC 246 (546)
T ss_pred hcccc-CcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHH
Confidence 43221 1111223345789999999999999999999999998876643321111 22346788899999998874 57
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCc--CeeEEEeecCCCCHHHHHHHHh
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWS--SIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~--~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
+.+|..|+++++.+. .++..+++.++++++|++.++|+++..+++.......+++ ++|.+++||+++++++++++.+
T Consensus 247 ~~~l~~g~~~~~~~~-~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~ 325 (546)
T PLN02330 247 CATLRNKGKVVVMSR-FELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEA 325 (546)
T ss_pred HHHhhcCCEEEEecc-cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHH
Confidence 889999999998864 5778899999999999999999999999876544444444 4799999999999999999998
Q ss_pred ccCCCCeEecccccccccccccCCccc----ccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccCCCcc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQ----AQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASST 568 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~~~~~ 568 (728)
.++++++++.||+||++++........ .....++|+|++|++++|+| ++++++|.|+. |||+|++..+..+ |
T Consensus 326 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~--Gel~v~g~~~~~g-y 402 (546)
T PLN02330 326 KFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTP--GELCVRSQCVMQG-Y 402 (546)
T ss_pred HcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCc--eEEEEecchhhhh-h
Confidence 887899999999999876443221111 12345899999999999999 56899999986 9999976654432 4
Q ss_pred ccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecC
Q 004825 569 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 648 (728)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~ 648 (728)
+++++.+++.|.. .+||+|||+|++++||.++++||.||+||++|++|+|.|||++|. .+|.|.+++|+++++
T Consensus 403 ~~~~~~~~~~~~~------~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~ 475 (546)
T PLN02330 403 YNNKEETDRTIDE------DGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILL-THPSVEDAAVVPLPD 475 (546)
T ss_pred ccCccchhhhccC------CCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHH-hCCchheEEEEeccc
Confidence 5566666666532 239999999999999999999999999999999999999999995 899999999999988
Q ss_pred CCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 649 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
+..| +.++++|+..+ +. ..+.++ ++++++++|+.|++|..++.+++||+|++||++|++|++++..+.
T Consensus 476 ~~~g-~~~~a~v~~~~-~~-~~~~~~----l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~~ 543 (546)
T PLN02330 476 EEAG-EIPAACVVINP-KA-KESEED----ILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSIN 543 (546)
T ss_pred cccC-ceeEEEEEECC-CC-CCCHHH----HHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhhh
Confidence 8777 78999998876 43 234444 555688899999999999999999999999999999999997763
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-65 Score=575.85 Aligned_cols=491 Identities=16% Similarity=0.161 Sum_probs=406.0
Q ss_pred hhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Q 004825 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (728)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~ 260 (728)
+.|.+.++.+|+++|+.+.+. ++||+||.++++++|+.|.+.|+++|++|+|+++++.++++++|||+++|+
T Consensus 4 ~~l~~~a~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~ 75 (502)
T TIGR01734 4 EAIQAFAETYPQTIAYRYQGQ--------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGH 75 (502)
T ss_pred HHHHHHHHHCCCceEEEcCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCC
Confidence 456777888999999998776 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhh
Q 004825 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERV 340 (728)
Q Consensus 261 ~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (728)
+++|+++.++.+++..+++..+++.+++++....... ....+.+.. ..++....
T Consensus 76 ~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~~~~~~~~~---------------~~~~~~~~ 129 (502)
T TIGR01734 76 AYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV-----------GTQIITLSA---------------LEQAETSG 129 (502)
T ss_pred EEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc-----------CCceEEchH---------------hhhhhhhc
Confidence 9999999999999999999999999999875321100 000111100 00111110
Q ss_pred hccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhh
Q 004825 341 RKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLL 420 (728)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (728)
. .........++++++++|||||||.||||+++|+++...+.+....+++..+++++...|++|+.+++.++.++.
T Consensus 130 ~----~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~ 205 (502)
T TIGR01734 130 G----PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLA 205 (502)
T ss_pred C----CccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHH
Confidence 0 011112345789999999999999999999999999999988888889999999999999999999998999999
Q ss_pred hCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCC
Q 004825 421 NGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 498 (728)
Q Consensus 421 ~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (728)
.|+++++.+.. .++..+++.++++++|.+.++|+++..++.........+++++.++++|++++++..+++.+.++++
T Consensus 206 ~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~ 285 (502)
T TIGR01734 206 SGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKA 285 (502)
T ss_pred CCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCc
Confidence 99999998753 3667899999999999999999999887765444556688999999999999999999999988889
Q ss_pred CeEecccccccccccccCCc----ccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccc
Q 004825 499 PVIEYCGGTEIGGGFITGSL----LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 574 (728)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~ 574 (728)
++++.||+||+++.++.... .......++|.|.+|++++|+|++++++|.|+. |||++.+..+..+ |+++++.
T Consensus 286 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~g~~~~~g-y~~~~~~ 362 (502)
T TIGR01734 286 TIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEK--GEIVIVGPSVSKG-YLNNPEK 362 (502)
T ss_pred EEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCe--eEEEEcccccccc-ccCCccc
Confidence 99999999998764433211 112234579999999999999999999999986 9999966554432 4556777
Q ss_pred cccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeec-CCCCCc
Q 004825 575 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP-PPDGGP 653 (728)
Q Consensus 575 ~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~-~~~~g~ 653 (728)
+...|... +|.+||+|||+|+++++ +++++||.+|+||++|++|+|.|||+++. .+|.|.+|+|++.. +...+
T Consensus 363 ~~~~~~~~---~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~-~~~~v~~~~vv~~~~~~~~~- 436 (502)
T TIGR01734 363 TAEAFFSH---EGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLR-QSSYIESAVVVPKYNKDHKV- 436 (502)
T ss_pred chHhheeC---CCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHH-cCCCccEEEEEEEEcCCCCc-
Confidence 76666432 36679999999999976 99999999999999999999999999995 99999999999875 33334
Q ss_pred eEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHH
Q 004825 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 720 (728)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 720 (728)
+.++++++... .. .....++.+.+++.++++||+|++|..++++++||+|++||++|++|+++++
T Consensus 437 ~~~~~~v~~~~-~~-~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 437 EYLIAAIVPET-ED-FEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred eEEEEEEEecc-cc-cccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 78999999876 32 2344566678888999999999999999999999999999999999999875
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-65 Score=583.04 Aligned_cols=511 Identities=19% Similarity=0.221 Sum_probs=406.7
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+.++++++++|+++|+++.+. .+||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 34 l~~~~~~~~~~~p~~~a~~~~~~--------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~ 105 (573)
T PRK05605 34 LVDLYDNAVARFGDRPALDFFGA--------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRL 105 (573)
T ss_pred HHHHHHHHHHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 45667888889999999999766 8999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC-cEEEEcCCCC-C---------------
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP-LAIVIPAKGS-S--------------- 321 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-~--------------- 321 (728)
|++++|++|.++.+++.+++++++++++|+++....... ........ .++.+..... .
T Consensus 106 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (573)
T PRK05605 106 GAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVE-----RLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALR 180 (573)
T ss_pred CcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHH-----hhhhccccceeEeeeccccccccccccccccccccc
Confidence 999999999999999999999999999999775321100 11111111 1111110000 0
Q ss_pred ----cccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcC-C-C
Q 004825 322 ----FSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD-I-R 395 (728)
Q Consensus 322 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~-~ 395 (728)
.......+...|.++..................++++++++|||||||.||+|+++|+++...+......+. + .
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 260 (573)
T PRK05605 181 KARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGD 260 (573)
T ss_pred ccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCC
Confidence 000001233456665543211000001223456799999999999999999999999999877665443322 2 3
Q ss_pred CCCEEEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCee
Q 004825 396 KADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 474 (728)
Q Consensus 396 ~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr 474 (728)
.++++++..|+.|..++ ..++.++..|+++++.+. .++..+++.|+++++|++.++|++++.|++.......+++++|
T Consensus 261 ~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr 339 (573)
T PRK05605 261 GPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPA-PDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVR 339 (573)
T ss_pred CCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhcc
Confidence 47899999999998887 457788999999999864 5778899999999999999999999999987666666789999
Q ss_pred EEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCC--CCccCCCCCc
Q 004825 475 CFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND--GCPIPQNVPG 552 (728)
Q Consensus 475 ~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~--g~~vp~g~~g 552 (728)
.+++||++++++..+++.+.+ ++++++.||+||+++.+...........+++|+|++|+.++|+|++ +++++.|..
T Consensus 340 ~i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~- 417 (573)
T PRK05605 340 NAFSGAMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEE- 417 (573)
T ss_pred EEEECCCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCe-
Confidence 999999999999998887765 4889999999999876555443333445789999999999999976 588999986
Q ss_pred eeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHh
Q 004825 553 MGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN 632 (728)
Q Consensus 553 iGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~ 632 (728)
|||++.+..... .|+++++.+.+.|.. | ||+|||+|+++++|+++++||.||+||++|++|+|.|||+++.
T Consensus 418 -Gel~v~~~~~~~-gy~~~~~~~~~~~~~-----g--~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~ 488 (573)
T PRK05605 418 -GELLVRGPQVFK-GYWNRPEETAKSFLD-----G--WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLR 488 (573)
T ss_pred -eEEEEecCchhh-hhcCChhHhhhcccC-----C--CcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHH
Confidence 999996654432 245566677766642 4 9999999999999999999999999999999999999999996
Q ss_pred cCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhH
Q 004825 633 AVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMR 712 (728)
Q Consensus 633 ~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR 712 (728)
.|+.|.+++|++.+++..+ +.+++++++.+ +. ..+.. .|+++++++|+.+++|..++++++||+|.+||++|
T Consensus 489 -~~~~i~~~~v~~~~~~~~~-~~~~~~vv~~~-~~-~~~~~----~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r 560 (573)
T PRK05605 489 -EHPGVEDAAVVGLPREDGS-EEVVAAVVLEP-GA-ALDPE----GLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRR 560 (573)
T ss_pred -hCcccceEEEEeeecccCC-eEEEEEEEECC-CC-CCCHH----HHHHHHHHhCccccCCcEEEEeccCCCCCcccccH
Confidence 8999999999999887776 89999999876 43 34444 45556888999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 004825 713 RVLRKQLAQL 722 (728)
Q Consensus 713 ~~L~~~~~~~ 722 (728)
++|++++.+.
T Consensus 561 ~~L~~~~~~~ 570 (573)
T PRK05605 561 REVREELLEK 570 (573)
T ss_pred HHHHHHHHHH
Confidence 9999998763
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-65 Score=578.42 Aligned_cols=516 Identities=21% Similarity=0.250 Sum_probs=404.0
Q ss_pred CCCCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Q 004825 168 GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (728)
Q Consensus 168 ~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (728)
.+|......+...++|.++++++|+++|+++.+.. ..+||+||.++++++|++|.+.|+++||+|+|+++|+++
T Consensus 7 ~~~~~~~~~~~l~~~l~~~a~~~p~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~ 80 (534)
T PRK05852 7 AAPMASDFGPRIADLVEVAATRLPEAPALVVTADR------IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAE 80 (534)
T ss_pred ccchhhhhcccHHHHHHHHHHhCCCCcEEEecCCC------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHH
Confidence 45655666667778899899999999999885531 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccC
Q 004825 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLR 327 (728)
Q Consensus 248 ~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 327 (728)
+++++|||+++|++++|++|.++.+++.+++++++++++|++........ . ..... ....+.+...... .
T Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-~---~~~~~-~~~~~~~~~~~~~-----~ 150 (534)
T PRK05852 81 FVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRA-E---PTTRW-WPLTVNVGGDSGP-----S 150 (534)
T ss_pred HHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhc-c---ccccc-cceeeeecccccc-----c
Confidence 99999999999999999999999999999999999999999864221000 0 00000 0111111111000 0
Q ss_pred CCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcc
Q 004825 328 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLG 407 (728)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (728)
...... ....... ...........++++++++|||||||.||||+++|+++.+.+......+++..+|++++..|++
T Consensus 151 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 227 (534)
T PRK05852 151 GGTLSV-HLDAATE--PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLY 227 (534)
T ss_pred cccccc-ccccccC--CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcc
Confidence 000000 0000000 0000011112247889999999999999999999999999888888888999999999999999
Q ss_pred hhhhHH-HHHHHhhhCcEEEEeCC-CCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCC--CCCCcCeeEEEeecCCC
Q 004825 408 WMMGPW-LVYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID--GYDWSSIRCFGSTGEAS 483 (728)
Q Consensus 408 ~~~~~~-~~~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~l~~lr~i~~gGe~l 483 (728)
|..++. .++.++..|+++++.+. ..++..+++.|+++++|++.++|+++..|.+..... ...++++|.++++|+++
T Consensus 228 ~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~ 307 (534)
T PRK05852 228 HGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPL 307 (534)
T ss_pred hhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCC
Confidence 999984 68889999999888653 346678999999999999999999999998764322 23467899999999999
Q ss_pred CHHHHHHHHhccCCCCeEecccccccccccccCCcc----cccccccccCC--CCCceEEEEcCCCCccCCCCCceeEEE
Q 004825 484 NVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTP--AMGCKLFILGNDGCPIPQNVPGMGELA 557 (728)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p--~~~~~v~i~d~~g~~vp~g~~giGEl~ 557 (728)
++++.+++.+.++ +++++.||+||++..++..... ......++|.+ .+|++++|+|++|+++++|+. |||+
T Consensus 308 ~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~g~~--Gel~ 384 (534)
T PRK05852 308 TAETAQALQTEFA-APVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAV--GEVW 384 (534)
T ss_pred CHHHHHHHHHHhC-CChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCCCCc--eEEE
Confidence 9999999888774 8899999999998755433221 01111233443 699999999999999999986 9999
Q ss_pred EeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCC
Q 004825 558 LSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN 637 (728)
Q Consensus 558 v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~ 637 (728)
|.+..+.. .|+++++.+++.|.. | ||+|||+|++++||++++.||.||+||++|.+|+|.|||++|. .+|+
T Consensus 385 v~g~~v~~-gY~~~~~~t~~~~~~-----g--~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~-~~~~ 455 (534)
T PRK05852 385 LRGTTVVR-GYLGDPTITAANFTD-----G--WLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLA-SHPN 455 (534)
T ss_pred EecCcccc-hhcCCcccchhhhcC-----C--CcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHH-hCCC
Confidence 96665543 245677777777742 3 9999999999999999999999999999999999999999995 8999
Q ss_pred eeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 638 VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 638 V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
|.+|+|++.+++..+ +.++++++..+ +. ..+.++ |.++++++||.|++|..|+++++||+|++||++|++|++
T Consensus 456 V~~~~v~g~~~~~~g-~~~~~~vv~~~-~~-~~~~~~----i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~ 528 (534)
T PRK05852 456 VMEAAVFGVPDQLYG-EAVAAVIVPRE-SA-PPTAEE----LVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAE 528 (534)
T ss_pred eeeEEEEecCCcCcC-ceEEEEEEECC-CC-CCCHHH----HHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHH
Confidence 999999999887777 88999998765 32 244444 445678889999999999999999999999999999999
Q ss_pred HHHh
Q 004825 718 QLAQ 721 (728)
Q Consensus 718 ~~~~ 721 (728)
++..
T Consensus 529 ~~~~ 532 (534)
T PRK05852 529 QFGH 532 (534)
T ss_pred Hhcc
Confidence 8853
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=578.72 Aligned_cols=515 Identities=18% Similarity=0.180 Sum_probs=412.2
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.+.++++|+++|+++.+.+ +.+||+||.++++++|++|.+.|+++|++|+|++++++++++++|||++
T Consensus 19 ~l~~~l~~~~~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~ 92 (558)
T PRK12583 19 TIGDAFDATVARFPDREALVVRHQA------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATAR 92 (558)
T ss_pred cHHHHHHHHHHHCCCCeEEEecCCC------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 3567888889999999999885432 3899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhh-------------cCCcEEEEcCCCCCcc
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDA-------------QAPLAIVIPAKGSSFS 323 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~i~~~~~~~~ 323 (728)
+|++++|+++.++.+++.+++++++++++|+++..... ...... ..... .+....++......
T Consensus 93 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 169 (558)
T PRK12583 93 IGAILVNINPAYRASELEYALGQSGVRWVICADAFKTS-DYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP-- 169 (558)
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCCcEEEEecccccc-chhHHHHHHhhhhccccccccccccCCcceEEEEecCCC--
Confidence 99999999999999999999999999999998754211 111100 11000 00000111110000
Q ss_pred cccCCCCcCHHHHHHhhhccc--cCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEE
Q 004825 324 MKLRDGDISWLDFLERVRKLK--ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVA 401 (728)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l 401 (728)
......|.+......... ..........++++++++|||||||.||||.++|+++.+.+......++++++|+++
T Consensus 170 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~ 246 (558)
T PRK12583 170 ---PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLC 246 (558)
T ss_pred ---CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEE
Confidence 112233444433221100 000111234578999999999999999999999999998888887888999999999
Q ss_pred ecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeec
Q 004825 402 WPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 480 (728)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gG 480 (728)
...|++|..+. +.++.++..|+++++.....++..+++.++++++|++.++|+++..++........+++++|.+++||
T Consensus 247 ~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G 326 (558)
T PRK12583 247 VPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAG 326 (558)
T ss_pred EecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecC
Confidence 99999999997 56888999999999877667788899999999999999999999988876554556789999999999
Q ss_pred CCCCHHHHHHHHhccCCCCeEecccccccccccccCCcc--cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEE
Q 004825 481 EASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL--QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL 558 (728)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v 558 (728)
+++++++.+++.+.++...+++.||+||++.+.+..... ......++|+|++++.++|+|+++++++.|+. |||+|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--Gel~v 404 (558)
T PRK12583 327 APCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEI--GELCT 404 (558)
T ss_pred CCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCe--eEEEE
Confidence 999999999998888777899999999999765443321 12245789999999999999999999999986 99999
Q ss_pred eccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCe
Q 004825 559 SPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNV 638 (728)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V 638 (728)
.+..+.. .|+++++.+...|.. ..||+|||+|++++||.+++.||.|++||++|.+|+|.|||++|. .+|+|
T Consensus 405 ~g~~~~~-gy~~~~~~~~~~~~~------~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v 476 (558)
T PRK12583 405 RGYSVMK-GYWNNPEATAESIDE------DGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLF-THPAV 476 (558)
T ss_pred EeCccch-hhcCChHHHHhhcCC------CCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHH-hCCCe
Confidence 6655433 245566666665532 239999999999999999999999999999999999999999996 89999
Q ss_pred eeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHH
Q 004825 639 LETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 718 (728)
Q Consensus 639 ~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 718 (728)
.+++|++.+++..+ +.++++++..+ +. ..+..+ |+++++++||+|++|..++.+++||+|++||++|++|+++
T Consensus 477 ~~~~v~~~~~~~~~-~~~~~~v~~~~-~~-~~~~~~----i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~ 549 (558)
T PRK12583 477 ADVQVFGVPDEKYG-EEIVAWVRLHP-GH-AASEEE----LREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREI 549 (558)
T ss_pred eEEEEEeeecCCCC-cEEEEEEEECC-CC-CCCHHH----HHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHH
Confidence 99999999887766 88999999876 33 234444 4556888999999999999999999999999999999998
Q ss_pred HHh
Q 004825 719 LAQ 721 (728)
Q Consensus 719 ~~~ 721 (728)
..+
T Consensus 550 ~~~ 552 (558)
T PRK12583 550 SIE 552 (558)
T ss_pred HHh
Confidence 765
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-65 Score=572.33 Aligned_cols=490 Identities=19% Similarity=0.203 Sum_probs=403.9
Q ss_pred hhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 004825 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (728)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG 259 (728)
.++|.++++++|+++|+++.+. .+||.||.++++++|++|.+.|+++|++|+|++++++++++++|||+++|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~~--------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G 76 (497)
T PRK06145 5 SASIAFHARRTPDRAALVYRDQ--------EISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLG 76 (497)
T ss_pred HHHHHHHHHHCCCceEEEECCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 3568888899999999999776 99999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHh
Q 004825 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 339 (728)
Q Consensus 260 ~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 339 (728)
++++|+++.++.+++.+++++++++++++++..... . ......+.++... ...+..+..
T Consensus 77 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~---------~-~~~~~~~~~~~~~----------~~~~~~~~~- 135 (497)
T PRK06145 77 AVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAI---------V-ALETPKIVIDAAA----------QADSRRLAQ- 135 (497)
T ss_pred cEEEecccccCHHHHHHHHHhcCCcEEEEccchhhh---------h-hcccceEEecCcc----------cchhHHHhc-
Confidence 999999999999999999999999999998754211 0 0011112221100 000111110
Q ss_pred hhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HHHHHH
Q 004825 340 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYAS 418 (728)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (728)
.. ..........++++++++|||||||.||||+++|+++...+......+++..+|+++...|++|..++ +..+.+
T Consensus 136 ~~---~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 212 (497)
T PRK06145 136 GG---LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAV 212 (497)
T ss_pred cC---CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHH
Confidence 00 00111223567899999999999999999999999998777666677889999999999999999887 456788
Q ss_pred hhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCC
Q 004825 419 LLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 498 (728)
Q Consensus 419 L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (728)
+..|+++++.+. .++..+++.++++++|++.++|+++..++........+++++|.+++|||++++++.+++.+.+++.
T Consensus 213 l~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~ 291 (497)
T PRK06145 213 LWVGGTLRIHRE-FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRA 291 (497)
T ss_pred HhccCEEEECCc-CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCC
Confidence 999999988764 5788899999999999999999999999887655556678999999999999999999999888888
Q ss_pred CeEecccccccccccccCCcc-cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcccccc
Q 004825 499 PVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 577 (728)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~ 577 (728)
++++.||+||++..++..... .....+++|+|+++++++|+|++++++|.|+. |||++.+..+.. .|+++++.+++
T Consensus 292 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~-Gy~~~~~~~~~ 368 (497)
T PRK06145 292 RYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMK--GEICMRGPKVTK-GYWKDPEKTAE 368 (497)
T ss_pred ceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCc--eEEEEECcchhh-hhcCChHHHHH
Confidence 999999999998754433221 12245689999999999999999999999986 999997655432 24556777777
Q ss_pred ccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEE
Q 004825 578 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 657 (728)
Q Consensus 578 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~ 657 (728)
.|.. + ||+|||+|+++.||+++++||.||+||++|++|+|.+||++|. .+|+|.+++|++.+++..+ +.++
T Consensus 369 ~~~~-----~--~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~ 439 (497)
T PRK06145 369 AFYG-----D--WFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIY-ELPEVAEAAVIGVHDDRWG-ERIT 439 (497)
T ss_pred HHhC-----C--CeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEecCCCccC-ceEE
Confidence 7742 2 9999999999999999999999999999999999999999995 8999999999999887777 7899
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHH
Q 004825 658 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 720 (728)
Q Consensus 658 a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 720 (728)
+++++.+ +. ..+..+ |+++++++|++|++|..++++++||+|++||++|++|+++++
T Consensus 440 ~~v~~~~-~~-~~~~~~----l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 440 AVVVLNP-GA-TLTLEA----LDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred EEEEECC-CC-CCCHHH----HHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 9999875 33 334444 455688889999999999999999999999999999999875
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-65 Score=572.03 Aligned_cols=477 Identities=21% Similarity=0.248 Sum_probs=396.9
Q ss_pred hhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 004825 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (728)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG 259 (728)
.+.|.+++.++||++|+++.++ .+||+||.++++++|++|.+.|+++|++|+|++++++++++++|||+++|
T Consensus 5 ~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G 76 (483)
T PRK03640 5 PNWLKQRAFLTPDRTAIEFEEK--------KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLG 76 (483)
T ss_pred HHHHHHHHHhCCCceEEEeCCe--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCC
Confidence 4567788899999999998876 99999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHh
Q 004825 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 339 (728)
Q Consensus 260 ~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 339 (728)
++++|+++.++.+++..++++++++++++++....... .. ....+.++...
T Consensus 77 ~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---------~~--------------------~~~~~~~~~~~ 127 (483)
T PRK03640 77 AVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLI---------PG--------------------ISVKFAELMNG 127 (483)
T ss_pred cEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHh---------hh--------------------ccccHHHHhhc
Confidence 99999999999999999999999999999874321000 00 01113333222
Q ss_pred hhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHh
Q 004825 340 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 419 (728)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L 419 (728)
... .........++++++++|||||||.||||+++|+++...+......++++++|++++..|++|..++..++.+|
T Consensus 128 ~~~---~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l 204 (483)
T PRK03640 128 PKE---EAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSV 204 (483)
T ss_pred ccc---cCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHH
Confidence 111 11122345678999999999999999999999999988877777778999999999999999999988889999
Q ss_pred hhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCC
Q 004825 420 LNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKP 499 (728)
Q Consensus 420 ~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (728)
..|+++++.+. .++..+++.|+++++|++.++|+++..|.+..... ....++|.+++||+++++...+++.+. +++
T Consensus 205 ~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~ 280 (483)
T PRK03640 205 IYGMRVVLVEK-FDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIP 280 (483)
T ss_pred hcCCEEEecCC-CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCC
Confidence 99999999874 57789999999999999999999999998654322 234689999999999999998887753 589
Q ss_pred eEecccccccccccccCCcc-cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccc
Q 004825 500 VIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY 578 (728)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~ 578 (728)
+++.||+||++..+...... .....+++|+|+++++++|.|+. +++|.|+. |||+|.+..+..+ |+++++.+...
T Consensus 281 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~-~~~~~g~~--Gel~v~g~~~~~g-y~~~~~~~~~~ 356 (483)
T PRK03640 281 VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDG-VVVPPFEE--GEIVVKGPNVTKG-YLNREDATRET 356 (483)
T ss_pred eeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecCC-CcCCCCCc--eEEEEECcchhhh-hcCCHHHHHHH
Confidence 99999999987644333322 23456789999999999999864 89999987 9999976655432 34566666666
Q ss_pred cccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEE
Q 004825 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 658 (728)
Q Consensus 579 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a 658 (728)
|.. | ||+|||++++++||.++++||+||++|++|.+|++.|||+++. .+|+|.+++|++.+++..+ ..+++
T Consensus 357 ~~~-----~--~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~ 427 (483)
T PRK03640 357 FQD-----G--WFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLL-SHPGVAEAGVVGVPDDKWG-QVPVA 427 (483)
T ss_pred Hhc-----C--CeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeCCCcccC-CceEE
Confidence 642 3 9999999999999999999999999999999999999999995 8999999999998887766 77888
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 659 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 659 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+++... ..+.++++ +++++.|++|++|..|+.+++||+|++||++|++|++++++
T Consensus 428 ~~~~~~----~~~~~~l~----~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 428 FVVKSG----EVTEEELR----HFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred EEEeCC----CCCHHHHH----HHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 888654 34555544 46788899999999999999999999999999999999875
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=597.82 Aligned_cols=503 Identities=17% Similarity=0.138 Sum_probs=384.1
Q ss_pred hhhhcccccCCCCC-CeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 179 AKNCLSVNSKRSLD-DIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 179 ~~~~l~~~~~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
..++|.++++++|+ ++|+.+.+. +.+||+||.++++++|++|++. +++||+|+|+++|++++++++|||++
T Consensus 206 ~~~~l~~~~~~~p~~~~a~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~ 277 (718)
T PRK08043 206 LYEALLSAQYRYGAGKPCIEDVNF-------TPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASL 277 (718)
T ss_pred HHHHHHHHHHHhCCCCcceEcCCC-------CcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHH
Confidence 34567778889998 688875332 2899999999999999999987 59999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC-CcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA-PLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
+|++++|+++.++.+++.+++++++++++|+++.......... ...... ...+.+.... ....+.+.
T Consensus 278 ~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~---------~~~~~~~~ 345 (718)
T PRK08043 278 RRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWH---LPEQLTQVRWVYLEDLK---------DDVTTADK 345 (718)
T ss_pred cCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCC---hhhhhccccEEEhhhhh---------hhcchhHH
Confidence 9999999999999999999999999999999875432111000 000001 1112111100 00111110
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HHH
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLV 415 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~ 415 (728)
..................++++|||+|||||||.||||+++|+++++.+.+....++++++|++++..|++|.++. ..+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~ 425 (718)
T PRK08043 346 LWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGL 425 (718)
T ss_pred HHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHH
Confidence 0000000000111123467999999999999999999999999999988888778899999999999999999987 568
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhcc
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 495 (728)
+.+|..|+++++.+...++..+++.++++++|++..+|+++..+.+.. ...++++||.+++||+++++++.+++.+.+
T Consensus 426 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~ 503 (718)
T PRK08043 426 FTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF 503 (718)
T ss_pred HHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc
Confidence 899999999999875445567889999999999999999998876642 335678999999999999999999888776
Q ss_pred CCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCcccc--Ccc
Q 004825 496 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL--NAN 573 (728)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~--~~~ 573 (728)
++++++.||+||++...+...+ .....+++|+|++|++++|+|+++. |.. |||++.+..+..+| ++ +++
T Consensus 504 -g~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~~~i~d~~~~----~~~--Gel~v~g~~v~~GY-~~~e~~~ 574 (718)
T PRK08043 504 -GLRILEGYGVTECAPVVSINVP-MAAKPGTVGRILPGMDARLLSVPGI----EQG--GRLQLKGPNIMNGY-LRVEKPG 574 (718)
T ss_pred -CCCeecccCcccccceEEecCC-cccCCCCCCCcCCCCeeEEecCCCC----CCc--eEEEEecCCccccc-cCCCCcc
Confidence 4899999999999865543322 2235679999999999999998763 343 99999776554322 33 233
Q ss_pred ccccccc-cCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 574 HYDVYFS-GMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 574 ~~~~~f~-~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
.+...+. ........+||+|||+|++|+||+++++||+||+||++|++|+|.|||+++. .|+.+.+++|++.+++..|
T Consensus 575 ~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~-~~~~~~~~avv~~~~~~~g 653 (718)
T PRK08043 575 VLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLAL-GVSPDKQHATAIKSDASKG 653 (718)
T ss_pred cccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHH-hCCccceEEEEEccCCCCC
Confidence 2211111 1100112349999999999999999999999999999999999999999995 8888888888888887777
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhh-CCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK-LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
+.++++++. . ..+.+++++ +++++ |+.||+|..++++++||+|++||+||++|++++.+..
T Consensus 654 -e~~v~~~~~-~----~~~~~~l~~----~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 715 (718)
T PRK08043 654 -EALVLFTTD-S----ELTREKLQQ----YAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDEPE 715 (718)
T ss_pred -ceEEEEEcC-c----ccCHHHHHH----HHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhccc
Confidence 778877642 2 245555544 56666 9999999999999999999999999999999887643
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-65 Score=574.02 Aligned_cols=505 Identities=19% Similarity=0.221 Sum_probs=410.2
Q ss_pred hhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 004825 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (728)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG 259 (728)
.++|.++++++|+++|+.+.++ .+||+||.++++++|++|++.|+++|++|+|+++|++++++++|||+++|
T Consensus 3 ~~~~~~~~~~~p~~~a~~~~~~--------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G 74 (515)
T TIGR03098 3 HHLLEDAAARLPDATALVHHDR--------TLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAG 74 (515)
T ss_pred HHHHHHHHHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 4567778889999999999776 99999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC--CcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 260 ~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
++++|+++.++.+++..+++++++++++++....... ........ ..++.+....... ........|.++.
T Consensus 75 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 147 (515)
T TIGR03098 75 GVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLL-----HPALPGCHDLRTLILVGEPAHAS--EGGGESPSWPKLL 147 (515)
T ss_pred EEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhh-----HhhhhcccccceEEEecCccccc--CCccccccHHHhh
Confidence 9999999999999999999999999999986432100 01111111 1233333211110 0112234565554
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHH
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 417 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (728)
..... ........+++++++|||||||.||||+++|+++...+......+++..+|++++..|++|++++..++.
T Consensus 148 ~~~~~-----~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 222 (515)
T TIGR03098 148 ALGDA-----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTT 222 (515)
T ss_pred ccccc-----cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHH
Confidence 32211 1223345689999999999999999999999999988888777888999999999999999999988999
Q ss_pred HhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCC
Q 004825 418 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 497 (728)
Q Consensus 418 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~ 497 (728)
++..|+++++.+. .++..+++.++++++|++.++|+++..|.+... ....++++|.+++||+++++++.+++.+.+++
T Consensus 223 ~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~ 300 (515)
T TIGR03098 223 AFYVGATVVLHDY-LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPN 300 (515)
T ss_pred HHHcCCEEEEcCC-CCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCC
Confidence 9999999998764 577889999999999999999999999987532 22457899999999999999999999988877
Q ss_pred CCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcccccc
Q 004825 498 KPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 577 (728)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~ 577 (728)
+.+++.||+||++...............++|+|++|++++|+|+++++++.|+. |||++.+..+.. .|+++++.+..
T Consensus 301 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~-gy~~~~~~~~~ 377 (515)
T TIGR03098 301 ARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEE--GELVHRGALVAM-GYWNDPEKTAE 377 (515)
T ss_pred CeEeeeeccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCCCc--eEEEEcCchhhc-cccCCchhhhh
Confidence 899999999998754433222223446789999999999999999999999986 999997665443 23556667777
Q ss_pred ccccCCCC-----CCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 578 YFSGMPSR-----NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 578 ~f~~~p~~-----~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
.|.+++.. .+.+||+|||+|++++||++++.||.||+||++|.+|+|.|||++|. .||.|.+|+|++.+++..|
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g 456 (515)
T TIGR03098 378 RFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAY-ATGLVAEAVAFGVPDPTLG 456 (515)
T ss_pred hhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHh-cCCCeeEEEEEeccCcccC
Confidence 77655431 23458999999999999999999999999999999999999999996 9999999999999988777
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
+.++++++... +. ..+..+ ++++++++|+++++|..++++++||+|.+||++|++|++
T Consensus 457 -~~~~~~~~~~~-~~-~~~~~~----l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 457 -QAIVLVVTPPG-GE-ELDRAA----LLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred -ceEEEEEEeCC-CC-CCCHHH----HHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 88999988654 32 345444 445678889999999999999999999999999999964
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=580.48 Aligned_cols=484 Identities=17% Similarity=0.125 Sum_probs=369.9
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+.|.++++++|+++|+++.+. +.++++||+||.++++++|++|.++ ++||+|+|+++|++++++++|||+++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~~~----~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~ 77 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDRES----GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLA 77 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCCCC----CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHc
Confidence 45567888899999999998764 2356999999999999999999998 89999999999999999999999999
Q ss_pred CcEEEecCCC--------CCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCC
Q 004825 259 GYIVVSIADS--------FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGD 330 (728)
Q Consensus 259 G~~~vpl~p~--------~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 330 (728)
|+++++ +|. ...+++.+++++++++++|++..... ........+ .+.
T Consensus 78 G~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~-~~~-------------- 132 (525)
T PRK05851 78 GAAVSI-LPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLE---------RLRAVDSSV-TVH-------------- 132 (525)
T ss_pred CCCCcC-CCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHH---------HHHHhhccc-ccc--------------
Confidence 998754 442 23356667899999999999864321 010000000 000
Q ss_pred cCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCC-CCCEEEecCCcchh
Q 004825 331 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIR-KADIVAWPTNLGWM 409 (728)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~d~~l~~~~~~~~ 409 (728)
++...... ..........++++|||+|||||||.||||+++|+++++.+.+....++++ ++|+++++.|++|+
T Consensus 133 ----~~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 206 (525)
T PRK05851 133 ----DLATAAHT--NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHD 206 (525)
T ss_pred ----cccccccc--cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccC
Confidence 00000000 000011124678999999999999999999999999999988888888998 99999999999999
Q ss_pred hhHHHHHHHhhhCcEEEEeCCC-C--CcchHHHHHHHhCCcEEEecHHHHHHHHcCC-CCCCCCCcCeeEEEeecCCCCH
Q 004825 410 MGPWLVYASLLNGASIALYNGS-P--LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN-CIDGYDWSSIRCFGSTGEASNV 485 (728)
Q Consensus 410 ~~~~~~~~~L~~G~~lvl~~~~-~--~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~-~~~~~~l~~lr~i~~gGe~l~~ 485 (728)
+++..++.+|+.|+++++.+.. . ++..+++.++++++|++..+|.++..+.... .....++++||.+++||+++++
T Consensus 207 ~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~ 286 (525)
T PRK05851 207 MGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDC 286 (525)
T ss_pred ccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCH
Confidence 9998889999999999997632 2 4567999999999998866665555554322 1234457899999999999999
Q ss_pred HHHHHHHhc---cC--CCCeEecccccccccccccCCcc--------------cccccccccCCCCCceEEEEcCCC-Cc
Q 004825 486 DEYLWLMGR---AL--YKPVIEYCGGTEIGGGFITGSLL--------------QAQSLAAFSTPAMGCKLFILGNDG-CP 545 (728)
Q Consensus 486 ~~~~~~~~~---~~--~~~l~n~YG~TE~~~~~~~~~~~--------------~~~~~~~iG~p~~~~~v~i~d~~g-~~ 545 (728)
++.+++.+. ++ ...++|.||+||++..++...+. ......++|+|++|++++|+|+++ .+
T Consensus 287 ~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~ 366 (525)
T PRK05851 287 DGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAG 366 (525)
T ss_pred HHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCcc
Confidence 998888764 22 23599999999998655432211 012346899999999999999886 46
Q ss_pred cCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHH
Q 004825 546 IPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSV 625 (728)
Q Consensus 546 vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~ 625 (728)
+|.|+. |||+|.+..+..+ |+++++.+ ..+||+|||+|+++ ||.|+|+||+||+||++|+||+|.
T Consensus 367 ~~~g~~--GEl~v~g~~~~~G-Y~~~~~~~-----------~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~ 431 (525)
T PRK05851 367 VAGREI--GEIEIRGASMMSG-YLGQAPID-----------PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPT 431 (525)
T ss_pred CCCCCe--EEEEEecCchhhc-cccCCccC-----------CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHH
Confidence 898886 9999976654332 23333211 12399999999986 899999999999999999999999
Q ss_pred HHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECC--CCC
Q 004825 626 EIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLP--SLP 703 (728)
Q Consensus 626 eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~--~lP 703 (728)
|||++|. .||+|.+|+|++++++..+ +...++++... . ..+.++++++++++|..++ +|+|..+++++ +||
T Consensus 432 eIE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~~~v~~~~-~--~~~~~~~~~~~~~~l~~~l--~~~P~~~~~v~~~~lP 504 (525)
T PRK05851 432 EIERVAA-QVRGVREGAVVAVGTGEGS-ARPGLVIAAEF-R--GPDEAGARSEVVQRVASEC--GVVPSDVVFVAPGSLP 504 (525)
T ss_pred HHHHHHH-hCCCcccceEEEEEecCCC-CceeEEEEEEe-c--CcchHHHHHHHHHHHHHHh--CCCccEEEEECCCCcC
Confidence 9999995 8999999999999887766 56666665542 1 1345667777666666655 38999999998 899
Q ss_pred CCCCCchhHHHHHHHHHh
Q 004825 704 RTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 704 ~t~~GKvdR~~L~~~~~~ 721 (728)
+|+||||+|++|++.+++
T Consensus 505 ~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 505 RTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred cCcchHHHHHHHHHHHHh
Confidence 999999999999998865
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=575.31 Aligned_cols=504 Identities=19% Similarity=0.220 Sum_probs=398.7
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+++.++++.+|+++|+++.+.. .+..+.+||+||+++++++|++|++.|+++|++|+++++|++++++++|||+++
T Consensus 24 ~~~~~~~~~~~~p~~~a~~~~~~~--~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 101 (538)
T TIGR03208 24 INDHFDAAVANCPDKPALTAYRDG--HGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI 101 (538)
T ss_pred HHHHHHHHHHHCCCceEEEeeccc--CCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 446678888899999999874221 112348999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
|++++|++|.++.+++.+++++++++++++++.... ....... ........ .+++++.. ....+.+
T Consensus 102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 170 (538)
T TIGR03208 102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRG-FDHAAMARELQSKLPALRQVVVIDGD----------GDDSFDR 170 (538)
T ss_pred CEEEeccCcccCHHHHHHHHHhcCCeEEEEcccccc-ccHHHHHHHHhccCCcceEEEEecCC----------CCcCHHH
Confidence 999999999999999999999999999999875421 0000101 11111111 22222211 1122333
Q ss_pred HHHhhhccc-cC---ccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhh
Q 004825 336 FLERVRKLK-EN---EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMG 411 (728)
Q Consensus 336 ~~~~~~~~~-~~---~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 411 (728)
++....... +. ........++++|+++|||||||.||||+++|+++...+......++++.+|++++.+|++|..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 250 (538)
T TIGR03208 171 VLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTG 250 (538)
T ss_pred HhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHH
Confidence 322111000 00 01112356799999999999999999999999999998888888888999999999999999988
Q ss_pred H-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHH
Q 004825 412 P-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 490 (728)
Q Consensus 412 ~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~ 490 (728)
. +.++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..+..........++++|.+++||+++++++.++
T Consensus 251 ~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~ 329 (538)
T TIGR03208 251 FMYGLMMPLILNATAVLQD-IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVER 329 (538)
T ss_pred HHHHHHHHHHcCCEEEecC-ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHH
Confidence 6 67889999999999875 357788999999999999999999999887654334456789999999999999999998
Q ss_pred HHhccCCCCeEecccccccccccccCCccc-ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccc
Q 004825 491 LMGRALYKPVIEYCGGTEIGGGFITGSLLQ-AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 569 (728)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~ 569 (728)
+.+.++ ++++|.||+||++...+...... .....++|+|++|++++|+|+++++++.|+. |||+|.+..... .|+
T Consensus 330 ~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~--Gel~v~g~~~~~-gy~ 405 (538)
T TIGR03208 330 AWELLG-ALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGET--GRLLVRGCSNFG-GYL 405 (538)
T ss_pred HHHHcC-CeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCC--cEEEEecCcccc-ccc
Confidence 887764 88999999999886544332211 1224578999999999999999999999987 999997665433 234
Q ss_pred cCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCC
Q 004825 570 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 649 (728)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~ 649 (728)
++++.+. + .+.+||+|||+|++++||.++++||.||+||++|++|+|.|||++|. .||+|.+++|++.+++
T Consensus 406 ~~~~~~~--~------~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~ 476 (538)
T TIGR03208 406 KRPHLNS--T------DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLY-QHPAVAQVAIVAYPDE 476 (538)
T ss_pred CCccccc--c------cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHh-cCcceeeEEEEeccCC
Confidence 5555443 1 13359999999999999999999999999999999999999999995 8999999999999887
Q ss_pred CCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHH
Q 004825 650 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716 (728)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 716 (728)
..| +.+++++++.. +. ..+..++++ .+++ +++.|++|..++++++||+|++||++|++|+
T Consensus 477 ~~g-~~~~a~v~~~~-~~-~~~~~~l~~----~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 477 RLG-ERACAVVVPKP-GC-TLDFAAMVA----FLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred CCC-ceEEEEEEECC-CC-CCCHHHHHH----HHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 777 88999999876 43 345555554 5654 7999999999999999999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-65 Score=570.88 Aligned_cols=486 Identities=21% Similarity=0.191 Sum_probs=399.5
Q ss_pred hhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 004825 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (728)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG 259 (728)
..|+++++++||++|+++.++ .+||+||.++++++|++|++ .|+++|++|+|+++|++++++++|||+++|
T Consensus 6 ~~~~~~a~~~p~~~a~~~~~~--------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G 77 (496)
T PRK06839 6 YWIEKRAYLHPDRIAIITEEE--------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVE 77 (496)
T ss_pred HHHHHHHHHCCCCeEEEECCc--------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 447778899999999998776 99999999999999999986 699999999999999999999999999999
Q ss_pred cEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC-CcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004825 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA-PLAIVIPAKGSSFSMKLRDGDISWLDFLE 338 (728)
Q Consensus 260 ~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
++++|+++.++.+++..++++++++++++++....... ....... ...+.+. ++.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------------~~~~~~~ 137 (496)
T PRK06839 78 CIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMAL-----SMQKVSYVQRVISIT---------------SLKEIED 137 (496)
T ss_pred cEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHH-----HhhhccCcceEEEec---------------chHhhhc
Confidence 99999999999999999999999999999875421100 1100000 1111111 1222211
Q ss_pred hhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HHHHH
Q 004825 339 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYA 417 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~ 417 (728)
... .......++++++|+|||||||.||+|+++|+++..........++++.+|+++...|++|..++ ..++.
T Consensus 138 ~~~------~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 211 (496)
T PRK06839 138 RKI------DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFP 211 (496)
T ss_pred cCC------CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHH
Confidence 110 11223456899999999999999999999999987766666677889999999999999999887 45678
Q ss_pred HhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCC
Q 004825 418 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 497 (728)
Q Consensus 418 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~ 497 (728)
++..|+++++.+ ..++..+++.++++++|++.++|++++.|++.......+++++|.+++||++++++..+++.+. +
T Consensus 212 ~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g 288 (496)
T PRK06839 212 TLFAGGVIIVPR-KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--G 288 (496)
T ss_pred HHhcCcEEEEcc-CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--C
Confidence 999999998865 4578889999999999999999999999998765556678899999999999999999888765 5
Q ss_pred CCeEecccccccccccccCCc-ccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccc
Q 004825 498 KPVIEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYD 576 (728)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~ 576 (728)
+++++.||+||++..++.... ......+++|+|+++++++|+|++++.++.|+. |||+|.+..+.. .|+.+++.+.
T Consensus 289 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~-gy~~~~~~~~ 365 (496)
T PRK06839 289 FLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEV--GELLIRGPNVMK-EYWNRPDATE 365 (496)
T ss_pred CeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCc--eEEEEECCCcch-hhcCChHHHH
Confidence 899999999999864433322 222446789999999999999999999999986 999997665432 3455666666
Q ss_pred cccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEE
Q 004825 577 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 656 (728)
Q Consensus 577 ~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l 656 (728)
..|. +| ||+|||+|++++||.+++.||.||+||++|.+|+|.|||++|. .+|+|.+++|++.+++..| +.+
T Consensus 366 ~~~~-----~g--~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~ 436 (496)
T PRK06839 366 ETIQ-----DG--WLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVIN-KLSDVYEVAVVGRQHVKWG-EIP 436 (496)
T ss_pred HHHc-----CC--CeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-ceE
Confidence 5553 23 9999999999999999999999999999999999999999996 8999999999999888777 889
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 657 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 657 ~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+++|++++ +. ..+..+ |++++++.|+.|++|..|++++++|+|.+||++|++|+++.++
T Consensus 437 ~~~v~~~~-~~-~~~~~~----l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 437 IAFIVKKS-SS-VLIEKD----VIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred EEEEEECC-CC-CCCHHH----HHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence 99999876 44 344444 4556888999999999999999999999999999999998764
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-65 Score=584.39 Aligned_cols=508 Identities=18% Similarity=0.142 Sum_probs=391.5
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...+.|.++++++|+++|+++.++ ++||+||.++++++|++|.+.|+++|++|+|+++|++++++++|||++
T Consensus 38 tl~~~l~~~a~~~p~~~Ai~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~ 109 (600)
T PRK08279 38 SLGDVFEEAAARHPDRPALLFEDQ--------SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAK 109 (600)
T ss_pred cHHHHHHHHHHhCCCCcEEEeCCC--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 455778888899999999999877 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC-CcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA-PLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
+|++++|+++.++.+++.+++++++++++|+++....... .+..... ...+.+...... .....|.++
T Consensus 110 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 178 (600)
T PRK08279 110 LGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFE-----EARADLARPPRLWVAGGDTL------DDPEGYEDL 178 (600)
T ss_pred cCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHH-----HHhhhhcccceEEEecCccc------cccccHHHH
Confidence 9999999999999999999999999999999875321100 1111111 112222111000 012234444
Q ss_pred HHhhhccccC-ccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH-H
Q 004825 337 LERVRKLKEN-EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-L 414 (728)
Q Consensus 337 ~~~~~~~~~~-~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~ 414 (728)
.......... ........++++++|+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|.+++. .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~ 258 (600)
T PRK08279 179 AAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVA 258 (600)
T ss_pred hhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHH
Confidence 3322211110 1112334678999999999999999999999999999998888889999999999999999999985 4
Q ss_pred HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhc
Q 004825 415 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 494 (728)
++.+|..|+++++.+ ..++..+++.++++++|++.++|++++.++...........++|.+ +|+.+++++++++.+.
T Consensus 259 ~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~ 335 (600)
T PRK08279 259 WSSVLAAGATLALRR-KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQR 335 (600)
T ss_pred HHHHHhcCcEEEEcC-CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHH
Confidence 556777888887765 4677889999999999999999999999987644333345667754 5788999999999988
Q ss_pred cCCCCeEecccccccccccccCCcccccccccccCCCC----Cce---------EEEEcCCC--CccCCCCCceeEEE--
Q 004825 495 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAM----GCK---------LFILGNDG--CPIPQNVPGMGELA-- 557 (728)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~----~~~---------v~i~d~~g--~~vp~g~~giGEl~-- 557 (728)
++...++|.||+||++..++.. .....++|++.+ +.. ..|.|.++ .+++.|+. |||+
T Consensus 336 ~~~~~l~~~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~--Gel~~~ 409 (600)
T PRK08279 336 FGIPRILEFYAASEGNVGFINV----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEV--GLLIGR 409 (600)
T ss_pred hCcceeeeeecccccceeeccc----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCc--eeEEEE
Confidence 8766799999999988643321 123345666554 222 23344443 35788876 9998
Q ss_pred EeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCC
Q 004825 558 LSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN 637 (728)
Q Consensus 558 v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~ 637 (728)
|.+..+. .+|++++.+...|..+++.++.+||+|||+|++++||.++++||.||+||++|+||+|.|||++|. .||+
T Consensus 410 i~~~~~~--~GY~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~-~~p~ 486 (600)
T PRK08279 410 ITDRGPF--DGYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALS-GFPG 486 (600)
T ss_pred ecCcccc--cccCCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHh-cCCC
Confidence 4333322 234777888888877666666789999999999999999999999999999999999999999996 8999
Q ss_pred eeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 638 VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 638 V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
|.+|+|++++++..+....+++++..+ +. ..+.+++ +++++++||.||+|..|+++++||+|+|||++|++|++
T Consensus 487 V~~a~v~gv~~~~~~~~~~~~~vv~~~-~~-~~~~~~l----~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 560 (600)
T PRK08279 487 VEEAVVYGVEVPGTDGRAGMAAIVLAD-GA-EFDLAAL----AAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRK 560 (600)
T ss_pred cceEEEEEeecCCCCCccceeEEEecC-Cc-cCCHHHH----HHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhh
Confidence 999999998876532245566666654 33 3454444 44688899999999999999999999999999999998
Q ss_pred HHHhh
Q 004825 718 QLAQL 722 (728)
Q Consensus 718 ~~~~~ 722 (728)
++.+.
T Consensus 561 ~~~~~ 565 (600)
T PRK08279 561 EGFDP 565 (600)
T ss_pred cCCCc
Confidence 77664
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=589.78 Aligned_cols=505 Identities=17% Similarity=0.161 Sum_probs=388.6
Q ss_pred hhhhcccccCCCCCCeEEEEeccC-CCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEG-DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
..++|+++++++|+++|+++.+.. ...+..+.+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||++
T Consensus 23 l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~~~ 101 (631)
T PRK07769 23 LVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGALY 101 (631)
T ss_pred HHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHHHH
Confidence 446678888899999999985421 0112345899999999999999999987 89999999999999999999999999
Q ss_pred cCcEEEec-CCCCC--HHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC----CcEEEEcCCCCCcccccCCCC
Q 004825 258 AGYIVVSI-ADSFA--SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA----PLAIVIPAKGSSFSMKLRDGD 330 (728)
Q Consensus 258 aG~~~vpl-~p~~~--~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~ 330 (728)
+|++++|+ ++..+ .+++.+++++++++++|+++..... + ........ ..++.++... ..
T Consensus 102 ~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~---------~~ 167 (631)
T PRK07769 102 AGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEG---V--RKFFRARPAKERPRVIAVDAVP---------DE 167 (631)
T ss_pred cCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHH---H--HHHHhhccccccceEEEccccc---------cc
Confidence 99999999 56665 6889999999999999998753210 0 01111111 1111111000 00
Q ss_pred cCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhh
Q 004825 331 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMM 410 (728)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 410 (728)
.. .........++++++|+|||||||.||||+++|+++...+......++++++|+++++.|++|++
T Consensus 168 ---------~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~ 234 (631)
T PRK07769 168 ---------VG----ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDM 234 (631)
T ss_pred ---------cc----cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCch
Confidence 00 00111234678999999999999999999999999998888777888999999999999999999
Q ss_pred hHHHHHHHhhhCcEEEEeCCC-C--CcchHHHHHHHhCC---cEEEecHHHHHHHHcCC---C--CCCCCCcCeeEEEee
Q 004825 411 GPWLVYASLLNGASIALYNGS-P--LGSGFAKFVQDAKV---TMLGVVPSIVRTWKSTN---C--IDGYDWSSIRCFGST 479 (728)
Q Consensus 411 ~~~~~~~~L~~G~~lvl~~~~-~--~~~~l~~~i~~~~v---t~l~~~Ps~l~~l~~~~---~--~~~~~l~~lr~i~~g 479 (728)
++..++.+++.|+++++..+. . ++..+++.+.++++ +++..+|+++..+.... . ....++++||.+++|
T Consensus 235 gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~g 314 (631)
T PRK07769 235 GLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNG 314 (631)
T ss_pred hhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEec
Confidence 998778888999999988642 2 67788999999886 78999999887765421 1 113568899999999
Q ss_pred cCCCCHHHHHHHHhccC-----CCCeEecccccccccccccCCcccc--------------------------ccccccc
Q 004825 480 GEASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQA--------------------------QSLAAFS 528 (728)
Q Consensus 480 Ge~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG 528 (728)
|+++++++.+++.+.++ ...++|.||+||++..++....... ....++|
T Consensus 315 g~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G 394 (631)
T PRK07769 315 SEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAG 394 (631)
T ss_pred cCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCC
Confidence 99999999999887762 2459999999998765443221100 0124789
Q ss_pred CCCCCceEEEEcC-CCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCC-----------CCCceeEEeCce
Q 004825 529 TPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPS-----------RNGQILRRHGDV 596 (728)
Q Consensus 529 ~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~-----------~~g~~~y~TGDl 596 (728)
+|.+++.++|+|+ +|+++|.|+. |||+|.+..+..+ |+++++.|++.|...+. ..+.+||+|||+
T Consensus 395 ~~~~~~~~~ivd~~~g~~~~~ge~--GEl~v~gp~v~~G-Y~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDl 471 (631)
T PRK07769 395 KVGVSEWAVIVDPETASELPDGQI--GEIWLHGNNIGTG-YWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDY 471 (631)
T ss_pred CcCCCcEEEEEcCCCCcCCCCCCE--EEEEecCCCcccc-ccCChhHHHHHHhhhcccccccccccCcccCCCeeecccc
Confidence 9999999999994 6999999986 9999977655432 46677888888864210 123469999999
Q ss_pred EEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeee--eEEEeecC-------------------CCCCceE
Q 004825 597 FERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLE--TAAIGVPP-------------------PDGGPEQ 655 (728)
Q Consensus 597 ~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~--~~Vv~~~~-------------------~~~g~~~ 655 (728)
|+++ ||+|+|+||.||+||++|+||+|.|||++|.+.||.|.+ ++|+++++ +..| +.
T Consensus 472 g~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~g-e~ 549 (631)
T PRK07769 472 GVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTS-EQ 549 (631)
T ss_pred ccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCC-cc
Confidence 9995 999999999999999999999999999999634899998 89998888 4456 78
Q ss_pred EEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCC-Cc-ccceEEECC--CCCCCCCCchhHHHHHHHHHh
Q 004825 656 LTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNP-LF-KVSHVVPLP--SLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 656 l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~-~~-~P~~i~~v~--~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+++++++.+ +....+.++|.++ ++++|+. |+ .|..+++++ +||+|++|||+|++|++.+.+
T Consensus 550 ~~a~v~~~~-~~~~~~~~~l~~~----~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 550 LVIVAERAP-GAHKLDPQPIADD----IRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD 614 (631)
T ss_pred EEEEEEecC-ccccccHHHHHHH----HHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence 999999876 4213455666665 5555553 45 477888876 699999999999999998765
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-65 Score=578.07 Aligned_cols=499 Identities=22% Similarity=0.237 Sum_probs=402.5
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++|+++|+++.+. ++||+||.++++++|+.|++.|+++|++|+|+++++++++++++||+++
T Consensus 9 ~~~~~~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~ 80 (528)
T PRK07470 9 LAHFLRQAARRFPDRIALVWGDR--------SWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRL 80 (528)
T ss_pred HHHHHHHHHHHCCCceEEEECCc--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 34567788889999999998766 8999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC--CcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
|++++|+++.++.+++.+++++++++++++++......+ .+..... ..++.+... .....+.++
T Consensus 81 G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 146 (528)
T PRK07470 81 GAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAA-----AVRAASPDLTHVVAIGGA---------RAGLDYEAL 146 (528)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHH-----HHHhhCCcCceEEEeCCC---------cccccHHHH
Confidence 999999999999999999999999999999875431110 1111111 122222111 112345555
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh--cCCCCCCEEEecCCcchhhhHHH
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIVAWPTNLGWMMGPWL 414 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~ 414 (728)
...... .........++++++|+|||||||.||||+++|+++...+...... .++..+|+++...|++|..++..
T Consensus 147 ~~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 223 (528)
T PRK07470 147 VARHLG---ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ 223 (528)
T ss_pred HhcCCC---CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH
Confidence 433211 1122334567899999999999999999999999987655433322 25678899999999999999876
Q ss_pred HHHHhhhCcEEEEeCC-CCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 415 VYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
++ .++.|++.++++. ..++..+++.|+++++|++.++|++++.+.+.......+++++|.+++||+++++....++.+
T Consensus 224 ~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~ 302 (528)
T PRK07470 224 LC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALA 302 (528)
T ss_pred HH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHH
Confidence 54 6778888877753 356788999999999999999999999998876555567889999999999999999888877
Q ss_pred ccCCCCeEecccccccccccccCCcc-------cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCC
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLL-------QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGAS 566 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~-------~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~ 566 (728)
.++ .++++.||+||+++.++..... .....+++|+|++|+.++|+|++|++++.|+. |||++.+.....+
T Consensus 303 ~~g-~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~i~~~~~~~g 379 (528)
T PRK07470 303 KLG-KVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGET--GEICVIGPAVFAG 379 (528)
T ss_pred HhC-cHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCc--eEEEEeCCccchh
Confidence 765 7899999999998654433211 12234688999999999999999999999986 9999976654432
Q ss_pred ccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEee
Q 004825 567 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 646 (728)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~ 646 (728)
|+++++.++..|.. | ||+|||+|++++||+++++||.||+||++|+||+|.|||++|. .+|.|.+|+|++.
T Consensus 380 -y~~~~~~~~~~~~~-----~--~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~ 450 (528)
T PRK07470 380 -YYNNPEANAKAFRD-----G--WFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLL-THPAVSEVAVLGV 450 (528)
T ss_pred -hcCCHHHHHhhhcC-----C--cEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHH-hCCCceEEEEEec
Confidence 45666777766642 3 9999999999999999999999999999999999999999995 8999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 647 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
+++..| +.++++++..+ +. ..+..+ +++++++.||+|++|..++++++||+|++||++|+.|++++++.
T Consensus 451 ~~~~~~-~~~~~~~~~~~-~~-~~~~~~----~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 519 (528)
T PRK07470 451 PDPVWG-EVGVAVCVARD-GA-PVDEAE----LLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER 519 (528)
T ss_pred cCcccC-ceeEEEEEECC-CC-CCCHHH----HHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhc
Confidence 888766 78888888876 43 245444 44468889999999999999999999999999999999999873
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=574.28 Aligned_cols=496 Identities=20% Similarity=0.198 Sum_probs=400.5
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+.|.++++++|+++|+++.+. ++||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++
T Consensus 23 l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~ 94 (542)
T PRK06155 23 LPAMLARQAERYPDRPLLVFGGT--------RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWL 94 (542)
T ss_pred HHHHHHHHHHHCCCCeEEEeCCc--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 45678889999999999998876 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhc--CCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQ--APLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
|++++|++|.++.+++..+++++++++++++........ ...... ....+.++.... . .....|...
T Consensus 95 G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~ 163 (542)
T PRK06155 95 GAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALE-----AADPGDLPLPAVWLLDAPAS---V---SVPAGWSTA 163 (542)
T ss_pred CCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHH-----HhcccccCcceEEEecCccc---c---ccccccchh
Confidence 999999999999999999999999999999875431110 111100 112233322110 0 000111110
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHH
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 416 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 416 (728)
.. .. ...........++++|+|+|||||||.||||+++|+++..........+++++++++++..|++|..++..++
T Consensus 164 ~~-~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~ 240 (542)
T PRK06155 164 PL-PP--LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFF 240 (542)
T ss_pred hh-cc--cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHH
Confidence 00 00 0011112334678999999999999999999999999988877777888999999999999999999998889
Q ss_pred HHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 417 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 417 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.........+++|.++.|| +++.+.+++.+.++
T Consensus 241 ~~l~~G~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~~ 317 (542)
T PRK06155 241 QALLAGATYVLEPR-FSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERFG 317 (542)
T ss_pred HHHHcCceEEeeCC-CCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHcC
Confidence 99999999998764 4678999999999999999999999999887655555677899887666 56788888877764
Q ss_pred CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccc---cCCCccccCcc
Q 004825 497 YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLI---FGASSTLLNAN 573 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~---~~~~~~~~~~~ 573 (728)
.+++|.||+||++.++.... .....+++|.|.++++++|+|++++++|.|+. |||++++.. +.. .|+++++
T Consensus 318 -~~v~~~YG~tE~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gei~v~~~~~~~~~~-GY~~~~~ 391 (542)
T PRK06155 318 -VDLLDGYGSTETNFVIAVTH--GSQRPGSMGRLAPGFEARVVDEHDQELPDGEP--GELLLRADEPFAFAT-GYFGMPE 391 (542)
T ss_pred -CCEEeeecccccCccccCCC--CCCCCCCcCccCCCceEEEECCCCCCCCCCCc--eEEEEecCCccccch-hhcCCHH
Confidence 88999999999987654432 23456789999999999999999999999986 999996642 221 2455666
Q ss_pred ccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004825 574 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653 (728)
Q Consensus 574 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~ 653 (728)
.+...|.. | ||+|||+|++++||+++++||.||+||++|.+|+|.|||++|. .||+|.+|+|++++++..+
T Consensus 392 ~~~~~~~~-----~--~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~v~~~~~~- 462 (542)
T PRK06155 392 KTVEAWRN-----L--WFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLL-SHPAVAAAAVFPVPSELGE- 462 (542)
T ss_pred HHHHhhcC-----C--cEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeecccccC-
Confidence 66666632 3 9999999999999999999999999999999999999999995 8999999999999887666
Q ss_pred eEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHH
Q 004825 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 720 (728)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 720 (728)
+.+.+++++.. +. ..+..+++ ++++++|+.|++|..|+++++||+|++||++|++|++++-
T Consensus 463 ~~~~~~v~~~~-~~-~~~~~~~~----~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~ 523 (542)
T PRK06155 463 DEVMAAVVLRD-GT-ALEPVALV----RHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV 523 (542)
T ss_pred ceEEEEEEECC-CC-CCCHHHHH----HHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence 78888888776 44 34555544 4677889999999999999999999999999999998764
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=572.30 Aligned_cols=504 Identities=21% Similarity=0.228 Sum_probs=418.4
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
....++|.++++.+|+++|+.+.+. .+||+||+++++++|+.|.+.|+++|++|+|+++++.++++++|||+
T Consensus 6 ~~l~~~l~~~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~ 77 (521)
T PRK06187 6 LTIGRILRHGARKHPDKEAVYFDGR--------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVP 77 (521)
T ss_pred CCHHHHHHHHHHHCCCceEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 3466778889999999999999887 89999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC--CcEEEEcCCCCCcccccCCCCcCH
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA--PLAIVIPAKGSSFSMKLRDGDISW 333 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~ 333 (728)
++|++++|+++.++.+++..+++.+++++++++..... .. .+....+ ...+++...... ........+
T Consensus 78 ~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 148 (521)
T PRK06187 78 KIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVP------LLAAILPQLPTVRTVIVEGDGPAA---PLAPEVGEY 148 (521)
T ss_pred HcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHH------HHHHHhhccCCccEEEEecCcccc---ccccccccH
Confidence 99999999999999999999999999999999875421 11 2222221 123333222110 111234455
Q ss_pred HHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH
Q 004825 334 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW 413 (728)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 413 (728)
.++...... ........++++++++|||||||.||+|.++|+++.+...+....++++++|++++.+|++|..++.
T Consensus 149 ~~~~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 224 (521)
T PRK06187 149 EELLAAASD----TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWG 224 (521)
T ss_pred HHHhhcCCc----cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHH
Confidence 555443221 2223345678999999999999999999999999999888888889999999999999999999987
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
..+.++..|+++++++.. ++..+++.|+++++|++.++|++++.|.+........++++|.+++|||++++++.+++.+
T Consensus 225 ~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~ 303 (521)
T PRK06187 225 LPYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKE 303 (521)
T ss_pred HHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHH
Confidence 767799999999998764 7788999999999999999999999999877655667889999999999999999999988
Q ss_pred ccCCCCeEecccccccccccccCCcccc-----cccccccCCCCCceEEEEcCCCCccCC--CCCceeEEEEeccccCCC
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQA-----QSLAAFSTPAMGCKLFILGNDGCPIPQ--NVPGMGELALSPLIFGAS 566 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~-----~~~~~iG~p~~~~~v~i~d~~g~~vp~--g~~giGEl~v~~~~~~~~ 566 (728)
.+ +++++|.||+||++........... ....++|+|++++.++|+|++++++|. |.. |||++.+.....+
T Consensus 304 ~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~--Gel~v~~~~~~~~ 380 (521)
T PRK06187 304 KF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEV--GEIIVRGPWLMQG 380 (521)
T ss_pred Hh-CcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCe--eEEEEECcchhhh
Confidence 77 6899999999999865554433222 256789999999999999999999998 775 9999976654432
Q ss_pred ccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEee
Q 004825 567 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 646 (728)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~ 646 (728)
|+.+++.+.+.|.. | ||+|||+|++++||.+++.||.|++||++|.+|+|.+||++|. .+++|.+++|++.
T Consensus 381 -y~~~~~~~~~~~~~-----~--~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~ 451 (521)
T PRK06187 381 -YWNRPEATAETIDG-----G--WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALY-GHPAVAEVAVIGV 451 (521)
T ss_pred -hcCCHHHHHHHhhC-----C--ceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHH-hCCCceEEEEEec
Confidence 34566666666642 3 9999999999999999999999999999999999999999995 8999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 647 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+++..+ +.++++++..+ +. ..+..+++ ++++++|+++++|..++++++||+|++||++|++|++++++
T Consensus 452 ~~~~~~-~~~~~~v~~~~-~~-~~~~~~l~----~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 452 PDEKWG-ERPVAVVVLKP-GA-TLDAKELR----AFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE 519 (521)
T ss_pred cCCCcC-ceEEEEEEECC-CC-CCCHHHHH----HHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence 887666 78999998876 43 34545444 46788899999999999999999999999999999999874
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=571.97 Aligned_cols=497 Identities=19% Similarity=0.196 Sum_probs=399.0
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++|+++|+++.+. ++||+||.++++++|.+|.+.|+++|++|+|+++|++++++++|||+++
T Consensus 25 l~~~~~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 96 (527)
T TIGR02275 25 LTDILRDQAARYPDAIAIICGNR--------QWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKL 96 (527)
T ss_pred HHHHHHHHHHHCCCceEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHc
Confidence 44667788899999999998776 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
|++++++++..+.+++.+++++++++++++++..... ...... .+....+. ..+.+..... ........
T Consensus 97 G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 167 (527)
T TIGR02275 97 GIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLF-DYDAFARQLQSKLPTLRNIIVAGQTR--------VEAELFLW 167 (527)
T ss_pred CeEEeccccccCHHHHHHHHHhcCCcEEEEcCccccc-chHHHHHHHHhhCCcceEEEEecCCC--------CcchhhHH
Confidence 9999999999999999999999999999998653110 000000 11111111 1112211100 00011111
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH--H
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW--L 414 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~ 414 (728)
..... .........++++++++|||||||.||||+++|+++...+......+.++.+|++++..|++|.+++. .
T Consensus 168 ~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~ 243 (527)
T TIGR02275 168 LESPA----EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPG 243 (527)
T ss_pred hhCcC----ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHH
Confidence 11110 11122345679999999999999999999999999999888887888999999999999999988874 5
Q ss_pred HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhc
Q 004825 415 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 494 (728)
++.++..|+++++.+. .++..+++.++++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++.+.
T Consensus 244 ~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 322 (527)
T TIGR02275 244 ALGVFYAGGCVVLAPD-PSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAV 322 (527)
T ss_pred HHHHHhcCCeEEECCC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999988653 577889999999999999999999999987765556678899999999999999999998877
Q ss_pred cCCCCeEecccccccccccccCCcccccccccccCCC-CCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcc
Q 004825 495 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 573 (728)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~ 573 (728)
++ +++++.||+||+++..............++|+|+ ++..++|+|++|++++.|+. |||++.+..... .|+++++
T Consensus 323 ~g-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~--Gei~v~g~~~~~-gY~~~~~ 398 (527)
T TIGR02275 323 FG-CQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGET--GMLLTRGPYTFR-GYYKAPE 398 (527)
T ss_pred hC-CeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCc--eEEEecCCccch-hhcCChh
Confidence 74 8999999999976543322211222346889999 48999999999999999987 999996665443 2456677
Q ss_pred ccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004825 574 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653 (728)
Q Consensus 574 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~ 653 (728)
.+.+.|..+ | ||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+++|++.+++..+
T Consensus 399 ~~~~~~~~d----g--~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~~- 470 (527)
T TIGR02275 399 HNAAAFDAE----G--FYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLL-AHPAVHDAALVSMPDELLG- 470 (527)
T ss_pred HhHhhcCcC----C--CEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHH-hCCCceEEEEEecCCcccc-
Confidence 777766543 2 9999999999999999999999999999999999999999995 9999999999999888777
Q ss_pred eEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhh-CCCCcccceEEECCCCCCCCCCchhHHHHH
Q 004825 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK-LNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716 (728)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 716 (728)
+.+++++++.+ +. .+..+++ ++++++ +|+|++|..++++++||+|++||++|++|+
T Consensus 471 ~~~~a~vv~~~-~~--~~~~~l~----~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 471 EKSCAFIVVRD-PA--LKAAQLR----RFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred cEEEEEEEECC-CC--CCHHHHH----HHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 78999998876 32 4445444 467664 999999999999999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-64 Score=566.34 Aligned_cols=495 Identities=21% Similarity=0.225 Sum_probs=403.3
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+++.+++ .+|+++|+.+.+. +.+||.||.++++++|++|++.|+++||+|++++++++++++++|||+++
T Consensus 5 l~~~~~~~~-~~~~~~a~~~~~~-------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~ 76 (504)
T PRK07514 5 LFDALRAAF-ADRDAPFIETPDG-------LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRA 76 (504)
T ss_pred HHHHHHHHh-hCCCCeEEEeCCC-------CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 445566677 8999999988544 28999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCc-EEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPL-AIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
|++++|+++.++.+++..++++++++++++++...... .......... ++.++.. ....+.+..
T Consensus 77 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 141 (504)
T PRK07514 77 GAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWL-----SKIAAAAGAPHVETLDAD----------GTGSLLEAA 141 (504)
T ss_pred CcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHH-----HHhhhccCCceEEEecCC----------CcccHHHhh
Confidence 99999999999999999999999999999987543110 0111111111 2222211 111122221
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HHHH
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVY 416 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~ 416 (728)
.. .+.........+++++||+|||||||.||||+++|+++...+......++++++|++++..|+.|..++ ..++
T Consensus 142 ~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 217 (504)
T PRK07514 142 AA----APDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATN 217 (504)
T ss_pred hh----cCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHH
Confidence 11 111222344567999999999999999999999999999988887778899999999999999998887 5688
Q ss_pred HHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 417 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 417 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
.+++.|+++++.+. .++..+++.+ .++|++..+|+++..+++........++++|.+++||+++++++.+++.+.++
T Consensus 218 ~~l~~G~~~~~~~~-~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~ 294 (504)
T PRK07514 218 VALLAGASMIFLPK-FDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTG 294 (504)
T ss_pred HHHhcCcEEEECCC-CCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhC
Confidence 99999999999864 4677888888 47999999999999998876555667889999999999999999999888764
Q ss_pred CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccCCCccccCcccc
Q 004825 497 YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY 575 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~ 575 (728)
.++++.||+||++...... ........++|.|++|++++|+| ++++++|.|+. |||+|.+..+..+ |+.+++.+
T Consensus 295 -~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~--Gel~i~~~~~~~g-y~~~~~~~ 369 (504)
T PRK07514 295 -HAILERYGMTETNMNTSNP-YDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEI--GMIEVKGPNVFKG-YWRMPEKT 369 (504)
T ss_pred -CcceeecccccccccccCC-ccccccCcccccCCCCcEEEEEECCCCCCCCCCCc--eEEEEecCCcccc-ccCCchhh
Confidence 7899999999987643322 22223456899999999999999 78999999986 9999976654432 45667777
Q ss_pred ccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceE
Q 004825 576 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQ 655 (728)
Q Consensus 576 ~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~ 655 (728)
++.|..+ | ||+|||+|+++++|.++++||.||+||++|++|+|.|||+++. .+++|.+++|++.+++..+ +.
T Consensus 370 ~~~~~~~----~--~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~ 441 (504)
T PRK07514 370 AEEFRAD----G--FFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEID-ELPGVVESAVIGVPHPDFG-EG 441 (504)
T ss_pred hhhcccC----C--CeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEeCCCCCcC-ce
Confidence 7778643 2 9999999999999999999999999999999999999999995 8999999999999887766 78
Q ss_pred EEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 656 LTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 656 l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
++++++... +. ..+..+ +++.++++|++|++|..++.++++|+|++||++|++|+++++++
T Consensus 442 ~~~~~~~~~-~~-~~~~~~----l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~ 502 (504)
T PRK07514 442 VTAVVVPKP-GA-ALDEAA----ILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL 502 (504)
T ss_pred EEEEEEECC-CC-CCCHHH----HHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence 999999876 33 234444 44568888999999999999999999999999999999998764
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=571.65 Aligned_cols=510 Identities=18% Similarity=0.181 Sum_probs=400.4
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
....+|+..+.++|+++++.+... +..+++||.||+++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~ 86 (539)
T PRK07008 11 LISSLIAHAARHAGDTEIVSRRVE----GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSG 86 (539)
T ss_pred CHHHHHHHHHhhCCCceEEEeecc----CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 455678888888899888876422 1234899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcccccCCCCcCHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWL 334 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~ 334 (728)
+|++++|++|.++.+++.++++++++++++++..... .. .+...... ..+.+..... .... .....+++
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~ 158 (539)
T PRK07008 87 SGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLP------LVDALAPQCPNVKGWVAMTDAAH-LPAG-STPLLCYE 158 (539)
T ss_pred cCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHH------HHHHHHhhCCCceEEEEEccCCc-cccC-CcccccHH
Confidence 9999999999999999999999999999999865321 11 11111111 1122221111 0000 11234555
Q ss_pred HHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHH--HHHHhcCCCCCCEEEecCCcchhhhH
Q 004825 335 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA--DAWCHMDIRKADIVAWPTNLGWMMGP 412 (728)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~~~ 412 (728)
++...... ........++++++++|||||||.||||+++|++++.... .....++++++|+++...|++|..+.
T Consensus 159 ~l~~~~~~----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 234 (539)
T PRK07008 159 TLVGAQDG----DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAW 234 (539)
T ss_pred HHhcccCC----CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhH
Confidence 55433211 1112245678899999999999999999999999864332 22345778899999999999988777
Q ss_pred HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHH
Q 004825 413 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 492 (728)
Q Consensus 413 ~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 492 (728)
..++.++..|+++++.+...++..+++.+++++||++.++|+++..|++.......+++++|.+++||+++++++.+++.
T Consensus 235 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~ 314 (539)
T PRK07008 235 GLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFE 314 (539)
T ss_pred HHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHH
Confidence 66688999999999987666788899999999999999999999999887655556788999999999999999999998
Q ss_pred hccCCCCeEecccccccccccccCCcc------cc----cccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccc
Q 004825 493 GRALYKPVIEYCGGTEIGGGFITGSLL------QA----QSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLI 562 (728)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~------~~----~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~ 562 (728)
+.+ ++++++.||+||++...+..... .. ....++|+|++|++++|+|++++++|.+...+|||++++..
T Consensus 315 ~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~ 393 (539)
T PRK07008 315 DEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPW 393 (539)
T ss_pred HHh-CCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCc
Confidence 777 48999999999998654332211 00 11357899999999999999999998653235999997766
Q ss_pred cCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeE
Q 004825 563 FGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETA 642 (728)
Q Consensus 563 ~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~ 642 (728)
+.. .|+++++ ..| ..| ||+|||+|++++||.++++||+||+||++|++|+|.|||++|. .||.|.+++
T Consensus 394 ~~~-gy~~~~~---~~~-----~~g--~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~v~~~~ 461 (539)
T PRK07008 394 VID-RYFRGDA---SPL-----VDG--WFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAV-AHPAVAEAA 461 (539)
T ss_pred cch-hhcCChh---hhh-----cCC--CcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHH-hCCceeEEE
Confidence 543 2333331 122 233 9999999999999999999999999999999999999999995 999999999
Q ss_pred EEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 643 AIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 643 Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
|++++++..+ +.++++|+..+ +. ..+.+ .++++++++|++|++|..|+++++||+|++||++|++|++++++.
T Consensus 462 v~~~~~~~~~-~~~~~~v~~~~-~~-~~~~~----~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~ 534 (539)
T PRK07008 462 CIACAHPKWD-ERPLLVVVKRP-GA-EVTRE----ELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDY 534 (539)
T ss_pred EEecCCchhc-cceEEEEEeCC-CC-ccCHH----HHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence 9999887766 78888888765 43 23444 455568888999999999999999999999999999999999875
Q ss_pred c
Q 004825 723 D 723 (728)
Q Consensus 723 ~ 723 (728)
.
T Consensus 535 ~ 535 (539)
T PRK07008 535 V 535 (539)
T ss_pred c
Confidence 4
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=588.10 Aligned_cols=517 Identities=16% Similarity=0.116 Sum_probs=385.7
Q ss_pred hHhhhhcccccCCCCCCeEEEEecc-CCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDE-GDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAI 255 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~ 255 (728)
....++|.+.++++|+++|+.+... .+..+.++.+||+||.++++++|++|.++|+++||+|+|+++|+++|++++|||
T Consensus 43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 122 (660)
T PLN02861 43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (660)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3456778888999999999976411 011234568999999999999999999999999999999999999999999999
Q ss_pred HHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC---CcEEEEcCCCCCccc---ccCC
Q 004825 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA---PLAIVIPAKGSSFSM---KLRD 328 (728)
Q Consensus 256 lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~---~~~~~i~~~~~~~~~---~~~~ 328 (728)
+++|+++|||++.++.+++.++|++++++++|+++... ... ....... ..++.+......... ....
T Consensus 123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 196 (660)
T PLN02861 123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI------SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGV 196 (660)
T ss_pred HHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH------HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCc
Confidence 99999999999999999999999999999999976431 111 1111111 122222211100000 0001
Q ss_pred CCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcC-----CCCCCEEEec
Q 004825 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD-----IRKADIVAWP 403 (728)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-----~~~~d~~l~~ 403 (728)
...+|.++...... ........++++|+|+|||||||.||||+++|++++..+......++ +.++|+++++
T Consensus 197 ~~~~~~~~~~~~~~----~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 272 (660)
T PLN02861 197 SCFSWEEFSLMGSL----DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSY 272 (660)
T ss_pred EEEEHHHHHHhCcc----cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEE
Confidence 12456666543321 11122346799999999999999999999999999988766554443 4788999999
Q ss_pred CCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCC--------------------
Q 004825 404 TNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN-------------------- 463 (728)
Q Consensus 404 ~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~-------------------- 463 (728)
+|++|.++....+.+|+.|+++++.. .++..+++.|+++++|+++++|++++.|.+..
T Consensus 273 lPl~H~~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~ 350 (660)
T PLN02861 273 LPLAHVYDQVIETYCISKGASIGFWQ--GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYN 350 (660)
T ss_pred CcHHHHHHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999998755556899999999874 36788999999999999999999999886410
Q ss_pred -----------------CCCCC-------CC-cCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCc
Q 004825 464 -----------------CIDGY-------DW-SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL 518 (728)
Q Consensus 464 -----------------~~~~~-------~l-~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 518 (728)
..... .+ +++|.+++||+++++++.+ +.+.++...++|.||+||+++.++....
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~ 429 (660)
T PLN02861 351 YKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIA 429 (660)
T ss_pred HHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeeccc
Confidence 00000 01 4799999999999999754 5555554579999999999765443322
Q ss_pred ccccccccccCCCCCceEEEEc--CCC-CccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCc
Q 004825 519 LQAQSLAAFSTPAMGCKLFILG--NDG-CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGD 595 (728)
Q Consensus 519 ~~~~~~~~iG~p~~~~~v~i~d--~~g-~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGD 595 (728)
......+++|+|++|++++|+| ++| ..++.+.. |||+|.++.+.. .|+++++.|++.|. +| ||+|||
T Consensus 430 ~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~--GEi~vrGp~v~~-GY~~~pe~T~~~f~-----dG--w~~TGD 499 (660)
T PLN02861 430 NVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPR--GEICLRGNTLFS-GYHKRQDLTEEVLI-----DG--WFHTGD 499 (660)
T ss_pred ccCCCCCCccCccCceEEEEEEccccCcccCCCCCc--eeEEEcCCcccc-cccCCHHHHHhhhh-----cc--CcccCc
Confidence 2223457999999999999998 334 33344444 999996654433 25678888988884 24 999999
Q ss_pred eEEEecCceEEEEcccCCeeec-CceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCC-------C
Q 004825 596 VFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSN-------Y 667 (728)
Q Consensus 596 l~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~-------~ 667 (728)
+|++|+||+|+|+||+||+||+ +|++|+|.|||++|. .||.|.+|+|++.+ .+ +.++|+|++.... .
T Consensus 500 lg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~-~~p~V~~a~V~G~~---~~-~~~~A~vv~~~~~l~~~~~~~ 574 (660)
T PLN02861 500 IGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYS-RCPLIASIWVYGNS---FE-SFLVAVVVPDRQALEDWAANN 574 (660)
T ss_pred eEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHh-cCCCeeEEEEEecC---Cc-ceeEEEEEcCHHHHHHHHHHc
Confidence 9999999999999999999997 799999999999995 99999999999865 22 6899999976310 0
Q ss_pred -CCCCHH------HHHHHHHHHHHh-----hCCCCcccceEEECC-CC-----CCCCCCchhHHHHHHHHHh
Q 004825 668 -TPPDLN------QLRMSFNSAVQK-----KLNPLFKVSHVVPLP-SL-----PRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 668 -~~~~~~------~l~~~l~~~l~~-----~Lp~~~~P~~i~~v~-~l-----P~t~~GKvdR~~L~~~~~~ 721 (728)
...+.. ..+..+.+.+.+ .|+.+.++..+..++ .+ .+|+++|+.|+.+.+.|++
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02861 575 NKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKD 646 (660)
T ss_pred CCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHH
Confidence 001111 233344444443 489999998888865 46 8999999999999988876
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=577.16 Aligned_cols=513 Identities=18% Similarity=0.175 Sum_probs=391.3
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
....|.++++++|+++|+++.+. ++||+||+++++++|++|.++|+++||+|+|+++|++++++++|||+++
T Consensus 16 ~~~~l~~~~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~ 87 (579)
T PLN03102 16 PITFLKRASECYPNRTSIIYGKT--------RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMA 87 (579)
T ss_pred HHHHHHHHHHhCCCCeEEEECCc--------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 45668888889999999998776 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhc-------CCcEEEEcCCCCCcccccCCCCc
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQ-------APLAIVIPAKGSSFSMKLRDGDI 331 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~ 331 (728)
|++++|++|.++.+++.++|+.+++++||+++....... .+.... ...++.++...... .......
T Consensus 88 G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 160 (579)
T PLN03102 88 GAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAR-----EVLHLLSSEDSNLNLPVIFIHEIDFPK--RPSSEEL 160 (579)
T ss_pred CcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHH-----HHHhhccccccccCceEEEeccccccc--CCccccc
Confidence 999999999999999999999999999999765321100 111111 11233333211100 0011234
Q ss_pred CHHHHHHhhhccccCc-cccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhh
Q 004825 332 SWLDFLERVRKLKENE-FAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMM 410 (728)
Q Consensus 332 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 410 (728)
++.++........... .......++++++|+|||||||.||||+++|+++..........+.+...+++++..|++|..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~ 240 (579)
T PLN03102 161 DYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCN 240 (579)
T ss_pred CHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhc
Confidence 5665554322100000 001124568999999999999999999999999755444444455677788999999999999
Q ss_pred hHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHH
Q 004825 411 GPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 490 (728)
Q Consensus 411 ~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~ 490 (728)
++...+.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++.+.++
T Consensus 241 g~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~ 319 (579)
T PLN03102 241 GWTFTWGTAARGGTSVCMRH-VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKK 319 (579)
T ss_pred chhHHHHHHHhcCcEEeecc-CChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHH
Confidence 88777888999999998864 46678999999999999999999999998764433344567888999999999998888
Q ss_pred HHhccCCCCeEecccccccccccccCCccc-------------ccccccccCCCCCceEEEEcC-CCCccCCCCCceeEE
Q 004825 491 LMGRALYKPVIEYCGGTEIGGGFITGSLLQ-------------AQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGEL 556 (728)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-------------~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl 556 (728)
+.+ + +.++++.||+||+++.++...... ....+..+.|++ .+.+.|+ .++++|.+....|||
T Consensus 320 ~~~-~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl 395 (579)
T PLN03102 320 VQR-L-GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEI 395 (579)
T ss_pred HHH-c-CCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEE
Confidence 764 4 478999999999986433221100 001122233443 4556664 467777531114999
Q ss_pred EEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCC
Q 004825 557 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 636 (728)
Q Consensus 557 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p 636 (728)
+|++..+.. .|+++++.+++.|.. | ||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||
T Consensus 396 ~v~g~~~~~-GY~~~~~~t~~~f~~-----g--w~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~p 466 (579)
T PLN03102 396 VIKGSSIMK-GYLKNPKATSEAFKH-----G--WLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLY-KYP 466 (579)
T ss_pred EEECcchhh-hhcCChhhhHhhhcc-----C--ceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHH-hCC
Confidence 997655433 245677778777742 3 9999999999999999999999999999999999999999996 899
Q ss_pred CeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHH------HHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCch
Q 004825 637 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQ------LRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKV 710 (728)
Q Consensus 637 ~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~------l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKv 710 (728)
.|.+++|++++++..+ +.++++|++.+ +. ..+... -...+++.++++||+|++|..++++++||+|++||+
T Consensus 467 ~V~~a~vv~~~~~~~~-~~~~a~v~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi 543 (579)
T PLN03102 467 KVLETAVVAMPHPTWG-ETPCAFVVLEK-GE-TTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKI 543 (579)
T ss_pred CcceeEEEeccCcccc-ceeEEEEEecC-cc-cccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccc
Confidence 9999999999998777 89999999876 43 121110 134567789999999999999999999999999999
Q ss_pred hHHHHHHHHHhhc
Q 004825 711 MRRVLRKQLAQLD 723 (728)
Q Consensus 711 dR~~L~~~~~~~~ 723 (728)
+|++|+++++++.
T Consensus 544 ~r~~L~~~~~~~~ 556 (579)
T PLN03102 544 LKPKLRDIAKGLV 556 (579)
T ss_pred cHHHHHHHHHHhh
Confidence 9999999987743
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-65 Score=584.77 Aligned_cols=504 Identities=19% Similarity=0.191 Sum_probs=386.0
Q ss_pred hhhhcccccCCCCCCeEEEEeccCC-CCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGD-GGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...+++++++++|+++|+++.+..+ ..+.++.+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||++
T Consensus 36 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~~~ 114 (612)
T PRK12476 36 LISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAAIK 114 (612)
T ss_pred HHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHHHH
Confidence 4456788888999999999854211 112345899999999999999999986 99999999999999999999999999
Q ss_pred cCcEEEec-CCCCC--HHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC----CcEEEEcCCCCCcccccCCCC
Q 004825 258 AGYIVVSI-ADSFA--SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA----PLAIVIPAKGSSFSMKLRDGD 330 (728)
Q Consensus 258 aG~~~vpl-~p~~~--~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~ 330 (728)
+|++++|+ ++.++ .+++.+++++++++++|+++..... + ........ ..++.++...
T Consensus 115 aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~---~--~~~~~~~~~~~~~~~i~~~~~~----------- 178 (612)
T PRK12476 115 AGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEA---V--EGFLRNLPRLRRPRVIAIDAIP----------- 178 (612)
T ss_pred cCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHH---H--HHHHhhcccccCceEEEecccc-----------
Confidence 99999999 68877 7899999999999999998653210 0 01111111 1122221100
Q ss_pred cCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcC-CCCCCEEEecCCcchh
Q 004825 331 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD-IRKADIVAWPTNLGWM 409 (728)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~~~ 409 (728)
.. ...........+++++||+|||||||.||||+++|+++.+.+......++ +.+++++++++|++|+
T Consensus 179 -------~~----~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~ 247 (612)
T PRK12476 179 -------DS----AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHD 247 (612)
T ss_pred -------cc----ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccc
Confidence 00 00011122345789999999999999999999999999887776666677 7889999999999999
Q ss_pred hhHHHHHHHhhhCcEEEEeCCC-C--CcchHHHHHH--HhCCcEEEecHHHHHHHHcCCC----CCCCCCcCeeEEEeec
Q 004825 410 MGPWLVYASLLNGASIALYNGS-P--LGSGFAKFVQ--DAKVTMLGVVPSIVRTWKSTNC----IDGYDWSSIRCFGSTG 480 (728)
Q Consensus 410 ~~~~~~~~~L~~G~~lvl~~~~-~--~~~~l~~~i~--~~~vt~l~~~Ps~l~~l~~~~~----~~~~~l~~lr~i~~gG 480 (728)
.++..++.+++.|+++++..+. . ++..+++.++ ++++|++..+|+++..++.... ....+++++| +++||
T Consensus 248 ~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg 326 (612)
T PRK12476 248 MGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGS 326 (612)
T ss_pred cchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecc
Confidence 9997766777777777776532 2 6778999995 4899999999999887765321 1234678999 99999
Q ss_pred CCCCHHHHHHHHhccC-----CCCeEecccccccccccccCCcccc--------------------------cccccccC
Q 004825 481 EASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQA--------------------------QSLAAFST 529 (728)
Q Consensus 481 e~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG~ 529 (728)
+++++++.+++.+.++ ...++|.||+||++..++...+... ...+++|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~ 406 (612)
T PRK12476 327 EPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQ 406 (612)
T ss_pred cCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCC
Confidence 9999999998887652 2458999999998765433221100 01247899
Q ss_pred CCCCceEEEEcCC-CCccCCCCCceeEEEEeccccCCCccccCccccccccccCC------------CCCCceeEEeCce
Q 004825 530 PAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP------------SRNGQILRRHGDV 596 (728)
Q Consensus 530 p~~~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p------------~~~g~~~y~TGDl 596 (728)
|++|++++|+|++ |+++|.|+. |||+|.+..+.. .|+++++.|++.|...+ ..++.+||+|||+
T Consensus 407 ~~~g~~v~ivd~~~g~~~~~g~~--GEl~v~g~~v~~-GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDl 483 (612)
T PRK12476 407 VARSQWAVIVDPDTGAELPDGEV--GEIWLHGDNIGR-GYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDL 483 (612)
T ss_pred cCCCCEEEEEeCCCCcCCCCCCE--EEEEEcCCcccc-cccCChHHHHHHHhhhhccccccccccccccCCCCeeecccc
Confidence 9999999999988 999999986 999997665543 35667888888885311 0123469999999
Q ss_pred EEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeee--eEEEeecCCCCCceEEEEEEEecCCCCCCCCHHH
Q 004825 597 FERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLE--TAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQ 674 (728)
Q Consensus 597 ~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~--~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~ 674 (728)
|+++ ||+|+|+||+||+||++|+||+|.|||++|.+.||.|.+ ++|++.+++. + +.++++++..+ +....+.++
T Consensus 484 g~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~-~~~~~~v~~~~-~~~~~~~~~ 559 (612)
T PRK12476 484 GVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-N-ERLVIVAERAA-GTSRADPAP 559 (612)
T ss_pred ceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-c-ceEEEEEEecC-CcccccHHH
Confidence 9985 999999999999999999999999999999635899999 6667777765 5 78999999876 431346677
Q ss_pred HHHHHHHHHHhhCCCCcc-cceEEECC--CCCCCCCCchhHHHHHHHHHh
Q 004825 675 LRMSFNSAVQKKLNPLFK-VSHVVPLP--SLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 675 l~~~l~~~l~~~Lp~~~~-P~~i~~v~--~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+.+++++++..+ |++ |..+++++ +||+|++|||+|++|++++.+
T Consensus 560 l~~~~~~~l~~~---~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 560 AIDAIRAAVSRR---HGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLD 606 (612)
T ss_pred HHHHHHHHHHHh---hCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence 777777666543 566 57777776 699999999999999999865
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-64 Score=568.82 Aligned_cols=508 Identities=21% Similarity=0.195 Sum_probs=414.9
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
+...++|..+++++|+++|+++.+. .+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+
T Consensus 11 ~~l~~~l~~~a~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~ 82 (523)
T PRK08316 11 QTIGDILRRSARRYPDKTALVFGDR--------SWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACA 82 (523)
T ss_pred CCHHHHHHHHHHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 4566778888899999999998876 99999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
++|++++|+++..+.+++..+++.+++++++++....... ....+......+.+..... ..........+.++
T Consensus 83 ~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 155 (523)
T PRK08316 83 RAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTA-----EAALALLPVDTLILSLVLG--GREAPGGWLDFADW 155 (523)
T ss_pred hcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHH-----HHHhhhcCccceeeeeccc--ccccccchhhHHHH
Confidence 9999999999999999999999999999999987542110 0111111111111111000 00011122334433
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH-HH
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LV 415 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~ 415 (728)
..... ..........+++++++|||||||.||+|.++|++++..+......+++.++|+++...|+.|..++. .+
T Consensus 156 ~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~ 231 (523)
T PRK08316 156 AEAGS----VAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFL 231 (523)
T ss_pred HhcCC----CccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHH
Confidence 32211 11123445678999999999999999999999999998888777888999999999999999998874 46
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhcc
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 495 (728)
+.++..|+++++.+. .++..+++.|+++++|++.++|+++..+.+.......+++++|.+++||+.++.++.+.+.+.+
T Consensus 232 ~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~ 310 (523)
T PRK08316 232 GPYLYVGATNVILDA-PDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERL 310 (523)
T ss_pred HHHHhcCceEEEecC-CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHc
Confidence 667899999999864 5678899999999999999999999999887655566788999999999999999999999888
Q ss_pred CCCCeEecccccccccccccCCcc-cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccc
Q 004825 496 LYKPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 574 (728)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~ 574 (728)
+++++++.||+||++.+.+..... .....+++|+|+++++++|+|++|++++.|+. |||++.+.....+ |+.+++.
T Consensus 311 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gei~v~~~~~~~~-y~~~~~~ 387 (523)
T PRK08316 311 PGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEV--GEIVHRSPQLMLG-YWDDPEK 387 (523)
T ss_pred CCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCc--ceEEEECCchhhh-hcCCHHH
Confidence 788999999999998755443332 22345789999999999999999999999986 9999966654332 4556667
Q ss_pred cccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004825 575 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 654 (728)
Q Consensus 575 ~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~ 654 (728)
++..|.. +||+|||+|++++||.++++||.||+||++|.+|+|.+||+.|. .+|+|.+++|++.+++..+ +
T Consensus 388 ~~~~~~~-------~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~ 458 (523)
T PRK08316 388 TAEAFRG-------GWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALY-THPAVAEVAVIGLPDPKWI-E 458 (523)
T ss_pred HHHHhhC-------CCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHH-hCCChheEeEecccCcccC-C
Confidence 7766632 39999999999999999999999999999999999999999995 8999999999999888777 8
Q ss_pred EEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 655 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
.++++++.++ +. ..+.++ +.++++++|++|++|..+++++++|+|++||++|++|++++++.
T Consensus 459 ~~~~~v~~~~-~~-~~~~~~----l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 520 (523)
T PRK08316 459 AVTAVVVPKA-GA-TVTEDE----LIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGA 520 (523)
T ss_pred eEEEEEEECC-CC-CCCHHH----HHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence 8999999876 43 234444 45567888999999999999999999999999999999999864
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-64 Score=567.80 Aligned_cols=501 Identities=18% Similarity=0.206 Sum_probs=402.8
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
+..++|+++++ |+++|+++.+. ++||+||.++++++|++|.+.|+++|++|+++++|++++++++|||++
T Consensus 26 ~~~~~~~~~a~--p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~ 95 (536)
T PRK10946 26 PLTDILTRHAA--SDAIAVICGER--------QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLK 95 (536)
T ss_pred cHHHHHHHhhC--CCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHH
Confidence 34566777776 99999998776 899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHh-hHhhcC-CcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYR-VIDAQA-PLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+|++++++++..+.+++..++++++++++++++...... .-.... +..... ...+++... .....+.+
T Consensus 96 ~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~ 165 (536)
T PRK10946 96 LGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFS-DDDFLNTLVAEHSSLRVVLLLND---------DGEHSLDD 165 (536)
T ss_pred cCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccc-hHHHHHHHHhhCCCceEEEEecC---------CCCccHHH
Confidence 999888777777888899999999999999986431100 000011 111111 122222211 11223444
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH--
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-- 413 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-- 413 (728)
....... ........++++++++|||||||.||||+++|+++...+......++++++|++++..|++|.+++.
T Consensus 166 ~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~ 241 (536)
T PRK10946 166 AINHPAE----DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSP 241 (536)
T ss_pred HhhCccc----ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhh
Confidence 3332211 1222345679999999999999999999999999999988888888999999999999999988763
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCC--CCCCCCCcCeeEEEeecCCCCHHHHHHH
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN--CIDGYDWSSIRCFGSTGEASNVDEYLWL 491 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~--~~~~~~l~~lr~i~~gGe~l~~~~~~~~ 491 (728)
.++.+|..|+++++.+. .++..+++.++++++|++.++|+++..|++.. ......++++|.+++||+++++++.+++
T Consensus 242 ~~~~~l~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~ 320 (536)
T PRK10946 242 GALGVFLAGGTVVLAPD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRI 320 (536)
T ss_pred hHHHHhhcCcEEEECCC-CCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHH
Confidence 57899999999988653 56778899999999999999999999997652 2233457899999999999999999988
Q ss_pred HhccCCCCeEecccccccccccccCCcccccccccccCCC-CCceEEEEcCCCCccCCCCCceeEEEEeccccCCCcccc
Q 004825 492 MGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 570 (728)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~ 570 (728)
.+.+ ++++++.||+||+++.++...........++|+|+ +++.++|+|++|++++.|+. |||++.+.....+ |++
T Consensus 321 ~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g~~~~~G-Y~~ 396 (536)
T PRK10946 321 PAEL-GCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEV--GRLMTRGPYTFRG-YYK 396 (536)
T ss_pred HHhc-CCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCc--cEEEEecCccchh-hcC
Confidence 8766 48999999999976544322222223457899998 79999999999999999987 9999976655432 456
Q ss_pred CccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCC
Q 004825 571 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 650 (728)
Q Consensus 571 ~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~ 650 (728)
+++.+.+.|..+. ||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+++|++.+++.
T Consensus 397 ~~~~t~~~~~~d~------~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~ 469 (536)
T PRK10946 397 SPQHNASAFDANG------FYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLL-RHPAVIHAALVSMEDEL 469 (536)
T ss_pred CcccchhhcccCC------ceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHH-hCCCcceEEEEcCCCcc
Confidence 7778888886543 9999999999999999999999999999999999999999995 99999999999998877
Q ss_pred CCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhh-CCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 651 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK-LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
.| +.+++++++++ + .+..++++ .+++. ||+|++|..+++++++|+|++||++|++|+++++++.
T Consensus 470 ~g-~~~~a~vv~~~-~---~~~~~l~~----~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 470 MG-EKSCAFLVVKE-P---LKAVQLRR----FLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred cC-ceEEEEEEeCC-C---CCHHHHHH----HHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhc
Confidence 77 78999999876 2 45555555 56654 9999999999999999999999999999999988753
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=560.25 Aligned_cols=480 Identities=21% Similarity=0.246 Sum_probs=389.3
Q ss_pred ccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE
Q 004825 184 SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVV 263 (728)
Q Consensus 184 ~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~v 263 (728)
+.+++.+||++|+.+...+ ..+||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++
T Consensus 2 ~~~a~~~p~~~a~~~~~~~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v 75 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALG------RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYV 75 (488)
T ss_pred chhhhhCCCceEEEecCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEE
Confidence 3466789999999873211 2899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhcc
Q 004825 264 SIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKL 343 (728)
Q Consensus 264 pl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
|+++.++.+++.+++++++++++|+++...... .....++++.......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 124 (488)
T PRK09088 76 PLNWRLSASELDALLQDAEPRLLLGDDAVAAGR-------------------------------TDVEDLAAFIASADAL 124 (488)
T ss_pred eeCccCCHHHHHHHHHhCCCCEEEEcchhhccc-------------------------------ccccchhhhhhhcccc
Confidence 999999999999999999999999987432100 0011122222111100
Q ss_pred ccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH-HHHHHhhhC
Q 004825 344 KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LVYASLLNG 422 (728)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~L~~G 422 (728)
. ........++++++++|||||||.||+|+++|+++...+........+..+|++++..|++|.+++. .++.++..|
T Consensus 125 ~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g 202 (488)
T PRK09088 125 E--PADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVG 202 (488)
T ss_pred c--cccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcC
Confidence 0 1111234568899999999999999999999999988877776667788999999999999999984 577889999
Q ss_pred cEEEEeCCCCCcchHHHHHH--HhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCe
Q 004825 423 ASIALYNGSPLGSGFAKFVQ--DAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV 500 (728)
Q Consensus 423 ~~lvl~~~~~~~~~l~~~i~--~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (728)
+++++.++ ..+..++..+. ++++|++..+|+++..+.+........++++|.+++||++++....+.+.+. ++++
T Consensus 203 ~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v 279 (488)
T PRK09088 203 GSILVSNG-FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPM 279 (488)
T ss_pred CEEEEcCC-CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCce
Confidence 99988754 45677777775 4899999999999999987654445567899999999999999887777653 5889
Q ss_pred EecccccccccccccCCc--ccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccc
Q 004825 501 IEYCGGTEIGGGFITGSL--LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY 578 (728)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~ 578 (728)
++.||+||++..+..... ......+++|.|.++++++|+|+++++++.|++ |||+|.+..+.. .|+++++.+++.
T Consensus 280 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~-gY~~~~~~~~~~ 356 (488)
T PRK09088 280 VDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSP-GYWRRPQATARA 356 (488)
T ss_pred eeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCc--eEEEEECCccch-hhcCChhhhhhh
Confidence 999999999865432211 112345789999999999999999999999987 999997665433 245566667666
Q ss_pred cccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEE
Q 004825 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 658 (728)
Q Consensus 579 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a 658 (728)
|..+ +||+|||+|++++||.++++||.||+||++|++|+|.|||++|. .+|.|.+++|++.+++..| +..++
T Consensus 357 ~~~~------g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~ 428 (488)
T PRK09088 357 FTGD------GWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLA-DHPGIRECAVVGMADAQWG-EVGYL 428 (488)
T ss_pred hcCC------CCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHH-hCCCcceEEEEeCCCccCC-ceeEE
Confidence 6432 39999999999999999999999999999999999999999995 8999999999999887666 77888
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 659 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 659 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
+++..+ +. ..+.. .+.+++++++++|++|..++++++||+|++||++|++|++++.+.
T Consensus 429 ~v~~~~-~~-~~~~~----~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 429 AIVPAD-GA-PLDLE----RIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAG 486 (488)
T ss_pred EEEECC-CC-CCCHH----HHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence 888776 43 23433 455568888999999999999999999999999999999998764
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-64 Score=574.50 Aligned_cols=519 Identities=16% Similarity=0.156 Sum_probs=406.5
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
..++|..++..+|+++|+++.+. .++.+||+||.++++++|++|++ .|+++||+|+++++|+++++++++||++
T Consensus 12 ~~~~l~~~a~~~~~~~a~~~~~~-----~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~ 86 (576)
T PRK05620 12 LTRILEYGSTVHGDTTVTTWGGA-----EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVAC 86 (576)
T ss_pred HHHHHHHHHHhCCCceEEEEcCC-----ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 34667788899999999988543 23589999999999999999997 7999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC--cEEEEcCCCCCc---ccccCCCCcC
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP--LAIVIPAKGSSF---SMKLRDGDIS 332 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~---~~~~~~~~~~ 332 (728)
+|++++|++|.++.+++.+++++++++++|+++.... .+ ......... .++++....... .........+
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 161 (576)
T PRK05620 87 MGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAE---QL--GEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYS 161 (576)
T ss_pred cCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHH---HH--HHHHhhCccccEEEEecCcccccchhcccccccccc
Confidence 9999999999999999999999999999999874321 00 022222211 122222111100 0000112345
Q ss_pred HHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHH--HHhcCCCCCCEEEecCCcchhh
Q 004825 333 WLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA--WCHMDIRKADIVAWPTNLGWMM 410 (728)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~ 410 (728)
|.++..... .........++++++++|||||||.||||+++|+++....... ...+++..+|++++..|++|++
T Consensus 162 ~~~l~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~ 237 (576)
T PRK05620 162 YEALLDGRS----TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVL 237 (576)
T ss_pred HHHHhhcCC----CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhh
Confidence 677664321 1122234567999999999999999999999999986544332 2347788999999999999999
Q ss_pred hHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHH
Q 004825 411 GPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 490 (728)
Q Consensus 411 ~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~ 490 (728)
+...++.++..|+++++.....++..+++.|+++++|++..+|+++..++........+..++|.+++||+++++++.++
T Consensus 238 g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~ 317 (576)
T PRK05620 238 SWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKA 317 (576)
T ss_pred hhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHH
Confidence 99888899999999999876667889999999999999999999999887653333334568999999999999999998
Q ss_pred HHhccCCCCeEecccccccccccccCCccc-------ccccccccCCCCCceEEEEcCCCCccC--CCCCceeEEEEecc
Q 004825 491 LMGRALYKPVIEYCGGTEIGGGFITGSLLQ-------AQSLAAFSTPAMGCKLFILGNDGCPIP--QNVPGMGELALSPL 561 (728)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~iG~p~~~~~v~i~d~~g~~vp--~g~~giGEl~v~~~ 561 (728)
+.+.++ +++++.||+||++...+...+.. .....++|++.++++++|+|+ |++++ .|.. |||++.+.
T Consensus 318 ~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~~--Gel~v~g~ 393 (576)
T PRK05620 318 WEERYG-VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRNE--GEIQVRGN 393 (576)
T ss_pred HHHHhC-CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCCCCc--eEEEEEcC
Confidence 887764 78999999999986544332211 012347899999999999998 77775 3444 99999776
Q ss_pred ccCCCccccCcccc----ccccccCCCC------CCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHH
Q 004825 562 IFGASSTLLNANHY----DVYFSGMPSR------NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 631 (728)
Q Consensus 562 ~~~~~~~~~~~~~~----~~~f~~~p~~------~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l 631 (728)
.+..+ |+++++.+ ...|..+++. ...+||+|||+|++++||.++++||.||+||++|++|++.|||++|
T Consensus 394 ~~~~g-Y~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l 472 (576)
T PRK05620 394 WVTAS-YYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYI 472 (576)
T ss_pred ccccc-ccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHH
Confidence 55432 45566666 6666654421 1235999999999999999999999999999999999999999999
Q ss_pred hcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchh
Q 004825 632 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 711 (728)
Q Consensus 632 ~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvd 711 (728)
. .||.|.+|+|++.+++..| +.++++++..+ +. ..+ ....+.|+++++++||+|++|..|+++++||+|++||++
T Consensus 473 ~-~~p~v~~~~vv~~~~~~~g-~~~~a~v~~~~-~~-~~~-~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~ 547 (576)
T PRK05620 473 M-AAPEVVECAVIGYPDDKWG-ERPLAVTVLAP-GI-EPT-RETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFD 547 (576)
T ss_pred h-cCCCceEEEEEeccCCCcC-ceeEEEEEecC-CC-Ccc-cccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCc
Confidence 6 8999999999999988777 78888888776 43 111 122356666899999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 004825 712 RRVLRKQLAQ 721 (728)
Q Consensus 712 R~~L~~~~~~ 721 (728)
|++|++++++
T Consensus 548 r~~L~~~~~~ 557 (576)
T PRK05620 548 KKDLRQHLAD 557 (576)
T ss_pred HHHHHHHHhc
Confidence 9999999985
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-64 Score=569.85 Aligned_cols=508 Identities=19% Similarity=0.197 Sum_probs=410.2
Q ss_pred cchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Q 004825 175 FVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLA 254 (728)
Q Consensus 175 ~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA 254 (728)
+.|..+. +.++++++|+++|+.+.+. .+||.||.++++++|++|.+.|+++|++|+|+++++++++++++|
T Consensus 16 ~~n~~~~-~~~~a~~~~~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a 86 (542)
T PRK07786 16 RQNWVNQ-LARHALMQPDAPALRFLGN--------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLA 86 (542)
T ss_pred ccCHHHH-HHHHHHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 3455444 6667888999999998877 899999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC--CcEEEEcCCCCCcccccCCCCcC
Q 004825 255 IVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA--PLAIVIPAKGSSFSMKLRDGDIS 332 (728)
Q Consensus 255 ~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ 332 (728)
|+++|++++|+++..+.+++..+++++++++++++....... . ......+ ...+++... . ..+...
T Consensus 87 ~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~-~------~~~~~~ 154 (542)
T PRK07786 87 ANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVA---T--AVRDIVPLLSTVVVAGGS-S------DDSVLG 154 (542)
T ss_pred HHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHH---H--HhhhccCccceEEEecCC-C------cccccC
Confidence 999999999999999999999999999999999987532100 0 0101111 122222110 0 112345
Q ss_pred HHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCC-CCCCEEEecCCcchhhh
Q 004825 333 WLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDI-RKADIVAWPTNLGWMMG 411 (728)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~ 411 (728)
+.++...... .........+++++++|||||||.||||+++|+++...+......+++ ..++++++..|+.|.++
T Consensus 155 ~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 230 (542)
T PRK07786 155 YEDLLAEAGP----AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAG 230 (542)
T ss_pred HHHHhhccCC----CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHH
Confidence 5555443221 112234566889999999999999999999999999888777777777 67889999999999999
Q ss_pred HHHHHHHhhhCcEEEEeC-CCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHH
Q 004825 412 PWLVYASLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 490 (728)
Q Consensus 412 ~~~~~~~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~ 490 (728)
+..++.++..|+++++.+ ...++..+++.|+++++|+++++|+++..|+......... .++|.+++||++++++++++
T Consensus 231 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~ 309 (542)
T PRK07786 231 IGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQ 309 (542)
T ss_pred HHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHH
Confidence 988999999999999975 2347788999999999999999999999998765433322 36999999999999999999
Q ss_pred HHhccCCCCeEecccccccccccccCCcc-cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccc
Q 004825 491 LMGRALYKPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 569 (728)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~ 569 (728)
+.+.+++.++++.||+||++...+..... ......++|+|++|+.++|+|+++++++.|+. |||++.+..+..+ |+
T Consensus 310 ~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~g-y~ 386 (542)
T PRK07786 310 MAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEV--GEIVYRAPTLMSG-YW 386 (542)
T ss_pred HHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCc--eEEEEEChhhhhh-hc
Confidence 99988889999999999998654332221 11345689999999999999999999999986 9999966544332 45
Q ss_pred cCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCC
Q 004825 570 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 649 (728)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~ 649 (728)
++++.+...|.. | ||+|||++++++||.++++||.||+||++|++|++.|||++|. .||.|.+++|++.+++
T Consensus 387 ~~~~~~~~~f~~-----~--~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~ 458 (542)
T PRK07786 387 NNPEATAEAFAG-----G--WFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLA-SHPDIVEVAVIGRADE 458 (542)
T ss_pred CCHHHHHHHhhC-----C--cccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCc
Confidence 667777777742 3 9999999999999999999999999999999999999999995 8999999999998877
Q ss_pred CCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhccc
Q 004825 650 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 725 (728)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 725 (728)
..+ +.++++++... +...... +.+.+.+++++++|++|..++++++||+|++||++|++|++++.+...+
T Consensus 459 ~~~-~~~~~~v~~~~-~~~~~~~----~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~ 528 (542)
T PRK07786 459 KWG-EVPVAVAAVRN-DDAALTL----EDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVNV 528 (542)
T ss_pred ccC-ceEEEEEEECC-CCCCCCH----HHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhhch
Confidence 666 78888888765 3212333 3455578889999999999999999999999999999999999885543
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=569.49 Aligned_cols=505 Identities=18% Similarity=0.206 Sum_probs=397.7
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
..+.|.++++++|+++|+++.+. ++||.||.++++++|++|.+. |+++||+|+|+++|++++++++|||++
T Consensus 26 ~~~~l~~~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~ 97 (562)
T PRK12492 26 VVEVFERSCKKFADRPAFSNLGV--------TLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALR 97 (562)
T ss_pred HHHHHHHHHHhCCCCeeEecCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 45667888899999999987665 899999999999999999985 999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcC-------------CC--CC-
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPA-------------KG--SS- 321 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------~~--~~- 321 (728)
+|++++|++|.++.+++.+++++++++++++++....... .+............. .. ..
T Consensus 98 ~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (562)
T PRK12492 98 AGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQ-----EVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKV 172 (562)
T ss_pred cCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHH-----HhhhccCceEEEeechhhccccccchhcccccccc
Confidence 9999999999999999999999999999999764321110 000000000000000 00 00
Q ss_pred ---cccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcC-----
Q 004825 322 ---FSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD----- 393 (728)
Q Consensus 322 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~----- 393 (728)
...........|.++...... ....+.....+++++|+|||||||.||||+++|+++...+......+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~ 249 (562)
T PRK12492 173 KKMVPAYHLPQAVPFKQALRQGRG---LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPD 249 (562)
T ss_pred cccccccCCcccccHHHHHhccCC---CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccc
Confidence 000001122445555433211 111223456789999999999999999999999999877665544332
Q ss_pred ----CCC-CCEEEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCC
Q 004825 394 ----IRK-ADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDG 467 (728)
Q Consensus 394 ----~~~-~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~ 467 (728)
+.. +++++...|++|.++. +.++..+..|+++++.....++..+++.|+++++|++..+|+++..|++......
T Consensus 250 ~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 329 (562)
T PRK12492 250 GQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKD 329 (562)
T ss_pred ccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccc
Confidence 233 3567888999999987 4567778899988877654567789999999999999999999999988765555
Q ss_pred CCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccC
Q 004825 468 YDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIP 547 (728)
Q Consensus 468 ~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp 547 (728)
.+++++|.+++||+++++++.+++.+.+ ++++++.||+||++..++..........+++|+|+++++++|+|+++++++
T Consensus 330 ~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~ 408 (562)
T PRK12492 330 LDFSALKLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELP 408 (562)
T ss_pred ccccceeEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCC
Confidence 6788999999999999999998887765 589999999999987654433322334568999999999999999999999
Q ss_pred CCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHH
Q 004825 548 QNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEI 627 (728)
Q Consensus 548 ~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eI 627 (728)
.|+. |||+|++..+.. .|+++++.+.+.|.. ..||+|||+|+++++|.+++.||.|++||++|++|+|.||
T Consensus 409 ~g~~--Gel~v~g~~~~~-gY~~~~~~t~~~~~~------~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eI 479 (562)
T PRK12492 409 LGER--GELCIKGPQVMK-GYWQQPEATAEALDA------EGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEI 479 (562)
T ss_pred CCCc--eEEEEeCCcccc-ccccCchhhhhcccC------CCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHH
Confidence 9986 999996654433 246677777777753 2399999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCC
Q 004825 628 ERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTAT 707 (728)
Q Consensus 628 E~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~ 707 (728)
|++|. .||.|.+++|++.++...+ +.++++++..+ +. .+.+ .++++++++|+.|++|..++++++||+|++
T Consensus 480 E~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~~--~~~~----~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~ 550 (562)
T PRK12492 480 EDVVM-AHPKVANCAAIGVPDERSG-EAVKLFVVARD-PG--LSVE----ELKAYCKENFTGYKVPKHIVLRDSLPMTPV 550 (562)
T ss_pred HHHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCC-CC--CCHH----HHHHHHHHhcccccCCcEEEEeccCCCCCC
Confidence 99996 8999999999999887766 78888888755 22 3434 455568889999999999999999999999
Q ss_pred CchhHHHHHHH
Q 004825 708 NKVMRRVLRKQ 718 (728)
Q Consensus 708 GKvdR~~L~~~ 718 (728)
||++|++|+++
T Consensus 551 GK~~r~~L~~~ 561 (562)
T PRK12492 551 GKILRRELRDI 561 (562)
T ss_pred CceeHHHHHhh
Confidence 99999999875
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=568.59 Aligned_cols=506 Identities=20% Similarity=0.224 Sum_probs=404.0
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++||++|+++.++ +++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 25 l~~~~~~~~~~~pd~~a~~~~~~-------~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~ 97 (547)
T PRK06087 25 LADYWQQTARAMPDKIAVVDNHG-------ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKV 97 (547)
T ss_pred HHHHHHHHHHHCCCceEEEcCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 44668888889999999997653 28999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
|++++|++|.++.+++.+++++++++++++++..... ...+.. ........ .++.+..... ......+.+
T Consensus 98 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 170 (547)
T PRK06087 98 GAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQT-RPVDLILPLQNQLPQLQQIVGVDKLAP------ATSSLSLSQ 170 (547)
T ss_pred CcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccc-cHHHHHHHHHhhCCCCcEEEEeCCcCC------CcCccCHHH
Confidence 9999999999999999999999999999998643211 111111 12222211 2333322111 011234444
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WL 414 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~ 414 (728)
+...... ........++++++|+|||||||.||||+++|++++.........++++++|++++..|++|.+++ ..
T Consensus 171 ~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 246 (547)
T PRK06087 171 IIADYEP----LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHG 246 (547)
T ss_pred HhccCCc----ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHH
Confidence 4332211 112234567899999999999999999999999998887777777889999999999999999987 46
Q ss_pred HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhc
Q 004825 415 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 494 (728)
++.++..|+++++.+. .++..+++.|+++++|++..+|+++..++........+++++|.+++||+++++++.+.+.+.
T Consensus 247 ~~~~l~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~ 325 (547)
T PRK06087 247 VTAPFLIGARSVLLDI-FTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR 325 (547)
T ss_pred HHHHHhcCCEEEecCC-CCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc
Confidence 8899999999999764 567889999999999999988777777766554455677899999999999999998877653
Q ss_pred cCCCCeEecccccccccccccCCccc-ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcc
Q 004825 495 ALYKPVIEYCGGTEIGGGFITGSLLQ-AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 573 (728)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~ 573 (728)
++++++.||+||++.......... .....++|+|++|+.++|+|+++++++.|+. |||++.+..+.. .|+++++
T Consensus 326 --~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~-gy~~~~~ 400 (547)
T PRK06087 326 --GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCE--GEEASRGPNVFM-GYLDEPE 400 (547)
T ss_pred --CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCc--ceEEEecccccc-cccCCHH
Confidence 689999999999986544332211 1234578999999999999999999999986 999996665443 2455666
Q ss_pred ccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004825 574 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653 (728)
Q Consensus 574 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~ 653 (728)
.+.+.|..+ | ||+|||+++++++|+++++||.||+||++|.+|+|.+||++|. .+|+|.+++|++.+++..|
T Consensus 401 ~~~~~~~~~----g--~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g- 472 (547)
T PRK06087 401 LTARALDEE----G--WYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILL-QHPKIHDACVVAMPDERLG- 472 (547)
T ss_pred HHHHHhCCC----C--CcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHH-hCCCeeEEEEEecCCCCcC-
Confidence 676666432 2 9999999999999999999999999999999999999999995 8999999999999887777
Q ss_pred eEEEEEEEecCCCCCCCCHHHHHHHHHHHH-HhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAV-QKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l-~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
++++++++..+ ..+..+..++.+ ++ ++.++++++|..|.++++||+|.|||++|++|++++.+
T Consensus 473 ~~~~~~v~~~~-~~~~~~~~~~~~----~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~ 536 (547)
T PRK06087 473 ERSCAYVVLKA-PHHSLTLEEVVA----FFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMR 536 (547)
T ss_pred ceEEEEEEECC-CCCCCCHHHHHH----HHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHH
Confidence 89999999865 221344444444 44 35899999999999999999999999999999998876
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-64 Score=565.07 Aligned_cols=490 Identities=20% Similarity=0.210 Sum_probs=382.6
Q ss_pred ccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE
Q 004825 184 SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVV 263 (728)
Q Consensus 184 ~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~v 263 (728)
..+++++|+++|+++.+.+ .++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++|++++
T Consensus 4 ~~~a~~~p~~~a~~~~~~~------~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~ 77 (501)
T PRK13390 4 GTHAQIAPDRPAVIVAETG------EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT 77 (501)
T ss_pred chhhhhCCCCcEEEecCCC------eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 3466789999999875321 3899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhcc
Q 004825 264 SIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKL 343 (728)
Q Consensus 264 pl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
|+++.++.+++.+++++++++++++++.... ............+.+... ......+++......
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-- 141 (501)
T PRK13390 78 AINHHLTAPEADYIVGDSGARVLVASAALDG------LAAKVGADLPLRLSFGGE--------IDGFGSFEAALAGAG-- 141 (501)
T ss_pred ccccCCCHHHHHHHHHhcCCcEEEEcchhhh------HHHHhhhccceEEEecCc--------ccccccHHHHhcccC--
Confidence 9999999999999999999999999764311 000000000011111100 011112322211100
Q ss_pred ccCccccccCCCCCceEEEecCCCCCCCceEEe--cCcHHHHH----HHHHHHhcCCCCCCEEEecCCcchhhhHHHHHH
Q 004825 344 KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPW--TNATPFKA----AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 417 (728)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~--sh~~l~~~----~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (728)
+.....+++++|+|||||||.||||++ +|+++... .......+++..+|+++..+|++|+.++...+.
T Consensus 142 ------~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~ 215 (501)
T PRK13390 142 ------PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSM 215 (501)
T ss_pred ------CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHH
Confidence 001122357999999999999999995 55655432 112234577889999999999999998855556
Q ss_pred HhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHhcc
Q 004825 418 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495 (728)
Q Consensus 418 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 495 (728)
.+..|+++++.+. .++..+++.|+++++|++.++|+++..|+.... ....+++++|.+++||+++++++.+.+.+.+
T Consensus 216 ~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~ 294 (501)
T PRK13390 216 VHALGGTVVLAKR-FDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL 294 (501)
T ss_pred HHhcCceEEEcCC-cCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc
Confidence 6788999988764 567899999999999999999999999886532 1334578999999999999999988888765
Q ss_pred CCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcccc
Q 004825 496 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY 575 (728)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~ 575 (728)
+ .++++.||+||++.++...........+++|+|++| .++|+|++|++++.|+. |||+|.+..+.. .|+++++.+
T Consensus 295 ~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~-gy~~~~~~t 369 (501)
T PRK13390 295 G-PIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRI--GTVYFERDRLPF-RYLNDPEKT 369 (501)
T ss_pred C-CceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecCCccc-cccCChhhh
Confidence 4 789999999999864433222222345689999999 69999999999999987 999996654433 345677777
Q ss_pred ccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceE
Q 004825 576 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQ 655 (728)
Q Consensus 576 ~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~ 655 (728)
++.|... +..||+|||+|++++||++++.||.|++||++|++|+|.|||++|. .||.|.+++|++++++..+ +.
T Consensus 370 ~~~~~~~----~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~~~~-e~ 443 (501)
T PRK13390 370 AAAQHPA----HPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALT-MHPAVHDVAVIGVPDPEMG-EQ 443 (501)
T ss_pred HHhhccC----CCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-ce
Confidence 7766431 1239999999999999999999999999999999999999999995 8999999999999988777 88
Q ss_pred EEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHH
Q 004825 656 LTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716 (728)
Q Consensus 656 l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 716 (728)
+++++++.. +. .. ..++.+.|++.++++||.||+|..++++++||+|++||++|++|+
T Consensus 444 ~~~~v~~~~-~~-~~-~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 444 VKAVIQLVE-GI-RG-SDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred eEEEEEecC-CC-Cc-chhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 999998876 43 12 234456777889999999999999999999999999999999984
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-64 Score=564.04 Aligned_cols=492 Identities=16% Similarity=0.144 Sum_probs=408.3
Q ss_pred hhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Q 004825 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (728)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~ 260 (728)
++|.++++.+|+++|+.+.+. .+||+||.++++++|.+|.+.|+++|++|+++++++.++++++|||+++|+
T Consensus 6 ~~l~~~a~~~p~~~~~~~~~~--------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~ 77 (503)
T PRK04813 6 ETIEEFAQTQPDFPAYDYLGE--------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGH 77 (503)
T ss_pred HHHHHHHHhCCCceEEEeCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 567778889999999998776 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhh
Q 004825 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERV 340 (728)
Q Consensus 261 ~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (728)
+++|+++.++.+++..+++.++++++++++....... .. ....+.++....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~----------------~~~~~~~~~~~~ 128 (503)
T PRK04813 78 AYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEIL-------------GI----------------PVITLDELKDIF 128 (503)
T ss_pred EEecCCCCChHHHHHHHHHhcCCCEEEeccccccccc-------------CC----------------cEEehHHhhhhh
Confidence 9999999999999999999999999999875310000 00 011111211111
Q ss_pred hccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhh
Q 004825 341 RKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLL 420 (728)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (728)
.. ...........++++++++|||||||.||||.++|+++...+.+....+++..+++++...|++|+.+++.++.+|.
T Consensus 129 ~~-~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 207 (503)
T PRK04813 129 AT-GNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLA 207 (503)
T ss_pred hc-cccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHh
Confidence 00 00011123456788999999999999999999999999998888888899999999999999999999988899999
Q ss_pred hCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCC
Q 004825 421 NGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 498 (728)
Q Consensus 421 ~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (728)
.|+++++++.. .++..+++.++++++|++..+|++++.++.........++++|.++++|+++++.+.+++.+.++++
T Consensus 208 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~ 287 (503)
T PRK04813 208 SGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSA 287 (503)
T ss_pred cCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCc
Confidence 99999998753 3567899999999999999999999887665444455678999999999999999999999988778
Q ss_pred CeEecccccccccccccCCc----ccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccc
Q 004825 499 PVIEYCGGTEIGGGFITGSL----LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 574 (728)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~ 574 (728)
.+++.||+||++..++.... .......++|+|.++++++|+|++|.+++.|+. |||++.+.....+ |+++++.
T Consensus 288 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~g-y~~~~~~ 364 (503)
T PRK04813 288 TIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQ--GEIVISGPSVSKG-YLNNPEK 364 (503)
T ss_pred eEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCc--eEEEEeccccccc-cCCChhH
Confidence 99999999999764432211 112334579999999999999999999999986 9999966544332 4556667
Q ss_pred cccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004825 575 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 654 (728)
Q Consensus 575 ~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~ 654 (728)
+...|..+ .|.+||+|||+|++ .||++++.||.||+||++|++|+|.+||+++. .+|+|.+++|++.+++..+ +
T Consensus 365 ~~~~~~~~---~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~ 438 (503)
T PRK04813 365 TAEAFFTF---DGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLR-QSSYVESAVVVPYNKDHKV-Q 438 (503)
T ss_pred hHHhhccC---CCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHH-hCCCcceEEEEEeeCCCCc-c
Confidence 76666543 36679999999999 99999999999999999999999999999995 8999999999987766555 7
Q ss_pred EEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 655 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
.+++++++.+ +. .....++.+.++++++++|+.|++|..++++++||+|+|||++|++|++++++
T Consensus 439 ~~~~~v~~~~-~~-~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 503 (503)
T PRK04813 439 YLIAYVVPKE-ED-FEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK 503 (503)
T ss_pred EEEEEEEecc-cc-ccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence 8999998776 32 22344677788889999999999999999999999999999999999998763
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-64 Score=601.23 Aligned_cols=502 Identities=15% Similarity=0.092 Sum_probs=377.3
Q ss_pred CCCCCCCCcc--hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 004825 167 GGQWLPGAFV--NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM 244 (728)
Q Consensus 167 ~~~w~~~~~~--~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~ 244 (728)
+..|+..... ....++|.++++++||++|+++.++ ++||+||+++++++|+.|++.|+++||+|+|+++|
T Consensus 435 ~~~~~~~~~~~~~sl~~ll~~~a~~~pd~~Al~~~~~--------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n 506 (994)
T PRK07868 435 LARLGQINDHTRISLGRIIAEQARDAPKGEFLLFDGR--------VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMET 506 (994)
T ss_pred HHHhhhcCCCCCccHHHHHHHHHHHCCCCeEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 3455444321 2345678889999999999999776 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCccc
Q 004825 245 NVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSM 324 (728)
Q Consensus 245 s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 324 (728)
++++++++|||+++|++++|++|. +++.++++++++++||++..... .+......+++++.... ...
T Consensus 507 ~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~---------~~~~~~~~iiv~~~~~~-~~~ 573 (994)
T PRK07868 507 RPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLE---------AARQLPGRVLVLGGGES-RDL 573 (994)
T ss_pred CHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHH---------HHHhcCceEEEecCCcc-ccc
Confidence 999999999999999999999985 68999999999999999864321 11112233344322110 000
Q ss_pred ccCC--CCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEe
Q 004825 325 KLRD--GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAW 402 (728)
Q Consensus 325 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~ 402 (728)
.... ...++.+....... .+.........++++|||+|| ||||.||++.++|.+...........++++.+|++++
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~ 651 (994)
T PRK07868 574 DLPDDADVIDMEKIDPDAVE-LPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYC 651 (994)
T ss_pred cCCcchhhhhhhhcCccccc-CCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEE
Confidence 0000 00111111000000 000001112236899999999 5788888888888765544444556678899999999
Q ss_pred cCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCC
Q 004825 403 PTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEA 482 (728)
Q Consensus 403 ~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~ 482 (728)
.+|++|+++++..+.+++.|++.+++....++..+++.|++++||+++++|++++.|++.......++++||.++ |+.
T Consensus 652 ~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~--g~g 729 (994)
T PRK07868 652 LTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI--GSG 729 (994)
T ss_pred ecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe--cCC
Confidence 999999999976655555555555555457888999999999999999999999999876444445677899876 344
Q ss_pred CCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCc-eEEE-----------EcCCC--CccCC
Q 004825 483 SNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGC-KLFI-----------LGNDG--CPIPQ 548 (728)
Q Consensus 483 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~v~i-----------~d~~g--~~vp~ 548 (728)
+++++++++.+.++.++++|.||+||+++... .. .....+++|+|++|+ +++| +|++| +.++.
T Consensus 730 l~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~--~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ 806 (994)
T PRK07868 730 MPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NV--SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEV 806 (994)
T ss_pred CCHHHHHHHHHHhCchheeeeeeccccccccc-cc--CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCC
Confidence 99999999998887789999999999875432 11 123457899999997 5655 35666 66888
Q ss_pred CCCceeEEEEeccccCCCccccCccc--cccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHH
Q 004825 549 NVPGMGELALSPLIFGASSTLLNANH--YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVE 626 (728)
Q Consensus 549 g~~giGEl~v~~~~~~~~~~~~~~~~--~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~e 626 (728)
|++ |||++.+... .+++. ++.+|. ++++||+|||+|++|+||+|+|+||.|||||++|.+|+|+|
T Consensus 807 ge~--Gel~~~~~~~------~~p~~t~~~~~~~-----~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~E 873 (994)
T PRK07868 807 NEV--GVLLARARGP------IDPTASVKRGVFA-----PADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEP 873 (994)
T ss_pred CCc--eEEEEecCCC------CChhhhhHhcccc-----cCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHH
Confidence 887 9999965421 13332 233442 25679999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCC
Q 004825 627 IERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTA 706 (728)
Q Consensus 627 IE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~ 706 (728)
||++|. .||+|.+|+|++++++. + +.++|||++++ +. ..+.++|++ ++++ ||.||+|..|+++++||+|+
T Consensus 874 IE~~L~-~hp~V~~aaVvg~~d~~-~-~~~~a~Vv~~~-~~-~~~~~~L~~----~l~~-l~~y~vP~~i~~v~~lP~T~ 943 (994)
T PRK07868 874 VTDALG-RIGGVDLAVTYGVEVGG-R-QLAVAAVTLRP-GA-AITAADLTE----ALAS-LPVGLGPDIVHVVPEIPLSA 943 (994)
T ss_pred HHHHHh-cCCCeeEEEEEeecCCC-C-ceEEEEEEeCC-CC-cCCHHHHHH----HHHh-CCCCcCCeEEEEeCCCCCCc
Confidence 999995 99999999999998764 4 78999999876 54 456666555 4654 89999999999999999999
Q ss_pred CCchhHHHHHHHH
Q 004825 707 TNKVMRRVLRKQL 719 (728)
Q Consensus 707 ~GKvdR~~L~~~~ 719 (728)
|||++|++|++..
T Consensus 944 sGKi~r~~L~~~~ 956 (994)
T PRK07868 944 TYRPTVSALRAAG 956 (994)
T ss_pred cccEehHHHHhcC
Confidence 9999999997653
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-64 Score=565.29 Aligned_cols=501 Identities=18% Similarity=0.184 Sum_probs=398.4
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...+.|+++++++|+++|+++.+. .+.++.+||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||++
T Consensus 8 ~l~~~~~~~a~~~p~~~a~~~~~~---~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~ 84 (517)
T PRK08008 8 HLRQMWDDLADVYGHKTALIFESS---GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAK 84 (517)
T ss_pred cHHHHHHHHHHHCCCceEEEcccC---CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 456778889999999999998653 12345899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhc---CCcEEEEcCCCCCcccccCCCCcCH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQ---APLAIVIPAKGSSFSMKLRDGDISW 333 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~ 333 (728)
+|++++|++|+++.+++.++++++++++++++.... +.. ++.+.. ...+++...... ......++
T Consensus 85 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 153 (517)
T PRK08008 85 IGAIMVPINARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQQEDATPLRHICLTRVALP-----ADDGVSSF 153 (517)
T ss_pred cCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchh------HHHHHHHhhccccCcEEEEecCCCc-----ccccccCH
Confidence 999999999999999999999999999999987532 111 222211 112222221100 01122334
Q ss_pred HHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-
Q 004825 334 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP- 412 (728)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~- 412 (728)
.+....... .........++++++|+|||||||.||||+++|+++............+..++++++..|+.|..+.
T Consensus 154 ~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 230 (517)
T PRK08008 154 TQLKAQQPA---TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQC 230 (517)
T ss_pred HHHhccCCc---cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHH
Confidence 443322111 1111234467899999999999999999999999998654433344567889999999999887665
Q ss_pred HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHH
Q 004825 413 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 492 (728)
Q Consensus 413 ~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 492 (728)
..++.++..|+++++.+. .++..+++.|+++++|++.++|++++.++..........++++.+.+++ +++++...++.
T Consensus 231 ~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~ 308 (517)
T PRK08008 231 TAAMAAFSAGATFVLLEK-YSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFE 308 (517)
T ss_pred HHHHHHHhcCcEEEEccc-cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHH
Confidence 668889999999999864 5778899999999999999999999998876443333456788887754 78888888777
Q ss_pred hccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEec----cccCCCcc
Q 004825 493 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSP----LIFGASST 568 (728)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~----~~~~~~~~ 568 (728)
+.+ ++++++.||+||++..++...........++|.|++|++++|+|++|++++.|+. |||++.+ ..+. .|
T Consensus 309 ~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~~~~--gy 383 (517)
T PRK08008 309 ERF-GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEI--GEICIKGVPGKTIFK--EY 383 (517)
T ss_pred HHh-CCeEEeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCc--ceEEEeCCCCcchhh--hH
Confidence 766 4899999999999865554444334455789999999999999999999999986 9999964 2222 24
Q ss_pred ccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecC
Q 004825 569 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 648 (728)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~ 648 (728)
+++++.+++.|..+ | ||+|||+|++++||.++++||.||+||++|++|+|.|||+++. .||.|.+++|+++++
T Consensus 384 ~~~~~~~~~~~~~~----g--~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~-~~~~v~~~~v~g~~~ 456 (517)
T PRK08008 384 YLDPKATAKVLEAD----G--WLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIA-THPKIQDIVVVGIKD 456 (517)
T ss_pred hCChHHHhhcccCC----C--CeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHH-hCCceeeEEEEccCC
Confidence 56777788888643 3 9999999999999999999999999999999999999999995 999999999999988
Q ss_pred CCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHH
Q 004825 649 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716 (728)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 716 (728)
+..+ +.++++++++. +. ..+..+ ++++++++|++|++|..++++++||+|++||++|+.|+
T Consensus 457 ~~~~-~~~~~~v~~~~-~~-~~~~~~----l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 457 SIRD-EAIKAFVVLNE-GE-TLSEEE----FFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred CCCC-ceEEEEEEECC-CC-CCCHHH----HHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 8766 78999999886 43 344444 44567888999999999999999999999999999874
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=563.64 Aligned_cols=513 Identities=17% Similarity=0.199 Sum_probs=400.6
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
.+.++|+++++++||++|++.... +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~ 86 (542)
T PRK06018 11 LCHRIIDHAARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMG 86 (542)
T ss_pred CHHHHHHHHHHhCCCceEEEeecc----CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHh
Confidence 455778888999999999985322 1235899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC--CcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+|++++|++|.++.+++..+++++++++++++........ .+..... ...+++..... .......+...+.+
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (542)
T PRK06018 87 IGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILE-----KIADKLPSVERYVVLTDAAH-MPQTTLKNAVAYEE 160 (542)
T ss_pred cCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHH-----HHHhhCCCccEEEEeccccc-ccccCccccccHHH
Confidence 9999999999999999999999999999999875421100 1111111 12222222111 00001112334555
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHH-H-HHHHHHHhcCCCCCCEEEecCCcchhhhHH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPF-K-AAADAWCHMDIRKADIVAWPTNLGWMMGPW 413 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~-~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 413 (728)
+...... ........++++++|+|||||||.||||+++|++.+ . ........++++.+|+++...|++|+.+..
T Consensus 161 ~~~~~~~----~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~ 236 (542)
T PRK06018 161 WIAEADG----DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWG 236 (542)
T ss_pred HhccCCc----ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhH
Confidence 5443211 112234566889999999999999999999999743 2 223334567889999999999999998887
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
..+.++..|+++++.....++..+++.++++++|++.++|+++..|.+.......+++++|.+++|||++++++.+++.+
T Consensus 237 ~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~ 316 (542)
T PRK06018 237 IAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED 316 (542)
T ss_pred HHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH
Confidence 67788999999998765567788999999999999999999999998766555566789999999999999999999887
Q ss_pred ccCCCCeEecccccccccccccCCcccc----------cccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEecccc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQA----------QSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIF 563 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~----------~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~ 563 (728)
+ ++++++.||+||++.+.+.+..... ....++|+|.+|++++|+|++++++|.+....|||++.+..+
T Consensus 317 -~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~ 394 (542)
T PRK06018 317 -M-GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAV 394 (542)
T ss_pred -h-CCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCc
Confidence 5 5899999999999865543321110 113578999999999999999999987532359999966554
Q ss_pred CCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEE
Q 004825 564 GASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAA 643 (728)
Q Consensus 564 ~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~V 643 (728)
.. +|++. +...+. ..+||+|||++++++||+++++||.||+||++|++|++.|||.++. .||+|.+|+|
T Consensus 395 ~~--gy~~~--~~~~~~------~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v 463 (542)
T PRK06018 395 AA--AYYRV--DGEILD------DDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAV-GHPKVAEAAV 463 (542)
T ss_pred ch--hhhcC--cccEec------CCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHH-hCCcceeEEE
Confidence 33 23332 122221 2349999999999999999999999999999999999999999995 8999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 644 IGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
++.+++..+ +.+.+++++.+ +. ..+.++ +++.++++++.|++|..++++++||+|++||++|++|++++.+.+
T Consensus 464 ~~~~~~~~~-~~~~~~v~~~~-~~-~~~~~~----l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~~ 536 (542)
T PRK06018 464 IGVYHPKWD-ERPLLIVQLKP-GE-TATREE----ILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKDYK 536 (542)
T ss_pred EeccCCCcC-ceeEEEEEeCC-CC-CCCHHH----HHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhccC
Confidence 999887766 78888888876 44 344444 444677889999999999999999999999999999999998754
Q ss_pred c
Q 004825 724 Q 724 (728)
Q Consensus 724 ~ 724 (728)
.
T Consensus 537 ~ 537 (542)
T PRK06018 537 L 537 (542)
T ss_pred C
Confidence 3
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=563.08 Aligned_cols=487 Identities=20% Similarity=0.181 Sum_probs=381.2
Q ss_pred hhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGL-DKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv-~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+|.+++ .|+++|+++.+. ++||+||.++++++|..|.+.|+ ++||+|+|+++|++++++++|||+++
T Consensus 6 ~~~l~~~~--~p~~~Al~~~~~--------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~ 75 (540)
T PRK13388 6 AQLLRDRA--GDDTIAVRYGDR--------TWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALG 75 (540)
T ss_pred HHHHHhhc--cCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhC
Confidence 34454443 799999998766 99999999999999999999999 89999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 338 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
|++++|++|.++.+++..++++++++++|+++....... .. .......+.+. ...+.+++.
T Consensus 76 Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~~-~~~~~~~i~~~-------------~~~~~~~~~ 136 (540)
T PRK13388 76 GYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLD-----GL-DLPGVRVLDVD-------------TPAYAELVA 136 (540)
T ss_pred CCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHH-----hh-cccCceEEEcc-------------chhhhhhhc
Confidence 999999999999999999999999999999875421100 00 00011122211 111223322
Q ss_pred hhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHH-HHH
Q 004825 339 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL-VYA 417 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~ 417 (728)
.... ..+.....++++++|+|||||||.||||+++|+++...+......++++.+|+++..+|+.|..++.. ++.
T Consensus 137 ~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 212 (540)
T PRK13388 137 AAGA----LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAP 212 (540)
T ss_pred cccC----cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHH
Confidence 1110 11122356799999999999999999999999999988888788899999999999999999998854 556
Q ss_pred HhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCC
Q 004825 418 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 497 (728)
Q Consensus 418 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~ 497 (728)
+|..|+++++.+. .++..+++.|+++++|++..+|+.+..++..........++++.+ + |+.+++....++.+.+ +
T Consensus 213 ~l~~G~~~v~~~~-~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~-~ 288 (540)
T PRK13388 213 AVASGAAVALPAK-FSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRF-G 288 (540)
T ss_pred HHHcCcEEEECCC-CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHh-C
Confidence 8999999988654 567889999999999999999999999887543222223456643 3 5566777777777776 4
Q ss_pred CCeEecccccccccccccCCcccccccccccCCCCCceEE-----------EEcCCCCccC-CCCCceeEEEEe-ccccC
Q 004825 498 KPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLF-----------ILGNDGCPIP-QNVPGMGELALS-PLIFG 564 (728)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~-----------i~d~~g~~vp-~g~~giGEl~v~-~~~~~ 564 (728)
++++|.||+||++.+++... .....++|+|++|++++ ++|++|++++ .|. +|||++. +..+.
T Consensus 289 ~~l~~~YG~tE~~~~~~~~~---~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~--~GEl~v~~g~~~~ 363 (540)
T PRK13388 289 CQVEDGYGSSEGAVIVVREP---GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEA--IGELVNTAGAGFF 363 (540)
T ss_pred CceecccccccccceeecCC---CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCc--ceEEEEecCCccc
Confidence 88999999999986554321 12456899999997753 5566676664 343 4999996 54443
Q ss_pred CCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEE
Q 004825 565 ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAI 644 (728)
Q Consensus 565 ~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv 644 (728)
. .|+++++.+++.|.. | ||+|||+|++++||+++++||+||+||++|++|+|.|||++|. .||+|.+|+|+
T Consensus 364 ~-gY~~~~~~t~~~~~~-----g--~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~ 434 (540)
T PRK13388 364 E-GYYNNPEATAERMRH-----G--MYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILL-RHPAINRVAVY 434 (540)
T ss_pred c-cccCChHHHHHHhhc-----C--ceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHH-hCCCceEEEEE
Confidence 2 245667777777632 3 9999999999999999999999999999999999999999995 89999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 645 GVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
+.+++..| +.+++++++.+ +. ..+.++++++++. +..|++|++|..++++++||+|++||++|++|+++...+
T Consensus 435 g~~~~~~g-~~~~~~v~~~~-~~-~~~~~~l~~~l~~--~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~ 507 (540)
T PRK13388 435 AVPDERVG-DQVMAALVLRD-GA-TFDPDAFAAFLAA--QPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWAT 507 (540)
T ss_pred EccCCCCC-ceeEEEEEECC-CC-cCCHHHHHHHHHh--hccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCC
Confidence 99887777 77888888876 44 3556666665432 235999999999999999999999999999999987654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-64 Score=619.03 Aligned_cols=513 Identities=16% Similarity=0.163 Sum_probs=405.8
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+.+.++++++|+++|+++..+ +++||+||.++++++|++|++ ++++||+|+++++|++++++++|||+++
T Consensus 617 l~~~~~~~a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~ 688 (1146)
T PRK08633 617 LAEAWIDTAKRNWSRLAVADSTG-------GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLA 688 (1146)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCC-------CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHc
Confidence 44557778889999999987532 289999999999999999987 5899999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 338 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
|++++|++|.++.+++.+++++++++++++++............... .....++.+...... ......+.+...
T Consensus 689 G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 762 (1146)
T PRK08633 689 GKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLEL-PENVKVIYLEDLKAK-----ISKVDKLTALLA 762 (1146)
T ss_pred CCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhc-ccCceEEEeehhccc-----cchhHHHHHHHH
Confidence 99999999999999999999999999999987543211100000000 001112221110000 000011111111
Q ss_pred hhhcccc--CccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH-HH
Q 004825 339 RVRKLKE--NEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LV 415 (728)
Q Consensus 339 ~~~~~~~--~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~ 415 (728)
....... .........++++++|+|||||||.||||+++|+++.+.+.+....++++++|++++..|+.|..++. .+
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 842 (1146)
T PRK08633 763 ARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTL 842 (1146)
T ss_pred hccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHH
Confidence 1000000 00001345679999999999999999999999999999988888888999999999999999999985 48
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhcc
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 495 (728)
+.+++.|+++++.+...++..+++.++++++|++.++|++++.+.+.......+++++|.+++|||++++++.+++.+.+
T Consensus 843 ~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~ 922 (1146)
T PRK08633 843 WLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF 922 (1146)
T ss_pred HHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh
Confidence 89999999999987666788999999999999999999999999886555566789999999999999999999998877
Q ss_pred CCCCeEecccccccccccccCCccc---------ccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEeccccCC
Q 004825 496 LYKPVIEYCGGTEIGGGFITGSLLQ---------AQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGA 565 (728)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~---------~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~ 565 (728)
+ ++++|.||+||++..++...+.. .....++|+|++|++++|+|+ +++++|+|+. |||++++..+..
T Consensus 923 g-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--Gel~v~g~~~~~ 999 (1146)
T PRK08633 923 G-IRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGED--GLILIGGPQVMK 999 (1146)
T ss_pred C-CCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCc--eEEEEcCCCccc
Confidence 4 89999999999986554332211 124578999999999999995 5899999987 999997665443
Q ss_pred CccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCC--CeeeeEE
Q 004825 566 SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVLETAA 643 (728)
Q Consensus 566 ~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p--~V~~~~V 643 (728)
.|+++++.+++.|.+. +|.+||+|||+|++++||+++++||.||+||++|++|+|.|||++|. +|| .+.+++|
T Consensus 1000 -gY~~~~~~t~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~~~~~~~~v 1074 (1146)
T PRK08633 1000 -GYLGDPEKTAEVIKDI---DGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELA-KALGGEEVVFAV 1074 (1146)
T ss_pred -cccCCccchHHHhhcC---CCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHH-hccCCCCceEEE
Confidence 2466777888777643 35569999999999999999999999999999999999999999995 898 5678999
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHH-hhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 644 IGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQ-KKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~-~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
++.+++..| +.++++++... .+.+++++ +++ +.+|.|++|..++++++||+|+|||+||++|+++.+++
T Consensus 1075 ~~~~~~~~g-~~~~~~v~~~~-----~~~~~l~~----~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1075 TAVPDEKKG-EKLVVLHTCGA-----EDVEELKR----AIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred EeccCCCCC-cEEEEEEecCc-----cCHHHHHH----HHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence 999998887 88999888632 34555555 454 46999999999999999999999999999999998775
Q ss_pred c
Q 004825 723 D 723 (728)
Q Consensus 723 ~ 723 (728)
.
T Consensus 1145 ~ 1145 (1146)
T PRK08633 1145 L 1145 (1146)
T ss_pred c
Confidence 3
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-63 Score=560.92 Aligned_cols=506 Identities=20% Similarity=0.205 Sum_probs=397.9
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++|+++|+.+.+. .+||.||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 5 l~~~~~~~a~~~p~~~a~~~~~~--------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~ 76 (533)
T PRK07798 5 IADLFEAVADAVPDRVALVCGDR--------RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKA 76 (533)
T ss_pred HHHHHHHHHHhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 34678889999999999999776 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC--cEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
|++++|+++.++.+++.++++++++++++++....... .++...... .++.+..... .....+...+.++
T Consensus 77 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 148 (533)
T PRK07798 77 RAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRV-----AEVLPRLPKLRTLVVVEDGSG---NDLLPGAVDYEDA 148 (533)
T ss_pred CeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHH-----HHHhccCCCccEEEEecCCcc---cccCCccccHHHH
Confidence 99999999999999999999999999999987432110 011111111 1222222111 0111134466666
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh---------cCC------CCCCEEE
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---------MDI------RKADIVA 401 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~---------~~~------~~~d~~l 401 (728)
...... ...... ..++.++|+|||||||.||||+++|+++...+...... ..+ ..+++++
T Consensus 149 ~~~~~~----~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (533)
T PRK07798 149 LAAGSP----ERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRF 223 (533)
T ss_pred HhccCC----cCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEE
Confidence 543221 111112 23455799999999999999999999987654432211 112 5678999
Q ss_pred ecCCcchhhhHHHHHHHhhhCcEEEEeCC-CCCcchHHHHHHHhCCcEEEecHHHHHH-HHcCCC-CCCCCCcCeeEEEe
Q 004825 402 WPTNLGWMMGPWLVYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRT-WKSTNC-IDGYDWSSIRCFGS 478 (728)
Q Consensus 402 ~~~~~~~~~~~~~~~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~Ps~l~~-l~~~~~-~~~~~l~~lr~i~~ 478 (728)
...|+.|+.+++.++.+|+.|+++++.+. ..++..+++.|+++++|++.++|..+.. +..... ....+++++|.+++
T Consensus 224 ~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~ 303 (533)
T PRK07798 224 PAPPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIAS 303 (533)
T ss_pred EecchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999873 3567889999999999999999865533 333221 23456789999999
Q ss_pred ecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCccccccccccc--CCCCCceEEEEcCCCCccCCCCCceeEE
Q 004825 479 TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFS--TPAMGCKLFILGNDGCPIPQNVPGMGEL 556 (728)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG--~p~~~~~v~i~d~~g~~vp~g~~giGEl 556 (728)
||+++++++.+++.+.+++..+++.||+||++.+....... ...+.| ++.++..++|+|++|++++.|..+.|++
T Consensus 304 gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~---~~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l 380 (533)
T PRK07798 304 GGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK---GAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWI 380 (533)
T ss_pred CCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC---CCccCCCCccCCCceEEEECCCCCCCCCCCCCeeEE
Confidence 99999999999998888778999999999987544332221 112334 7889999999999999999998656888
Q ss_pred EEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCC
Q 004825 557 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 636 (728)
Q Consensus 557 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p 636 (728)
+.++...- .|+++++.++..|... +|.+||+|||+|++++||+++++||.|++||++|++|+|.|||++|. .+|
T Consensus 381 ~~~~~~~~--gy~~~~~~t~~~f~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~ 454 (533)
T PRK07798 381 ARRGHIPL--GYYKDPEKTAETFPTI---DGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALK-AHP 454 (533)
T ss_pred EeecCccc--cccCChhhhHHhhccC---CCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHH-hCc
Confidence 77664332 3566777787777652 36679999999999999999999999999999999999999999995 899
Q ss_pred CeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHH
Q 004825 637 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716 (728)
Q Consensus 637 ~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 716 (728)
.|.+++|++.+++..+ +.+++++++.+ +. ..+.+++++ +++++|+.|++|..++++++||+|++||++|+.|+
T Consensus 455 ~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~~-~~~~~~l~~----~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~ 527 (533)
T PRK07798 455 DVADALVVGVPDERWG-QEVVAVVQLRE-GA-RPDLAELRA----HCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAK 527 (533)
T ss_pred cceeEEEEeccCcccC-ceEEEEEEECC-CC-CCCHHHHHH----HHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHh
Confidence 9999999998877666 78889988876 43 345554444 67788999999999999999999999999999999
Q ss_pred HHHHh
Q 004825 717 KQLAQ 721 (728)
Q Consensus 717 ~~~~~ 721 (728)
++.++
T Consensus 528 ~~~~~ 532 (533)
T PRK07798 528 EQAAE 532 (533)
T ss_pred hhhcc
Confidence 99865
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-63 Score=558.13 Aligned_cols=500 Identities=23% Similarity=0.295 Sum_probs=406.7
Q ss_pred chHhhhhcccc-cCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Q 004825 176 VNPAKNCLSVN-SKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLA 254 (728)
Q Consensus 176 ~~~~~~~l~~~-~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA 254 (728)
.|.++++++++ ++.+||++|++.... .+||.||.++++++|++|.+.|+++|++|+++++|+++++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a 74 (508)
T TIGR02262 3 YNAAEDLLDRNVVEGRGGKTAFIDDIS--------SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLG 74 (508)
T ss_pred chHHHHHHHHHHhcccCCceEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 57888988887 577999999998766 999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcccccCCCCc
Q 004825 255 IVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFSMKLRDGDI 331 (728)
Q Consensus 255 ~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~ 331 (728)
|+++|++++|+++.++.+++.++++.++++++++++.... .. +.....+. ..+.+... .....
T Consensus 75 ~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 140 (508)
T TIGR02262 75 AIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLP------VIKAALGKSPHLEHRVVVGRP--------EAGEV 140 (508)
T ss_pred HHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHH------HHHHHHhcCCCccEEEEeCCC--------Ccccc
Confidence 9999999999999999999999999999999999875321 11 11111111 12222111 01122
Q ss_pred CHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHH-HHHhcCCCCCCEEEecCCcchhh
Q 004825 332 SWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD-AWCHMDIRKADIVAWPTNLGWMM 410 (728)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~~~~ 410 (728)
.+.++..... ....+....++++++++|||||||.||||+++|+++...+.. ....++++++|+++...|++|+.
T Consensus 141 ~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 216 (508)
T TIGR02262 141 QLAELLATES----EQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAY 216 (508)
T ss_pred cHHHHhhcCC----CccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHH
Confidence 3333332211 111223445789999999999999999999999999877655 34567899999999999999999
Q ss_pred hH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHH
Q 004825 411 GP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYL 489 (728)
Q Consensus 411 ~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~ 489 (728)
++ ..++.++..|+++++.++..++..+++.|+++++|++.++|+++..+++.........+++|.+++||+++++++.+
T Consensus 217 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~ 296 (508)
T TIGR02262 217 GLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQ 296 (508)
T ss_pred HHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHH
Confidence 88 56778999999999988766788999999999999999999999988765443334567899999999999999998
Q ss_pred HHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccc
Q 004825 490 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 569 (728)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~ 569 (728)
.|.+.++ +++++.||+||++........ ......++|+|++|+.++|+|++++++|.|+. |||++.+.....+ |+
T Consensus 297 ~~~~~~~-~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~--Gel~i~~~~~~~g-Y~ 371 (508)
T TIGR02262 297 RWQARFG-VDIVDGIGSTEMLHIFLSNLP-GDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEP--GELLISGPSSATM-YW 371 (508)
T ss_pred HHHHHhC-CchhhCccccccCceeecCCc-cCCCCCCcCCCCCCcEEEEECCCCCCCCCCCe--eEEEEecCccccc-cC
Confidence 8888774 799999999999865443322 22345689999999999999999999999986 9999976554332 45
Q ss_pred cCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCC
Q 004825 570 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 649 (728)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~ 649 (728)
++++.++..|.. +||+|||++++++||.++++||.||+||++|.+|+|.+||++|. .+|+|.++++++.++.
T Consensus 372 ~~~~~~~~~~~~-------~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~-~~~~v~~~~~~~~~~~ 443 (508)
T TIGR02262 372 NNRAKTRDTFQG-------EWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALI-QHPAVLEAAVVGVEDE 443 (508)
T ss_pred CCHHHhHhhhhc-------CceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHH-hCCCeeEEEEEecccc
Confidence 666777666632 39999999999999999999999999999999999999999995 8999999999998776
Q ss_pred CCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHH
Q 004825 650 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 718 (728)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 718 (728)
..+ +.+++|++..+ +. ...+.+.+.++++++++|+++++|..++.+++||+|++||++|++|+++
T Consensus 444 ~~~-~~~~~~v~~~~-~~--~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 444 DGL-IKPKAFIVLRP-GQ--DIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLREG 508 (508)
T ss_pred CCC-ceeEEEEEeCC-CC--ccccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence 665 78889998776 33 1223455677778999999999999999999999999999999998753
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-63 Score=557.43 Aligned_cols=485 Identities=22% Similarity=0.173 Sum_probs=387.4
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...+|++++. ++++|+++.+. ++||+||.++++++|++|+++ |++++++|+|+++|++++++++|||++
T Consensus 7 ~~~~l~~~a~--~~~~a~~~~~~--------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~ 76 (529)
T PRK07867 7 VAELLLPLAE--DDDRGLYFEDS--------FTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAAL 76 (529)
T ss_pred HHHHHHHhcc--cCCceEEECCc--------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 3355666653 78999998776 999999999999999999997 899999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
+|++++|+++.++.+++.+++++++++++|+++.... .++.......++... ...+.+.+
T Consensus 77 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~---------~~~~~~~~~~~~~~~-----------~~~~~~~l 136 (529)
T PRK07867 77 SGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAE---------LLDGLDPGVRVINVD-----------SPAWADEL 136 (529)
T ss_pred cCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHH---------HHHhhccCceEEEec-----------cccHHHHh
Confidence 9999999999999999999999999999999875431 111111111112111 11233333
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH-HHH
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LVY 416 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~ 416 (728)
..... .........++++++|+|||||||.||||+++|+++..........++++.+|+++...|++|..+++ .++
T Consensus 137 ~~~~~---~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~ 213 (529)
T PRK07867 137 AAHRD---AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWA 213 (529)
T ss_pred cccCC---CCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHH
Confidence 22111 11122345678999999999999999999999999998888888888999999999999999999984 567
Q ss_pred HHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 417 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 417 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
.++..|+++++.+. .++..+++.++++++|++.++|+.+..++..........+++|. ++||+.+++.. .++.+.+
T Consensus 214 ~~l~~G~~~~~~~~-~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~- 289 (529)
T PRK07867 214 VALAAGASIALRRK-FSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRF- 289 (529)
T ss_pred HHHhcCceEEecCC-CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHh-
Confidence 78999999988753 56788999999999999999999999988764332233457884 56888887664 5566666
Q ss_pred CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCC------------CceeEEEE-eccc
Q 004825 497 YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNV------------PGMGELAL-SPLI 562 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~------------~giGEl~v-~~~~ 562 (728)
++++++.||+||+++...... .....++|.|+++ ++|+| +++++++.|+ . |||++ .+..
T Consensus 290 g~~l~~~YG~TE~~~~~~~~~---~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~--Gel~i~~g~~ 362 (529)
T PRK07867 290 GCVVVDGFGSTEGGVAITRTP---DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAI--GELVNTAGPG 362 (529)
T ss_pred CCcEEEeecccccccccccCC---CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcc--eEEEEecCCc
Confidence 489999999999986543221 1234679999999 67887 4688898887 5 99998 6544
Q ss_pred cCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeE
Q 004825 563 FGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETA 642 (728)
Q Consensus 563 ~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~ 642 (728)
+.. .|+++++.+.+.|. +| ||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+|+
T Consensus 363 ~~~-gy~~~~~~~~~~~~-----~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~~~ 433 (529)
T PRK07867 363 GFE-GYYNDPEADAERMR-----GG--VYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILL-RYPDATEVA 433 (529)
T ss_pred ccc-cccCChHhhhhhhc-----CC--eEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHH-hCCCeeEEE
Confidence 332 24566677776663 23 9999999999999999999999999999999999999999996 899999999
Q ss_pred EEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 643 AIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 643 Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
|++++++..| ++++++++..+ +. ..+.+++++.+++ +..|++|++|..|+++++||+|++||++|+.|+++...
T Consensus 434 V~g~~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~~~~~--~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 434 VYAVPDPVVG-DQVMAALVLAP-GA-KFDPDAFAEFLAA--QPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVD 507 (529)
T ss_pred EEeccCCCCC-eeEEEEEEECC-CC-CCCHHHHHHHHHh--hccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCC
Confidence 9999988877 88999999876 54 4666777665433 23599999999999999999999999999999998754
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-63 Score=561.73 Aligned_cols=507 Identities=21% Similarity=0.228 Sum_probs=398.1
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
+...++|.++++++|+++|+++.+. .+||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+
T Consensus 23 ~~i~~~l~~~a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~ 94 (557)
T PRK07059 23 PSLADLLEESFRQYADRPAFICMGK--------AITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVL 94 (557)
T ss_pred CCHHHHHHHHHHHcCCCceEEEcCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 3455778888899999999999776 99999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC-cEEEEcCCCCCc-------------
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP-LAIVIPAKGSSF------------- 322 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~------------- 322 (728)
++|++++|++|.++.+++.+++++++++++|+++......+ ........ .+++........
T Consensus 95 ~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (557)
T PRK07059 95 RAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQ-----QVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRV 169 (557)
T ss_pred hcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHH-----HhhcccCCceeEEecccccccccccccccccccc
Confidence 99999999999999999999999999999999875321000 11111111 111111100000
Q ss_pred ----ccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh----cCC
Q 004825 323 ----SMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH----MDI 394 (728)
Q Consensus 323 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~----~~~ 394 (728)
......+...+.++...... .........++++|+|+|||||||.||||+++|++++..+...... +..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~ 246 (557)
T PRK07059 170 KKMVPAWSLPGHVRFNDALAEGAR---QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEK 246 (557)
T ss_pred cccccccCCCCcccHHHHhhccCC---CCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccc
Confidence 00001223345444433211 1122344567899999999999999999999999987665433221 111
Q ss_pred C---CCCEEEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCC
Q 004825 395 R---KADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDW 470 (728)
Q Consensus 395 ~---~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l 470 (728)
. ..+.++...|++|.++. ...+.++..|++.++.+...++..+++.++++++|.+..+|+++..+.........++
T Consensus 247 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~ 326 (557)
T PRK07059 247 KPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDF 326 (557)
T ss_pred cCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCc
Confidence 1 23467788999998876 4667888999998887755577789999999999999999999999988765555667
Q ss_pred cCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCC
Q 004825 471 SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNV 550 (728)
Q Consensus 471 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~ 550 (728)
+++|.++.||+++++.+.+++.+.+ ++++++.||+||++..++...........++|+|++|++++|+|++|+++|.|+
T Consensus 327 ~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~ 405 (557)
T PRK07059 327 SKLIVANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGE 405 (557)
T ss_pred hhheEEEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCC
Confidence 8999999999999999988888766 489999999999987655443322234578999999999999999999999998
Q ss_pred CceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHH
Q 004825 551 PGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERI 630 (728)
Q Consensus 551 ~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~ 630 (728)
. |||++.+..... .|+++++.+.+.|..+ | ||+|||+|++++||.++++||+|++||++|++|+|.|||++
T Consensus 406 ~--Gel~v~g~~~~~-gY~~~~~~~~~~~~~~----g--~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~ 476 (557)
T PRK07059 406 P--GEICIRGPQVMA-GYWNRPDETAKVMTAD----G--FFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEV 476 (557)
T ss_pred c--eEEEEeCCccch-hhhcCHHHHhhhcccC----C--ceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHH
Confidence 7 999997654432 2455667777666532 3 99999999999999999999999999999999999999999
Q ss_pred HhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCch
Q 004825 631 CNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKV 710 (728)
Q Consensus 631 l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKv 710 (728)
|. .+|+|.+++|++.+++..| +.++++++... . ..+.++ ++++++++|+.|++|..+++++++|+|++||+
T Consensus 477 l~-~~~~V~~~~v~~~~~~~~g-e~~~~~v~~~~-~--~~~~~~----l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~ 547 (557)
T PRK07059 477 VA-SHPGVLEVAAVGVPDEHSG-EAVKLFVVKKD-P--ALTEED----VKAFCKERLTNYKRPKFVEFRTELPKTNVGKI 547 (557)
T ss_pred HH-hCCceeEEEEEecccCCCC-eeEEEEEEeCC-C--CCCHHH----HHHHHHHhcccccCCcEEEEeccCCCCcccce
Confidence 95 8999999999999887777 78999888654 2 234444 44568889999999999999999999999999
Q ss_pred hHHHHHHH
Q 004825 711 MRRVLRKQ 718 (728)
Q Consensus 711 dR~~L~~~ 718 (728)
+|+.|+++
T Consensus 548 ~r~~L~~~ 555 (557)
T PRK07059 548 LRRELRDG 555 (557)
T ss_pred eHHHHHhh
Confidence 99999865
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=558.97 Aligned_cols=514 Identities=19% Similarity=0.177 Sum_probs=399.6
Q ss_pred CCCCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Q 004825 168 GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (728)
Q Consensus 168 ~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (728)
..|..........++|.++++++|+++|+++.+. ++||.||+++++++|++|.+.|+++|++|+|+++|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~ 83 (541)
T TIGR03205 12 VRWDATIARGTLPDLLSKAAADYGPRPALEFRDR--------PITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPD 83 (541)
T ss_pred CCcccCCCCCCHHHHHHHHHHHcCCCceEEECCc--------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChH
Confidence 4565444444566788888899999999998776 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhh-cCCcEEEEcCCCCCc---
Q 004825 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDA-QAPLAIVIPAKGSSF--- 322 (728)
Q Consensus 248 ~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~~--- 322 (728)
+++++|||+++|++++|++|.++.+++.+++++++++.+++++... ..... +.... .....+++.......
T Consensus 84 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (541)
T TIGR03205 84 HPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAA----LLPMALKFLEKGLLDRLIVCEDDNWGKVGT 159 (541)
T ss_pred HHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchh----hhHHHHHhhhcccceEEEEecccccccccc
Confidence 9999999999999999999999999999999999999999976310 01100 11111 111222222211000
Q ss_pred ---ccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHH-----hcCC
Q 004825 323 ---SMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC-----HMDI 394 (728)
Q Consensus 323 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~-----~~~~ 394 (728)
..........+.++...... ........++++++++|||||||.||||+++|+++......... ....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~ 235 (541)
T TIGR03205 160 PQAPIPADPRIVTYADFVKGAAA----PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATR 235 (541)
T ss_pred cccccCCCcccccHHHHHhcCCC----CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccC
Confidence 00011123445555432211 11122356789999999999999999999999998765543211 1122
Q ss_pred CCCCEEEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCe
Q 004825 395 RKADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 473 (728)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~l 473 (728)
...+++++..|++|..+. ..++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|++........++++
T Consensus 236 ~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l 314 (541)
T TIGR03205 236 GDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQ-RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSL 314 (541)
T ss_pred CCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCcccc
Confidence 345789999999998887 45788999999988875 3578899999999999999999999999987544444567899
Q ss_pred eEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEE--cCCCCccCCCCC
Q 004825 474 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFIL--GNDGCPIPQNVP 551 (728)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~--d~~g~~vp~g~~ 551 (728)
|.+++||+++++++.+++.+.+ +.++++.||+||++..++...........++|.|++++.++|+ |+++++++.|+.
T Consensus 315 ~~i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~ 393 (541)
T TIGR03205 315 ATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEV 393 (541)
T ss_pred ceEEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCe
Confidence 9999999999999988887765 4889999999999876554433333345689999999998875 677899999986
Q ss_pred ceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHH
Q 004825 552 GMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 631 (728)
Q Consensus 552 giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l 631 (728)
|||++++..+..+ |+++++.+++.|.. + ||+|||++++++||+++++||.||+||++|++|+|.|||+++
T Consensus 394 --Gel~v~~~~~~~g-y~~~~~~~~~~~~~-----~--~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l 463 (541)
T TIGR03205 394 --GELRIRGPNVTRG-YWNRPEESAEAFVG-----D--RFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAI 463 (541)
T ss_pred --eEEEEecCCcccc-ccCChhhhHhhhcc-----C--CcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHH
Confidence 9999976544332 45566777777742 2 899999999999999999999999999999999999999999
Q ss_pred hcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchh
Q 004825 632 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 711 (728)
Q Consensus 632 ~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvd 711 (728)
. .|++|.+++|++++++..+ +.+++++++.. +....+..+ ++++++++|++|++|..++++++||+|++||++
T Consensus 464 ~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~----l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~ 536 (541)
T TIGR03205 464 Y-EHPGVQEVIVIGIPDQYRG-EAAKAFVKLRP-GAKPFSLDE----LRAFLAGKLGKHELPVAVEFVDELPRTPVGKLS 536 (541)
T ss_pred H-hCCCeeeEEEEecCCcccC-ceEEEEEEECC-CCCcCCHHH----HHHHHHhhcccccCCcEEEEeccCCCCccccee
Confidence 6 8999999999999887666 78999998876 431234444 455688899999999999999999999999999
Q ss_pred HHHHH
Q 004825 712 RRVLR 716 (728)
Q Consensus 712 R~~L~ 716 (728)
|++|+
T Consensus 537 r~~l~ 541 (541)
T TIGR03205 537 RHELR 541 (541)
T ss_pred HhhcC
Confidence 99874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=556.10 Aligned_cols=496 Identities=19% Similarity=0.203 Sum_probs=402.9
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++|+++|+++.+. .+||.||.++++++|+.|.+.|+++|++|++++++++++++++|||+++
T Consensus 14 ~~~~~~~~~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~ 85 (524)
T PRK06188 14 YGHLLVSALKRYPDRPALVLGDT--------RLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLA 85 (524)
T ss_pred HHHHHHHHHHHCCCCeEEEECCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 44667788889999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC--CcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
|++++|++|..+.+++..++++++++.+++++... .... ....... ...+.+.... ...+
T Consensus 86 G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 148 (524)
T PRK06188 86 GLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPF-----VERALALLARVPSLKHVLTLGPVP------------DGVD 148 (524)
T ss_pred CCEEEecccCCCHHHHHHHHHhcCceEEEEecchh-----hHHHHHHhhhcCCceEEEEeCCcc------------chhh
Confidence 99999999999999999999999999999987521 0000 1111111 1112111110 0111
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 415 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 415 (728)
+............ .....++++++|+|||||||.||+|+++|+++.+.+......+++..+|++++..|++|..++. +
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~ 226 (524)
T PRK06188 149 LLAAAAKFGPAPL-VAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-F 226 (524)
T ss_pred HHHhhhccCcccc-cccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-H
Confidence 1111111011111 1122456799999999999999999999999999988888889999999999999999988764 6
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhcc
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 495 (728)
+.++..|+++++.+. .++..+++.++++++|++.++|+++..+++.......+++++|.+++||++++++....+.+.+
T Consensus 227 ~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~ 305 (524)
T PRK06188 227 LPTLLRGGTVIVLAK-FDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF 305 (524)
T ss_pred HHHHHcCCEEEEcCC-CCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh
Confidence 788999999999875 5678999999999999999999999999987665666789999999999999999888877766
Q ss_pred CCCCeEecccccccccccccCCcc-----cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCcccc
Q 004825 496 LYKPVIEYCGGTEIGGGFITGSLL-----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 570 (728)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~-----~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~ 570 (728)
+ ..+++.||+||++..++..... ......++|+|++|+.++|+|+++++++.|+. |||+|.+..... .|++
T Consensus 306 ~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~--Gel~v~~~~~~~-gy~~ 381 (524)
T PRK06188 306 G-PIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEV--GEICVRGPLVMD-GYWN 381 (524)
T ss_pred C-chhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCe--eEEEEECcchhh-hhcC
Confidence 5 6799999999997654433221 12345689999999999999999999999986 999997665443 2355
Q ss_pred CccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCC
Q 004825 571 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 650 (728)
Q Consensus 571 ~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~ 650 (728)
+++.+...|. +| ||+|||+|++++||.++++||.|++||++|++|+|.+||++|. .||+|.+++|++.+++.
T Consensus 382 ~~~~~~~~~~-----~g--~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~ 453 (524)
T PRK06188 382 RPEETAEAFR-----DG--WLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLA-EHPAVAQVAVIGVPDEK 453 (524)
T ss_pred ChHHhhhhhc-----CC--ceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHH-hCCCeeEEEEEeccCCC
Confidence 6666665553 23 9999999999999999999999999999999999999999995 99999999999988877
Q ss_pred CCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 651 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
.+ +.+++++++.+ +. ..+.. .|++++++.++.|++|..|+++++||+|++||++|++|++++.+
T Consensus 454 ~~-~~~~~~v~~~~-~~-~~~~~----~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~ 517 (524)
T PRK06188 454 WG-EAVTAVVVLRP-GA-AVDAA----ELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWE 517 (524)
T ss_pred cC-ceEEEEEEECC-CC-CCCHH----HHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHh
Confidence 66 88999999876 33 23434 45556888899999999999999999999999999999999854
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=557.82 Aligned_cols=509 Identities=19% Similarity=0.186 Sum_probs=397.9
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+.|.++++++|+++|++..+. ++||+||.++++++|+.|.+.|+++||+|+|+++|+.++++++|||+++
T Consensus 12 l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~ 83 (540)
T PRK06164 12 LASLLDAHARARPDAVALIDEDR--------PLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARL 83 (540)
T ss_pred HHHHHHHHHHhCCCCeEEecCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 45667888899999999996655 8999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhc-------CCcEEEEcCCCCCcccccCCCCc
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQ-------APLAIVIPAKGSSFSMKLRDGDI 331 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~ 331 (728)
|++++|+++..+.+++.+++++++++++|++++... +.....+... ...++++........ .....
T Consensus 84 G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 156 (540)
T PRK06164 84 GATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKG----IDFAAILAAVPPDALPPLRAIAVVDDAADATP---APAPG 156 (540)
T ss_pred CcEEEecCCCCCcHHHHHHHHhcCccEEEEcccccc----ccHHHHhhcccccccCCcceEEEeccCcccCC---CCCcc
Confidence 999999999999999999999999999999875421 1111111110 012222221110000 00000
Q ss_pred CHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhh
Q 004825 332 SWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMG 411 (728)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 411 (728)
.+.++..................++++++++|||||||.||||+++|+++.+.+......+++..+++++++.|++|.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 236 (540)
T PRK06164 157 ARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFG 236 (540)
T ss_pred cccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHH
Confidence 11111110000000000112335689999999999999999999999999998888888899999999999999999999
Q ss_pred HHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeec-CCCCHHHHHH
Q 004825 412 PWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG-EASNVDEYLW 490 (728)
Q Consensus 412 ~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gG-e~l~~~~~~~ 490 (728)
+..++.++..|+++++.+. .++..+++.|+++++|+++++|+++..|.+.. ....++++++.+.++| .+...+..++
T Consensus 237 ~~~~~~~l~~G~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~ 314 (540)
T PRK06164 237 FSTLLGALAGGAPLVCEPV-FDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAAL 314 (540)
T ss_pred HHHHHHHHhcCceEEecCC-CCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHH
Confidence 9889999999999998753 56788999999999999999999999998762 3445688999887776 4455556666
Q ss_pred HHhccCCCCeEecccccccccccccCCccc--ccccccccCCC-CCceEEEEcC-CCCccCCCCCceeEEEEeccccCCC
Q 004825 491 LMGRALYKPVIEYCGGTEIGGGFITGSLLQ--AQSLAAFSTPA-MGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGAS 566 (728)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~-~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~ 566 (728)
+... ++++++.||+||++..++...... .....+.|.|+ +++.++|+|+ ++++++.|+. |||+|.+..+..
T Consensus 315 ~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~- 389 (540)
T PRK06164 315 ARAR--GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGES--GEIEIRAPSLMR- 389 (540)
T ss_pred Hhhc--CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCe--eEEEEecccccc-
Confidence 6544 588999999999987655443321 12234567775 7999999994 6899999986 999997665543
Q ss_pred ccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEee
Q 004825 567 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 646 (728)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~ 646 (728)
.|+++++.|+..|..+ | ||+|||+|++++||.+++.||.|++||++|++|+|.|||++|. .||+|.+++|++.
T Consensus 390 gY~~~~~~t~~~~~~~----~--~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~-~~~~v~~~~v~~~ 462 (540)
T PRK06164 390 GYLDNPDATARALTDD----G--YFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALE-ALPGVAAAQVVGA 462 (540)
T ss_pred cccCCchhhhhcccCC----C--ceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHH-hCCCceeEEEEec
Confidence 3467788888777643 2 9999999999999999999999999999999999999999995 8999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCC---chhHHHHHHHHHhhc
Q 004825 647 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATN---KVMRRVLRKQLAQLD 723 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~G---KvdR~~L~~~~~~~~ 723 (728)
+. .++ ..+++++++.+ +. ..+.++ +.++++++||+|++|..|++++.+|+|++| |++|+.|+++++++.
T Consensus 463 ~~-~~~-~~~~~~vv~~~-~~-~~~~~~----l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~ 534 (540)
T PRK06164 463 TR-DGK-TVPVAFVIPTD-GA-SPDEAG----LMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARL 534 (540)
T ss_pred CC-CCc-eeEEEEEEeCC-CC-CCCHHH----HHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhh
Confidence 74 333 78999999876 43 344444 445688899999999999999999999999 999999999988754
Q ss_pred c
Q 004825 724 Q 724 (728)
Q Consensus 724 ~ 724 (728)
+
T Consensus 535 ~ 535 (540)
T PRK06164 535 A 535 (540)
T ss_pred h
Confidence 3
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=560.91 Aligned_cols=506 Identities=19% Similarity=0.208 Sum_probs=397.4
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN-ALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
..+.|.++++++|+++|+++.++ ++||+||.++++++|+.|. +.|+++|++|+++++|++++++++|||++
T Consensus 27 ~~~~l~~~~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 98 (560)
T PRK08751 27 VAEVFATSVAKFADRPAYHSFGK--------TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLR 98 (560)
T ss_pred HHHHHHHHHHhCCCCceEEECCc--------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 45667888889999999998776 9999999999999999997 68999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCC-----------------
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGS----------------- 320 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------------- 320 (728)
+|++++|++|.++.+++.+++++++++++++++..... + ...........+++.....
T Consensus 99 ~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (560)
T PRK08751 99 AGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTT---V--QQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYV 173 (560)
T ss_pred hCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHH---H--HHHhhCCCccEEEEechhhhcccccchhhhhhhhhh
Confidence 99999999999999999999999999999998753210 0 0111111111111110000
Q ss_pred --CcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcC----C
Q 004825 321 --SFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD----I 394 (728)
Q Consensus 321 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~----~ 394 (728)
........+...+.+....... .........++++++++|||||||.||||+++|+++...+.+....++ +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~ 250 (560)
T PRK08751 174 KKLVPEYRINGAIRFREALALGRK---HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKL 250 (560)
T ss_pred hccccccCCCccccHHHHHhccCC---CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccccc
Confidence 0000001122334443332211 111223456789999999999999999999999999887776655443 3
Q ss_pred CCC-CEEEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcC
Q 004825 395 RKA-DIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSS 472 (728)
Q Consensus 395 ~~~-d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~ 472 (728)
..+ ++++...++.|..++ ...+.++..|+++++.....++..+++.|+++++|++..+|+++..+.+.......++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~ 330 (560)
T PRK08751 251 EEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSS 330 (560)
T ss_pred CCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhh
Confidence 344 567778899988887 346677888998888766567788999999999999999999999998876555567889
Q ss_pred eeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCc
Q 004825 473 IRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPG 552 (728)
Q Consensus 473 lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~g 552 (728)
+|.+++||+++++.+.+.+.+.+ ++++++.||+||++..++..........+++|.|++++.++|+|++|++++.|+.
T Consensus 331 lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~- 408 (560)
T PRK08751 331 LKMTLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEI- 408 (560)
T ss_pred heeeeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCCc-
Confidence 99999999999999988888765 4789999999999875544332223345789999999999999999999999986
Q ss_pred eeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHh
Q 004825 553 MGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN 632 (728)
Q Consensus 553 iGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~ 632 (728)
|||+|.+..+.. .|+++++.++++|..+ | ||+|||+|++++||.++++||.||+||++|++|+|.|||++|.
T Consensus 409 -Gel~v~~~~~~~-gy~~~~~~~~~~~~~~----g--~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~ 480 (560)
T PRK08751 409 -GELCIKGPQVMK-GYWKRPEETAKVMDAD----G--WLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA 480 (560)
T ss_pred -eEEEEecCccch-hhcCChhhhhhccccC----C--CccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHH
Confidence 999996655433 2456777777777432 3 9999999999999999999999999999999999999999995
Q ss_pred cCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhH
Q 004825 633 AVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMR 712 (728)
Q Consensus 633 ~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR 712 (728)
.+|+|.+|+|++++++..| +.++++++... . ..+.++++ ++++++|++|++|..++++++||+|++||++|
T Consensus 481 -~~~~v~~~~v~~~~~~~~g-e~~~~~v~~~~-~--~~~~~~l~----~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r 551 (560)
T PRK08751 481 -MMPGVLEVAAVGVPDEKSG-EIVKVVIVKKD-P--ALTAEDVK----AHARANLTGYKQPRIIEFRKELPKTNVGKILR 551 (560)
T ss_pred -hCcCeeeeEEEecCCCCCC-ceEEEEEEcCC-C--CCCHHHHH----HHHHHhhhhccCCeEEEEhhhCCCCccccccH
Confidence 9999999999999887776 67777776543 2 23444444 46778899999999999999999999999999
Q ss_pred HHHHHHH
Q 004825 713 RVLRKQL 719 (728)
Q Consensus 713 ~~L~~~~ 719 (728)
++|++..
T Consensus 552 ~~L~~~~ 558 (560)
T PRK08751 552 RELRDAA 558 (560)
T ss_pred HHHHHhh
Confidence 9998763
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=559.99 Aligned_cols=510 Identities=20% Similarity=0.242 Sum_probs=396.0
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++|+++|+++.+. .+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus 25 ~~~~~~~~~a~~~p~~~a~~~~~~--------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 96 (563)
T PRK06710 25 PLHKYVEQMASRYPEKKALHFLGK--------DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLL 96 (563)
T ss_pred cHHHHHHHHHHHCCCceEEEecCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 345667778889999999999776 899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcc--------------
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFS-------------- 323 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------- 323 (728)
+|++++|++|.++.+++.++++.++++++++++......... ........+++........
T Consensus 97 ~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (563)
T PRK06710 97 AGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNV-----QSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQ 171 (563)
T ss_pred cCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhcc-----chhhccceeEEeccccccccccccccchhhccc
Confidence 999999999999999999999999999999987543211111 0000001111110000000
Q ss_pred --ccc-CCC---CcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHH-hcCCCC
Q 004825 324 --MKL-RDG---DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC-HMDIRK 396 (728)
Q Consensus 324 --~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~ 396 (728)
... .+. ...|.++.... ..........+++++|++|||||||.||||+++|+++......... .++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 247 (563)
T PRK06710 172 SNLVVKVSESETIHLWNSVEKEV----NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKE 247 (563)
T ss_pred ccccccccccchhhhhhhhhhcc----ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCC
Confidence 000 000 00111111100 0011111223578999999999999999999999998755433322 234444
Q ss_pred -CCEEEecCCcchhhhHH-HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCee
Q 004825 397 -ADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 474 (728)
Q Consensus 397 -~d~~l~~~~~~~~~~~~-~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr 474 (728)
++++++..|++|..+.. .++.++..|+++++.+. .++..+++.|+++++|++.++|+++..++.........++++|
T Consensus 248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr 326 (563)
T PRK06710 248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK-FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIR 326 (563)
T ss_pred CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC-CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhh
Confidence 45788999999998874 46678999999998764 5778899999999999999999999999876555555678999
Q ss_pred EEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCce
Q 004825 475 CFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGM 553 (728)
Q Consensus 475 ~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~gi 553 (728)
.+++||+++++++.+++.+.+ +.+++|.||+||++..............+++|+|.+++.++|+| ++++++|.|+.
T Consensus 327 ~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~-- 403 (563)
T PRK06710 327 ACISGSAPLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEI-- 403 (563)
T ss_pred heeeCCCcCCHHHHHHHHHhh-CCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCCc--
Confidence 999999999999998887766 47899999999998654333222233456899999999999998 56899999986
Q ss_pred eEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhc
Q 004825 554 GELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 633 (728)
Q Consensus 554 GEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~ 633 (728)
|||++.+..+..+ |+.+++.+...|. +| ||+|||++++++||.++++||.||+||++|.+|+|.|||++|.
T Consensus 404 Gel~v~g~~~~~g-Y~~~~~~~~~~~~-----~g--~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~- 474 (563)
T PRK06710 404 GEIVVKGPQIMKG-YWNKPEETAAVLQ-----DG--WLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLY- 474 (563)
T ss_pred eEEEEecCccchh-hhCChHHHhhhcc-----cC--cccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHH-
Confidence 9999976654432 4566777776663 23 9999999999999999999999999999999999999999995
Q ss_pred CCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHH
Q 004825 634 VDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 713 (728)
Q Consensus 634 ~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~ 713 (728)
.+|.|.+++|++.+++..| +.++++++..+ +. ..+.+++ +++++++|+.|++|..++++++||+|++||++|+
T Consensus 475 ~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~-~~-~~~~~~l----~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~ 547 (563)
T PRK06710 475 EHEKVQEVVTIGVPDPYRG-ETVKAFVVLKE-GT-ECSEEEL----NQFARKYLAAYKVPKVYEFRDELPKTTVGKILRR 547 (563)
T ss_pred hCcceeeEEEEccccCCcC-ceeEEEEEECC-CC-CCCHHHH----HHHHHHhcccccCCcEEEEcccCCCCccchhhHH
Confidence 8999999999999888777 78999998876 43 3444444 4467788999999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 004825 714 VLRKQLAQLDQ 724 (728)
Q Consensus 714 ~L~~~~~~~~~ 724 (728)
+|++++..-.+
T Consensus 548 ~L~~~~~~~~~ 558 (563)
T PRK06710 548 VLIEEEKRKNE 558 (563)
T ss_pred HHHHHHhhcCc
Confidence 99998876444
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=546.41 Aligned_cols=456 Identities=21% Similarity=0.201 Sum_probs=378.0
Q ss_pred CCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 004825 188 KRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIAD 267 (728)
Q Consensus 188 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p 267 (728)
++.++++|+++.++ ++||+||.++++++|..|+ ++|+|+++++|++++++++|||+++|++++|++|
T Consensus 11 ~~~~~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~ 77 (471)
T PRK07787 11 AAADIADAVRIGGR--------VLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPP 77 (471)
T ss_pred cccCCceEEEeCCc--------EEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCC
Confidence 56899999999877 9999999999999999996 4699999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCc
Q 004825 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENE 347 (728)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (728)
..+.+++.++++++++++++++..... ..++ ...+... ...+.
T Consensus 78 ~~~~~~l~~~l~~~~~~~il~~~~~~~--~~~~---------~~~~~~~-------------~~~~~------------- 120 (471)
T PRK07787 78 DSGVAERRHILADSGAQAWLGPAPDDP--AGLP---------HVPVRLH-------------ARSWH------------- 120 (471)
T ss_pred CCChHHHHHHHHhcCCCEEEecCCccc--cccc---------ceeeecc-------------ccccc-------------
Confidence 999999999999999999999763110 0000 0000000 00000
Q ss_pred cccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEE
Q 004825 348 FAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIA 426 (728)
Q Consensus 348 ~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv 426 (728)
......++++++++|||||||.||||+++|+++...+......+++..+|++++..|+.|..++ ..++.++..|++++
T Consensus 121 -~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~ 199 (471)
T PRK07787 121 -RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFV 199 (471)
T ss_pred -cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEE
Confidence 0112356899999999999999999999999999988888788899999999999999999887 46899999999998
Q ss_pred EeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccc
Q 004825 427 LYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG 506 (728)
Q Consensus 427 l~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (728)
+.+. .++..+++.|+ +++|++..+|+++..|++... ....++++|.+++||+++++++.+++.+.+ +.++++.||+
T Consensus 200 ~~~~-~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~ 275 (471)
T PRK07787 200 HTGR-PTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-AARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGM 275 (471)
T ss_pred ecCC-CCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-ccccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCc
Confidence 8754 57789999999 999999999999999987532 234578999999999999999999888766 4789999999
Q ss_pred cccccccccCCcccccccccccCCCCCceEEEEcCCCCccCC-CCCceeEEEEeccccCCCccccCccccccccccCCCC
Q 004825 507 TEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQ-NVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSR 585 (728)
Q Consensus 507 TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~-g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~ 585 (728)
||++...+.. ........++|+|++|++++|+|+++++++. |. .+|||++.+..... .|+++++.+++.|..+
T Consensus 276 tE~~~~~~~~-~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~-~~Gei~v~g~~~~~-gy~~~~~~t~~~~~~~--- 349 (471)
T PRK07787 276 TETLITLSTR-ADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGE-TVGELQVRGPTLFD-GYLNRPDATAAAFTAD--- 349 (471)
T ss_pred cccCcceecC-CCCcccCCcccccCCCcEEEEECCCCCCCCCCCC-CceEEEEECcccch-hhcCChhhchhcccCC---
Confidence 9998643332 2223345689999999999999999999873 43 14999997665443 2456777788777643
Q ss_pred CCceeEEeCceEEEecCceEEEEccc-CCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecC
Q 004825 586 NGQILRRHGDVFERTSGGYYRAHGRA-DDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 664 (728)
Q Consensus 586 ~g~~~y~TGDl~~~~~dG~l~~~GR~-d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~ 664 (728)
| ||+|||+|++++||.++++||. |++||++|++|+|.|||++|. .+|.|.+++|++.+++..+ +.+++|++...
T Consensus 350 -~--~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~v~~~~ 424 (471)
T PRK07787 350 -G--WFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALL-GHPGVREAAVVGVPDDDLG-QRIVAYVVGAD 424 (471)
T ss_pred -C--ceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHH-hCCCcceEEEEcccccccC-eEEEEEEEeCC
Confidence 2 9999999999999999999996 899999999999999999995 8999999999999887766 89999999744
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 665 SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 665 ~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
..+..++ .++++++|++|++|..++++++||+|.+||++|++|++
T Consensus 425 ----~~~~~~l----~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 425 ----DVAADEL----IDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred ----CCCHHHH----HHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhcc
Confidence 2344544 44688889999999999999999999999999999976
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-62 Score=556.60 Aligned_cols=520 Identities=18% Similarity=0.180 Sum_probs=401.5
Q ss_pred CCCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH
Q 004825 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS 248 (728)
Q Consensus 169 ~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~ 248 (728)
.|++....+ ..+.|.++++.+|+++|+.+.+. .+||.||+++++++|++|.+.|+++|++|+|+++|++++
T Consensus 26 ~~~~~~~~~-l~~~l~~~a~~~p~~~al~~~~~--------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~ 96 (567)
T PRK06178 26 PEYPHGERP-LTEYLRAWARERPQRPAIIFYGH--------VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQF 96 (567)
T ss_pred CCCCcCccc-HHHHHHHHHHHCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHH
Confidence 355555543 44567778889999999998776 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcC-CCCCcc---c
Q 004825 249 VVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPA-KGSSFS---M 324 (728)
Q Consensus 249 vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~---~ 324 (728)
+++++||+++|++++|++|.++.+++.+++++++++++++++...... ...........+++.. .+.... .
T Consensus 97 ~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l-----~~~~~~~~~~~i~~~~~~~~~~~~~~~ 171 (567)
T PRK06178 97 HIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVV-----EQVRAETSLRHVIVTSLADVLPAEPTL 171 (567)
T ss_pred HHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHH-----HHhhccCCcceEEEecccccccccccc
Confidence 999999999999999999999999999999999999999987542110 0111111112222211 000000 0
Q ss_pred cc-------CCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHH-hcCCCC
Q 004825 325 KL-------RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC-HMDIRK 396 (728)
Q Consensus 325 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~ 396 (728)
.. ......+.++.+.... .+.........++++|+|+|||||||.||||+++|+++...+..... ...+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~ 250 (567)
T PRK06178 172 PLPDSLRAPRLAAAGAIDLLPALRA-CTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGE 250 (567)
T ss_pred ccccccccccccccccccHHHHhhc-cccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCC
Confidence 00 0001112223222211 11111223356799999999999999999999999998876554433 356788
Q ss_pred CCEEEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeE
Q 004825 397 ADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRC 475 (728)
Q Consensus 397 ~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~ 475 (728)
+|+++.+.|++|..+. ..++.+|..|+++++.++ .++..++..|+++++|.+..+|..+..+.........++++++.
T Consensus 251 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~-~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~ 329 (567)
T PRK06178 251 DSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLAR-WDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQ 329 (567)
T ss_pred CcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCC-CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchhee
Confidence 9999999999999987 568889999999999874 57889999999999999999999999988765444556778887
Q ss_pred EEe--ecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCc--cc----ccccccccCCCCCceEEEEc-CCCCcc
Q 004825 476 FGS--TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSL--LQ----AQSLAAFSTPAMGCKLFILG-NDGCPI 546 (728)
Q Consensus 476 i~~--gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--~~----~~~~~~iG~p~~~~~v~i~d-~~g~~v 546 (728)
+.. +|+.++++..+++.+.++...+.+.||+||++..++.... .. ...+.++|+|++|++++|+| ++++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~ 409 (567)
T PRK06178 330 VRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELL 409 (567)
T ss_pred eeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcC
Confidence 654 4589999999988887764444568999998765433221 11 12346799999999999999 669999
Q ss_pred CCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHH
Q 004825 547 PQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVE 626 (728)
Q Consensus 547 p~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~e 626 (728)
+.|+. |||+|.+..+.. .|+++++.++..|. +| ||+|||+|++++||+++++||+||+||++|++|+|.|
T Consensus 410 ~~g~~--Gel~v~g~~v~~-gY~~~~~~~~~~~~-----dg--~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~e 479 (567)
T PRK06178 410 PLGAE--GEIVVRTPSLLK-GYWNKPEATAEALR-----DG--WLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSE 479 (567)
T ss_pred CCCCc--eEEEEECCcccc-cccCChhhhhhccc-----CC--ceeecceEEEecCCeEEEEecccccEEECCEEECHHH
Confidence 99986 999997665443 24566666766663 24 9999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCC
Q 004825 627 IERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTA 706 (728)
Q Consensus 627 IE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~ 706 (728)
||+++. .+|+|.+++|++.+++..| +.+++++++.+ +. ..+.+++ ++.++++|+.|++|. ++++++||+|+
T Consensus 480 iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~-~~-~~~~~~l----~~~~~~~l~~~~~p~-i~~v~~iP~t~ 550 (567)
T PRK06178 480 VEALLG-QHPAVLGSAVVGRPDPDKG-QVPVAFVQLKP-GA-DLTAAAL----QAWCRENMAVYKVPE-IRIVDALPMTA 550 (567)
T ss_pred HHHHHH-hCCCeeEEEEEcCcCcccC-cceEEEEEeCC-CC-cCCHHHH----HHHHHhcCcccCCce-EEEeccCCCCC
Confidence 999995 8999999999998887777 78999998876 43 3454444 446778899999996 88899999999
Q ss_pred CCchhHHHHHHHHHhhc
Q 004825 707 TNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 707 ~GKvdR~~L~~~~~~~~ 723 (728)
+||++|++|++++++++
T Consensus 551 ~GKv~r~~l~~~~~~~~ 567 (567)
T PRK06178 551 TGKVRKQDLQALAEELK 567 (567)
T ss_pred ccceeHHHHHHHHHhhC
Confidence 99999999999998753
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=552.92 Aligned_cols=473 Identities=19% Similarity=0.219 Sum_probs=379.6
Q ss_pred hhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Q 004825 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (728)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~ 260 (728)
..|.++++++|+++|+++.+. .+||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus 39 ~~~~~~a~~~p~~~a~~~~~~--------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~ 110 (516)
T PRK13383 39 TLLAVTAARWPGRTAIIDDDG--------ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGA 110 (516)
T ss_pred HHHHHHHHHCCCCcEEEeCCC--------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCe
Confidence 346677788999999998765 899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhh
Q 004825 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERV 340 (728)
Q Consensus 261 ~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (728)
+++|+++.++.+++.+++++++++++++++..... +.........++... ... ..
T Consensus 111 v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~---------~~~~~~~~~~~~~~~--------------~~~--~~ 165 (516)
T PRK13383 111 DVVPISTEFRSDALAAALRAHHISTVVADNEFAER---------IAGADDAVAVIDPAT--------------AGA--EE 165 (516)
T ss_pred EEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHH---------HHhhhcceEEeccch--------------hhh--hc
Confidence 99999999999999999999999999998754311 111111222221100 000 00
Q ss_pred hccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHH--HHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHH
Q 004825 341 RKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK--AAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 418 (728)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~--~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (728)
. ...+...++.++|+|||||||.||||+++|..... ........+++.++|+++...|++|.+++..++.+
T Consensus 166 ---~----~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~ 238 (516)
T PRK13383 166 ---S----GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLT 238 (516)
T ss_pred ---C----CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHH
Confidence 0 00112245678999999999999999999984322 12222345678899999999999999999888899
Q ss_pred hhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC--CCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 419 LLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 419 L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
+..|+++++.. ..++..+++.++++++|.+.++|+++..+...... ....++++|.+++||+++++++.+++.+.++
T Consensus 239 l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g 317 (516)
T PRK13383 239 IALGGTVLTHR-HFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYG 317 (516)
T ss_pred HhcCCEEEECC-CCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 99999998765 35778899999999999999999999999865321 1235789999999999999999999988775
Q ss_pred CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccc
Q 004825 497 YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYD 576 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~ 576 (728)
..+++.||+||++..+............++|+|++|++++|+|++|++++.|+. |||++.+..... +|.+...
T Consensus 318 -~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~--~Y~~~~~-- 390 (516)
T PRK13383 318 -DILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVT--GRIFVGGELAGT--RYTDGGG-- 390 (516)
T ss_pred -chhhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCc--eEEEEecCcccc--cccCCch--
Confidence 789999999999865443322222345689999999999999999999999987 999997654433 2222211
Q ss_pred cccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEE
Q 004825 577 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 656 (728)
Q Consensus 577 ~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l 656 (728)
..+ .+| ||+|||+|++++||+++++||.||+||++|++|+|.|||.+|. .||.|.+++|++.+++..+ +.+
T Consensus 391 ~~~-----~~g--~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~g-~~~ 461 (516)
T PRK13383 391 KAV-----VDG--MTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALA-AHPAVADNAVIGVPDERFG-HRL 461 (516)
T ss_pred hhe-----ecC--ceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-ceE
Confidence 111 224 9999999999999999999999999999999999999999995 9999999999999887777 889
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHH
Q 004825 657 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716 (728)
Q Consensus 657 ~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 716 (728)
.++|+.++ +. ..+..+ +++.++++++.|++|..++++++||+|++||++|++|+
T Consensus 462 ~~~v~~~~-~~-~~~~~~----l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 462 AAFVVLHP-GS-GVDAAQ----LRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred EEEEEECC-CC-CCCHHH----HHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 99999876 43 234444 55567888999999999999999999999999999985
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-63 Score=573.63 Aligned_cols=525 Identities=17% Similarity=0.139 Sum_probs=383.9
Q ss_pred CCCCCCCCcchHhhhhcccccCCCCCCeEEEEecc-----------CCC--------CCCceeecHHHHHHHHHHHHHHH
Q 004825 167 GGQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDE-----------GDG--------GLPVKSMTLKELRAEVWLVAYAL 227 (728)
Q Consensus 167 ~~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~-----------~~~--------~~~~~~lTY~eL~~~a~~lA~~L 227 (728)
...|+.. ....++|.++++++||++|+.+... ++. .+.++.+||+||.++++++|++|
T Consensus 62 ~~~~~~~---~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L 138 (700)
T PTZ00216 62 RNEWYYG---PNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGL 138 (700)
T ss_pred ccccCCC---CCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHH
Confidence 3456543 3467889999999999999998521 010 12457999999999999999999
Q ss_pred HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhh
Q 004825 228 NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDA 307 (728)
Q Consensus 228 ~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 307 (728)
+++|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++...... .......
T Consensus 139 ~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~-----l~~~~~~ 213 (700)
T PTZ00216 139 AELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPN-----LLRLMKS 213 (700)
T ss_pred HHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHH-----HHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998643210 0011111
Q ss_pred --c-CCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHH
Q 004825 308 --Q-APLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKA 384 (728)
Q Consensus 308 --~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~ 384 (728)
. ...+++++....... .......+|.++...+..............++++|||+|||||||.||||+++|+|+++.
T Consensus 214 ~~~~~~~ii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~ 292 (700)
T PTZ00216 214 GGMPNTTIIYLDSLPASVD-TEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG 292 (700)
T ss_pred ccCCceEEEEECCCccccc-cCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHH
Confidence 1 112333322111000 001123567777665421011111123446899999999999999999999999999988
Q ss_pred HHHHHHhc-----CCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHH-------HHHHhCCcEEEec
Q 004825 385 AADAWCHM-----DIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAK-------FVQDAKVTMLGVV 452 (728)
Q Consensus 385 ~~~~~~~~-----~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~-------~i~~~~vt~l~~~ 452 (728)
+.+....+ .++++|+++++.|++|.++.......+..|+++++.+ +..+.+ .|+++++|++.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~----~~~l~~~~~~~~~~l~~~~pT~~~~v 368 (700)
T PTZ00216 293 ILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGS----PRTLTDTFARPHGDLTEFRPVFLIGV 368 (700)
T ss_pred HHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECC----HHHhhhhhccccchHHHcCCcEEEec
Confidence 77665433 2478899999999999988755555677888776632 233333 6889999999999
Q ss_pred HHHHHHHHcCCCC-------------------------CCCC----------------CcCeeEEEeecCCCCHHHHHHH
Q 004825 453 PSIVRTWKSTNCI-------------------------DGYD----------------WSSIRCFGSTGEASNVDEYLWL 491 (728)
Q Consensus 453 Ps~l~~l~~~~~~-------------------------~~~~----------------l~~lr~i~~gGe~l~~~~~~~~ 491 (728)
|.+++.+.+.... .+.. -+++|.+++||+++++++.+++
T Consensus 369 P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~ 448 (700)
T PTZ00216 369 PRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFV 448 (700)
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHH
Confidence 9999987642100 0000 1579999999999999998777
Q ss_pred HhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCC--ccCCCCCceeEEEEeccccCCCccc
Q 004825 492 MGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGC--PIPQNVPGMGELALSPLIFGASSTL 569 (728)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~--~vp~g~~giGEl~v~~~~~~~~~~~ 569 (728)
...+ + +++|.||+||+++..+.... .....+++|+|++|++++|+|+++. ..+++.. |||+|++..+.. .||
T Consensus 449 ~~~~-~-~l~~~YG~TEt~~~~~~~~~-~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~--GEL~vrG~~v~~-GY~ 522 (700)
T PTZ00216 449 NVVF-G-MVIQGWGLTETVCCGGIQRT-GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPR--GEILLRGPFLFK-GYY 522 (700)
T ss_pred HHHh-h-hHhhccCcccccccccccCC-CCCCCCCcCCcCCCeEEEEeechhhccCCCCCCC--ceEEEcCCcccc-hhc
Confidence 6544 4 89999999999865444332 2335679999999999999998652 3344544 999997665543 357
Q ss_pred cCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeee-cCceeecHHHHHHHHhcCCCCeeee--EEEee
Q 004825 570 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMN-LGGIKVSSVEIERICNAVDSNVLET--AAIGV 646 (728)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~ik-i~G~ri~~~eIE~~l~~~~p~V~~~--~Vv~~ 646 (728)
++++.|++.|..+ | ||+|||+|++++||+|+|+||+||+|| ++|++|+|+|||+++. .||.|.++ +|++.
T Consensus 523 ~~pe~T~~~f~~d----G--w~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~-~~p~V~~~~~~v~~~ 595 (700)
T PTZ00216 523 KQEELTREVLDED----G--WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYG-QNELVVPNGVCVLVH 595 (700)
T ss_pred CChhHhhhhcccc----C--CeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHh-cCcCcccceEEEEEe
Confidence 7889999988654 3 999999999999999999999999999 8999999999999995 99999973 34433
Q ss_pred cCCCCCceEEEEEEEecCC---------CCC-----CCCHHHHHHHHHHHH-----HhhCCCCcccceEEECCC------
Q 004825 647 PPPDGGPEQLTIVVVFKDS---------NYT-----PPDLNQLRMSFNSAV-----QKKLNPLFKVSHVVPLPS------ 701 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~---------~~~-----~~~~~~l~~~l~~~l-----~~~Lp~~~~P~~i~~v~~------ 701 (728)
++ . ..++|+|++... +.. -....++++.+.+.+ +..|..|.+|..|.++++
T Consensus 596 ~~--~--~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~ 671 (700)
T PTZ00216 596 PA--R--SYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPEN 671 (700)
T ss_pred cC--C--ceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCC
Confidence 22 2 679999987530 110 011123344444433 246888889988888753
Q ss_pred CCCCCCCchhHHHHHHHHHh
Q 004825 702 LPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 702 lP~t~~GKvdR~~L~~~~~~ 721 (728)
=-+|+++|+.|+.+.+.|++
T Consensus 672 g~lT~t~K~~R~~i~~~y~~ 691 (700)
T PTZ00216 672 GVLTAAMKLKRRVIDERYAD 691 (700)
T ss_pred CCCChhhccchHHHHHHHHH
Confidence 34799999999999998876
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=552.26 Aligned_cols=521 Identities=19% Similarity=0.213 Sum_probs=396.3
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
....|.+.++.+|+++|+++.+. .+||+||+++++++|..|.+.|+++||+|+++++|++++++++|||+++
T Consensus 22 ~~~~~~~~~~~~p~~~a~~~~~~--------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 93 (567)
T PLN02479 22 PLWFLERAAVVHPTRKSVVHGSV--------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMA 93 (567)
T ss_pred HHHHHHHHHhhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhC
Confidence 34557778888999999998766 8999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhh------cCCcEEEEcCCCCC---cccccCCC
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDA------QAPLAIVIPAKGSS---FSMKLRDG 329 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~---~~~~~~~~ 329 (728)
|++++|++|.++.+++.+++++++++++|+++......... ...... ....++++...... .......+
T Consensus 94 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (567)
T PLN02479 94 GAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEA--LKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKG 171 (567)
T ss_pred CcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHH--HHHHhhcccccCCCceEEEecCCcCCccccccccccC
Confidence 99999999999999999999999999999987543211000 010000 11123333211100 00011123
Q ss_pred CcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchh
Q 004825 330 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWM 409 (728)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 409 (728)
...|.+++..... . .........+++++++|||||||.||||+++|+++..........++++.+|++++..|++|.
T Consensus 172 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~ 248 (567)
T PLN02479 172 AIEYEKFLETGDP--E-FAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHC 248 (567)
T ss_pred cccHHHHHhcccc--c-cccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhh
Confidence 4456666543221 0 001112234577889999999999999999999987766555567788999999999999999
Q ss_pred hhHHHHH-HHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCC-CCCcCeeEEEeecCCCCHHH
Q 004825 410 MGPWLVY-ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDG-YDWSSIRCFGSTGEASNVDE 487 (728)
Q Consensus 410 ~~~~~~~-~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~-~~l~~lr~i~~gGe~l~~~~ 487 (728)
.++...+ .++..|+++++. ..++..+++.++++++|++..+|+++..|........ ..+++++.++++|+++++.+
T Consensus 249 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~ 326 (567)
T PLN02479 249 NGWCFTWTLAALCGTNICLR--QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSV 326 (567)
T ss_pred hhHHHHHHHHhhcCceEecc--CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHH
Confidence 8874433 455666665543 3577889999999999999999999999987543222 25688999999999999999
Q ss_pred HHHHHhccCCCCeEecccccccccccccCCcc---------c-ccccccccCCCCCce-EEEEc-CCCCccCCCCCceeE
Q 004825 488 YLWLMGRALYKPVIEYCGGTEIGGGFITGSLL---------Q-AQSLAAFSTPAMGCK-LFILG-NDGCPIPQNVPGMGE 555 (728)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---------~-~~~~~~iG~p~~~~~-v~i~d-~~g~~vp~g~~giGE 555 (728)
.+++.+. +.++++.||+||+++.++..... . .......|.|.+|+. ++|+| +.++++|.+...+||
T Consensus 327 ~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GE 404 (567)
T PLN02479 327 LFAMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGE 404 (567)
T ss_pred HHHHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceE
Confidence 8888754 57899999999986433321100 0 011135688888875 89999 468888765212499
Q ss_pred EEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCC
Q 004825 556 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 635 (728)
Q Consensus 556 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~ 635 (728)
|++.+..+.. .|+++++.+++.|.. | ||+|||+|++++||+++|+||.||+||++|++|+|.|||.+|. .|
T Consensus 405 l~v~g~~~~~-GY~~~~~~t~~~~~~-----g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~ 475 (567)
T PLN02479 405 IVMRGNMVMK-GYLKNPKANEEAFAN-----G--WFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVY-TH 475 (567)
T ss_pred EEEeccchhh-hhhcCcccccchhcC-----C--ceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHH-hC
Confidence 9997655433 346677888877742 3 9999999999999999999999999999999999999999995 89
Q ss_pred CCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHH
Q 004825 636 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 715 (728)
Q Consensus 636 p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L 715 (728)
|.|.+++|++.+++..+ +.+++++++.. +....+...+.+.|+++++++||.|++|..+++ ++||+|++||++|+.|
T Consensus 476 ~~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L 552 (567)
T PLN02479 476 PAVLEASVVARPDERWG-ESPCAFVTLKP-GVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVL 552 (567)
T ss_pred cccceeeEEeccchhcC-ceeEEEEEecC-cccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHHH
Confidence 99999999998877666 78999999876 331122245566788889999999999988776 6799999999999999
Q ss_pred HHHHHh--hcccCCC
Q 004825 716 RKQLAQ--LDQNSKL 728 (728)
Q Consensus 716 ~~~~~~--~~~~~~l 728 (728)
++.+.. +..+|||
T Consensus 553 ~~~~~~~~~~~~~~~ 567 (567)
T PLN02479 553 RAKAKEMGPVKKSRL 567 (567)
T ss_pred HHHHHhhCCcccccC
Confidence 998776 6677765
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-62 Score=536.56 Aligned_cols=427 Identities=17% Similarity=0.153 Sum_probs=347.5
Q ss_pred eecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEE
Q 004825 210 SMTLKELRAEVWLVAYALNALGL-DKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288 (728)
Q Consensus 210 ~lTY~eL~~~a~~lA~~L~~~Gv-~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~ 288 (728)
-+.|+||+++++++|++|++.|+ ++|++|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 47899999999999999999998 57999999999999999999999999999999999999999999999999999998
Q ss_pred ecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCC
Q 004825 289 QDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTT 368 (728)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGST 368 (728)
++..... ... .. . .......++++++++||||||
T Consensus 99 ~~~~~~~------------------~~~-------------~~------------~---~~~~~~~~~~~~~i~~TSGTT 132 (452)
T PRK07445 99 LDQLKLS------------------HPP-------------PL------------P---SQGILPNLETGWIMIPTGGSS 132 (452)
T ss_pred cCccccc------------------cCC-------------CC------------C---ccccCCCCCCcEEEEeCCCCC
Confidence 7642100 000 00 0 000123468999999999999
Q ss_pred CCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcE
Q 004825 369 GEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTM 448 (728)
Q Consensus 369 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~ 448 (728)
|.||||+++|++++..+.+....+++.+ ++.++..|++|.+++..++.+|+.|+++++.+.. ..........++++|+
T Consensus 133 G~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~-~~~~~~~~~~~~~~t~ 210 (452)
T PRK07445 133 GQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYK-RLKSGQELPPNPSDFF 210 (452)
T ss_pred CCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChH-hccchhhhhhhcCceE
Confidence 9999999999999888887777777765 4678889999999998888999999999998632 1222234456789999
Q ss_pred EEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCccc-ccccccc
Q 004825 449 LGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ-AQSLAAF 527 (728)
Q Consensus 449 l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~i 527 (728)
+.++|++++.+++. ....+++||.+++||+++++++.+++.. . ++++++.||+||++..++...+.. .....++
T Consensus 211 ~~~vP~~l~~l~~~---~~~~l~~l~~i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 285 (452)
T PRK07445 211 LSLVPTQLQRLLQL---RPQWLAQFRTILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETASQIATLKPDDFLAGNNSS 285 (452)
T ss_pred EEehHHHHHHHHhh---ChhhhhcceEEEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcccccccCchhhccCCCcC
Confidence 99999999999863 2334789999999999999999887764 3 588999999999876544332221 1234679
Q ss_pred cCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEE
Q 004825 528 STPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRA 607 (728)
Q Consensus 528 G~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~ 607 (728)
|+|++|++++|+ .|+. |||+|.+..+..+ |++. +. ...+||+|||+|++++||+++|
T Consensus 286 G~~~p~~~v~i~--------~g~~--Gel~v~g~~~~~g--Y~~~----------~~-~~~g~~~TGDl~~~d~dG~l~~ 342 (452)
T PRK07445 286 GQVLPHAQITIP--------ANQT--GNITIQAQSLALG--YYPQ----------IL-DSQGIFETDDLGYLDAQGYLHI 342 (452)
T ss_pred CccCCCCeEEEc--------CCCc--ceEEEeCCccchh--hcCC----------cc-CCCCEEECCCEEEEcCCCCEEE
Confidence 999999999998 3444 9999966543322 2221 11 1234999999999999999999
Q ss_pred EcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhC
Q 004825 608 HGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKL 687 (728)
Q Consensus 608 ~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L 687 (728)
.||.||+||++|+||+|.|||++|. .||+|.+|+|++.+++..| +.++|+++..+ +. .+.++ ++++++++|
T Consensus 343 ~GR~dd~I~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~~~~~~g-~~~~a~vv~~~-~~--~~~~~----l~~~~~~~L 413 (452)
T PRK07445 343 LGRNSQKIITGGENVYPAEVEAAIL-ATGLVQDVCVLGLPDPHWG-EVVTAIYVPKD-PS--ISLEE----LKTAIKDQL 413 (452)
T ss_pred EeecCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEeccCcCCC-cEEEEEEEeCC-CC--CCHHH----HHHHHHHhC
Confidence 9999999999999999999999995 8999999999999988777 88999998876 32 34444 455688899
Q ss_pred CCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 688 NPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 688 p~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+.|++|..++++++||+|++||++|++|++++++
T Consensus 414 ~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 447 (452)
T PRK07445 414 SPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQ 447 (452)
T ss_pred CcccCCeEEEEecCCCCCCCcccCHHHHHHHHHH
Confidence 9999999999999999999999999999999876
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-62 Score=565.16 Aligned_cols=524 Identities=16% Similarity=0.122 Sum_probs=388.5
Q ss_pred hHhhhhcccccCCCCCCeEEEEec---------cCC------CCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCD---------EGD------GGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAID 241 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~---------~~~------~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~ 241 (728)
++..++|.+.++++||++|+.+.. .++ ..+.++.+||+||.++++++|++|.++|+++||+|+|+
T Consensus 58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~ 137 (696)
T PLN02387 58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF 137 (696)
T ss_pred CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 345678899999999999995421 000 12456679999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCC
Q 004825 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAK 318 (728)
Q Consensus 242 ~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~ 318 (728)
++|+++|++++|||+++|+++||+++.++.+++.++|++++++++|++..... .. ......+. .++.++..
T Consensus 138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~------~l~~~~~~~~~l~~ii~~~~~ 211 (696)
T PLN02387 138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLK------KLIDISSQLETVKRVIYMDDE 211 (696)
T ss_pred cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHH------HHHHHhhccCCceEEEEECCC
Confidence 99999999999999999999999999999999999999999999999864321 11 22222221 23333321
Q ss_pred CCCccc----ccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhc-C
Q 004825 319 GSSFSM----KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-D 393 (728)
Q Consensus 319 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~ 393 (728)
...... ........|.++...+... ........++++++|+|||||||.||||+++|+|++..+......+ +
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~ 288 (696)
T PLN02387 212 GVDSDSSLSGSSNWTVSSFSEVEKLGKEN---PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPK 288 (696)
T ss_pred CchhhhhhhccCCcEEEEHHHHHHhhccC---CCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCC
Confidence 110000 0001123466665543221 1112234679999999999999999999999999998877665543 6
Q ss_pred CCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCC-------CcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCC
Q 004825 394 IRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSP-------LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID 466 (728)
Q Consensus 394 ~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~-------~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~ 466 (728)
++++|++++++|++|.++....+..+..|+++.+..... .+..++..++++++|++.++|+++..+.+.....
T Consensus 289 ~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~ 368 (696)
T PLN02387 289 LGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKK 368 (696)
T ss_pred CCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHH
Confidence 889999999999999999865556678888876643211 1234567899999999999999999886431000
Q ss_pred -------------------------------C--C-------------CC-cCeeEEEeecCCCCHHHHHHHHhccCCCC
Q 004825 467 -------------------------------G--Y-------------DW-SSIRCFGSTGEASNVDEYLWLMGRALYKP 499 (728)
Q Consensus 467 -------------------------------~--~-------------~l-~~lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (728)
. . .+ +++|.+++||+++++++.+++...+ +++
T Consensus 369 ~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~ 447 (696)
T PLN02387 369 VDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-GAP 447 (696)
T ss_pred HhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCC
Confidence 0 0 01 5899999999999999987776555 489
Q ss_pred eEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCcc---CCCCCceeEEEEeccccCCCccccCcccc
Q 004825 500 VIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPI---PQNVPGMGELALSPLIFGASSTLLNANHY 575 (728)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~v---p~g~~giGEl~v~~~~~~~~~~~~~~~~~ 575 (728)
+++.||+||+++..+.... .....+++|+|+++++++|+| +++... .++. .|||+|.++.+.. .||++++.|
T Consensus 448 v~~~YG~TEt~~~~~~~~~-~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p--~GEi~vrGp~v~~-GY~~~pe~T 523 (696)
T PLN02387 448 IGQGYGLTETCAGATFSEW-DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMP--RGEIVIGGPSVTL-GYFKNQEKT 523 (696)
T ss_pred eeEeechhhcccceeecCc-ccCCCCccCCCCCceEEEEeeccccCcccCCCCCC--CceEEeccCcccc-hhcCCHHHH
Confidence 9999999999866554433 233567899999999999998 444322 2222 3999996655433 356788889
Q ss_pred ccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeec-CceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004825 576 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 654 (728)
Q Consensus 576 ~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~ 654 (728)
++.|..++ +|.+||+|||+|++++||+|+++||+||+||+ +|++|+|+|||++|. .||.|.+|+|++.+. . .
T Consensus 524 ~~~f~~d~--~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~-~~p~V~~~~V~g~~~--~--~ 596 (696)
T PLN02387 524 DEVYKVDE--RGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS-VSPYVDNIMVHADPF--H--S 596 (696)
T ss_pred hhhhcccc--CCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh-cCCCeeEEEEEecCC--c--c
Confidence 98885433 35679999999999999999999999999998 699999999999995 999999999998542 1 5
Q ss_pred EEEEEEEecCC---------CCCCC------CHHHHHHHHHHHH-----HhhCCCCcccceEEECCCCC------CCCCC
Q 004825 655 QLTIVVVFKDS---------NYTPP------DLNQLRMSFNSAV-----QKKLNPLFKVSHVVPLPSLP------RTATN 708 (728)
Q Consensus 655 ~l~a~vv~~~~---------~~~~~------~~~~l~~~l~~~l-----~~~Lp~~~~P~~i~~v~~lP------~t~~G 708 (728)
.++|+|++... +.... ...++++.+.+.+ +.+|+.|.+|..|.++++-. +|++.
T Consensus 597 ~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~ 676 (696)
T PLN02387 597 YCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAAL 676 (696)
T ss_pred eEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhh
Confidence 78999987541 11000 1123344443333 34699999999998887633 78888
Q ss_pred chhHHHHHHHHHh
Q 004825 709 KVMRRVLRKQLAQ 721 (728)
Q Consensus 709 KvdR~~L~~~~~~ 721 (728)
|+.|+.+.+.|++
T Consensus 677 K~~R~~i~~~y~~ 689 (696)
T PLN02387 677 KLKREQIRKKFKD 689 (696)
T ss_pred hhhhHHHHHHHHH
Confidence 9999999999986
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=558.18 Aligned_cols=517 Identities=15% Similarity=0.111 Sum_probs=382.8
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEEcC
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL---GLDKG-----------SAIAIDMP 243 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~---Gv~~g-----------d~Vai~~~ 243 (728)
...++|.++++++|+++|+++... ...++.+||+||.++++++|++|.+. |+++| |+|+|+++
T Consensus 62 ~l~~~l~~~~~~~p~~~Al~~~~~---g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~ 138 (746)
T PTZ00342 62 HIMKLLLEKYKLNNNKIAIVEHSC---GEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGS 138 (746)
T ss_pred hHHHHHHHHHhhcCCceeEeccCC---CCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcC
Confidence 455778889999999999986422 11246899999999999999999974 99999 99999999
Q ss_pred CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCC
Q 004825 244 MNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGS 320 (728)
Q Consensus 244 ~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~ 320 (728)
|+++|+++++||+++|++.||+++.++.+++.++|++++++++|++.... +.. ......+. .+++++....
T Consensus 139 N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~ 212 (746)
T PTZ00342 139 NSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLV------EGLLERKNELPHLKKLIILDTLIK 212 (746)
T ss_pred CCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHH------HHHHHhhccCCCceEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999975432 111 12222222 3334432110
Q ss_pred Cc-----------------ccccC--------------------------CCCcCHHHHHHhhhc-------------cc
Q 004825 321 SF-----------------SMKLR--------------------------DGDISWLDFLERVRK-------------LK 344 (728)
Q Consensus 321 ~~-----------------~~~~~--------------------------~~~~~~~~~~~~~~~-------------~~ 344 (728)
.. ..... .....|.++...... ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 292 (746)
T PTZ00342 213 SKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNK 292 (746)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhc
Confidence 00 00000 000112222211100 00
Q ss_pred cCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhc--CCCCCCEEEecCCcchhhhHHHHHHHhhhC
Q 004825 345 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM--DIRKADIVAWPTNLGWMMGPWLVYASLLNG 422 (728)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (728)
..........++++|+|+|||||||.||||++||+|+++.+....... .....|++++++|++|.++....+.+++.|
T Consensus 293 ~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G 372 (746)
T PTZ00342 293 TTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLG 372 (746)
T ss_pred ccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcC
Confidence 011122345689999999999999999999999999998876554321 233568999999999999987777889999
Q ss_pred cEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcC--------CCCCC---------------------------
Q 004825 423 ASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKST--------NCIDG--------------------------- 467 (728)
Q Consensus 423 ~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~--------~~~~~--------------------------- 467 (728)
+++++.++ ++..+++.|+++++|+++++|.++..+.+. .....
T Consensus 373 ~~i~~~~~--~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (746)
T PTZ00342 373 GTINIWSK--DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITH 450 (746)
T ss_pred CEEEEeCC--CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 99999864 678899999999999999999999998652 10000
Q ss_pred -------CCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCC-CCceEEEE
Q 004825 468 -------YDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFIL 539 (728)
Q Consensus 468 -------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~v~i~ 539 (728)
.-.++||.+++||+++++++.+++...++ ++++++||+||+++..+.... .....+++|+|+ |+++++|+
T Consensus 451 v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g-~~i~~gYGlTEt~~~~~~~~~-~~~~~gsvG~p~~pg~e~ki~ 528 (746)
T PTZ00342 451 ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN-VNYYQGYGLTETTGPIFVQHA-DDNNTESIGGPISPNTKYKVR 528 (746)
T ss_pred HHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC-CCEEEeeccCcccceeeeccC-CCCCcccccCcCCCcEEEEEe
Confidence 00158999999999999999999987664 899999999999865554433 234568999998 99999999
Q ss_pred c-CCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeec-
Q 004825 540 G-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNL- 617 (728)
Q Consensus 540 d-~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki- 617 (728)
| +++...+.+.. |||+|.++.+.. .|+++++.|++.|..+ | ||+|||+|++++||+|+|+||+||+||+
T Consensus 529 d~~~~~~~~~~~~--GEl~vrGp~v~~-GY~~~pe~T~~~f~~d----G--W~~TGDig~~d~dG~l~i~gR~kdlIkls 599 (746)
T PTZ00342 529 TWETYKATDTLPK--GELLIKSDSIFS-GYFLEKEQTKNAFTED----G--YFKTGDIVQINKNGSLTFLDRSKGLVKLS 599 (746)
T ss_pred cccccccCCCCCc--eEEEEecCcccc-cccCChhhhhhhcCcC----C--cccCCcEEEECCCCeEEEEccCCCeEEeC
Confidence 8 43444444433 999996654432 2567889999988643 3 9999999999999999999999999995
Q ss_pred CceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCC---------------CCCCCCH----------
Q 004825 618 GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS---------------NYTPPDL---------- 672 (728)
Q Consensus 618 ~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~---------------~~~~~~~---------- 672 (728)
+|++|+|.+||++|. .||.|.+|+|++... . ..++|+|++... +....+.
T Consensus 600 ~Ge~I~p~eIE~~l~-~~p~V~~~~VvG~~~--~--~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~ 674 (746)
T PTZ00342 600 QGEYIETDMLNNLYS-QISFINFCVVYGDDS--M--DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETIN 674 (746)
T ss_pred CCEEEchHHHHHHHh-cCCCccEEEEEccCC--c--cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhc
Confidence 799999999999995 999999999998421 1 468999987530 1100011
Q ss_pred -HHHHHHHHHHHH-----hhCCCCcccceEEECC-CCC----CCCCCchhHHHHHHHHHh
Q 004825 673 -NQLRMSFNSAVQ-----KKLNPLFKVSHVVPLP-SLP----RTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 673 -~~l~~~l~~~l~-----~~Lp~~~~P~~i~~v~-~lP----~t~~GKvdR~~L~~~~~~ 721 (728)
.++++.+.+.+. ..|+.|.++..|..++ .+. +||+.|+.|+.+.+.++.
T Consensus 675 ~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~ 734 (746)
T PTZ00342 675 NNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAF 734 (746)
T ss_pred cHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHH
Confidence 123343443332 3699999998888775 332 999999999999988874
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=546.00 Aligned_cols=497 Identities=20% Similarity=0.197 Sum_probs=392.8
Q ss_pred ccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE
Q 004825 184 SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVV 263 (728)
Q Consensus 184 ~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~v 263 (728)
..+++++|+++|+++...+ +.+||.||.++++++|++|++.|+++|++|++++++++++++++|||+++|++++
T Consensus 4 ~~~a~~~p~~~a~~~~~~~------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~ 77 (511)
T PRK13391 4 GIHAQTTPDKPAVIMASTG------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYT 77 (511)
T ss_pred hhhHhhCCCceEEEecCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEe
Confidence 3466789999999885331 2899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC--cEEEEcCCCCCcccccCCCCcCHHHHHHhhh
Q 004825 264 SIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLDFLERVR 341 (728)
Q Consensus 264 pl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (728)
|+++.++.+++.++++++++++++++....... ......... ..+.+..... ......+.+......
T Consensus 78 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 146 (511)
T PRK13391 78 CVNSHLTPAEAAYIVDDSGARALITSAAKLDVA-----RALLKQCPGVRHRLVLDGDGE------LEGFVGYAEAVAGLP 146 (511)
T ss_pred ccccccCHHHHHHHHhccCCcEEEEchhhHHHH-----HHHHhcCCCceEEEEecCCCC------CcccccHHHHhcCCC
Confidence 999999999999999999999999987532110 011111111 1122211110 011122332221110
Q ss_pred ccccCccccccCCCCCceEEEecCCCCCCCceEEec--CcHHHH---HHHHHHHhcCCCCCCEEEecCCcchhhhHHHHH
Q 004825 342 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT--NATPFK---AAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 416 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~s--h~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 416 (728)
.......++.++++|||||||.||||+++ |.++.. ........+++..++++++..|++|..++...+
T Consensus 147 -------~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~ 219 (511)
T PRK13391 147 -------ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVM 219 (511)
T ss_pred -------CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHH
Confidence 01112335678999999999999999964 666532 233344567788999999999999999887778
Q ss_pred HHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHhc
Q 004825 417 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494 (728)
Q Consensus 417 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 494 (728)
.++..|+++++.+. .++..+++.++++++|++.++|+++..+++... ....+++++|.+++||+++++++.+++.+.
T Consensus 220 ~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~ 298 (511)
T PRK13391 220 LVIRLGGTVIVMEH-FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDW 298 (511)
T ss_pred HHHHcCceEEECCC-CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHH
Confidence 89999999999864 577899999999999999999999998876532 223457899999999999999999988876
Q ss_pred cCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccc
Q 004825 495 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 574 (728)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~ 574 (728)
++ ..+++.||+||++.+............+++|+|+++ .++|+|++|++++.|+. |||++.+... . .|+.+++.
T Consensus 299 ~g-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~--Gel~~~g~~~-~-gy~~~~~~ 372 (511)
T PRK13391 299 WG-PIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELPPGEP--GTIWFEGGRP-F-EYLNDPAK 372 (511)
T ss_pred cC-CceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecCcc-e-EEcCChhH
Confidence 64 789999999999865443222222345789999999 69999999999999987 9999976632 2 35667777
Q ss_pred cccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004825 575 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 654 (728)
Q Consensus 575 ~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~ 654 (728)
++..|..+ .+||+|||+|++++||.++++||.||++|++|++|++.|||++|. .||.|.+|+|++.+++..| +
T Consensus 373 ~~~~~~~~-----~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~-~~~~v~~~~v~~~~~~~~g-~ 445 (511)
T PRK13391 373 TAEARHPD-----GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLI-THPKVADAAVFGVPNEDLG-E 445 (511)
T ss_pred hHHhhccC-----CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEecCCcccC-c
Confidence 77766543 249999999999999999999999999999999999999999996 8999999999999887777 7
Q ss_pred EEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 655 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
.+++++++.. +. .....+.+.++++++++||.|++|..+..++++|+|++||++|+.|++.+..
T Consensus 446 ~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 446 EVKAVVQPVD-GV--DPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred eeEEEEEECC-CC--CcccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 8889988765 33 1223345677778999999999999999999999999999999999998754
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-61 Score=547.90 Aligned_cols=507 Identities=21% Similarity=0.228 Sum_probs=395.1
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
....|+++++++|+++|+++.+. ++||.||.++++++|.+|++ .|+++|++|+|+++|++++++++|||++
T Consensus 25 l~~~l~~~a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 96 (560)
T PRK08974 25 LVDMFEQAVARYADQPAFINMGE--------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILR 96 (560)
T ss_pred HHHHHHHHHHhCCCCceEEECCc--------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 44667888899999999998765 99999999999999999985 8999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCccc-------------
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSM------------- 324 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------- 324 (728)
+|++++|++|.++.+++.+++++++++++++++....... .+........+++.........
T Consensus 97 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (560)
T PRK08974 97 AGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLE-----KVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYI 171 (560)
T ss_pred cCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHH-----HHhhhcCcceEEEecccccccccccccccchhhhc
Confidence 9999999999999999999999999999999864321100 1111111111111110000000
Q ss_pred ------ccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcC---CC
Q 004825 325 ------KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD---IR 395 (728)
Q Consensus 325 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~---~~ 395 (728)
........+.+....... .........++++++|+|||||||.||||+++|+++...+......+. ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~ 248 (560)
T PRK08974 172 KRLVPKYHLPDAISFRSALHKGRR---MQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHP 248 (560)
T ss_pred ccccccccCCCcccHHHHhhccCC---CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCC
Confidence 000011122222211110 111122356789999999999999999999999999876654433332 34
Q ss_pred CCCEEEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCee
Q 004825 396 KADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 474 (728)
Q Consensus 396 ~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr 474 (728)
.++.++...|++|.++. ...+.++..|+++++.....++..+++.++++++|++..+|++++.|.........+++++|
T Consensus 249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr 328 (560)
T PRK08974 249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLK 328 (560)
T ss_pred CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCcccee
Confidence 45678888898888876 45677888999988876545677899999999999999999999999876554556678999
Q ss_pred EEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCcee
Q 004825 475 CFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMG 554 (728)
Q Consensus 475 ~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giG 554 (728)
.+++||+++++.+.+++.+.+ ++++++.||+||++..++...........++|.|++|+.++|+|++++++|.|+. |
T Consensus 329 ~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--G 405 (560)
T PRK08974 329 LSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEP--G 405 (560)
T ss_pred EEEecCccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCCc--e
Confidence 999999999999988887765 5899999999999876554443333345789999999999999999999999986 9
Q ss_pred EEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcC
Q 004825 555 ELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAV 634 (728)
Q Consensus 555 El~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~ 634 (728)
||+|.+..+..+ |+++++.++..|. +| ||+|||+|+++++|.++++||.||+|+++|.+|+|.+||++|. .
T Consensus 406 el~v~g~~~~~g-y~~~~~~~~~~~~-----~g--~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~-~ 476 (560)
T PRK08974 406 ELWVKGPQVMLG-YWQRPEATDEVIK-----DG--WLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVM-L 476 (560)
T ss_pred EEEEecCCcchh-hcCChhhhhhhhh-----cC--CcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHH-h
Confidence 999976655433 4556677776662 23 9999999999999999999999999999999999999999995 9
Q ss_pred CCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHH
Q 004825 635 DSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRV 714 (728)
Q Consensus 635 ~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~ 714 (728)
||+|.+++|++.+++..+ +.++++++... . ..+.+ .++++++++|+.|++|..+.++++||+|++||++|++
T Consensus 477 ~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~-~--~~~~~----~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~ 548 (560)
T PRK08974 477 HPKVLEVAAVGVPSEVSG-EAVKIFVVKKD-P--SLTEE----ELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRE 548 (560)
T ss_pred CCCeeEEEEEeeecCCcc-eEEEEEEECCC-C--CCCHH----HHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHH
Confidence 999999999999887777 77777776543 2 23333 4555688899999999999999999999999999999
Q ss_pred HHHHHHh
Q 004825 715 LRKQLAQ 721 (728)
Q Consensus 715 L~~~~~~ 721 (728)
|++...+
T Consensus 549 l~~~~~~ 555 (560)
T PRK08974 549 LRDEARA 555 (560)
T ss_pred HHHHHHh
Confidence 9988765
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-61 Score=540.21 Aligned_cols=487 Identities=21% Similarity=0.211 Sum_probs=383.6
Q ss_pred eEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHH
Q 004825 194 IVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLE 273 (728)
Q Consensus 194 ~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~ 273 (728)
.|++..++ .+||.||.++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++|++|.++.++
T Consensus 3 ~~~~~~~~--------~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 74 (509)
T PRK12406 3 ATIISGDR--------RRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEE 74 (509)
T ss_pred eEEEECCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHH
Confidence 46666555 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCc--EEEEcCCCC---C----cc-cccCCCCcCHHHHHHhhhcc
Q 004825 274 ISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPL--AIVIPAKGS---S----FS-MKLRDGDISWLDFLERVRKL 343 (728)
Q Consensus 274 l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~---~----~~-~~~~~~~~~~~~~~~~~~~~ 343 (728)
+.++++++++++++++...... +.+..... .+.+..... . .. .........|.+......
T Consensus 75 ~~~~l~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 144 (509)
T PRK12406 75 IAYILEDSGARVLIAHADLLHG--------LASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE-- 144 (509)
T ss_pred HHHHHhccCCcEEEEccchhhh--------hhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccC--
Confidence 9999999999999998754321 11111111 111110000 0 00 001122344554432211
Q ss_pred ccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHH---HHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhh
Q 004825 344 KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLL 420 (728)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (728)
......++++++++|||||||.||||+++|.+..+. .......+++.++++++...|++|..+....+.++.
T Consensus 145 -----~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 219 (509)
T PRK12406 145 -----PYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGR 219 (509)
T ss_pred -----ccCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHh
Confidence 112335689999999999999999999987764433 333345678899999999999999988766667889
Q ss_pred hCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCC
Q 004825 421 NGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 498 (728)
Q Consensus 421 ~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (728)
.|+++++.+. .++..+++.++++++|++.++|+++..|+.... ....+++++|.+++||+++++++.+++.+.++ +
T Consensus 220 ~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~-~ 297 (509)
T PRK12406 220 LGGVLVLQPR-FDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWG-P 297 (509)
T ss_pred hheEEEEccC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcC-C
Confidence 9999988764 577889999999999999999999999987543 23456789999999999999999999887664 7
Q ss_pred CeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccc
Q 004825 499 PVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY 578 (728)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~ 578 (728)
.+++.||+||++.+.+.........++++|+|++++.++|+|+++++++.|.. |||++.+......+|+.+++.++..
T Consensus 298 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~~~y~~~~~~~~~~ 375 (509)
T PRK12406 298 VIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEI--GEIYSRIAGNPDFTYHNKPEKRAEI 375 (509)
T ss_pred cEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCc--eEEEEECCccccccccCCchhcccc
Confidence 89999999999875543332222345789999999999999999999999987 9999966544322344555555544
Q ss_pred cccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEE
Q 004825 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 658 (728)
Q Consensus 579 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a 658 (728)
+. ..||+|||+|++++||.++++||.||+||++|++|++.|||++|. .+|+|.+++|++.++...+ +.+++
T Consensus 376 ~~-------~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~ 446 (509)
T PRK12406 376 DR-------GGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLH-AVPGVHDCAVFGIPDAEFG-EALMA 446 (509)
T ss_pred cC-------CCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeeeccccC-ceeEE
Confidence 32 239999999999999999999999999999999999999999996 8999999999999887666 78899
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 659 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 659 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
++++.+ +. ..+.+++ ++.+++.|++|++|..++++++||+|++||++|++|++.+...
T Consensus 447 ~v~~~~-~~-~~~~~~l----~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~ 504 (509)
T PRK12406 447 VVEPQP-GA-TLDEADI----RAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWAN 504 (509)
T ss_pred EEEECC-CC-CCCHHHH----HHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhh
Confidence 998876 33 2344444 4467888999999999999999999999999999999887653
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-61 Score=553.69 Aligned_cols=521 Identities=20% Similarity=0.179 Sum_probs=386.8
Q ss_pred cchHhhhhcccccCCCCCCeEEEEec-cCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Q 004825 175 FVNPAKNCLSVNSKRSLDDIVIRWCD-EGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL 253 (728)
Q Consensus 175 ~~~~~~~~l~~~~~~~pd~~Al~~~~-~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~l 253 (728)
..++..++|.+.++++|+++|+.+.. ..+..+.+..+||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|
T Consensus 40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l 119 (660)
T PLN02430 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME 119 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 44567788988999999999997643 11122345568999999999999999999999999999999999999999999
Q ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC--CcEEEEcCCCCCccc---ccC
Q 004825 254 AIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA--PLAIVIPAKGSSFSM---KLR 327 (728)
Q Consensus 254 A~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~--~~~~~i~~~~~~~~~---~~~ 327 (728)
||+++|+++||+++.++++++.+++++++++++|+++.... ... ......+ ..++.+......... ...
T Consensus 120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 194 (660)
T PLN02430 120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK-----ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIG 194 (660)
T ss_pred HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH-----HHHhhhcccCCCceEEEEECCCChHHhhhhhcCC
Confidence 99999999999999999999999999999999999764210 000 0001111 122333211100000 000
Q ss_pred CCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh-----cCCCCCCEEEe
Q 004825 328 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH-----MDIRKADIVAW 402 (728)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~-----~~~~~~d~~l~ 402 (728)
....+|.++...+... ........++++++|+|||||||.||||+++|+|++..+...... .+++++|++++
T Consensus 195 ~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls 271 (660)
T PLN02430 195 VKTYSWIDFLHMGKEN---PSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLS 271 (660)
T ss_pred cEEEEHHHHHHhhccC---CCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEE
Confidence 1124577776544321 111223467999999999999999999999999998877654322 25778999999
Q ss_pred cCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC------------------
Q 004825 403 PTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC------------------ 464 (728)
Q Consensus 403 ~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~------------------ 464 (728)
+.|++|.++....+.++..|++++++.+ ++..+++.|++.++|++.++|.+++.+.+...
T Consensus 272 ~lPl~H~~~~~~~~~~l~~G~~i~~~~~--~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 349 (660)
T PLN02430 272 FLPLAHILDRMIEEYFFRKGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALY 349 (660)
T ss_pred eCcHHHHHHHHHHHHHHHcCCEEEEeCC--ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999988655677899999988764 45779999999999999999999988764200
Q ss_pred -------------CCCC---C----------C-cCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCC
Q 004825 465 -------------IDGY---D----------W-SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGS 517 (728)
Q Consensus 465 -------------~~~~---~----------l-~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 517 (728)
.... + + +++|.+++||+++++++.+++ +.++.+.+++.||+||+++.++...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~-~~~~~~~i~~~YG~TE~~~~~~~~~ 428 (660)
T PLN02430 350 KYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL-RVTSCAFVVQGYGLTETLGPTTLGF 428 (660)
T ss_pred HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH-HHhcCCCeeeecchhhhhhceEeec
Confidence 0000 0 1 579999999999999986555 4555578999999999987655444
Q ss_pred cccccccccccCCCCCceEEEEc--CCC-CccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeC
Q 004825 518 LLQAQSLAAFSTPAMGCKLFILG--NDG-CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG 594 (728)
Q Consensus 518 ~~~~~~~~~iG~p~~~~~v~i~d--~~g-~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TG 594 (728)
+......+++|+|.++++++|.| +.| .+++.+.. |||+|.++.+.. .|+++++.|++.|. +| ||+||
T Consensus 429 ~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~--GEi~vrg~~v~~-GY~~~~e~t~~~~~-----dG--w~~TG 498 (660)
T PLN02430 429 PDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPR--GEICVRGKCLFS-GYYKNPELTEEVMK-----DG--WFHTG 498 (660)
T ss_pred cccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCc--ceEEecCCCccc-cccCChHHhhhhhh-----cc--ceecc
Confidence 33333468999999999999986 333 44555544 999996654433 25678888888773 24 99999
Q ss_pred ceEEEecCceEEEEcccCCeeec-CceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCC--------
Q 004825 595 DVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS-------- 665 (728)
Q Consensus 595 Dl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~-------- 665 (728)
|+|++++||+|+++||+||+||+ +|++|+|++||++|. .||.|.+|+|++.. .+ +.++|+|++...
T Consensus 499 Dig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~-~~p~V~~~~V~G~~---~~-~~~~A~vv~~~~~~~~~~~~ 573 (660)
T PLN02430 499 DIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYG-QNPIVEDIWVYGDS---FK-SMLVAVVVPNEENTNKWAKD 573 (660)
T ss_pred ceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHh-cCCCeeEEEEEecC---Cc-ceEEEEEEcCHHHHHHHHHh
Confidence 99999999999999999999997 699999999999995 99999999999832 23 689999997641
Q ss_pred -CCCC-----CCHHHHHHHHHHHHH-----hhCCCCcccceEEECCC-C-----CCCCCCchhHHHHHHHHHh
Q 004825 666 -NYTP-----PDLNQLRMSFNSAVQ-----KKLNPLFKVSHVVPLPS-L-----PRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 666 -~~~~-----~~~~~l~~~l~~~l~-----~~Lp~~~~P~~i~~v~~-l-----P~t~~GKvdR~~L~~~~~~ 721 (728)
+... ....++++.|.+.+. +.|+.|.++..|.++++ + .+|+++|+.|+.+.+.+++
T Consensus 574 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02430 574 NGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQV 646 (660)
T ss_pred CCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHH
Confidence 1100 111234444433332 35999999998888764 3 5999999999999887765
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=536.33 Aligned_cols=478 Identities=21% Similarity=0.159 Sum_probs=382.8
Q ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEe
Q 004825 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQ 289 (728)
Q Consensus 210 ~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~ 289 (728)
.+||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++++++++++++
T Consensus 11 ~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~ 90 (502)
T PRK08276 11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS 90 (502)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cceecCCcccchHhhHhhcC--CcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCC
Q 004825 290 DLIIRGDKSIPLYRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGT 367 (728)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGS 367 (728)
+....... ...+... ...+.+.... ......|.+...... .......++.++++|||||
T Consensus 91 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~~~~~~~~~~a~i~~TSGt 151 (502)
T PRK08276 91 AALADTAA-----ELAAELPAGVPLLLVVAGP-------VPGFRSYEEALAAQP-------DTPIADETAGADMLYSSGT 151 (502)
T ss_pred cchhhHHH-----HHhhhccccccEEEEeCCC-------CCccccHHHHHhcCC-------CCCCCCCCcceEEEECCCC
Confidence 75432110 1111111 1222221110 012233444332111 1112345678999999999
Q ss_pred CCCCceEEecCcHHHHHH------HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHH
Q 004825 368 TGEPKAIPWTNATPFKAA------ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFV 441 (728)
Q Consensus 368 TG~PKgV~~sh~~l~~~~------~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i 441 (728)
||.||||+++|.++.... ......+....++++++..|++|..++...+.++..|+++++.+. .++..+++.+
T Consensus 152 TG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i 230 (502)
T PRK08276 152 TGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEK-FDAEEALALI 230 (502)
T ss_pred CCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCC-CCHHHHHHHH
Confidence 999999999988754322 222222334578899999999999998777789999999988764 5778999999
Q ss_pred HHhCCcEEEecHHHHHHHHcCCCC--CCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcc
Q 004825 442 QDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL 519 (728)
Q Consensus 442 ~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~ 519 (728)
+++++|++.++|+++..++..... ...+++++|.+++||++++.++.+++.+.++ ..+++.||+||++.++......
T Consensus 231 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~-~~~~~~yG~tE~~~~~~~~~~~ 309 (502)
T PRK08276 231 ERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG-PIIHEYYASSEGGGVTVITSED 309 (502)
T ss_pred HHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhC-cHhhhhcccccccceeEecCcc
Confidence 999999999999999999876432 3456789999999999999999999888764 7799999999998744433322
Q ss_pred cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEE
Q 004825 520 QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFER 599 (728)
Q Consensus 520 ~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~ 599 (728)
.....+++|+|+ +..++|+|+++++++.|.. |||++.+..... .|+.+++.+.+.|..+ +||+|||+|++
T Consensus 310 ~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~-gy~~~~~~~~~~~~~~------~~~~TGD~~~~ 379 (502)
T PRK08276 310 WLAHPGSVGKAV-LGEVRILDEDGNELPPGEI--GTVYFEMDGYPF-EYHNDPEKTAAARNPH------GWVTVGDVGYL 379 (502)
T ss_pred ccccCCCcceec-ccEEEEECCCCCCCcCCCc--eEEEEECCCccc-hhcCCHHHHHHHhcCC------CceeecceEEE
Confidence 223456899999 8899999999999999986 999997555443 3556677777777643 39999999999
Q ss_pred ecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHH
Q 004825 600 TSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSF 679 (728)
Q Consensus 600 ~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l 679 (728)
++||.+++.||.|+++|++|++|++.|||.+|+ .+|+|.+|+|++..++..+ +.+++++++.+ +. ....++.+.+
T Consensus 380 ~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~~--~~~~~~~~~i 454 (502)
T PRK08276 380 DEDGYLYLTDRKSDMIISGGVNIYPQEIENLLV-THPKVADVAVFGVPDEEMG-ERVKAVVQPAD-GA--DAGDALAAEL 454 (502)
T ss_pred cCCcCEEEeccCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeCCCcccC-ceEEEEEEECC-CC--CCChhhHHHH
Confidence 999999999999999999999999999999996 8999999999999887777 89999999876 43 2334556678
Q ss_pred HHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 680 NSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 680 ~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
++.++++|+.+|+|..++++++||+|+|||++|++|++.+..-.
T Consensus 455 ~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 498 (502)
T PRK08276 455 IAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEGR 498 (502)
T ss_pred HHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhhh
Confidence 88899999999999999999999999999999999999976533
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-61 Score=552.08 Aligned_cols=506 Identities=14% Similarity=0.106 Sum_probs=377.5
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...+.|.++++++|+++|+++.+. .+.++++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||++
T Consensus 40 ~l~~~l~~~a~~~p~~~a~~~~~~---~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~ 116 (614)
T PRK08180 40 RLTDRLVHWAQEAPDRVFLAERGA---DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMY 116 (614)
T ss_pred cHHHHHHHHHHHCCCCceeeeccC---CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 345668888899999999987532 12245899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCC-----HHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcC
Q 004825 258 AGYIVVSIADSFA-----SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDIS 332 (728)
Q Consensus 258 aG~~~vpl~p~~~-----~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 332 (728)
+|++++|++|.++ .+++.+++++++++++|+++.... ..............+...... .......
T Consensus 117 ~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~i~~~~~~------~~~~~~~ 186 (614)
T PRK08180 117 AGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAF----ARALAAVVPADVEVVAVRGAV------PGRAATP 186 (614)
T ss_pred cCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHH----HHHHhhhccCCceEEEecCCC------CCccccc
Confidence 9999999999998 799999999999999999753100 000000001111122221100 0011245
Q ss_pred HHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCC--CCCEEEecCCcchhh
Q 004825 333 WLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIR--KADIVAWPTNLGWMM 410 (728)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~--~~d~~l~~~~~~~~~ 410 (728)
|.++...... ...........++++|+|+|||||||.||||+++|+++...+......+++. .+++++++.|++|.+
T Consensus 187 ~~~~~~~~~~-~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~ 265 (614)
T PRK08180 187 FAALLATPPT-AAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTF 265 (614)
T ss_pred HHHHhccccc-cchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHh
Confidence 6655543211 0001111234679999999999999999999999999998887776666664 568999999999999
Q ss_pred hH-HHHHHHhhhCcEEEEeCCCCCc---chHHHHHHHhCCcEEEecHHHHHHHHcCCC----CCCCCCcCeeEEEeecCC
Q 004825 411 GP-WLVYASLLNGASIALYNGSPLG---SGFAKFVQDAKVTMLGVVPSIVRTWKSTNC----IDGYDWSSIRCFGSTGEA 482 (728)
Q Consensus 411 ~~-~~~~~~L~~G~~lvl~~~~~~~---~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~----~~~~~l~~lr~i~~gGe~ 482 (728)
+. ..++.+|+.|+++++.++.+++ ..+++.++++++|+++++|+++..|++... .....+++||.+++||++
T Consensus 266 g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~ 345 (614)
T PRK08180 266 GGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAA 345 (614)
T ss_pred hHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCC
Confidence 87 5678899999999998654443 357888999999999999999999876421 122346899999999999
Q ss_pred CCHHHHHHHHhc----cC-CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEE
Q 004825 483 SNVDEYLWLMGR----AL-YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELA 557 (728)
Q Consensus 483 l~~~~~~~~~~~----~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~ 557 (728)
+++++.+++.+. ++ ++++++.||+||++..++.... .....+++|+|++|++++|+|++ . .|||+
T Consensus 346 l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~d~~-------~--~GEi~ 415 (614)
T PRK08180 346 LSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTG-PLSRAGNIGLPAPGCEVKLVPVG-------G--KLEVR 415 (614)
T ss_pred CCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEeccc-ccCCCCcccCccCCcEEEEecCC-------C--CcEEE
Confidence 999998888764 22 3679999999999865443332 23456799999999999999863 2 39999
Q ss_pred EeccccCCCccccCccccccccccCCCCCCceeEEeCceEEE----ecCceEEEEcccCCeeec-Cceeec--HHHHHHH
Q 004825 558 LSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFER----TSGGYYRAHGRADDTMNL-GGIKVS--SVEIERI 630 (728)
Q Consensus 558 v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~----~~dG~l~~~GR~d~~iki-~G~ri~--~~eIE~~ 630 (728)
|.+..+.. .|+++++.|++.|..+ | ||+|||+|++ ++||+++|+||+||+||+ +|++|+ +.|||.+
T Consensus 416 vrg~~v~~-GY~~~p~~t~~~~~~d----g--w~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~ 488 (614)
T PRK08180 416 VKGPNVTP-GYWRAPELTAEAFDEE----G--YYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAV 488 (614)
T ss_pred EecCccch-hhcCChhHhHhhcccC----C--ceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHH
Confidence 96654432 2466778888777532 3 9999999999 468999999999999985 798776 7889998
Q ss_pred HhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCC--------------CCCCHHHHHHHHHHHHHhhC----CCCcc
Q 004825 631 CNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNY--------------TPPDLNQLRMSFNSAVQKKL----NPLFK 692 (728)
Q Consensus 631 l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~--------------~~~~~~~l~~~l~~~l~~~L----p~~~~ 692 (728)
+. .||.|.+|+|++.++ +.+.|+|++.+ +. +..+.+++++++++.|.+.- +.+.+
T Consensus 489 l~-~~p~V~~a~V~g~~~-----~~~~a~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 561 (614)
T PRK08180 489 SA-GAPLVQDVVITGHDR-----DEIGLLVFPNL-DACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTR 561 (614)
T ss_pred hh-cCchhheEEEEcCCC-----CceEEEEEcCH-HHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhh
Confidence 85 899999999999765 45778888765 21 00234556666555544332 22338
Q ss_pred cceEEECCCCCCCCCC------chhHHHHHHHHHh
Q 004825 693 VSHVVPLPSLPRTATN------KVMRRVLRKQLAQ 721 (728)
Q Consensus 693 P~~i~~v~~lP~t~~G------KvdR~~L~~~~~~ 721 (728)
|..+++++++|++++| |+.|+++.+.+++
T Consensus 562 p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~ 596 (614)
T PRK08180 562 VARALLLDEPPSLDAGEITDKGYINQRAVLARRAA 596 (614)
T ss_pred eeEEEEecCCCCCccCccCccccccHHHHHHHhHH
Confidence 9999999999977655 7778888877765
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=587.83 Aligned_cols=494 Identities=15% Similarity=0.147 Sum_probs=383.0
Q ss_pred hhcccccCCCC-CCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 004825 181 NCLSVNSKRSL-DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (728)
Q Consensus 181 ~~l~~~~~~~p-d~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG 259 (728)
+.+.++++++| +++|+.+.+. +++||+||+++++++|++|++ |+++||+|+|+++|++++++++|||+++|
T Consensus 635 ~~l~~~~~~~~~~~~ai~~~~~-------~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G 706 (1140)
T PRK06814 635 EALIEAAKIHGFKKLAVEDPVN-------GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAG 706 (1140)
T ss_pred HHHHHHHHHcCCCCeEeECCCC-------CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCC
Confidence 44555666665 6777776332 289999999999999999975 99999999999999999999999999999
Q ss_pred cEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC--CcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 260 ~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
++++|+||.++.+++.+++++++++++|+++......+.. ...+... ..++.++.... ....+..+.
T Consensus 707 ~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~ 775 (1140)
T PRK06814 707 RVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLG---PLIEALEFGIRIIYLEDVRA--------QIGLADKIK 775 (1140)
T ss_pred CEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcch---hHHHHhccCceEEEehHhhc--------cCChHHHHH
Confidence 9999999999999999999999999999987543211100 1111111 12222221100 001111111
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HHHH
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVY 416 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~ 416 (728)
..... ...........+++++||+|||||||.||||+++|+++.+.+......++++++|++++..|+.|..+. ..++
T Consensus 776 ~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~ 854 (1140)
T PRK06814 776 GLLAG-RFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLV 854 (1140)
T ss_pred HHhhc-cCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHH
Confidence 11110 000111113567999999999999999999999999999988888888899999999999999999998 6788
Q ss_pred HHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 417 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 417 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
.++..|+++++.+...+...+.+.++++++|++..+|++++.+.+.. ...+++++|.+++|||++++++.+++.+.+
T Consensus 855 ~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~- 931 (1140)
T PRK06814 855 LPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF- 931 (1140)
T ss_pred HHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh-
Confidence 99999999999876555567889999999999999999999987653 345678999999999999999998888776
Q ss_pred CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccc
Q 004825 497 YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYD 576 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~ 576 (728)
+++++|.||+||++..++.... ......++|+|++|+++++.+..+ .|+. |||++.+.....+ |++++. .
T Consensus 932 ~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~g~~~~~~~~~~----~~~~--Gel~v~g~~~~~g--Y~~~~~-~ 1001 (1140)
T PRK06814 932 GIRILEGYGVTETAPVIALNTP-MHNKAGTVGRLLPGIEYRLEPVPG----IDEG--GRLFVRGPNVMLG--YLRAEN-P 1001 (1140)
T ss_pred CCcEEeccccccccceEEecCC-CCCCCCcCCccCCCCeEEEeecCC----CCCc--eEEEEeCCCcchh--hcCCCC-C
Confidence 4889999999999875544332 224467899999999999987643 2454 9999976654332 333221 1
Q ss_pred cccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEE
Q 004825 577 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQL 656 (728)
Q Consensus 577 ~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l 656 (728)
..+.. . +++||+|||+|++|+||+++++||.||+||++|+||+|.|||++|. .||.|.+++|++++++..| +.+
T Consensus 1002 ~~~~~--~--~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~~~~~~~g-~~~ 1075 (1140)
T PRK06814 1002 GVLEP--P--ADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAA-ELWPDALHAAVSIPDARKG-ERI 1075 (1140)
T ss_pred Ccccc--C--CCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHH-hcCCcccEEEEEcccCCCC-ceE
Confidence 11211 1 2349999999999999999999999999999999999999999995 8999999999999988777 777
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 657 TIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 657 ~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
++++. .. ..+.+++++ ++++ .++.|++|..++.+++||+|++||+||++|+++.++.
T Consensus 1076 ~~~~~-~~----~~~~~~l~~----~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 1133 (1140)
T PRK06814 1076 ILLTT-AS----DATRAAFLA----HAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEA 1133 (1140)
T ss_pred EEEEc-CC----CcCHHHHHH----HHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence 77654 22 244555555 4554 5999999999999999999999999999999998874
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=568.11 Aligned_cols=553 Identities=19% Similarity=0.195 Sum_probs=440.8
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC--CCCccCCh----
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD--PPAWIPDP---- 88 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~--~~~~~~~~---- 88 (728)
..+++.......+|.++++++.+.... +||++||+.+++.+...|+.+ +|+ |+++|++... .....+..
T Consensus 67 ~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~h~~~p~~~l~~~~~~~~~~~-~~l--~~~~~~~~~~~~~~~~~~~~~~~~ 143 (642)
T COG1020 67 TLPLRLDISGRVTFAELLARLRELALGALEHQDLPGEQLVERLGRERSLS-EPL--FDVVFVLQNGPTAGLKLPGLRVEE 143 (642)
T ss_pred eeeeeeccCCCCCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHhhhccCC-CCc--eeeEEEecCccccccccccccccc
Confidence 356777777888999999999988877 999999999999999999988 888 8888888322 11001111
Q ss_pred ----hhhhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCC
Q 004825 89 ----EAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHL 163 (728)
Q Consensus 89 ----~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (728)
....++|+.+.+.+. ++...+ |.+ ++|++.+++++..||..++..+. ..+...+...++..+.+
T Consensus 144 ~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~l~ll~~~e 212 (642)
T COG1020 144 LGIETPAAKLDLALAVVEG--GLRLSFDYAR-----ELFDAETIERELRHFLQLLAALA----DAPRTSLSALPLLLPSE 212 (642)
T ss_pred ccccCcccccceEEEEEeC--ceEEEEEeec-----ccCCHHHHHHHHHHHHHHHHHHH----hCcccCcccCCCCCHHH
Confidence 234566776665554 566677 988 99999999999999999999873 33333444444333332
Q ss_pred CCCCCCCCCCCcc----hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004825 164 SNPGGQWLPGAFV----NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIA 239 (728)
Q Consensus 164 ~~~~~~w~~~~~~----~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Va 239 (728)
. ..|+..... ...+..|.+++.+.|+++|+.+.+. ++||+||+.+++++|+.|.+.|++++++|+
T Consensus 213 ~---~~~~~~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~~~--------~lty~el~~~a~~la~~l~~~g~~~~~~V~ 281 (642)
T COG1020 213 R---EVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQ--------QLTYAELDARANRLARLLISLGVGPGETVA 281 (642)
T ss_pred H---hhccccccCCCccchHHHHHHHHHHhCCCceeEecCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCeEE
Confidence 3 335522221 2356678889999999999999866 999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCC
Q 004825 240 IDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKG 319 (728)
Q Consensus 240 i~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 319 (728)
++++++++++++++|++|+|++|+|+||.+|.+|+.+++++++++++++..........++. +.
T Consensus 282 i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~--- 345 (642)
T COG1020 282 ILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG-------------LA--- 345 (642)
T ss_pred EEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc-------------cc---
Confidence 99999999999999999999999999999999999999999999999998543211101100 00
Q ss_pred CCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCE
Q 004825 320 SSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADI 399 (728)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~ 399 (728)
.+...... ...........+++++|++|||||||+||||+++|+++++.+.+....+.++.+|+
T Consensus 346 -------------~~~~~~~~---~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~ 409 (642)
T COG1020 346 -------------LDDALSEI---PDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDR 409 (642)
T ss_pred -------------cccccccC---CccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccE
Confidence 00000000 00000123345689999999999999999999999999999999988899999999
Q ss_pred EEecCCcchhhhHHHHHHHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCC--CCCCcCeeE
Q 004825 400 VAWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID--GYDWSSIRC 475 (728)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~l~~lr~ 475 (728)
++..++++||.+.+++|.++..|+++++.+.. .++..+.+.+.++++|++..+|+++..++...... ....+.+|.
T Consensus 410 ~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~ 489 (642)
T COG1020 410 VLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQ 489 (642)
T ss_pred EeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccE
Confidence 99999999999999999999999999998754 36678999999999999999999999998762211 122335999
Q ss_pred EEeecCCCCHHHHHHHHhccC-CCCeEecccccccccccccCCcccccc-cccccCCCCCceEEEEcCCCCccCCCCCce
Q 004825 476 FGSTGEASNVDEYLWLMGRAL-YKPVIEYCGGTEIGGGFITGSLLQAQS-LAAFSTPAMGCKLFILGNDGCPIPQNVPGM 553 (728)
Q Consensus 476 i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~-~~~iG~p~~~~~v~i~d~~g~~vp~g~~gi 553 (728)
+++|||.++..+...+....+ ...+.|.||+||+++............ ..++|+|++|++++|+|+.++++|.|+.
T Consensus 490 ~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~-- 567 (642)
T COG1020 490 LLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVP-- 567 (642)
T ss_pred EEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCC--
Confidence 999999999999887776554 468999999999776544433322111 5799999999999999999999999998
Q ss_pred eEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhc
Q 004825 554 GELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 633 (728)
Q Consensus 554 GEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~ 633 (728)
||++|++..+..+ |+++++.|+++|..+ ++|+|||++|+.+||.++++||.|+|||++|+||+++|||.++.
T Consensus 568 gel~i~g~~~a~g-y~~~p~lt~~~f~~~------~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~- 639 (642)
T COG1020 568 GELYIAGLGLALG-YLNRPDLTAERFIAL------RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALA- 639 (642)
T ss_pred eeeEECCcchhhh-hcCChhhhHHHhhhc------cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHh-
Confidence 9999988887765 567899999999986 49999999999999999999999999999999999999999995
Q ss_pred CCC
Q 004825 634 VDS 636 (728)
Q Consensus 634 ~~p 636 (728)
.+|
T Consensus 640 ~~~ 642 (642)
T COG1020 640 EQP 642 (642)
T ss_pred cCC
Confidence 664
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=530.84 Aligned_cols=447 Identities=19% Similarity=0.162 Sum_probs=367.5
Q ss_pred cccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEE
Q 004825 183 LSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIV 262 (728)
Q Consensus 183 l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~ 262 (728)
...+++++|+++|+++.+. .+||+||.++++++|++|.+.|+++|++|+++++++++++++++||+++|+++
T Consensus 9 ~~~~a~~~~~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~ 80 (458)
T PRK09029 9 WRHWAQVRPQAIALRLNDE--------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARV 80 (458)
T ss_pred HHHHHHhCCCceeeecCCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEE
Confidence 3445678999999998766 99999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhc
Q 004825 263 VSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRK 342 (728)
Q Consensus 263 vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (728)
+|+++..+.+++..++++++++++++++.... .. . . .. ..+. . .
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~--~----~-------~~-------------~~~~---~--~- 124 (458)
T PRK09029 81 LPLNPQLPQPLLEELLPSLTLDFALVLEGENT----FS--A----L-------TS-------------LHLQ---L--V- 124 (458)
T ss_pred eecCCCCCHHHHHHHHHhcCCCEEEEcCcccc----hh--h----c-------cc-------------cccc---c--c-
Confidence 99999999999999999999999999875311 00 0 0 00 0000 0 0
Q ss_pred cccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhC
Q 004825 343 LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNG 422 (728)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (728)
.........++++++++|||||||.||||+++|++++..+......+++.++|+++...|++|.+++..++.+|..|
T Consensus 125 ---~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G 201 (458)
T PRK09029 125 ---EGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAG 201 (458)
T ss_pred ---cccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCC
Confidence 00112334678999999999999999999999999999888887888999999999999999999987778899999
Q ss_pred cEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEe
Q 004825 423 ASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIE 502 (728)
Q Consensus 423 ~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (728)
+++++.+. ..+++.+ .++|.+..+|+++..++..... ..++|.+++||+++++.+.+++.+ + +.++++
T Consensus 202 ~~v~~~~~----~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~-~-g~~~~~ 269 (458)
T PRK09029 202 ATLVVRDK----QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQ-Q-GIRCWC 269 (458)
T ss_pred ceEEeCCh----HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHH-c-CCcEec
Confidence 99998764 4566777 4899999999999998865432 347999999999999999888765 3 588999
Q ss_pred cccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccC
Q 004825 503 YCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGM 582 (728)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~ 582 (728)
.||+||++...+.... ....++|+|+++++++|+| |||+|.+.....+ |+++++.+...
T Consensus 270 ~YG~tE~~~~~~~~~~---~~~~~~G~~~~~~~~~i~~-------------gel~v~g~~~~~g-Y~~~~~~~~~~---- 328 (458)
T PRK09029 270 GYGLTEMASTVCAKRA---DGLAGVGSPLPGREVKLVD-------------GEIWLRGASLALG-YWRQGQLVPLV---- 328 (458)
T ss_pred cccccccCcceeccCC---CCCCCCCCCCCCCEEEEeC-------------CEEEEecCceeee-eecCccccccc----
Confidence 9999999865443222 2235699999999999975 7999966554332 23444443211
Q ss_pred CCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEe
Q 004825 583 PSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVF 662 (728)
Q Consensus 583 p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~ 662 (728)
.+.+||+|||+|+++ ||.++++||+||+||++|++|+|.|||++|. .||+|.+|+|++.+++..+ +.++++|+.
T Consensus 329 ---~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~v~~ 402 (458)
T PRK09029 329 ---NDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVIN-QHPLVQQVFVVPVADAEFG-QRPVAVVES 402 (458)
T ss_pred ---cCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHh-cCCCcceEEEEccCCcccC-ceEEEEEEc
Confidence 133499999999999 9999999999999999999999999999995 8999999999999988777 789999987
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 663 KDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 663 ~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
.. ..+.. .|+++++++||+|++|..++.++++|+|.+||++|+.|++++++..
T Consensus 403 ~~----~~~~~----~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~ 455 (458)
T PRK09029 403 DS----EAAVV----NLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQL 455 (458)
T ss_pred Cc----ccCHH----HHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhcc
Confidence 64 23444 4555688899999999999999999999999999999999998643
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-60 Score=536.59 Aligned_cols=510 Identities=19% Similarity=0.184 Sum_probs=386.9
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
....|.+.++.+|+++|+.+.+. .+||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 20 ~~~~~~~~~~~~~~~~a~~~~~~--------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~ 91 (545)
T PRK08162 20 PLSFLERAAEVYPDRPAVIHGDR--------RRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMA 91 (545)
T ss_pred HHHHHHHHHHHCCCCeEEEECCe--------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHh
Confidence 33557778889999999998766 8999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC-CcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA-PLAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
|++++|++|.++.+++..+++++++++++++...... + .+...... ...+++.............+..++.++.
T Consensus 92 G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (545)
T PRK08162 92 GAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEV---A--REALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFL 166 (545)
T ss_pred CcEEeccccccChHHHHHHHHhCCCeEEEEccchhhH---H--HHHHhhCCCCceEEEecCccccccCCCcccccHHHHh
Confidence 9999999999999999999999999999998754211 0 01111111 1233333221111000011233455554
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHH
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 417 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (728)
..... ..........+++++|+|||||||.||||+++|+++..........+++..++++++..|+.|..+....+.
T Consensus 167 ~~~~~---~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~ 243 (545)
T PRK08162 167 ASGDP---DFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWT 243 (545)
T ss_pred ccCCc---cccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHH
Confidence 32211 001111223467999999999999999999999988766665566678888999999999999988754434
Q ss_pred HhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCC
Q 004825 418 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 497 (728)
Q Consensus 418 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~ 497 (728)
..+.|++.++.. ..++..+++.|+++++|++.++|++++.|++........+.+++.++++|+.++++..+++.+ . +
T Consensus 244 ~~~~~g~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-~ 320 (545)
T PRK08162 244 VAARAGTNVCLR-KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEE-I-G 320 (545)
T ss_pred HHHHccEEEEeC-CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHH-h-C
Confidence 444566555554 367889999999999999999999999998765443334556677789999999998888765 3 5
Q ss_pred CCeEecccccccccccccCCccc----------ccccccccCCCC-CceEEEEcC-CCCccCCCCCceeEEEEeccccCC
Q 004825 498 KPVIEYCGGTEIGGGFITGSLLQ----------AQSLAAFSTPAM-GCKLFILGN-DGCPIPQNVPGMGELALSPLIFGA 565 (728)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~-~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~ 565 (728)
+++++.||+||+++.++...... .....+.|.+.+ +..++|+|+ .+++++.+...+|||+|.+..+..
T Consensus 321 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~ 400 (545)
T PRK08162 321 FDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMK 400 (545)
T ss_pred CceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchh
Confidence 88999999999864433221100 011235566654 346889995 688887642125999997665433
Q ss_pred CccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEe
Q 004825 566 SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIG 645 (728)
Q Consensus 566 ~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~ 645 (728)
.|+++++.+...|.. | ||+|||+|++++||+++++||.|++||++|++|+|.|||++|. .||+|.+++|++
T Consensus 401 -gY~~~~~~~~~~~~~-----g--~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~ 471 (545)
T PRK08162 401 -GYLKNPKATEEAFAG-----G--WFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLY-RHPAVLVAAVVA 471 (545)
T ss_pred -hhcCChhhhHHHhhC-----C--CcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHH-hCCcccEEEEEe
Confidence 346677777777742 3 9999999999999999999999999999999999999999995 999999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhcc
Q 004825 646 VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724 (728)
Q Consensus 646 ~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 724 (728)
.+++..+ +.+++++++.+ +. ..+.. .+++++++.||.|++|..+++ ++||+|+|||++|+.|+++++++..
T Consensus 472 ~~~~~~~-~~~~~~v~~~~-~~-~~~~~----~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~l~~ 542 (545)
T PRK08162 472 KPDPKWG-EVPCAFVELKD-GA-SATEE----EIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKSLKA 542 (545)
T ss_pred eeccccC-ceEEEEEEeCC-CC-CCCHH----HHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhhhhh
Confidence 8887666 78999998876 43 23444 455568889999999998875 6899999999999999999988654
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=519.92 Aligned_cols=407 Identities=17% Similarity=0.151 Sum_probs=347.2
Q ss_pred EEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHH
Q 004825 195 VIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEI 274 (728)
Q Consensus 195 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l 274 (728)
|+++.++ ++||+||.++++++|+.|. .|+++|++|+|+++|++++++++||++++|++++|++++.+.+++
T Consensus 1 ~~~~~~~--------~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~ 71 (414)
T PRK08308 1 MLIVNDE--------EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAA 71 (414)
T ss_pred CeEecCc--------eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHH
Confidence 4666666 9999999999999999985 689999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccccccCC
Q 004825 275 SARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQP 354 (728)
Q Consensus 275 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (728)
..++++++++++++++.... +. ......
T Consensus 72 ~~~~~~~~~~~~i~~~~~~~--------------------~~--------------------------------~~~~~~ 99 (414)
T PRK08308 72 IRMAKRAGCHGLLYGESDFT--------------------KL--------------------------------EAVNYL 99 (414)
T ss_pred HHHHHhCCCCEEEecCcccc--------------------cc--------------------------------cCCCCC
Confidence 99999999999998762100 00 001124
Q ss_pred CCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCC
Q 004825 355 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSPL 433 (728)
Q Consensus 355 ~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~ 433 (728)
+++++|++|||||||.||||+++|+++.+.+.+....+++..+|+++...|++|.+++ ..++.+|..|+++++.+. .+
T Consensus 100 ~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~-~~ 178 (414)
T PRK08308 100 AEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITN-KN 178 (414)
T ss_pred CCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCC-CC
Confidence 5789999999999999999999999999988888888889999999999999999987 578999999999999864 56
Q ss_pred cchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEeccccccccccc
Q 004825 434 GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGF 513 (728)
Q Consensus 434 ~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 513 (728)
+..+++.++++++|++.++|+++..+.+.... ..+++.+++||+++++++.+++.+. ..+++|.||+||+++..
T Consensus 179 ~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~ 252 (414)
T PRK08308 179 PKFALNILRNTPQHILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVS 252 (414)
T ss_pred HHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCee
Confidence 78899999999999999999999999875322 2368899999999999998888765 36899999999998543
Q ss_pred ccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEe
Q 004825 514 ITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRH 593 (728)
Q Consensus 514 ~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~T 593 (728)
.... .....++|+|++++++++.++. |.+ |||++... .+||+|
T Consensus 253 ~~~~---~~~~~~~G~p~~~~~~~~~~~~------~~~--gel~v~~~--------------------------~~~~~T 295 (414)
T PRK08308 253 ICPD---MKSHLDLGNPLPHVSVSAGSDE------NAP--EEIVVKMG--------------------------DKEIFT 295 (414)
T ss_pred ecCC---CCCCCccCccCCCeEEEEecCC------CCC--ceEEEEcC--------------------------CceEEC
Confidence 3211 1245689999999999998643 444 99998421 139999
Q ss_pred CceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHH
Q 004825 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLN 673 (728)
Q Consensus 594 GDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~ 673 (728)
||+|++++||+++++||.|++||++|+||+|.|||++|. .+|+|.+|+|++.+++..+ +.++++++... ..+..
T Consensus 296 GDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~-~~~~v~~a~v~~~~~~~~~-~~~~~~v~~~~----~~~~~ 369 (414)
T PRK08308 296 KDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVML-RLPGVQEAVVYRGKDPVAG-ERVKAKVISHE----EIDPV 369 (414)
T ss_pred CceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCC----CCCHH
Confidence 999999999999999999999999999999999999995 8999999999999888777 78889988765 24555
Q ss_pred HHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHH
Q 004825 674 QLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716 (728)
Q Consensus 674 ~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 716 (728)
++++ +++++|+.|++|..++++++||+|++||++|++|+
T Consensus 370 ~l~~----~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 370 QLRE----WCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred HHHH----HHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 5544 67788999999999999999999999999999543
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-59 Score=535.12 Aligned_cols=501 Identities=18% Similarity=0.179 Sum_probs=365.1
Q ss_pred hhcccccCCCCCCeEEEEeccCC-CCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 004825 181 NCLSVNSKRSLDDIVIRWCDEGD-GGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (728)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG 259 (728)
..|.+++..+|+++|+++.+..+ ..+..+++||+||.++++++|++|.+.| ++||+|+|+++|++++++++|||+++|
T Consensus 5 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~~G 83 (578)
T PRK05850 5 SLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQAG 83 (578)
T ss_pred HHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHHHcC
Confidence 45777888999999999754210 1112358999999999999999999999 689999999999999999999999999
Q ss_pred cEEEecCC---CCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhc----CCcEEEEcCCCCCcccccCCCCcC
Q 004825 260 YIVVSIAD---SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQ----APLAIVIPAKGSSFSMKLRDGDIS 332 (728)
Q Consensus 260 ~~~vpl~p---~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~ 332 (728)
++++|+++ ..+.+++.++|++++++++++++....... ...... ...++.++. .
T Consensus 84 ~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------------~- 144 (578)
T PRK05850 84 LIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVT-----EYVAPQPGQSAPPVIEVDL-------------L- 144 (578)
T ss_pred ceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHH-----HHHhhcccccccceEeecc-------------c-
Confidence 99999997 557899999999999999999875431100 110000 001111110 0
Q ss_pred HHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh-cC-----CCCCCEEEecCCc
Q 004825 333 WLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH-MD-----IRKADIVAWPTNL 406 (728)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~-~~-----~~~~d~~l~~~~~ 406 (728)
++. .. .........+++++||+|||||||.||||+++|+++++.+.+.... +. ...++++++..|+
T Consensus 145 --~~~---~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl 216 (578)
T PRK05850 145 --DLD---SP---RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPF 216 (578)
T ss_pred --ccc---cC---CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCC
Confidence 000 00 0001123456899999999999999999999999998876655433 22 3568899999999
Q ss_pred chhhhH-HHHHHHhhhCcEEEEeCCC---CCcchHHHHHHHhCCcEEEecHHH-HHHHHcCC---CCCCCCCcCeeEEEe
Q 004825 407 GWMMGP-WLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSI-VRTWKSTN---CIDGYDWSSIRCFGS 478 (728)
Q Consensus 407 ~~~~~~-~~~~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~-l~~l~~~~---~~~~~~l~~lr~i~~ 478 (728)
+|+.++ ..++.+++.|+++++.+.. .++..+++++++++++++ .+|++ +..+.... .....+++++|.+++
T Consensus 217 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 295 (578)
T PRK05850 217 YHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIIS 295 (578)
T ss_pred CCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEE
Confidence 999998 5689999999999998642 257789999999999866 45554 44333211 112345788999999
Q ss_pred ecCCCCHHHHHHHHhccC-----CCCeEecccccccccccccCCcccc------------------------cccccccC
Q 004825 479 TGEASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQA------------------------QSLAAFST 529 (728)
Q Consensus 479 gGe~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~------------------------~~~~~iG~ 529 (728)
||+++++++.+++.+.++ +..+++.||+||++..+........ ....++|.
T Consensus 296 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~ 375 (578)
T PRK05850 296 GSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGS 375 (578)
T ss_pred CcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccC
Confidence 999999999888877653 3468999999998754333211100 01124556
Q ss_pred CCCCceEEEEcC-CCCccCCCCCceeEEEEeccccCCCccccCcccccccccc---CCC--CCCceeEEeCceEEEecCc
Q 004825 530 PAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG---MPS--RNGQILRRHGDVFERTSGG 603 (728)
Q Consensus 530 p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~---~p~--~~g~~~y~TGDl~~~~~dG 603 (728)
|. +.+++|+|+ +++++|.|+. |||+|.+..+..+ |+++++.+++.|.. +|. ....+||+|||+|+++ ||
T Consensus 376 p~-~~~~~ivd~~~~~~~~~g~~--Gel~v~g~~~~~g-Y~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G 450 (578)
T PRK05850 376 PR-SPTVRIVDPDTCIECPAGTV--GEIWVHGDNVAAG-YWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EG 450 (578)
T ss_pred CC-CCEEEEEcCCCCcCCCCCCE--EEEEEecCccccc-ccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CC
Confidence 64 678999995 4789999986 9999977655432 46788888888853 221 1123599999999998 99
Q ss_pred eEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHH--HHHHHHH
Q 004825 604 YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQ--LRMSFNS 681 (728)
Q Consensus 604 ~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~--l~~~l~~ 681 (728)
+++++||.||+||++|++|+|.|||++|. .||.+ +++|++++++ .+ +.++++|++++ +. ..+.++ ....+++
T Consensus 451 ~l~~~GR~~d~i~~~G~~i~p~eIE~~l~-~~~~~-~~~v~~v~~~-~~-~~~~a~v~~~~-~~-~~~~~~~~~~~~l~~ 524 (578)
T PRK05850 451 ELFIVGRIKDLLIVDGRNHYPDDIEATIQ-EITGG-RVAAISVPDD-GT-EKLVAIIELKK-RG-DSDEEAMDRLRTVKR 524 (578)
T ss_pred EEEEEcccccEEEECCeecCHHHHHHHHH-HhcCC-cEEEEEecCC-Cc-eEEEEEEEecc-cc-CcchhhhhhHHHHHH
Confidence 99999999999999999999999999996 89985 5788888876 45 78999999876 33 122221 2234444
Q ss_pred HHHhhCCC--CcccceEEEC--CCCCCCCCCchhHHHHHHHHHh
Q 004825 682 AVQKKLNP--LFKVSHVVPL--PSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 682 ~l~~~Lp~--~~~P~~i~~v--~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
++...++. ++.|..++++ +.||+|++||++|++|++.+.+
T Consensus 525 ~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~ 568 (578)
T PRK05850 525 EVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQ 568 (578)
T ss_pred HHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHc
Confidence 44443332 2456666666 4899999999999999999876
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-59 Score=514.49 Aligned_cols=435 Identities=20% Similarity=0.227 Sum_probs=354.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecc
Q 004825 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 212 TY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred eecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCC
Q 004825 292 IIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEP 371 (728)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~P 371 (728)
.... .+. ...+.++..... ...........+++++++|||||||.|
T Consensus 81 ~~~~--~~~-----------------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~P 126 (436)
T TIGR01923 81 LEEK--DFQ-----------------------------ADSLDRIEAAGR---YETSLSASFNMDQIATLMFTSGTTGKP 126 (436)
T ss_pred cccc--cee-----------------------------ecchHhhhhccc---ccccccccCCcCceEEEEeCCCCCCCC
Confidence 3110 000 000111111000 001112334568999999999999999
Q ss_pred ceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEe
Q 004825 372 KAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGV 451 (728)
Q Consensus 372 KgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~ 451 (728)
|+|+++|+++...+.+....++++++|++++..|+.|..++..++.++..|+++++.++. ..+++.|+++++|++.+
T Consensus 127 K~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~~~ 203 (436)
T TIGR01923 127 KAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHISL 203 (436)
T ss_pred cEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEEEe
Confidence 999999999999888888889999999999999999999988889999999999998643 38999999999999999
Q ss_pred cHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCC
Q 004825 452 VPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA 531 (728)
Q Consensus 452 ~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~ 531 (728)
+|+++..|.+.... .+++|.+++|||++++++.+++.. . +++++|.||+||++..++...........++|+|+
T Consensus 204 ~P~~l~~l~~~~~~----~~~l~~~~~~G~~~~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~ 277 (436)
T TIGR01923 204 VPTQLNRLLDEGGH----NENLRKILLGGSAIPAPLIEEAQQ-Y-GLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPL 277 (436)
T ss_pred HHHHHHHHHhCcCC----CCceEEEEECCCCCCHHHHHHHHH-h-CCceeeEecCCccchhccCcCccccccccCCCccC
Confidence 99999999876432 268999999999999999887765 3 58999999999998765544332222223589999
Q ss_pred CCceEEE-EcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcc
Q 004825 532 MGCKLFI-LGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGR 610 (728)
Q Consensus 532 ~~~~v~i-~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR 610 (728)
++++++| .|+.+ + .|||++.+.....+ |+.+++.+...+. .+||+|||+|++++||.+++.||
T Consensus 278 ~~~~~~i~~~~~~------~--~Gel~v~~~~~~~g-y~~~~~~~~~~~~-------~~~~~TGD~~~~~~dg~~~~~GR 341 (436)
T TIGR01923 278 AGREIKIKVDNKE------G--HGEIMVKGANLMKG-YLYQGELTPAFEQ-------QGWFNTGDIGELDGEGFLYVLGR 341 (436)
T ss_pred CCcEEEEEeCCCC------C--ceEEEEECCccchh-hCCChhhhhhhhc-------CCCeeccceEEEcCCCCEEEecc
Confidence 9999999 44332 3 39999976654432 2334444443332 23999999999999999999999
Q ss_pred cCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 004825 611 ADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPL 690 (728)
Q Consensus 611 ~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~ 690 (728)
.||+||++|++|++.+||++|. .+|.|.+++|++.++...+ ..++++++... + .+..++. +++++.|+.|
T Consensus 342 ~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~-~---~~~~~l~----~~l~~~l~~~ 411 (436)
T TIGR01923 342 RDDLIISGGENIYPEEIETVLY-QHPGIQEAVVVPKPDAEWG-QVPVAYIVSES-D---ISQAKLI----AYLTEKLAKY 411 (436)
T ss_pred ccCeEEeCCEeeCHHHHHHHHH-hCCCeeEEEEeCCcchhcC-CeeEEEEEECC-C---CCHHHHH----HHHHHhhhCC
Confidence 9999999999999999999995 8999999999988776655 78888888765 2 3444444 4677889999
Q ss_pred cccceEEECCCCCCCCCCchhHHHH
Q 004825 691 FKVSHVVPLPSLPRTATNKVMRRVL 715 (728)
Q Consensus 691 ~~P~~i~~v~~lP~t~~GKvdR~~L 715 (728)
++|..++++++||+|++||++|++|
T Consensus 412 ~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 412 KVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred CCCeEEEEecCCCCCCCCceecccC
Confidence 9999999999999999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=538.20 Aligned_cols=516 Identities=16% Similarity=0.145 Sum_probs=376.3
Q ss_pred CCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Q 004825 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSV 249 (728)
Q Consensus 170 w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~v 249 (728)
|..........++|.++++++||++|+++.+.. .+.++++||+||.++++++|++|++.|+++||+|+|+++|+++++
T Consensus 42 ~~~~~~~~~l~~~l~~~a~~~pd~~a~~~~~~~--~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~ 119 (624)
T PRK12582 42 HPLGPYPRSIPHLLAKWAAEAPDRPWLAQREPG--HGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHA 119 (624)
T ss_pred CCCCCcccCHHHHHHHHHHHCCCchheecccCC--CCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHH
Confidence 333333444667788889999999999875421 233569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcEEEecCCCCCH-----HHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCccc
Q 004825 250 VIYLAIVLAGYIVVSIADSFAS-----LEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSM 324 (728)
Q Consensus 250 va~lA~lkaG~~~vpl~p~~~~-----~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 324 (728)
+++|||+++|++++|++|.++. +++.+++++++++++|+++.... .............++.+.....
T Consensus 120 ~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~---- 191 (624)
T PRK12582 120 LMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPF----ARALAALDLLDVTVVHVTGPGE---- 191 (624)
T ss_pred HHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHH----HHHHHhhhhcCceEEEEcCCCc----
Confidence 9999999999999999999985 89999999999999999763110 0000111111122333321110
Q ss_pred ccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCC---CCEEE
Q 004825 325 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRK---ADIVA 401 (728)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~---~d~~l 401 (728)
......+.++...... ...........++++++|+|||||||.||||+++|++++..+......+.... .++++
T Consensus 192 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l 268 (624)
T PRK12582 192 --GIASIAFADLAATPPT-AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSL 268 (624)
T ss_pred --ccccccHHHHhhcCCc-chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEE
Confidence 0112345554432211 00001112346789999999999999999999999999887766655455444 57999
Q ss_pred ecCCcchhhhH-HHHHHHhhhCcEEEEeCCCCCcc---hHHHHHHHhCCcEEEecHHHHHHHHcCCCCC----CCCCcCe
Q 004825 402 WPTNLGWMMGP-WLVYASLLNGASIALYNGSPLGS---GFAKFVQDAKVTMLGVVPSIVRTWKSTNCID----GYDWSSI 473 (728)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~---~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~----~~~l~~l 473 (728)
.+.|++|.++. ..++.+|..|+++++.++..++. .+++.++++++|++.++|+++..|++..... ...+++|
T Consensus 269 ~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~sl 348 (624)
T PRK12582 269 DWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNL 348 (624)
T ss_pred EechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhhe
Confidence 99999999987 45778999999999976544443 4567788999999999999999887542111 1246799
Q ss_pred eEEEeecCCCCHHHHHHHHhcc----C-CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCC
Q 004825 474 RCFGSTGEASNVDEYLWLMGRA----L-YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQ 548 (728)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~----~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~ 548 (728)
|.+++||+++++++.+++.+.+ + ++++++.||+||++.+++.... .....+++|+|++|++++|+ |.
T Consensus 349 r~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~-------~~ 420 (624)
T PRK12582 349 RLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW-DTERVGLIGLPLPGVELKLA-------PV 420 (624)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccC-CCCCCCCCCcCCCCcEEEEc-------cC
Confidence 9999999999999998887652 2 3579999999999865442222 22446789999999999985 45
Q ss_pred CCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEE-e---cCceEEEEcccCCeeec-Cceeec
Q 004825 549 NVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFER-T---SGGYYRAHGRADDTMNL-GGIKVS 623 (728)
Q Consensus 549 g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~-~---~dG~l~~~GR~d~~iki-~G~ri~ 623 (728)
|+. |||+|.+..+.. .|+++++.|++.|..+ | ||+|||+|++ + +||+++|+||+||+||+ +|++|+
T Consensus 421 G~~--GEl~vrg~~v~~-GY~~~p~~t~~~f~~d----g--w~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~ 491 (624)
T PRK12582 421 GDK--YEVRVKGPNVTP-GYHKDPELTAAAFDEE----G--FYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVS 491 (624)
T ss_pred CCc--eEEEEECCcccc-cccCCccchhhhcCcc----C--CccccceEEecCCcCCCCceEEeccchhhEecCCCcEec
Confidence 665 999996655432 2566788888888532 3 9999999998 4 46999999999999996 799999
Q ss_pred HHHHH--HHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecC---------CCCC---CCCHHHHHHHHHHHH---Hhh
Q 004825 624 SVEIE--RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD---------SNYT---PPDLNQLRMSFNSAV---QKK 686 (728)
Q Consensus 624 ~~eIE--~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~---------~~~~---~~~~~~l~~~l~~~l---~~~ 686 (728)
|.+|| .++ ..||.|.+|+|++.+++ .+.+.|++.. .+.. ..+.+++++.+++.| ++.
T Consensus 492 p~~iE~e~~l-~~~p~V~~a~VvG~~~~-----~~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 565 (624)
T PRK12582 492 VGTLRPDAVA-ACSPVIHDAVVAGQDRA-----FIGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAE 565 (624)
T ss_pred hHHHHHHHHH-hcCcchheEEEEcCCCC-----cEEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 99885 566 48999999999997654 3444444321 0100 013345555554444 445
Q ss_pred CCCCc-ccceEEECCCCC------CCCCCchhHHHHHHHHHh
Q 004825 687 LNPLF-KVSHVVPLPSLP------RTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 687 Lp~~~-~P~~i~~v~~lP------~t~~GKvdR~~L~~~~~~ 721 (728)
+|.+. +|..+++++++| +|++||+.|++..+.+++
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~ 607 (624)
T PRK12582 566 AGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAA 607 (624)
T ss_pred cCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHH
Confidence 77777 999999999887 456677888888777765
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-59 Score=533.08 Aligned_cols=495 Identities=17% Similarity=0.164 Sum_probs=374.1
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
....++|...++++|+.+++ .... ..++.+||.||+.+++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~ 95 (579)
T PRK09192 21 PTLVEALDYAALGEAGMNFY-DRRG----QLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQ 95 (579)
T ss_pred hhHHHHHHHhhccCCceEEE-ecCC----CEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence 45667788788777755543 3221 123589999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEecCCCCC-------HHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCC
Q 004825 257 LAGYIVVSIADSFA-------SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDG 329 (728)
Q Consensus 257 kaG~~~vpl~p~~~-------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 329 (728)
++|++++|+++..+ .+++.+++++++++++|+++...... ........ ...
T Consensus 96 ~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~-----~~~~~~~~-~~~---------------- 153 (579)
T PRK09192 96 YAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWV-----NEATHGNP-LLH---------------- 153 (579)
T ss_pred HcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHH-----HHhhcccc-ccc----------------
Confidence 99999999987543 68999999999999999987532100 01110000 000
Q ss_pred CcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHH-hcCCCCCCEEEecCCcch
Q 004825 330 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC-HMDIRKADIVAWPTNLGW 408 (728)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~d~~l~~~~~~~ 408 (728)
...+.++..... .........+++++||+|||||||.||||+++|++++..+..... .+++.++|+++++.|++|
T Consensus 154 ~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 229 (579)
T PRK09192 154 VLSHAWFKALPE----ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYH 229 (579)
T ss_pred eeehhhhcccCC----CccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCC
Confidence 111222211111 011122346789999999999999999999999999988877776 789999999999999999
Q ss_pred hhhHH-HHHHHhhhCcEEEEeCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCC---CCCCCCCcCeeEEEeecC
Q 004825 409 MMGPW-LVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN---CIDGYDWSSIRCFGSTGE 481 (728)
Q Consensus 409 ~~~~~-~~~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~---~~~~~~l~~lr~i~~gGe 481 (728)
++++. .++.++..|+++++.+.. .++..+++.+.++++|++..+|.++..+.... .....+++++|.+++||+
T Consensus 230 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~ 309 (579)
T PRK09192 230 DMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGAD 309 (579)
T ss_pred cchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCc
Confidence 99985 466789999999876521 24667899999999998777666565554322 122356789999999999
Q ss_pred CCCHHHHHHHHhccC-----CCCeEecccccccccccccCCcccc---------------------------cccccccC
Q 004825 482 ASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQA---------------------------QSLAAFST 529 (728)
Q Consensus 482 ~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~ 529 (728)
++++.+.+.+.+.+. ...+++.||+||+++.++....... ....++|+
T Consensus 310 ~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ 389 (579)
T PRK09192 310 MIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGK 389 (579)
T ss_pred cCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCC
Confidence 999999888877653 1358999999999865443221100 01247899
Q ss_pred CCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEc
Q 004825 530 PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHG 609 (728)
Q Consensus 530 p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~G 609 (728)
|++|++++|+|+++++++.|+. |||++.+..+..+ |+++ +.+.+.|..+ | ||+|||+|++ +||+++++|
T Consensus 390 ~~p~~~v~i~d~~~~~~~~g~~--Gel~i~g~~~~~g-Y~~~-~~~~~~~~~d----g--w~~TGDlg~~-~~G~l~~~G 458 (579)
T PRK09192 390 ALPGHEIEIRNEAGMPLPERVV--GHICVRGPSLMSG-YFRD-EESQDVLAAD----G--WLDTGDLGYL-LDGYLYITG 458 (579)
T ss_pred cCCCcEEEEECCCCCCCCCCCE--EEEEecCCchhhh-hcCC-ccccccccCC----c--eeeccceeeE-ECCEEEEEe
Confidence 9999999999999999999975 9999966544332 3444 5555555432 3 9999999999 999999999
Q ss_pred ccCCeeecCceeecHHHHHHHHhcCCCCee--eeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhC
Q 004825 610 RADDTMNLGGIKVSSVEIERICNAVDSNVL--ETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKL 687 (728)
Q Consensus 610 R~d~~iki~G~ri~~~eIE~~l~~~~p~V~--~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L 687 (728)
|+||+||++|++|+|.|||++|. .||+|. +|+|++.+++. + +.++++++... +. ..+.+++++++++++..
T Consensus 459 R~dd~i~~~G~~v~p~eIE~~l~-~~p~V~~~~~~v~~~~~~~-~-~~~~~~v~~~~-~~-~~~~~~l~~~~~~~l~~-- 531 (579)
T PRK09192 459 RAKDLIIINGRNIWPQDIEWIAE-QEPELRSGDAAAFSIAQEN-G-EKIVLLVQCRI-SD-EERRGQLIHALAALVRS-- 531 (579)
T ss_pred ccccEEEECCCccCHHHHHHHHH-hcCCccCCcEEEEEeccCC-C-eeEEEEEEecC-CC-hHHHHHHHHHHHHHHHH--
Confidence 99999999999999999999995 899998 89999988874 4 57888887665 33 23445666655554432
Q ss_pred CCCcccceEEECC--CCCCCCCCchhHHHHHHHHHh
Q 004825 688 NPLFKVSHVVPLP--SLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 688 p~~~~P~~i~~v~--~lP~t~~GKvdR~~L~~~~~~ 721 (728)
.+++|..+++++ .||+|++||++|++|++++..
T Consensus 532 -~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~ 566 (579)
T PRK09192 532 -EFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLS 566 (579)
T ss_pred -HhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHc
Confidence 467787777775 899999999999999998875
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=517.03 Aligned_cols=489 Identities=18% Similarity=0.178 Sum_probs=365.0
Q ss_pred hhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Q 004825 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (728)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~ 260 (728)
+.|..+++.+|+.+|+...+. .+.+||.||+++++++|++|.+.|+++||+|+|+++|++++++++|||+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~------~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~ 79 (545)
T PRK07768 6 EKMYANARTSPRGMVTGEPDA------PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGA 79 (545)
T ss_pred HHHHHHhhCCCcceEEecCCC------ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCc
Confidence 445567788999999966554 24899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHH-------HHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCH
Q 004825 261 IVVSIADSFASLEI-------SARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISW 333 (728)
Q Consensus 261 ~~vpl~p~~~~~~l-------~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 333 (728)
+++|+++..+.+++ .++++.++++.+++++...... ....... .....+
T Consensus 80 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~------------------~~~~~~ 135 (545)
T PRK07768 80 SLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAA------PVLEEKG------------------IRVLTV 135 (545)
T ss_pred cccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhh------hhhcccC------------------Cceeeh
Confidence 99999998887654 4567778999999977532110 0000000 012233
Q ss_pred HHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCC-CEEEecCCcchhhhH
Q 004825 334 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKA-DIVAWPTNLGWMMGP 412 (728)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~-d~~l~~~~~~~~~~~ 412 (728)
.++..... .......++++++|+|||||||.||||+++|+++...+......+++..+ |++++..|++|+.++
T Consensus 136 ~~l~~~~~------~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 209 (545)
T PRK07768 136 ADLLAADP------IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGM 209 (545)
T ss_pred hhhcccCC------CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHH
Confidence 34332111 12234567999999999999999999999999999988887777888876 899999999999998
Q ss_pred H-HHHHHhhhCcEEEEeCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCC----CCCCCCCcCeeEEEeecCCCC
Q 004825 413 W-LVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN----CIDGYDWSSIRCFGSTGEASN 484 (728)
Q Consensus 413 ~-~~~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~----~~~~~~l~~lr~i~~gGe~l~ 484 (728)
. .++.++..|+++++.... .++..+++.++++++|++..+|.++..+.... .....+++++|.+++||++++
T Consensus 210 ~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~ 289 (545)
T PRK07768 210 VGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPID 289 (545)
T ss_pred HHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCC
Confidence 5 467789999999988642 25567889999999999988888777665421 112356789999999999999
Q ss_pred HHHHHHHHhc---cC--CCCeEecccccccccccccCCccc-------------------------ccccccccCCCCCc
Q 004825 485 VDEYLWLMGR---AL--YKPVIEYCGGTEIGGGFITGSLLQ-------------------------AQSLAAFSTPAMGC 534 (728)
Q Consensus 485 ~~~~~~~~~~---~~--~~~l~n~YG~TE~~~~~~~~~~~~-------------------------~~~~~~iG~p~~~~ 534 (728)
++..+++.+. ++ ...+++.||+||++..++...... .....++|+|++|+
T Consensus 290 ~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~ 369 (545)
T PRK07768 290 PADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGL 369 (545)
T ss_pred HHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCC
Confidence 9998887653 32 235999999999986543322110 11245899999999
Q ss_pred eEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCe
Q 004825 535 KLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDT 614 (728)
Q Consensus 535 ~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~ 614 (728)
+++|+|++|++++.|+. |||++.+..+..+ |++...+.. ... +..||+|||+|++++||.++++||.||+
T Consensus 370 ~~~i~~~~~~~~~~g~~--Gel~v~~~~~~~g--y~~~~~~~~----~~~--~~g~~~TGDl~~~~~~g~l~~~GR~~d~ 439 (545)
T PRK07768 370 EVRVVDEDGQVLPPRGV--GVIELRGESVTPG--YLTMDGFIP----AQD--ADGWLDTGDLGYLTEEGEVVVCGRVKDV 439 (545)
T ss_pred EEEEECCCCCCCCCCCE--EEEEEccCccccc--ccCCCCCcc----ccc--CCCeeeccceEEEecCCEEEEEccccce
Confidence 99999999999999986 9999976544332 233332221 111 2239999999999999999999999999
Q ss_pred eecCceeecHHHHHHHHhcCCCCeeeeEEEeecC--CCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcc
Q 004825 615 MNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP--PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFK 692 (728)
Q Consensus 615 iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~--~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~ 692 (728)
||++|++|+|.|||++|. .||+|.+++|+++.. ...+ +.+++++.... ..+.....++.+.+++.+...+. .+
T Consensus 440 i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~l~~~~~~~l~~~~~--~~ 514 (545)
T PRK07768 440 IIMAGRNIYPTDIERAAA-RVEGVRPGNAVAVRLDAGHSR-EGFAVAVESNA-FEDPAEVRRIRHQVAHEVVAEVG--VR 514 (545)
T ss_pred EEECCEecCHHHHHHHHH-hCcccccceEEEEEecCCCCc-eEEEEEEEecc-cccHHHHHHHHHHHHHHHHHHhC--CC
Confidence 999999999999999995 899999988776543 3333 44554544433 22011122344444444433322 56
Q ss_pred cceEEECC--CCCCCCCCchhHHHHHHHHH
Q 004825 693 VSHVVPLP--SLPRTATNKVMRRVLRKQLA 720 (728)
Q Consensus 693 P~~i~~v~--~lP~t~~GKvdR~~L~~~~~ 720 (728)
|..+.+++ .||+|++||++|+.|+++|.
T Consensus 515 p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 515 PRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred ccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 77777776 89999999999999999875
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-57 Score=496.09 Aligned_cols=504 Identities=19% Similarity=0.204 Sum_probs=374.8
Q ss_pred CCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Q 004825 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSV 249 (728)
Q Consensus 170 w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~v 249 (728)
|..-...+.....+.++++.+|+.+|+.+... +.+..+||+|+.+++.++|++|++.|++.||+|+|++.|+++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~ 84 (613)
T COG1022 9 WEDVAEIHTLPKRLAERVKDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWA 84 (613)
T ss_pred chhhhhcccHHHHHHHHhhcCCcceeEeeecC----CcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHH
Confidence 43333444555667788899999999987764 56789999999999999999999999977999999999999999
Q ss_pred HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC---cEEEEc---CCCC--
Q 004825 250 VIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP---LAIVIP---AKGS-- 320 (728)
Q Consensus 250 va~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~---~~~~i~---~~~~-- 320 (728)
++.+||+.+|++.||++++.+++.++++|+++++++|+++..... ... .+....+. ....++ ....
T Consensus 85 i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (613)
T COG1022 85 IADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELL-----DLVLPVLEDCPKVVDLIVIIDLVREAVEAK 159 (613)
T ss_pred HHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHH-----HHHHhhhccccchhhhhhhhhhhhhccchh
Confidence 999999999999999999999999999999999999999984321 111 11111110 000000 0000
Q ss_pred Cccccc--CCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcC-CCCC
Q 004825 321 SFSMKL--RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD-IRKA 397 (728)
Q Consensus 321 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~ 397 (728)
...... ..+...+ .+.. ........+..++|+|.|+|||||||.|||||++|+|++..+......+. ++++
T Consensus 160 ~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~ 233 (613)
T COG1022 160 ALVLEVFPDEGISLF-LIDS-----AGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPG 233 (613)
T ss_pred hccccccccccchhh-hhcc-----cccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCC
Confidence 000000 0001111 0100 01111224567899999999999999999999999999999999999996 9999
Q ss_pred CEEEecCCcchhhhHH-HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCC-------C-CC--
Q 004825 398 DIVAWPTNLGWMMGPW-LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN-------C-ID-- 466 (728)
Q Consensus 398 d~~l~~~~~~~~~~~~-~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~-------~-~~-- 466 (728)
|++++++|++|.+... .....+..|+++... .++..+++.+++.++|+++.+|.+|+.+.+.. . ..
T Consensus 234 d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~---~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~ 310 (613)
T COG1022 234 DRVLSFLPLAHIFERAFEGGLALYGGVTVLFK---EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRK 310 (613)
T ss_pred cEEEEeCcHHHHHHHHHHHHHHhhcceEEEec---CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHH
Confidence 9999999999999885 454555555555543 35678999999999999999999999875420 0 00
Q ss_pred ---------------------------------------CCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEeccccc
Q 004825 467 ---------------------------------------GYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGT 507 (728)
Q Consensus 467 ---------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (728)
... .++|.+++||.++++++..+++.. ++++.++||.|
T Consensus 311 if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlT 387 (613)
T COG1022 311 LFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLT 387 (613)
T ss_pred HHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEeccc
Confidence 011 378999999999999999888764 49999999999
Q ss_pred ccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEecc-ccCCCccccCccccccccccCCCCC
Q 004825 508 EIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPL-IFGASSTLLNANHYDVYFSGMPSRN 586 (728)
Q Consensus 508 E~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~-~~~~~~~~~~~~~~~~~f~~~p~~~ 586 (728)
||+...+...+. ....+++|+|+|+++++|.|+ |||+|.++ .+.+ ||++|+.|++.|..+
T Consensus 388 Ets~~~~v~~~~-~~~~gtvG~p~p~~evKI~d~------------GEilVRG~~Vm~G--Yyk~pe~Taeaf~~D---- 448 (613)
T COG1022 388 ETSAVVSVNPPD-RFVLGTVGKPLPGIEVKIADD------------GEILVRGPNVMKG--YYKNPEATAEAFTED---- 448 (613)
T ss_pred ccccceEEcccc-CcccCCcCCcCCCceEEEccC------------ceEEEecchhcch--hcCChHHHhhhcccc----
Confidence 999877766553 356788999999999999993 99999554 4443 688999999999864
Q ss_pred CceeEEeCceEEEecCceEEEEcccCCeeec-CceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCC
Q 004825 587 GQILRRHGDVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS 665 (728)
Q Consensus 587 g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~ 665 (728)
| ||+|||+|.++++|+|.++||++|.||. +|++|.|+.||+.+ +.+|.|.+++|++ ++. ..+.|.|++...
T Consensus 449 G--Wf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l-~~~~~I~qi~vvg-~~k----~~~~AlIvp~~~ 520 (613)
T COG1022 449 G--WFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKL-AKSPLIEQICVVG-DDK----KFLVALIVPDFD 520 (613)
T ss_pred C--CcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHH-hcCCCeeEEEEEe-cCC----cceEEEEeCCHH
Confidence 4 9999999999999999999999999997 99999999999999 5999999999998 321 579999987641
Q ss_pred CC----------CCCCHH------HHHHHHHHHHHh---hCCCCcccceEEECC-CCC-----CCCCCchhHHHHHHHHH
Q 004825 666 NY----------TPPDLN------QLRMSFNSAVQK---KLNPLFKVSHVVPLP-SLP-----RTATNKVMRRVLRKQLA 720 (728)
Q Consensus 666 ~~----------~~~~~~------~l~~~l~~~l~~---~Lp~~~~P~~i~~v~-~lP-----~t~~GKvdR~~L~~~~~ 720 (728)
.. ...+.. ++++.+...+.. .+..+..+..++.++ ++. +|++-|+.|..+.+.++
T Consensus 521 ~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~ 600 (613)
T COG1022 521 ALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYK 600 (613)
T ss_pred HHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhh
Confidence 00 001121 223333222222 233334444555543 233 78899999999888776
Q ss_pred h
Q 004825 721 Q 721 (728)
Q Consensus 721 ~ 721 (728)
.
T Consensus 601 ~ 601 (613)
T COG1022 601 D 601 (613)
T ss_pred h
Confidence 5
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=467.52 Aligned_cols=519 Identities=17% Similarity=0.145 Sum_probs=392.7
Q ss_pred chHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Q 004825 176 VNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAI 255 (728)
Q Consensus 176 ~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~ 255 (728)
..++++.|.+-+...|+.+++-+.......+.+..+||.|..+++.++|..|++.|+++++.|||+.-|++||+++++||
T Consensus 74 ~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~ 153 (691)
T KOG1256|consen 74 PLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMAC 153 (691)
T ss_pred cccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHH
Confidence 34567889999999999999988764334577899999999999999999999999999999999999999999999999
Q ss_pred HHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhh--cCCcEEEEcCCCCCcc-cccC----
Q 004825 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDA--QAPLAIVIPAKGSSFS-MKLR---- 327 (728)
Q Consensus 256 lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~--~~~~~~~i~~~~~~~~-~~~~---- 327 (728)
...|++.|||...++++.+.+|++++.+.++|+++.. ..... +.... .+....++.-...... ....
T Consensus 154 ~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~-----k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~g 228 (691)
T KOG1256|consen 154 YAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAK-----KAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNG 228 (691)
T ss_pred HhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHH-----HHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCC
Confidence 9999999999999999999999999999999999642 11111 22221 2323333322221110 1111
Q ss_pred CCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHH--Hh----cCCCCCCEEE
Q 004825 328 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW--CH----MDIRKADIVA 401 (728)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~--~~----~~~~~~d~~l 401 (728)
-...+|+++...+... ..... .+..|+++|.|+|||||||.|||||+||+|++..+.... .. ......|+++
T Consensus 229 v~v~S~~e~~~lG~~~-~~~~~-~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~l 306 (691)
T KOG1256|consen 229 VEVYSWDEFEELGKKN-QRKPR-VPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYL 306 (691)
T ss_pred eEEEEHHHHHhhcccc-cCCCC-CCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEE
Confidence 1267899999988642 22222 577899999999999999999999999999988654311 11 1223469999
Q ss_pred ecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC-----------------
Q 004825 402 WPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC----------------- 464 (728)
Q Consensus 402 ~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~----------------- 464 (728)
+++|++|++-...-...+..|+++.+..+ |+..+.+.|++.++|++.++|.+|+++.....
T Consensus 307 SyLPLAHi~er~~~~~~~~~G~~IgF~~g--D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A 384 (691)
T KOG1256|consen 307 SYLPLAHIFERVVELYTFYIGAKIGFARG--DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFA 384 (691)
T ss_pred EeCcHHHHHHHHHHHhHhhcccEEEEecC--ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999998655566699999999985 56778888999999999999999998744200
Q ss_pred ---------CCCCCC-------------------cCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccC
Q 004825 465 ---------IDGYDW-------------------SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITG 516 (728)
Q Consensus 465 ---------~~~~~l-------------------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 516 (728)
..+... .++|.+++|+.|+++++...++..+ +++++++||.|||++..+..
T Consensus 385 ~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~ 463 (691)
T KOG1256|consen 385 MAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLT 463 (691)
T ss_pred HHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEec
Confidence 000000 3689999999999999999888776 49999999999999665555
Q ss_pred CcccccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEecc-ccCCCccccCccccccccccCCCCCCceeEEeC
Q 004825 517 SLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPL-IFGASSTLLNANHYDVYFSGMPSRNGQILRRHG 594 (728)
Q Consensus 517 ~~~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~-~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TG 594 (728)
.+.+. ..+++|.|+|+++++++|. +.+.-+.|.. |||||.|. .+.+ ||.+++.|++.|..+ | |++||
T Consensus 464 ~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~--GEIcirG~~Vf~G--YyK~p~~T~e~ideD----G--WLhTG 532 (691)
T KOG1256|consen 464 LPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADGSK--GEICVRGPNVFMG--YYKDPEKTAEAIDED----G--WLHTG 532 (691)
T ss_pred cCCCC-CCCCcCCcccCceEEEechHHhCcCcCCCc--ceEEEecchhcee--ccCChHHHhhhhccc----c--ccccc
Confidence 55443 6789999999999999884 3444555554 99999554 4443 688999999999754 4 99999
Q ss_pred ceEEEecCceEEEEcccCCeeec-CceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCC----
Q 004825 595 DVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP---- 669 (728)
Q Consensus 595 Dl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~---- 669 (728)
|+|+|+++|.|.+.||+++.+|. +|++|.|+.||++.. ..+-|.+.+|.+-... ..|+|.|+++. ....
T Consensus 533 DiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~-~~~~V~qi~V~g~s~~----~~LvaiVvpd~-e~~~~~a~ 606 (691)
T KOG1256|consen 533 DIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYK-RSLPVQQIFVLGDSLR----SFLVAIVVPDP-EVLKSWAA 606 (691)
T ss_pred cceeECCCccEEEEecccceEEcCCCCccChHHHHHHHh-cCCceEEEEEECCcch----hcEEEEEecCh-hhchhhHH
Confidence 99999999999999999999997 999999999999995 7788999888874322 68999999865 2101
Q ss_pred -----CCHHH------HHHHHHHHH-----HhhCCCCcccceEEE------CCCCCCCCCCchhHHHHHHHHHh
Q 004825 670 -----PDLNQ------LRMSFNSAV-----QKKLNPLFKVSHVVP------LPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 670 -----~~~~~------l~~~l~~~l-----~~~Lp~~~~P~~i~~------v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
.+.++ +++.+.+.+ ...|..+.....+.. ++.=-+||+=|+.|..|.+.|++
T Consensus 607 ~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~ 680 (691)
T KOG1256|consen 607 KDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKK 680 (691)
T ss_pred HccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHH
Confidence 11111 122222222 123444444445554 23334789999999999999876
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-54 Score=471.43 Aligned_cols=401 Identities=24% Similarity=0.282 Sum_probs=311.2
Q ss_pred cccccCCCCCCeEEEE-eccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcE
Q 004825 183 LSVNSKRSLDDIVIRW-CDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYI 261 (728)
Q Consensus 183 l~~~~~~~pd~~Al~~-~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~ 261 (728)
|+++|+++||++|+++ ... ++||+||+++++++|..|+++|+++|++|+|+++|+.++++++|||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~~~~~--------~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGR--------SLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTE--------EEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEECCCE--------EEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 4567889999999999 444 9999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhc--CCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004825 262 VVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQ--APLAIVIPAKGSSFSMKLRDGDISWLDFLE 338 (728)
Q Consensus 262 ~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
++|++|.++.+++.++++.+++++||+ .+...... +... ...... ......++.... .....+..
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~-~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 140 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIIT-SEAVDSEP-LKKLKSIFKQEDPSSSIIILDRDDL----------PKKEALKS 140 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEE-CHHHSCHH-HHHHHHHHTTSTTTEEEEEESHSSC----------TTCHHHHH
T ss_pred ccccccccccccccccccccceeEEEE-eccccccc-cccchhhhccccccccccccccccc----------cccccccc
Confidence 999999999999999999999999998 20000000 1101 111111 122333332111 11111111
Q ss_pred hhhccccCcccccc-CCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHH--HhcCCCCCCEEEecCCcchhhhH-HH
Q 004825 339 RVRKLKENEFAAVE-QPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW--CHMDIRKADIVAWPTNLGWMMGP-WL 414 (728)
Q Consensus 339 ~~~~~~~~~~~~~~-~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~-~~ 414 (728)
.... . ... .. ..++++++++|||||||.||+|.++|+++++.+.... ..++++ |++++..|++|.+++ ..
T Consensus 141 ~~~~-~--~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~ 214 (417)
T PF00501_consen 141 ASLS-D--EPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISA 214 (417)
T ss_dssp HHHC-H--CSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHH
T ss_pred cccc-c--ccc-cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccc
Confidence 1110 0 000 00 0569999999999999999999999999999877754 223334 699999999999999 88
Q ss_pred HHHHhhhCcEEEEeCCCCC--cchHHHHHHHhCCcEEEecHHHHHHHHcCCCCC----CCCCcCeeEEEeecCCCCHHHH
Q 004825 415 VYASLLNGASIALYNGSPL--GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID----GYDWSSIRCFGSTGEASNVDEY 488 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~--~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~----~~~l~~lr~i~~gGe~l~~~~~ 488 (728)
++.++..|+++++++.... +..+++.|+++++|++.++|+++..|++..... ..++++||.+++||+++++++.
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~ 294 (417)
T PF00501_consen 215 LLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLL 294 (417)
T ss_dssp HHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHH
T ss_pred ccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhc
Confidence 9999999999999986432 456889999999999999999999998742221 3468899999999999999999
Q ss_pred HHHHhccCCCCeEecccccccccccccCC-cccccccccccCCCCCceEEEEcCC-CCccCCCCCceeEEEEeccccCCC
Q 004825 489 LWLMGRALYKPVIEYCGGTEIGGGFITGS-LLQAQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGAS 566 (728)
Q Consensus 489 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~~~~iG~p~~~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~ 566 (728)
+++.+.++.+++++.||+||++..++... ........++|.|++|++++|+|++ +++++.|+. |||+|.+..+..+
T Consensus 295 ~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~--Gei~i~~~~~~~g 372 (417)
T PF00501_consen 295 RRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEP--GEIVIRGPNVFSG 372 (417)
T ss_dssp HHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSE--EEEEEESTTSBSE
T ss_pred cccccccccccceecccccccceeeeccccccccccccccccccccccccccccccccccccccc--ccccccCCcccee
Confidence 99999887568999999999998765442 2222356789999999999999998 999999986 9999977765432
Q ss_pred ccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecC
Q 004825 567 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLG 618 (728)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~ 618 (728)
|+.+++.+++.|.. +| ||+|||+|++|+||.|+++||.||+||+|
T Consensus 373 -y~~~~~~~~~~~~~----~~--~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 373 -YYNDPELTAEAFID----DG--WYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp -ETTBHHHHHHHEET----TS--EEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred -eecccccccccccc----cc--ceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 34566778887864 12 99999999999999999999999999986
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=430.36 Aligned_cols=512 Identities=19% Similarity=0.176 Sum_probs=395.5
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
....++|.++++++|+++|+++.+.. +++||+|++++++++|+.|...|++.||.||++|+|+++++..+||.+
T Consensus 77 ~ti~~~F~~~vrr~p~k~aii~~~~~------~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLa 150 (649)
T KOG1179|consen 77 RTIAELFLSQVRRQPDKPAIIYEGPF------QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLA 150 (649)
T ss_pred CcHHHHHHHHHHhCCCccEEEEeCCC------ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHH
Confidence 34567788899999999999998852 399999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC-CcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA-PLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
|+|++...|+++...+-|.+-|+-++++++|++.+...... ++.+... ..+.+....... ..++..++.+
T Consensus 151 KlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~-----e~~~~l~~~~i~~~~~~~~~----~~~g~~~L~~ 221 (649)
T KOG1179|consen 151 KLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALE-----EILPLLIKNGIHVFSLGPTS----VPDGIESLLA 221 (649)
T ss_pred hhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHH-----hcchhhhhccceEEecCCCC----CCchHHHHHH
Confidence 99999999999999999999999999999999986542111 1111111 112222111110 1122222333
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WL 414 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~ 414 (728)
.++.....+.+..........++++.||||||||.||..+++|.-...........++++++|+++...|++|.++. ..
T Consensus 222 ~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilG 301 (649)
T KOG1179|consen 222 KLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILG 301 (649)
T ss_pred hhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHH
Confidence 33322221111123345567889999999999999999999999887777766678999999999999999999987 68
Q ss_pred HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhc
Q 004825 415 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 494 (728)
+-++|..|+|+|+-.. ++...+|+...+++||++.-.--+++.|++.+......-..+|..+ |-.+.++.|+.+.++
T Consensus 302 i~~~l~~GaT~VlrkK-FSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~--GNGLR~diW~~Fv~R 378 (649)
T KOG1179|consen 302 IGGCLLHGATVVLRKK-FSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAY--GNGLRPDIWQQFVKR 378 (649)
T ss_pred HHHHHhcCceEEEecc-cchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEe--cCCCCchHHHHHHHH
Confidence 9999999999999754 6778999999999999999999999999999877666667788765 556779999999999
Q ss_pred cCCCCeEecccccccccccccCCcccccccccccC---------CC------CCceEEEEcCCCC--ccCCCCCceeEEE
Q 004825 495 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST---------PA------MGCKLFILGNDGC--PIPQNVPGMGELA 557 (728)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~---------p~------~~~~v~i~d~~g~--~vp~g~~giGEl~ 557 (728)
|+..++.+.||+||..+..+... ...+.+|. |+ +.+.--|.|++|- +|++|++ |.++
T Consensus 379 Fg~~~IgE~YgaTEgn~~~~N~d----~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEp--GlLv 452 (649)
T KOG1179|consen 379 FGIIKIGEFYGATEGNSNLVNYD----GRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEP--GLLV 452 (649)
T ss_pred cCCCeEEEEeccccCcceeeeec----CccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCC--ceEE
Confidence 98888999999999876433221 12222332 11 1112223445553 5789998 7554
Q ss_pred E---eccccCCCccccC-ccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhc
Q 004825 558 L---SPLIFGASSTLLN-ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 633 (728)
Q Consensus 558 v---~~~~~~~~~~~~~-~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~ 633 (728)
- .........+|.+ .+.|+.+...|-+..|+.||.|||+-.+|+.|+++|..|..|.+.-.|+||+..|||.+| .
T Consensus 453 ~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l-~ 531 (649)
T KOG1179|consen 453 GKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVL-S 531 (649)
T ss_pred EEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHH-h
Confidence 2 2222111223444 778888999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHH
Q 004825 634 VDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 713 (728)
Q Consensus 634 ~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~ 713 (728)
...++.|+.|.++.-+......=.|.|+..+ +. +.+.+ .+-+++++.||+|.+|..+.+.++|++|.+=|..+.
T Consensus 532 ~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p-~~-~~d~~----~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~ 605 (649)
T KOG1179|consen 532 ALDFLQDVNVYGVTVPGYEGRAGMAAIVLDP-TT-EKDLE----KLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKT 605 (649)
T ss_pred hhccccceeEEEEecCCccCccceEEEEecC-cc-cchHH----HHHHHHHhhCccccchHHHHHHhhhhcccchhhHHH
Confidence 8999999999998766543245566666555 33 34444 455579999999999999999999999999999999
Q ss_pred HHHHHH
Q 004825 714 VLRKQL 719 (728)
Q Consensus 714 ~L~~~~ 719 (728)
.|.+.-
T Consensus 606 ~L~~eg 611 (649)
T KOG1179|consen 606 ELQKEG 611 (649)
T ss_pred HHHHcc
Confidence 998754
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-52 Score=424.89 Aligned_cols=495 Identities=18% Similarity=0.166 Sum_probs=373.7
Q ss_pred CceeecHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceE
Q 004825 207 PVKSMTLKELRAEVWLVAYALNALGLDKGSA-IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKA 285 (728)
Q Consensus 207 ~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~-Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~ 285 (728)
...-+||.|+.+++.++|+.|.+.|++++++ |+|+++.+.+|+++.+||++.+...|-+...+..+.+.+-|+.++++.
T Consensus 86 ~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~ 165 (678)
T KOG1180|consen 86 DYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTA 165 (678)
T ss_pred ceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceE
Confidence 3468999999999999999999999998776 999999999999999999999999999999999999999999999999
Q ss_pred EEEecceecCCcccchH-hhHhhcCCc--EEEEcCCCCCc-cccc------CCCCcCHHHHHHhhhccccCccccccCCC
Q 004825 286 IFTQDLIIRGDKSIPLY-RVIDAQAPL--AIVIPAKGSSF-SMKL------RDGDISWLDFLERVRKLKENEFAAVEQPV 355 (728)
Q Consensus 286 il~~~~~~~~~~~~~~~-~~~~~~~~~--~~~i~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (728)
|+|+...+ +.. ..+...... ++.++..+... .... .-..++++++++.+.... .++.+..|
T Consensus 166 i~T~~~LL------~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~---~~~~~P~p 236 (678)
T KOG1180|consen 166 IFTDSELL------PKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE---IPPHPPKP 236 (678)
T ss_pred EEeCHHHH------HHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC---CCCCCCCC
Confidence 99998654 222 223333332 33333211111 1111 123477888888876522 33444478
Q ss_pred CCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhc-CCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCc
Q 004825 356 EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLG 434 (728)
Q Consensus 356 ~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~ 434 (728)
+|+|+|||||||||.|||||++|+|+++.+....... .+.+.|+++.++|+.|..-+..=+.++..|+++=..+.....
T Consensus 237 ~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLt 316 (678)
T KOG1180|consen 237 SDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLT 316 (678)
T ss_pred CceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceec
Confidence 9999999999999999999999999999888777665 789999999999999999985445888999887654322111
Q ss_pred c-------hHHHHHHHhCCcEEEecHHHHHHHHcCCC-------------------------C-CCC-------------
Q 004825 435 S-------GFAKFVQDAKVTMLGVVPSIVRTWKSTNC-------------------------I-DGY------------- 468 (728)
Q Consensus 435 ~-------~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~-------------------------~-~~~------------- 468 (728)
+ .---.+...++|++.++|.+|.++.+... . ...
T Consensus 317 dts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKI 396 (678)
T KOG1180|consen 317 DTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKI 396 (678)
T ss_pred ccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHH
Confidence 1 11224677899999999999998754300 0 000
Q ss_pred ---CCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCC
Q 004825 469 ---DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGC 544 (728)
Q Consensus 469 ---~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~ 544 (728)
-=-.||.+++||.+++++..+.+.-.+ .+++..+||.||++...+...+.+ ...+.+|.|++.++++++| ++|-
T Consensus 397 r~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~d-~~~g~vG~pl~c~eiKLvdw~EgG 474 (678)
T KOG1180|consen 397 RALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPED-FSTGRVGAPLPCCEIKLVDWEEGG 474 (678)
T ss_pred HHHhCCceEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChhh-cccccccCCccceEEEEEEhhhcC
Confidence 002699999999999999977766544 369999999999998776666533 4457899999999999999 3333
Q ss_pred ccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeec-Cceeec
Q 004825 545 PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNL-GGIKVS 623 (728)
Q Consensus 545 ~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki-~G~ri~ 623 (728)
-.+.+.|-.|||+|+|..+.. .||+|++.|++.|.. .+|.|||+|||+|++.+||.|.++.|++|.||. +|+.|.
T Consensus 475 Y~~~~~PPrGEI~i~G~~vt~-gY~kn~ekT~e~ft~---~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIs 550 (678)
T KOG1180|consen 475 YFAKNKPPRGEILIGGPNVTM-GYYKNEEKTKEDFTV---EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYIS 550 (678)
T ss_pred ccCCCCCCCceEEecCCccCh-hhhCChhhhhhhcee---cCCcEEEeccccceecCCCcEEEeechhhhhhhcccceee
Confidence 333222223999997776654 368899999999986 469999999999999999999999999999997 999999
Q ss_pred HHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCC---------CCCCCCHH------HHHH----HHHHH-H
Q 004825 624 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS---------NYTPPDLN------QLRM----SFNSA-V 683 (728)
Q Consensus 624 ~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~---------~~~~~~~~------~l~~----~l~~~-l 683 (728)
++-||+++. ..|-|...+|.+- ... ..++++||+... |....+-+ .+++ .|.++ -
T Consensus 551 L~KvEa~l~-s~p~V~NICvyAd--~~~--s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak 625 (678)
T KOG1180|consen 551 LGKVEAALR-SSPYVDNICVYAD--SNK--SKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAK 625 (678)
T ss_pred hHHHHHHHh-cCcchhheEEecc--ccc--ceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHH
Confidence 999999995 9999999888873 333 589999998751 11011111 1222 22222 2
Q ss_pred HhhCCCCcccceEEECCCC--C----CCCCCchhHHHHHHHHHh
Q 004825 684 QKKLNPLFKVSHVVPLPSL--P----RTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 684 ~~~Lp~~~~P~~i~~v~~l--P----~t~~GKvdR~~L~~~~~~ 721 (728)
.++|....+|..|++.++- | .|..-|+.|+.+...+++
T Consensus 626 ~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ 669 (678)
T KOG1180|consen 626 SQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKK 669 (678)
T ss_pred hcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHH
Confidence 4578888999998888752 2 444559999999988875
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=450.12 Aligned_cols=399 Identities=21% Similarity=0.224 Sum_probs=330.1
Q ss_pred cHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEec
Q 004825 212 TLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQD 290 (728)
Q Consensus 212 TY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~ 290 (728)
||.||.++++++|++|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCC
Q 004825 291 LIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGE 370 (728)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~ 370 (728)
......... ......+... +....... ...........++++++++|||||||.
T Consensus 81 ~~~~~~~~~---------~~~~~~~~~~--------------~~~~~~~~---~~~~~~~~~~~~~~~~~i~~TSGTtG~ 134 (408)
T TIGR01733 81 ALASRLAGL---------VLPIILVDPL--------------ELAALDDA---PAPPPPDAPSGPDDLAYVIYTSGSTGR 134 (408)
T ss_pred chhhhcccc---------CCceEEechh--------------hhhhcccc---cccccccCCCCCCCcEEEEEcCCCCCC
Confidence 643211111 1111111100 00000000 000011111457899999999999999
Q ss_pred CceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCC--cchHHHHHHHhCCcE
Q 004825 371 PKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPL--GSGFAKFVQDAKVTM 448 (728)
Q Consensus 371 PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~--~~~l~~~i~~~~vt~ 448 (728)
||+|.++|+++.+.+......+.++++|+++...|++|.++++.++.++..|++++++++... +..+.+.++++++|.
T Consensus 135 pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 214 (408)
T TIGR01733 135 PKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTV 214 (408)
T ss_pred CCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceE
Confidence 999999999999999888888999999999999999999999999999999999999876544 567889999999999
Q ss_pred EEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcc--ccc--cc
Q 004825 449 LGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL--QAQ--SL 524 (728)
Q Consensus 449 l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~--~~ 524 (728)
+.++|++++.|++... ..+++||.+++||+++++++.+++.+.++++.+++.||+||++..++..... ... ..
T Consensus 215 l~~~p~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~ 291 (408)
T TIGR01733 215 LNLTPSLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESP 291 (408)
T ss_pred EEeCHHHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccc
Confidence 9999999999988653 4578999999999999999999999988778999999999998765422211 111 26
Q ss_pred ccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCC--CceeEEeCceEEEecC
Q 004825 525 AAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRN--GQILRRHGDVFERTSG 602 (728)
Q Consensus 525 ~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~--g~~~y~TGDl~~~~~d 602 (728)
.++|+|.++++++|+|+++++++.|+. |||+|.+..... .|+++++.+.+.|..+++.. |.+||+|||+|+++++
T Consensus 292 ~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~~~~~~~-gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~ 368 (408)
T TIGR01733 292 VPIGRPLANTRLYVLDDDLRPVPVGVV--GELYIGGPGVAR-GYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPD 368 (408)
T ss_pred cccCcccCCceEEEECCCCCCCCCCCc--eEEEecCccccc-cccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCC
Confidence 789999999999999999999999986 999996654433 24567788888888776543 4469999999999999
Q ss_pred ceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEE
Q 004825 603 GYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAA 643 (728)
Q Consensus 603 G~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~V 643 (728)
|.+++.||.||+|+++|++|+|.|||++|. .||.|.+|+|
T Consensus 369 g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~-~~~~v~~~~v 408 (408)
T TIGR01733 369 GNLEFLGRIDDQVKIRGYRIELGEIEAALL-RHPGVREAVV 408 (408)
T ss_pred CCEEEeeccCCEEEeCeEEechHHHHHHHh-cCcchhhhcC
Confidence 999999999999999999999999999996 9999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=396.63 Aligned_cols=322 Identities=20% Similarity=0.216 Sum_probs=262.7
Q ss_pred CCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEe--CC
Q 004825 353 QPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY--NG 430 (728)
Q Consensus 353 ~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~--~~ 430 (728)
..+++++|++|||||||.||||+++|+++.+.+......+ ...++++...|++|..++..++.+++.|++++++ ..
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~ 109 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA 109 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence 3468999999999999999999999999988877665443 3567888999999999998888999999999884 34
Q ss_pred CCCcchHHHHHHHhC--CcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccc
Q 004825 431 SPLGSGFAKFVQDAK--VTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTE 508 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~--vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 508 (728)
..++..+++.+++++ +++...+|+.+..++.... ....++++|.+++||+++++++.+++.+ . ++++++.||+||
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~-~-~~~v~~~YG~TE 186 (358)
T PRK07824 110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAA-A-GINVVRTYGMSE 186 (358)
T ss_pred CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHh-c-CCcEEecccCCc
Confidence 457788999999998 5667788998887766432 2345789999999999999999888775 3 589999999999
Q ss_pred cccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCc
Q 004825 509 IGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQ 588 (728)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~ 588 (728)
++..+ ...|+|++|++++|.| |||++.+..+..+ |+++++. . .|. .+|
T Consensus 187 ~~~~~-----------~~~G~~~~g~~v~i~~-------------Gei~v~g~~~~~g-Y~~~~~~-~-~~~----~~g- 234 (358)
T PRK07824 187 TSGGC-----------VYDGVPLDGVRVRVED-------------GRIALGGPTLAKG-YRNPVDP-D-PFA----EPG- 234 (358)
T ss_pred cCCCc-----------CcCceeCCCCEEEecC-------------CEEEEecCccccc-cCCCccc-c-ccc----CCC-
Confidence 87532 1358999999999842 8999866554432 2333332 1 222 123
Q ss_pred eeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCC
Q 004825 589 ILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYT 668 (728)
Q Consensus 589 ~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~ 668 (728)
||+|||+|++ .||.++++||.||+||++|++|+|.|||++|. .||+|.+|+|++.+++..| +.++++++... +.
T Consensus 235 -~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~vv~~~~~~~g-~~~~a~v~~~~-~~- 308 (358)
T PRK07824 235 -WFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALA-THPAVADCAVFGLPDDRLG-QRVVAAVVGDG-GP- 308 (358)
T ss_pred -ceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEecCCCCCc-eEEEEEEEeCC-CC-
Confidence 9999999999 89999999999999999999999999999995 9999999999999888777 88999998765 33
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 669 PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 669 ~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
....+ .|++++++.|+.|++|..|+++++||+|++||+||++|++++.+
T Consensus 309 ~~~~~----~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 309 APTLE----ALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred CcCHH----HHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 23444 45557888999999999999999999999999999999998864
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=421.54 Aligned_cols=490 Identities=13% Similarity=0.060 Sum_probs=345.7
Q ss_pred CCCCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Q 004825 168 GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (728)
Q Consensus 168 ~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (728)
.+|+.-.......++|.+.++++|+++|+.+... .+.++.+||+|+.++++++|++|++.|+++||+|+|+++|+++
T Consensus 418 ~~~~~~~~~~Tl~dll~~~a~~~pd~~al~~~~~---~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~E 494 (1452)
T PTZ00297 418 REYNPLAGVRSLGEMWERSVTRHSTFRCLGQTSE---SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRN 494 (1452)
T ss_pred hcCCCcccCCCHHHHHHHHHHHCCCCeEEEEecc---CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence 4566656566777888889999999999974311 1224589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCCcEEEEcCCCC-C-ccc
Q 004825 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAPLAIVIPAKGS-S-FSM 324 (728)
Q Consensus 248 ~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~-~-~~~ 324 (728)
|+++.+||+++|+++||+++ +.+.+.+++++++++++|++..... .. .+....-..+++++.... . ...
T Consensus 495 wvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~------kl~~i~~~~Lr~IIv~d~~~~~~~~~~ 566 (1452)
T PTZ00297 495 IVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVA------AILTCRSRKLETVVYTHSFYDEDDHAV 566 (1452)
T ss_pred HHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHH------HHHhhcccCCcEEEEECCCcccccccc
Confidence 99999999999999999975 4678999999999999999864321 11 111111223444432100 0 000
Q ss_pred cc--CCCCcCHHHHHHhhhccccCccccccCCCCCceEEEe---cCCCCCCCceEEecCcHHHHHHHHHHHhc---CCCC
Q 004825 325 KL--RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILF---SSGTTGEPKAIPWTNATPFKAAADAWCHM---DIRK 396 (728)
Q Consensus 325 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiy---TSGSTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~ 396 (728)
.. .....+|+++++.+... . ........+++++.|+| ||||||.||||++||+|++..+....... ...+
T Consensus 567 ~~~~~i~~~s~~~ll~~G~~~-~-~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~ 644 (1452)
T PTZ00297 567 ARDLNITLIPYEFVEQKGRLC-P-VPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFK 644 (1452)
T ss_pred cccCCcceeeHHHHHhcCccc-C-ccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCC
Confidence 00 01245688888765321 1 11123346889999996 99999999999999999999887765432 4567
Q ss_pred CCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC----C-------
Q 004825 397 ADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC----I------- 465 (728)
Q Consensus 397 ~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~----~------- 465 (728)
+|+++.++|++|.++....+.++..|+++.. .++..+++.|+++++|+++++|.+|+.+..... .
T Consensus 645 ~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~----~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~ 720 (1452)
T PTZ00297 645 KHLMVHFTPFAMLFNRVFVLGLFAHGSAVAT----VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSW 720 (1452)
T ss_pred CCEEEEechHHHHHHHHHHHHHHHcCCEEEe----CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 8999999999999987667788999999864 346789999999999999999999998754310 0
Q ss_pred ---------------CCCC---------------C-cCeeEEEeecC--CCCHHHHHHHHhccCCCCeEecccccccccc
Q 004825 466 ---------------DGYD---------------W-SSIRCFGSTGE--ASNVDEYLWLMGRALYKPVIEYCGGTEIGGG 512 (728)
Q Consensus 466 ---------------~~~~---------------l-~~lr~i~~gGe--~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 512 (728)
.... + .++|.+++||. +++..+. . +.++..+||.||+.
T Consensus 721 lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~-----~--~i~i~~g~glTE~~-- 791 (1452)
T PTZ00297 721 LFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL-----E--HISVCYVPCLREVF-- 791 (1452)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh-----C--CceEEEecceEEee--
Confidence 0000 0 36899998873 4443321 1 36788899999953
Q ss_pred cccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEE
Q 004825 513 FITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRR 592 (728)
Q Consensus 513 ~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~ 592 (728)
+...+. .....|+|+||++++|.|....--..+ .|||+++. .++++.|++.+
T Consensus 792 -~~~~~~---~~~~~G~PlpgvEvKI~~~~E~~~~~~---~GEIlvr~--------~kdpe~T~e~~------------- 843 (1452)
T PTZ00297 792 -FLPSEG---VFCVDGTPAPSLQVDLEPFDEPSDGAG---IGQLVLAK--------KGEPRRTLPIA------------- 843 (1452)
T ss_pred -eecCCC---CcccCCeecCceEEEEcccccccCCCC---CCeEEEEE--------CCChHHHHHhh-------------
Confidence 222221 122349999999999986421101112 39999942 23566665421
Q ss_pred eCceEEEecCceEEEEcccCCeeec-CceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCC------
Q 004825 593 HGDVFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS------ 665 (728)
Q Consensus 593 TGDl~~~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~------ 665 (728)
+.|++||+|.++||++|.||. +|++|.|+.||+.+ ..+|.|.+++|++-.. ..++|.|++...
T Consensus 844 ----~gW~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l-~~sp~I~qi~V~Gd~~-----k~lvALVvpd~e~l~~~w 913 (1452)
T PTZ00297 844 ----AQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIF-SQSRYVNDIFLYADPS-----RPIIAIVSPNRDTVEFEW 913 (1452)
T ss_pred ----CcCccCCeEEEEeccccceECCCCcEEcHHHHHHHH-hcCCCccEEEEEecCC-----CceEEEEEeCHHHHHHHH
Confidence 234579999999999999997 99999999999999 5999999999998432 459999987631
Q ss_pred ----CCC-------CCCHHHHHH----HHHHH---HH--hhCCCCcccceEEECC-CC-----CCCCCCchhHHHHHHHH
Q 004825 666 ----NYT-------PPDLNQLRM----SFNSA---VQ--KKLNPLFKVSHVVPLP-SL-----PRTATNKVMRRVLRKQL 719 (728)
Q Consensus 666 ----~~~-------~~~~~~l~~----~l~~~---l~--~~Lp~~~~P~~i~~v~-~l-----P~t~~GKvdR~~L~~~~ 719 (728)
+.. ..+..++.+ .+.+. +. ..+..+.++..|.+++ .+ -+||+.|+.|+.+.+.+
T Consensus 914 a~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY 993 (1452)
T PTZ00297 914 RQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYF 993 (1452)
T ss_pred HHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHH
Confidence 100 012233322 12222 22 2256678887766654 45 48999999999999988
Q ss_pred Hh
Q 004825 720 AQ 721 (728)
Q Consensus 720 ~~ 721 (728)
++
T Consensus 994 ~~ 995 (1452)
T PTZ00297 994 SS 995 (1452)
T ss_pred HH
Confidence 76
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=357.62 Aligned_cols=289 Identities=18% Similarity=0.178 Sum_probs=229.0
Q ss_pred CCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCC--CCEEEecCCcchhhhH-HHHHHHhhhCcEEEEeCCCC
Q 004825 356 EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRK--ADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGSP 432 (728)
Q Consensus 356 ~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~ 432 (728)
+..++++|||||||.||||+++|+++.+.+.+....++++. .|++++..|++|..+. +.++.++..|+++++.+. .
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~-~ 173 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA-A 173 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC-C
Confidence 55889999999999999999999999988877777777644 4689999999998886 678889999999998764 4
Q ss_pred CcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccc
Q 004825 433 LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGG 512 (728)
Q Consensus 433 ~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 512 (728)
++..+++.++. .|++.++|++++.+.+.. .++++++. ++||+++++++++++.+. +...+++.||+||++++
T Consensus 174 ~~~~~l~~i~~--~t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i 245 (386)
T TIGR02372 174 PASGIMRHARP--GDLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGI 245 (386)
T ss_pred ChHHHHHhhcc--CCEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccc
Confidence 55667776654 389999999999997642 34677876 688999999999988764 33468999999999864
Q ss_pred cccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEE
Q 004825 513 FITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRR 592 (728)
Q Consensus 513 ~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~ 592 (728)
.+... +...|+|+|+.++.+ | ++ . +. .| ..|++
T Consensus 246 ~~~~~------~~~~~~~~p~~~~~~-~-~~------~----~~-------------------------g~----~~~~~ 278 (386)
T TIGR02372 246 GLREA------PDDPFRLLPDLACFA-D-TL------S----SA-------------------------GL----ARRLD 278 (386)
T ss_pred ccccC------CCCCcccCCCccccC-C-Cc------c----CC-------------------------Cc----cceee
Confidence 43221 123456666554432 1 00 0 00 00 12689
Q ss_pred eCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCH
Q 004825 593 HGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 672 (728)
Q Consensus 593 TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~ 672 (728)
|||+++|+++|+++|+||+||+||++|++|+|.|||++|. .||+|.+|+|+. .+ +++.|+|++++ +. +.
T Consensus 279 tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~-~~p~V~~~~v~~-----~g-~~~~a~vv~~~-~~---~~ 347 (386)
T TIGR02372 279 LQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILE-RNPRVRAAAVRL-----DG-RRLKAFIVVAE-DA---DE 347 (386)
T ss_pred cCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHH-cCCCceEEEEEc-----CC-ceEEEEEEECC-CC---Ch
Confidence 9999999999999999999999999999999999999995 999999998853 24 68999999876 33 33
Q ss_pred HHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchh
Q 004825 673 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 711 (728)
Q Consensus 673 ~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvd 711 (728)
..+.+.|+++++++||+|++|..+.++++||+|++||++
T Consensus 348 ~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 348 AELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 445667888899999999999999999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=372.26 Aligned_cols=502 Identities=17% Similarity=0.105 Sum_probs=340.6
Q ss_pred hcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcE
Q 004825 182 CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYI 261 (728)
Q Consensus 182 ~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~ 261 (728)
.+.+.+.+.|+.++..+-......+...++||++....+|.+++.|...|...|+.|++++.++.++++..++++++|..
T Consensus 41 ~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~ 120 (1032)
T KOG1178|consen 41 SFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLT 120 (1032)
T ss_pred HHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceE
Confidence 35555666777777766544333455569999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCC----HHHHHHH---HHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHH
Q 004825 262 VVSIADSFA----SLEISAR---LRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWL 334 (728)
Q Consensus 262 ~vpl~p~~~----~~~l~~~---l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 334 (728)
++|+||++| ++++..+ +......++ ..+ ++.+... .+...+...... .
T Consensus 121 ~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~----------~~l---~i~~~~~--------~~~~~~~sv~~~----~ 175 (1032)
T KOG1178|consen 121 FLPIDPSWPNSELAGYLMRIAHFLTSVELEIV----------RRL---NIIDILL--------NSLFPKLSVETI----A 175 (1032)
T ss_pred EEEecCCCcccccchHHHhhhhhheeccceeh----------hhh---hhHHHHh--------hccccccchhhc----c
Confidence 999999999 3322211 111111110 001 1110000 000000000000 1
Q ss_pred HHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHH
Q 004825 335 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL 414 (728)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 414 (728)
+....... ...........+++.+++.||||+||.||||.-+|..+++...|....+..+..+++-....++++.....
T Consensus 176 ~~f~~~~~-~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~ 254 (1032)
T KOG1178|consen 176 DSFQMVLH-NEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQK 254 (1032)
T ss_pred chhhhhhc-cCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHH
Confidence 11111111 11122223455788999999999999999999999999999999999999999998866667777777765
Q ss_pred HHHHhhhCcEEEEeCCCC---CcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCC-------------CCCCcCeeEEEe
Q 004825 415 VYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID-------------GYDWSSIRCFGS 478 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~---~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~-------------~~~l~~lr~i~~ 478 (728)
+..++++.+..++++... .+..+.+.+++++++.++.+|++.+.++...... ....+.|+...+
T Consensus 255 ~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~ 334 (1032)
T KOG1178|consen 255 FIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVL 334 (1032)
T ss_pred HHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeee
Confidence 555555555544444222 2578999999999999999999988887653221 112347999999
Q ss_pred ecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccc--------cccccccCCC--CCceEEEEcCCCCccCC
Q 004825 479 TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQA--------QSLAAFSTPA--MGCKLFILGNDGCPIPQ 548 (728)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~--------~~~~~iG~p~--~~~~v~i~d~~g~~vp~ 548 (728)
+||+....++..+...+.-.-...-|++++............. ....+.+.-+ +.+.+.+....|.+.+.
T Consensus 335 ~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 414 (1032)
T KOG1178|consen 335 GGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEG 414 (1032)
T ss_pred cCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeeccCcccCC
Confidence 9999998887755544432223445888887764432211100 0000111001 12344555555666655
Q ss_pred CCCceeEEEEecccc-CCCccccCccccccccccCC-CC--CCceeEEeCceEEEecCceEEEEcccCCeeecCceeecH
Q 004825 549 NVPGMGELALSPLIF-GASSTLLNANHYDVYFSGMP-SR--NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSS 624 (728)
Q Consensus 549 g~~giGEl~v~~~~~-~~~~~~~~~~~~~~~f~~~p-~~--~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~ 624 (728)
++. -.+++.... +.... .+-.+.+.|.++. +. .-+|+|||||+||..++|.+++.||.|+|||+||+||++
T Consensus 415 ~v~---~~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L 489 (1032)
T KOG1178|consen 415 GVG---KGCLGAEQNLSSWVV--DGYSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIEL 489 (1032)
T ss_pred ccc---ceeecccccccceee--ccccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEeh
Confidence 552 222222111 11100 1111222332222 12 236899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCC
Q 004825 625 VEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPR 704 (728)
Q Consensus 625 ~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~ 704 (728)
+||+.++. .||.|.++.+.+..+...+ +++++|++... +. ...+...|++++.++|+.||+|..+|.++++|+
T Consensus 490 ~ei~t~v~-~~p~v~~~itl~~~~~~~~-~~l~aFvv~~~-~~----~~~~~~~i~~~l~~~La~y~vPs~~V~l~~vPl 562 (1032)
T KOG1178|consen 490 GELNTVVE-VHPDVKEAITLARENSTVG-QTLLAFVVERG-GS----KSVLIRDIRNYLKKELASYMLPSLVVPLAKVPL 562 (1032)
T ss_pred hhhchhhc-cCcchhhhheeeeeccccC-ceEEEEEeccC-CC----CchhHHHHHHhhcccccceecceEEEEhhhCCc
Confidence 99999995 8899999999999888776 89999999876 33 222366788899999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHh
Q 004825 705 TATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 705 t~~GKvdR~~L~~~~~~ 721 (728)
|+|||||+++|.+...+
T Consensus 563 ~~~GKvDkkaL~~~~s~ 579 (1032)
T KOG1178|consen 563 NPNGKVDKKALLEYNSK 579 (1032)
T ss_pred CCCCCcChhhhhhhhhh
Confidence 99999999999994444
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=328.33 Aligned_cols=328 Identities=20% Similarity=0.187 Sum_probs=241.0
Q ss_pred CCCCCceEEEecCCCCCCCceEEecCcHHHHHHHH---HHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEEEe
Q 004825 353 QPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD---AWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIALY 428 (728)
Q Consensus 353 ~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~ 428 (728)
.+.+++++++|||||||.||+|.++|.++...... ....++++++|+++...++++..+. ...+.++..|++++..
T Consensus 72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 35578899999999999999999999987654332 2344688999999887766654443 3456788899999877
Q ss_pred CCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCC--CCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccc
Q 004825 429 NGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG 506 (728)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (728)
+.. ++..+++.|+++++|++.++|+++..|++.....+. ...++|.+++|||+++++..+++.+.++ ++++|.||+
T Consensus 152 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~~YG~ 229 (422)
T TIGR02155 152 SGG-QTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLG-MKATDIYGL 229 (422)
T ss_pred CCC-CHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhC-CceEecccc
Confidence 543 457899999999999999999999988765322222 2358999999999999999988887775 899999999
Q ss_pred cccccccccCCcccccccccccCCC--CCceEEEEcC-CCCccCCCCCceeEEEEeccccCCCccccCccccccccccCC
Q 004825 507 TEIGGGFITGSLLQAQSLAAFSTPA--MGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 583 (728)
Q Consensus 507 TE~~~~~~~~~~~~~~~~~~iG~p~--~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p 583 (728)
||+++......... ...|.++ ++..++|+|+ +|+++|+|+. |||++++.. +..| |
T Consensus 230 tE~~~~~~~~~~~~----~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~--Gelvvt~~~-------------~~~~---p 287 (422)
T TIGR02155 230 SEVIGPGVAMECVE----TQDGLHIWEDHFYPEIIDPHTGEVLPDGEE--GELVFTTLT-------------KEAL---P 287 (422)
T ss_pred hhhcCCceeecccc----cCCCceEecCeeEEEEECCCCCCCCCCCCe--eEEEEecCC-------------cccc---c
Confidence 99852111111100 0123333 3567789994 7999999987 999996421 1122 2
Q ss_pred CCCCceeEEeCceEEEecC-c-----eEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEE
Q 004825 584 SRNGQILRRHGDVFERTSG-G-----YYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 657 (728)
Q Consensus 584 ~~~g~~~y~TGDl~~~~~d-G-----~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~ 657 (728)
. .||+|||+++++++ | .+++.||.||+||++|.+|+|.|||.+|. .||+|.....+.+...... +.++
T Consensus 288 ~----~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~-~~~~v~~~~q~~~~~~~~~-~~~~ 361 (422)
T TIGR02155 288 V----IRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVIL-KMDELSPHYQLELTRNGHM-DELT 361 (422)
T ss_pred e----eeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHH-hCcCcCCCEEEEEEcCCCc-cEEE
Confidence 1 28999999999876 4 46899999999999999999999999995 8999984454555444333 5787
Q ss_pred EEEEecCCCCC----CCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHH
Q 004825 658 IVVVFKDSNYT----PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 713 (728)
Q Consensus 658 a~vv~~~~~~~----~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~ 713 (728)
+.++... +.. ..+...+.+.|++.+++.+..++. ..++.+++||+|+ ||+.|.
T Consensus 362 ~~v~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 362 LKVELKP-ESYTLRLHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred EEEEEec-CcccccchHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 7777664 220 122345577888889888887642 3444567999988 999763
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=273.31 Aligned_cols=328 Identities=16% Similarity=0.065 Sum_probs=218.8
Q ss_pred CCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHH---hcCCCCCCEEEecCCcchhhhHHH-HHHHhhhCcEEEEe
Q 004825 353 QPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC---HMDIRKADIVAWPTNLGWMMGPWL-VYASLLNGASIALY 428 (728)
Q Consensus 353 ~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~-~~~~L~~G~~lvl~ 428 (728)
.+.++++.+.|||||||.||+|.++|.++......... ..+++++|+++...++++..+.+. .++++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 45678899999999999999999999998766544433 358999999999999988877644 45667888886543
Q ss_pred CCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCC--CCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccc
Q 004825 429 NGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG 506 (728)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (728)
. . ....++.|+++++|++..+|+.+..|.+.....+. ..+++|.+++|||+++++..+++.+.+ +++++|.||+
T Consensus 163 ~-~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~ 238 (445)
T TIGR03335 163 G-K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGS 238 (445)
T ss_pred C-c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCCh
Confidence 2 2 24568899999999999999988877654222221 246899999999999999888887766 4899999999
Q ss_pred cccccccccCCcccccccccccCCCCCceEEEEcCC-CCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCC
Q 004825 507 TEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSR 585 (728)
Q Consensus 507 TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~ 585 (728)
||++... .+.. ......+-+.+.+.|+|++ ++++|+|+. |||+++...-.. ....--++
T Consensus 239 TE~~~~~-~c~~-----~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~--GELvvT~L~~~~-------~r~~~Pli----- 298 (445)
T TIGR03335 239 TEGTMCG-ECQA-----VAGLHVPEDLVHLDVYDPRHQRFLPDGEC--GRIVLTTLLKPG-------ERCGSLLI----- 298 (445)
T ss_pred hhhhheE-EecC-----CCCccccCCceEEEEEcCCCCCCCcCCCc--eEEEEEecCCCC-------ccCCceEE-----
Confidence 9986322 1111 0112223345789999987 567999987 999996543110 00000122
Q ss_pred CCceeEEeCceEEEec-C----c----eEEEEcccCCeeecCceeecHHHHHHHHhcCC---CCee-eeEEEeecCCCCC
Q 004825 586 NGQILRRHGDVFERTS-G----G----YYRAHGRADDTMNLGGIKVSSVEIERICNAVD---SNVL-ETAAIGVPPPDGG 652 (728)
Q Consensus 586 ~g~~~y~TGDl~~~~~-d----G----~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~---p~V~-~~~Vv~~~~~~~g 652 (728)
.|+|||++++.. + | .+...||.||+++++|.+|+|.+||++|. .+ +++. +..++...+. .+
T Consensus 299 ----RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~-~~~~~~~~~~~~~~~~~~~~-~~ 372 (445)
T TIGR03335 299 ----NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVF-QRENMDSLTGEYEAFLYGEE-EG 372 (445)
T ss_pred ----EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHh-ccCCCCCCCccEEEEEecCC-CC
Confidence 499999999742 2 3 24557999999999999999999999996 64 5554 2333332222 22
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCC-------CCcccceEEE--CCCCCCCC-CCchhH
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN-------PLFKVSHVVP--LPSLPRTA-TNKVMR 712 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp-------~~~~P~~i~~--v~~lP~t~-~GKvdR 712 (728)
...+...+...+ +. ..+.+++.+.+.+.+...++ ...+...+.. -..||+++ .||..|
T Consensus 373 ~~~~~v~~e~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 373 EITLRVSLECED-KD-NCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred CceEEEEEEecC-cc-cchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 235555555544 22 12344555555444111121 1222333333 34799984 698765
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=247.22 Aligned_cols=516 Identities=14% Similarity=0.110 Sum_probs=339.4
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAI 255 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vva~lA~ 255 (728)
-+.-++|...++++||.+|+..-+.. .....++||++|..+|.++|.+|... -+++||.|+++.+++.|++++++||
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~--~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~C 847 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNAR--GATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYAC 847 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccC--CcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHH
Confidence 34557788889999999999887653 34457999999999999999999987 6799999999999999999999999
Q ss_pred HHcCcEEEecCCCCC------HHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCCcEEEEcCCCCCcccccCC
Q 004825 256 VLAGYIVVSIADSFA------SLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAPLAIVIPAKGSSFSMKLRD 328 (728)
Q Consensus 256 lkaG~~~vpl~p~~~------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~ 328 (728)
+.+|.+.+|+.|-.. -..+..|++.+++++|+++.......+.-... .+....-+.+.+.+...
T Consensus 848 ly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~--------- 918 (1363)
T KOG3628|consen 848 LYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLP--------- 918 (1363)
T ss_pred HhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccc---------
Confidence 999999999988443 34678899999999999998543211111111 11111111111111100
Q ss_pred CCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcch
Q 004825 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGW 408 (728)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 408 (728)
.+|..-...... .....++.....+.+||+=+.--++|.--||..+|.++++.++.......+.+.--++.+.+.+-
T Consensus 919 --~t~~k~~~~~~k-~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~s 995 (1363)
T KOG3628|consen 919 --ETIRKRKKNIKK-LNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYS 995 (1363)
T ss_pred --hhhhhhhhhhhc-cCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCcc
Confidence 001111111110 11122233345688999999888999999999999999999999988888877776666666666
Q ss_pred hhhH-HHHHHHhhhCcEEEEeCCCC---CcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCC-------CCCcCeeEEE
Q 004825 409 MMGP-WLVYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDG-------YDWSSIRCFG 477 (728)
Q Consensus 409 ~~~~-~~~~~~L~~G~~lvl~~~~~---~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~-------~~l~~lr~i~ 477 (728)
..|+ ..++...++|...++.+... ++..|+..|++++|.-++.+=+.++.+...-.... .++++ ..++
T Consensus 996 Glgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~-s~vv 1074 (1363)
T KOG3628|consen 996 GLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSS-SIVV 1074 (1363)
T ss_pred chhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhccccc-ceee
Confidence 6665 56888999999988876432 56779999999999999999888888766533222 22222 3344
Q ss_pred eecCCCCHHHHHHHHhccC----CC-C-------------eEecccccccccccccCCcccccc-------------ccc
Q 004825 478 STGEASNVDEYLWLMGRAL----YK-P-------------VIEYCGGTEIGGGFITGSLLQAQS-------------LAA 526 (728)
Q Consensus 478 ~gGe~l~~~~~~~~~~~~~----~~-~-------------l~n~YG~TE~~~~~~~~~~~~~~~-------------~~~ 526 (728)
..-|+-...+..-+.+.+. .+ . ..+.|-..|-+....-........ ...
T Consensus 1075 ~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~d 1154 (1363)
T KOG3628|consen 1075 PAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYD 1154 (1363)
T ss_pred ecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCcccccc
Confidence 4444443444443333221 00 0 123343333332211100000000 112
Q ss_pred ccCCCCCceEEEEcCC-CCccCCCCCceeEEEEeccccCCCccccCcccccccccc---CCCCCCceeEEeCceEEEec-
Q 004825 527 FSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG---MPSRNGQILRRHGDVFERTS- 601 (728)
Q Consensus 527 iG~p~~~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~---~p~~~g~~~y~TGDl~~~~~- 601 (728)
.|.-.+++++.|++++ -.+|..|+ .||||+.+..-...+....++.....|.. .....|..|-||||+|+...
T Consensus 1155 SG~~~~~~~i~IvnPEtk~pc~dge--~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t 1232 (1363)
T KOG3628|consen 1155 SGKLPVYTDIAIVNPETKGPCRDGE--LGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRT 1232 (1363)
T ss_pred CCcccccceeEEeCCccccccccCC--cceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeee
Confidence 3667789999999987 56788886 49999944322211111122222222221 11234667999999999742
Q ss_pred -----C----ceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCH
Q 004825 602 -----G----GYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 672 (728)
Q Consensus 602 -----d----G~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~ 672 (728)
. ..||++|-.++.+-++|.|.+|.+||..+.+.||.|.+|+|+.. . ..+|..+.... ....
T Consensus 1233 ~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~----~--glvVvviE~~g----q~~~ 1302 (1363)
T KOG3628|consen 1233 SLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQA----T--GLVVVVIECHG----QQEL 1302 (1363)
T ss_pred ecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEee----C--CeEEEEEEecC----chhH
Confidence 2 35899999999999999999999999999889999999999863 2 35666665554 2345
Q ss_pred HHHHHHHHHHHHhhCCCCcccceEEECCC--CCCCCCCchhHHHHHHHHHh
Q 004825 673 NQLRMSFNSAVQKKLNPLFKVSHVVPLPS--LPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 673 ~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~--lP~t~~GKvdR~~L~~~~~~ 721 (728)
.+|.-.|.+.+-++ ++.+-..+++++. +|+++.|...|..+++.+-.
T Consensus 1303 ~~LvPlIv~~vL~e--H~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~ 1351 (1363)
T KOG3628|consen 1303 ADLVPLIVNVVLEE--HYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLA 1351 (1363)
T ss_pred hhhhHHHHHHHHhh--cceEEEEEEEecCCccccCCchhhHHHHHHHHHHh
Confidence 55666554444332 2344466667764 99999999999998887654
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-25 Score=217.45 Aligned_cols=221 Identities=19% Similarity=0.119 Sum_probs=161.8
Q ss_pred cccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcE
Q 004825 183 LSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA-LGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYI 261 (728)
Q Consensus 183 l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~ 261 (728)
|...++++|+++|+++.+.+ .+..+++||+||.++++++|+.|++ .|+++||+|+|+++|+++++++++|++++|++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~--~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v 79 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDA--TGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVE 79 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCC--CCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCE
Confidence 34456789999999864321 0012479999999999999999998 79999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCc--ccccCCCCcCHHHHHHh
Q 004825 262 VVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSF--SMKLRDGDISWLDFLER 339 (728)
Q Consensus 262 ~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 339 (728)
++|++ +++++++|++........ ....++.+....... ......+..+|.+....
T Consensus 80 ~vp~n-------------~s~a~~~v~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (227)
T TIGR03089 80 VVLAG-------------DPDADVVVTGPDRLAAAA----------GSGEVVALSLDPLGRRVAGELPPGVIDFAPEVRV 136 (227)
T ss_pred EEeCC-------------CCCCCEEEeCcchhhhcc----------cCCceEEEeccccccCCCCCCCCcccchhhhhhc
Confidence 99995 789999999886543211 112223321100000 00001222345554432
Q ss_pred hhccccCccccc-cCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HHHHH
Q 004825 340 VRKLKENEFAAV-EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYA 417 (728)
Q Consensus 340 ~~~~~~~~~~~~-~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~ 417 (728)
.. ....+. ...++|+|.|+||||+ +|++++... ...+++++|+++ .+|++|..++ ..++.
T Consensus 137 ~~----~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~ 198 (227)
T TIGR03089 137 HG----DQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLA 198 (227)
T ss_pred cC----CCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHH
Confidence 11 111212 4567999999999985 666655543 456789999999 9999999998 57999
Q ss_pred HhhhCcEEEEeCCCCCcchHHHHHHHhCCc
Q 004825 418 SLLNGASIALYNGSPLGSGFAKFVQDAKVT 447 (728)
Q Consensus 418 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt 447 (728)
+|..|+++++.+ .+++..+++.|+++|||
T Consensus 199 ~l~~G~t~v~~~-rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 199 PLAAGGSLVLVT-HPDPARLDQIAETERVT 227 (227)
T ss_pred HhccCceEEEec-CCCHHHHHHHHHhhcCC
Confidence 999999999996 57999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-23 Score=213.92 Aligned_cols=326 Identities=23% Similarity=0.211 Sum_probs=228.2
Q ss_pred cCCCCCceEEEecCCCCCCCceEEecCcHHHHH---HHHHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEEE
Q 004825 352 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 427 (728)
Q Consensus 352 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl 427 (728)
..+-++..+|--||||||+|+-+..+...+... +.......+...+|++..+..++...+- ..-+++--.|++++-
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip 165 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP 165 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence 344566667888999999999999998765443 3333344688999998887776655544 444555556666543
Q ss_pred eCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCC--CCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEeccc
Q 004825 428 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDG--YDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 505 (728)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~--~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (728)
..+ ...+..+++|+++++|++.++|+.+..|.......+ ..-.+|+.+++|+|+++++..+.+.++++ +..++.||
T Consensus 166 ~~~-g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g-~~~~diYG 243 (438)
T COG1541 166 ISG-GNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFG-CKAFDIYG 243 (438)
T ss_pred cCC-ccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhC-Cceeeccc
Confidence 322 245678999999999999999999999987654442 33357999999999999999999988875 88999999
Q ss_pred cccccccc-ccCCcccccccccccCCCCCceEEEEcCC-CCccCCCCCceeEEEEeccccCCCccccCccccccccccCC
Q 004825 506 GTEIGGGF-ITGSLLQAQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 583 (728)
Q Consensus 506 ~TE~~~~~-~~~~~~~~~~~~~iG~p~~~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p 583 (728)
.||..+.. ..+... .-.-..-+...+.|+|++ |+++|.|+. |||+++...-.+ --++
T Consensus 244 ltE~~g~g~~eC~~~-----~glhi~eD~~~~Ei~dP~t~e~l~dge~--GelV~T~L~~~~-----------~PlI--- 302 (438)
T COG1541 244 LTEGFGPGAGECTER-----NGLHIWEDHFIFEIVDPETGEQLPDGER--GELVITTLTKEG-----------MPLI--- 302 (438)
T ss_pred cccccCCcccccccc-----cCCCcchhhceeeeecCCcCccCCCCCe--eEEEEEeccccC-----------cceE---
Confidence 99997652 111111 011234467889999965 999999986 999985432110 0122
Q ss_pred CCCCceeEEeCceEEEecC----ce-----EEEEcccCCeeecCceeecHHHHHHHHhcCCCCee-eeEEEeecCCCCCc
Q 004825 584 SRNGQILRRHGDVFERTSG----GY-----YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVL-ETAAIGVPPPDGGP 653 (728)
Q Consensus 584 ~~~g~~~y~TGDl~~~~~d----G~-----l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~-~~~Vv~~~~~~~g~ 653 (728)
.|+|||+++..++ |. ..+.||.||+++++|.+|+|..||++|. +.+.+. +..++... .++.
T Consensus 303 ------RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~-~~~~~~~~yqi~~~~--~~~~ 373 (438)
T COG1541 303 ------RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLL-QIPEVTPHYQIILTR--NGGL 373 (438)
T ss_pred ------EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHh-cccCCCceEEEEEec--CCCC
Confidence 4999999999763 32 3578999999999999999999999997 888888 55555554 2333
Q ss_pred eEEEEEEEecCCCCC-CCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhH
Q 004825 654 EQLTIVVVFKDSNYT-PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMR 712 (728)
Q Consensus 654 ~~l~a~vv~~~~~~~-~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR 712 (728)
..|.+-|+..+ +.+ ..+...+.+.+...+...+.. -+--.++.+..+|+|- ||..|
T Consensus 374 d~L~V~vE~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-~~~v~~v~~g~l~r~~-~K~kr 430 (438)
T COG1541 374 DELTVRVELEN-EAEELEDERRLAKKLIKNIKSELGV-RVEVELVEPGELPRTE-GKAKR 430 (438)
T ss_pred ceEEEEEEecC-cccchHHHHHHHHHHHHHHHhhcCC-ceEEEEEeccceeccc-CceeE
Confidence 68888888875 220 112222334555555555442 2223566677899995 46543
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=197.50 Aligned_cols=114 Identities=22% Similarity=0.247 Sum_probs=102.4
Q ss_pred eEEeCceEEE-ecCceEEEEcccCCeeecCc---eeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCC
Q 004825 590 LRRHGDVFER-TSGGYYRAHGRADDTMNLGG---IKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS 665 (728)
Q Consensus 590 ~y~TGDl~~~-~~dG~l~~~GR~d~~iki~G---~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~ 665 (728)
||+|||+|++ |+||+++|.||.| +| ++|+|. ||++|. +||+|.+|+|++++++..| +.++|||++..
T Consensus 210 W~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~-~hp~V~eaaVvgvpd~~~g-e~v~A~Vv~~~- 280 (365)
T PRK09188 210 WLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALK-SDPAVSDVAIALFSLPAKG-VGLYAFVEAEL- 280 (365)
T ss_pred EEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHH-hCCCccEEEEEEEEcCCCC-eEEEEEEEECC-
Confidence 9999999998 6999999999998 88 799999 999995 9999999999999999888 89999999764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHH
Q 004825 666 NYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 720 (728)
Q Consensus 666 ~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 720 (728)
..+.+++++ +++++||. |+|..++++++||+|+|||++|++|++.+.
T Consensus 281 ---~~~~~el~~----~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~ 327 (365)
T PRK09188 281 ---PADEKSLRA----RLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAM 327 (365)
T ss_pred ---CCCHHHHHH----HHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhh
Confidence 345555554 68888999 999999999999999999999999998864
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-15 Score=161.00 Aligned_cols=257 Identities=15% Similarity=0.065 Sum_probs=161.1
Q ss_pred eEEEecCCCCCCCceEEecCcHHHHHHHHHH---HhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcE-EEEeCCCCCc
Q 004825 359 TNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGAS-IALYNGSPLG 434 (728)
Q Consensus 359 a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~-lvl~~~~~~~ 434 (728)
..+..||||||+|-.+.++............ ...++..+++++.+. +..+ .++.++.+... +-.++-..+.
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~--~ly~~~~~~~~~~~~~~l~~~~ 176 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADN--NLYQSVNNRWISLDFFDLLAPF 176 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccCh--hHHHHHHhccceeeecCCCcCH
Confidence 3567899999999999999876533222211 112556666665442 1110 12222222211 2333322345
Q ss_pred chHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccc
Q 004825 435 SGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFI 514 (728)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (728)
+..++.|++++++++.++|+.+..|++.......+ .+++.++++||.+++...+.+.+.++ +++++.||+|| +.+..
T Consensus 177 ~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~~YG~tE-g~la~ 253 (430)
T TIGR02304 177 QAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQIYQATE-GFLAS 253 (430)
T ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeEccCCch-hheEE
Confidence 67899999999999999999999998764333333 46899999999999998888888775 89999999999 54322
Q ss_pred cCCcccccccccccCCCCCceEE--EEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEE
Q 004825 515 TGSLLQAQSLAAFSTPAMGCKLF--ILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRR 592 (728)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~v~--i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~ 592 (728)
.+.. +..-.--...-++ ++|+++++ ..+|+...-.. .-++ .|+
T Consensus 254 eC~~------g~lHl~ed~~~vE~~ivD~~~~~---------~~ViT~L~n~~-----------~PlI---------RYr 298 (430)
T TIGR02304 254 TCRC------GTLHLNEDLVHIEKQYLDEHKRF---------VPIITDFTRTT-----------QPIV---------RYR 298 (430)
T ss_pred ecCC------CCEEEccccEEEEeeEECCCCce---------EEEEecCCCcc-----------ceEE---------eee
Confidence 2211 0011111223344 78876643 33443322110 0122 499
Q ss_pred eCceEEEecC----ce----E-EEEcccCCeeec---Cc--eeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEE
Q 004825 593 HGDVFERTSG----GY----Y-RAHGRADDTMNL---GG--IKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 658 (728)
Q Consensus 593 TGDl~~~~~d----G~----l-~~~GR~d~~iki---~G--~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a 658 (728)
|||++++.++ |. | .+.||.||++++ +| ..|.|..|+.++....+.|.+..++... . ..+..
T Consensus 299 tGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~---~--~~l~v 373 (430)
T TIGR02304 299 LNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG---S--AQLEL 373 (430)
T ss_pred CCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc---C--CeEEE
Confidence 9999998543 32 4 378999999985 34 4569999998865567889998776421 2 45666
Q ss_pred EEEec
Q 004825 659 VVVFK 663 (728)
Q Consensus 659 ~vv~~ 663 (728)
.++..
T Consensus 374 ~~~~~ 378 (430)
T TIGR02304 374 IADCE 378 (430)
T ss_pred EEEeC
Confidence 66653
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-13 Score=148.59 Aligned_cols=490 Identities=14% Similarity=0.073 Sum_probs=296.4
Q ss_pred CCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCcEEEe
Q 004825 188 KRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAY-ALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVS 264 (728)
Q Consensus 188 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~-~L~~~Gv~~gd~Vai~~~~s--~~~vva~lA~lkaG~~~vp 264 (728)
..++-.+|.++-+..|. ..++||..+..|+.+.|+ .|-+-|.+++|+|.++...+ .+++++.++|.-.|.+.+|
T Consensus 105 nhs~~~ta~i~id~kgk---~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp 181 (1363)
T KOG3628|consen 105 NHSATSTAHICIDKKGK---ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVP 181 (1363)
T ss_pred cCCCCCceEEEEcCCCc---eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeecc
Confidence 56778899998887433 569999999999999999 66667999999999999876 6999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccc
Q 004825 265 IADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLK 344 (728)
Q Consensus 265 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (728)
+.+.++.+++..+++-...+++++.....+........ ..+.....+|......+.. .
T Consensus 182 ~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~---------------------~s~~k~v~~w~t~~~k~~~-~ 239 (1363)
T KOG3628|consen 182 LSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSP---------------------VSLAKAVAWWKTNDFKGNY-T 239 (1363)
T ss_pred chhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCc---------------------ccHHHHHHhhhccccccee-e
Confidence 99999999999999999999999987654311111000 0000000000000000000 0
Q ss_pred cCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHH--------------------HHhcCCCCCCEEEecC
Q 004825 345 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA--------------------WCHMDIRKADIVAWPT 404 (728)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~--------------------~~~~~~~~~d~~l~~~ 404 (728)
-.....+..... .+||=||++++|.--||+.+|+ ++...+.. ...++....++++...
T Consensus 240 ~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~ 317 (1363)
T KOG3628|consen 240 KDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNL 317 (1363)
T ss_pred hhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeecc
Confidence 000011111122 7899999999999999999997 43322221 1123445566666555
Q ss_pred CcchhhhH-HHHHHHhhhCcEEEEeCCCC--CcchHHHHHHHhCCcEEEecHHHHHHHHcCC-----------CCCCCCC
Q 004825 405 NLGWMMGP-WLVYASLLNGASIALYNGSP--LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN-----------CIDGYDW 470 (728)
Q Consensus 405 ~~~~~~~~-~~~~~~L~~G~~lvl~~~~~--~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~-----------~~~~~~l 470 (728)
..+-..|+ +.++.+|++|.|.+.++... .+..+..++.+++.+++..--..++.....- .....++
T Consensus 318 ~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~ 397 (1363)
T KOG3628|consen 318 DPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDL 397 (1363)
T ss_pred CcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCc
Confidence 55555555 45889999999999988643 3456888899999999877655555432211 1123578
Q ss_pred cCeeEEEeecCCCCHHHHH----HHHhccCCCCeEecc-----------------cccccccccccCCccc---------
Q 004825 471 SSIRCFGSTGEASNVDEYL----WLMGRALYKPVIEYC-----------------GGTEIGGGFITGSLLQ--------- 520 (728)
Q Consensus 471 ~~lr~i~~gGe~l~~~~~~----~~~~~~~~~~l~n~Y-----------------G~TE~~~~~~~~~~~~--------- 520 (728)
+++|...+.-+.+..+..+ +|.+-.+....--.| +.+|.+....- .+..
T Consensus 398 sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r-~p~~~~~~~~~e~ 476 (1363)
T KOG3628|consen 398 SSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIR-RPEQMADTLPGEG 476 (1363)
T ss_pred cceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhccccc-CcccccccCccce
Confidence 8999999999998877432 333322211111111 11333321110 0000
Q ss_pred ----------------c-----cccccccCCCC-CceEEEEcCC-CCccCCCCCceeEEEEeccccCCCccccCcccccc
Q 004825 521 ----------------A-----QSLAAFSTPAM-GCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 577 (728)
Q Consensus 521 ----------------~-----~~~~~iG~p~~-~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~ 577 (728)
. .....+|.-.+ .+.+.|++++ .+.|..++. |||||.....+..++ .-+..|..
T Consensus 477 ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eV--GEIwVsS~~~~~~~~-al~~~t~~ 553 (1363)
T KOG3628|consen 477 LLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEV--GEIWVSSNSLGKLFY-ALDKQTEN 553 (1363)
T ss_pred eeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcc--eeEEEecCCccccee-eccccccc
Confidence 0 00011222222 4566777766 678888875 999997666654432 22223333
Q ss_pred ccccCC------CCCCceeEEeCceEEEecCceEEEEcccCCee-ecCceeecHHH----------HHHHHhcCCCCeee
Q 004825 578 YFSGMP------SRNGQILRRHGDVFERTSGGYYRAHGRADDTM-NLGGIKVSSVE----------IERICNAVDSNVLE 640 (728)
Q Consensus 578 ~f~~~p------~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~i-ki~G~ri~~~e----------IE~~l~~~~p~V~~ 640 (728)
-|.-.| ......+.|||=+|++.+++ ++++|-.+|++ -+.|.+....+ |+.++ +..+.|-+
T Consensus 554 ~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gk-i~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~-R~v~~VF~ 631 (1363)
T KOG3628|consen 554 TFKATPVESSGKPPSNVPFMRTGLLGFVHNGK-IYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVM-RGVIAVFD 631 (1363)
T ss_pred eEEeeeccccCCCCccchhhhhcceeeeeCCe-EEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHH-hccceEEE
Confidence 333222 12234578999999998655 55555555554 56777765543 34444 46778888
Q ss_pred eEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCccc---ceEEECCCCCCCCCCchhHHHHHH
Q 004825 641 TAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV---SHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 641 ~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P---~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
+.|+- . ++++..++-++ .. ..++-.+++.+-++.-..-+.+- -.++.-+.||||+-|-|.-..+++
T Consensus 632 ~saf~------~-E~~~Vv~~esP-~a---~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~ 700 (1363)
T KOG3628|consen 632 VSAFE------D-EHIVVVVLESP-DA---TEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQ 700 (1363)
T ss_pred Eeeee------c-ceEEEEEEeCc-ch---hhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHH
Confidence 87773 1 55655555444 32 22222223333222221112221 245666789999988899999999
Q ss_pred HHHh
Q 004825 718 QLAQ 721 (728)
Q Consensus 718 ~~~~ 721 (728)
.|.+
T Consensus 701 ~F~~ 704 (1363)
T KOG3628|consen 701 AFLE 704 (1363)
T ss_pred HHHc
Confidence 9876
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-12 Score=101.39 Aligned_cols=70 Identities=37% Similarity=0.547 Sum_probs=59.2
Q ss_pred HHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCccc--ceEEECCC-C
Q 004825 626 EIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV--SHVVPLPS-L 702 (728)
Q Consensus 626 eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P--~~i~~v~~-l 702 (728)
|||++|. +||+|.+|+|++.+++..| +.++||+++ . .+.|+++++++||.||+| ..++.+++ |
T Consensus 1 EIE~~l~-~~~~V~~~~V~~~~d~~~g-~~l~a~vv~-~-----------~~~i~~~~~~~l~~~~~P~~~~~v~~~~~l 66 (73)
T PF13193_consen 1 EIESVLR-QHPGVAEAAVVGVPDEDWG-ERLVAFVVL-D-----------EEEIRDHLRDKLPPYMVPRRIRFVRLDEEL 66 (73)
T ss_dssp HHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEE-H-----------HHHHHHHHHHHS-GGGS-SEEEEEEESSSE
T ss_pred CHHHHHh-cCCCccEEEEEEEEccccc-ccceeEEEe-e-----------ecccccchhhhCCCcceeeEEEEccccCcC
Confidence 8999995 9999999999999988888 999999987 2 155666788899999999 67777788 9
Q ss_pred CCCCCCc
Q 004825 703 PRTATNK 709 (728)
Q Consensus 703 P~t~~GK 709 (728)
|+|+|||
T Consensus 67 P~t~~GK 73 (73)
T PF13193_consen 67 PRTPSGK 73 (73)
T ss_dssp EBETTSS
T ss_pred CCCCCCC
Confidence 9999999
|
... |
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.7e-12 Score=105.68 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=51.0
Q ss_pred CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC----------CCCccCChhhhhhccHHHHHHHhccccccCC-C
Q 004825 44 ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD----------PPAWIPDPEAAKVTNVGKLLQTRGEEFLGSG-Y 112 (728)
Q Consensus 44 ~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y 112 (728)
+||+|||++||++|+++|+.+++|+ ||++|++.+. .....+.....+++||.+.+.+.++++.+.+ |
T Consensus 1 ~hq~~Pf~~lv~~l~~~r~~~~~pl--fqv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~l~~~~~~~~l~~~~~Y 78 (91)
T PF13745_consen 1 EHQDYPFERLVEALGPPRDPSRNPL--FQVMFNYQNFSQSALDLGGLRLEPIPLENGGAKFDLTLEVREDGDGLRLQLEY 78 (91)
T ss_dssp -T--S-HHHHHHHT-----TTS-SS---SEEEEEE----S----SSEEEEE-SS--SB-SSSEEEEEEE-SS-EEEEEEE
T ss_pred CCccCCHHHHHHHhCcccCCccccc--cCeEEEEEecccccccCCCceEEEeeccccceeeeEEEEEEecCCeEEEEEEE
Confidence 6999999999999999999999999 9999999211 1112334457799999999999999999999 9
Q ss_pred CCCCCCHHHHHHHHhhCH
Q 004825 113 KDPISSFSNFQEFSVSNP 130 (728)
Q Consensus 113 ~~~~~~~~~~~~~ti~~~ 130 (728)
++ ++|++.+|++|
T Consensus 79 ~~-----~lf~~~ti~~~ 91 (91)
T PF13745_consen 79 NT-----DLFSEETIERM 91 (91)
T ss_dssp ET-----TT--HHHHHHH
T ss_pred Eh-----HhCCHHHHhcC
Confidence 99 99999999875
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-07 Score=97.88 Aligned_cols=236 Identities=16% Similarity=0.123 Sum_probs=130.2
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHHHHH---HHHhcCCCCCC--EEEecCCcchh---hh--HHHHHHHhhhCc
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD---AWCHMDIRKAD--IVAWPTNLGWM---MG--PWLVYASLLNGA 423 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d--~~l~~~~~~~~---~~--~~~~~~~L~~G~ 423 (728)
+.+++..++-||||||.|--+.+.+.++...... ....+...... .++...|-... ++ .......+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 4566777899999999985555655544443322 22323222222 23333332211 11 122333445555
Q ss_pred EEEEeC-CCCCcchHHHHH----HHhCCcEEEecHHHHHHHHcCCCCC--CCCCc-CeeEEEeec------CCCCHHH-H
Q 004825 424 SIALYN-GSPLGSGFAKFV----QDAKVTMLGVVPSIVRTWKSTNCID--GYDWS-SIRCFGSTG------EASNVDE-Y 488 (728)
Q Consensus 424 ~lvl~~-~~~~~~~l~~~i----~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~l~-~lr~i~~gG------e~l~~~~-~ 488 (728)
. .+.+ ...+.+.+.+.+ .+.++..+++.|.++-.++...... ...|+ ..+.+-.|| |.++.+. .
T Consensus 167 ~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~ 245 (365)
T PF04443_consen 167 R-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFY 245 (365)
T ss_pred e-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHH
Confidence 5 3333 334555555444 3456777888777666555432222 23343 345555554 5576554 4
Q ss_pred HHHHhccCC---CCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCC-CCccCCCCCceeEEEEeccccC
Q 004825 489 LWLMGRALY---KPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFG 564 (728)
Q Consensus 489 ~~~~~~~~~---~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~ 564 (728)
+.+.+.++- ..+++.||+||.......+.... .++|-. +.|.|++ .+++|.|++ |-|-+-.....
T Consensus 246 ~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~--------~~~p~w-V~iRDp~tl~~~~~Ge~--Gli~vidl~~~ 314 (365)
T PF04443_consen 246 ARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH--------FHVPPW-VIIRDPETLEPLPPGET--GLIQVIDLANT 314 (365)
T ss_pred HHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc--------ccCCCe-EEEECCCCCcCCCCCCe--eEEEEEccccc
Confidence 555565653 36999999999776443331110 122323 7777876 789999987 88876333211
Q ss_pred CCccccCccccccccccCCCCCCceeEEeCceEEEecC--------ceEEEEcccCCeeecCceeec
Q 004825 565 ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG--------GYYRAHGRADDTMNLGGIKVS 623 (728)
Q Consensus 565 ~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~d--------G~l~~~GR~d~~iki~G~ri~ 623 (728)
. .++ ..-|.|+|.+..+ .+++++||.+.- .+||-...
T Consensus 315 s-------------------~p~--~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~a-e~RGCs~~ 359 (365)
T PF04443_consen 315 S-------------------YPG--FILTEDLGVLHGDDDCGCRKGKYFEVLGRADGA-EIRGCSLT 359 (365)
T ss_pred C-------------------CCc--EEEEcceeeecCCCCCCCccCCEEEEEeCCCCC-ccCCcHHH
Confidence 0 123 3569999988654 279999998743 35665543
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.39 E-value=3e-06 Score=94.68 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=85.8
Q ss_pred CcCeeEEEeecCCCCHHHHHHHHhccCCCCe-EecccccccccccccCCcccccccccccCCCCC-ceEEEEcCC-----
Q 004825 470 WSSIRCFGSTGEASNVDEYLWLMGRALYKPV-IEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMG-CKLFILGND----- 542 (728)
Q Consensus 470 l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l-~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~-~~v~i~d~~----- 542 (728)
+|+|+.|.+.+..-...-..++++.++++++ ...|++||+-+.+-.. + ......=.|-.+ .+..=+|+.
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~---~~~~~~l~~~~~ffEFip~~~~~~~~~ 341 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-P---EDPGYVLAPDSGFFEFIPVDEDEQNPS 341 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--C---CC--EEE-TTSSEEEEEE-STT-----
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-C---CCCceEeecCCeEEEEEeccCCccccc
Confidence 5789966655544334455667777777654 4799999965432221 1 111111112222 122222221
Q ss_pred --CCccC-----CCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEec--Cc--eEEEEccc
Q 004825 543 --GCPIP-----QNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTS--GG--YYRAHGRA 611 (728)
Q Consensus 543 --g~~vp-----~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~--dG--~l~~~GR~ 611 (728)
.+.+. .|+. =||+|+.. + |=-.|+.||+++... ++ .|+|+||.
T Consensus 342 ~~~~~l~~~ele~G~~--YelviTt~--~----------------------GLyRY~iGDvVrv~gf~~~~P~i~F~~R~ 395 (528)
T PF03321_consen 342 EQPKTLLLHELEVGEE--YELVITTN--S----------------------GLYRYRIGDVVRVTGFYNQTPRIEFVGRR 395 (528)
T ss_dssp --SSSEEGGG--TT-E--EEEEEEST--T----------------------S-SSEEECEEEEEEEEETTEEEEEEEEET
T ss_pred CCCceecHHHhcCCCe--EEEEEecc--c----------------------ceeeeecCCEEEEeeccCCCcEEEEeccC
Confidence 23332 3332 44555322 1 111499999999853 44 79999999
Q ss_pred CCeeecCceeecHHHHHHHHhcC----CCCeeeeEEEeecCCCCCceEEEEEEEecC
Q 004825 612 DDTMNLGGIKVSSVEIERICNAV----DSNVLETAAIGVPPPDGGPEQLTIVVVFKD 664 (728)
Q Consensus 612 d~~iki~G~ri~~~eIE~~l~~~----~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~ 664 (728)
+.++++.|+++.-.+|+.++.+. .-.+.+..+......... ..-+.|+.+..
T Consensus 396 ~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~-~~Y~~~~e~~~ 451 (528)
T PF03321_consen 396 GQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNP-PHYVLFWELEG 451 (528)
T ss_dssp TEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSS-BEEEEEEEECS
T ss_pred CceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCC-CceEEEEEeCC
Confidence 99999999999999999999643 234667666654222222 45566666654
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0022 Score=72.25 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=38.8
Q ss_pred eEEeCceEEEec----CceEEEEcccCCeeecCceeecHHHHHHHHhc
Q 004825 590 LRRHGDVFERTS----GGYYRAHGRADDTMNLGGIKVSSVEIERICNA 633 (728)
Q Consensus 590 ~y~TGDl~~~~~----dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~ 633 (728)
.|+.||.++... --.|.|+||.+..+++.|+++.-.+++.+|.+
T Consensus 409 RY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 409 RYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred EeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 499999999853 35799999999999999999999999998864
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.005 Score=68.64 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=38.2
Q ss_pred eEEeCceEEEe----cCceEEEEcccCCeeecCceeecHHHHHHHHhc
Q 004825 590 LRRHGDVFERT----SGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 633 (728)
Q Consensus 590 ~y~TGDl~~~~----~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~ 633 (728)
.||.||+++.. ..-.+.|++|.+.+..+.|.+.+-.++..++.+
T Consensus 422 RYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 422 RYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN 469 (612)
T ss_pred EEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence 59999998874 456799999999999999999999999888754
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0096 Score=66.61 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=38.4
Q ss_pred eEEeCceEEE----ecCceEEEEcccCCeeecCceeecHHHHHHHHhc
Q 004825 590 LRRHGDVFER----TSGGYYRAHGRADDTMNLGGIKVSSVEIERICNA 633 (728)
Q Consensus 590 ~y~TGDl~~~----~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~ 633 (728)
.||.||+++. +.--.+.|++|.+.+..+.|.+..-.++..++.+
T Consensus 416 RYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~ 463 (606)
T PLN02247 416 RYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQ 463 (606)
T ss_pred EEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHH
Confidence 5899999887 4457899999999999999999999999888853
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00049 Score=58.00 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=56.2
Q ss_pred ceeecHHHHHHHHhcCCCCee-eeEEEeecCCCCCceEEEEEEEecCCCCCC--CCHHHHHHHHHHHHHhhCCCCcccce
Q 004825 619 GIKVSSVEIERICNAVDSNVL-ETAAIGVPPPDGGPEQLTIVVVFKDSNYTP--PDLNQLRMSFNSAVQKKLNPLFKVSH 695 (728)
Q Consensus 619 G~ri~~~eIE~~l~~~~p~V~-~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~--~~~~~l~~~l~~~l~~~Lp~~~~P~~ 695 (728)
|.+|+|..||++|. ..|++. +..++.. .... .+.+...|...+ +... .+..++.+.|.+.+++.|.-.. -..
T Consensus 1 GvnvfP~~Ie~vl~-~~~~~~~~y~i~v~-~~~~-~D~l~v~vE~~~-~~~~~~~~~~~l~~~i~~~lk~~lgv~~-~V~ 75 (96)
T PF14535_consen 1 GVNVFPSQIEEVLR-EFPEVSPEYQIVVT-REGG-LDELTVRVELRP-GFSDDAEDLEALAERIAERLKERLGVRP-EVE 75 (96)
T ss_dssp TEEE-HHHHHHHHC-TSTTEEEEEEEEEE-EETT-EEEEEEEEEEST-TCCTTHHHHHHHHHHHHHHHHHHHSS-E-EEE
T ss_pred CcEECHHHHHHHHH-hCcCCCCcEEEEEE-cCCC-CcEEEEEEEECC-ccCcchHHHHHHHHHHHHHHHhhcCceE-EEE
Confidence 78999999999995 899998 5544443 3333 378888888877 4311 1357788899999999886322 234
Q ss_pred EEECCCCCCCCCCchhH
Q 004825 696 VVPLPSLPRTATNKVMR 712 (728)
Q Consensus 696 i~~v~~lP~t~~GKvdR 712 (728)
++...+||++ .||..|
T Consensus 76 lv~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 76 LVPPGTLPRS-EGKAKR 91 (96)
T ss_dssp EE-TT-S----SSSS-S
T ss_pred EECCCCccCC-CCcceE
Confidence 5556689998 688765
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.31 Score=52.29 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=77.5
Q ss_pred CCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCcEEEecCC
Q 004825 192 DDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV--NSVVIYLAIVLAGYIVVSIAD 267 (728)
Q Consensus 192 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~--~~vva~lA~lkaG~~~vpl~p 267 (728)
+++..++...| .+|. ..-+|+.++...+..+|+.|...|..+||+|.++..-+. .-+-.-+|+.++|++++|+.+
T Consensus 90 ~~i~~ihaSSG-TTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~ 168 (438)
T COG1541 90 EEIVRIHASSG-TTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG 168 (438)
T ss_pred cceEEEEccCC-CCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC
Confidence 34444554443 2333 356899999999999999999999999999998877222 125677899999999999988
Q ss_pred CCCHHHHHHHHHhcCceEEEEecce
Q 004825 268 SFASLEISARLRISKAKAIFTQDLI 292 (728)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~il~~~~~ 292 (728)
+ ..++...+++|.++.+|.+..++
T Consensus 169 g-~~~~~~~l~~df~~tvI~~tps~ 192 (438)
T COG1541 169 G-NTERQLELMKDFKPTVIAATPSY 192 (438)
T ss_pred c-cHHHHHHHHHhcCCcEEEEChHH
Confidence 3 46777889999999999998865
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=82.40 E-value=10 Score=41.57 Aligned_cols=100 Identities=15% Similarity=0.073 Sum_probs=70.6
Q ss_pred CCCeEEEEeccCCCCCCc--eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCcEEEecC
Q 004825 191 LDDIVIRWCDEGDGGLPV--KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV--NSVVIYLAIVLAGYIVVSIA 266 (728)
Q Consensus 191 pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~--~~vva~lA~lkaG~~~vpl~ 266 (728)
++.++.+....| .+|.. -.+|...+......+++.+...|+++||++..+.+.+. ......++.++.|+..++++
T Consensus 74 ~~~~~~~~~TSG-TTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 74 REQVVRIHASSG-TTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred hHHcEEEEECCC-CCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 345555533332 33332 34678888777777888888889999999987765543 22334567889999999997
Q ss_pred CCCCHHHHHHHHHhcCceEEEEecce
Q 004825 267 DSFASLEISARLRISKAKAIFTQDLI 292 (728)
Q Consensus 267 p~~~~~~l~~~l~~~~~~~il~~~~~ 292 (728)
+.. .+++...|++.++.++++....
T Consensus 153 ~~~-~~~~~~~i~~~~~t~l~~~Ps~ 177 (422)
T TIGR02155 153 GGQ-TEKQVQLIQDFKPDIIMVTPSY 177 (422)
T ss_pred CCC-HHHHHHHHHHHCCCEEEEcHHH
Confidence 765 4778889999999999887643
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=82.17 E-value=8.5 Score=42.51 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=68.5
Q ss_pred CCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCcEEEecCC
Q 004825 192 DDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS--VVIYLAIVLAGYIVVSIAD 267 (728)
Q Consensus 192 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~--vva~lA~lkaG~~~vpl~p 267 (728)
+.++.++...| .+|. ..-+|..++...+...++.+...|+.+||++.++.+-+... ....+++.+.|+..+|...
T Consensus 86 ~~i~~i~~TSG-TTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~ 164 (445)
T TIGR03335 86 KDIYTIHETSG-TSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK 164 (445)
T ss_pred HHeEEEEeCCC-CCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc
Confidence 45665554332 2333 24579999998888889998889999999999998766532 2345788899999887653
Q ss_pred CCCHHHHHHHHHhcCceEEEEec
Q 004825 268 SFASLEISARLRISKAKAIFTQD 290 (728)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~il~~~ 290 (728)
.+....++++.++.+++...
T Consensus 165 ---~~~~~~~i~~~~~t~l~~~p 184 (445)
T TIGR03335 165 ---CTFPIRIIESYRPTGIVASV 184 (445)
T ss_pred ---hhHHHHHHHHhCCCEEEECH
Confidence 24456788999999887654
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 728 | ||||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 1e-41 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 1e-41 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 1e-41 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 2e-41 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 3e-41 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 6e-41 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 1e-40 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 2e-31 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 4e-14 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 4e-13 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 1e-08 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 2e-08 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 1e-07 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-07 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 6e-07 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 2e-06 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 3e-06 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 3e-06 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 3e-06 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 3e-06 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 3e-05 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 5e-05 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 8e-05 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 3e-04 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 4e-04 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 5e-04 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 6e-04 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 6e-04 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 8e-04 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 8e-04 |
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 5e-47
Identities = 122/592 (20%), Positives = 215/592 (36%), Gaps = 91/592 (15%)
Query: 171 LPGAFVNPAKNCL-----SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAY 225
+P F N A + L + + + W + G +EL A
Sbjct: 33 VPAKF-NFASDVLDHWADMEKAGKRPPSPALWWVNG-KG--KELMWNFRELSENSQQAAN 88
Query: 226 AL-NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAK 284
L A GL +G +A+ +P ++ L + AG I + S +I RL++SKAK
Sbjct: 89 VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAK 148
Query: 285 AIFTQDLIIRGDKSIPLYRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDFLERVRKL 343
AI GD+ I + ++ P L I + S DG +++ L
Sbjct: 149 AIVA------GDEVIQEVDTVASECPSLRIKLLVSEKS-----CDGWLNFKKLLNE---- 193
Query: 344 KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAW- 402
VE + + I F+SGT+G PK + ++ A ++ +DI+ W
Sbjct: 194 ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIM-WT 252
Query: 403 PTNLGWMMGPW-LVYASLLNGASIALYNGSPLGSG-FAKFVQDAKVTMLGVVPSIVRTWK 460
++ GW++ + GA ++ K + + + P + R
Sbjct: 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLL 312
Query: 461 STNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFIT----- 515
+ + Y + ++ + GE+ + + E G TE G +
Sbjct: 313 QQD-LSSYKFPHLQNCVTVGESLLPETLENWR-AQTGLDIRESYGQTETGLTCMVSKTMK 370
Query: 516 ---GSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 572
G + T A + I+ + G +P G++ + +
Sbjct: 371 IKPGYM---------GTAASCYDVQIIDDKGNVLPPGT--EGDIGIR----------VKP 409
Query: 573 NHYDVYFSG---MPSRNGQILRRH----GDVFERTSGGYYRAHGRADDTMNLGGIKVSSV 625
FSG P + +R GD + GY++ GRADD +N G ++
Sbjct: 410 IRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPS 469
Query: 626 EIERICNAVDSN--VLETAAIGVPPPDGGPEQLTIV---VVFKDSNYTPPDLNQLRMSFN 680
E+E NA+ + V+ETA I PD P + +V VV + D QL
Sbjct: 470 EVE---NALMEHPAVVETAVISS--PD--PVRGEVVKAFVVLAS-QFLSHDPEQLTKELQ 521
Query: 681 SAVQKKLNPLFKVSHVVP-----LPSLPRTATNKVMRRVLRKQLAQLDQNSK 727
V+ P + P + +LP+T T K+ R LR + ++ ++
Sbjct: 522 QHVKSVTAP-----YKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMSGKAR 568
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 3e-46
Identities = 121/568 (21%), Positives = 199/568 (35%), Gaps = 74/568 (13%)
Query: 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNA 229
P A N A +N R+ S T EL A AL
Sbjct: 17 EAPPALFNFAAYLFRLNETRA-GKTAYIDDT--------GSTTYGELEERARRFASALRT 67
Query: 230 LGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQ 289
LG+ I + M V V +L + AG + V + L S A+A+
Sbjct: 68 LGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIAS 127
Query: 290 DLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 349
+ + A R+ + E +
Sbjct: 128 GAL------VQNVTQALESAEHDGCQLIVSQP-----RESEPRLAPLFEELIDAAAPAAK 176
Query: 350 AVEQPVE--AFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIVAWPTN 405
A + AF L+SSG+TG+PK T+A + A+ + + I + D+V
Sbjct: 177 AAATGCDDIAF--WLYSSGSTGKPKGTVHTHANLY-WTAELYAKPILGIAENDVVFSAAK 233
Query: 406 LGWMMGPW-LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC 464
L + G + L GA+ L P + + + T+ VP++ +
Sbjct: 234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN 293
Query: 465 IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY-KPVIEYCGGTEIGGGFITGSLLQAQS 523
+ +IR S GEA + A + +++ G TE+ F++ +
Sbjct: 294 LPARADVAIRICTSAGEALPREIGER--FTAHFGCEILDGIGSTEMLHIFLSNRAGAVEY 351
Query: 524 LAAFSTPAMGCKLFILGNDGCPIPQNVPG-MGELALS-PLIF-GASSTLLNANHYDVYFS 580
P G ++ + G +P G +G+L + P Y+
Sbjct: 352 GTT-GRPVPGYEIELRDEAGHAVP---DGEVGDLYIKGPSAAVM-------------YW- 393
Query: 581 GMPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 636
++ R GD + R G Y GR+DD + + G VS VE+E + D+
Sbjct: 394 NNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDA 453
Query: 637 NVLETAAIGVPPPDGGPEQLTIV---VVFKDSNYTPPDL--NQLRMSFNSAVQKKLNPLF 691
VLE A +GV VV K + P ++ +L+ +F V+ +L P
Sbjct: 454 -VLEAAVVGVDHGGLV-----KTRAFVVLKR-EFAPSEILAEELK-AF---VKDRLAP-H 501
Query: 692 KV-SHVVPLPSLPRTATNKVMRRVLRKQ 718
K +V + LP+TAT K+ R LR+Q
Sbjct: 502 KYPRDIVFVDDLPKTATGKIQRFKLREQ 529
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 5e-45
Identities = 170/661 (25%), Positives = 268/661 (40%), Gaps = 139/661 (21%)
Query: 124 EFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCL 183
+ S+++P+ +W + + P Q + N N +W +N A NCL
Sbjct: 29 KQSINDPDTFWGEQGKILD--WITPYQKVK----NTSFAPGNVSIKWYEDGTLNLAANCL 82
Query: 184 SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMP 243
+ + + D I W EGD K ++ +EL +V A L LG+ KG +AI MP
Sbjct: 83 DRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMP 140
Query: 244 MNVNSVVIYLA---------IVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIR 294
M + V LA ++ G+ ++A + S ++ + T D +R
Sbjct: 141 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAG---------CIIDSSSRLVITADEGVR 191
Query: 295 GDKSIPLYRVIDAQAPLA--------IVIPAKGSSFSMKLRDG-DISWLDFLERVRKLKE 345
+SIPL + +D IV+ GS + +G D+ W D +E+ +
Sbjct: 192 AGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ--EGRDLWWRDLIEKASPEHQ 249
Query: 346 NEFAAVEQPVEAFTNILFSSGTTGEPKAIP--------WTNATPFKAAADA------WCH 391
E E P+ F IL++SG+TG+PK + + T FK D WC
Sbjct: 250 PEAMNAEDPL--F--ILYTSGSTGKPKGVLHTTGGYLVYAATT-FKYVFDYHPGDIYWC- 303
Query: 392 MDIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVT 447
AD+ GW+ G +L+Y L GA+ ++ G P A+ V +V
Sbjct: 304 ----TADV-------GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352
Query: 448 MLGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 505
+L P+ +R + I+G D SS+R GS GE N + + W Y I G
Sbjct: 353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEW------YWKKI---G 403
Query: 506 G-----------TEIGGGFIT----------GSLLQAQSLAAFSTPAMGCKLFILGNDGC 544
TE GG IT GS + P G + ++ N+G
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA---------TRPFFGVQPALVDNEGH 454
Query: 545 PIPQNVPGMGELALS---PLIFGASSTLLNANH---YDVYFSGMPSRNGQILRRHGDVFE 598
P G L ++ P G + TL +H YFS GD
Sbjct: 455 PQEGATEGN--LVITDSWP---GQARTLFG-DHERFEQTYFSTFK---NMYFS--GDGAR 503
Query: 599 RTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDGGPEQL 656
R GYY GR DD +N+ G ++ + EIE +A+ ++ + E A +G+P G + +
Sbjct: 504 RDEDGYYWITGRVDDVLNVSGHRLGTAEIE---SALVAHPKIAEAAVVGIPHAIKG-QAI 559
Query: 657 TIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 716
V P +L + V+K++ PL + SLP+T + K+MRR+LR
Sbjct: 560 YAYVTLNHG-EEPSP--ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Query: 717 K 717
K
Sbjct: 617 K 617
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 5e-43
Identities = 159/678 (23%), Positives = 264/678 (38%), Gaps = 134/678 (19%)
Query: 113 KDPISSFSNFQEF---SVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQ 169
+ ++Q S+ +P ++ + + P + +P S
Sbjct: 17 RGSHMGLQDYQRLHKESIEDPAKFFGSKATQFLNWSK-PFDKVFIPDPK-TGRPSFQNNA 74
Query: 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYAL-N 228
W +N NC+ ++ ++ + I + EGD S+T KEL EV VA L
Sbjct: 75 WFLNGQLNACYNCVDRHALKTPNKKAIIF--EGDEPGQGYSITYKELLEEVCQVAQVLTY 132
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLA---------IVLAGYIVVSIADSFASLEISARLR 279
++G+ KG +A+ MPM +++ LA +V AG+ S+ D R+
Sbjct: 133 SMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRD---------RIN 183
Query: 280 ISKAKAIFTQDLIIRGDKSIPLYRVIDA---QAPLA---IVIPAKGSSFSMKLRDG-DIS 332
+K + T D RG K I R++D + P +V + S+ D+
Sbjct: 184 DGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP-SVAFHAPRDLD 242
Query: 333 WLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIP--------WTNATPFKA 384
W ++ + E P+ F +L++SG+TG PK + T +
Sbjct: 243 WATEKKKYKTYYPCTPVDSEDPL--F--LLYTSGSTGAPKGVQHSTAGYLLGALLT-MRY 297
Query: 385 AADA------WCHMDIRKADIVAWPTNLGWMMG-PWLVYASLLNGASIALYNGSPLGSGF 437
D + DI GW+ G ++VY LL G + ++ G+P +
Sbjct: 298 TFDTHQEDVFFT-----AGDI-------GWITGHTYVVYGPLLYGCATLVFEGTPAYPNY 345
Query: 438 AKF---VQDAKVTMLGVVPSIVRTWKS--TNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 492
+++ + + KVT V P+ +R K + I+ + S+RC GS GE + + W
Sbjct: 346 SRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEW-- 403
Query: 493 GRALYKPVIEYCGG-----------TEIGGGFITGSLLQAQSLAAFSTP-----AM---- 532
Y I G TE G +T LA TP A
Sbjct: 404 ----YSEKI---GKNEIPIVDTYWQTESGSHLVTP-------LAGGVTPMKPGSASFPFF 449
Query: 533 GCKLFIL-GNDGCPIPQNVPGMGELALS---PLIFGASSTLLNANH---YDVYFSGMPSR 585
G +L N G + + G LA+ P + T+ NH D Y + P
Sbjct: 450 GIDAVVLDPNTGEELNTS-HAEGVLAVKAAWP---SFARTIWK-NHDRYLDTYLNPYP-- 502
Query: 586 NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAA 643
G GD + GY GR DD +N+ G ++S+ EIE A+ + V E A
Sbjct: 503 -GYYFT--GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE---AAIIEDPIVAECAV 556
Query: 644 IGVPPPDGGPEQLTIVVVFKD----SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPL 699
+G G + + VV K+ S T +L ++ V+K + P ++ +
Sbjct: 557 VGFNDDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILV 615
Query: 700 PSLPRTATNKVMRRVLRK 717
LP+T + K+MRR+LRK
Sbjct: 616 DDLPKTRSGKIMRRILRK 633
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 5e-40
Identities = 118/581 (20%), Positives = 203/581 (34%), Gaps = 83/581 (14%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+ L N A + + V ++ S + + + WCD+ G K T K+L+ A
Sbjct: 48 KILVPENFNFAYDVVDVYARDSPEKLAMIWCDD-YGN--EKIFTFKDLKYYSDKAANFFV 104
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
G+ KG + + + + L + G I V + +I R+ + K I
Sbjct: 105 KHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVC 164
Query: 289 QDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEF 348
+ +D IP K + + +G I + LE + E
Sbjct: 165 IA-------EDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPT 217
Query: 349 AAVEQPVE--AFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAW-PTN 405
V E + FSSGT G PK + N P A ++ + + +
Sbjct: 218 GEVSTKNEDICL--VYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLH-YTVAD 274
Query: 406 LGWMMGPW-LVYASLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN 463
GW W +Y + G ++ +Y+ + VT P+I R +
Sbjct: 275 SGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED 334
Query: 464 CIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQS 523
+ Y++S+++ GE N + + + ++E G TE + +
Sbjct: 335 -LSHYNFSTLKYAVVAGEPLNPEVFNRFL-EFTGIKLMEGFGQTETV--------VTIAT 384
Query: 524 LAAFST-------PAMGCKLFILGNDGCPIPQNVPGMGELAL-----SPLIFGASSTLLN 571
P G K+ ++ DG GE+ + P+
Sbjct: 385 FPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGE--EGEIVINTMEGKPVGL-------- 434
Query: 572 ANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEI 627
+ Y P R + GD+ GY GRADD + G KV E+
Sbjct: 435 ---FVHYG-KDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEV 490
Query: 628 ERICNAVDSN--VLETAAIGVPPPDGGPEQLTIV---VVFKDSNYTPPDLNQLRMSFNSA 682
E +A+ + VLE A GV PD P + ++ +V +YTP D L+
Sbjct: 491 E---SALIQHPAVLECAITGV--PD--PVRGQVIKATIVLTK-DYTPSD--SLKNELQDH 540
Query: 683 VQKKLNPLFKVSHVVP-----LPSLPRTATNKVMRRVLRKQ 718
V+ P + P +P LP+T + K+ R +R +
Sbjct: 541 VKNVTAP-----YKYPRIIEFVPELPKTISGKIRRVEIRDK 576
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 4e-33
Identities = 103/549 (18%), Positives = 176/549 (32%), Gaps = 97/549 (17%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSI 265
+ ++ +EL +A +L G+ G + + N + + A++ G V
Sbjct: 49 RQLSYRELNQAADNLACSLRRQGIKPGETALVQLG---NVAELYITFFALLKLGVAPVLA 105
Query: 266 ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMK 325
S E++A + + L + + + +V
Sbjct: 106 LFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND------ 159
Query: 326 LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT------NA 379
G+ + D + +F A P + S GTTG PK IP T +
Sbjct: 160 --SGEHNLQDAINHPA----EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSV 213
Query: 380 TPFKAAADAWCHMDIRKADIVAWPT----NLGWMMGPWLVYASLLNGASIALYNG-SPLG 434
+ + + N L G ++ L S
Sbjct: 214 R---RSVEIC---QFTQQTRYLCAIPAAHNYAMSSP--GSLGVFLAGGTVVLAADPSA-T 264
Query: 435 SGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCF---GSTGEASNVDEYL 489
F ++ +V + +VP V W +S++ G+ A+
Sbjct: 265 LCFP-LIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIP 323
Query: 490 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLF------ILGNDG 543
+G L + G E G + + L + T G + + +G
Sbjct: 324 AEIGCQL---QQVF-GMAE---GLVNYTRLDDSAEKIIHT--QGYPMCPDDEVWVADAEG 374
Query: 544 CPIPQNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRR----H-GDV 596
P+PQ G L P F G Y+ P N GD+
Sbjct: 375 NPLPQGEV--GRLMTRGPYTFRG-------------YY-KSPQHNASAFDANGFYCSGDL 418
Query: 597 FERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVLETAAIGVPPPDGGPE 654
GY GR D +N GG K+++ EIE N + V+ A + + G E
Sbjct: 419 ISIDPEGYITVQGREKDQINRGGEKIAAEEIE---NLLLRHPAVIYAALVSMEDELMG-E 474
Query: 655 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRR 713
+ +V K+ P Q+R F ++ + FK+ V + SLP TA KV ++
Sbjct: 475 KSCAYLVVKE----PLRAVQVR-RF--LREQGIAE-FKLPDRVECVDSLPLTAVGKVDKK 526
Query: 714 VLRKQLAQL 722
LR+ LA
Sbjct: 527 QLRQWLASR 535
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-31
Identities = 104/539 (19%), Positives = 179/539 (33%), Gaps = 82/539 (15%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSI 265
+ +EL +A LG+ + + + +P N + A+ G + V
Sbjct: 49 THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP---NIKEFFEVIFALFRLGALPVFA 105
Query: 266 ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMK 325
S S EI+ ++A A D D +V L +I A +
Sbjct: 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA----- 160
Query: 326 LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAA 385
+ + D KL E + + V + S G+TG K IP T+ +
Sbjct: 161 --EEFLPLEDLHTEPVKLPEVKSSDV-------AFLQLSGGSTGLSKLIPRTHDDYIYSL 211
Query: 386 ADAWCHMDIRKADIVAWPT----NLGWMMGPWLVYASLLNGASIALYNG-SPLGSGFAKF 440
+ + + + N L L G + L SP F
Sbjct: 212 KRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL--GVLYAGGRVVLSPSPSPD-DAFP-L 267
Query: 441 VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF---GSTGEASNVDEYLWLMGRALY 497
++ KVT+ +VP + W D SS++ G+ A + G L
Sbjct: 268 IEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTL- 326
Query: 498 KPVIEYCGGTEIGGGFITGSLLQAQSLAAFST------PAMGCKLFILGNDGCPIPQNVP 551
+ G E G + + L +T P + + + +
Sbjct: 327 --QQVF-GMAE---GLVNYTRLDDPEEIIVNTQGKPMSPYDESR--VWDDHDRDVKPGET 378
Query: 552 GMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRR----H-GDVFERTSGGY 604
G L P G Y+ N GD+ T GY
Sbjct: 379 --GHLLTRGPYTIRG-------------YY-KAEEHNAASFTEDGFYRTGDIVRLTRDGY 422
Query: 605 YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD 664
GRA D +N GG KV++ E+E A + V + A + +P G E+ + ++ +D
Sbjct: 423 IVVEGRAKDQINRGGEKVAAEEVENHLLAHPA-VHDAAMVSMPDQFLG-ERSCVFIIPRD 480
Query: 665 SNYTPPDLNQ-LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQ 721
+L LR ++ L +K+ V + S P+T KV ++ LR+ +++
Sbjct: 481 EAPKAAELKAFLR-------ERGLAA-YKIPDRVEFVESFPQTGVGKVSKKALREAISE 531
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 4e-31
Identities = 108/550 (19%), Positives = 185/550 (33%), Gaps = 100/550 (18%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSI 265
+ ++ EL +A L GL KG + +P N +++ A++ AG +V++
Sbjct: 54 RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLP---NVAEFYIVFFALLKAGVVVLNA 110
Query: 266 ADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMK 325
S E++A ++ + K + + + + D I++
Sbjct: 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQ----- 165
Query: 326 LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT------NA 379
D LD++E E P + S G+TG PK IP T +
Sbjct: 166 --ATDFGLLDWIETPA---ETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSV 220
Query: 380 TPFKAAADAWCHMDIRKADIVAWPT----NLGWMMGPWLVYASLLNGASIALYNGSPLGS 435
A+A+ + + N L G + + +P
Sbjct: 221 R---ASAEI---CGLNSNTRLLCALPAPHNFMLSSP--GALGVLHAGGCVVM---APNPE 269
Query: 436 GFAKF--VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493
F +Q +V M +VPS V W S++ G AS + +
Sbjct: 270 PLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGG-ASFPESLARQVP 328
Query: 494 RALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFST------PAMGCKLFILGNDGCPIP 547
L + + G E G + + L F+T K I+ +P
Sbjct: 329 EVLNCKLQQVFGMAE---GLVNYTRLDDSDEQIFTTQGRPISSDDEIK--IVDEQYREVP 383
Query: 548 QNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRR----H-GDVFERT 600
+ G LA P F G Y+ P N Q+ + GD+ +RT
Sbjct: 384 EGEI--GMLATRGPYTFCG-------------YY-QSPEHNSQVFDEDNYYYSGDLVQRT 427
Query: 601 SGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVL-------ETAAIGVPPPDGGP 653
G R GR D +N GG K++S EIE ++ A + + G
Sbjct: 428 PDGNLRVVGRIKDQINRGGEKIASEEIE--------KLILLHPEVMHAALVAIVDEQFG- 478
Query: 654 EQLTIVVVFKDSNYTPPDLNQ-LRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVM 711
E+ +V ++ L + L + + +K+ + + SLP TA KV
Sbjct: 479 EKSCAFIVSRNPELKAVVLRRHLM-------ELGIAQ-YKLPDQIKLIESLPLTAVGKVD 530
Query: 712 RRVLRKQLAQ 721
++ LR L
Sbjct: 531 KKQLRSILNT 540
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 8e-31
Identities = 102/564 (18%), Positives = 189/564 (33%), Gaps = 106/564 (18%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
++T E +A A+ GL+ I + ++ + L + G V D
Sbjct: 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 108
Query: 269 FASLEISARLRISKAKAIFTQDL----IIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSM 324
+ E+ + IS+ +F I+ K +P+ + I I++ +K
Sbjct: 109 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI-------IIMDSKTDY--- 158
Query: 325 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTN---ILFSSGTTGEPKAIPWTNA-- 379
G S F+ NE+ V + + I+ SSG+TG PK + +
Sbjct: 159 ---QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTA 215
Query: 380 -TPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFA 438
F A D I + G + L+ G + L
Sbjct: 216 CVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL---------MY 266
Query: 439 KF--------VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLW 490
+F +QD K+ +VP++ + + ID YD S++ S G A
Sbjct: 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS-GGAP------- 318
Query: 491 LMGRALYKPVIEYCGGTEIGGGF--------ITGSLLQAQSLAAFSTPAMGCKLFIL-GN 541
+ + + + V + I G+ I + A + ++ +
Sbjct: 319 -LSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLD 377
Query: 542 DGCPIPQNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRR----H-G 594
G + N GEL + P+I G Y P ++ + H G
Sbjct: 378 TGKTLGVNQR--GELCVRGPMIMSG-------------YV-NNPEATNALIDKDGWLHSG 421
Query: 595 DVFERTSGGYYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 648
D+ Y+ R + G +V+ E+E I + + + G+P
Sbjct: 422 DI------AYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPN-IFDAGVAGLPD 474
Query: 649 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV--SHVVPLPSLPRTA 706
D G +VV+ T ++ + + V ++ K VV + +P+
Sbjct: 475 DDAGELPAAVVVLEHGKTMTEKEI----VDY---VASQVTT-AKKLRGGVVFVDEVPKGL 526
Query: 707 TNKVMRRVLRKQLAQLDQN--SKL 728
T K+ R +R+ L + + SKL
Sbjct: 527 TGKLDARKIREILIKAKKGGKSKL 550
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 2e-30
Identities = 117/536 (21%), Positives = 194/536 (36%), Gaps = 87/536 (16%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
MT ++ A A L ALG+ KG +A+ MP +V ++ G + V I
Sbjct: 42 VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 101
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
A+ E+S L S +K + G S P+ I AQA +
Sbjct: 102 LAAPEVSFILSDSGSKVVIY------GAPSAPVIDAIRAQADPPGTVTD---------WI 146
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA 388
G S + L + AVE + I+++SGTTG PK + T+ + AA+
Sbjct: 147 GADSLAERLRS----AAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSW 202
Query: 389 WCHMDIRKADIVAWPT------NLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQ 442
+D+R D + P L ++ + G ++ + +
Sbjct: 203 ASTIDVRYRDRLLLPLPMFHVAALTTVIFS------AMRGVTLISM-PQFDATKVWSLIV 255
Query: 443 DAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK---- 498
+ +V + G VP+I+ + D R F + G M AL K
Sbjct: 256 EERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAP---------MPEALIKIYAA 306
Query: 499 ---PVIEYCGGTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMG 554
V++ TE GG + S + + M + + G+DG G G
Sbjct: 307 KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIRE---HGEG 363
Query: 555 ELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAH 608
E+ + S ++ Y+ P R GD+ E GY
Sbjct: 364 EVVIKSDILLKE-------------YW-NRPEATRDAFDNGWFRTGDIGEIDDEGYLYIK 409
Query: 609 GRADDTMNLGGIKVSSVEIERICNAVDS--NVLETAAIGVPPPDGGPEQLTIVVVFKDSN 666
R D + GG V EIE + + V E A IG+P G E +VV +
Sbjct: 410 DRLKDMIISGGENVYPAEIE---SVIIGVPGVSEVAVIGLPDEKWG-EIAAAIVVADQNE 465
Query: 667 YTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQ 721
+ + + + +L +K+ V+ ++PR T K+++ VLR+Q +
Sbjct: 466 VSEQQI----VEY---CGTRLAR-YKLPKKVIFAEAIPRNPTGKILKTVLREQYSA 513
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 4e-30
Identities = 112/535 (20%), Positives = 185/535 (34%), Gaps = 81/535 (15%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
++ EL A VA L A GL G +A +V ++V+YLA V AG + + + +
Sbjct: 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTA 86
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
+ E+ + ++ K + I A+ + D
Sbjct: 87 YTLHELDYFITDAEPKIVVC------DPSKRDGIAAIAAKVGATVETLG---------PD 131
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA 388
G S D FA +++ + IL++SGTTG K ++ +
Sbjct: 132 GRGSLTDAAAG----ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTL 187
Query: 389 WCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDA 444
+ D++ + G + +L S+ KF D
Sbjct: 188 VDYWRFTPDDVLIHALPIYHTHGLFVA---SNVTLFARGSMIF---------LPKFDPDK 235
Query: 445 ------KVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 498
+ T+L VP+ + + +R F S G A + +
Sbjct: 236 ILDLMARATVLMGVPTFYTRLLQSPRLTKETTGHMRLFIS-GSAPLLADTHREWSAKTGH 294
Query: 499 PVIEYCGGTEIGGGFITGSLLQAQSLAAFS--TPAMGCKLFILGND-GCPIPQNVPGMGE 555
V+E G TE T + + + G + + G +P+ G
Sbjct: 295 AVLERYGMTETNM--NTSNPYDGDRVPG-AVGPALPGVSARVTDPETGKELPRGDI--GM 349
Query: 556 LAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILR-----RHGDVFERTSGGYYRAH 608
+ + P +F G Y+ MP + R GD+ + GY
Sbjct: 350 IEVKGPNVFKG-------------YW-RMPEKTKSEFRDDGFFITGDLGKIDERGYVHIL 395
Query: 609 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYT 668
GR D + GG V EIE +A+ V+E+A IGVP D G E +T VVV
Sbjct: 396 GRGKDLVITGGFNVYPKEIESEIDAMPG-VVESAVIGVPHADFG-EGVTAVVVRDKG--A 451
Query: 669 PPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQL 722
D Q+ + +L FK+ V+ + LPR KV + VLR+ +
Sbjct: 452 TIDEAQVL----HGLDGQLAK-FKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 102/558 (18%), Positives = 182/558 (32%), Gaps = 98/558 (17%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ E + + AL GL IA+ + +A + G V +
Sbjct: 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
+ E+ L ISK +F+ + DK I + + IVI S
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGL--DKVITVQK--TVTTIKTIVIL-----DSKVDYR 161
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFT---NILFSSGTTGEPKAIPWTNA---TPF 382
G F++R + V+ I+ SSG+TG PK + T+ T F
Sbjct: 162 GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 383 KAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKF-- 440
A D + V G + L+ G + + KF
Sbjct: 222 SHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVM---------LTKFDE 272
Query: 441 ------VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494
+QD K T + +VP++ + ++ YD S++ S G A + +
Sbjct: 273 ETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIAS-GGAP--------LSK 323
Query: 495 ALYKPVIEYCGGTEIGGGF--------ITGSLLQAQSLAAFSTPAMGCKLFIL-GNDGCP 545
+ + V + G+ I + A K ++ +
Sbjct: 324 EVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKS 383
Query: 546 IPQNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRR----H-GDVFE 598
+ N GE+ + P++ G Y P +++ H GD+
Sbjct: 384 LGPNRR--GEVCVKGPMLMKG-------------YV-NNPEATKELIDEEGWLHTGDI-- 425
Query: 599 RTSGGYYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652
GYY R + G +V E+E + S + + GVP P G
Sbjct: 426 ----GYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPS-IFDAGVAGVPDPVAG 480
Query: 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV--SHVVPLPSLPRTATNKV 710
+VV+ N T ++ M + V +++ K V + +P+ T K+
Sbjct: 481 ELPGAVVVLESGKNMTEKEV----MDY---VASQVSN-AKRLRGGVRFVDEVPKGLTGKI 532
Query: 711 MRRVLRKQLAQLDQNSKL 728
R +R+ L + +K+
Sbjct: 533 DGRAIREILKK--PVAKM 548
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 5e-29
Identities = 88/526 (16%), Positives = 166/526 (31%), Gaps = 67/526 (12%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+T ++ A +A L G+ G +AI + + A+ L G I++ +
Sbjct: 30 VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYR 89
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
+ EI+ L + G + + A G D
Sbjct: 90 LNADEIAFVLGDGAPSVVVA------GTDYRDIVAGVLPSLGGVKKAYAIG--------D 135
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA 388
G + F + + F+A E I+ ++ G P+ + A +
Sbjct: 136 GSGPFAPFKDL---ASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL 192
Query: 389 WCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTM 448
+ +AD+ L + G L+ G + + + A+ ++ KVT+
Sbjct: 193 VDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA-AKFDPAQAARDIEAHKVTV 251
Query: 449 LGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK-PVIEYCGGT 507
+ ++ + +S+R + E + G +
Sbjct: 252 MAEFAPML--GNILDQAAPAQLASLRAVTG-LDTP---ETIERFEATCPNATFWATFGQS 305
Query: 508 EIGGGFITGSLLQAQS-LAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIF-G 564
E G + + + P + ++ + P+P GE+ L P +F G
Sbjct: 306 ETSG---LSTFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKG 360
Query: 565 ASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRAD--DTMNLG 618
Y+ + R GD+ + GY GRA + + G
Sbjct: 361 -------------YW-NNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTG 406
Query: 619 GIKVSSVEIERICNAVDS--NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLR 676
G V E+E A+ + + IGVP P E + V V K + L
Sbjct: 407 GENVYPAEVE---GALKQHPAIADAVVIGVPDPQWS-EAIKAVCVCKPG--ESIAADALA 460
Query: 677 MSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQ 721
V + +K HVV + +LP+ A + R ++ Q
Sbjct: 461 ----EFVASLIAR-YKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQ 501
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 3e-28
Identities = 105/578 (18%), Positives = 203/578 (35%), Gaps = 91/578 (15%)
Query: 183 LSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDM 242
+ +++ + I + +SM E+ +A ++ G+ KG + + +
Sbjct: 25 IDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCI 84
Query: 243 PMNVNS---VVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSI 299
P NS V+ A+ V I + S E+ L S+A + ++
Sbjct: 85 P---NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSML------Y 135
Query: 300 PLYRVIDAQAPL--AIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEA 357
++ + + + V+ + +S S + G + E V+ E + A
Sbjct: 136 ENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGS----EDFENVKVNPEEDVAL------- 184
Query: 358 FTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL-VY 416
I ++ GTTG PK + T+ A + D + +G M P
Sbjct: 185 ---IPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTI-----VGCM--PMFHSA 234
Query: 417 ASLLNGASIALYNGSPL-------GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDG 467
++ + G+ A+ ++ K T VP + +T
Sbjct: 235 E--FGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT 292
Query: 468 YDWSSIRCFGSTGEA---SNVDEYLWLMGRALYKPVIEYCGG---TEIGGGFITGSLLQA 521
YDWS ++ F + + V++ L L P + + TE T L+
Sbjct: 293 YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRL 352
Query: 522 QSLAAFSTPAMGCKLFIL-GNDGCPIPQNVPGMGELALS-PLIF-G-------ASSTLLN 571
P +L ++ DG + GE+ + P IF G
Sbjct: 353 DKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQECWWY 410
Query: 572 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 631
+F R GDV G+ R + + G ++ E+E +
Sbjct: 411 DEKGRKFF------------RTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALL 458
Query: 632 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKD---SNYTPPDLNQLRMSFNSAVQKKLN 688
++ V++ A IG P + G E +V K D+ + + V+++++
Sbjct: 459 MKHEA-VMDVAVIGKPDEEAG-EVPKAFIVLKPEYRGKVDEEDI----IEW---VRERIS 509
Query: 689 PLFKVSHVVP-LPSLPRTATNKVMRRVLRKQLAQLDQN 725
+K V + LPRTA+ K++RR+LR++ A+ +
Sbjct: 510 G-YKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHH 546
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 7e-28
Identities = 101/555 (18%), Positives = 205/555 (36%), Gaps = 107/555 (19%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
T ++ VA LN +G+ +G I + +P + V+ +L G I+ +
Sbjct: 48 DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPF 107
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
E++ + S+AK + TQ + ++ + ++ D
Sbjct: 108 STPAELAKHAKASRAKLLITQAC------YYEKVKDFARESDVKVMCVDSAP-------D 154
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT--N--ATPFKA 384
G + + + + ENE V+ + + +SSGTTG PK + T + +
Sbjct: 155 GCLHFSELTQA----DENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQ 210
Query: 385 AADAWCHMDIRKADIVAWPTNLGWMMGPWL-VYA--SLLNGASIALYNGSPL-------G 434
++ D++ L + P +YA S++ L G+P+
Sbjct: 211 VDGDNPNLYFHSEDVI-----LCVL--PMFHIYALNSIMLC---GLRVGAPILIMPKFEI 260
Query: 435 SGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494
++ KV++ VVP ++ + + +D +D SS+R S G A +G+
Sbjct: 261 GSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKS-GGAP--------LGK 311
Query: 495 ALYKPVIEYCGGTEIGGGF--------ITGSLLQAQSLAAFS-----TPAMGCKLFIL-G 540
L V +G G+ + L A+ T ++ I+
Sbjct: 312 ELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDP 371
Query: 541 NDGCPIPQNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRRH----- 593
G +P+N P GE+ + I G Y P + + +
Sbjct: 372 ETGASLPRNQP--GEICIRGDQIMKG-------------YL-NDPEATSRTIDKEGWLHT 415
Query: 594 GDVFERTSGGYYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 647
GD+ GY R + + G +V+ E+E + A + + A +G+
Sbjct: 416 GDI------GYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPE-ISDAAVVGLK 468
Query: 648 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTAT 707
D G + VV + S T ++ + + K++ ++ V + ++P+ +
Sbjct: 469 DEDAGEVPVAFVVKSEKSQATEDEI----KQY---ISKQVIFYKRIKRVFFIEAIPKAPS 521
Query: 708 NKVMRRVLRKQLAQL 722
K++R+ L+++LA +
Sbjct: 522 GKILRKNLKEKLAGI 536
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-26
Identities = 120/533 (22%), Positives = 181/533 (33%), Gaps = 99/533 (18%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+S+T EL A A + +A+ + + V +A +LAG V +
Sbjct: 47 RSLTYAELAAAAGATA-----GRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPK 101
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
E++ L S + L + A + + + A+G+ D
Sbjct: 102 SGDKELAHILSDSAPSLVLA-------PPDAELPPALGALERVDVDVRARGAVPEDGADD 154
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIP------WTNATPF 382
GD + ++++SGTTG PK T
Sbjct: 155 GDPAL---------------------------VVYTSGTTGPPKGAVIPRRALATTLD-- 185
Query: 383 KAAADAWCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYNGSPLGSGFA 438
A ADAW D++ L G ++G + L G S+ G G A
Sbjct: 186 -ALADAW---QWTGEDVLVQGLPLFHVHGLVLG---ILGPLRRGGSVRHL-GRFSTEGAA 237
Query: 439 KFVQDAKVTMLGVVPSI---VRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495
+ + D TML VP++ + + + R S G A+ + A
Sbjct: 238 RELND-GATMLFGVPTMYHRIAETLPADPELAKALAGARLLVS-GSAALPVHDHERIAAA 295
Query: 496 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFS-TPAMGCKLFILGNDGCPIPQNVPG-M 553
+ VIE G TE T + A P G +L ++ DG PI +
Sbjct: 296 TGRRVIERYGMTETLM--NTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV 353
Query: 554 GELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRRH-----GDVFERTSGGYYR 606
GE+ + P +F Y P GD+ R GY R
Sbjct: 354 GEIQVRGPNLFTE-------------YL-NRPDATAAAFTEDGFFRTGDMAVRDPDGYVR 399
Query: 607 AHGRAD-DTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS 665
GR D + GG K+ + EIE V E A G P PD G E++ +V D
Sbjct: 400 IVGRKATDLIKSGGYKIGAGEIENALLEHPE-VREAAVTGEPDPDLG-ERIVAWIVPADP 457
Query: 666 NYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRK 717
PP L L V +L P K V L ++PR K+M+R L +
Sbjct: 458 A-APPALGTLA----DHVAARLAP-HKRPRVVRYLDAVPRNDMGKIMKRALNR 504
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-25
Identities = 105/562 (18%), Positives = 201/562 (35%), Gaps = 103/562 (18%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
T ++ +A + LG+++ + + +P V+ +LA G +
Sbjct: 87 HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPF 146
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
F EI+ + + S K I T+ + ++ Q +VI + S+ + +
Sbjct: 147 FTPAEIAKQAKASNTKLIITEARY--------VDKIKPLQNDDGVVIVCIDDNESVPIPE 198
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT--N--ATPFKA 384
G + + + + + E +VE + + +SSGTTG PK + T + +
Sbjct: 199 GCLRFTELTQSTTEASE-VIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQ 257
Query: 385 AADAWCHMDIRKADIVAWPTNLGWMMGPWL-VYA--SLLNGASIALYNGSPL-------G 434
++ D++ L + P +YA S++ L G+ +
Sbjct: 258 VDGENPNLYFHSDDVI-----LCVL--PMFHIYALNSIMLC---GLRVGAAILIMPKFEI 307
Query: 435 SGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494
+ + +Q KVT+ +VP IV ++ + YD SSIR S G A +G+
Sbjct: 308 NLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKS-GAAP--------LGK 358
Query: 495 ALYKPVIE----------YCGGTEIGGGFITGSLLQAQSLAAFS------TPAMGCKLFI 538
L V Y G TE G + S K+ +
Sbjct: 359 ELEDAVNAKFPNAKLGQGY-GMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKI-V 416
Query: 539 LGNDGCPIPQNVPGMGELAL-SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILRRH--- 593
+ G + +N P GE+ + I G Y P+ + + +
Sbjct: 417 DPDTGDSLSRNQP--GEICIRGHQIMKG-------------YL-NNPAATAETIDKDGWL 460
Query: 594 --GDVFERTSGGYYRAHG------RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIG 645
GD+ G R + + G +V+ E+E + + + A +
Sbjct: 461 HTGDI------GLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPD-ITDVAVVA 513
Query: 646 VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRT 705
+ G + VV KDS + D+ F V K++ +++ V S+P+
Sbjct: 514 MKEEAAGEVPVAFVVKSKDSELSEDDV----KQF---VSKQVVFYKRINKVFFTESIPKA 566
Query: 706 ATNKVMRRVLRKQLAQLDQNSK 727
+ K++R+ LR +LA +
Sbjct: 567 PSGKILRKDLRAKLANGLGSGM 588
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 5e-21
Identities = 110/541 (20%), Positives = 176/541 (32%), Gaps = 98/541 (18%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS---VVIYLAIVLAGYIVVSIAD 267
+T ELRA V VA L+A GL +A+ P NS V+ LA+ G + +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAP---NSADVVIAILALHRLGAVPALLNP 86
Query: 268 SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLR 327
S E++ ++ + A +A I GS +
Sbjct: 87 RLKSAELAELIKRGEMTAAVI-----------------AVGRQVADAIFQSGSGARIIFL 129
Query: 328 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPK-------AIPWTNAT 380
+ + ++ I ++SGTTG PK A
Sbjct: 130 GDLVRDGEPYSY-----GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAES-RVL 183
Query: 381 PFKAAADAWCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYNG-SPLGS 435
+ + ++V L G+ + A+L + + P
Sbjct: 184 ----FMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV---LVAALALDGTYVVVEEFRP--V 234
Query: 436 GFAKFVQDAKVTMLGVVPSIVRTWKS-----TNCIDGYDWSSIRCFGSTGEASNVDEYLW 490
+ VQ +VT L P+ + + S+R + A+ D L
Sbjct: 235 DALQLVQQEQVTSLFATPTH---LDALAAAAAHAGSSLKLDSLRH-VTFAGATMPDAVLE 290
Query: 491 LMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNV 550
+ + L + G TE + + Q + P ++ I+ G
Sbjct: 291 TVHQHLPGEKVNIYGTTEAMN---SLYMRQPK-TGTEMAPGFFSEVRIVRIGGGVDEIVA 346
Query: 551 PG-MGELAL--SPLIF-GASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSG 602
G GEL + S F G Y P + L+ R DV T
Sbjct: 347 NGEEGELIVAASDSAFVG-------------YL-NQPQATAEKLQDGWYRTSDVAVWTPE 392
Query: 603 GYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVLETAAIGVPPPDGGPEQLTIVV 660
G R GR DD + GG + EIE + + V E IG+ G + +T V
Sbjct: 393 GTVRILGRVDDMIISGGENIHPSEIE---RVLGTAPGVTEVVVIGLADQRWG-QSVTACV 448
Query: 661 VFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQL 719
V + + L +F +L FK L LP+ A NKV+RR L +Q+
Sbjct: 449 VPRLG--ETLSADALD-TF--CRSSELAD-FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
Query: 720 A 720
+
Sbjct: 503 S 503
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 8e-13
Identities = 41/275 (14%), Positives = 97/275 (35%), Gaps = 20/275 (7%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+S T + L E L+A L + S + + + ++ S+++ A LA + I
Sbjct: 25 ESYTYQNLYCEASLLA---KRLKAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTR 81
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
E++ ++R + IF I + + ++ +
Sbjct: 82 LTPNEMTNQMRSIDVQLIFC------TLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTM 135
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA 388
G V K + ++ +I+F+SGTTG KA+P T + +A
Sbjct: 136 GIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGC 195
Query: 389 WCHMDIRKADIVAWPTNL----GWMMGPWLVYASLLNGASIALYNG-SPLGSGFAKFVQD 443
+ + + G + + +++ G ++ + + + +++
Sbjct: 196 KESLGFDRDTNWLSVLPIYHISGLSV----LLRAVIEGFTVRIVDKFNA--EQILTMIKN 249
Query: 444 AKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGS 478
++T + +VP + + Y+ I G+
Sbjct: 250 ERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA 284
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 3e-10
Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 16/131 (12%)
Query: 594 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS--NVLETAAIGVPPPDG 651
GD+ E GY + R D + GG + +IE + + +G P
Sbjct: 380 GDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIE---TVAKQFPGISDAVCVGHPDDTW 436
Query: 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKV 710
G + + V + + L + K L +KV H + +LP T+T K+
Sbjct: 437 G-QVPKLYFVSESD-ISKAQLIA-------YLSKHLAK-YKVPKHFEKVDTLPYTSTGKL 486
Query: 711 MRRVLRKQLAQ 721
R L ++
Sbjct: 487 QRNKLYREGHH 497
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 609 GRADDTMNLGGIKVSSVEIERICNAVDSNVL--ETAAIGVPPPDGGPEQLTIVVVFKDSN 666
GR D + + G +IE + + + AA + + +LT++ K+
Sbjct: 455 GRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQ--EEHEYKLTVMCEVKNRF 512
Query: 667 YTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLP--SLPRTATNKVMRRVLRKQLAQ 721
+ L V + +V +V +P ++P T + K+ R RK L
Sbjct: 513 MDDVAQDNLFNEIFELVYENHQ--LEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 7e-09
Identities = 33/250 (13%), Positives = 72/250 (28%), Gaps = 46/250 (18%)
Query: 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVI 251
+ + ++ ++MT ++L +A L A G G + + + +
Sbjct: 26 NKKSCTFLNKE----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQA 81
Query: 252 YLAIVLAGYIVVSIA--DSFASLE-ISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQ 308
+L + AG I V I L+ + SK +
Sbjct: 82 FLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLM-------------------- 121
Query: 309 APLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTT 368
+ + + I + LE + + + + + ++SG+T
Sbjct: 122 -IADHIKKFTADELNTNPKFLKIPAIA-LESIELNRSSSWQPTSIKSNDIAFLQYTSGST 179
Query: 369 GEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWM-----MGPWLVYASLLNGA 423
PK + ++ + + I+ W+ MG L+ L
Sbjct: 180 MHPKGVMVSHHNLLDNLNKIFTSFHMNDETII-----FSWLPPHHDMG--LIGCILT--- 229
Query: 424 SIALYNGSPL 433
+Y G
Sbjct: 230 --PIYGGIQA 237
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 43/254 (16%), Positives = 79/254 (31%), Gaps = 45/254 (17%)
Query: 192 DDIVIRWCD-EGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVV 250
D + D E D ++T +L VA L+ G G + I P + VV
Sbjct: 39 HDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVV 97
Query: 251 IYLAIVLAGYIVVSIA--DSFASLE-ISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDA 307
+L + AG I V ++ + E + L S AI T ++ A
Sbjct: 98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILT------TSSAVDDVVQHVA 151
Query: 308 QAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGT 367
+ P + S ++ ++ + N + E + + ++SG+
Sbjct: 152 RRPG----------------ESPPSIIE-VDLLDLDAPNGYTFKEDEYPSTAYLQYTSGS 194
Query: 368 TGEPKAIPWTNA---TPFKAAADAWCHMDIRKADIVAWPTNLGWM-----MGPWLVYASL 419
T P + ++ F+ + + W+ MG LV
Sbjct: 195 TRTPAGVVMSHQNVRVNFEQLMSGYFAD--TDGIPPPNSALVSWLPFYHDMG--LVIGIC 250
Query: 420 LNGASIALYNGSPL 433
+ G P
Sbjct: 251 A-----PILGGYPA 259
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 112/586 (19%), Positives = 200/586 (34%), Gaps = 145/586 (24%)
Query: 194 IVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL 253
+V R V T E+ + L ALG+ G +A + + Y
Sbjct: 36 VVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 90
Query: 254 AIVLAGYIVVSI-----ADSFASLEISARLRISKAKAIFTQDLIIRGDKS-IPLYRVIDA 307
A+ G ++ + EI+ L ++ K + D + +PL I
Sbjct: 91 AVPGMGAVLHTANPRLSPK-----EIAYILNHAEDKVLLF-------DPNLLPLVEAIRG 138
Query: 308 QAP---LAIVIPAKGSSFSMKLRDGDISWLDFLER---VRKLKENEFAAVEQPVEAFTNI 361
+ +V+ K +G +++ + L ++ E +
Sbjct: 139 ELKTVQHFVVMDEKAP-------EGYLAYEEALGEEADPVRVPERAACG----------M 181
Query: 362 LFSSGTTGEPKAIPWT------NATPFKAAADAWCHMDIRKADIVAWPT-----NLGWMM 410
+++GTTG PK + ++ ++ AA + + D+V N W
Sbjct: 182 AYTTGTTGLPKGVVYSHRALVLHSL----AASLVDGTALSEKDVVLPVVPMFHVN-AW-- 234
Query: 411 GPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKS-TNCID--G 467
L YA+ L GA L + + VT VP++ W + + ++ G
Sbjct: 235 C--LPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTV---WLALADYLESTG 289
Query: 468 YDWSSIRCFGSTGEASNVDEYLWLMGRALYK-------PVIEYCGGTEIGGGFITGSLLQ 520
+ ++R G A R+L V + G TE + + ++
Sbjct: 290 HRLKTLRRLVVGGSA---------APRSLIARFERMGVEVRQGYGLTETSP-VVVQNFVK 339
Query: 521 AQSLAAFST------------PAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASS 567
+ L + S P +L + +G P+P++ +GE+ L P I G
Sbjct: 340 SH-LESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG-- 396
Query: 568 TLLNANHYDVYFSGMPSRNGQILRR----H-GDVFERTSGGYYRAHGRADDTMNLGGIK- 621
Y+ G L GD+ GY R D IK
Sbjct: 397 ----------YY-GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDL-----IKS 440
Query: 622 ----VSSVEIERICNAVDS--NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQL 675
+SSV++E NA+ V E A + +P P E+ VVV + TP +L
Sbjct: 441 GGEWISSVDLE---NALMGHPKVKEAAVVAIPHPKWQ-ERPLAVVVPRGEKPTPEEL--- 493
Query: 676 RMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLA 720
++ +++ V +PRT+ K ++R LR+Q
Sbjct: 494 NEHL---LKAGF-AKWQLPDAYVFAEEIPRTSAGKFLKRALREQYK 535
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 84/444 (18%), Positives = 142/444 (31%), Gaps = 116/444 (26%)
Query: 329 GDISWLDFLER---VRK--LKEN----EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNA 379
D+ L L + K L++N FA P E + SSGTTG+P + +T
Sbjct: 59 DDLKSLADLAKFPFSTKNDLRDNYPFGLFAV---PREQVVRVHASSGTTGKPTVVGYT-- 113
Query: 380 TPFKAAADAWCHM--------DIRKADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNG 430
D W ++ R D + G G + Y + G +
Sbjct: 114 ---ARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVV---- 166
Query: 431 SPLGSGF----AKFVQDAKVTMLGVVPS----IVRTWKSTNCIDGYDWSSIRCFGSTGEA 482
P+ G + ++D + ++ V PS ++ +D + SS++ E
Sbjct: 167 -PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQG-MDPAE-SSLKIGIFGAEP 223
Query: 483 SNVDEYLWL--MGRALYK----PVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKL 536
W + + ++ G +E+ G + A
Sbjct: 224 -------WTQALRNEVETRVGIDALDIYGLSEVMGPGV-----------ACECVETKDGP 265
Query: 537 FILG----------NDGCPIPQNVPG-MGELALSPLIFGASSTLLNANHYDVYFSGMPSR 585
I G +P G GEL T L MP
Sbjct: 266 VIWEDHFYPEIIDPVTGEVLP---DGSQGELVF---------TSLTK-------EAMP-- 304
Query: 586 NGQILR-RHGDVFE------RTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNV 638
++R R D+ R + GR+DD + + G+ V +IE I A+
Sbjct: 305 ---VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPL-- 359
Query: 639 LETAAIGVPPPDGGPEQLTIVVVFKD---SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSH 695
L DG ++L + V + ++ T + L ++ + V
Sbjct: 360 LSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGV-T 418
Query: 696 VVPLPSLPRTATNKVMRRV--LRK 717
V+ +P TAT K RRV R+
Sbjct: 419 VLAAGGIPATATGKA-RRVIDRRQ 441
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 90/446 (20%), Positives = 150/446 (33%), Gaps = 123/446 (27%)
Query: 329 GDISWLDFLER---VRK--LKEN---EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT 380
D+ L L R K L+++ AV P + + I SSGTTG+P + +T
Sbjct: 57 DDLKTLADLSRFPFTTKGDLRDSYPFGMFAV--PQDRISRIHASSGTTGKPTVVGYT--- 111
Query: 381 PFKAAADAWCHM--------DIRKADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNGS 431
A D W ++ R+ D V G G Y + G ++
Sbjct: 112 --AADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVI----- 164
Query: 432 PLGSGF----AKFVQDAKVTMLGVVPS----IVRTWKSTNCIDGYDWSSIRCFGSTGEAS 483
P G G + +QD + ++ V PS I + +D SS+R E
Sbjct: 165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG-LDPVQ-SSLRIGIFGAEP- 221
Query: 484 NVDEYLWL--MGRALYK----PVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLF 537
W M A+ + ++ G +E+ G + A
Sbjct: 222 ------WTNDMRVAIEQRMGIDAVDIYGLSEVMGPGV-----------ASECVETKDGPT 264
Query: 538 ILG----------NDGCPIPQNVPG-MGELALSPLIFGASSTLLNANHYDVYFSGMPSRN 586
I G +P G +GEL T L +P
Sbjct: 265 IWEDHFYPEIIDPETGEVLP---DGELGELVF---------TSLTK-------EALP--- 302
Query: 587 GQILR-RHGDVFE------RTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVL 639
I+R R D+ RT + GR+DD M + G+ V +IE +L
Sbjct: 303 --IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQ-------LL 353
Query: 640 ETAAIG-----VPPPDGGPEQLTIVV-VFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV 693
+ A+ V +G + LT+ V ++ + + + ++ + +
Sbjct: 354 KQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVI 413
Query: 694 SHVVPLPSLPRTATNKVMRRV--LRK 717
+V+P+ + R+ K RRV RK
Sbjct: 414 -NVLPVNGIERS-VGKA-RRVVDKRK 436
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 2e-05
Identities = 31/242 (12%), Positives = 63/242 (26%), Gaps = 29/242 (11%)
Query: 347 EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATP----FKAAADAWCHMDIRKADIVAW 402
P ++ + S GTTG PK + +A + + +A
Sbjct: 82 NLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAA 141
Query: 403 PTNLGWMMGPWLVYASLLNGASIALYNGSP------LGSGFAKFV--------------- 441
++G +L G + P L G V
Sbjct: 142 IPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTL 201
Query: 442 QDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK-PV 500
+ + L P ++R + S+ G N+DE ++ L
Sbjct: 202 MNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEF 261
Query: 501 IEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFIL-GNDGCPIPQNVPGMGELALS 559
G T G + + + + + ++ + G + ++
Sbjct: 262 SASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNVIVT 319
Query: 560 PL 561
L
Sbjct: 320 HL 321
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 33/212 (15%)
Query: 361 ILFSSGTTGEPK--AIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 418
I+++SGTTG+PK N D +M D +N + + YAS
Sbjct: 612 IMYTSGTTGKPKGNITTHANIQGLVKHVD---YMAFSDQDTFLSVSNYAFDAFTFDFYAS 668
Query: 419 LLNGASIALYNGSPLGSG--FAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 476
+LN A + + + L + V ++ ++ +RC
Sbjct: 669 MLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA---GEDWMKGLRCI 725
Query: 477 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEI--GGG------FITGSLLQAQSLAAFS 528
GE ++V + + G ++ G F T ++ + S
Sbjct: 726 LFGGERASVP---------HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISS 776
Query: 529 ----TPAMGCKLFILGNDGCPIPQNVPGMGEL 556
P ++IL P GEL
Sbjct: 777 LPIGKPISNASVYILNEQSQLQPFGAV--GEL 806
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 28/213 (13%)
Query: 361 ILFSSGTTGEPK--AIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 418
I+F+SGTTG+PK I N F D+ K + + + +
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPT 209
Query: 419 LLNGAS--IALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCF 476
L G + + V + PS ++ ++ F
Sbjct: 210 LALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHF 269
Query: 477 GSTGEASNVDEYLWLMGRALYKPVIEYCGGTEI--GGG------FITGSLLQAQSLAAFS 528
GE V + + E +I G ++ + + + ++
Sbjct: 270 YFDGEELTVS---------TARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYT 320
Query: 529 TPAMGC-----KLFILGNDGCPIPQNVPGMGEL 556
+G +I+ DG + GE+
Sbjct: 321 RLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEI 351
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 63/498 (12%), Positives = 117/498 (23%), Gaps = 142/498 (28%)
Query: 316 PAKGSSFSMKLRDGDISWLDFLERVR------KLKENEFAAVEQPVEAFTNILFSSGTTG 369
P K + + D L+ E + K + + + + E + G
Sbjct: 917 PEKKEMIQEVIVEED---LEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSV--KLLKG 971
Query: 370 EPKAIPWTNATPFKAAA------DAWCHM----DIRKAD------IV----AWPTNLGWM 409
IP A +A + I + D +V A+ G
Sbjct: 972 ATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAF-IASGIT 1030
Query: 410 MGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLG-------VVPSIVRTWKST 462
++ + + +GS +G G + K + S +
Sbjct: 1031 --DPYEMYKYVHVSEVGNCSGSGMG-GVSALRGMFKDRFKDEPVQNDILQESFI-----N 1082
Query: 463 NCIDGYDWSSIRCFGSTG-----------EASNVDEYLWL--MGRALYKPVIEYCGGTE- 508
+ + S+G +VD + G+A + I GG +
Sbjct: 1083 TMSAWV--NMLL-ISSSGPIKTPVGACATSVESVDIGVETILSGKA--RICI--VGGYDD 1135
Query: 509 -----IGG--------------------------------GFITGS-----LLQAQSLAA 526
GF+ ++ LA
Sbjct: 1136 FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLAL 1195
Query: 527 FSTPAMGCKLFILG--------NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY 578
MG I G D PG G I + ++ Y
Sbjct: 1196 ----KMGVP--IYGIVAMAATATDKIGRSVPAPGKG-------ILTTAREHHSSVKYASP 1242
Query: 579 FSGMPSRNGQILRRHGDVFERTSG--GYYRAHG---RADDTMNLGGIKVSSVEIERICNA 633
M R Q++ R + + + ++D + + E
Sbjct: 1243 NLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQL 1302
Query: 634 VDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV 693
+ G P + T DL S N +
Sbjct: 1303 RAA----QQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATI 1358
Query: 694 SHVVPLPSLPRTATNKVM 711
+ + + L R+ N V+
Sbjct: 1359 NEM--MKHLGRSEGNPVI 1374
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 35/148 (23%), Positives = 50/148 (33%), Gaps = 34/148 (22%)
Query: 329 GDISWLDFLER---VRK--LKEN----EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNA 379
I LD + + K ++ N A I SSGTTG P I +
Sbjct: 52 DSIQSLDDIRKIPFTTKSDMRANYPFGLVAGD--MKRDGVRIHSSSGTTGNPTVIVHS-- 107
Query: 380 TPFKAAADAWCHM--------DIRKADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNG 430
+ D+W ++ IRK D+ + G G Y + G
Sbjct: 108 ---QHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV---- 160
Query: 431 SPLGSGF----AKFVQDAKVTMLGVVPS 454
P +G KF+ D K T L +PS
Sbjct: 161 -PAAAGNSKRQIKFISDFKTTALHAIPS 187
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 728 | |||
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.57 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.54 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.77 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.75 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.68 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 98.19 | |
| 4hvm_A | 493 | Tlmii; PSI-biology, midwest center for structural | 97.63 | |
| 1l5a_A | 436 | Amide synthase, VIBH; nonribosomal peptide synthet | 97.11 | |
| 2xhg_A | 466 | Tyrocidine synthetase A; isomerase, nonribosomal p | 95.45 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 90.74 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 89.24 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 88.77 |
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-92 Score=877.02 Aligned_cols=638 Identities=16% Similarity=0.149 Sum_probs=512.0
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCC--CC-----CCccC-
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGP--DP-----PAWIP- 86 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~--~~-----~~~~~- 86 (728)
.+++|+..+++.+|.++|++++++..+ +||++||++|++.++ ..+.++.||+..++.... .. .....
T Consensus 301 tlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~i~~~l~---~~~lf~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 377 (1304)
T 2vsq_A 301 VVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQAD---QPKLIDHIIVFENYPLQDAKNEESSENGFDMVD 377 (1304)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHHHHHSSS---CSSSCCCEEEECSSCHHHHSCCCHHHHSEEEEE
T ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHHHHHHhC---CCcccceeEEEeecccccccccccccCCceeEe
Confidence 367888888999999999999998877 999999999999886 234444444333322100 00 00000
Q ss_pred -ChhhhhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCC
Q 004825 87 -DPEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLS 164 (728)
Q Consensus 87 -~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (728)
......+|||.+.+. .++++...+ |++ ++|++.+++++.++|.++|+++ .+.|+..+...++..+++.
T Consensus 378 ~~~~~~~~~dL~l~~~-~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l----~~~p~~~~~~~~~l~~~e~ 447 (1304)
T 2vsq_A 378 VHVFEKSNYDLNLMAS-PGDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQL----IQNPDQPVSTINLVDDRER 447 (1304)
T ss_dssp EEECCCCCSSEEEEEE-CSSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHH----HHSTTSBGGGCCCCCHHHH
T ss_pred eecccccccCeEEEEe-cCCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHh----ccCccccccccCCCCHHHH
Confidence 001235677776553 356677788 999 9999999999999999999997 3445555555444333222
Q ss_pred -CCCCCCCCCCcc---hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 004825 165 -NPGGQWLPGAFV---NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAI 240 (728)
Q Consensus 165 -~~~~~w~~~~~~---~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai 240 (728)
.....|+..... .....+|.++++++||++|+++.++ ++||+||+++++++|++|++.|+++|++|+|
T Consensus 448 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i 519 (1304)
T 2vsq_A 448 EFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSVVAL 519 (1304)
T ss_dssp HHHHTTTSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEE
Confidence 234556654332 2456778889999999999998877 9999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCC
Q 004825 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGS 320 (728)
Q Consensus 241 ~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 320 (728)
+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.........++. ....+.++. .
T Consensus 520 ~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~-------~~~~~~~~~--~ 590 (1304)
T 2vsq_A 520 YTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY-------TGTTLFIDD--Q 590 (1304)
T ss_dssp CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCC-------CSEEEESSC--G
T ss_pred EeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCC-------CCcEEEecc--c
Confidence 9999999999999999999999999999999999999999999999998754321111110 011111110 0
Q ss_pred CcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEE
Q 004825 321 SFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV 400 (728)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 400 (728)
... . ...........++++|||+|||||||+||||+++|+++.+. .+....++++++|++
T Consensus 591 ----------~~~------~---~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~ 650 (1304)
T 2vsq_A 591 ----------TRF------E---EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTF 650 (1304)
T ss_dssp ----------GGG------G---SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEE
T ss_pred ----------ccc------c---cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEE
Confidence 000 0 01111223456899999999999999999999999999876 455566889999999
Q ss_pred EecCCcchhhhHHHHHHHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEe
Q 004825 401 AWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGS 478 (728)
Q Consensus 401 l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~ 478 (728)
+++++++|+.+.+++|.+|+.|+++++++.. .++..+.+.|++++||+++++|++++.|.+.. ...+++||.+++
T Consensus 651 l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~ 727 (1304)
T 2vsq_A 651 LSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILF 727 (1304)
T ss_dssp EECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEE
T ss_pred EEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEE
Confidence 9999999999999999999999999998743 46788999999999999999999999997653 223678999999
Q ss_pred ecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcc---cccccccccCCCCCceEEEEcCCCCccCCCCCceeE
Q 004825 479 TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 555 (728)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGE 555 (728)
|||++++++.+++.+.+++++++|.||+||+++.++..... ......++|+|++|++++|+|++++++|.|++ ||
T Consensus 728 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GE 805 (1304)
T 2vsq_A 728 GGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAV--GE 805 (1304)
T ss_dssp ESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCC--EE
T ss_pred ecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCc--eE
Confidence 99999999999988888778999999999999765543322 22345689999999999999999999999997 99
Q ss_pred EEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCC
Q 004825 556 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 635 (728)
Q Consensus 556 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~ 635 (728)
|+|++..+..+ |+++++.|+++|+.+|+.+|.|||||||+|||++||.|+|+||+|+|||+||+||+|+|||++|. .|
T Consensus 806 l~i~G~~v~~G-Y~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~-~~ 883 (1304)
T 2vsq_A 806 LCISGMGVSKG-YVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQ-EY 883 (1304)
T ss_dssp EEEEETTCCCC-BTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHH-HS
T ss_pred EEEeccccCcc-ccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHH-hC
Confidence 99987766653 46788999999999999889999999999999999999999999999999999999999999995 89
Q ss_pred CCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHH
Q 004825 636 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 715 (728)
Q Consensus 636 p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L 715 (728)
|+|.+|+|++.+++.++ ..++||++... ..+.++++ ++|+++||.||+|..|+++++||+|+||||||++|
T Consensus 884 p~V~~a~V~~~~~~~~~-~~l~a~vv~~~----~~~~~~l~----~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L 954 (1304)
T 2vsq_A 884 PGVKDAVVVADRHESGD-ASINAYLVNRT----QLSAEDVK----AHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954 (1304)
T ss_dssp SSCCEEEEEEECCSSSC-CEEEEEEECSS----SSCHHHHH----HHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCC
T ss_pred CCCceEEEEEEecCCCC-EEEEEEEeCCC----CCCHHHHH----HHHHHhChHhhhccEEEEecccCCCCCcccCHhhc
Confidence 99999999998877666 89999999765 34555554 46888999999999999999999999999999999
Q ss_pred HHHHH
Q 004825 716 RKQLA 720 (728)
Q Consensus 716 ~~~~~ 720 (728)
++...
T Consensus 955 ~~~~~ 959 (1304)
T 2vsq_A 955 PKPDQ 959 (1304)
T ss_dssp CCCCG
T ss_pred CCcch
Confidence 76543
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-87 Score=773.92 Aligned_cols=580 Identities=26% Similarity=0.403 Sum_probs=475.6
Q ss_pred CHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCCCCeEEE
Q 004825 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIR 197 (728)
Q Consensus 118 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~ 197 (728)
+|..++++++++++.||.++++. +.|.++++++++.... ...+..+||.++..|.++++|+++++++||++|++
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~wf~~~~~n~~~~~l~~~a~~~pd~~Al~ 96 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFA----PGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAII 96 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECC----TTCCEEEESTTCEECHHHHHTGGGHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccc----cCCCCCEECCCCChhHHHHHHHHHhccCCCceEEE
Confidence 46888999999999999999886 5788888887754210 01235689999999999999999999999999999
Q ss_pred EeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHH
Q 004825 198 WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277 (728)
Q Consensus 198 ~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~ 277 (728)
+.+. ..+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++
T Consensus 97 ~~~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~ 174 (652)
T 1pg4_A 97 WEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGC 174 (652)
T ss_dssp EECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHH
T ss_pred EEcC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHH
Confidence 8543 12234589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecceecCCcccchHhhH----hhc----CCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccc
Q 004825 278 LRISKAKAIFTQDLIIRGDKSIPLYRVI----DAQ----APLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 349 (728)
Q Consensus 278 l~~~~~~~il~~~~~~~~~~~~~~~~~~----~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (728)
++++++++||+++.....++.++....+ ... ...+++++........ ......+|.++...... ...
T Consensus 175 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~ 249 (652)
T 1pg4_A 175 IIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP----EHQ 249 (652)
T ss_dssp HHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS----CCC
T ss_pred HHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC----CCC
Confidence 9999999999999877666655544222 111 1234444432211110 11224567777653221 122
Q ss_pred cccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHH-HHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEEE
Q 004825 350 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA-DAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 427 (728)
Q Consensus 350 ~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl 427 (728)
.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|++++ +.++.+|+.|+++++
T Consensus 250 ~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl 329 (652)
T 1pg4_A 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329 (652)
T ss_dssp CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred ccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEE
Confidence 3345679999999999999999999999999877654 44566899999999999999999998 789999999999999
Q ss_pred eCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHhccC--CCCe
Q 004825 428 YNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--YKPV 500 (728)
Q Consensus 428 ~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~l 500 (728)
+++. +++..+++.|++++||+++++|++++.|++... ....++++||.+++|||++++++++++.+.++ ++++
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i 409 (652)
T 1pg4_A 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPV 409 (652)
T ss_dssp ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCE
T ss_pred ECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcE
Confidence 9864 477899999999999999999999999988643 34567899999999999999999999988775 3789
Q ss_pred EecccccccccccccCCc-ccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCcc-ccCccccccc
Q 004825 501 IEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASST-LLNANHYDVY 578 (728)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~-~~~~~~~~~~ 578 (728)
+|.||+||+++.++...+ ..+...+++|+|++|++++|+|++|+++|.|+. |||+|++.+.+...+ +++++.+.+.
T Consensus 410 ~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~gY~~~~e~~~~~ 487 (652)
T 1pg4_A 410 VDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFEQT 487 (652)
T ss_dssp EEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHHHH
T ss_pred EccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhhhhcCCHHHHHhh
Confidence 999999999976555433 223456899999999999999999999999975 999997743333333 4455555443
Q ss_pred cccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEE
Q 004825 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 658 (728)
Q Consensus 579 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a 658 (728)
|... .+| ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+++..| +.++|
T Consensus 488 ~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a 561 (652)
T 1pg4_A 488 YFST--FKN--MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYA 561 (652)
T ss_dssp HHSS--STT--SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hhhc--CCC--EEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEE
Confidence 3211 124 9999999999999999999999999999999999999999996 9999999999999988777 89999
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 659 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 659 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
||++++ +. ...+++.+.|+++|+++||+||+|..|+++++||+|+||||+|++|++++..
T Consensus 562 ~Vv~~~-~~--~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 621 (652)
T 1pg4_A 562 YVTLNH-GE--EPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 621 (652)
T ss_dssp EEEECT-TC--CCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred EEEECC-CC--CCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhC
Confidence 999987 54 2334567788889999999999999999999999999999999999999876
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-87 Score=771.22 Aligned_cols=592 Identities=24% Similarity=0.379 Sum_probs=475.2
Q ss_pred CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCC
Q 004825 112 YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSL 191 (728)
Q Consensus 112 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~p 191 (728)
+...+.+|..++++++++++.||.++++.. +.|.++++++++.... ......+..+||.++..|.++++|+++++++|
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~~p 96 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPK-TGRPSFQNNAWFLNGQLNACYNCVDRHALKTP 96 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSS-SCSBCSTTCCBSTTCEECHHHHHTHHHHTTCT
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccc-cccCCCCCCCcCCCCCccHHHHHHHHHhccCC
Confidence 555667889999999999999999999862 5799999988865410 00001223689999999999999999999999
Q ss_pred CCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCC
Q 004825 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN-ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270 (728)
Q Consensus 192 d~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~ 270 (728)
|++|+++.+. ..+..+++||+||.++++++|++|+ ++|+++||+|+|+++|++++++++|||+++|++++|++|.++
T Consensus 97 d~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~ 174 (663)
T 1ry2_A 97 NKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 174 (663)
T ss_dssp TSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSC
T ss_pred CceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCC
Confidence 9999998643 1223458999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEecceecCCcccchHhhHhh----cC--CcEEEEcCCCC-CcccccCCCCcCHHHHHHhhhcc
Q 004825 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDA----QA--PLAIVIPAKGS-SFSMKLRDGDISWLDFLERVRKL 343 (728)
Q Consensus 271 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~----~~--~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
.+++.++++++++++||+++...+.++.++....++. .+ ..+++++.... ... .......+|.++.....
T Consensus 175 ~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 251 (663)
T 1ry2_A 175 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA-FHAPRDLDWATEKKKYK-- 251 (663)
T ss_dssp HHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC-CCSSSEEEHHHHHTTSC--
T ss_pred HHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc-cCCCccccHHHHHhhcC--
Confidence 9999999999999999999987776666665432222 11 23444443221 000 01123456777665322
Q ss_pred ccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHH-HHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhh
Q 004825 344 KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA-DAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLN 421 (728)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~ 421 (728)
...+.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.++++|+++. +.++.+|+.
T Consensus 252 --~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~ 329 (663)
T 1ry2_A 252 --TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLY 329 (663)
T ss_dssp --SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHH
T ss_pred --CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHh
Confidence 11233455689999999999999999999999999876654 34456899999999999999999998 788999999
Q ss_pred CcEEEEeCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 422 GASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 422 G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
|++++++++. +++..+++.|++++||++.++|++++.|.+... ....++++||.+++|||++++++++++.+.++
T Consensus 330 G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g 409 (663)
T 1ry2_A 330 GCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIG 409 (663)
T ss_dssp TSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999764 467899999999999999999999999987654 34567899999999999999999999998775
Q ss_pred --CCCeEecccccccccccccCCc--ccccccccccCCCCCceEEEEcC-CCCccCC-CCCceeEEEEeccccCCCc-cc
Q 004825 497 --YKPVIEYCGGTEIGGGFITGSL--LQAQSLAAFSTPAMGCKLFILGN-DGCPIPQ-NVPGMGELALSPLIFGASS-TL 569 (728)
Q Consensus 497 --~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~-g~~giGEl~v~~~~~~~~~-~~ 569 (728)
.++++|.||+||+++.++...+ ..+...+++|+|++|++++|+|+ +|++++. |+. |||+|.++..+... |+
T Consensus 410 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~gy~ 487 (663)
T 1ry2_A 410 KNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFARTIW 487 (663)
T ss_dssp CSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCEET
T ss_pred CCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcccc
Confidence 3789999999999876555433 23456789999999999999999 8999988 775 99999764333233 34
Q ss_pred cCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCC
Q 004825 570 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 649 (728)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~ 649 (728)
++++.+.+.|... .+| ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+++
T Consensus 488 ~~~~~~~~~~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~ 562 (663)
T 1ry2_A 488 KNHDRYLDTYLNP--YPG--YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDD 562 (663)
T ss_dssp TCHHHHHHHHTSS--STT--SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCC
T ss_pred cChHHHHHhhhcC--CCC--EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEecC
Confidence 5556555444321 124 9999999999999999999999999999999999999999995 9999999999999988
Q ss_pred CCCceEEEEEEEecCCCCCC--CCHH---HHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 650 DGGPEQLTIVVVFKDSNYTP--PDLN---QLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~--~~~~---~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
..| +.++|||++++ +... ...+ ++.+.|+++|+++||+||+|..|+++++||+|+||||+|++|++++..
T Consensus 563 ~~g-~~~~a~Vv~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 563 LTG-QAVAAFVVLKN-KSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 637 (663)
T ss_dssp TTS-CCCEEEEEEC-------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred CCC-eEEEEEEEEcC-CCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcC
Confidence 777 88999999887 4310 1011 467788889999999999999999999999999999999999998765
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-82 Score=721.28 Aligned_cols=523 Identities=20% Similarity=0.259 Sum_probs=414.7
Q ss_pred CCCCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Q 004825 168 GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (728)
Q Consensus 168 ~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (728)
.+|......|..+++|+++++++||++|+++.+. .+..+++||+||+++++++|++|+++|+++||+|+|+++|+++
T Consensus 47 ~~~~~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~---~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e 123 (580)
T 3etc_A 47 FKILVPENFNFAYDVVDVYARDSPEKLAMIWCDD---YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD 123 (580)
T ss_dssp CCBCCCSSCCHHHHTHHHHHHHCTTCEEEEEEES---SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH
T ss_pred CCCCCcccchHHHHHHHHHHhhCCCCEEEEEEcC---CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence 4577677789999999999999999999998643 1234689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC---CcEEEEcCCCCCcc
Q 004825 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA---PLAIVIPAKGSSFS 323 (728)
Q Consensus 248 ~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~---~~~~~i~~~~~~~~ 323 (728)
+++++|||+|+|+++||++|.++.+++.++++++++++||++.... ..... ....... ...+.+...
T Consensus 124 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----- 194 (580)
T 3etc_A 124 FWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD----- 194 (580)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS-----
T ss_pred HHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc-----
Confidence 9999999999999999999999999999999999999999987531 00111 2222222 233333321
Q ss_pred cccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEec
Q 004825 324 MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWP 403 (728)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 403 (728)
...+...+.+...................++++|||+|||||||.||||+++|.+++..+......+++.+++++++.
T Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (580)
T 3etc_A 195 --VLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTV 272 (580)
T ss_dssp --CCTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEEC
T ss_pred --cccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEe
Confidence 112345566655543321111111135678999999999999999999999999998888776667889999999999
Q ss_pred CCcchhhhHHH-HHHHhhhCcEEEEeC-CCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecC
Q 004825 404 TNLGWMMGPWL-VYASLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGE 481 (728)
Q Consensus 404 ~~~~~~~~~~~-~~~~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe 481 (728)
++++|+.+.+. ++.++..|+++++.+ ...++..+++.|+++++|+++++|++++.|++.. ....++++||.+++|||
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe 351 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGE 351 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSS
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccC
Confidence 99999999864 789999999999985 4567889999999999999999999999998863 34567899999999999
Q ss_pred CCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEecc
Q 004825 482 ASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPL 561 (728)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~ 561 (728)
++++++.+++.+.+ +++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|+|+. |||+|.+.
T Consensus 352 ~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v~~~ 427 (580)
T 3etc_A 352 PLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-WMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVINTM 427 (580)
T ss_dssp CCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-TSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEECT
T ss_pred CCCHHHHHHHHHHh-CCeEecccccccccceeecCC-CCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEEecC
Confidence 99999999998776 489999999999987554433 234566899999999999999999999999987 99999641
Q ss_pred ---ccCC-CccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCC
Q 004825 562 ---IFGA-SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN 637 (728)
Q Consensus 562 ---~~~~-~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~ 637 (728)
..+. ..|+++++.|++.|.+ | ||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .||+
T Consensus 428 ~g~~~~~~~gY~~~p~~t~~~f~~-----g--wy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~ 499 (580)
T 3etc_A 428 EGKPVGLFVHYGKDPERTEETWHD-----G--YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI-QHPA 499 (580)
T ss_dssp TCCCTTCCCEETTCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT-TSTT
T ss_pred CCCCCeeeccccCCHhHHHhhcCC-----C--EEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCC
Confidence 1111 1256678888888852 3 9999999999999999999999999999999999999999995 9999
Q ss_pred eeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 638 VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 638 V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
|.+|+|++.+++..| +.++|+|++.+ +. ...+++.+.|+++++++||+||+|..|+++++||+|+||||+|++|++
T Consensus 500 V~~a~Vvg~~~~~~g-~~~~a~vv~~~-~~--~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~ 575 (580)
T 3etc_A 500 VLECAITGVPDPVRG-QVIKATIVLTK-DY--TPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRD 575 (580)
T ss_dssp EEEEEEEEEEETTTE-EEEEEEEEECT-TC--CCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC----------------
T ss_pred eeeEEEEeeeccCCC-cEEEEEEEECC-CC--CCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHh
Confidence 999999999998887 89999999987 54 234567788889999999999999999999999999999999999999
Q ss_pred HHHh
Q 004825 718 QLAQ 721 (728)
Q Consensus 718 ~~~~ 721 (728)
++.+
T Consensus 576 ~~~~ 579 (580)
T 3etc_A 576 KDQS 579 (580)
T ss_dssp ----
T ss_pred Hhhc
Confidence 8753
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-82 Score=724.74 Aligned_cols=479 Identities=18% Similarity=0.146 Sum_probs=398.8
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+|
T Consensus 28 tl~~~~~~~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailk 99 (620)
T 4dg8_A 28 TVVARFSEMAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILL 99 (620)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 456778999999999999999887 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
+|++|||+||.+|.+++.+++++++++++|+++.........+ ...+..
T Consensus 100 aGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~-----------~~~~~~-------------------- 148 (620)
T 4dg8_A 100 SGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLP-----------CVPVRH-------------------- 148 (620)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSC-----------EEEGGG--------------------
T ss_pred hCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCCc-----------eeeecc--------------------
Confidence 9999999999999999999999999999997664321110000 000000
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHH
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 417 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (728)
. .............++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++.+|++|+++++++|.
T Consensus 149 --~-~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 224 (620)
T 4dg8_A 149 --L-PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWG 224 (620)
T ss_dssp --C-CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHH
T ss_pred --C-CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHH
Confidence 0 0001111223346899999999999999999999999999887765 45678999999999999999999999999
Q ss_pred HhhhCcEEEEeC-CCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 418 SLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 418 ~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
+|+.|+++++.+ ...++..+++.|+++++|++.++|++++.|++.. ...+++||.+++|||+++++..+++.+.++
T Consensus 225 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~ 301 (620)
T 4dg8_A 225 ALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHP 301 (620)
T ss_dssp HHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCT
T ss_pred HHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCC
Confidence 999999999975 3457788999999999999999999999998753 345789999999999999999888888777
Q ss_pred CCCeEecccccccccccccCCc---ccccccccccCCCCCceEEEEcCCCCc-cCCCCCceeEEEEeccccCCCccccCc
Q 004825 497 YKPVIEYCGGTEIGGGFITGSL---LQAQSLAAFSTPAMGCKLFILGNDGCP-IPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~v~i~d~~g~~-vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
+++++|.||+||+++.++.... .......++|+|++|++++|+|+++++ +|.|++ |||+|++..+..+ |++++
T Consensus 302 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~G-Y~~~p 378 (620)
T 4dg8_A 302 RLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQG-YRNDA 378 (620)
T ss_dssp TCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSE-ETTCH
T ss_pred CeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccc-cCCCh
Confidence 8999999999999976543322 122345789999999999999999988 789987 9999977766543 46788
Q ss_pred cccccccccCCCCCCc--eeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCC
Q 004825 573 NHYDVYFSGMPSRNGQ--ILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 650 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~--~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~ 650 (728)
+.|++.|..+|. .|. +||+|||+|++++||+|+|+||+|||||++|+||+|+|||++|. .||+|.+|+|++.+++.
T Consensus 379 ~~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~~ 456 (620)
T 4dg8_A 379 ARTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERNG 456 (620)
T ss_dssp HHHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEETT
T ss_pred hhhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCCC
Confidence 899999998884 344 89999999999999999999999999999999999999999995 99999999999987764
Q ss_pred CCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 651 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
. ..++++++... . .. + ++|+++||.||+|..|+++++||+|+||||||++|++++.+
T Consensus 457 ~--~~lv~~~~~~~-~---~~----~----~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 457 V--KQLLCAWTGKA-D---AS----P----QALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp E--EEEEEEEEECT-T---CC----C----HHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred c--eEEEEEEecCh-H---HH----H----HHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 3 56677766543 1 11 1 24667899999999999999999999999999999987754
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-81 Score=708.69 Aligned_cols=516 Identities=18% Similarity=0.201 Sum_probs=389.0
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.+.....+..+++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 20 ~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 99 (549)
T 3g7s_A 20 SLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWR 99 (549)
T ss_dssp CTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 34567888899999999999987422223345999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
+|+++||+||.++.+++.+++++++++++|++..... .. ..........+++.. .....+.++
T Consensus 100 ~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 163 (549)
T 3g7s_A 100 VAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYE------NFKPVLEKTGVERVFVVG----------GEVNSLSEV 163 (549)
T ss_dssp TTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHH------HHHHHHTTSCCCEEEEET----------CSSSCHHHH
T ss_pred hCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHH------HHHHHHhhCCCcEEEEeC----------CCCcCHHHH
Confidence 9999999999999999999999999999999975421 11 222222222222211 123456666
Q ss_pred HHhhhccccCccccccCCC-CCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHH
Q 004825 337 LERVRKLKENEFAAVEQPV-EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 415 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~-~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 415 (728)
...... ........+ +++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..+
T Consensus 164 ~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~ 239 (549)
T 3g7s_A 164 MDSGSE----DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLV 239 (549)
T ss_dssp HHHSCS----CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHH
T ss_pred HhcCcc----ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHH
Confidence 554322 112223333 899999999999999999999999999999988888999999999999999999998778
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCC--CCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID--GYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
+.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|++..... ..+++++|.+++|||++++++.+++.+
T Consensus 240 ~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~ 318 (549)
T 3g7s_A 240 NLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLK 318 (549)
T ss_dssp TTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred HHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHH
Confidence 89999999999987 467889999999999999999999999998753322 256889999999999999999998877
Q ss_pred c----cC--CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccCCC
Q 004825 494 R----AL--YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGAS 566 (728)
Q Consensus 494 ~----~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~~~ 566 (728)
. ++ .++++|.||+||+++.++...........++|+|++|++++|+| ++|+++|.|+. |||+|.+..+..+
T Consensus 319 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~G 396 (549)
T 3g7s_A 319 LAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKG 396 (549)
T ss_dssp HHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSE
T ss_pred HHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhh
Confidence 6 43 37899999999999876666554445678999999999999999 88999999987 9999977666543
Q ss_pred ccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEee
Q 004825 567 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 646 (728)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~ 646 (728)
|+++++.|++.|..++ +|.+||+|||+|++++||.|+|+||.|||||++|+||+|.|||++|. .||+|.+|+|++.
T Consensus 397 -Y~~~~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~ 472 (549)
T 3g7s_A 397 -YWKREKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGK 472 (549)
T ss_dssp -ETTCTTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECC
T ss_pred -hCCChhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEee
Confidence 4678888998886443 47889999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCC-CCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhccc
Q 004825 647 PPPDGGPEQLTIVVVFKDSNY-TPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 725 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~-~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 725 (728)
+++..| +.++|+|++++ +. ...+.++++ ++|+++||.||+|..|+++++||+|+||||||++|+++..+.+++
T Consensus 473 ~~~~~g-~~~~a~vv~~~-~~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 546 (549)
T 3g7s_A 473 PDEEAG-EVPKAFIVLKP-EYRGKVDEEDII----EWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHH 546 (549)
T ss_dssp CC-------CEEEEEECS-TTTTSCCHHHHH----HHHHTTCC-----CCCCEEEECC----------------------
T ss_pred EccccC-ceEEEEEEECC-CccCcCCHHHHH----HHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccccc
Confidence 888777 88999999887 42 134555544 468899999999999999999999999999999999999886554
Q ss_pred C
Q 004825 726 S 726 (728)
Q Consensus 726 ~ 726 (728)
+
T Consensus 547 ~ 547 (549)
T 3g7s_A 547 H 547 (549)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-80 Score=699.03 Aligned_cols=503 Identities=18% Similarity=0.222 Sum_probs=420.7
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++|+++|+++...+ +++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 23 ~l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~ 96 (536)
T 3ni2_A 23 PLHSYVLENLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASH 96 (536)
T ss_dssp CHHHHHTTTGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 4567788899999999999986421 2899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
+|++++|++|.++.+++.+++++++++++|++...... + ..........++.++.. ..+...+.++.
T Consensus 97 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 163 (536)
T 3ni2_A 97 RGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEK---V--KDFARESDVKVMCVDSA--------PDGCLHFSELT 163 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHH---H--HHHHHHHTCEEEESSCC--------CTTCEETHHHH
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHH---H--HHHHhhcCceEEEecCC--------CCCccCHHHHh
Confidence 99999999999999999999999999999998754211 0 02222223333333221 12334455554
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHH----hcCCCCCCEEEecCCcchhhhH-
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGP- 412 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~- 412 (728)
..... ..+.....++++|||+|||||||.||||+++|+++++.+.+... .+++.++|++++.+|++|++++
T Consensus 164 ~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (536)
T 3ni2_A 164 QADEN----EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN 239 (536)
T ss_dssp TSCGG----GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHH
T ss_pred hcccc----ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHH
Confidence 43221 22334567899999999999999999999999999988776543 3568899999999999999998
Q ss_pred HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHH
Q 004825 413 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 492 (728)
Q Consensus 413 ~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 492 (728)
..++.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.
T Consensus 240 ~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 318 (536)
T 3ni2_A 240 SIMLCGLRVGAPILIMPK-FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVR 318 (536)
T ss_dssp HTHHHHHHHTCCEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEcCC-CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHH
Confidence 567899999999999864 5778999999999999999999999999988766677889999999999999999999999
Q ss_pred hccCCCCeEecccccccccccccCCc----ccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccCCCc
Q 004825 493 GRALYKPVIEYCGGTEIGGGFITGSL----LQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASS 567 (728)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~~~~ 567 (728)
+.+++++++|.||+||+++.++.... ......+++|+|++|++++|+| ++|+++|.|+. |||+|++..+..+
T Consensus 319 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G- 395 (536)
T 3ni2_A 319 AKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKG- 395 (536)
T ss_dssp HHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSE-
T ss_pred HHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchh-
Confidence 98888999999999999865443321 1233567899999999999999 56999999987 9999977766543
Q ss_pred cccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeec
Q 004825 568 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 647 (728)
Q Consensus 568 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~ 647 (728)
|+++++.|++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+
T Consensus 396 Y~~~p~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~ 468 (536)
T 3ni2_A 396 YLNDPEATSRTIDKE------GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGLK 468 (536)
T ss_dssp ETTCHHHHHHHBCTT------SCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEE
T ss_pred hcCChhHHHhhccCC------CceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeee
Confidence 467788888888533 39999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 648 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
++..| +.++|||+..+ +. ..+.++++ ++++++||.||+|..|+++++||+|+||||||++|++++++
T Consensus 469 ~~~~g-~~~~a~vv~~~-~~-~~~~~~l~----~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 469 DEDAG-EVPVAFVVKSE-KS-QATEDEIK----QYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ETTTE-EEEEEEEEECT-TC-CCCHHHHH----HHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred cCCCC-ceeEEEEEecC-CC-CCCHHHHH----HHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 88777 89999999876 44 45555554 46889999999999999999999999999999999998765
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-79 Score=688.68 Aligned_cols=496 Identities=20% Similarity=0.195 Sum_probs=412.9
Q ss_pred hhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Q 004825 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (728)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~ 260 (728)
++|+++++++|+++|+.....++ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 78 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGG 78 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhCCCCceEEEecCCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 45778888999999888532211 2899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhh
Q 004825 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERV 340 (728)
Q Consensus 261 ~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (728)
++||++|.+|.+++.+++++++++++|++........ .........+..+... ....+.+....
T Consensus 79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~-----~~~~~~~~~~~~~~~~----------~~~~~~~~~~~- 142 (503)
T 4fuq_A 79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIA-----AIAAKVGATVETLGPD----------GRGSLTDAAAG- 142 (503)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTH-----HHHHHHTCEEEECCTT----------SCSHHHHHHHT-
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHH-----HHHhhcCceEEEecCC----------cccccchhhhc-
Confidence 9999999999999999999999999999876432111 2222222222222211 11112221111
Q ss_pred hccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHh
Q 004825 341 RKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASL 419 (728)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (728)
...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++ ..++.++
T Consensus 143 ---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l 219 (503)
T 4fuq_A 143 ---ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTL 219 (503)
T ss_dssp ---SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHH
T ss_pred ---CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHH
Confidence 112223345678999999999999999999999999999999998899999999999999999999997 4577899
Q ss_pred hhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCC
Q 004825 420 LNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKP 499 (728)
Q Consensus 420 ~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (728)
+.|+++++.+. .++..+++.++ ++|++.++|+++..+++........++++|.+++|||++++++.+++.+.++ ++
T Consensus 220 ~~g~~~~~~~~-~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~ 295 (503)
T 4fuq_A 220 FARGSMIFLPK-FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HA 295 (503)
T ss_dssp HTTCEEEECSS-CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CC
T ss_pred HhCCEEEEcCC-CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CC
Confidence 99999999864 67788999887 8999999999999999887666677899999999999999999999988764 88
Q ss_pred eEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccCCCccccCccccccc
Q 004825 500 VIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY 578 (728)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~ 578 (728)
++|.||+||+++..+ .........+++|+|++|++++|+| ++|+++|.|+. |||+|++..+..+ |+++++.|++.
T Consensus 296 ~~~~YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~~~~t~~~ 371 (503)
T 4fuq_A 296 VLERYGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKG-YWRMPEKTKSE 371 (503)
T ss_dssp EEECCEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCC-BTTCHHHHHHT
T ss_pred ccceEcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhh-hcCChhhhHhh
Confidence 999999999987643 2223344567899999999999999 77999999997 9999977766543 46778889999
Q ss_pred cccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEE
Q 004825 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 658 (728)
Q Consensus 579 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a 658 (728)
|..+. ||+|||+|++++||.|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+++..+ +.+++
T Consensus 372 f~~~g------~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a 443 (503)
T 4fuq_A 372 FRDDG------FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVTA 443 (503)
T ss_dssp BCTTS------CEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hCCCC------CeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeEE
Confidence 97543 9999999999999999999999999999999999999999995 9999999999999988777 89999
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 659 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 659 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
+|+..+ +. ..+.+++++ +++++||.||+|..|+++++||+|+|||+||++|+++++++
T Consensus 444 ~v~~~~-~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 444 VVVRDK-GA-TIDEAQVLH----GLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEECT-TC-CCCHHHHHH----HHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEeCC-CC-CCCHHHHHH----HHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 999887 54 456555544 68899999999999999999999999999999999998764
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-80 Score=693.87 Aligned_cols=498 Identities=16% Similarity=0.176 Sum_probs=420.2
Q ss_pred hhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 004825 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (728)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG 259 (728)
.++|.++++++||++|+++.++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 4 ~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 4 LEQIEKWAAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 3567888899999999999887 99999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHh
Q 004825 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 339 (728)
Q Consensus 260 ~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 339 (728)
+++||++|.++.+++.+++++++++++|++........ .. .++. ...+.++...
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~-----------~~--~~~~-------------~~~~~~~~~~ 129 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL-----------PV--RIVS-------------EDNLKDIFFT 129 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC-----------SS--EEEE-------------THHHHHHHHH
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc-----------cc--ceec-------------hhhhhhhccc
Confidence 99999999999999999999999999999864321100 00 0000 0011222211
Q ss_pred hhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHh
Q 004825 340 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 419 (728)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L 419 (728)
.. .....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|
T Consensus 130 ~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 207 (512)
T 3fce_A 130 HK--GNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL 207 (512)
T ss_dssp TT--TCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHH
T ss_pred cc--ccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHH
Confidence 11 1112233456789999999999999999999999999999999988899999999999999999999999999999
Q ss_pred hhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCC
Q 004825 420 LNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 497 (728)
Q Consensus 420 ~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~ 497 (728)
+.|+++++.+.. .++..+++.|+++++|++.++|+++..++.........+++||.+++|||++++++.+++.+.+++
T Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~ 287 (512)
T 3fce_A 208 VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPK 287 (512)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTT
T ss_pred hCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCC
Confidence 999999998753 367789999999999999999999999988766666778999999999999999999999999888
Q ss_pred CCeEecccccccccccccCCccc----ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcc
Q 004825 498 KPVIEYCGGTEIGGGFITGSLLQ----AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 573 (728)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~ 573 (728)
++++|.||+||+++.++...... .....++|+|+++++++|+|++|+++|.|+. |||+|.++.+..+ |+++++
T Consensus 288 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~~~ 364 (512)
T 3fce_A 288 ATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVG-YLGSPE 364 (512)
T ss_dssp CEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSC-BTTCHH
T ss_pred CEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChh-hcCCch
Confidence 99999999999987655433211 2245689999999999999999999999987 9999977665543 467788
Q ss_pred ccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004825 574 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653 (728)
Q Consensus 574 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~ 653 (728)
.|++.|.. .+|.+||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|++.+++..+
T Consensus 365 ~t~~~f~~---~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~- 438 (512)
T 3fce_A 365 LTEKAFTM---IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY- 438 (512)
T ss_dssp HHHHHEEE---ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE-
T ss_pred hhhhcccc---CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc-
Confidence 88888854 236789999999999 79999999999999999999999999999995 9999999999999887766
Q ss_pred eEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhcc
Q 004825 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724 (728)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 724 (728)
+.++|+|++.+ +. ..+..++.+.|+++++++||.||+|..|+++++||+|+||||||++|++.+.+..+
T Consensus 439 ~~~~a~vv~~~-~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 439 DYLLAVVVPGE-HS-FEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEH 507 (512)
T ss_dssp EEEEEEEEECS-CC-CSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC---
T ss_pred eEEEEEEecCC-cc-ccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccc
Confidence 88999999876 43 34556677889999999999999999999999999999999999999999988554
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-79 Score=688.40 Aligned_cols=495 Identities=17% Similarity=0.146 Sum_probs=424.8
Q ss_pred hhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
.++|.++++++|+++|+++.++ ++||+||+++++++|++|++. |+++|++|+|+++|++++++++|||+++
T Consensus 4 ~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 4 LHAIQTHAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 3567888999999999999877 999999999999999999985 8899999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 338 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
|++++|++|.++.+++.+++++++++++|+++...... . . .......+.++..
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~--~---------~----------------~~~~~~~~~~~~~ 128 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA--V---------G----------------QQIQTVSAEELLE 128 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC--C---------C----------------CSSCEEEHHHHHT
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh--c---------c----------------cccceecHhhhhc
Confidence 99999999999999999999999999999976432100 0 0 0011223334333
Q ss_pred hhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHH
Q 004825 339 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 418 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (728)
.... .........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+
T Consensus 129 ~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 205 (511)
T 3e7w_A 129 NEGG---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPC 205 (511)
T ss_dssp SCSC---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHH
T ss_pred cccC---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHH
Confidence 2211 1122334567999999999999999999999999999999999889999999999999999999999999999
Q ss_pred hhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 419 LLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 419 L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
|..|+++++.+.. .++..+++.|+++++|++.++|+++..++.........++++|.+++|||++++++.+++.+.++
T Consensus 206 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~ 285 (511)
T 3e7w_A 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFP 285 (511)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred HhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCC
Confidence 9999999998643 36778999999999999999999999999876666677899999999999999999999999988
Q ss_pred CCCeEecccccccccccccCCcc----cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCc
Q 004825 497 YKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
+++++|.||+||+++.++..... ......++|+|++|++++|+|++|+++|.|+. |||+|.+..+..+ |++++
T Consensus 286 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~~ 362 (511)
T 3e7w_A 286 KAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRG-YLGEP 362 (511)
T ss_dssp TCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCC-BTTCH
T ss_pred CcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChh-hCCCc
Confidence 89999999999998765543221 12234679999999999999999999999997 9999977665442 46778
Q ss_pred cccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 573 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
+.|++.|... +|.+||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|++.+++..+
T Consensus 363 ~~t~~~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~ 437 (511)
T 3e7w_A 363 ELTEKAFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGTV 437 (511)
T ss_dssp HHHHHHEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSSC
T ss_pred ccchhhhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCCc
Confidence 8888888653 36678999999999 59999999999999999999999999999995 8999999999999887777
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
+.++|++++.+ +. ..+..++.+.|+++++++||.||+|..++++++||+|+||||||++|++.+.+..
T Consensus 438 -~~~~a~vv~~~-~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~ 505 (511)
T 3e7w_A 438 -EYLIAAIVPEE-HE-FEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRS 505 (511)
T ss_dssp -CEEEEEEEECC-CC-CSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred -eEEEEEEEecc-cc-ccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhc
Confidence 89999999887 44 3456677888999999999999999999999999999999999999999998743
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-79 Score=701.55 Aligned_cols=498 Identities=17% Similarity=0.203 Sum_probs=413.3
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++ ||++|+++.++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+|+
T Consensus 29 l~~~~~~~a~--pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~a 98 (617)
T 3rg2_A 29 LTDILTRHAA--SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98 (617)
T ss_dssp TTHHHHTTTT--CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence 4567888876 99999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC-CcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA-PLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
|++|||++|.+|.+++.++++++++++++++......... ... ....... ...+.+... .....+.+.
T Consensus 99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 168 (617)
T 3rg2_A 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGD-DFLNTFVTEHSSIRVVQLLND---------SGEHNLQDA 168 (617)
T ss_dssp TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSS-HHHHHHHHHSTTCCEEEEETC---------CSTTBHHHH
T ss_pred CeEEccCCccccHHHHHHHHhhcCceEEEecccccccccH-HHHHHHhhcCCccceeeeccc---------ccccchhhh
Confidence 9999999999999999999999999999998754210000 111 1111111 122222111 111223333
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH--HH
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP--WL 414 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~ 414 (728)
..... .........++++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|.+++ ++
T Consensus 169 ~~~~~----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 244 (617)
T 3rg2_A 169 INHPA----EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPG 244 (617)
T ss_dssp HHSCC----SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hcccc----cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHH
Confidence 32211 1223345568999999999999999999999999999999999889999999999999998877766 47
Q ss_pred HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC--CCCCCcCeeEEEeecCCCCHHHHHHHH
Q 004825 415 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLM 492 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~ 492 (728)
++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.... ....+++||.+++|||++++++.+++.
T Consensus 245 ~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 323 (617)
T 3rg2_A 245 SLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIP 323 (617)
T ss_dssp HHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHH
Confidence 9999999999999865 5677899999999999999999999998765322 233688999999999999999999998
Q ss_pred hccCCCCeEecccccccccccccCCcccccccccccCCC-CCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccC
Q 004825 493 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLN 571 (728)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~ 571 (728)
+.+ +++++|.||+||+++.++...........++|+|+ ++++++|+|++|+++|.|+. |||+|++..+..+ |+++
T Consensus 324 ~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~G-Y~~~ 399 (617)
T 3rg2_A 324 AEI-GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRG-YYKS 399 (617)
T ss_dssp HHT-CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSC-CTTC
T ss_pred HHh-CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccch-hcCC
Confidence 776 48999999999998765544333333456899997 78899999999999999997 9999987776543 4678
Q ss_pred ccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004825 572 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651 (728)
Q Consensus 572 ~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~ 651 (728)
++.|++.|..++ ||+|||+|++++||.|+|+||+|||||++|+||+|+|||++|. .||+|.+|+|++.+++..
T Consensus 400 p~~t~~~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~ 472 (617)
T 3rg2_A 400 PQHNASAFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELM 472 (617)
T ss_dssp HHHHHHHBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTT
T ss_pred hhhhhhccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCccc
Confidence 889999997654 9999999999999999999999999999999999999999995 999999999999988777
Q ss_pred CceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 652 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+ +.+++|++..+ ..+..++++ ++++ .||.||+|..|+++++||+|+||||||++|++++.+
T Consensus 473 ~-~~~~a~vv~~~----~~~~~~l~~----~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 473 G-EKSCAYLVVKE----PLRAVQVRR----FLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp E-EEEEEEEEESS----CCCHHHHHH----HHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred C-eeEEEEEEeCC----CCCHHHHHH----HHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 7 89999999876 345566555 5666 699999999999999999999999999999998865
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-79 Score=694.61 Aligned_cols=482 Identities=19% Similarity=0.205 Sum_probs=403.6
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.+. ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 40 ~l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 111 (563)
T 1amu_A 40 TIHQLFEEQVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLK 111 (563)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 356778888999999999998776 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC--CcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+|+++||++|.++.+++.+++++++++++|++..... ...... ..+..+.... ..
T Consensus 112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~---------~~~~~~~~~~~~~~~~~~-----------~~--- 168 (563)
T 1amu_A 112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH---------LIHNIQFNGQVEIFEEDT-----------IK--- 168 (563)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH---------HHTTSCCCSEEEECCCST-----------TT---
T ss_pred hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhh---------hhhhccccCceeeecchh-----------hc---
Confidence 9999999999999999999999999999999875321 111111 1111111100 00
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 415 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 415 (728)
. ...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.+
T Consensus 169 ---~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 169 ---I----REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---T----SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---c----ccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0 000111234467899999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 416 YASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
+.+|+.|+++++.+.. .++..+++.|+++++|++.++|+++..+... .+++||.+++|||++++++.+++.+
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~ 315 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKE 315 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTT
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHh
Confidence 9999999999998642 4677899999999999999999999877432 3678999999999999999998876
Q ss_pred ccCCCCeEecccccccccccccCCcc--cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccC
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLL--QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLN 571 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~ 571 (728)
. ++++|.||+||++++++..... ......++|+|++|++++|+|++|+++|.|+. |||+|++..+.. .|+++
T Consensus 316 ~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~-GY~~~ 389 (563)
T 1amu_A 316 K---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLAR-GYWKR 389 (563)
T ss_dssp T---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCC-EETTC
T ss_pred C---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhCh-hhCCC
Confidence 3 6899999999998755443221 12245689999999999999999999999986 999997665543 24678
Q ss_pred ccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004825 572 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651 (728)
Q Consensus 572 ~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~ 651 (728)
++.|++.|..+|+.+|.+||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++..
T Consensus 390 pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~ 468 (563)
T 1amu_A 390 PELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQE 468 (563)
T ss_dssp HHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTS
T ss_pred chhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCCC
Confidence 8889999998888788899999999999999999999999999999999999999999995 999999999999988877
Q ss_pred CceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHH
Q 004825 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 719 (728)
Q Consensus 652 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 719 (728)
+ +.++||++... ..+.++++ ++++++||.||+|..|+++++||+|+||||||++|++..
T Consensus 469 ~-~~~~a~vv~~~----~~~~~~l~----~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 469 Q-PYLCAYFVSEK----HIPLEQLR----QFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp C-EEEEEEEEESS----CCCHHHHH----HHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred C-eEEEEEEEeCC----CCCHHHHH----HHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 7 89999999765 34555554 468889999999999999999999999999999998754
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-79 Score=691.27 Aligned_cols=500 Identities=18% Similarity=0.192 Sum_probs=411.7
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.+. ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 26 tl~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 97 (539)
T 1mdb_A 26 TFGDLLRDRAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (539)
T ss_dssp CHHHHHHHHHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 355678888999999999998776 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC-cEEEEcCCCCCcccccCCCCcCHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+|+++||++|.++.+++.+++++++++++|+++..... ...... .+....+. ..+++..... .+.+
T Consensus 98 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 165 (539)
T 1mdb_A 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGF-DYRSLARQVQSKLPTLKNIIVAGEAE-----------EFLP 165 (539)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTE-EHHHHHHHHHHHCTTCCCEEEESCCT-----------TSEE
T ss_pred cCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccc-cHHHHHHHHHhcCCCccEEEEcCCcc-----------chhh
Confidence 99999999999999999999999999999998753210 000011 11122221 1122211100 0111
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH--
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-- 413 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-- 413 (728)
+.... ..........++++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++.
T Consensus 166 ~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 241 (539)
T 1mdb_A 166 LEDLH----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSP 241 (539)
T ss_dssp GGGCC----CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSS
T ss_pred hhhcc----ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHH
Confidence 11100 011122345679999999999999999999999999999998888888999999999999999999985
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
.++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+
T Consensus 242 ~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~ 320 (539)
T 1mdb_A 242 GVLGVLYAGGRVVLSPS-PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKA 320 (539)
T ss_dssp HHHHHHHTTCEEEECSS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHH
T ss_pred HHHHHHHhCCEEEECCC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHH
Confidence 69999999999999864 57889999999999999999999999998764444567899999999999999999999887
Q ss_pred ccCCCCeEecccccccccccccCCcccccccccccCCCCC-ceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMG-CKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~-~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
.+ +++++|.||+||+++.++...........++|+|+++ .+++|+|++|+++|.|+. |||+|++..+..+ |++++
T Consensus 321 ~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~~ 396 (539)
T 1mdb_A 321 VF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRG-YYKAE 396 (539)
T ss_dssp HT-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSS-CTTCH
T ss_pred Hh-CCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchh-hcCCh
Confidence 77 4899999999997654433222122345789999976 489999999999999987 9999977765543 46778
Q ss_pred cccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 573 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
+.|++.|..+. ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+++..|
T Consensus 397 ~~t~~~f~~~g------~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g 469 (539)
T 1mdb_A 397 EHNAASFTEDG------FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG 469 (539)
T ss_dssp HHHHHHBCTTS------CEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE
T ss_pred hhhhhhccCCC------CeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC
Confidence 88888887532 9999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhh-CCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK-LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+.++|||++.+ . ..+.+++++ +++++ ||.||+|..|+++++||+|+|||+||++|++++.+
T Consensus 470 -~~~~a~vv~~~-~--~~~~~~l~~----~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 470 -ERSCVFIIPRD-E--APKAAELKA----FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp -EEEEEEEEESS-S--CCCHHHHHH----HHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred -ceEEEEEEECC-C--CCCHHHHHH----HHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHH
Confidence 89999999874 2 245555554 57776 99999999999999999999999999999999876
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-78 Score=685.29 Aligned_cols=521 Identities=21% Similarity=0.263 Sum_probs=426.2
Q ss_pred CCCCCCCCcchHhhhhcccccCC-----CCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEE
Q 004825 167 GGQWLPGAFVNPAKNCLSVNSKR-----SLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAI 240 (728)
Q Consensus 167 ~~~w~~~~~~~~~~~~l~~~~~~-----~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai 240 (728)
+..|+.....|...++|.+++++ +||++|+++.+.. +..+++||+||+++++++|++|++. |+++||+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~---g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i 104 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGK---GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAV 104 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSS---SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCC---CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEE
Confidence 45677777778888889888877 9999999985421 1224899999999999999999999 9999999999
Q ss_pred EcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcC
Q 004825 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPA 317 (728)
Q Consensus 241 ~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~ 317 (728)
+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|+++.... .. .+....+. .++++..
T Consensus 105 ~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQ------EVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHH------HHHHHGGGCTTCCEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHH------HHHHHhhcCCceeEEEEecc
Confidence 999999999999999999999999999999999999999999999999875321 11 11222221 2333322
Q ss_pred CCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHH-HHHHHHHhcCCCC
Q 004825 318 KGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK-AAADAWCHMDIRK 396 (728)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~ 396 (728)
.. ..+...+.++...... ........++++|||+|||||||.||||+++|+.+.+ ...+. ..+++++
T Consensus 179 ~~-------~~~~~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~ 246 (570)
T 3c5e_A 179 KS-------CDGWLNFKKLLNEAST----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQA 246 (570)
T ss_dssp SC-------CTTSEEHHHHHHHSCS----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCT
T ss_pred cC-------ccccccHHHHhhcccc----cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCC
Confidence 11 1123346665543321 1222345679999999999999999999999994332 33333 6678999
Q ss_pred CCEEEecCCcchhhhHH-HHHHHhhhCcEEEEeCC-CCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCee
Q 004825 397 ADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 474 (728)
Q Consensus 397 ~d~~l~~~~~~~~~~~~-~~~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr 474 (728)
+|++++.+|++|+.+++ .++.+|..|+++++.+. ..++..+++.|+++++|++.++|++++.|++.. ....++++||
T Consensus 247 ~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr 325 (570)
T 3c5e_A 247 SDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQ 325 (570)
T ss_dssp TCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCC
T ss_pred CceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccce
Confidence 99999999999999986 68899999999999864 457889999999999999999999999998763 3345688999
Q ss_pred EEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCcee
Q 004825 475 CFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMG 554 (728)
Q Consensus 475 ~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giG 554 (728)
.+++|||++++++.+++.+.+ +++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|.|+. |
T Consensus 326 ~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~--G 401 (570)
T 3c5e_A 326 NCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE--G 401 (570)
T ss_dssp EEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC--E
T ss_pred EEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccCCCceEEEECCCCCCCCCCCC--C
Confidence 999999999999999998877 488999999999986554432 223456789999999999999999999999987 9
Q ss_pred EEEEe-----ccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHH
Q 004825 555 ELALS-----PLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIER 629 (728)
Q Consensus 555 El~v~-----~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~ 629 (728)
||+|. +..+.. .|+++++.|++.|.. +||+|||+|++++||+|+|+||+|||||++|+||+|.|||+
T Consensus 402 El~v~~~~~~g~~v~~-GY~~~~~~t~~~f~~-------~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~ 473 (570)
T 3c5e_A 402 DIGIRVKPIRPIGIFS-GYVDNPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVEN 473 (570)
T ss_dssp EEEEECSSBCCTTCCC-EETTCHHHHHHTEET-------TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHH
T ss_pred eeEEeccCCCCchhhc-cccCChhHhhhhhcC-------CccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHH
Confidence 99996 433332 246677888888852 29999999999999999999999999999999999999999
Q ss_pred HHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCc
Q 004825 630 ICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNK 709 (728)
Q Consensus 630 ~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GK 709 (728)
+|. .||+|.+|+|++.+++..| +.++|||++.+ +....+.+.+.+.|+++|+++||.||+|..|+++++||+|+|||
T Consensus 474 ~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GK 550 (570)
T 3c5e_A 474 ALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLAS-QFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGK 550 (570)
T ss_dssp HHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECG-GGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCC
T ss_pred HHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECC-cccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcC
Confidence 995 9999999999999888777 88999999876 32123445677888899999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcc
Q 004825 710 VMRRVLRKQLAQLDQ 724 (728)
Q Consensus 710 vdR~~L~~~~~~~~~ 724 (728)
++|++|++.+...+.
T Consensus 551 i~R~~L~~~~~~~s~ 565 (570)
T 3c5e_A 551 IQRAKLRDKEWKMSG 565 (570)
T ss_dssp BCHHHHHHHHTC---
T ss_pred CcHHHHHHHHHhhhh
Confidence 999999999876543
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-79 Score=685.87 Aligned_cols=495 Identities=22% Similarity=0.208 Sum_probs=409.3
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
....++|.++++++|+++|+++.+.. .++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 16 ~~l~~~l~~~a~~~p~~~A~~~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 16 KNIGWMLRQRATVSPRLQAYVEPSTD------VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp GCHHHHHHHHHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCcC------ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 34567788899999999999987542 489999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcccccCCCCcCH
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFSMKLRDGDISW 333 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~ 333 (728)
++|+++||++|.++.+++.+++++++++++|++..... .. .+...... ..+.+ .....+
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~------------~~~~~~ 151 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP------VIDAIRAQADPPGTVTDW------------IGADSL 151 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH------HHHHHHHSSSCCTTCCEE------------EEHHHH
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHH------HHHHHHhccCCccEEEEc------------cCcccH
Confidence 99999999999999999999999999999999875321 11 11111100 00000 001122
Q ss_pred HHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH
Q 004825 334 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW 413 (728)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 413 (728)
.+..... ....+.....++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++.
T Consensus 152 ~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 152 AERLRSA----AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp HHHHHHC----CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHH
T ss_pred HHHhhcc----CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHH
Confidence 2332221 122234456789999999999999999999999999999999988899999999999999999999998
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
.++.+++.|+++++.+. .++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.+
T Consensus 228 ~~~~~~~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~ 306 (517)
T 3r44_A 228 TVIFSAMRGVTLISMPQ-FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA 306 (517)
T ss_dssp HHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHHhcCeEEEEeCC-CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHh
Confidence 76666669999999864 67889999999999999999999999998765444566889999999999999999998887
Q ss_pred ccCCCCeEecccccccccccccCCccc-ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQ-AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
. +++++|.||+||+++..+...... ....+++|+|+++++++|+|++|++++.| . |||+|++..+..+ |++++
T Consensus 307 ~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~G-Y~~~p 380 (517)
T 3r44_A 307 K--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKE-YWNRP 380 (517)
T ss_dssp T--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSE-ETTCH
T ss_pred c--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhh-hCCCh
Confidence 5 589999999999987655433322 34567899999999999999999999988 4 9999977665543 46788
Q ss_pred cccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 573 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
+.|++.|.. | ||+|||+|++++||+|+|+||.|||||++|+||+|.|||++|. .||+|.+|+|++.+++..|
T Consensus 381 ~~t~~~f~~-----g--~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g 452 (517)
T 3r44_A 381 EATRDAFDN-----G--WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG 452 (517)
T ss_dssp HHHHHTEET-----T--EEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE
T ss_pred hhhHhhhcC-----C--CEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC
Confidence 889888842 3 9999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
+.+++++ ..+ +. ..+.+++++ +++++||.||+|..|+++++||+|+||||||++|++++.+.
T Consensus 453 -~~~~a~v-~~~-~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 453 -EIAAAIV-VAD-QN-EVSEQQIVE----YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp -EEEEEEE-EEC-TT-TCCHHHHHH----HHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred -ceEEEEE-ECC-CC-CCCHHHHHH----HHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhh
Confidence 7788887 444 33 355555554 68889999999999999999999999999999999999763
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-78 Score=685.82 Aligned_cols=499 Identities=16% Similarity=0.130 Sum_probs=410.8
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+.|.++++++|+++|+++.++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 6 l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 6 MIDSIEQFAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp HHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 44668888999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 338 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
|+++||++|.++.+++.+++++++++++|+++......... ....+.++..
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 128 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI-----------------------------SLVSLSEIES 128 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS-----------------------------EEEEHHHHHH
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccC-----------------------------cccchhhhhh
Confidence 99999999999999999999999999999987542111000 0112223222
Q ss_pred hhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh--cCCCCCCEEEecCCcchhhhHHHHH
Q 004825 339 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIVAWPTNLGWMMGPWLVY 416 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~ 416 (728)
.... ...........+++++||+|||||||.||||+++|+++++.+.+.... +++.+++++++..|++|+.+.+.++
T Consensus 129 ~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 207 (521)
T 3l8c_A 129 AKLA-EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWA 207 (521)
T ss_dssp HHHH-TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHH
T ss_pred cccc-cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHH
Confidence 2111 111122345678999999999999999999999999999988877665 7788999999999999999999999
Q ss_pred HHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhc
Q 004825 417 ASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494 (728)
Q Consensus 417 ~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 494 (728)
.+|..|+++++.+.. .++..+++.|.++++|++.++|+++..++........++++||.+++|||++++++.+++.+.
T Consensus 208 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 287 (521)
T 3l8c_A 208 PTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFER 287 (521)
T ss_dssp HHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHH
Confidence 999999999998643 367789999999999999999999999988766666778999999999999999999999999
Q ss_pred cCCCCeEecccccccccccccCCccc----ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCcccc
Q 004825 495 ALYKPVIEYCGGTEIGGGFITGSLLQ----AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 570 (728)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~ 570 (728)
+++++++|.||+||+++.++...... .....++|+|++|++++|+|++|+++|.|+. |||+|.++.+..+ |++
T Consensus 288 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~ 364 (521)
T 3l8c_A 288 FPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKG-YLN 364 (521)
T ss_dssp CTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSC-BTT
T ss_pred CCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChh-hcC
Confidence 88899999999999987655433211 2235689999999999999999999999987 9999977665543 467
Q ss_pred CccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCC
Q 004825 571 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 650 (728)
Q Consensus 571 ~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~ 650 (728)
+++.|++.|... ++.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++.
T Consensus 365 ~~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~ 440 (521)
T 3l8c_A 365 NPEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNKE 440 (521)
T ss_dssp CHHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSSS
T ss_pred CchHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecCC
Confidence 888888888643 36679999999999999999999999999999999999999999995 99999999999887655
Q ss_pred CCceEEEEEEEecCCCCC--CCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 651 GGPEQLTIVVVFKDSNYT--PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~--~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
.+.+.++|+|++++ +.. .....++.+.|+++++++||.||+|..|+++++||+|+||||||++|++++.+..
T Consensus 441 ~~~~~~~a~vv~~~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 441 HKVQNLLAYIVVKD-GVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp CC---CEEEEEECT-TSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred CCceEEEEEEEecC-ccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 43378999999987 431 1123456778888999999999999999999999999999999999999988743
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-80 Score=701.68 Aligned_cols=487 Identities=20% Similarity=0.224 Sum_probs=322.5
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 76 ~l~~~l~~~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 147 (570)
T 4gr5_A 76 CVHELFEAQAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLK 147 (570)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 466788999999999999999877 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
+|+++||++|.++.+++.+++++++++++|++....... .....++..... .
T Consensus 148 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~----------------~ 199 (570)
T 4gr5_A 148 AGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL------------TGTTTLYVEDEA----------------A 199 (570)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS------------CSSEEEECCC-------------------
T ss_pred HCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc------------cCCcceeeeccc----------------c
Confidence 999999999999999999999999999999987542111 011111100000 0
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHH
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 417 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (728)
.. ...........++++|||+|||||||.||||+++|+++.+.+.+ ...++++++|++++++|++|+.+.+.++.
T Consensus 200 ~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 274 (570)
T 4gr5_A 200 SD----APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFG 274 (570)
T ss_dssp --------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHH
T ss_pred cc----ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHH
Confidence 00 01112234457899999999999999999999999999876654 35568899999999999999999899999
Q ss_pred HhhhCcEEEEeCC-CCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 418 SLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 418 ~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
+|+.|+++++.+. ..++..+++.|+++++|++.++|+++..|++... ..+++||.+++|||+++++..+++.+.++
T Consensus 275 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~ 351 (570)
T 4gr5_A 275 ALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHP 351 (570)
T ss_dssp HHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCT
T ss_pred HHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCC
Confidence 9999999999864 3577789999999999999999999999987542 34789999999999999999999988888
Q ss_pred CCCeEecccccccccccccCCcc---cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcc
Q 004825 497 YKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 573 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~ 573 (728)
+++++|.||+||+++..+..... ......++|+|++|++++|+|++|+++|.|+. |||+|.+..+.. .|+++++
T Consensus 352 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~-GY~~~~~ 428 (570)
T 4gr5_A 352 ALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAH-GYVSRPA 428 (570)
T ss_dssp TCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCC-EETTCHH
T ss_pred CcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccch-hcCCCch
Confidence 89999999999998755433221 12334679999999999999999999999986 999997765543 2467788
Q ss_pred ccccccccCCC--CCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004825 574 HYDVYFSGMPS--RNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651 (728)
Q Consensus 574 ~~~~~f~~~p~--~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~ 651 (728)
.|++.|..+|+ .+|.+||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++..
T Consensus 429 ~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~ 507 (570)
T 4gr5_A 429 LTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRLG 507 (570)
T ss_dssp HHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-----------------------------------------
T ss_pred hhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCCC
Confidence 89999988775 356789999999999999999999999999999999999999999995 999999999999888777
Q ss_pred CceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHH
Q 004825 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 718 (728)
Q Consensus 652 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 718 (728)
+ +.++|||+... +....+.+ .|+++|+++||.||+|..++++++||+|+||||+|++|++.
T Consensus 508 ~-~~~~a~vv~~~-~~~~~~~~----~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 508 D-KQLVAYVVAER-ADAPPDAA----ELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -------------------------------------------------------------------
T ss_pred C-eEEEEEEEecC-CCCCcCHH----HHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 6 88999999865 22123333 45557888999999999999999999999999999999875
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-78 Score=676.16 Aligned_cols=487 Identities=20% Similarity=0.193 Sum_probs=400.1
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++||++|+++.+.+ +++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 4 l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 4 VNEMLRRAATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp HHHHHHHHHHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 456788888999999999986211 38999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEE--ecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFT--QDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
|++++|+||.++.+++.+++++++++++|+ +..... .+........ ++ .+.++
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~-~~----------------~~~~~ 132 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD--------AIFQSGSGAR-II----------------FLGDL 132 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHH--------HHHHHCCCCE-EE----------------EGGGT
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhh--------hhhhccccce-eE----------------Eecch
Confidence 999999999999999999999999999999 543210 1101111111 11 01111
Q ss_pred HHhhhcc-ccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCC--CCCCEEEecCCcchhhhH-
Q 004825 337 LERVRKL-KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDI--RKADIVAWPTNLGWMMGP- 412 (728)
Q Consensus 337 ~~~~~~~-~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~- 412 (728)
....... ...........++++|||+|||||||.||||+++|+++.+.+.+....+++ +++|++++..|++|+.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~ 212 (504)
T 1t5h_X 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFF 212 (504)
T ss_dssp EETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHT
T ss_pred hhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHH
Confidence 1110000 001111134567999999999999999999999999999998888778888 889999999999999998
Q ss_pred HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHH
Q 004825 413 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLW 490 (728)
Q Consensus 413 ~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~ 490 (728)
..++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++... ....++++||.+++|||++++++.++
T Consensus 213 ~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~ 291 (504)
T 1t5h_X 213 AVLVAALALDGTYVVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLET 291 (504)
T ss_dssp TTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHH
Confidence 678999999999999875 678889999999999999999999999987542 23456899999999999999999999
Q ss_pred HHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCC---CccCCCCCceeEEEEe-ccccCCC
Q 004825 491 LMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG---CPIPQNVPGMGELALS-PLIFGAS 566 (728)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g---~~vp~g~~giGEl~v~-~~~~~~~ 566 (728)
+.+.++ +.++|.||+||+++.+.. . ....+++|.|.++++++|+|+++ +++|.|+. |||+|. +..+..
T Consensus 292 ~~~~~~-~~~~~~YG~TE~~~~~~~--~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~- 363 (504)
T 1t5h_X 292 VHQHLP-GEKVNIYGTTEAMNSLYM--R--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFV- 363 (504)
T ss_dssp HHHHCC-SEEEEEEEETTTEEEEEE--E--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCC-
T ss_pred HHHhcC-cceeeeeccccccccccc--c--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeec-
Confidence 988875 789999999999433221 1 23457899999999999999988 99999987 999997 554432
Q ss_pred ccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEee
Q 004825 567 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 646 (728)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~ 646 (728)
.|+++++.|++.|.+ | ||+|||+|++++||+|+|+||.|||||++|+||+|.|||++|. .||+|.+|+|++.
T Consensus 364 GY~~~~~~t~~~f~~-----g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~ 435 (504)
T 1t5h_X 364 GYLNQPQATAEKLQD-----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGL 435 (504)
T ss_dssp CBTTCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEE
T ss_pred eecCCchhhhhhhcC-----C--ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEe
Confidence 356778888888832 3 9999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHHHHHH
Q 004825 647 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 720 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 720 (728)
+++..| +.++|||++++ +. ..+.+++++ ++++ +||.||+|..|+++++||+|+||||||++|+++++
T Consensus 436 ~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 436 ADQRWG-QSVTACVVPRL-GE-TLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp ECSSSS-EEEEEEEEECT-TC-CCCHHHHHH----HHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred ecCCCC-cEEEEEEEecC-Cc-CcCHHHHHH----HHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 988877 89999999887 54 355555554 6777 89999999999999999999999999999999874
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-79 Score=691.29 Aligned_cols=504 Identities=18% Similarity=0.192 Sum_probs=327.1
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 32 l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 32 LTRILTVGVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp TTHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 45678888999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC--CcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
|++++|++|.++.+++.+++++++++++|++....... ..... .+..... ..++.+... .....+.+
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 173 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFS-NNQFIDSLHDVNLSPEIILMLNHQ---------ATDFGLLD 173 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGS-SSHHHHHHHHTTCCCSEEEEETCC---------TTSEEHHH
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccccc-HHHHHHHHhhcccCcceEEEecCC---------ccccchhh
Confidence 99999999999999999999999999999987542100 00111 1111111 122222211 01222333
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH--
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-- 413 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-- 413 (728)
+...... .........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|.+++.
T Consensus 174 ~~~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 250 (544)
T 3o83_A 174 WIETPAE---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSP 250 (544)
T ss_dssp HHHSCCS---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSS
T ss_pred hhhcccc---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchH
Confidence 3332211 11122445689999999999999999999999999999999998899999999999999999888774
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
.++.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+
T Consensus 251 ~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 329 (544)
T 3o83_A 251 GALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPE 329 (544)
T ss_dssp HHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHH
T ss_pred HHHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999875 57788999999999999999999999998875555566889999999999999999999988
Q ss_pred ccCCCCeEecccccccccccccCCcccccccccccCCC-CCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
.+ +++++|.||+||+++.++...........++|+|+ ++++++|+|++|+++|.|+. |||+|+++.+..+ |++++
T Consensus 330 ~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~~ 405 (544)
T 3o83_A 330 VL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCG-YYQSP 405 (544)
T ss_dssp HH-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSC-CTTCH
T ss_pred Hh-CCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchh-hcCCh
Confidence 77 48999999999998655443333333457899996 89999999999999999987 9999977765442 46788
Q ss_pred cccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 573 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
+.|++.|..+ +||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++..|
T Consensus 406 ~~t~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g 478 (544)
T 3o83_A 406 EHNSQVFDED------NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG 478 (544)
T ss_dssp HHHHHHBCTT------CCEEEEEEEEECTTSCEEEEEEEC----------------------------------------
T ss_pred hhhhhhCCCC------CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC
Confidence 8898888643 39999999999999999999999999999999999999999995 9999999999999988877
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
+.++|+|+..+ . ..+.++++ +++++ +||.||+|..|+++++||+|+||||||++|+++++..+
T Consensus 479 -~~~~a~vv~~~-~--~~~~~~l~----~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 542 (544)
T 3o83_A 479 -EKSCAFIVSRN-P--ELKAVVLR----RHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542 (544)
T ss_dssp ------------------------------------------------------------------------
T ss_pred -ceEEEEEEeCC-C--CCCHHHHH----HHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence 88999999765 2 23344444 45666 79999999999999999999999999999999987643
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-77 Score=674.21 Aligned_cols=501 Identities=18% Similarity=0.155 Sum_probs=414.0
Q ss_pred hhh-hcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 179 AKN-CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 179 ~~~-~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
..+ +|.++++++ +++|+++.+.+ +++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 27 l~~~~l~~~~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 27 TQLRKYMERYAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHHHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred HHHHHHHhhhccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 345 566677788 99999984211 2899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC--CcEEEEcCCCCCcccccCCCCcCHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWL 334 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~ 334 (728)
+|++++|++|.++.+++.+++++++++++|+++.... .. ......+ ..++.++.... ..+...+.
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 167 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLD------KVITVQKTVTTIKTIVILDSKVD------YRGYQCLD 167 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHH------HHHHHHHHSTTCCEEEETTCSSC------BTTBCBHH
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHH------HHHHHhcCCCCCCEEEEeCCccc------ccccccHH
Confidence 9999999999999999999999999999999875421 11 2222222 22222221100 01223466
Q ss_pred HHHHhhhccccCccccccC------CCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh---cCCCCCCEEEecCC
Q 004825 335 DFLERVRKLKENEFAAVEQ------PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTN 405 (728)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~------~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~ 405 (728)
++....... ..+.... .++++|||+|||||||.||||+++|+++++.+.+.... ++++++|++++.+|
T Consensus 168 ~~~~~~~~~---~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 244 (548)
T 2d1s_A 168 TFIKRNTPP---GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVP 244 (548)
T ss_dssp HHHHHTSCT---TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred HHHhcCccc---cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEecc
Confidence 665543210 0111122 23899999999999999999999999999988877665 68899999999999
Q ss_pred cchhhhHHH-HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCC
Q 004825 406 LGWMMGPWL-VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 484 (728)
Q Consensus 406 ~~~~~~~~~-~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~ 484 (728)
++|+++++. ++.++ .|+++++.+. .++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||+++
T Consensus 245 ~~h~~g~~~~~~~~l-~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 322 (548)
T 2d1s_A 245 FHHGFGMFTTLGYLI-CGFRVVMLTK-FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLS 322 (548)
T ss_dssp TTSHHHHHHHHHHHH-TTCEEEECCC-CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHh-cCcEEEEcCC-CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCC
Confidence 999999865 66677 9999999864 67889999999999999999999999999876555567899999999999999
Q ss_pred HHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEecccc
Q 004825 485 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIF 563 (728)
Q Consensus 485 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~ 563 (728)
+++.+++.+.+++++++|.||+||+++.++... ......+++|+|+++++++|+| ++|+++|.|+. |||+|++..+
T Consensus 323 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v 399 (548)
T 2d1s_A 323 KEVGEAVARRFNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPML 399 (548)
T ss_dssp HHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC-TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTS
T ss_pred HHHHHHHHHHcCCCceeeccccccccceeeecC-cccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHH
Confidence 999999998887789999999999987655432 2234567999999999999999 68999999987 9999977665
Q ss_pred CCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEE
Q 004825 564 GASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAA 643 (728)
Q Consensus 564 ~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~V 643 (728)
..+ |+++++.|++.|..+ +||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|
T Consensus 400 ~~G-Y~~~~~~t~~~f~~~------g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V 471 (548)
T 2d1s_A 400 MKG-YVNNPEATKELIDEE------GWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGV 471 (548)
T ss_dssp CSE-ETTCHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEE
T ss_pred hhh-hcCChHHhhhcccCC------cEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH-hCCCccEEEE
Confidence 432 466778888888532 39999999999999999999999999999999999999999995 9999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccc-eEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 644 IGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVS-HVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~-~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
++.+++..| +.++|+|++.+ +. ..+.++++ ++++++|+.||+|. .|+++++||+|+|||++|++|++++.+
T Consensus 472 ~~~~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~----~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 472 AGVPDPVAG-ELPGAVVVLES-GK-NMTEKEVM----DYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp EEEEETTTE-EEEEEEEEECT-TC-CCCHHHHH----HHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred EEEEcCCCC-eeeEEEEEEcC-CC-CCCHHHHH----HHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhh
Confidence 999988777 88999999876 54 35555554 46888999999999 999999999999999999999999876
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-78 Score=731.78 Aligned_cols=562 Identities=17% Similarity=0.157 Sum_probs=335.6
Q ss_pred CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCC
Q 004825 112 YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSL 191 (728)
Q Consensus 112 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~p 191 (728)
|++ ++.+..++++|..++..+++.+......+.....-... ..... -.......++|.++++++|
T Consensus 11 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~p~~~tl~~~l~~~a~~~p 75 (979)
T 3tsy_A 11 SSG-----LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK---------LPDIY-IPNHLSLHDYIFQNISEFA 75 (979)
T ss_dssp ---------------------------------------CCCBCCS---------SCCCC-CCTTSCHHHHHTTTGGGTT
T ss_pred ccC-----cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC---------CCCCC-CCCCCCHHHHHHHHHHhCC
Confidence 666 99999999999999999988764322222211111111 01110 0112345678899999999
Q ss_pred CCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCH
Q 004825 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS 271 (728)
Q Consensus 192 d~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~ 271 (728)
|++|+++...+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||++|.+|.
T Consensus 76 d~~Al~~~~~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~ 149 (979)
T 3tsy_A 76 TKPCLINGPTG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149 (979)
T ss_dssp TSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCH
T ss_pred CCeEEEECCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCH
Confidence 99999986321 389999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccccc
Q 004825 272 LEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAV 351 (728)
Q Consensus 272 ~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (728)
+++.++++++++++||++........ .+.......++.++.... .....+...+.++...... .....+..
T Consensus 150 ~~l~~~l~~~~~~~vi~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 220 (979)
T 3tsy_A 150 AEIAKQAKASNTKLIITEARYVDKIK-----PLQNDDGVVIVCIDDNES---VPIPEGCLRFTELTQSTTE-ASEVIDSV 220 (979)
T ss_dssp HHHHHHHHHHTEEEEEECSTTTTTSH-----HHHHTSCCEEEECCCCTT---SCCCTTEEEGGGTSSCCSG-GGGGSCCS
T ss_pred HHHHHHHHHcCCeEEEEChHHHHHHH-----HHhhcCCceEEEeCCccc---ccCCcccccHHHHhhcccc-ccccCCcC
Confidence 99999999999999999986432111 222222223333322111 0111222333333222111 11122334
Q ss_pred cCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHH----hcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEE
Q 004825 352 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIA 426 (728)
Q Consensus 352 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv 426 (728)
...++++|||+|||||||.||||+++|+++++.+.+... .+++.++|++++..|++|++++ ..++.+|..|++++
T Consensus 221 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v 300 (979)
T 3tsy_A 221 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAIL 300 (979)
T ss_dssp CCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEE
T ss_pred CCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEE
Confidence 567899999999999999999999999999988776643 4568899999999999999998 45789999999999
Q ss_pred EeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccc
Q 004825 427 LYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG 506 (728)
Q Consensus 427 l~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (728)
+.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+++++++|.||+
T Consensus 301 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~ 379 (979)
T 3tsy_A 301 IMPK-FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379 (979)
T ss_dssp ECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEEC
T ss_pred EeCC-CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeech
Confidence 9864 577889999999999999999999999998766666778999999999999999999999998888999999999
Q ss_pred cccccccccCCc----ccccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEeccccCCCccccCcccccccccc
Q 004825 507 TEIGGGFITGSL----LQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG 581 (728)
Q Consensus 507 TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~ 581 (728)
||++++++.... ......+++|+|++|++++|+|+ +|+++|.|++ |||+|++..+..+ |+++++.|++.|..
T Consensus 380 TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~G-Y~~~p~~t~~~f~~ 456 (979)
T 3tsy_A 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKG-YLNNPAATAETIDK 456 (979)
T ss_dssp GGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSE-ETTCHHHHHHHBCT
T ss_pred hhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCcccc-ccCChhhhhhhccC
Confidence 999875544321 12335678999999999999995 5999999997 9999977766543 46788889888864
Q ss_pred CCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEE
Q 004825 582 MPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVV 661 (728)
Q Consensus 582 ~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv 661 (728)
+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+++..+ +.++|||+
T Consensus 457 ~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv 528 (979)
T 3tsy_A 457 D------GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVV 528 (979)
T ss_dssp T------SCEEEEEEEEECTTSCEEEEEESCC------------------------------------------------
T ss_pred C------CcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEEEEEE
Confidence 3 39999999999999999999999999999999999999999995 9999999999999888777 88999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 662 FKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 662 ~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
..+ +. ..+.++ |+++++++||.||+|..++++++||+|+||||||++|++++.+
T Consensus 529 ~~~-~~-~~~~~~----l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 582 (979)
T 3tsy_A 529 KSK-DS-ELSEDD----VKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLAN 582 (979)
T ss_dssp ------------------------------------------------------------
T ss_pred ECC-CC-CCCHHH----HHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHh
Confidence 876 43 334444 4556888999999999999999999999999999999998875
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-78 Score=678.61 Aligned_cols=497 Identities=17% Similarity=0.147 Sum_probs=317.1
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 7 tl~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 78 (509)
T 3ivr_A 7 TLADVYRRNAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVAL 78 (509)
T ss_dssp CHHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 345678889999999999999776 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+|+++||++|.+|.+++.+++++++++++|++...... .......... ..+.+... ...+.+
T Consensus 79 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 142 (509)
T 3ivr_A 79 IGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDI-----VAGVLPSLGGVKKAYAIGDG-----------SGPFAP 142 (509)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHH-----HHHHGGGCSSCCEEEESSCC-----------CSSCEE
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhh-----HHhhhcccCCceEEEEcCCC-----------CcChhh
Confidence 99999999999999999999999999999998754210 0111122221 12222111 111111
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 415 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 415 (728)
+.... ...........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..+
T Consensus 143 ~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 219 (509)
T 3ivr_A 143 FKDLA---SDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLM 219 (509)
T ss_dssp GGGTC---CCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHH
T ss_pred Hhhcc---CCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHH
Confidence 11100 111223345678999999999999999999999999999999999899999999999999999999999887
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhcc
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 495 (728)
+.+++.|++.++.. ..++..+++.|+++++|++.++|+++..|++.. ...+++++|.++.+|++ +..+++.+.+
T Consensus 220 ~~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~ 293 (509)
T 3ivr_A 220 LTLQQAGGASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATC 293 (509)
T ss_dssp HHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHC
T ss_pred HHHHHhCCcEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhc
Confidence 77777777777766 568889999999999999999999999998875 44567899999999997 7778888888
Q ss_pred CCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcccc
Q 004825 496 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY 575 (728)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~ 575 (728)
++++++|.||+||++++++..... ....++|+|++|++++|+|++|+++|.|+. |||+|++..+..+ |+++++.|
T Consensus 294 ~~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~g-Y~~~~~~t 368 (509)
T 3ivr_A 294 PNATFWATFGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKG-YWNNAAAT 368 (509)
T ss_dssp TTCEEEEEEEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCE-ETTCHHHH
T ss_pred CCCeEEcccCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCcccc-ccCCHHHh
Confidence 789999999999999765544332 223459999999999999999999999987 9999977665442 46678888
Q ss_pred ccccccCCCCCCceeEEeCceEEEecCceEEEEccc--CCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004825 576 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA--DDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653 (728)
Q Consensus 576 ~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~--d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~ 653 (728)
++.|.. +||+|||+|++++||+++|+||. ||+||++|+||+|.|||++|. .||+|.+|+|++.+++..+
T Consensus 369 ~~~f~~-------g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~- 439 (509)
T 3ivr_A 369 QHAFRN-------GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS- 439 (509)
T ss_dssp HHHTGG-------GSEEEEEEEEECTTSCEEEEEEC--------------------------------------------
T ss_pred HHHhhc-------CCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-
Confidence 888852 39999999999999999999999 999999999999999999995 9999999999999888777
Q ss_pred eEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhcccCC
Q 004825 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQNSK 727 (728)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 727 (728)
+.++++++..+ +. ..+.++ |+++++++||.||+|..|+++++||+|+||||||++|++++++..++.|
T Consensus 440 ~~~~a~v~~~~-~~-~~~~~~----l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~~ 507 (509)
T 3ivr_A 440 EAIKAVCVCKP-GE-SIAADA----LAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHHH 507 (509)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cEEEEEEEeCC-CC-CCCHHH----HHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcccccC
Confidence 88999999876 43 344444 4556888999999999999999999999999999999999998665543
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-78 Score=681.81 Aligned_cols=502 Identities=20% Similarity=0.211 Sum_probs=375.2
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 20 l~~~l~~~a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 20 LWDFLERAAALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp THHHHHHHHHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 45678888899999999996321 11248999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
|+++||++|.++.+++.+++++++++++|++.... ... ......+. .+++++... ..+...+.+
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 162 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEE 162 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHH
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHH
Confidence 99999999999999999999999999999987532 111 11122221 222222111 012233444
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHH--HHhcCCCCCCEEEecCCcchhhhHH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA--WCHMDIRKADIVAWPTNLGWMMGPW 413 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~ 413 (728)
+..... ......+++++||+|||||||.||||+++|+++++..... ...++++++|++++.+|++|+.++.
T Consensus 163 ~~~~~~-------~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 235 (541)
T 1v25_A 163 ALGEEA-------DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC 235 (541)
T ss_dssp HCCSCC-------CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT
T ss_pred HhhccC-------CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH
Confidence 332111 1134567899999999999999999999999998776552 2456789999999999999999987
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
.++.+++.|+++++.+...++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++ +
T Consensus 236 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~ 314 (541)
T 1v25_A 236 LPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-E 314 (541)
T ss_dssp HHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-H
T ss_pred HHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-H
Confidence 788999999999998765688899999999999999999999999987543334567899999999999999999988 5
Q ss_pred ccCCCCeEecccccccccccccCCccc----------ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEecccc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQ----------AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIF 563 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~ 563 (728)
.+ +++++|.||+||+++.++...... .....++|+|++|++++|+|++|+++|.+...+|||+|+++.+
T Consensus 315 ~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v 393 (541)
T 1v25_A 315 RM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWI 393 (541)
T ss_dssp HT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTS
T ss_pred Hh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcch
Confidence 55 589999999999987655443221 0235789999999999999999999985311149999977665
Q ss_pred CCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEE
Q 004825 564 GASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAA 643 (728)
Q Consensus 564 ~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~V 643 (728)
..+ |+++++.|++.|..+ | ||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .||+|.+|+|
T Consensus 394 ~~G-Y~~~p~~t~~~f~~~----g--~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V 465 (541)
T 1v25_A 394 TGG-YYGNEEATRSALTPD----G--FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEAAV 465 (541)
T ss_dssp BSS-CBTCHHHHHTTBCTT----S--CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CE
T ss_pred hcc-ccCChhhhhhhccCC----C--CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEEEE
Confidence 543 467888898888643 3 9999999999999999999999999999999999999999995 8999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 644 IGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
++.+++..+ +.++|||++.. . ..+.++++ +++++ +||.||+|..|+++++||+|+|||++|++|++++.+.
T Consensus 466 v~~~~~~~~-~~~~a~vv~~~-~--~~~~~~l~----~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 466 VAIPHPKWQ-ERPLAVVVPRG-E--KPTPEELN----EHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp EEEECSSSS-EEEEECC--------------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred EEecCCCcC-ceEEEEEEECC-C--CCCHHHHH----HHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 999998877 89999998753 1 23344444 45777 8999999999999999999999999999999988764
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-76 Score=669.38 Aligned_cols=502 Identities=23% Similarity=0.243 Sum_probs=401.3
Q ss_pred CcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Q 004825 174 AFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL 253 (728)
Q Consensus 174 ~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~l 253 (728)
...|...++|.++++ +|+++|+++.+. ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 344677788998898 999999998765 99999999999999999999999999999999999999999999
Q ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC---CcEEEEcCCCCCcccccCCC
Q 004825 254 AIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA---PLAIVIPAKGSSFSMKLRDG 329 (728)
Q Consensus 254 A~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~---~~~~~i~~~~~~~~~~~~~~ 329 (728)
||+++|+++||+++.++.+++.+++++++++++|++..... .. ....... ..++++...... ...
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 160 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQ------NVTQALESAEHDGCQLIVSQPRESE-----PRL 160 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHH------HHHHHHHCC---CCEEEEECC-----------C
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhh------HHHHHHhhccccCceEEEecccccc-----ccc
Confidence 99999999999999999999999999999999999875421 11 1111111 222222211100 001
Q ss_pred CcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHH-HHHHHHHHHhcCCCCCCEEEecCCcch
Q 004825 330 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATP-FKAAADAWCHMDIRKADIVAWPTNLGW 408 (728)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~~ 408 (728)
...+.++...... ........+++++||+|||||||.||||+++|+++ .+...+....++++++|++++..|++|
T Consensus 161 ~~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 236 (529)
T 2v7b_A 161 APLFEELIDAAAP----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFF 236 (529)
T ss_dssp CCBHHHHHHTSCC----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTS
T ss_pred ccchhhhhccCCC----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHH
Confidence 2245555442211 12233456899999999999999999999999998 565555445578899999999999999
Q ss_pred hhhHH-HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHH
Q 004825 409 MMGPW-LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDE 487 (728)
Q Consensus 409 ~~~~~-~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~ 487 (728)
++++. .++.+|..|+++++.+...++..+++.|+++++|++.++|+++..+++..........++|.+++|||++++++
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~ 316 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREI 316 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHH
Confidence 99985 57789999999999865668889999999999999999999999998764433321248999999999999999
Q ss_pred HHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCc
Q 004825 488 YLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASS 567 (728)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~ 567 (728)
.+++.+.+ +++++|.||+||++..++..... ....+++|+|++|++++|+|++|+++|.|+. |||+|++..+..+
T Consensus 317 ~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g- 391 (529)
T 2v7b_A 317 GERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVM- 391 (529)
T ss_dssp HHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCC-
T ss_pred HHHHHHHh-CCceeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCcccc-
Confidence 99998877 48999999999996554443322 2456789999999999999999999999987 9999977665433
Q ss_pred cccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeec
Q 004825 568 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 647 (728)
Q Consensus 568 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~ 647 (728)
|+++++.|++.|.. | ||+|||+|++++||+|+|+||.||+||++|+||+|.|||++|. .||+|.+|+|++.
T Consensus 392 Y~~~~~~t~~~f~~-----~--~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~- 462 (529)
T 2v7b_A 392 YWNNREKSRATFLG-----E--WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLV-QHDAVLEAAVVGV- 462 (529)
T ss_dssp BTTCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHT-TSTTEEEEEEEEE-
T ss_pred cCCChHHHHHhhhc-----C--CcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEEe-
Confidence 56677888888852 2 9999999999999999999999999999999999999999995 9999999999998
Q ss_pred CCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 648 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
++..+ +.++|+++..+ +. ...+.+.+.|+++++++||.||+|..|+++++||+|+|||++|++|++
T Consensus 463 ~~~~~-~~~~a~vv~~~-~~--~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 463 DHGGL-VKTRAFVVLKR-EF--APSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EETTE-EEEEEEEEECT-TC--CCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred cCCCc-eEEEEEEEecC-CC--CcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 55555 78999999876 33 112335567888899999999999999999999999999999999986
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-78 Score=683.71 Aligned_cols=509 Identities=18% Similarity=0.163 Sum_probs=321.3
Q ss_pred HhhhhcccccCCCCCCeEEE---EeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIR---WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLA 254 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~---~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA 254 (728)
...++|.++++++|+++|++ +... .+++||+||+++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 21 tl~~~l~~~a~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 94 (550)
T 3rix_A 21 TAGEQLHKAMKRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLG 94 (550)
T ss_dssp CHHHHHHHHHHHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHH
T ss_pred CHHHHHHHHHHhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHH
Confidence 45567888888999999876 3221 13899999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcccccCCCCc
Q 004825 255 IVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFSMKLRDGDI 331 (728)
Q Consensus 255 ~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~ 331 (728)
|+++|++++|++|.++.+++.+++++++++++|+++.... .. ......+. .+++++.... ..+..
T Consensus 95 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 162 (550)
T 3rix_A 95 ALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQ------KILNVQKKLPIIQKIIIMDSKTD------YQGFQ 162 (550)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHH------HHHHHHHHCTTCCEEEETTCSSC------BTTBC
T ss_pred HHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHH------HHHHHHhhCCCcceEEEEcCCcc------ccCcc
Confidence 9999999999999999999999999999999999875421 11 22222222 2222222111 12345
Q ss_pred CHHHHHHhhhcccc--Cccc-cccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh---cCCCCCCEEEecCC
Q 004825 332 SWLDFLERVRKLKE--NEFA-AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTN 405 (728)
Q Consensus 332 ~~~~~~~~~~~~~~--~~~~-~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~ 405 (728)
.+.++......... .... .....++++|||+|||||||.||||+++|+++++.+.+.... +++.++|++++..|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 242 (550)
T 3rix_A 163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242 (550)
T ss_dssp BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEech
Confidence 56666654432111 0111 122345789999999999999999999999999888776554 57889999999999
Q ss_pred cchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCH
Q 004825 406 LGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV 485 (728)
Q Consensus 406 ~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~ 485 (728)
++|+++++.++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 243 ~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~ 321 (550)
T 3rix_A 243 FHHGFGMFTTLGYLICGFRVVLMYR-FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSK 321 (550)
T ss_dssp TTSHHHHHHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCH
Confidence 9999999989999999999999864 577889999999999999999999999998876666778999999999999999
Q ss_pred HHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccC
Q 004825 486 DEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFG 564 (728)
Q Consensus 486 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~ 564 (728)
++.+++.+.++...++|.||+||+++.++.... .....+++|+|+++++++|+| ++|+++|.|+. |||+|++..+.
T Consensus 322 ~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~ 398 (550)
T 3rix_A 322 EVGEAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIM 398 (550)
T ss_dssp HHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSC
T ss_pred HHHHHHHHHcCCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcc
Confidence 999999988875569999999999976655443 334568999999999999999 46999999987 99999777655
Q ss_pred CCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEE
Q 004825 565 ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAI 644 (728)
Q Consensus 565 ~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv 644 (728)
.+ |+++++.|++.|..+ +||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+|+|+
T Consensus 399 ~G-Y~~~~~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv 470 (550)
T 3rix_A 399 SG-YVNNPEATNALIDKD------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVA 470 (550)
T ss_dssp SE-ETTCHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEC------------------------------------
T ss_pred hh-hcCChhhhhhhcCCC------CCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHH-hCCCcceEEEE
Confidence 42 467788888888543 39999999999999999999999999999999999999999995 99999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCccc-ceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 645 GVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P-~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
+.+++..| +.++++|+..+ +. ..+.+++++ +++++|+.|++| ..++++++||+|+||||||++|++++.+..
T Consensus 471 ~~~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 471 GLPDDDAG-ELPAAVVVLEH-GK-TMTEKEIVD----YVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeecCCCC-ceEEEEEEecC-CC-CCCHHHHHH----HHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence 99988777 88999999876 44 344444444 677788888655 579999999999999999999999998733
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-76 Score=660.35 Aligned_cols=474 Identities=22% Similarity=0.228 Sum_probs=375.2
Q ss_pred hHhhhhcccccCCCCC-CeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLD-DIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAI 255 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~ 255 (728)
....+.|.++++++|+ ++|+++.++ ++||+||+++++++|++|+ .|++|+|+++|++++++++|||
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~ 88 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAA 88 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHH
Confidence 3455667888888887 999999887 9999999999999999875 3889999999999999999999
Q ss_pred HHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 256 lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+++|+++||+||.+|.+++.+++++++++++|++.... .. .... ....+.+...
T Consensus 89 ~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~--~~~~--~~~~~~~~~~----------------- 142 (505)
T 3nyq_A 89 LLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LP--PALG--ALERVDVDVR----------------- 142 (505)
T ss_dssp HHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CC--GGGT--TSEEEECCTT-----------------
T ss_pred HHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cc--hhhc--cccccccccc-----------------
Confidence 99999999999999999999999999999999986421 00 0000 0011111100
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WL 414 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~ 414 (728)
...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|..+. +.
T Consensus 143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 214 (505)
T 3nyq_A 143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG 214 (505)
T ss_dssp --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence 000112234567899999999999999999999999999999998888999999999999999999887 57
Q ss_pred HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC---CCCCCcCeeEEEeecCCCCHHHHHHH
Q 004825 415 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI---DGYDWSSIRCFGSTGEASNVDEYLWL 491 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~---~~~~l~~lr~i~~gGe~l~~~~~~~~ 491 (728)
++.+|..|+++++.+. .++..+++.+ ++++|+++++|+++..|++.... ....++++|.+++|||++++++.+++
T Consensus 215 ~~~~l~~G~~~~~~~~-~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~ 292 (505)
T 3nyq_A 215 ILGPLRRGGSVRHLGR-FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERI 292 (505)
T ss_dssp THHHHHHTCEEEECSS-CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHH
T ss_pred HHHHHhcCCEEEECCC-CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHH
Confidence 8999999999998754 5677888888 88999999999999999874221 12346789999999999999999998
Q ss_pred HhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCC---CCCceeEEEEeccccCCCcc
Q 004825 492 MGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQ---NVPGMGELALSPLIFGASST 568 (728)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~---g~~giGEl~v~~~~~~~~~~ 568 (728)
.+.+ +++++|.||+||+++.++... .......++|+|++|++++|+|++|++++. |+. |||+|++..+..+ |
T Consensus 293 ~~~~-~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~G-Y 367 (505)
T 3nyq_A 293 AAAT-GRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTE-Y 367 (505)
T ss_dssp HHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCE-E
T ss_pred HHhc-CCeeecccchhhcccccccCC-CCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhh-h
Confidence 8776 489999999999987654433 233456789999999999999999999886 765 9999977766543 4
Q ss_pred ccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEccc-CCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeec
Q 004825 569 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA-DDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 647 (728)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~-d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~ 647 (728)
+++++.|++.|..++ ||+|||+|++++||.|+|+||+ |++||++|+||+|.|||++|. .||+|.+|+|++.+
T Consensus 368 ~~~~~~t~~~f~~~g------~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~-~~p~V~~a~Vv~~~ 440 (505)
T 3nyq_A 368 LNRPDATAAAFTEDG------FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTGEP 440 (505)
T ss_dssp TTCHHHHHHTBCTTS------CEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEE
T ss_pred CCChhHhhhhhcCCC------CCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHH-HCcCccEEEEEeeE
Confidence 677888999997543 9999999999999999999997 699999999999999999995 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 648 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
++..+ +.++|||++.+ +....+.+++ +++|+++||.||+|..|+++++||+|+||||||++|++
T Consensus 441 ~~~~g-~~l~a~vv~~~-~~~~~~~~~l----~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 441 DPDLG-ERIVAWIVPAD-PAAPPALGTL----ADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp ETTTE-EEEEEEEEESS-TTSCCCHHHH----HHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCCCC-cEEEEEEEECC-CCCCCCHHHH----HHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 88877 89999999876 3213444554 45688899999999999999999999999999999986
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-74 Score=649.64 Aligned_cols=494 Identities=18% Similarity=0.183 Sum_probs=376.2
Q ss_pred hhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 004825 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (728)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG 259 (728)
.++|.++++++||++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|
T Consensus 4 ~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 4 DFWLYKQAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCHHHHHHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 3567788899999999999877 999999999999999999987 89999999999999999999999999
Q ss_pred cEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHh
Q 004825 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 339 (728)
Q Consensus 260 ~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 339 (728)
++++|++|.++.+++.+++++++++++|++............. ..................................
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL---DDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPK 149 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET---TC--------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc---ccceeeeeecccccccccccccccccchhhcccc
Confidence 9999999999999999999999999999988654322111000 0000000000000000000000000000001000
Q ss_pred hhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHh
Q 004825 340 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 419 (728)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L 419 (728)
. ...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|++++..++.++
T Consensus 150 ~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l 226 (501)
T 3ipl_A 150 E---SPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226 (501)
T ss_dssp C---CHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred C---CcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHH
Confidence 0 0011122345789999999999999999999999999999999988899999999999999999999998899999
Q ss_pred hhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCC
Q 004825 420 LNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKP 499 (728)
Q Consensus 420 ~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (728)
+.|+++++.+. .++..+++.|+++++|++.++|++++.|++...... .+||.+++|||++++++.+++.+ + +++
T Consensus 227 ~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~-~~~ 300 (501)
T 3ipl_A 227 IEGFTVRIVDK-FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-Y-NLP 300 (501)
T ss_dssp HHTCEEEECSS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-T-TCC
T ss_pred HcCceEEeCCC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-h-CCC
Confidence 99999999874 678899999999999999999999999988654332 28999999999999999988876 3 589
Q ss_pred eEecccccccccccccCCcc-cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccc
Q 004825 500 VIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY 578 (728)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~ 578 (728)
++|.||+||+++.++..... ......++|+|++|++++|+|++ .|+. |||+|.+..+..+ |+++++.+..
T Consensus 301 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~--GEl~v~g~~~~~g-Y~~~~~~t~~- 371 (501)
T 3ipl_A 301 IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGH--GELMIKGANVMNG-YLYPTDLTGT- 371 (501)
T ss_dssp EEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCC--EEEEEESTTSCSC-CSBSTTCCCS-
T ss_pred EeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCc--cEEEEeccchhhh-hCcChhhcch-
Confidence 99999999998755443332 22356789999999999999986 3443 9999977665543 4566666665
Q ss_pred cccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEE
Q 004825 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 658 (728)
Q Consensus 579 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a 658 (728)
|. +| ||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|++.+++..| +.+++
T Consensus 372 ~~-----~g--~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~a 442 (501)
T 3ipl_A 372 FE-----NG--YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPKL 442 (501)
T ss_dssp EE-----TT--EEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hc-----CC--ceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEEE
Confidence 42 23 9999999999999999999999999999999999999999995 9999999999999988877 88999
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 659 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 659 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
+++... ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++...+-
T Consensus 443 ~v~~~~----~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 443 YFVSES----DISKAQLIA----YLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEEESS----CCCHHHHHH----HHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EEEeCC----CCCHHHHHH----HHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 998755 345555555 67888999999999999999999999999999999887653
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-75 Score=660.12 Aligned_cols=504 Identities=16% Similarity=0.188 Sum_probs=309.8
Q ss_pred hhhhcccccCCCCCCeEEEEeccC--CCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEG--DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~--~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
..++|.++++++||++|+++.+.. ......+++||+||+++++++|++|++.|+ +||+|+|+++|++++++++|||+
T Consensus 22 l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~ 100 (562)
T 3ite_A 22 PSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIM 100 (562)
T ss_dssp TTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHH
Confidence 346688899999999999986521 111223589999999999999999999999 79999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
|+|+++||++|.++.+++.+++++++++++|+++....... ......++.. ....+.+.
T Consensus 101 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~-----------~~~~~~~~ 159 (562)
T 3ite_A 101 KSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE----------LPPETKVLDT-----------KNQSFIEN 159 (562)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC----------CCTTCEEEET-----------TCHHHHHH
T ss_pred HhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc----------cCccceeecc-----------cchhhhhh
Confidence 99999999999999999999999999999999875321110 0001111111 11122222
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh--------cCCCCCCEEEecCCcch
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--------MDIRKADIVAWPTNLGW 408 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~--------~~~~~~d~~l~~~~~~~ 408 (728)
..... .........++++|||+|||||||.||||+++|+++.+.+.+.... +.+...+++++..+++|
T Consensus 160 ~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (562)
T 3ite_A 160 LSTQD----TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF 235 (562)
T ss_dssp HHHSC----CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred ccccc----ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence 22111 1122234567889999999999999999999999998877665433 45788999999999999
Q ss_pred hhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHH
Q 004825 409 MMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 488 (728)
Q Consensus 409 ~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~ 488 (728)
+.++..++.++..|+++++.+....+..+.+.++++++|++.++|++++.+... ..++++||.+++|||++++++.
T Consensus 236 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~ 311 (562)
T 3ite_A 236 DVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQ 311 (562)
T ss_dssp THHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHH
T ss_pred hhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHH
Confidence 999999999999999999876433446788999999999999999999887432 3457899999999999999999
Q ss_pred HHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCC-CCccCCCCCceeEEEEeccccCCCc
Q 004825 489 LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASS 567 (728)
Q Consensus 489 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~~ 567 (728)
+++.+.+ +++++|.||+||+++.++...........++|+|+++++++|+|++ ++++|+|+. |||+|.+..+..+
T Consensus 312 ~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G- 387 (562)
T 3ite_A 312 QIWSSSD-RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANG- 387 (562)
T ss_dssp HHHTTCS-SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCE-
T ss_pred HHHhhCC-CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchh-
Confidence 9887754 5899999999999876655444444556789999999999999964 889999987 9999977665432
Q ss_pred cccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCC-CCeeeeEEEee
Q 004825 568 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD-SNVLETAAIGV 646 (728)
Q Consensus 568 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~-p~V~~~~Vv~~ 646 (728)
|+++++.|+..|. +|.+||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .| |.+.+++|++.
T Consensus 388 Y~~~p~~t~~~~~-----~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~ 461 (562)
T 3ite_A 388 YLNRPDAKGFCDI-----NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLL 461 (562)
T ss_dssp ESSCTTCCSEEEE-----TTEEEEEEEEEEEECTTSCEEEEEEC------------------------------------
T ss_pred hCCCccccccccC-----CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEe
Confidence 4566776664432 47789999999999999999999999999999999999999999996 65 88899998888
Q ss_pred cCCCCCceEEEEEEEecCCCCCC--------CCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCC-CCCchhHHHHHH
Q 004825 647 PPPDGGPEQLTIVVVFKDSNYTP--------PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRT-ATNKVMRRVLRK 717 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~--------~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t-~~GKvdR~~L~~ 717 (728)
+++..+ +..+++++... +... .+...+.+.|+++|+++||.||+|..|+++++||+| +|||+||++|++
T Consensus 462 ~~~~~~-~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~ 539 (562)
T 3ite_A 462 NHPGTS-KQFLVSFVASS-GAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEH 539 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCc-ceEEEEEEecc-cccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHH
Confidence 887776 44444444433 2100 111234457788899999999999999999999998 899999999999
Q ss_pred HHHhhcc
Q 004825 718 QLAQLDQ 724 (728)
Q Consensus 718 ~~~~~~~ 724 (728)
++++++.
T Consensus 540 ~~~~~~~ 546 (562)
T 3ite_A 540 MFHTLSL 546 (562)
T ss_dssp -------
T ss_pred HHhccCH
Confidence 9987654
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-74 Score=656.66 Aligned_cols=506 Identities=15% Similarity=0.115 Sum_probs=400.7
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 13 l~~~l~~~a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 13 LVDVVRLRALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 45678889999999999998642 11249999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCC---HHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC--CcEEEEcCCCCCcccccCCCCcCH
Q 004825 259 GYIVVSIADSFA---SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISW 333 (728)
Q Consensus 259 G~~~vpl~p~~~---~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~ 333 (728)
|+++||++|.++ .+++.++++++++++++++.......... ...... .....+. .
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~----------------~ 148 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD----ELNTNPKFLKIPAIA----------------L 148 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC---------CCEETTEEEEE----------------G
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHh----hhhhcccccccceee----------------c
Confidence 999999999884 57899999999999999987532110000 000000 0011110 0
Q ss_pred HHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH
Q 004825 334 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW 413 (728)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 413 (728)
+++... ...........++++|||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|++++.
T Consensus 149 ~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 224 (590)
T 3kxw_A 149 ESIELN----RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLI 224 (590)
T ss_dssp GGCCGG----GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH
T ss_pred hhcccc----ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhH
Confidence 000000 0111233456789999999999999999999999999999999998999999999999999999999997
Q ss_pred H-HHHHhhhCcEEEEeCCCC---CcchHHHHHHHhCCcEEEecHHHHHHHHcC---CCCCCCCCcCeeEEEeecCCCCHH
Q 004825 414 L-VYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRTWKST---NCIDGYDWSSIRCFGSTGEASNVD 486 (728)
Q Consensus 414 ~-~~~~L~~G~~lvl~~~~~---~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~---~~~~~~~l~~lr~i~~gGe~l~~~ 486 (728)
. ++.+|+.|+++++.+... ++..+++.|+++++|++.++|+++..+++. ......++++||.+++|||+++++
T Consensus 225 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~ 304 (590)
T 3kxw_A 225 GCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREE 304 (590)
T ss_dssp TTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHH
T ss_pred HHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHH
Confidence 5 889999999999986432 678899999999999999999999998765 223456789999999999999999
Q ss_pred HHHHHHhccC-----CCCeEecccccccccccccCCcc--------------------------cccccccccCCCCCce
Q 004825 487 EYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLL--------------------------QAQSLAAFSTPAMGCK 535 (728)
Q Consensus 487 ~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~~~ 535 (728)
+.+++.+.++ +.+++|.||+||+++.++..... ......++|+|+++
T Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~-- 382 (590)
T 3kxw_A 305 TMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE-- 382 (590)
T ss_dssp HHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--
T ss_pred HHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--
Confidence 9999887763 35799999999999866543211 11234689999998
Q ss_pred EEEEcCC-CCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCC--CCceeEEeCceEEEecCceEEEEcccC
Q 004825 536 LFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSR--NGQILRRHGDVFERTSGGYYRAHGRAD 612 (728)
Q Consensus 536 v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~--~g~~~y~TGDl~~~~~dG~l~~~GR~d 612 (728)
++|+|++ ++++|.|+. |||+|.++.+..+ |+++++.|++.|..++.. +|.+||+|||+|+++ ||.|+|+||+|
T Consensus 383 v~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~d 458 (590)
T 3kxw_A 383 VKIIDPDTLIPCDFDQV--GEIWVQSNSVAKG-YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIK 458 (590)
T ss_dssp EEEECTTTCCBCCTTBC--EEEEEESTTSCCC-BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESS
T ss_pred eEEEcCCCCcCCCCCCE--EEEEEeCCccccc-ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCcc
Confidence 8899987 999999987 9999977666543 467888999999876543 355699999999999 99999999999
Q ss_pred CeeecCceeecHHHHHHHHhcCCCCee--eeEEEeecCCCCCceEEEEEEEecCCCC-CCCCHHHHHHHHHHHHHhhCCC
Q 004825 613 DTMNLGGIKVSSVEIERICNAVDSNVL--ETAAIGVPPPDGGPEQLTIVVVFKDSNY-TPPDLNQLRMSFNSAVQKKLNP 689 (728)
Q Consensus 613 ~~iki~G~ri~~~eIE~~l~~~~p~V~--~~~Vv~~~~~~~g~~~l~a~vv~~~~~~-~~~~~~~l~~~l~~~l~~~Lp~ 689 (728)
||||++|+||+|.|||++|...||.|. +|+|++++++. + +.++++++..+ +. ...+.++++++++++|...+..
T Consensus 459 d~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~-~~~~~~v~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~ 535 (590)
T 3kxw_A 459 DLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-E-YKLTVMCEVKN-RFMDDVAQDNLFNEIFELVYENHQL 535 (590)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-E-EEEEEEEEESC-TTCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-C-ceEEEEEEecc-ccccchhHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999944899998 89999988765 4 78999998876 32 1234456666666665543322
Q ss_pred CcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 690 LFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 690 ~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
.+.+..++.+++||+|+||||+|++|++++.+
T Consensus 536 p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 536 EVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp CCCEEEEEETTCSCCCSCHHHHHHHHHHHHHH
T ss_pred ceeEEEEECCCccCcCCCcHHHHHHHHHHHHc
Confidence 23334566678999999999999999999976
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-58 Score=513.64 Aligned_cols=399 Identities=17% Similarity=0.119 Sum_probs=310.9
Q ss_pred HhhhhcccccCCCCCCeEEEEeccC-CCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEG-DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
...++|.++++++||++|+++.+.. +..+..+++||+||+++++++|++|+++|+ +||+|+|+++|++++++++|||+
T Consensus 25 tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~ 103 (480)
T 3t5a_A 25 SLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGAL 103 (480)
T ss_dssp CHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHH
Confidence 3556788899999999999997621 112334699999999999999999999996 99999999999999999999999
Q ss_pred HcCcEEEecCC---CCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC----CcEEEEcCCCCCcccccCCC
Q 004825 257 LAGYIVVSIAD---SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA----PLAIVIPAKGSSFSMKLRDG 329 (728)
Q Consensus 257 kaG~~~vpl~p---~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~ 329 (728)
++|+++|||++ .++.+++.+++++++++++|++........ ....... ...+.++....
T Consensus 104 ~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------- 169 (480)
T 3t5a_A 104 QAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV-----QHVARRPGESPPSIIEVDLLDL--------- 169 (480)
T ss_dssp HTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH-----HTCC------CCEEEEGGGSCT---------
T ss_pred HhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH-----HHHhccccccccceeEeccccc---------
Confidence 99999999999 889999999999999999999875421000 1000000 01111110000
Q ss_pred CcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCC------CCEEEec
Q 004825 330 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRK------ADIVAWP 403 (728)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~d~~l~~ 403 (728)
............++++|||+|||||||.||||+++|+++++.+.+....+.+.. +|+++++
T Consensus 170 -------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 236 (480)
T 3t5a_A 170 -------------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSW 236 (480)
T ss_dssp -------------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEEC
T ss_pred -------------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEe
Confidence 001112234456789999999999999999999999999999988888888887 9999999
Q ss_pred CCcchhhhH-HHHHHHhhhCcEEEEeCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcC----CCCCCCCCcCeeE
Q 004825 404 TNLGWMMGP-WLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKST----NCIDGYDWSSIRC 475 (728)
Q Consensus 404 ~~~~~~~~~-~~~~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~----~~~~~~~l~~lr~ 475 (728)
+|++|++++ +.++.+|+.|+++++.+.. .++..+++.|+++++| +..+|+++..++.. ......++++||.
T Consensus 237 ~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~ 315 (480)
T 3t5a_A 237 LPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILT 315 (480)
T ss_dssp CCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCE
T ss_pred CCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhhe
Confidence 999999997 5789999999999998643 3678899999999999 88899988887653 2234567899999
Q ss_pred EEeecCCCCHHHHHHHHhccC-----CCCeEecccccccccccccCCccc------------------------cccccc
Q 004825 476 FGSTGEASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQ------------------------AQSLAA 526 (728)
Q Consensus 476 i~~gGe~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~ 526 (728)
+++|||++++++.+++.+.++ ++.++|.||+||+++.++...... .....+
T Consensus 316 i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 395 (480)
T 3t5a_A 316 ILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLIS 395 (480)
T ss_dssp EEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEEC
T ss_pred eeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeee
Confidence 999999999999999988773 457999999999998665544321 123468
Q ss_pred ccCCCCCceEEEEcCC-CCccCCCCCceeEEEEeccccCCCccccCccccccccccCCC-----CCCceeEEeCceEEEe
Q 004825 527 FSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPS-----RNGQILRRHGDVFERT 600 (728)
Q Consensus 527 iG~p~~~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~-----~~g~~~y~TGDl~~~~ 600 (728)
+|+|++ ++++|+|++ |+++|.|+. |||+|++..+..+ |+++++.|++.|..++. .++++||+|||+|+++
T Consensus 396 ~G~p~~-~~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d 471 (480)
T 3t5a_A 396 YMLPRS-PIVRIVDSDTCIECPDGTV--GEIWVHGDNVANG-YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT 471 (480)
T ss_dssp EECCSS-SEEEEEETTTTEECCTTBC--EEEEEESTTSCCC-BTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE
T ss_pred cCcccC-CEEEEEcCCCCcCCCCCCE--EEEEEeCCccccc-cccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE
Confidence 999999 999999987 899999987 9999977665543 46788899998864332 2356799999999997
Q ss_pred cCceEEEEcc
Q 004825 601 SGGYYRAHGR 610 (728)
Q Consensus 601 ~dG~l~~~GR 610 (728)
||+|+|+||
T Consensus 472 -dG~l~~~GR 480 (480)
T 3t5a_A 472 -DGKMFIIGR 480 (480)
T ss_dssp -TTEEEECC-
T ss_pred -CCEEEEeCC
Confidence 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-56 Score=473.55 Aligned_cols=319 Identities=17% Similarity=0.161 Sum_probs=268.0
Q ss_pred CCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCc
Q 004825 355 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLG 434 (728)
Q Consensus 355 ~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~ 434 (728)
.+++|||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|++++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 4789999999999999999999999999999999899999999999999999999999999999999999999875433
Q ss_pred chHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccc
Q 004825 435 SGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFI 514 (728)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (728)
.++.|+++++|++.++|+++..|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 4567889999999999999999988654 34568999999999999999999988763 589999999999987655
Q ss_pred cCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeC
Q 004825 515 TGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG 594 (728)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TG 594 (728)
.... .....+++|.|.||+++.+.+ . |||++.+.... .+||+||
T Consensus 190 ~~~~-~~~~~g~~~~~~pgv~~~~~~----------~--Gel~~~g~~~~-----------------------~g~~~TG 233 (358)
T 4gs5_A 190 LKAL-NGPEASELYVFLPGIQYGVDE----------R--GCLHISGAVTN-----------------------GQTVQTN 233 (358)
T ss_dssp EEEC-SSTTCCSCEEECTTCEEEECT----------T--SEEEEESGGGT-----------------------TCCEEEE
T ss_pred cccc-cccccceeeccCCCeEEEecC----------c--CceEEeccccc-----------------------CcceecC
Confidence 4333 334457889999998887643 2 89998654221 1299999
Q ss_pred ceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHh--cCCCCeeeeEEE-eecCCCCCceEEEEEEEecCCCCCCCC
Q 004825 595 DVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN--AVDSNVLETAAI-GVPPPDGGPEQLTIVVVFKDSNYTPPD 671 (728)
Q Consensus 595 Dl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~--~~~p~V~~~~Vv-~~~~~~~g~~~l~a~vv~~~~~~~~~~ 671 (728)
|+|++++|| ++|+||+||+||++|+||+|.|||++|. ..||+|.+|+|+ ..+++..| +.++|+|+...
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~------- 304 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAM------- 304 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCC-------
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCC-------
Confidence 999999988 6778999999999999999999998773 158999999887 56677777 78888887544
Q ss_pred HHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhcc
Q 004825 672 LNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724 (728)
Q Consensus 672 ~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 724 (728)
.+...+.|+++|+++||.||+|..|+++++||+|+||||||++|++++++.++
T Consensus 305 ~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~~ 357 (358)
T 4gs5_A 305 PEALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSSN 357 (358)
T ss_dssp CHHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC----
T ss_pred CCcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhcC
Confidence 13345567778999999999999999999999999999999999999877543
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-49 Score=434.23 Aligned_cols=326 Identities=21% Similarity=0.222 Sum_probs=257.3
Q ss_pred cCCC-CCceEEEecCCCCCCCceEEecCcHHHHHHHHH---HHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEE
Q 004825 352 EQPV-EAFTNILFSSGTTGEPKAIPWTNATPFKAAADA---WCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIA 426 (728)
Q Consensus 352 ~~~~-~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv 426 (728)
..++ ++++||+|||||||.||||+++|+++.+.+.+. ...++++++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997766554 344689999999999998755554 57889999999999
Q ss_pred EeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCC--CCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecc
Q 004825 427 LYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYC 504 (728)
Q Consensus 427 l~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (728)
+.+. .++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAAA-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCCS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCCC-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 8764 4678899999999999999999999999876332332 378999999999999999999998887 58999999
Q ss_pred cccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCC
Q 004825 505 GGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 583 (728)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p 583 (728)
|+||+++.++.... .....+|.|.+++.++|+| ++|+++|.|+. |||+|.+.. ++.| |
T Consensus 239 G~TE~~~~~~~~~~---~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~~-------------~~~~---~ 297 (436)
T 3qov_A 239 GMTEMNGPGVAFEC---QEQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTLD-------------REMM---P 297 (436)
T ss_dssp EEGGGTEEEEEEEC---TTCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEESS-------------CCSS---C
T ss_pred cchhhcCCeeEEec---CCCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEeccC-------------cCCc---e
Confidence 99999543222211 1122367788899999999 78999999987 999997521 1122 1
Q ss_pred CCCCceeEEeCceEEEecCc------e---EEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004825 584 SRNGQILRRHGDVFERTSGG------Y---YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 654 (728)
Q Consensus 584 ~~~g~~~y~TGDl~~~~~dG------~---l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~ 654 (728)
..||+|||+|++++|| + ++|+||.||+||++|++|+|.|||++|. .||+|.+++|++.+++..+ +
T Consensus 298 ----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-~ 371 (436)
T 3qov_A 298 ----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-D 371 (436)
T ss_dssp ----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-E
T ss_pred ----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-c
Confidence 1299999999999998 5 6999999999999999999999999995 9999999999998877666 8
Q ss_pred EEEEEEEecCCCCCCCC----HHHHHHHHHHHHHhhCCCC-cccceEEECC--CCCCCCCCchhHHH
Q 004825 655 QLTIVVVFKDSNYTPPD----LNQLRMSFNSAVQKKLNPL-FKVSHVVPLP--SLPRTATNKVMRRV 714 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~----~~~l~~~l~~~l~~~Lp~~-~~P~~i~~v~--~lP~t~~GKvdR~~ 714 (728)
.++++|++.. .. .+ .++++++ |+++|+.+ ++|..+++++ +||+|+ ||++|..
T Consensus 372 ~l~a~v~~~~-~~--~~~~~~~~~l~~~----l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 372 EMIVEVELSD-LS--TDNYIELEKIRRD----IIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEEECT-TC--CCCHHHHHHHHHH----HHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEEEcC-cc--ccchhhHHHHHHH----HHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 9999999873 32 33 3455555 44555555 7888899988 999999 9999853
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=426.99 Aligned_cols=331 Identities=20% Similarity=0.171 Sum_probs=261.3
Q ss_pred cCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHH---HhcCCCCCCEEEecCCcc-hhhhHHHHHHHhhhCcEEEE
Q 004825 352 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLG-WMMGPWLVYASLLNGASIAL 427 (728)
Q Consensus 352 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~~~~~L~~G~~lvl 427 (728)
..+++++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..|++ |..++..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 35678999999999999999999999999877654433 368899999999999985 66666778899999999988
Q ss_pred eCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCC--CcCeeEEEeecCCCCHHHHHHHHhccCCCCeEeccc
Q 004825 428 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYD--WSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 505 (728)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~--l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (728)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 765 47788999999999999999999999998753222222 47899999999999999999998877 588999999
Q ss_pred ccccccc-cccCCcccccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEeccccCCCccccCccccccccccCC
Q 004825 506 GTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 583 (728)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p 583 (728)
+||+++. +...... .....+.|.+++.++|+|+ +|+++|.|+. |||+|++. +++.| |
T Consensus 246 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~~-------------t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTSL-------------TKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeCC-------------CcccC---h
Confidence 9997432 2221111 1112455778999999995 5999999987 99999752 12223 2
Q ss_pred CCCCceeEEeCceEEEecC-ceE-----EEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEE
Q 004825 584 SRNGQILRRHGDVFERTSG-GYY-----RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 657 (728)
Q Consensus 584 ~~~g~~~y~TGDl~~~~~d-G~l-----~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~ 657 (728)
..||+|||+|++++| |.+ +++||.||+||++|++|+|.|||++|. .||+|.+++|++++++..+ +.++
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 129999999999999 987 899999999999999999999999995 9999999999988776555 7899
Q ss_pred EEEEecC--CCC-CCCCHHHHHHHHHHHHHhhCCCCc-ccceEEEC--CCCCCCCCCchhHHHH
Q 004825 658 IVVVFKD--SNY-TPPDLNQLRMSFNSAVQKKLNPLF-KVSHVVPL--PSLPRTATNKVMRRVL 715 (728)
Q Consensus 658 a~vv~~~--~~~-~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v--~~lP~t~~GKvdR~~L 715 (728)
++|++.+ ... ...+.++ ++++|+++|+.|+ +|..+.++ ++||+|+|||++|+..
T Consensus 379 a~v~~~~~~~~~~~~~~~~~----l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAA----LARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHH----HHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred EEEEECCcccccchhhHHHH----HHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 9998753 100 0112234 4445666666664 78777766 6999999999999753
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-48 Score=424.91 Aligned_cols=330 Identities=21% Similarity=0.171 Sum_probs=262.8
Q ss_pred cCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHH---HhcCCCCCCEEEecCCc-chhhhHHHHHHHhhhCcEEEE
Q 004825 352 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNL-GWMMGPWLVYASLLNGASIAL 427 (728)
Q Consensus 352 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~L~~G~~lvl 427 (728)
...++++++|+|||||||.||||+++|+++...+.+.. ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 45678999999999999999999999999877654433 35789999999999998 567667778899999999987
Q ss_pred eCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCC--CcCeeEEEeecCCCCHHHHHHHHhccCCCCeEeccc
Q 004825 428 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYD--WSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 505 (728)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~--l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (728)
.+. .++..+++.|+++++|++.++|+++..|++.......+ ++++|.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 764 47788999999999999999999999998753222222 47899999999999999999998777 589999999
Q ss_pred ccccccc-cccCCcccccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEeccccCCCccccCccccccccccCC
Q 004825 506 GTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 583 (728)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p 583 (728)
+||+++. +...... ....++.|.+++.++|+|+ +|+++|.|+. |||+|++. +++.| |
T Consensus 244 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~~-------------t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTSL-------------TKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEecC-------------CcCCc---h
Confidence 9998432 2222211 1112556778999999995 5999999987 99999752 12223 1
Q ss_pred CCCCceeEEeCceEEEec-CceE-----EEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEE
Q 004825 584 SRNGQILRRHGDVFERTS-GGYY-----RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 657 (728)
Q Consensus 584 ~~~g~~~y~TGDl~~~~~-dG~l-----~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~ 657 (728)
..||+|||+|++++ ||++ +++||.||+||++|++|+|.|||++|. .||+|.+++|++++++..+ +.++
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~ 376 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT 376 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence 12999999999999 6986 899999999999999999999999995 9999999999988776665 8899
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCc-ccceEEEC--CCCCCCCCCchhHHH
Q 004825 658 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF-KVSHVVPL--PSLPRTATNKVMRRV 714 (728)
Q Consensus 658 a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v--~~lP~t~~GKvdR~~ 714 (728)
++|++.+ +. ..+. .-.+.++++|+++|+.|+ +|..+.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~-~~-~~~~-~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCP-ET-APDT-AAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCT-TT-TTCH-HHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECC-Cc-cchh-hhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9999876 43 1111 112344556667777774 88888888 5999999 9999864
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-32 Score=289.55 Aligned_cols=238 Identities=14% Similarity=0.043 Sum_probs=180.6
Q ss_pred cCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHH---HhcCCCCCCEEEecCCc-chhhhHHHHHHHhhhCcEEEE
Q 004825 352 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNL-GWMMGPWLVYASLLNGASIAL 427 (728)
Q Consensus 352 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~L~~G~~lvl 427 (728)
..+++++++|+|||||||+||||+++|+++.+.+.+.. ..++++++|++++..|+ .|+.++...+.++..|+ +++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF 165 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence 34789999999999999999999999999998887553 45678999999999999 89899888788899999 444
Q ss_pred eCCCCCcc-----------------------hHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCC
Q 004825 428 YNGSPLGS-----------------------GFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 484 (728)
Q Consensus 428 ~~~~~~~~-----------------------~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~ 484 (728)
.. ..++. .+++.|+++++|++.++|+++..|++.......++++||.+++|||+++
T Consensus 166 ~~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 166 SI-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN 244 (369)
T ss_dssp CC-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred Cc-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence 43 23444 6777999999999999999999998763222245678999999999999
Q ss_pred HHHHHHHH-hccCCCCeEecccccccccccccCCcccccccccccCC------CCCceEEEEcC-CCCccCCCCCceeEE
Q 004825 485 VDEYLWLM-GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP------AMGCKLFILGN-DGCPIPQNVPGMGEL 556 (728)
Q Consensus 485 ~~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~v~i~d~-~g~~vp~g~~giGEl 556 (728)
+++.+++. +.+++++++|.||+||+++++..+. ..++|+| +++++++|+|+ +|+++|.|+. |||
T Consensus 245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GEl 316 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSLL------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNV 316 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EEE
T ss_pred HHHHHHHHHHhCCCcEEEcccCchhhhcceeccc------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eEE
Confidence 99999999 8887899999999999886543221 1158999 99999999998 8999999986 999
Q ss_pred EEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecC--c-------eEEEEcccCCeeecCce
Q 004825 557 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG--G-------YYRAHGRADDTMNLGGI 620 (728)
Q Consensus 557 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~d--G-------~l~~~GR~d~~iki~G~ 620 (728)
+|.+..- ..|.. .|+|||++++.+. | .+..++|.|+++||.|.
T Consensus 317 ~vt~l~~-------------~~~l~--------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 317 IVTHLSP-------------WAFYP--------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEET-------------TEEEE--------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEcCc-------------ccccc--------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9964321 12211 5999999998643 2 46778999999999885
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-15 Score=129.95 Aligned_cols=96 Identities=19% Similarity=0.316 Sum_probs=73.2
Q ss_pred cccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCH---HHHHHHHHHHHHh
Q 004825 609 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL---NQLRMSFNSAVQK 685 (728)
Q Consensus 609 GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~---~~l~~~l~~~l~~ 685 (728)
.|.||+||++|+||+|.|||++|. .||+|.+++|++++++..+ +.+.++++..+ +. ..+. +++.++++++++.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~-~~-~~~~~~~~~l~~~i~~~l~~ 76 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQ-LF-TDDYGRLQALTREITRQLKD 76 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECT-TC-CCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEee-cc-ccccchhhhhHHHHHHHHHH
Confidence 499999999999999999999996 9999999999999888777 88999998876 44 2332 4566677777766
Q ss_pred hCCCCcccceEEEC--CCCCCCCCCchhH
Q 004825 686 KLNPLFKVSHVVPL--PSLPRTATNKVMR 712 (728)
Q Consensus 686 ~Lp~~~~P~~i~~v--~~lP~t~~GKvdR 712 (728)
++. +|..+.++ ++||+| +||+.|
T Consensus 77 ~~g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 77 EIL---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHS---SCCEEEEECTTCSCCC----CCC
T ss_pred HhC---CccceEEEcCCeecCC-CCCcch
Confidence 653 34344444 589999 799987
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-07 Score=103.31 Aligned_cols=162 Identities=14% Similarity=0.020 Sum_probs=91.1
Q ss_pred CcCeeE--EEeecCCCCHHHHHHHHhccCCCCeE-ecccccccccccccCCcccccccccccC-CCCCc-eEEEE--cCC
Q 004825 470 WSSIRC--FGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFST-PAMGC-KLFIL--GND 542 (728)
Q Consensus 470 l~~lr~--i~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~-p~~~~-~v~i~--d~~ 542 (728)
+|++++ ++++|.. ..-...+...+++.+++ ..|+.||.-+.+-.. +.. .+...+. .+++. -...+ |+.
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~-p~~--~~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVT-PRL--SPEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEEECCC-TTS--CTTTCCEEECTTSCEEEEEEC---
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeeeeecC-CCC--CccccceeecCCcEEEEEEecccc
Confidence 567753 3344432 12223444444567877 999999964332211 111 1111111 12222 12233 222
Q ss_pred C---------CccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecC----ceEEEEc
Q 004825 543 G---------CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG----GYYRAHG 609 (728)
Q Consensus 543 g---------~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~d----G~l~~~G 609 (728)
+ ..|..|+. +||+|+... + + -.|++||+++...- ..+.|+|
T Consensus 376 ~~~~~~~v~l~eve~G~~--YelviTt~~--G---L-------------------~RYr~GD~v~v~g~~~~~p~~~~~g 429 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGEE--YEVVITNYA--G---L-------------------YRYRLGDVVKVIGFYNNTPQLKFIC 429 (581)
T ss_dssp ----CCCEEGGGCCTTCE--EEEEEESTT--S---C-------------------SSEEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCceeeHHHcCCCCe--EEEEEeecc--c---e-------------------eeEEcCCEEEEecccCCCcEEEEEe
Confidence 1 24567775 999985431 1 0 03999999998742 6799999
Q ss_pred ccCCeeecCceeecHHHHHHHHhcC-----CC--CeeeeEEEeecCCCCCceEEEEEEEecC
Q 004825 610 RADDTMNLGGIKVSSVEIERICNAV-----DS--NVLETAAIGVPPPDGGPEQLTIVVVFKD 664 (728)
Q Consensus 610 R~d~~iki~G~ri~~~eIE~~l~~~-----~p--~V~~~~Vv~~~~~~~g~~~l~a~vv~~~ 664 (728)
|.++++++.|.++...+||.+|.+. .. .|.|..+..-.....+ .-+.|+.+..
T Consensus 430 R~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~--hyv~~wE~~~ 489 (581)
T 4epl_A 430 RRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG--HYAIFWEISG 489 (581)
T ss_dssp ETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC--EEEEEEEESS
T ss_pred ecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC--cEEEEEeecC
Confidence 9999999999999999999998632 12 3667666542222222 3444556643
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-07 Score=103.33 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=45.5
Q ss_pred eEEeCceEEEec----CceEEEEcccCCeeecCceeecHHHHHHHHhcCC-----C--CeeeeEEEe
Q 004825 590 LRRHGDVFERTS----GGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD-----S--NVLETAAIG 645 (728)
Q Consensus 590 ~y~TGDl~~~~~----dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~-----p--~V~~~~Vv~ 645 (728)
.|++||+++... ...|.|+||.+++++++|.+|...+||.+|.+.. . .|.|..+..
T Consensus 411 RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~ 477 (609)
T 4b2g_A 411 RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFA 477 (609)
T ss_dssp SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEE
T ss_pred heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEec
Confidence 399999999974 4789999999999999999999999999996322 2 256665543
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=8.3e-08 Score=105.69 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=81.5
Q ss_pred CcC---eeEEEeecCCCCHHHHHHHHhccCCCCeE-ecccccccccccccCCcccccccccccC-CCCC-ceEEEEcCC-
Q 004825 470 WSS---IRCFGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFST-PAMG-CKLFILGND- 542 (728)
Q Consensus 470 l~~---lr~i~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~-p~~~-~~v~i~d~~- 542 (728)
+|+ +.+++.||-. .-...++..+++.+++ ..|+.||....+-...... +...+. .+++ .-...++.+
T Consensus 296 WPnl~~l~~~~~G~~~---~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~---~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGSMG---QYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCK---PEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGGGG---GGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSC---GGGCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCChH---HHHHHHHHHcCCCccccCccccccceeeeccCCCCC---cccCceeecCCcEEEEEEeccc
Confidence 466 6666677732 2223444445667777 9999999643221111111 111121 1222 223344321
Q ss_pred ---CC-----ccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEec----CceEEEEcc
Q 004825 543 ---GC-----PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTS----GGYYRAHGR 610 (728)
Q Consensus 543 ---g~-----~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~----dG~l~~~GR 610 (728)
.+ .|..|+. +||+|+.. ++. -.|++||+++... ...|.|+||
T Consensus 370 ~~~~~~v~l~eVe~G~~--YelViTt~--~GL----------------------~RYr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCT--YEPVVTNF--AGL----------------------YRMRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTCE--EEEEEECS--SSC----------------------CSEECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCce--EEEEEeec--cce----------------------eeEEcCCEEEEcccCCCCcEEEEEEe
Confidence 12 2446665 89988533 110 0399999999986 478999999
Q ss_pred cCCeeecCceeecHHHHHHHHhcCC
Q 004825 611 ADDTMNLGGIKVSSVEIERICNAVD 635 (728)
Q Consensus 611 ~d~~iki~G~ri~~~eIE~~l~~~~ 635 (728)
.+++++++|++|...+||++|.+..
T Consensus 424 ~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 424 ENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp TTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred cCCEEEeeeeECCHHHHHHHHHHHH
Confidence 9999999999999999999996433
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.8e-08 Score=110.98 Aligned_cols=118 Identities=13% Similarity=0.014 Sum_probs=96.3
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC--CCCcc-------
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD--PPAWI------- 85 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~--~~~~~------- 85 (728)
.+++++..+++.+|.++|+++++...+ +||++||++|++.+++.|+.+++|+ |+++|++.+. .....
T Consensus 374 ~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~i~~~l~~~r~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~~~ 451 (520)
T 2jgp_A 374 TLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEELVEKLAIARDLSRNPL--FDTVFTFQNSTEEVMTLPECTLAP 451 (520)
T ss_dssp EEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHHHHHHTCCCCCTTSCSS--CSEEEEEECCCCSCCCCSSEEEEE
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhcCCCCCCCCCc--EEEEEEEecCCCccccCCCceeEE
Confidence 367888888889999999999998877 9999999999999999999888998 8888887211 11111
Q ss_pred -CChhh--hhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhc
Q 004825 86 -PDPEA--AKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEM 141 (728)
Q Consensus 86 -~~~~~--~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~ 141 (728)
+.... ..++||.+.+...++++...+ |++ ++|.+++++++.++|..+|+++
T Consensus 452 ~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l 506 (520)
T 2jgp_A 452 FMTDETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASI 506 (520)
T ss_dssp CSSCSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHH
Confidence 11112 567888887777788888888 999 9999999999999999999987
|
| >4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} | Back alignment and structure |
|---|
Probab=97.63 E-value=1.2e-06 Score=96.84 Aligned_cols=131 Identities=6% Similarity=-0.077 Sum_probs=89.9
Q ss_pred HHHcCCChHH--HHHHHHHHHHHHHhcCC--CChhhHHHHHHh---hcCCCCCCccchhheeeecccCCCC---CC----
Q 004825 17 IEALGIPSKL--AEQLHEKLAEIVNTHGA--ATPATWQNITTH---ILSPDLPFSFHQLLYYGCYKDFGPD---PP---- 82 (728)
Q Consensus 17 ~~~~~~~~~~--~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~---~l~~~r~~~~~~~~f~~~~~~~~~~---~~---- 82 (728)
.+++++..++ ..+|.++|+++++...+ +| ++||+.|++ +|+..|+.+.+|+ |+++|++.+. ..
T Consensus 299 ~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~i~~~~~~l~~~~~~~~~~l--f~~~~~~~~~~~~~~~~~~ 375 (493)
T 4hvm_A 299 RVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHDVVDLAVDLGVVTPPRVAAR--WDVAVHLCRNAPSSSLTRG 375 (493)
T ss_dssp EEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHTTSCBTTBTTGG--GCEEECC------------
T ss_pred eeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHhhhCcccCCCCCcc--eeEEEEEEecCCccccccc
Confidence 4567777788 88999999999998877 99 999999999 9999999999999 9999988211 00
Q ss_pred ---CccCCh----------------------hhhhhcc---HHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHH
Q 004825 83 ---AWIPDP----------------------EAAKVTN---VGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVY 133 (728)
Q Consensus 83 ---~~~~~~----------------------~~~~~~~---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~ 133 (728)
+..+.. ..+++++ +.+.+...++++...+ |+. ++| +++++++.++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~~ 449 (493)
T 4hvm_A 376 ERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLDG 449 (493)
T ss_dssp --------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHHH
T ss_pred cccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHHH
Confidence 000000 0113567 7777777788888889 999 999 9999999999
Q ss_pred HHHHHHhcCcceecCCceeecCCCCCC
Q 004825 134 WKTVLNEMSTSFSVPPQCILRENPNGE 160 (728)
Q Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (728)
|..+|+++ .+.|+..+...++..
T Consensus 450 ~~~~L~~~----~~~p~~~l~~l~ll~ 472 (493)
T 4hvm_A 450 LDAAMAQA----VADPSAPLPHSTVDT 472 (493)
T ss_dssp HHHHHHHH----HHCTTSBCCC-----
T ss_pred HHHHHHHH----HhCCCCccccCCCCC
Confidence 99999997 355555555555433
|
| >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=97.11 E-value=6e-06 Score=89.69 Aligned_cols=116 Identities=6% Similarity=-0.073 Sum_probs=84.7
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCCCCCccCCh------
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPDPPAWIPDP------ 88 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~~~~~~~~~------ 88 (728)
.+++++..++..+|.++++++++...+ +||++||++|++.++..++ .+|+ |+++|++.+......++.
T Consensus 278 ~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~i~~~l~~~~~--~~~l--f~~~~~~~~~~~~~~~~~~~~~~~ 353 (436)
T 1l5a_A 278 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAE--QSYF--MSPFINILPFESPHFADCQTELKV 353 (436)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCTT--CCBC--CCSEEEEECCCCCCCTTCEEEEEE
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHHhccccc--CCCc--cceEEEeeccCccccCCCeeEEEe
Confidence 467888888899999999999998877 9999999999999987663 3455 555555511100011110
Q ss_pred --hhhhhccHHHHHH-HhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcC
Q 004825 89 --EAAKVTNVGKLLQ-TRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMS 142 (728)
Q Consensus 89 --~~~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~ 142 (728)
....+ +|.+.+. ..++++...+ |+. ++|.+++++++.++|..+|+++.
T Consensus 354 ~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~ 405 (436)
T 1l5a_A 354 LASGSAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLL 405 (436)
T ss_dssp EEECCCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHH
Confidence 11222 6666655 3567788888 999 99999999999999999999974
|
| >2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.00034 Score=76.40 Aligned_cols=119 Identities=12% Similarity=0.058 Sum_probs=78.8
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHhhcCCC-----CCCccch-hheeeec-ccCC--CCCC--Cc
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA-ATPATWQNITTHILSPD-----LPFSFHQ-LLYYGCY-KDFG--PDPP--AW 84 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~-~hq~~pfe~lv~~l~~~-----r~~~~~~-~~f~~~~-~~~~--~~~~--~~ 84 (728)
.+++++..+.+.+|.++|+++++.... .||++||+ +++.+... +..+..| ++|.... +... .... ..
T Consensus 309 ~lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~ 387 (466)
T 2xhg_A 309 QYPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYD-ILKHVTLPENRGSLSFRVQPEVTFNYLGQFDADMRTELFTRSP 387 (466)
T ss_dssp EEEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHH-HHHHTSCGGGSTTCCCCCCCSEEEEEEEECCTTCSSSSCEECT
T ss_pred eccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccc-eeeecccccccccccccCCCeEEEeecCcccccccCCceeccc
Confidence 357777777888999999999987655 89999999 56777653 3334444 3332221 1100 0000 00
Q ss_pred cCC-------------hhhhhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhc
Q 004825 85 IPD-------------PEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEM 141 (728)
Q Consensus 85 ~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~ 141 (728)
.+. .....+++|.+.+...++++...+ |+. ++|.+.+|+++.++|..+|+++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l 453 (466)
T 2xhg_A 388 YSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAI 453 (466)
T ss_dssp TCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHH
Confidence 010 011126677766555677788888 999 9999999999999999999986
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=1.7 Score=46.27 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=77.5
Q ss_pred CCCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCcEEEe
Q 004825 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVS 264 (728)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~~~vva~lA~lkaG~~~vp 264 (728)
..++.+|.+.-..| .+|. .-.+|.+.+...+..+++.+...|+.++|++..+++-+ ...+..+++.+..|+..++
T Consensus 87 ~~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSG-TTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCC-TTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 35677776554443 2333 34689999998888888888889999999999999863 3445567888999999998
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecc
Q 004825 265 IADSFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 265 l~p~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
+++ ...+++...+++.++.+++....
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHH
Confidence 765 47888999999999999988764
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=89.24 E-value=2.7 Score=44.82 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=76.9
Q ss_pred CCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCcEEEec
Q 004825 190 SLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVSI 265 (728)
Q Consensus 190 ~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~~~vva~lA~lkaG~~~vpl 265 (728)
.++.+|.+.-..| .+|. .-.+|.+.+...+..+++.+...|+.++|++..+++-+ ...+..+++.+..|+..+++
T Consensus 90 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 90 PREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp CGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred ChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4567775544432 2333 34689999998888888888889999999999999864 34455678888999999988
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEecc
Q 004825 266 ADSFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 266 ~p~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
++. ..+++...+++.++.+++....
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHH
Confidence 664 7888889999999999987764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=88.77 E-value=2.3 Score=45.18 Aligned_cols=98 Identities=17% Similarity=0.051 Sum_probs=77.3
Q ss_pred CCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--CHHHHHHHHHHHHcCcEEEecCC
Q 004825 192 DDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM--NVNSVVIYLAIVLAGYIVVSIAD 267 (728)
Q Consensus 192 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~--s~~~vva~lA~lkaG~~~vpl~p 267 (728)
+.+|.+.-..| .+|. .-.+|.+.+...+..+++.+...|+.++|++..+++- ....+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSG-TTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSG-TTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSC-SSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCC-cCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 77887665543 2333 3468999999999999999988999999999999875 34455677888999999998765
Q ss_pred CCCHHHHHHHHHhcCceEEEEecc
Q 004825 268 SFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
. .++++...+++.++.+++....
T Consensus 165 ~-~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 165 G-NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp C-CHHHHHHHHHHHTCCEEECCHH
T ss_pred C-CHHHHHHHHHHHCCCEEEECHH
Confidence 4 6788889999999999887764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 728 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 4e-90 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 3e-81 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 2e-55 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 3e-50 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 6e-46 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 4e-45 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-40 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 293 bits (751), Expect = 4e-90
Identities = 160/612 (26%), Positives = 259/612 (42%), Gaps = 35/612 (5%)
Query: 124 EFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCL 183
+ S+++P+ +W + P Q + N N +W +N A NCL
Sbjct: 25 KQSINDPDTFWGEQGKI--LDWITPYQKVK----NTSFAPGNVSIKWYEDGTLNLAANCL 78
Query: 184 SVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMP 243
+ + + D I W EGD K ++ +EL +V A L LG+ KG +AI MP
Sbjct: 79 DRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMP 136
Query: 244 MNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYR 303
M + V LA G + I F+ ++ + S ++ + T D +R +SIPL +
Sbjct: 137 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKK 196
Query: 304 VIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTN--- 360
+D V + +K DI W + + + + + QP
Sbjct: 197 NVDDALKNPNVTSVE-HVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPL 255
Query: 361 -ILFSSGTTGEPKAIPWTNATPFKAAADAWCH-MDIRKADIVAWPTNLGWMMG-PWLVYA 417
IL++SG+TG+PK + T AA + + D DI ++GW+ G +L+Y
Sbjct: 256 FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYG 315
Query: 418 SLLNGASIALYNGSPL---GSGFAKFVQDAKVTMLGVVPSIVRTWKSTN--CIDGYDWSS 472
L GA+ ++ G P + + V +V +L P+ +R + I+G D SS
Sbjct: 316 PLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSS 375
Query: 473 IRCFGSTGEASNVDEYLWLMGR--ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFS-- 528
+R GS GE N + + W + PV++ TE GGF+ L A L A S
Sbjct: 376 LRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET-GGFMITPLPGAIELKAGSAT 434
Query: 529 TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQ 588
P G + ++ N+G P G L ++ G + TL F +
Sbjct: 435 RPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFG---DHERFEQTYFSTFK 489
Query: 589 ILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 648
+ GD R GYY GR DD +N+ G ++ + EIE A + E A +G+P
Sbjct: 490 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPK-IAEAAVVGIPH 548
Query: 649 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATN 708
G V + +P ++R + V+K++ PL + SLP+T +
Sbjct: 549 AIKGQAIYAYVTLNHGEEPSPELYAEVR----NWVRKEIGPLATPDVLHWTDSLPKTRSG 604
Query: 709 KVMRRVLRKQLA 720
K+MRR+LRK A
Sbjct: 605 KIMRRILRKIAA 616
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 269 bits (689), Expect = 3e-81
Identities = 142/622 (22%), Positives = 249/622 (40%), Gaps = 31/622 (4%)
Query: 119 FSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNP 178
+ + S+ +P ++ + + + + + G W +N
Sbjct: 3 YQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSF--QNNAWFLNGQLNA 60
Query: 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYAL-NALGLDKGSA 237
NC+ ++ ++ + I + EGD S+T KEL EV VA L ++G+ KG
Sbjct: 61 CYNCVDRHALKTPNKKAIIF--EGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDT 118
Query: 238 IAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDK 297
+A+ MPM +++ LAI G I + F+S + R+ +K + T D RG K
Sbjct: 119 VAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGK 178
Query: 298 SIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEA 357
I R++D + L+ + K+ + PV++
Sbjct: 179 VIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDS 238
Query: 358 FTN--ILFSSGTTGEPKAIP-WTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-W 413
+L++SG+TG PK + T A D + D+ ++GW+ G +
Sbjct: 239 EDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTY 298
Query: 414 LVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVTMLGVVPSIVRTWKSTN--CIDGY 468
+VY LL G + ++ G+P ++++ + + KVT V P+ +R K I+ +
Sbjct: 299 VVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENH 358
Query: 469 DWSSIRCFGSTGEASNVDEYLWLMGR--ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAA 526
S+RC GS GE + + W + P+++ TE G +T +
Sbjct: 359 SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKP 418
Query: 527 FS--TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY--DVYFSGM 582
S P G +L + G LA+ + T+ + D Y +
Sbjct: 419 GSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 478
Query: 583 PSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETA 642
P GD + GY GR DD +N+ G ++S+ EIE V E A
Sbjct: 479 PG-----YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPI-VAECA 532
Query: 643 AIGVPPPDGGPEQLTIVVVFKD----SNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVP 698
+G G + + VV K+ S T +L ++ V+K + P ++
Sbjct: 533 VVGFNDDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIIL 591
Query: 699 LPSLPRTATNKVMRRVLRKQLA 720
+ LP+T + K+MRR+LRK LA
Sbjct: 592 VDDLPKTRSGKIMRRILRKILA 613
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 196 bits (499), Expect = 2e-55
Identities = 103/568 (18%), Positives = 180/568 (31%), Gaps = 55/568 (9%)
Query: 171 LPGAFVNPAKN---CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYAL 227
P ++ N L + V+ G+ V T E+ + L
Sbjct: 2 FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGE----VHRTTYAEVYQRARRLMGGL 57
Query: 228 NALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIF 287
ALG+ G +A + + Y A+ G ++ + + EI+ L ++ K +
Sbjct: 58 RALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLL 117
Query: 288 TQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENE 347
+ + + + + + L + E
Sbjct: 118 FDP-----NLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALG------------EE 160
Query: 348 FAAVEQPVEAFTNILFSSGTTGEPKA--IPWTNATPFKAAADAWCHMDIRKADIVAWPTN 405
V P A + +++GTTG PK AA + + D+V
Sbjct: 161 ADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVP 220
Query: 406 LGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI 465
+ + L YA+ L GA L + + VT VP++
Sbjct: 221 MFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLES 280
Query: 466 DGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL------ 519
G+ ++R G A+ + V + G TE + +
Sbjct: 281 TGHRLKTLRRLVVGGSAAPRSLIARF--ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL 338
Query: 520 ----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLNANH 574
+ A P +L + +G P+P++ +GE+ L P I G N
Sbjct: 339 SEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITG--GYYGNEEA 396
Query: 575 YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAV 634
+ R GD+ GY R D + GG +SSV++E
Sbjct: 397 TRSALTPDG------FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGH 450
Query: 635 DSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVS 694
V E A + +P P E+ VVV + TP +LN+ ++
Sbjct: 451 PK-VKEAAVVAIPHPKWQ-ERPLAVVVPRGEKPTPEELNE------HLLKAGFAKWQLPD 502
Query: 695 HVVPLPSLPRTATNKVMRRVLRKQLAQL 722
V +PRT+ K ++R LR+Q
Sbjct: 503 AYVFAEEIPRTSAGKFLKRALREQYKNY 530
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 182 bits (462), Expect = 3e-50
Identities = 96/522 (18%), Positives = 173/522 (33%), Gaps = 38/522 (7%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
++T E +A A+ GL+ I + ++ + L + G V D
Sbjct: 46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 105
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
+ E+ + IS+ +F S + I +I S
Sbjct: 106 YNERELLNSMNISQPTVVFV---------SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ 156
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPV---EAFTNILFSSGTTGEPKAIPWTN---ATPF 382
G S F+ NE+ V + + I+ SSG+TG PK + + F
Sbjct: 157 GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRF 216
Query: 383 KAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQ 442
A D I + G + L+ G + L F + +Q
Sbjct: 217 SHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEEL-FLRSLQ 275
Query: 443 DAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIE 502
D K+ +VP++ + + ID YD S++ S G + + + R + +
Sbjct: 276 DYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQ 335
Query: 503 YCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELAL-SP 560
G TE I + A + ++ D G + N GEL + P
Sbjct: 336 GYGLTET-TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGP 392
Query: 561 LIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGI 620
+I S +N + GD+ ++ R + G
Sbjct: 393 MIM---SGYVNNPEATNAL-----IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGY 444
Query: 621 KVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFN 680
+V+ E+E I + + + G+P D G E VVV + ++
Sbjct: 445 QVAPAELESILLQHPN-IFDAGVAGLPDDDAG-ELPAAVVVLEHG--KTMTEKEIV---- 496
Query: 681 SAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQ 721
V ++ K+ VV + +P+ T K+ R +R+ L +
Sbjct: 497 DYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 538
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 169 bits (428), Expect = 6e-46
Identities = 88/512 (17%), Positives = 175/512 (34%), Gaps = 54/512 (10%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ +T EL + +A G+ K + + I M +++ + LA++ AG V I
Sbjct: 47 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIE 106
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
+ I L S+A+ + TQ ++ +I +
Sbjct: 107 YPKERIQYILDDSQARMLLTQKHLVHLIHNIQF--------------------------N 140
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA 388
G + + K++E V ++++SGTTG PK +
Sbjct: 141 GQVEIFEE--DTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFF 198
Query: 389 WCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSG--FAKFVQDAKV 446
+++ + D + ++ + W ++ +LL GAS+ + + F +++ ++
Sbjct: 199 ENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEI 258
Query: 447 TMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG 506
T++ + +D SI+ + G A++ + Y
Sbjct: 259 TVITLP------PTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTET 312
Query: 507 TEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGA 565
T ++ S+ P +++I+ + GEL + +
Sbjct: 313 TICATTWVATKETIGHSVPIG-APIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLA-- 367
Query: 566 SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSV 625
F P G+ L + GD S G GR D+ + + G +V
Sbjct: 368 RGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELE 427
Query: 626 EIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK 685
E+E I + ETA L V + L QLR +
Sbjct: 428 EVESILLKHMY-ISETAVSVHKDHQEQ-PYLCAYFVSEKH----IPLEQLR----QFSSE 477
Query: 686 KLNPLFKV-SHVVPLPSLPRTATNKVMRRVLR 716
+L P + + S+ + L +P T+ K+ R+ L
Sbjct: 478 EL-PTYMIPSYFIQLDKMPLTSNGKIDRKQLP 508
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 167 bits (424), Expect = 4e-45
Identities = 87/516 (16%), Positives = 171/516 (33%), Gaps = 36/516 (6%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ +EL +A LG+ + + + +P + A+ G + V S
Sbjct: 49 THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPS 108
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRD 328
S EI+ ++A A D D +V L +I A + + L D
Sbjct: 109 HRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLED 168
Query: 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA 388
L E + S G+TG K IP T+ + +
Sbjct: 169 --------------LHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRS 214
Query: 389 WCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN-GSPLGSGFAKFVQDAKVT 447
+ + + + + A + SP ++ KVT
Sbjct: 215 VEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVT 274
Query: 448 MLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGT 507
+ +VP + W D SS++ G + + + + + G
Sbjct: 275 ITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVK-AVFGCTLQQVFGMA 333
Query: 508 EIGGGFITGSLLQAQSLAAFSTP-AMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGAS 566
E + + + P + + + + + G L+
Sbjct: 334 EGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGH-------LLTRGP 386
Query: 567 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVE 626
T+ + + + + +G R GD+ T GY GRA D +N GG KV++ E
Sbjct: 387 YTIRGYYKAEEHNAASFTEDGF--YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE 444
Query: 627 IERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK 686
+E A V + A + +P G E+ + ++ +D +L ++++
Sbjct: 445 VENHLLAHP-AVHDAAMVSMPDQFLG-ERSCVFIIPRDEAPKAAELKA-------FLRER 495
Query: 687 LNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQ 721
+K+ V + S P+T KV ++ LR+ +++
Sbjct: 496 GLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 154 bits (389), Expect = 1e-40
Identities = 96/534 (17%), Positives = 156/534 (29%), Gaps = 52/534 (9%)
Query: 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVI 251
D + G +T ELRA V VA L+A GL +A+ P + + V+
Sbjct: 17 DHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIA 70
Query: 252 YLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPL 311
LA+ G + + S E++ ++ + A VI +
Sbjct: 71 ILALHRLGAVPALLNPRLKSAELAELIKRGEMTAA-----------------VIAVGRQV 113
Query: 312 AIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEP 371
A I GS + + + ++ I ++SGTTG P
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGEPYSY-----GPPIEDPQREPAQPAFIFYTSGTTGLP 168
Query: 372 KAIPWTNATPFKAAA----DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIAL 427
KA + P LV A L+G + +
Sbjct: 169 KAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228
Query: 428 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDE 487
P+ + + + + S+R G + +
Sbjct: 229 EEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT--MPD 286
Query: 488 YLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIP 547
+ GT + + + A + + I G +
Sbjct: 287 AVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVA 346
Query: 548 QNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRA 607
G +A S F Y + R DV T G R
Sbjct: 347 NGEEGELIVAASDSAFV---------GYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRI 397
Query: 608 HGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNY 667
GR DD + GG + EIER+ V E IG+ G + +T VV +
Sbjct: 398 LGRVDDMIISGGENIHPSEIERVLGTAPG-VTEVVVIGLADQRWG-QSVTACVVPRLG-- 453
Query: 668 TPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLA 720
+ L + + FK L LP+ A NKV+RR L +Q++
Sbjct: 454 ETLSADALD----TFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 728 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1l5aa2 | 250 | VibH {Vibrio cholerae [TaxId: 666]} | 97.28 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 83.78 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=3.6e-89 Score=784.23 Aligned_cols=582 Identities=27% Similarity=0.416 Sum_probs=482.0
Q ss_pred CCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCCCCe
Q 004825 115 PISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDI 194 (728)
Q Consensus 115 ~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~pd~~ 194 (728)
++++|+.++++|+++++.||..+++. +.|.++++.+++.... ......+||+++..|+++|+|+++++++||++
T Consensus 16 ~~~~y~~l~~~s~~~~~~fW~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~wf~~~~~N~~~n~ldrh~~~~~d~~ 89 (643)
T d1pg4a_ 16 NPEQYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFA----PGNVSIKWYEDGTLNLAANCLDRHLQENGDRT 89 (643)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECC----TTCCEEEESTTCEECHHHHHTGGGHHHHTTSE
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHhh--eeEECCCcccccCccC----CCCCCCeeCCCChhhHHHHHHHHHHHhCCCCE
Confidence 45678999999999999999999987 5788999888865431 11335689999999999999999999999999
Q ss_pred EEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHH
Q 004825 195 VIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEI 274 (728)
Q Consensus 195 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l 274 (728)
|+++.+. +.+..+++||+||.++++++|++|+++||++||+|+|+++|++++++++|||+++|++++|++|.++.+++
T Consensus 90 Ali~~~~--~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l 167 (643)
T d1pg4a_ 90 AIIWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAV 167 (643)
T ss_dssp EEEEECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHH
T ss_pred EEEEEec--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHH
Confidence 9998764 23456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEecceecCCcccchH-hhHhhc-------CCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccC
Q 004825 275 SARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQ-------APLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKEN 346 (728)
Q Consensus 275 ~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (728)
.+++++++++++|+++...+..+..... ...... ...++++......... .......+.+..... ..
T Consensus 168 ~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~ 242 (643)
T d1pg4a_ 168 AGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKA----SP 242 (643)
T ss_dssp HHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTS----CS
T ss_pred HHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccccc-ccccchhhhhhhccc----Cc
Confidence 9999999999999999887776666544 222111 1234444433322211 111223333333322 22
Q ss_pred ccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHH-HHHHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcE
Q 004825 347 EFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKA-AADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGAS 424 (728)
Q Consensus 347 ~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~ 424 (728)
...+....+++++||+|||||||.||||+++|++++.. .......++++++|++++.+|++|++++ +.++++|++|++
T Consensus 243 ~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t 322 (643)
T d1pg4a_ 243 EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAT 322 (643)
T ss_dssp CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCE
T ss_pred ccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCE
Confidence 33445667899999999999999999999999996654 4444566899999999999999999997 468899999999
Q ss_pred EEEeCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHhccC--C
Q 004825 425 IALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--Y 497 (728)
Q Consensus 425 lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~--~ 497 (728)
++++++. +++..++++|++++||++.++|++++.|++... ....++++||.+++|||++++++++++.+.++ +
T Consensus 323 ~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~ 402 (643)
T d1pg4a_ 323 TLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEK 402 (643)
T ss_dssp EEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTC
T ss_pred EEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCC
Confidence 9998754 367889999999999999999999999987643 34567899999999999999999999988875 5
Q ss_pred CCeEecccccccccccccCCc-ccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCcccc-Ccccc
Q 004825 498 KPVIEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL-NANHY 575 (728)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~-~~~~~ 575 (728)
++++|.||+||+++.++...+ ..+...+++|+|++|++++|+|++|++++.|+. |||+|.+.+.+...+|+ +++.+
T Consensus 403 ~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~--Gel~v~~~~p~~~~~~~~~~~~~ 480 (643)
T d1pg4a_ 403 CPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERF 480 (643)
T ss_dssp SCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHH
T ss_pred ceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCce--EEEEEecCCCcccccccCChhhc
Confidence 779999999999876655433 234456899999999999999999999999986 99999876655544444 44444
Q ss_pred c-cccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004825 576 D-VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 654 (728)
Q Consensus 576 ~-~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~ 654 (728)
. .+|... .+||+|||+|++++||+|+++||+||+||++|+||+|.|||++|. .||+|.||+|++++++..| +
T Consensus 481 ~~~~~~~~-----~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~-~~p~V~eaaVvg~~d~~~g-e 553 (643)
T d1pg4a_ 481 EQTYFSTF-----KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-Q 553 (643)
T ss_dssp HHHHHSSS-----TTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-E
T ss_pred hhhhcccC-----CCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEECCCCC-e
Confidence 3 344332 239999999999999999999999999999999999999999996 8999999999999998887 8
Q ss_pred EEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 655 QLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
.++|||++++ +. ....++.+.|+++++++|++||+|+.|+++++||+|+||||+|++|++++..
T Consensus 554 ~~~a~Vv~~~-~~--~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 617 (643)
T d1pg4a_ 554 AIYAYVTLNH-GE--EPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 617 (643)
T ss_dssp EEEEEEEECT-TC--CCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred EEEEEEEECC-CC--CCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcC
Confidence 9999999987 65 3346677788999999999999999999999999999999999999999875
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.4e-85 Score=752.50 Aligned_cols=590 Identities=24% Similarity=0.362 Sum_probs=469.7
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCCCCeEE
Q 004825 117 SSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVI 196 (728)
Q Consensus 117 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~pd~~Al 196 (728)
.+|+.++++|+++++.||.++++.+ +.|.+++++++........ ...+..+||+++..|++++||++|++++||++|+
T Consensus 1 ~~y~~l~~~Si~~~~~Fw~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~wf~~~~lN~~~n~ldr~a~~~pd~~Al 78 (640)
T d1ry2a_ 1 QDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGR-PSFQNNAWFLNGQLNACYNCVDRHALKTPNKKAI 78 (640)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCS-BCSTTCCBSTTCEECHHHHHTHHHHTTCTTSEEE
T ss_pred CCHHHHHHHHHhCHHHHHHHHHHhh-eeEecCCeEeeccCCccCC-CCCCCCcCCCCCchhHHHHHHHHHHhhCCCCEEE
Confidence 3789999999999999999999886 7899999988765431111 1234568999999999999999999999999999
Q ss_pred EEeccCCCCCCceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHH
Q 004825 197 RWCDEGDGGLPVKSMTLKELRAEVWLVAYALN-ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEIS 275 (728)
Q Consensus 197 ~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~ 275 (728)
++.+. +.+..+++||+||.++++++|++|+ ++||++||+|+|+++|++++++++|||+++|++++|++|.++.+++.
T Consensus 79 i~~~~--~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~ 156 (640)
T d1ry2a_ 79 IFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLR 156 (640)
T ss_dssp EEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHH
T ss_pred EEEec--CCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHH
Confidence 98753 2455679999999999999999997 67999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEEEecceecCCcccchHhhHhhcC------CcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccc
Q 004825 276 ARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA------PLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 349 (728)
Q Consensus 276 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (728)
++++++++++++++.........+.....++... .....+.................+...... ......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 232 (640)
T d1ry2a_ 157 DRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKK----YKTYYP 232 (640)
T ss_dssp HHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTT----SCSCCC
T ss_pred HHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccccccccccc----cccccc
Confidence 9999999999999998877777666553332211 122222222111111111112222222211 122333
Q ss_pred cccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHH-HHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEEE
Q 004825 350 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA-WCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 427 (728)
Q Consensus 350 ~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~-~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl 427 (728)
..+..++++++|+|||||||.||||+++|++++...... ...++++++|++++.+|++|+++. +.++++|+.|+++++
T Consensus 233 ~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 312 (640)
T d1ry2a_ 233 CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLV 312 (640)
T ss_dssp CCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEE
T ss_pred cCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEE
Confidence 455667999999999999999999999999976654444 456789999999999999999997 578899999999999
Q ss_pred eCCCC---CcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHhccCC--CCe
Q 004825 428 YNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY--KPV 500 (728)
Q Consensus 428 ~~~~~---~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~--~~l 500 (728)
+++.+ ++..+++.|++++||++.++|++++.|.+... ....++++||.+++|||++++++++++.+.++. .++
T Consensus 313 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i 392 (640)
T d1ry2a_ 313 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPI 392 (640)
T ss_dssp ECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCE
T ss_pred ecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceE
Confidence 87543 67789999999999999999999999987643 345678999999999999999999999988863 569
Q ss_pred EecccccccccccccCCc--ccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCc-cccCcccccc
Q 004825 501 IEYCGGTEIGGGFITGSL--LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASS-TLLNANHYDV 577 (728)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~-~~~~~~~~~~ 577 (728)
++.||.||++........ ..+...+++|+|++|++++|+|+++.....+..+.|||++.+...+... |+++++.+.+
T Consensus 393 ~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~ 472 (640)
T d1ry2a_ 393 VDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLD 472 (640)
T ss_dssp EECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHH
T ss_pred EeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHh
Confidence 999999999875544332 2345668999999999999999876544322223499999654333332 4556666665
Q ss_pred ccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEE
Q 004825 578 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 657 (728)
Q Consensus 578 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~ 657 (728)
.|..+ +.+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++
T Consensus 473 ~~~~~----~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~d~~~g-e~~~ 546 (640)
T d1ry2a_ 473 TYLNP----YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG-QAVA 546 (640)
T ss_dssp HHTSS----STTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-CCCE
T ss_pred hhccC----CCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-eEEE
Confidence 55432 2239999999999999999999999999999999999999999995 9999999999999998888 8999
Q ss_pred EEEEecCCCCCC-----CCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 658 IVVVFKDSNYTP-----PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 658 a~vv~~~~~~~~-----~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
|||++++ +... ....+++++|+++++++|++||+|+.|+++++||+|+||||+|++|+++++.
T Consensus 547 a~Vv~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 614 (640)
T d1ry2a_ 547 AFVVLKN-KSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 614 (640)
T ss_dssp EEEEEC-------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred EEEEEcC-CCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhC
Confidence 9999987 4311 1124577888999999999999999999999999999999999999998764
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.6e-73 Score=639.25 Aligned_cols=512 Identities=19% Similarity=0.180 Sum_probs=382.3
Q ss_pred CCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Q 004825 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSV 249 (728)
Q Consensus 170 w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~v 249 (728)
|..+...| ..++|+++++++||++|+++... +.++++||+||+++++++|++|.+.|+++||+|+|+++|+++++
T Consensus 5 ~~~~~~~~-l~~~l~~~a~~~pd~~av~~~~~----g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~ 79 (534)
T d1v25a_ 5 TMMDEELN-LWDFLERAAALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL 79 (534)
T ss_dssp CBCCCCCC-THHHHHHHHHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred ccCCCCCC-HHHHHHHHHHHcCCCeEEEEecC----CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHH
Confidence 44444434 45689999999999999998765 34568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC-cEEEEcCCCCCcccccC
Q 004825 250 VIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP-LAIVIPAKGSSFSMKLR 327 (728)
Q Consensus 250 va~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~ 327 (728)
+++|||+++|++++|++|.++.+++.++|+++++++++++..... .. .+...... ...++.......
T Consensus 80 ~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----- 148 (534)
T d1v25a_ 80 EAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLP------LVEAIRGELKTVQHFVVMDEKAPE----- 148 (534)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH------HHHHHGGGCSSCCEEEESSSCCCT-----
T ss_pred HHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhh------hHHHHhhcccccceeEEeeccccc-----
Confidence 999999999999999999999999999999999999999875431 11 22222222 222222111100
Q ss_pred CCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHH--HhcCCCCCCEEEecCC
Q 004825 328 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW--CHMDIRKADIVAWPTN 405 (728)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~d~~l~~~~ 405 (728)
..... +.. ...........++++++|+|||||||.||||+++|++++..+.... ..+.....|++++.+|
T Consensus 149 -~~~~~-~~~------~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p 220 (534)
T d1v25a_ 149 -GYLAY-EEA------LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVP 220 (534)
T ss_dssp -TCEEH-HHH------CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSC
T ss_pred -ccccc-ccc------ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccc
Confidence 00000 000 1122234456678999999999999999999999999987654443 3356688999999999
Q ss_pred cchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCH
Q 004825 406 LGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV 485 (728)
Q Consensus 406 ~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~ 485 (728)
+.|..+....+.++..|+++++.....++..+..++.++++|++.++|+++..++........++++||.+++||+++++
T Consensus 221 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~ 300 (534)
T d1v25a_ 221 MFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPR 300 (534)
T ss_dssp TTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCH
T ss_pred hhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCH
Confidence 99999998888899999999998877888899999999999999999999999987655556778999999999999999
Q ss_pred HHHHHHHhccCCCCeEecccccccccccccCCccc----------ccccccccCCCCCceEEEEcCCCCccCCCCCceeE
Q 004825 486 DEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQ----------AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 555 (728)
Q Consensus 486 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGE 555 (728)
...+++.+. +.++++.||+||++..++...... ....+++|+|++|++++|+|++|++++.+..++||
T Consensus 301 ~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Ge 378 (534)
T d1v25a_ 301 SLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGE 378 (534)
T ss_dssp HHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEE
T ss_pred HHHHHHHHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCeeEE
Confidence 999888754 478999999999998765443221 12346899999999999999999999886444699
Q ss_pred EEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCC
Q 004825 556 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 635 (728)
Q Consensus 556 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~ 635 (728)
|+|.+..+..+ |+++++.+...|..++ ||+|||+|++++||.++++||+||+||++|+||+|.|||++|. +|
T Consensus 379 l~v~g~~v~~g-Y~~~~~~t~~~~~~dg------~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~ 450 (534)
T d1v25a_ 379 VQLKGPWITGG-YYGNEEATRSALTPDG------FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GH 450 (534)
T ss_dssp EEEESTTSBSS-CBTCHHHHHTTBCTTS------CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----
T ss_pred EEEcCCcccce-ecCChhhhhhhcccCC------CCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHH-hC
Confidence 99977655432 4667777877776443 9999999999999999999999999999999999999999995 99
Q ss_pred CCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHH
Q 004825 636 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 715 (728)
Q Consensus 636 p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L 715 (728)
|+|.||+|++++++..+ +.++|+|++++ +. ...+++.+ ..+++.||+|++|..|+++++||+|+||||||++|
T Consensus 451 ~~V~~a~v~~~~~~~~~-~~l~a~vv~~~-~~--~~~~~~~~---~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~l 523 (534)
T d1v25a_ 451 PKVKEAAVVAIPHPKWQ-ERPLAVVVPRG-EK--PTPEELNE---HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRAL 523 (534)
T ss_dssp ------CEEEEECSSSS-EEEEECC-------------------------CCCTTTSCSBC--------------CCTTH
T ss_pred CCcceEEEEEEECCCCC-eEEEEEEEeCC-CC--CCHHHHHH---HHHHhcCCcCCCccEEEEECCCCCCCCccccHHHH
Confidence 99999999999998888 89999999876 33 23333333 24678899999999999999999999999999999
Q ss_pred HHHHHhh
Q 004825 716 RKQLAQL 722 (728)
Q Consensus 716 ~~~~~~~ 722 (728)
+++++++
T Consensus 524 r~~~~~~ 530 (534)
T d1v25a_ 524 REQYKNY 530 (534)
T ss_dssp HHHSTTS
T ss_pred HHHHHhh
Confidence 9998764
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=4.8e-71 Score=624.28 Aligned_cols=509 Identities=17% Similarity=0.160 Sum_probs=392.9
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
..++.+++++ ..|+++|+++.+.+ +++||+||+++++++|++|+++||++||+|+|+++|++++++++|||++
T Consensus 22 ~l~~~~~~~~-~~P~~~a~~d~~~~------~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~ 94 (541)
T d1lcia_ 22 QLHKAMKRYA-LVPGTIAFTDAHIE------VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 94 (541)
T ss_dssp HHHHHHHHHH-TSTTCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCCeEEEEeCCCC------eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 3444444444 35999999875442 3899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCCc-EEEEcCCCCCcccccCCCCcCHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAPL-AIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+|++++|+++.++.+++.++|++++++++|+++... ... ++....+.. .+++...... ......+.+
T Consensus 95 ~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 163 (541)
T d1lcia_ 95 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD-----YQGFQSMYT 163 (541)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC-----BTTBEEHHH
T ss_pred hCeEEEecCCCCCHHHHHHHHHhccceEEeeecccc------ccchhccccccccceeeeecCCcc-----ccccchhhh
Confidence 999999999999999999999999999999988543 212 333333332 2222211111 112233333
Q ss_pred HHHhhhcc---ccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh---cCCCCCCEEEecCCcchh
Q 004825 336 FLERVRKL---KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTNLGWM 409 (728)
Q Consensus 336 ~~~~~~~~---~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~ 409 (728)
........ .....+.....++++|||+|||||||.||||+++|++++....+.... ..+.+++++++..|++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 243 (541)
T d1lcia_ 164 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 243 (541)
T ss_dssp HHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSH
T ss_pred hhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccc
Confidence 33332211 111122334456889999999999999999999999998877666543 357789999999999999
Q ss_pred hhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHH
Q 004825 410 MGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYL 489 (728)
Q Consensus 410 ~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~ 489 (728)
.+....+..+..|+.++.... .+......++..+++|.+.++|+++..+++.......+++++|.+++||+++++...+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~ 322 (541)
T d1lcia_ 244 FGMFTTLGYLICGFRVVLMYR-FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGE 322 (541)
T ss_dssp HHHHHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHH
T ss_pred ccccccccccccccccccccc-cccchhHHHHhhhhccccccCccccccccccccccccccccceEEEeccccccccccc
Confidence 999888888888888876543 4567788999999999999999999999988777777889999999999999999999
Q ss_pred HHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEeccccCCCcc
Q 004825 490 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASST 568 (728)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~~~ 568 (728)
++.+.++...+++.||+||++..++.... .....+++|+|++|++++|+|+ +|++++.|+. |||+|.+..+..+ |
T Consensus 323 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~--Gel~v~g~~~~~g-Y 398 (541)
T d1lcia_ 323 AVAKRFHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSG-Y 398 (541)
T ss_dssp HHHHHTTCSCCBCEECCGGGSSCSEECCC-C---CCCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSE-E
T ss_pred ccccccCCceeeecCCccccCceEEecCc-ccCCCCccccccCCCEEEEEECCCCcCCCCCCe--EEEEEccCccCCe-e
Confidence 99988876789999999999987665443 3456779999999999999996 5999999987 9999977655432 3
Q ss_pred ccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecC
Q 004825 569 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPP 648 (728)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~ 648 (728)
+++++.+...|.. .+||+|||+|++++||.++++||.||+||++|++|+|.|||++|. +||+|.+|+|+++++
T Consensus 399 ~~~~~~~~~~~~~------~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~ 471 (541)
T d1lcia_ 399 VNNPEATNALIDK------DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPD 471 (541)
T ss_dssp TTBHHHHHHHBCT------TSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEE
T ss_pred CCChhhhhhcccC------CccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEEC
Confidence 4455555555543 349999999999999999999999999999999999999999995 999999999999988
Q ss_pred CCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCC-cccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 649 PDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPL-FKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~-~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
+..| +.++|+|++++ +. ..+.+++++ +++++|+++ ++|..++++++||+|++|||||++|++++.+..
T Consensus 472 ~~~g-~~~~a~v~~~~-~~-~~~~~~l~~----~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~ 540 (541)
T d1lcia_ 472 DDAG-ELPAAVVVLEH-GK-TMTEKEIVD----YVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 540 (541)
T ss_dssp TTTE-EEEEEEEEECT-TC-CCCHHHHHH----HHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHHT
T ss_pred CCCC-EEEEEEEEECC-CC-CCCHHHHHH----HHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHhC
Confidence 8777 89999999987 55 466666655 577778766 579999999999999999999999999987643
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=2.1e-70 Score=615.12 Aligned_cols=482 Identities=19% Similarity=0.203 Sum_probs=403.0
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
.+..++|+++|+++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 23 ~tl~~l~~~~a~~~Pd~~Al~~~~~--------~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~ 94 (514)
T d1amua_ 23 KTIHQLFEEQVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVL 94 (514)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHH
Confidence 3566889999999999999999887 99999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC-CcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA-PLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
++|++++|++|.++.+++.+++++++++++|++.... ..+.... .............
T Consensus 95 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~~~~~~------------- 152 (514)
T d1amua_ 95 KAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV---------HLIHNIQFNGQVEIFEEDTIK------------- 152 (514)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHTTSCCCSEEEECCCSTTT-------------
T ss_pred HhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhh---------hhhhhhccccccccccccccc-------------
Confidence 9999999999999999999999999999999987542 1111111 1111111110000
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 415 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 415 (728)
. ........+..++++|+|+|||||||.||+|+++|+++..........+.+..+|++++..|++|..+++.+
T Consensus 153 ----~---~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 225 (514)
T d1amua_ 153 ----I---REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 225 (514)
T ss_dssp ----T---SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ----c---cccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccc
Confidence 0 111122344567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 416 YASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
+.++..|+++++.... .+....++.+..+.++.+..+|...... ...++++++.+++||+++++++..++.+
T Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~G~~~~~~~~~~~~~ 299 (514)
T d1amua_ 226 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGSATSPSLVNKWKE 299 (514)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEEEEESSCCCHHHHHHHTT
T ss_pred cccccccccccccccccccchhhhhhhhhhhhcccccceeeecccc------cccccccccEEEEecccCCHHHhhhhcc
Confidence 9999999999987532 2445678899999999999999875532 3456889999999999999999887765
Q ss_pred ccCCCCeEecccccccccccccCCc--ccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccC
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSL--LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLN 571 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~ 571 (728)
+..+++.||+||++.+++.... .......+.|.+.++..+.+.|+++++++.|+. |||+|.++.+.. .|+++
T Consensus 300 ---~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~--GEl~v~~~~~~~-gY~~~ 373 (514)
T d1amua_ 300 ---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLAR-GYWKR 373 (514)
T ss_dssp ---TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCC-EETTC
T ss_pred ---ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCe--eEEEEccCcccc-ccccc
Confidence 4689999999999986554333 223345678899999999999999999999986 999996665443 34667
Q ss_pred ccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004825 572 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651 (728)
Q Consensus 572 ~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~ 651 (728)
++.+.+.|..+++.++++||+|||+|++|+||+|+++||+||+||++|++|+|.+||++|. +||+|.+|+|++.+++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~-~~~~V~~~~V~~~~~~~~ 452 (514)
T d1amua_ 374 PELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQE 452 (514)
T ss_dssp HHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTS
T ss_pred ccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCC
Confidence 7788889999988889999999999999999999999999999999999999999999995 999999999999998888
Q ss_pred CceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 652 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
| +.++|++++++ + .+.+++++ +++++|++|++|..|+++++||+|++|||+|++|++
T Consensus 453 g-~~~~a~v~~~~-~---~~~~~l~~----~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 453 Q-PYLCAYFVSEK-H---IPLEQLRQ----FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp C-EEEEEEEEESS-C---CCHHHHHH----HHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred C-EEEEEEEEcCC-C---CCHHHHHH----HHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 8 89999999877 3 45555554 678889999999999999999999999999999886
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.8e-69 Score=608.94 Aligned_cols=500 Identities=18% Similarity=0.171 Sum_probs=404.7
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
+..++|.++|+++||++|+++.++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 26 tl~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~ 97 (536)
T d1mdba_ 26 TFGDLLRDRAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (536)
T ss_dssp CHHHHHHHHHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCeEEEECCE--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 467889999999999999999877 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+|+++||++|.++.+++.++|++++++++++++.................... ..+...... ....+.+
T Consensus 98 ~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 168 (536)
T d1mdba_ 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE---------EFLPLED 168 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT---------TSEEGGG
T ss_pred hCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc---------cccchhh
Confidence 99999999999999999999999999999998754321111111111111111 111111110 0111111
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH-H
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-L 414 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~ 414 (728)
+ ...........++++++|+|||||||.||||++||+++...+.+....++++++|++++..++.|.+++. .
T Consensus 169 ~-------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~ 241 (536)
T d1mdba_ 169 L-------HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSP 241 (536)
T ss_dssp C-------CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSS
T ss_pred c-------ccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeec
Confidence 0 1122233456789999999999999999999999999999999999999999999999999999999874 3
Q ss_pred HHHHhhh-CcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 415 VYASLLN-GASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 415 ~~~~L~~-G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
++..++. |.+++. ...+++..++..+++++++.+..+|..+..+..........+++++.+++||+++++....++.+
T Consensus 242 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~ 320 (536)
T d1mdba_ 242 GVLGVLYAGGRVVL-SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKA 320 (536)
T ss_dssp HHHHHHHTTCEEEE-CSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHH
T ss_pred cccccccccccccc-cCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhh
Confidence 3344444 555554 44567888999999999999999999999987776556667899999999999999999998888
Q ss_pred ccCCCCeEecccccccccccccCCcccccccccccCCCC-CceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAM-GCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~-~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
.++ ......||.+|.+..+...........+++|+|++ +..+.|.+++|++++.|+. |||++.+..+..+ |++++
T Consensus 321 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~--Gel~v~g~~~~~g-Y~~~~ 396 (536)
T d1mdba_ 321 VFG-CTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRG-YYKAE 396 (536)
T ss_dssp HTC-SEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSS-CTTCH
T ss_pred ccC-ceeeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCeeccccc--ceeecCCCccccc-ccccc
Confidence 775 67788888888776665555545556678999975 6777788888999999987 9999977665443 34455
Q ss_pred cccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 573 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
+.+...+..+ +||+|||++++++||+|+++||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..|
T Consensus 397 ~~~~~~~~~~------~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~-~~p~V~~a~vvg~~~~~~g 469 (536)
T d1mdba_ 397 EHNAASFTED------GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG 469 (536)
T ss_dssp HHHHHHBCTT------SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE
T ss_pred cccccccccc------CccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEEcCCCC
Confidence 5555555533 39999999999999999999999999999999999999999995 9999999999999888777
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+.++|||++++ +. .+.+++++. +++ .||+|++|..|+++++||+|+||||||++|++++++
T Consensus 470 -~~~~a~v~~~~-~~--~~~~~l~~~----l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (536)
T d1mdba_ 470 -ERSCVFIIPRD-EA--PKAAELKAF----LRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (536)
T ss_dssp -EEEEEEEEESS-SC--CCHHHHHHH----HHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred -eEEEEEEEECC-CC--CCHHHHHHH----HHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHH
Confidence 88999999876 43 566666664 555 499999999999999999999999999999999864
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.5e-65 Score=572.61 Aligned_cols=493 Identities=20% Similarity=0.169 Sum_probs=394.8
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
++++++|.++|+++||++|+++.+.+ +++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 75 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALH 75 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCC------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 45678899999999999999997653 489999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC-CcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA-PLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
++|++++|++|.++++++++++++++++++|++.... .. ....+... ..++.+ .+
T Consensus 76 ~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~-----~~-~~~~~~~~~~~~i~~------------------~~ 131 (503)
T d3cw9a1 76 RLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ-----VA-DAIFQSGSGARIIFL------------------GD 131 (503)
T ss_dssp HHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHH-----HH-HHHHHTTCCCEEEEH------------------HH
T ss_pred HhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchH-----HH-HHHhhhccccccccc------------------hh
Confidence 9999999999999999999999999999999886421 00 01122221 122221 11
Q ss_pred HHHhhhc-cccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcC--CCCCCEEEecCCcchhhhH
Q 004825 336 FLERVRK-LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMD--IRKADIVAWPTNLGWMMGP 412 (728)
Q Consensus 336 ~~~~~~~-~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~ 412 (728)
+...... ............++++++++|||||||.||+|+++|+++...+......+. ....++++..+|+.+..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 211 (503)
T d3cw9a1 132 LVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211 (503)
T ss_dssp HEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHH
T ss_pred hhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccc
Confidence 1111100 011223334567899999999999999999999999999988887776654 4556899999999888877
Q ss_pred H-HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCC--CCCCCCCcCeeEEEeecCCCCHHHHH
Q 004825 413 W-LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN--CIDGYDWSSIRCFGSTGEASNVDEYL 489 (728)
Q Consensus 413 ~-~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~--~~~~~~l~~lr~i~~gGe~l~~~~~~ 489 (728)
. ..+.+...++++++.+ ..++..+...+..++++.+..+|+.+..+.... ......+++||.+++||++++++...
T Consensus 212 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~ 290 (503)
T d3cw9a1 212 FAVLVAALALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLE 290 (503)
T ss_dssp HTTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHH
T ss_pred cccccccccccccccccc-ccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccc
Confidence 4 4556666777766654 357788999999999999999999988875532 23345578999999999999999988
Q ss_pred HHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccc
Q 004825 490 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 569 (728)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~ 569 (728)
++...++ ..+.+.||.||++..+....... ....+.+.+.+.....+.+..++.++.|+. |++.+........+++
T Consensus 291 ~~~~~~~-~~~~~~yg~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--g~~~~~~~~~~~~~~~ 366 (503)
T d3cw9a1 291 TVHQHLP-GEKVNIYGTTEAMNSLYMRQPKT-GTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYL 366 (503)
T ss_dssp HHHHHCC-SEEEEEEEETTTEEEEEEESCSS-SSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBT
T ss_pred ccccccc-ccccccccccccceeeeeccccc-cccccccccccceeeeeecccCcccCCCcc--cccccccccccccccc
Confidence 8887764 67999999999987655444322 233445566666777777888999999997 8877744444444556
Q ss_pred cCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCC
Q 004825 570 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 649 (728)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~ 649 (728)
.+++.+++.|.+ | ||+|||+|++++||.|+++||+||+||++|++|+|.|||++|. .||+|.+|+|++.+++
T Consensus 367 ~~~~~t~~~~~~-----g--~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~ 438 (503)
T d3cw9a1 367 NQPQATAEKLQD-----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLADQ 438 (503)
T ss_dssp TCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEET
T ss_pred CChhhhHHHhcC-----C--ceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECC
Confidence 677777777742 3 9999999999999999999999999999999999999999995 8999999999999988
Q ss_pred CCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHH-HhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHH
Q 004825 650 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAV-QKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 719 (728)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l-~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 719 (728)
..| +.++|||+++. +. ..+.+++++ ++ .++||.|++|+.|+++++||+|+||||+|++|++++
T Consensus 439 ~~g-~~~~a~v~~~~-~~-~~~~~~l~~----~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 439 RWG-QSVTACVVPRL-GE-TLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp TTE-EEEEEEEEECT-TC-CCCHHHHHH----HHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred CCC-eEEEEEEEeCC-CC-CCCHHHHHH----HHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 877 89999999987 55 566666665 45 367999999999999999999999999999999986
|
| >d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=97.28 E-value=1.3e-06 Score=84.65 Aligned_cols=125 Identities=6% Similarity=-0.094 Sum_probs=83.3
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCC-CccchhheeeecccCCCC----CCCccCChh
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLP-FSFHQLLYYGCYKDFGPD----PPAWIPDPE 89 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~-~~~~~~~f~~~~~~~~~~----~~~~~~~~~ 89 (728)
.+++++..+++.+|.++++++.+...+ .||++||+.|++.+...+. ...++++|....+.. .. ...+.+ ..
T Consensus 104 ~lP~r~~~~~~~t~~~ll~~v~~~~~~~~~h~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~ 181 (250)
T d1l5aa2 104 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFES-PHFADCQTELKV-LA 181 (250)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCTTCCBCCCSEEEEECCCC-CCCTTCEEEEEE-EE
T ss_pred eeeEEEEeCCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhcCCCCCCCccceEEEeeccCc-cCCCCCceEEEe-ee
Confidence 467888888889999999999998766 9999999999999975543 333444333222221 10 000100 01
Q ss_pred hhhhccHHHHHHHh-ccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecC
Q 004825 90 AAKVTNVGKLLQTR-GEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVP 148 (728)
Q Consensus 90 ~~~~~~l~~~~~~~-~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~ 148 (728)
.....|+.+.+... ++++...+ |+. ++|.+++|+.+..+|..+|+++...+..+
T Consensus 182 ~~~~~dl~l~v~~~~~~~l~l~~~y~~-----~~~~~~~i~~l~~~~~~ll~~l~~~p~~~ 237 (250)
T d1l5aa2 182 SGSAEGINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQV 237 (250)
T ss_dssp ECCCCSEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceeeEEEEEEEcCCceEEEEEEEeh-----hhCCHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 11234555554433 44567778 999 99999999999999999999985433333
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=83.78 E-value=5.3 Score=40.77 Aligned_cols=117 Identities=16% Similarity=0.055 Sum_probs=82.9
Q ss_pred CCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHH---HHHHHHHhcCCCCCCEEEecCC
Q 004825 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK---AAADAWCHMDIRKADIVAWPTN 405 (728)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~---~~~~~~~~~~~~~~d~~l~~~~ 405 (728)
...++.+++.... ...|+.+|++...+|. .-.+|.+.+.. .+.......+++++|++....+
T Consensus 9 ~~~~l~~~l~~~a----------~~~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~ 73 (534)
T d1v25a_ 9 EELNLWDFLERAA----------ALFGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGF 73 (534)
T ss_dssp CCCCTHHHHHHHH----------HHSTTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred CCCCHHHHHHHHH----------HHcCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeC
Confidence 3445556655432 2356778866555542 22467665544 3444445679999999988888
Q ss_pred cchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHc
Q 004825 406 LGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKS 461 (728)
Q Consensus 406 ~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~ 461 (728)
-+... +..+++.+..|+..+..+......++...|+..++..+.........+..
T Consensus 74 n~~e~-~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (534)
T d1v25a_ 74 NHFRH-LEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128 (534)
T ss_dssp SSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred CCHHH-HHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence 76664 45677999999999998877777889999999999999988887776644
|